BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4493
(323 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242022338|ref|XP_002431597.1| ATP-dependent DNA helicase Q1, putative [Pediculus humanus
corporis]
gi|212516905|gb|EEB18859.1| ATP-dependent DNA helicase Q1, putative [Pediculus humanus
corporis]
Length = 652
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 167/340 (49%), Positives = 215/340 (63%), Gaps = 70/340 (20%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---------------- 92
+PWS +V ++LK F +++FRP QL IN L K+D I+IMPTG
Sbjct: 64 FPWSQKVDNLLKENFKISEFRPFQLEVINATLSKEDVILIMPTGGGKSLCYQLPALVDKG 123
Query: 93 --------------KLLKKKKI---CLMTESSS------------------LKLLYVSPE 117
+++ KKI LM ++S KL+YV+PE
Sbjct: 124 ITLVVSPLVSLMEDQVMALKKINYPALMLSANSSKEDVKLVTAALQDSCPKHKLIYVTPE 183
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
KLAKSK FM++LQK ++ G R+AIDEVHCCS+WGHDFRPDY YL ILK MFP VP+LG
Sbjct: 184 KLAKSKRFMSQLQKCHQQGRFTRLAIDEVHCCSTWGHDFRPDYNYLGILKDMFPGVPLLG 243
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTAT+T+KV DVQKML I+ C+VIKA FNRPNL+YEV +KP++Q + LD L + + +F
Sbjct: 244 LTATSTSKVTADVQKMLNIQGCLVIKATFNRPNLYYEVVLKPSSQSENLDLLENWLKNKF 303
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SI 279
N+SGIIYTT+IKECE+L +ELR RG++ YHA L++ V ++
Sbjct: 304 SNKSGIIYTTAIKECEELTKELRKRGIKAGVYHAMLDAEVRSKMHTKWMSNEYQVIVATV 363
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
AFG+GIDKP+VRFVIHH LSKSMENFYQ S G GK+S
Sbjct: 364 AFGMGIDKPDVRFVIHHSLSKSMENFYQESGRAGRDGKNS 403
>gi|193606281|ref|XP_001943152.1| PREDICTED: ATP-dependent DNA helicase Q1-like [Acyrthosiphon pisum]
Length = 599
Score = 317 bits (813), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 165/336 (49%), Positives = 212/336 (63%), Gaps = 70/336 (20%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAI-------------------- 86
TD+PW +RV+ LK+ F L FR QLAAINI L K DAI
Sbjct: 66 TDFPWHERVKDTLKTVFKLDSFRSQQLAAINITLSKHDAILIMPTGGGKSLCYQLPALID 125
Query: 87 -----IIMPTGKLLKKKKIC-------------------------LMTE-SSSLKLLYVS 115
++ P L++ + I +MT+ S LKL+Y +
Sbjct: 126 QGFTLVVSPMVSLMEDQIIQIQKLDVNAKMISSYSSKEDVKLLFQMMTDIKSGLKLVYCT 185
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE++ KSK+FM KLQK + L+RIAIDEVHCC++WGHDFRPDY +L+I K MFPD+PI
Sbjct: 186 PERIVKSKTFMNKLQKAHSLKYLSRIAIDEVHCCTTWGHDFRPDYTHLTIFKPMFPDIPI 245
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
LGLTATA++KV++D QK+LQI+ C ++KA FNRPNL+YEV+ KP +K C+DELA L+
Sbjct: 246 LGLTATASSKVIVDTQKLLQIQGCALLKASFNRPNLYYEVKWKPEGKK-CVDELASLLKN 304
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------ 277
+F+NQSGIIYTTSIK+CE LR++L+ G RV +YHA+LE +
Sbjct: 305 KFKNQSGIIYTTSIKDCESLRKDLKEHGCRVGSYHAQLEGPLRSKVHRKWLNDEYQAVVA 364
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFGLGIDKPNVRFVIHH LSKS+ENFYQ S G
Sbjct: 365 TIAFGLGIDKPNVRFVIHHTLSKSIENFYQESGRAG 400
>gi|321475158|gb|EFX86121.1| RecQ1-like protein [Daphnia pulex]
Length = 624
Score = 316 bits (810), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 165/335 (49%), Positives = 210/335 (62%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL---------- 95
D+PW+ ++ LK F++ FRP QL+A+N L D I+IMPT GK L
Sbjct: 62 DFPWTKKLYQTLKDAFHIEKFRPMQLSAMNATLKGHDVILIMPTGGGKSLCYQLPALVSD 121
Query: 96 ----------------------------------KKKKICL----MTES-SSLKLLYVSP 116
K+++ + MT++ SSLKLLYV+P
Sbjct: 122 GITLVITPLVSLMEDQLASLEKLGIEAAKLNASSSKEEVNMVHLAMTDAKSSLKLLYVTP 181
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EKLAKSK FMTKLQKMY+ A +A+DEVHCCS WGHDFRPDY+YL +L+++FP VPI+
Sbjct: 182 EKLAKSKRFMTKLQKMYQIKRFACVAVDEVHCCSQWGHDFRPDYKYLGVLRSLFPTVPIV 241
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V DVQKML +++ +V KA FNRPNL+YEVRIKP+ QK+C+DEL L++ R
Sbjct: 242 GLTATATLNVTNDVQKMLNMKNSLVFKASFNRPNLYYEVRIKPSTQKECIDELVQLLTNR 301
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
F QSGIIYTTS+K+C+ L ELR + RV++YHA LE +
Sbjct: 302 FHGQSGIIYTTSVKDCDQLASELRQQKCRVASYHASLEPADRTEVHTGWRENRYQAVVAT 361
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
IAFG+GIDKP+VRFVIHH +SKSMENFYQ S G
Sbjct: 362 IAFGMGIDKPDVRFVIHHSISKSMENFYQESGRAG 396
