RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4492
         (96 letters)



>d1ctfa_ d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal domain
          {Escherichia coli [TaxId: 562]}
          Length = 68

 Score = 47.3 bits (113), Expect = 2e-09
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 28 FTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLA 87
          F V L       KV +IK ++G   G+ L +AK  VES PA +K  V+K++AEALK +L 
Sbjct: 2  FDVILKAAGAN-KVAVIKAVRGAT-GLGLKEAKDLVESAPAALKEGVSKDDAEALKKALE 59

Query: 88 KVGGEVSV 95
          + G EV V
Sbjct: 60 EAGAEVEV 67


>d1dd3a2 d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-terminal
          domain {Thermotoga maritima [TaxId: 2336]}
          Length = 71

 Score = 46.2 bits (110), Expect = 6e-09
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 28 FTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIP---AVVKTDVTKEEAEALKA 84
          F V L  +    K+ +IK ++ +  G+ L +AK  VE      AV+K+ V+KEEAE +K 
Sbjct: 2  FDVVLKSFGQN-KIQVIKVVREIT-GLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKK 59

Query: 85 SLAKVGGEVSV 95
           L + G EV +
Sbjct: 60 KLEEAGAEVEL 70


>gi|226355461|ref|YP_002785201.1|(51-121:121) putative 50S
          ribosomal protein L7/L12 [Deinococcus deserti VCD115]  
          gi|226317451|gb|ACO45447.1| putative 50S ribosomal
          protein L7/L12 [Deinococcus deserti VCD115]  E=1e-26
          s/c=1.72 id=88% cov=101%
          Length = 71

 Score = 46.1 bits (110), Expect = 6e-09
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 25 QSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKA 84
          ++ F V LV      K+ +IKEI+ +  G+ L +AK   E    V+K  ++K++AE +KA
Sbjct: 3  KTEFDVVLVDAGAS-KINVIKEIRAIT-GLGLKEAKDMSEK-GGVLKEGISKDDAEKIKA 59

Query: 85 SLAKVGGEVSV 95
           L   G +V +
Sbjct: 60 QLEGAGAKVEL 70


>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG
          {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 285

 Score = 24.7 bits (53), Expect = 2.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 66 IPAVVKTDVTKEEAEALKASLAKVGGEVS 94
          +PAV    V + E  +LK+ +   G  VS
Sbjct: 7  VPAVSHDLVGEAEIASLKSQIRASGLTVS 35


>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG,
          phenylalanine-repressible {Mycobacterium tuberculosis
          [TaxId: 1773]}
          Length = 462

 Score = 24.5 bits (53), Expect = 2.5
 Identities = 5/16 (31%), Positives = 7/16 (43%)

Query: 74 VTKEEAEALKASLAKV 89
              E   L+  LA+V
Sbjct: 59 TVPSEIVRLQEQLAQV 74


>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG
          {Burkholderia pseudomallei [TaxId: 28450]}
          Length = 308

 Score = 23.5 bits (50), Expect = 5.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 66 IPAVVKTDVTKEEAEALKASLAKVGGEVS 94
          IPAV    +   +A  LKA +   G  VS
Sbjct: 10 IPAVDHPLIDAADAAELKAKVLASGLTVS 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.128    0.321 

Gapped
Lambda     K      H
   0.267   0.0734    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 307,798
Number of extensions: 12967
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 12
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (21.9 bits)