RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4492
         (96 letters)



>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial;
           mitochondrial ribosome, large ribosomal subunit,
           ribosomal R ribosome; 12.10A {Bos taurus}
          Length = 137

 Score = 69.5 bits (170), Expect = 5e-17
 Identities = 40/90 (44%), Positives = 56/90 (62%)

Query: 7   AQAPVAAAPVEEEEEKIVQSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESI 66
                  A  E+  ++  ++ FTV+L +     KV LIKEIK  ++G+NLVQAKK VES+
Sbjct: 48  PAPTAPEAAEEDVPKQKERTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESL 107

Query: 67  PAVVKTDVTKEEAEALKASLAKVGGEVSVE 96
           P  +K +V K EAE +KA+L  VGG V +E
Sbjct: 108 PQEIKANVAKAEAEKIKAALEAVGGTVVLE 137


>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with
           ribosome, ribosome-antibi complex; 3.20A {Escherichia
           coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3
           2gyc_3 1rqt_A
          Length = 121

 Score = 50.5 bits (121), Expect = 9e-10
 Identities = 41/93 (44%), Positives = 54/93 (58%), Gaps = 5/93 (5%)

Query: 3   ISIFAQAPVAAAPVEEEEEKIVQSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKF 62
           +S  A   VAA PVE  EEK   + F V L       KV +IK ++G   G+ L +AK  
Sbjct: 33  VSAAAAVAVAAGPVEAAEEK---TEFDVILKAAGAN-KVAVIKAVRGAT-GLGLKEAKDL 87

Query: 63  VESIPAVVKTDVTKEEAEALKASLAKVGGEVSV 95
           VES PA +K  V+K++AEALK +L + G EV V
Sbjct: 88  VESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120


>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1
          PDB: 1rqs_A 2bcw_B
          Length = 74

 Score = 43.1 bits (102), Expect = 2e-07
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 25 QSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKA 84
          ++ F V L       KV +IK ++G   G+ L +AK  VES PA +K  V+K++AEALK 
Sbjct: 5  KTEFDVILKAAGAN-KVAVIKAVRGAT-GLGLKEAKDLVESAPAALKEGVSKDDAEALKK 62

Query: 85 SLAKVGGEVSVE 96
          +L + G EV V+
Sbjct: 63 ALEEAGAEVEVK 74


>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit,
           thiopeptide antibiotics, complex, translational
           regulation, molecular switch; 3.30A {Deinococcus
           radiodurans} SCOP: d.45.1.1
          Length = 122

 Score = 42.8 bits (101), Expect = 7e-07
 Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 7   AQAPVAAAPVEEEEEKIVQSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESI 66
                A A     EEK   + F V L+      K+ +IKEI+G+  G+ L +AK   E  
Sbjct: 39  VSGGGAGAASPAAEEK---TEFDVVLIDAGAS-KINVIKEIRGIT-GLGLKEAKDMSEK- 92

Query: 67  PAVVKTDVTKEEAEALKASLAKVGGEVSVE 96
             V+K  V K+EAE +KA L   G  V ++
Sbjct: 93  GGVLKEGVAKDEAEKMKAQLEAAGARVELK 122


>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA,
           translation; 2.8A {Thermus thermophilus} PDB: 2j03_L
           3i8i_I
          Length = 125

 Score = 42.8 bits (101), Expect = 1e-06
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 6/89 (6%)

Query: 7   AQAPVAAAPVEEEEEKIVQSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESI 66
           A AP A A     EEK   + F V L +   K K+ +IKE++ +  G+ L +AK   E  
Sbjct: 42  AAAPAAGAAAAPAEEK---TEFDVILKEAGAK-KLEVIKELRAIT-GLGLKEAKDLAEKG 96

Query: 67  PAVVKTDVTKEEAEALKASLAKVGGEVSV 95
             V K  V+K+EAE +K  L  VG  V +
Sbjct: 97  GPV-KEGVSKQEAEEIKKKLEAVGAVVEL 124


>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge
           region, four-helix-bundl helix- bundle, alpha-beta
           structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1
           d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I
          Length = 128

 Score = 41.3 bits (97), Expect = 4e-06
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 8/92 (8%)

Query: 7   AQAPVAAAPVEEEEEKIVQSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESI 66
           A     AA    +EEK   + F V L  +    K+ +IK ++ +  G+ L +AK  VE  
Sbjct: 41  AAPVAGAAAGAAQEEK---TEFDVVLKSFGQN-KIQVIKVVREIT-GLGLKEAKDLVEKA 95

Query: 67  P---AVVKTDVTKEEAEALKASLAKVGGEVSV 95
               AV+K+ V+KEEAE +K  L + G EV +
Sbjct: 96  GSPDAVIKSGVSKEEAEEIKKKLEEAGAEVEL 127