>gi|443429393|gb|AGC92678.1| ATP-dependent DNA helicase Q1-like protein [Heliconius erato]
Length = 632
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 160/334 (47%), Positives = 202/334 (60%), Gaps = 69/334 (20%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---------------- 92
Y WSD V+ +LK F + FRP QL+AIN L + I++MPTG
Sbjct: 63 YEWSDNVKKILKDVFKIETFRPKQLSAINATLSGQHTIVVMPTGAGKSLCYQLPALVKPG 122
Query: 93 ----------------KLLKKKKI--CLMTESSS-----------------LKLLYVSPE 117
+ LK K+I LMT +SS +KLLYV+PE
Sbjct: 123 LTIVISPLVSLMEDQVRSLKNKEIPAMLMTSTSSKEETSTALNALKDKNTKIKLLYVTPE 182
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
+LAKSK FM LQK + G L RIAIDEVHCCS WGHDFRPDY+YL IL MFP++PILG
Sbjct: 183 RLAKSKRFMANLQKCFAEGRLQRIAIDEVHCCSQWGHDFRPDYKYLGILTNMFPNIPILG 242
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT V+ DVQKML I+ C++IK+ FNRPNL+Y++ KP +Q+DCL L L+ R+
Sbjct: 243 LTATATAHVLTDVQKMLSIQGCLIIKSTFNRPNLYYKILEKPTSQEDCLSILEKLLKYRY 302
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSI 279
R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+ ++
Sbjct: 303 RGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKARSDVHMKWHAKEYQAIVATV 362
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 363 AFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 396
>gi|261335969|emb|CBH09254.1| putative RecQ Helicase [Heliconius melpomene]
Length = 632
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 161/334 (48%), Positives = 201/334 (60%), Gaps = 69/334 (20%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---------------- 92
Y WSD+V+ LK F + FRP QL+AIN L + I++MPTG
Sbjct: 63 YEWSDKVKKTLKDVFKIEAFRPKQLSAINATLSGQHTIVVMPTGAGKSLCYQLPAIVKPG 122
Query: 93 ----------------KLLKKKKI--CLMTESSS-----------------LKLLYVSPE 117
+ LK K I LMT +SS +KLLYV+PE
Sbjct: 123 LTIVISPLVSLMEDQVRSLKNKDIPAMLMTSTSSKEETSTALNALKDKTTKIKLLYVTPE 182
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
+LAKSK FM LQK + G L RIAIDEVHCCS WGHDFRPDY+YL IL MFP++PILG
Sbjct: 183 RLAKSKRFMANLQKCFAEGRLQRIAIDEVHCCSQWGHDFRPDYKYLGILTNMFPNIPILG 242
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL L L+ R+
Sbjct: 243 LTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSILEKLLKYRY 302
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSI 279
R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+ ++
Sbjct: 303 RGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAKEYQAIVATV 362
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 363 AFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 396
>gi|332027185|gb|EGI67277.1| ATP-dependent DNA helicase Q1 [Acromyrmex echinatior]
Length = 599
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 157/335 (46%), Positives = 211/335 (62%), Gaps = 25/335 (7%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++ WS ++ LK+ F + R QL +N + K+D I+IMPT S ++ +V+
Sbjct: 76 DFIWSVKLTETLKNVFKIEKLRELQLPTMNAIMSKEDVILIMPTGGGKSLCYQLPAVMSK 135
Query: 62 KFN-----LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSP 116
L +QL + +K + + +K L+ +S LKL+Y++P
Sbjct: 136 GITVVISPLVSLMEDQLHGLRKLDIKATMLCAKADKESIKMTMTALVDKSCPLKLIYITP 195
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
E +AKS FM KLQK Y+ G L R AIDEVHCCS WGHDFRPDY++L +LK+MFP VPIL
Sbjct: 196 EYMAKSNRFMNKLQKAYELGHLERFAIDEVHCCSQWGHDFRPDYKFLGVLKSMFPGVPIL 255
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATA TK+++DVQKML I C++++A FNRPNL+YEVR KPA ++ CL + +L+ R
Sbjct: 256 GLTATAPTKIIVDVQKMLDISGCLILRASFNRPNLYYEVRRKPADKETCLAMIENLLKNR 315
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
F +SGIIYTT+IK+ E L +LR RG++ YHA LE+N +
Sbjct: 316 FNGKSGIIYTTTIKDAEQLTTDLRGRGIKAGCYHAMLEANYRSEVYSKWMSGKYQVVVAT 375
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
IAFGLGIDKP+VRFVIHHC+SKSMENFYQ S G
Sbjct: 376 IAFGLGIDKPDVRFVIHHCVSKSMENFYQESGRAG 410
>gi|238859683|ref|NP_001154966.1| RecQ protein 1 [Nasonia vitripennis]
Length = 598
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 167/375 (44%), Positives = 213/375 (56%), Gaps = 75/375 (20%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTD 67
DR + +L K L D N L + L KK+ + +PWS ++ L F + +
Sbjct: 43 EDRKKVLLDRKQKLKD---NALLKKSFNLSKKNWDL---EKFPWSKNLKKALTDVFKIKE 96
Query: 68 FRPNQLAAINIALLKKDAIIIMPTG----------------------------------- 92
RP QL +N ++ +D I+IMPTG
Sbjct: 97 LRPLQLQTMNASMSNEDVILIMPTGGGKSLCYQLPAVIGKGVTIVVSPLVALMEDQLNGL 156
Query: 93 -------KLLKKKK---------ICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAG 136
K+L K L+ S LKL+YV+PE +AKS FM+KLQK ++
Sbjct: 157 HKLKVNAKMLSAKAPKEDVKAIMTGLVDNKSDLKLVYVTPEYMAKSNRFMSKLQKAFEMK 216
Query: 137 CLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQI 196
L R AIDEVHCCS WGHDFRPDY++L ILK+MFPDVP+LGLTATA K+++DVQKML I
Sbjct: 217 RLDRFAIDEVHCCSQWGHDFRPDYKFLGILKSMFPDVPLLGLTATAPAKIIVDVQKMLDI 276
Query: 197 EDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLR 256
+ C+V++A FNRPNLFYEVR KP+ ++ CL+ + L+ RF +SGIIYTT+IKE E L
Sbjct: 277 QGCLVLRASFNRPNLFYEVRRKPSDKEACLEMIVSLLKNRFEGKSGIIYTTTIKESEQLT 336
Query: 257 EELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDKPNVRFVIHHCL 298
+LR RGLR+ YHA LE +IAFGLGIDKP+VRFVIHHCL
Sbjct: 337 TDLRARGLRIGCYHAMLEPEYRTKVYSKWFSGEYQAVVATIAFGLGIDKPDVRFVIHHCL 396
Query: 299 SKSMENFYQVSIAFG 313
SKSMEN YQ S G
Sbjct: 397 SKSMENLYQESGRAG 411
>gi|383853399|ref|XP_003702210.1| PREDICTED: ATP-dependent DNA helicase Q1-like [Megachile rotundata]
Length = 597
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 160/337 (47%), Positives = 213/337 (63%), Gaps = 29/337 (8%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++ WS +R LK F + R QL +N + +D I+IMPT S ++ +V+
Sbjct: 76 DFSWSKDLRKALKDVFKIDKLRELQLPTMNAVMSNEDVILIMPTGGGKSLCYQLPAVISK 135
Query: 62 KFN-----LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKI--CLMTESSSLKLLYV 114
L +QL ++ +K A+++ G K I L+ + S LKL+YV
Sbjct: 136 GITIVVSPLVSLMEDQLHGLHKNNVK--AMMLSAKGNKEDVKIIMNALIDKKSDLKLIYV 193
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PE +AKS FM+KLQK ++ L R AIDEVHCCS WGHDFRPDY++L ILK+MFP VP
Sbjct: 194 TPEYMAKSNRFMSKLQKAFELKRLDRFAIDEVHCCSQWGHDFRPDYKFLGILKSMFPGVP 253
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
ILGLTATA K+++DVQKML I+ C+V++A FNRPNLFYEVR KP+ + CL + +L+
Sbjct: 254 ILGLTATAPAKIIVDVQKMLDIQGCLVLRATFNRPNLFYEVRRKPSDKSTCLAMIENLLK 313
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------ 276
RF+++SGIIYTT+IK+ E L ELR+ G++V YHA LE
Sbjct: 314 NRFKDKSGIIYTTTIKDAEQLTTELRSLGIKVGCYHAMLEPEYRSEVYSKWISGKYQAVV 373
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFGLGIDKP+VRFVIHHC+SKSMENFYQ S G
Sbjct: 374 ATIAFGLGIDKPDVRFVIHHCISKSMENFYQESGRAG 410
>gi|322779042|gb|EFZ09441.1| hypothetical protein SINV_80478 [Solenopsis invicta]
Length = 596
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 157/336 (46%), Positives = 201/336 (59%), Gaps = 70/336 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL---------- 95
D+ WS ++R LK F + + R QL +N + K+D I+IMPT GK L
Sbjct: 71 DFAWSAKLRKTLKEVFKIEELRELQLPTMNAIMSKEDVILIMPTGGGKSLCYQLPAVMSK 130
Query: 96 --------------------------KKKKIC--------------LMTESSSLKLLYVS 115
K +C L+ +SS LKL+YV+
Sbjct: 131 DGITVVVSPLISLMEDQLHGLRKVDVKANMLCAKMDKESVKTIMGALVDKSSPLKLIYVT 190
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE +AKS FM KLQK Y+ G L R AIDEVHCCS WGHDFRPDY++L +LK+MFP +PI
Sbjct: 191 PEYMAKSNRFMNKLQKAYELGRLERFAIDEVHCCSQWGHDFRPDYKFLGVLKSMFPGIPI 250
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
LGLTATA K+++DVQK+L I C+V++A FNR NL+YEVR KPA ++ CL + +L+
Sbjct: 251 LGLTATAPAKIIVDVQKILDISGCLVLRASFNRSNLYYEVRRKPAEKETCLAMMENLLKT 310
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
RF +SGIIYTT+IK+ E L +LR RG++V YHA LE++
Sbjct: 311 RFNGKSGIIYTTTIKDAEQLTSDLRGRGIKVGCYHAMLEADYRSEVYSKWMSGKYQAVIA 370
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFGLGIDKP+VRFVIHHCLSKSMENFYQ S G
Sbjct: 371 TIAFGLGIDKPDVRFVIHHCLSKSMENFYQESGRAG 406
>gi|340717015|ref|XP_003396985.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q1-like
[Bombus terrestris]
Length = 596
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 154/335 (45%), Positives = 208/335 (62%), Gaps = 25/335 (7%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++ WS +R LK F + R QL +N + D I+IMPT S ++ +V+