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 32.5 bits (73), Expect = 0.014
 Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 18/78 (23%)

Query: 3   ISIF---AQAPVA------AAPVEEEEEKIVQSLFTVKLVKYDDKQKVPLIKEIKGL--- 50
           +S+F   A  P           ++ +   +V  L    LV   +KQ       I  +   
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV---EKQPKESTISIPSIYLE 434

Query: 51  --LEGMNLVQA-KKFVES 65
             ++  N     +  V+ 
Sbjct: 435 LKVKLENEYALHRSIVDH 452


>2wol_A ORF15, clavulanic acid biosynthesis oligopeptide binding protein 2;
           solute-binding protein; 1.45A {Streptomyces
           clavuligerus} PDB: 2wok_A 2wop_A*
          Length = 562

 Score = 28.2 bits (63), Expect = 0.39
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 13/70 (18%)

Query: 35  YDDKQKVPLIKEIKGLLEGMNLVQAKKFVE--------SIPAVVKTDVTKEEAEALKASL 86
           + D    P   +++G     +L  A+  +               +    +  A+A+  SL
Sbjct: 359 HQDLDLYPTGPDLRG-----DLDAARAELAAAGLPDGFRAVIGTQRGKFRLVADAVVESL 413

Query: 87  AKVGGEVSVE 96
           A+VG E++V+
Sbjct: 414 ARVGIELTVK 423


>2noo_A NIKA, nickel-binding periplasmic protein; nickel-bound, transport,
           iodine, hydrolase; HET: TYI; 1.65A {Escherichia coli
           K12} PDB: 3mvx_A* 3dp8_A* 3e3k_A* 1zlq_A* 3mvw_A*
           3mvy_A* 3mvz_A* 3mw0_A* 3mz9_A* 1uiu_A 1uiv_A 3mzb_A*
           3qim_A
          Length = 502

 Score = 27.0 bits (60), Expect = 0.91
 Identities = 11/71 (15%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 29  TVKLVKYDDKQKVPLIKE---IKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKAS 85
            +K  +YD ++   L+++        + +     +     +  +    ++K  AE ++A 
Sbjct: 304 GLKPSQYDPQKAKALLEKAGWTLPAGKDIREKNGQPLRIELSFIGTDALSKSMAEIIQAD 363

Query: 86  LAKVGGEVSVE 96
           + ++G +VS+ 
Sbjct: 364 MRQIGADVSLI 374


>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
          center for infectious disease, ssgcid, oxidoreductase,
          structural genomics; 2.20A {Brucella melitensis}
          Length = 256

 Score = 25.6 bits (57), Expect = 2.7
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 59 AKKFVESIPAVVKTDVTKEEAEALKASLAKVGGEV 93
          A  F ++  +VV TD+  E AEA+ A++ + GG+ 
Sbjct: 29 AGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKA 63


>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
          oxidoreductase; HET: NAD; 1.75A {Sulfolobus
          acidocaldarius}
          Length = 254

 Score = 25.5 bits (57), Expect = 2.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 59 AKKFVESIPAVVKTDVTKEEAEALKASLAKVGGEV 93
          AKKF  +   VV  ++ ++    +   L  +G EV
Sbjct: 24 AKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEV 58


>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG;
          DAH7P synthase, shikimate pathway, aromatic
          biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium
          tuberculosis} PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A*
          3nv8_A* 3pfp_A* 2w19_A 2w1a_A*
          Length = 462

 Score = 25.9 bits (56), Expect = 2.9
 Identities = 5/16 (31%), Positives = 7/16 (43%)

Query: 74 VTKEEAEALKASLAKV 89
              E   L+  LA+V
Sbjct: 59 TVPSEIVRLQEQLAQV 74


>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
          YORK structural genomi research consortium, nysgrc,
          oxidoreductase; HET: NAP; 1.93A {Sinorhizobium
          meliloti}
          Length = 280

 Score = 25.2 bits (56), Expect = 3.5
 Identities = 10/35 (28%), Positives = 11/35 (31%)

Query: 59 AKKFVESIPAVVKTDVTKEEAEALKASLAKVGGEV 93
          A  F      VV T         L   +A  GGE 
Sbjct: 25 ALLFAREGAKVVVTARNGNALAELTDEIAGGGGEA 59


>2d5w_A Peptide ABC transporter, peptide-binding protein; protein-peptide
           complex, peptide binding protein; 1.30A {Thermus
           thermophilus}
          Length = 603

 Score = 25.2 bits (55), Expect = 3.7
 Identities = 8/49 (16%), Positives = 16/49 (32%)

Query: 48  KGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGGEVSVE 96
            G+L+     +  +F           V +   +     L K+G  V + 
Sbjct: 391 DGILQRTVNGRTVRFEIEYVTTAGNVVRERTQQFFAEDLKKIGIAVKIN 439