Sbjct: 75 DFSWSKDLRKALKDVFKIDKLRELQLPTMNAIMSNVDVILIMPTGGGKSLCYQLPAVISK 134
Query: 62 KFN-----LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSP 116
L +QL + +K + + + +K L+ + S LKL+YV+P
Sbjct: 135 GITIVVSPLISLMEDQLHGLQKHNVKARMLSAKGSKENVKVIMNALVDKKSDLKLIYVTP 194
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
E +AKS FM KLQK ++ L AIDEVHCCS WGHDFRPDY++L ILK+MFP VP+L
Sbjct: 195 EYMAKSNRFMNKLQKAFEMKRLDCFAIDEVHCCSQWGHDFRPDYKFLGILKSMFPGVPVL 254
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATA K+++D+QKML I+ C+V++A FNRPNLFYEVR KP ++ CL + +L+ R
Sbjct: 255 GLTATAPAKIIVDIQKMLDIQGCLVLRATFNRPNLFYEVRRKPTDKETCLAMIENLLKNR 314
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
F+++SGIIYTT+IK+ E L +LR GL+V YHA LE++ +
Sbjct: 315 FKDKSGIIYTTTIKDAEQLTTDLRALGLKVGCYHAMLEADYRSEVYSKWISGKYQAVVAT 374
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
IAFGLGIDKP+VRFVIHHC+SKSMENFYQ S G
Sbjct: 375 IAFGLGIDKPDVRFVIHHCISKSMENFYQESGRAG 409
>gi|350408702|ref|XP_003488482.1| PREDICTED: ATP-dependent DNA helicase Q1-like [Bombus impatiens]
Length = 602
Score = 290 bits (743), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 154/335 (45%), Positives = 207/335 (61%), Gaps = 25/335 (7%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++ WS +R LK F + R QL +N + D I+IMPT S ++ +V+
Sbjct: 81 DFSWSKDLRKALKDVFKIDKLRELQLPTMNAIMSNVDVILIMPTGGGKSLCYQLPAVISK 140
Query: 62 KFN-----LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSP 116
L +QL + +K + + + +K L+ + S LKL+YV+P
Sbjct: 141 GITIVVSPLISLMEDQLHGLQKHNVKAGMLSAKGSKENVKVIMNALVDKKSDLKLIYVTP 200
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
E +AKS FM KLQK ++ L AIDEVHCCS WGHDFRPDY++L ILK+MFP VP+L
Sbjct: 201 EYMAKSNRFMNKLQKAFEMKRLDCFAIDEVHCCSQWGHDFRPDYKFLGILKSMFPGVPVL 260
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATA K+++D+QKML I+ C+V++A FNRPNLFYEVR KP + CL + +L+ R
Sbjct: 261 GLTATAPAKIIVDIQKMLDIQGCLVLRATFNRPNLFYEVRRKPTDKDTCLAMIENLLKNR 320
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
F+++SGIIYTT+IK+ E L +LR GL+V YHA LE++ +
Sbjct: 321 FKDKSGIIYTTTIKDAEQLTTDLRALGLKVGCYHAMLEADYRSEVYSKWISGKYQAVVAT 380
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
IAFGLGIDKP+VRFVIHHC+SKSMENFYQ S G
Sbjct: 381 IAFGLGIDKPDVRFVIHHCISKSMENFYQESGRAG 415
>gi|380018171|ref|XP_003693009.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q1-like
[Apis florea]
Length = 596
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 153/335 (45%), Positives = 209/335 (62%), Gaps = 25/335 (7%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++ WS ++ LK+ F + R QL +N + +D I+IMPT S ++ +V+
Sbjct: 75 DFTWSKDLKKTLKNVFKIEKLRELQLPTMNAIMSNEDVILIMPTGGGKSLCYQLPAVISK 134
Query: 62 KFN-----LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSP 116
L +Q+ + +K + + +K L+ + S LKL+YV+P
Sbjct: 135 GITIVVSPLLSLMEDQIHGLQKHNVKAGMLSAKCNKENVKIIMNALIDKKSDLKLIYVTP 194
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
E +AKS FM KLQK ++ L R AIDEVHCCS WGHDFRPDY++L ILK+MFP VPIL
Sbjct: 195 EYMAKSNRFMNKLQKAFEMKRLDRFAIDEVHCCSQWGHDFRPDYKFLGILKSMFPGVPIL 254
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATA K+++DVQKML I+ C+V++A FNRPNLFYEVR KP + CL + +L+ R
Sbjct: 255 GLTATAPAKIIVDVQKMLDIQGCLVLRATFNRPNLFYEVRRKPTDKDTCLAMIENLLKNR 314
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
F+++SGIIYTT+IK+ E L +LR GL+V YHA LE++ +
Sbjct: 315 FKDKSGIIYTTTIKDAEQLTTDLRAVGLKVGCYHAMLEADYRSEVYSKWISGKYQAVVAT 374
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
IAFGLGIDKP+VR+VIHHC+SKSME+FYQ S G
Sbjct: 375 IAFGLGIDKPDVRYVIHHCISKSMESFYQESGRAG 409
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTD 67
DR + +++ K L D + L ++++ KKD D+ WS ++ LK+ F +
Sbjct: 41 EDRKKILIQRKEKLQD---DALLKKSLSVSKKDW---SKEDFTWSKDLKKTLKNVFKIEK 94
Query: 68 FRPNQLAAINIALLKKDAIIIMPTG 92
R QL +N + +D I+IMPTG
Sbjct: 95 LRELQLPTMNAIMSNEDVILIMPTG 119
>gi|308512775|gb|ADO33041.1| recQ helicase [Biston betularia]
Length = 446
Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 148/332 (44%), Positives = 196/332 (59%), Gaps = 69/332 (20%)
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG------------------ 92