>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
          reductase; structural genomics; 2.25A {Mycobacterium
          avium subsp}
          Length = 253

 Score = 25.2 bits (56), Expect = 4.2
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 59 AKKFVESIPAVVKTDVTKEEAEALKASLAKVGGEV 93
          A+       AVV  D+  E AEA+   +   GG  
Sbjct: 26 AEALAREGAAVVVADINAEAAEAVAKQIVADGGTA 60


>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
           ribosomal; 10.80A {Bos taurus}
          Length = 537

 Score = 25.2 bits (56), Expect = 4.2
 Identities = 10/92 (10%), Positives = 29/92 (31%), Gaps = 3/92 (3%)

Query: 7   AQAPVAAAPVEEEEEKIVQSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESI 66
            +         +E ++  +         +  ++     +E +         + ++    +
Sbjct: 281 KEDLKLIEEKRKEHQEAHRKDREKYGTVHWKERSYIKYREKRQQQPLKPKEKLERDSNVL 340

Query: 67  PAVVKTDVTKEEAEALKASLAKVGG--EVSVE 96
           P +VK DV     EA+   +       E  ++
Sbjct: 341 PVIVKGDVDG-SVEAILNVMDTYDASHECELD 371


>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta
          protein, NAD(P)-binding rossmann fold, csgid,
          oxidoreductase; 1.95A {Francisella tularensis subsp}
          Length = 247

 Score = 25.1 bits (56), Expect = 4.2
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 59 AKKFVESIPAVVKTDVTKEEAEALKASLAKVGGEVSV 95
          A         VV T  ++  AE  + S+ + G +   
Sbjct: 22 AHALASKGATVVGTATSQASAEKFENSMKEKGFKARG 58


>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
          short-chain alcohol reductase, fatty acid biosynthesis,
          apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
          Length = 285

 Score = 25.2 bits (56), Expect = 4.3
 Identities = 8/37 (21%), Positives = 17/37 (45%)

Query: 59 AKKFVESIPAVVKTDVTKEEAEALKASLAKVGGEVSV 95
          AK   +S+  V+    T++  +++   +   G E S 
Sbjct: 61 AKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSG 97


>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase,
           transferase; HET: U2F; 2.0A {Escherichia coli} SCOP:
           c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
          Length = 482

 Score = 25.3 bits (56), Expect = 4.3
 Identities = 8/12 (66%), Positives = 11/12 (91%), Gaps = 1/12 (8%)

Query: 52  EGMNLVQAKKFV 63
           +GMNLV AK++V
Sbjct: 362 DGMNLV-AKEYV 372


>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding
          domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter
          oxydans} SCOP: c.2.1.2
          Length = 262

 Score = 24.8 bits (55), Expect = 4.4
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 59 AKKFVESIPAVVKTDVTKEEAEALKASLAKVGGEV 93
          A +  E   A+   D+ +E  E  +AS+ + G E 
Sbjct: 24 ALRLAEEGTAIALLDMNREALEKAEASVREKGVEA 58


>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase;
           1.70A {Streptomyces hygroscopicus} PDB: 3t7d_A*
          Length = 496

 Score = 25.0 bits (55), Expect = 5.0
 Identities = 3/12 (25%), Positives = 5/12 (41%), Gaps = 1/12 (8%)

Query: 52  EGMNLVQAKKFV 63
           +G NL    +  
Sbjct: 382 DGQNLS-TFEAP 392


>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
          {Gluconobacter oxydans}
          Length = 260

 Score = 24.8 bits (55), Expect = 5.1
 Identities = 7/35 (20%), Positives = 12/35 (34%)

Query: 59 AKKFVESIPAVVKTDVTKEEAEALKASLAKVGGEV 93
               E+   V+  D+ +  A      L   G +V
Sbjct: 30 VTALAEAGARVIIADLDEAMATKAVEDLRMEGHDV 64


>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
          {Uncultured bacterium BIO5}
          Length = 262

 Score = 24.8 bits (55), Expect = 5.2
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 59 AKKFVESIPAVVKTDVTKEEAEALKASLAKVGGEVSV 95
          A+K       VV T    E+  A++  +   GGE   
Sbjct: 46 ARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAES 82


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.0 bits (54), Expect = 5.6
 Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 15/49 (30%)

Query: 11   VAAAPVEEEEEKIVQSLFTVKLVKYDDKQKVPLIK--------EIKGLL 51
            VAA      + + + ++    ++ +   QK+ +I+        E++G L
Sbjct: 1854 VAAG-----DLRALDTV--TNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895


>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
          reductase; PSI-biology, structural genomics, protein
          structure initiati nysgrc; 2.70A {Sinorhizobium
          meliloti}
          Length = 283

 Score = 24.5 bits (54), Expect = 6.0
 Identities = 6/26 (23%), Positives = 10/26 (38%)

Query: 68 AVVKTDVTKEEAEALKASLAKVGGEV 93
           V     T+ E E +   +   GG+ 
Sbjct: 54 TVGALGRTRTEVEEVADEIVGAGGQA 79


>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
          3-ketoacyl-(acyl-carrier- protein) reductase,
          oxidoreductase, structural genomics; 2.05A
          {Burkholderia pseudomallei}
          Length = 270

 Score = 24.4 bits (54), Expect = 6.1
 Identities = 9/37 (24%), Positives = 15/37 (40%)

Query: 59 AKKFVESIPAVVKTDVTKEEAEALKASLAKVGGEVSV 95
          A +       V+ T  T+  AE + A+  + G E   
Sbjct: 45 ALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRG 81


>3tpa_A Heme-binding protein A; glutathione binding protein, SBP; 2.00A
           {Haemophilus parasuis 29755}
          Length = 521

 Score = 24.6 bits (54), Expect = 6.6
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 79  AEALKASLAKVGGEVSVE 96
           AE ++A  AK+G +  + 
Sbjct: 372 AEIIQADWAKIGVKAKLV 389


>1dpe_A Dipeptide-binding protein; peptide transport, periplasmic,
           chemotaxis binding proteins for active transport; 2.00A
           {Escherichia coli K12} SCOP: c.94.1.1 PDB: 1dpp_A
          Length = 507

 Score = 24.6 bits (54), Expect = 7.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 79  AEALKASLAKVGGEVSVE 96
           AE ++A  AKVG +  + 
Sbjct: 365 AEMIQADWAKVGVQAKIV 382


>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
          NDP; 2.40A {Streptomyces griseoruber}
          Length = 279

 Score = 24.1 bits (53), Expect = 7.8
 Identities = 6/26 (23%), Positives = 8/26 (30%)

Query: 68 AVVKTDVTKEEAEALKASLAKVGGEV 93
          AV       +   A    L   G +V
Sbjct: 50 AVYGCARDAKNVSAAVDGLRAAGHDV 75


>3m8u_A Heme-binding protein A; glutathione binding protein, ABC-type
           transport system, PERI component, transport protein;
           HET: GDS; 1.85A {Haemophilus parasuis}
          Length = 522

 Score = 24.2 bits (53), Expect = 7.9
 Identities = 5/18 (27%), Positives = 10/18 (55%)

Query: 79  AEALKASLAKVGGEVSVE 96
           AE +++   KVG +  + 
Sbjct: 367 AELVQSDWEKVGVKSKLV 384


>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
           of protein synthesis, cryo-eletron microscopy,
           translation/RNA complex; 13.80A {Escherichia coli}
          Length = 501

 Score = 24.0 bits (53), Expect = 9.1
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 63  VESIPAVVKTDVTKEEAEALKASLAKVG-GEVSV 95
           V  +  V+K DV +   EA+  SL K+   EV V
Sbjct: 299 VHEVNIVLKADV-QGSVEAISDSLLKLSTDEVKV 331


>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
          structural genomics, protein structure initiative;
          1.87A {Rhodopseudomonas palustris}
          Length = 252

 Score = 24.2 bits (53), Expect = 9.9
 Identities = 10/35 (28%), Positives = 13/35 (37%)

Query: 59 AKKFVESIPAVVKTDVTKEEAEALKASLAKVGGEV 93
          AKKF      V       E+   L A +   GG +
Sbjct: 24 AKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRI 58


>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
          combinatorial biosynthesis, short chain
          dehydrogenase/reductase; HET: NAP EMO; 2.10A
          {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
          1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
          1xr3_A*
          Length = 277

 Score = 24.1 bits (53), Expect = 9.9
 Identities = 6/37 (16%), Positives = 11/37 (29%)

Query: 59 AKKFVESIPAVVKTDVTKEEAEALKASLAKVGGEVSV 95
          A++  +    V      +E        L + G E   
Sbjct: 39 ARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADG 75


>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division
          protein, RNP domain, transmembrane, inner membrane,
          repeat; NMR {Escherichia coli} SCOP: d.58.52.1
          Length = 81

 Score = 23.2 bits (50), Expect = 10.0
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 75 TKEEAEALKASLAKVGGEVSVE 96
            E+AE ++A LA  G +  + 
Sbjct: 19 GAEQAETVRAQLAFEGFDSKIT 40


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.310    0.128    0.321 

Gapped
Lambda     K      H
   0.267   0.0837    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,345,026
Number of extensions: 72962
Number of successful extensions: 262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 69
Length of query: 96
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,970,691
Effective search space: 169003494
Effective search space used: 169003494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.2 bits)