WSD + + F + +FRP QL+AI K+++I++MPTG
Sbjct: 4 WSDAIEKIRIDAFQIDEFRPKQLSAIKFNSSKQNSIVVMPTGAGKSLCYQLPALVEPGLT 63
Query: 93 --------------KLLKKKKI-------------------CLMTESSSLKLLYVSPEKL 119
+ L K+ I L ++S +KLLYV+PE+
Sbjct: 64 IVISPLISLMEDQIRSLTKRNIPAKHMTSSSPKEETNAALNILKDKNSDIKLLYVTPERF 123
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
AKSK FM+ LQK Y G L RIAIDEVHCCS WGHDFRPDY++L IL MFP++PILGLT
Sbjct: 124 AKSKRFMSNLQKCYADGRLQRIAIDEVHCCSQWGHDFRPDYKFLGILSNMFPNIPILGLT 183
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATAT +V+ DVQK+L I C++IK+ FNRPNL+Y KP +Q DCL L L+ R++N
Sbjct: 184 ATATARVLNDVQKILNIPGCLIIKSRFNRPNLYYTAIEKPTSQDDCLSILEKLLKHRYKN 243
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAF 281
+SGIIYT SIK+ E++ + L RGL+V YHA ++S+ ++AF
Sbjct: 244 ESGIIYTNSIKDTEEISQGLCKRGLKVGCYHANMDSDARTKVHLKWHDKHYQAIVATVAF 303
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
G+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 304 GMGIDKPDVRFVIHHTISKSMENYYQESGRAG 335
>gi|328789066|ref|XP_396807.4| PREDICTED: ATP-dependent DNA helicase Q1-like [Apis mellifera]
Length = 596
Score = 286 bits (732), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 156/345 (45%), Positives = 210/345 (60%), Gaps = 45/345 (13%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSD 53
++ WS ++ LK F + R QL +N + +D I+IMPT S
Sbjct: 75 DFTWSKNLKKTLKDVFKIEKLRELQLPTMNAIMSNEDVILIMPTGGGKSLCYQLPAVISK 134
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINI--ALL-----KKDAIIIMPTGKLLKKKKICLMTES 106
+ V+ +L + + + L N+ +L K++ IIM L+ +
Sbjct: 135 GITIVVSPLLSLMEDQIHGLQKHNVKAGMLSAKCNKENVKIIMNA----------LIDKK 184
Query: 107 SSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
S LKL+YV+PE +AKS FM KLQK ++ L R AIDEVHCCS WGHDFRPDY++L IL
Sbjct: 185 SDLKLIYVTPEYMAKSNRFMNKLQKAFEMKRLDRFAIDEVHCCSQWGHDFRPDYKFLGIL 244
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
K+MFP VPILGLTATA K+++DVQKML I+ C+V++A FNRPNLFYEVR KP + CL
Sbjct: 245 KSMFPGVPILGLTATAPAKIIVDVQKMLDIQGCLVLRATFNRPNLFYEVRRKPTDKDTCL 304
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------- 276
+ +L+ RF+++SGIIYTT+IK+ E L +LR GL+V YHA LE++
Sbjct: 305 AMIENLLKNRFKDKSGIIYTTTIKDAEQLTTDLRAVGLKVGCYHAMLEADYRSEVYSKWI 364
Query: 277 --------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFGLGIDKP+VR+VIHH +SKSME+FYQ S G
Sbjct: 365 SGKYQAVVATIAFGLGIDKPDVRYVIHHSISKSMESFYQESGRAG 409
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTD 67
DR + +++ K L R + L ++++ KKD D+ WS ++ LK F +
Sbjct: 41 EDRKKILIQRKEKL---RDDALLKKSLSVSKKDW---SKEDFTWSKNLKKTLKDVFKIEK 94
Query: 68 FRPNQLAAINIALLKKDAIIIMPTG 92
R QL +N + +D I+IMPTG
Sbjct: 95 LRELQLPTMNAIMSNEDVILIMPTG 119
>gi|312379036|gb|EFR25440.1| hypothetical protein AND_09184 [Anopheles darlingi]
Length = 532
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 150/329 (45%), Positives = 193/329 (58%), Gaps = 70/329 (21%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--------------- 93
+ WS +VR L F+L DFRP QL IN L D +++ PTG
Sbjct: 70 FDWSAKVRKTLSEVFHLQDFRPQQLRTINALLAGHDVLLLAPTGGGKSLCFQLPALITPG 129
Query: 94 -----------------LLKKKKI-----CLMTE---------------SSSLKLLYVSP 116
L+K KI C TE S++KLLYV+P
Sbjct: 130 LTVVISPLVSLMEDQVWSLQKLKIAAKLLCSTTERSEANEILRSMANPSQSTVKLLYVTP 189
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
E+++KSK FM+ LQK + G L R AIDEVHCCS WGHDFRPDY+YL +LK +FP +P+L
Sbjct: 190 ERMSKSKRFMSALQKCFSNGQLDRFAIDEVHCCSQWGHDFRPDYKYLGVLKELFPKIPVL 249
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
G+TATAT V+ DVQKML+I + ++ A FNRPNL+Y V KP ++KD + L L+ +R
Sbjct: 250 GVTATATAAVIKDVQKMLRIPNSILFVASFNRPNLYYHVLEKPLSKKDQYEVLESLLEKR 309
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
F QSGI+YT SIK+ E++ EELR RGL+V+ YHA L + +
Sbjct: 310 FHKQSGIVYTFSIKDAEEISEELRERGLKVAPYHATLPAADRTKIHQLWIANRLQAVIAT 369
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+AFG+GIDKP+VRFVIHH LSKSMENFYQ
Sbjct: 370 VAFGMGIDKPDVRFVIHHTLSKSMENFYQ 398
>gi|346466659|gb|AEO33174.1| hypothetical protein [Amblyomma maculatum]
Length = 586
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 151/336 (44%), Positives = 202/336 (60%), Gaps = 69/336 (20%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG-------------- 92
+D+PWS V+ L+S F++ R QL AIN+ L KD I+IM TG
Sbjct: 9 SDFPWSQHVKEKLESVFHIGSLRSMQLPAINVTLSNKDCILIMSTGGGKSLCYQLPALIS 68
Query: 93 -----------KLLKKKKICLMT--------------------------ESSSLKLLYVS 115
L++ + + L + ESSSLKLLYV+
Sbjct: 69 KGITVVVSPLLSLMEDQVMALHSLSYPVAMLSANVSMKETSRILKSIADESSSLKLLYVT 128
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PEK+AKSK FM+ L+K Y+ AR+AIDEVHCCS WGHDFRPDY+YL+I+K FP VPI
Sbjct: 129 PEKMAKSKRFMSTLEKAYQRNRFARLAIDEVHCCSQWGHDFRPDYKYLAIMKRHFPKVPI 188
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
LG+TATA+ ++ DVQKML IE VV++AP +RPNL YEV KPA + ++ +A L+
Sbjct: 189 LGVTATASASIVADVQKMLDIECSVVLRAPLDRPNLVYEVLPKPAGSDEAVNMVAKLILG 248
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE----SNV-------------- 277
RF++Q GI+Y SI+E ++L ++L+ G+ +YHA++E SNV
Sbjct: 249 RFKDQCGIVYCFSIRETDELADQLKGYGIAADSYHAQMEPQRRSNVHTSWMRGELSVIVA 308
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKPNVRFVIHH LSKS+EN+YQ S G
Sbjct: 309 TIAFGMGIDKPNVRFVIHHTLSKSIENYYQESGRAG 344
>gi|443695320|gb|ELT96261.1| hypothetical protein CAPTEDRAFT_131881 [Capitella teleta]
Length = 570
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/335 (45%), Positives = 198/335 (59%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK--------LLKK 97
D+ WS + S F ++D RP QL+ +N+ L K+ I++MPT GK LL K
Sbjct: 76 DHLWSKELSEKQSSVFGISDLRPLQLSTMNLTLSNKNCILVMPTGGGKSLCFQLPALLSK 135
Query: 98 KK-------ICLMTES----------------------------------SSLKLLYVSP 116
+ LM + S L+LLYV+P
Sbjct: 136 GVTLVISPLVSLMEDQLFALENLNISAAMLNASSTKEHVKFVHSEMTSTKSDLRLLYVTP 195
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EKLAKSK FM+ L+KMY LAR AIDEVHCCS WGHDFRPDY++L ILK FP PIL
Sbjct: 196 EKLAKSKRFMSYLEKMYTQNRLARFAIDEVHCCSQWGHDFRPDYKFLGILKRQFPKAPIL 255
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT+ V+ DV+K+LQI DCV++KA FNR NLFYEVR KP+ ++E+ DL+ R
Sbjct: 256 GLTATATSSVLNDVKKILQIPDCVILKASFNRANLFYEVRPKPSNAHALVEEIVDLIQTR 315
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
FR+QSGI+Y + K+ E++ +L++ GL + YHA++++ +
Sbjct: 316 FRDQSGIVYCLTQKDSEEMARQLQSHGLTAACYHAQMDAKHRSLAHRKWTTNKIQVVVAT 375
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
IAFG+GIDKPNVRFVIHH +SKSMEN+YQ S G
Sbjct: 376 IAFGMGIDKPNVRFVIHHTISKSMENYYQESGRAG 410
>gi|387015566|gb|AFJ49902.1| ATP-dependent DNA helicase Q1 [Crotalus adamanteus]
Length = 652
Score = 281 bits (718), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 140/335 (41%), Positives = 204/335 (60%), Gaps = 25/335 (7%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++PWS ++R VL+ F L +FRP QL IN + +D ++MPT S ++ +
Sbjct: 72 DFPWSTKIRDVLQKSFGLQNFRPLQLETINATMAGRDVFLVMPTGGGKSLCYQLPAEGSP 131
Query: 62 KFNLT-----DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSP 116
F L +QL + + + + + +K +++ +S LKLLYV+P
Sbjct: 132 GFTLVICPLISLMEDQLMMLEQLGVSATLLNASSSKEHVKWVHAEMLSRNSQLKLLYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM+KL+K Y+ G L RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ P++
Sbjct: 192 EKIAKSKMFMSKLEKAYQTGQLTRIAVDEVHCCSQWGHDFRPDYKLLGILKRQFPNAPLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D Q +L + C++ A FNRPNL+YEVR KP++ ++C++++ L++ R
Sbjct: 252 GLTATATGHVLRDAQNILCVPKCIIFTASFNRPNLYYEVRQKPSSAQNCIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ SGIIY S K+ E + L+ G++ YHA +E +
Sbjct: 312 YKGLSGIIYCFSQKDAEQVTMSLQKLGIKAGTYHANMEPKDKSRVHKRWCANEIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|197100975|ref|NP_001124706.1| ATP-dependent DNA helicase Q1 [Pongo abelii]
gi|75070978|sp|Q5RF63.1|RECQ1_PONAB RecName: Full=ATP-dependent DNA helicase Q1; AltName:
Full=DNA-dependent ATPase Q1; AltName: Full=RecQ
protein-like 1
gi|55725460|emb|CAH89594.1| hypothetical protein [Pongo abelii]
Length = 649
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 143/335 (42%), Positives = 203/335 (60%), Gaps = 25/335 (7%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++PWS +V+ VL++ F L FRP QL IN+ + K+ ++MPT ++ ++
Sbjct: 72 DFPWSGKVKDVLQNVFKLQKFRPLQLETINVTMAGKEVFLVMPTGGGKGLCYQLPALCSD 131
Query: 62 KFNLT-----DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSP 116
F L +QL + + + + + +K ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L IE C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + LRN G+ AYHA LE +
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTVSLRNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|291228382|ref|XP_002734149.1| PREDICTED: RecQ protein-like (DNA helicase Q1-like)-like
[Saccoglossus kowalevskii]
Length = 785
Score = 280 bits (715), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 147/341 (43%), Positives = 212/341 (62%), Gaps = 36/341 (10%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++PWS ++ + +S F + ++RP+QL A+N L +D I+IMPT S ++ +++
Sbjct: 69 DFPWSKKLDELSRSVFKIDEYRPHQLEAMNATLSGRDLILIMPTGSGKSLCFQLPALISK 128
Query: 62 KFN-----LTDFRPNQL-----AAINIALLKKDAIIIMPTGKLLKKKKICLMT-ESSSLK 110
L +QL +N ALL D+ T + C++ S LK
Sbjct: 129 GITLVVSPLVSLMEDQLMSLDMCGVNGALLNADS-----TKEHKNYVHKCMIDPHSQDLK 183
Query: 111 LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170
+LYV+PEK+AKSK FM+KL+KMYKAG ARI IDEVHCCS WGHDFR DY+ L ILK F
Sbjct: 184 ILYVTPEKIAKSKMFMSKLEKMYKAGKFARIVIDEVHCCSQWGHDFRRDYKVLGILKRQF 243
Query: 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA 230
P+VP+LGLTATAT ++ DV+ +L + C+ ++A ++RPNL+YEVR KP ++C+ E++
Sbjct: 244 PEVPLLGLTATATQHILDDVKNLLNVPYCMTMRASYDRPNLYYEVRRKPKKHEECVAEIS 303
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN-------------- 276
L++ +F+ Q GIIY S K+CE + +LR G+ YH+ ++S+
Sbjct: 304 KLLNGKFKGQIGIIYCFSRKDCETIAADLRKGGIEALPYHSDIDSSRRSQIHRAWAKETI 363
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKPNVRFVIHH +SKS+EN+YQ S G
Sbjct: 364 QVVVATIAFGMGIDKPNVRFVIHHTMSKSVENYYQESGRAG 404
>gi|241829138|ref|XP_002414740.1| DNA helicase recq1, putative [Ixodes scapularis]
gi|215508952|gb|EEC18405.1| DNA helicase recq1, putative [Ixodes scapularis]
Length = 619
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 146/336 (43%), Positives = 192/336 (57%), Gaps = 69/336 (20%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG----------KLLK 96
+ YPWS V L S F + RP QL AIN+ + D I+IMPTG LL
Sbjct: 61 STYPWSAGVLDKLTSVFKMKGLRPTQLPAINVTMSNHDCIVIMPTGGGKSLCFQLPALLS 120
Query: 97 ------------------------------------KKKICLMTES-----SSLKLLYVS 115
+KK +T + S +KL+YV+
Sbjct: 121 PGLTVVVSPLVSLMEDQVMALERLSYPVAMLSATTPQKKTSAITNAMDDKKSPIKLIYVT 180
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PEK+AKSK FM KL+K Y+ GC +R+AIDEVHCCS WG+DFRPDY+YL I+K FP VPI
Sbjct: 181 PEKMAKSKRFMAKLEKAYQKGCFSRLAIDEVHCCSQWGNDFRPDYKYLGIMKRQFPKVPI 240
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+GLTATA+ ++ D+QKML IEDCVV++AP +RPNL YEV KP+ Q + L+ L L+
Sbjct: 241 MGLTATASATIVADIQKMLSIEDCVVLRAPLDRPNLRYEVCSKPSGQAEVLETLVGLLLG 300
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
RFR QSGI+Y SIK+ ++ L G+R Y+A ++
Sbjct: 301 RFRGQSGIVYCFSIKDTHEVASGLCQHGIRADCYNANMDHKDRSDVHFRWSHNEIDVVVA 360
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 361 TVAFGMGIDKPDVRFVIHHTMSKSVENYYQESGRAG 396
>gi|148226526|ref|NP_001089858.1| RecQ protein-like (DNA helicase Q1-like) [Xenopus laevis]
gi|80476410|gb|AAI08556.1| MGC131022 protein [Xenopus laevis]
Length = 652
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 143/335 (42%), Positives = 204/335 (60%), Gaps = 25/335 (7%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++ WS ++R L F L FR QL IN + +D +IMPT S ++ ++
Sbjct: 74 DFLWSQKIRRALSDSFQLQTFRSLQLETINATMSGRDVFLIMPTGGGKSLCYQLPALCSD 133
Query: 62 KFNLT-----DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSP 116
F L +QL +N + ++ + + +K +M + S LKLLYV+P
Sbjct: 134 GFTLVICPLISLMEDQLMVLNRLGVSATSLNASSSKEHVKWVHGEMMNKKSQLKLLYVTP 193
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+ G LAR+A+DEVHCCS WGHDFRPDY+ L ILK FP+ P++
Sbjct: 194 EKVAKSKVFMSRLEKAYQGGLLARVAVDEVHCCSQWGHDFRPDYKTLGILKRQFPNSPLI 253
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT+ V+ D QK+L ++ + A FNRPNLFYEVR+KP++ +D + ++ L++ R
Sbjct: 254 GLTATATSHVLKDAQKILCVQKPLTFTASFNRPNLFYEVRLKPSSSEDFIADITKLINSR 313
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+ G+R AYHA +E +
Sbjct: 314 YKGQSGIIYCFSQKDSEQVTMSLQKLGIRAGAYHANMEPRDKSKVHTKWTANEIQIVVAT 373
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 374 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 408
>gi|91075962|ref|XP_969092.1| PREDICTED: similar to MGC131022 protein [Tribolium castaneum]
gi|270014620|gb|EFA11068.1| hypothetical protein TcasGA2_TC004664 [Tribolium castaneum]
Length = 608
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 146/334 (43%), Positives = 196/334 (58%), Gaps = 69/334 (20%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--------------- 93
+PWS +++S+LK KF FR QLAAIN L KKD +++MPTG
Sbjct: 70 FPWSAQLKSLLKEKFKFDHFRAKQLAAINATLSKKDVLLVMPTGGGKSLVFQLPALIDPG 129
Query: 94 -----------------LLKKKKI-------------------CLMTESSSLKLLYVSPE 117
L+K KI + ++ S+LKLLYV+PE
Sbjct: 130 FTLVVTPLVSLIQDQLVALEKFKIEAATIHASTSKSEIKEIYDSMTSKKSALKLLYVTPE 189
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
+A+SK FM+ L+K Y+A +AR+AIDEVHCCS+WGHDFRPDY YL +++++ VP LG
Sbjct: 190 WIARSKKFMSVLKKCYEAKRVARVAIDEVHCCSTWGHDFRPDYPYLGLVRSLLEKVPFLG 249
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT V+ DVQ ML +E+C++I APFNRPNLFY+V KPA + L+ L LM+ ++
Sbjct: 250 LTATATMSVLNDVQTMLNLENCLIITAPFNRPNLFYQVLPKPATKDGVLNYLEKLMTEKY 309
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSI 279
QSGIIYT +I EC L L+ LRV+ +HA+LE ++
Sbjct: 310 AGQSGIIYTNTINECISLATALKGSNLRVAPFHAQLEPEQKKKIHRKWLDNTYQAVVATV 369
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
AFG+GIDKP+VRFVIHH + +SME+ YQ S G
Sbjct: 370 AFGMGIDKPDVRFVIHHVIPRSMESLYQESGRAG 403
>gi|403269130|ref|XP_003926609.1| PREDICTED: ATP-dependent DNA helicase Q1 [Saimiri boliviensis
boliviensis]
Length = 649
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 142/335 (42%), Positives = 203/335 (60%), Gaps = 25/335 (7%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
+YPWS +V+ VL++ F L FRP QL IN+ + K+ ++MPT S ++ ++
Sbjct: 72 DYPWSGKVKDVLQNVFKLQKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCLD 131
Query: 62 KFNLT-----DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSP 116
F L +QL + + + + + +K ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L +E C A FNRPNL+YEVR KP +D ++++ L++ R
Sbjct: 252 GLTATATNHVLTDAQKILCVEKCFTFTASFNRPNLYYEVRQKPPNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+N G+ AYHA +E +
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANMEPEDKTKVHRKWSANEIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|390343347|ref|XP_786769.3| PREDICTED: ATP-dependent DNA helicase Q1 [Strongylocentrotus
purpuratus]
Length = 980
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 148/335 (44%), Positives = 205/335 (61%), Gaps = 25/335 (7%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
+YPWS ++RS+ ++ F + +RP Q +N +L +D I++MPT S ++ +++
Sbjct: 81 DYPWSAKLRSLCETVFGIKKYRPLQEKTMNASLSGRDVILLMPTGGGKSLCYQLPALVSK 140
Query: 62 KFNLT-----DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSP 116
F L +Q A+ + + + +K ++ S LKLLYV+P
Sbjct: 141 GFTLVVSPLLSLMEDQTMALEEIGVNATVLNSNTPPESVKDVHRQMIDARSELKLLYVTP 200
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM L+K YKA L RIAIDEVHCCS WGHDFRPDY+ L +LK F D PIL
Sbjct: 201 EKIAKSKRFMACLEKAYKANLLTRIAIDEVHCCSQWGHDFRPDYKILGLLKRQFTDTPIL 260
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ DV+ +L ++ C V +A FNRPNLFYEVR KP+ Q + ++EL L++
Sbjct: 261 GLTATATMDVLDDVKGILGLQGCQVFRAGFNRPNLFYEVRPKPSKQAEFVEELIKLINGE 320
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL-------------ESNV-----S 278
F+ QSGIIY S K+ E + E L+ G++ YHA L E+N+ +
Sbjct: 321 FKGQSGIIYCFSRKDTETMAENLKKGGIQAHPYHAMLDAQYRSQVHRNWKENNIQVVVAT 380
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 381 VAFGMGIDKPDVRFVIHHSISKSMENYYQESGRAG 415
>gi|170064539|ref|XP_001867566.1| ATP-dependent DNA helicase Q1 [Culex quinquefasciatus]
gi|167881896|gb|EDS45279.1| ATP-dependent DNA helicase Q1 [Culex quinquefasciatus]
Length = 701
Score = 277 bits (708), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 150/360 (41%), Positives = 203/360 (56%), Gaps = 73/360 (20%)
Query: 24 FRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKK 83
+R +L + L K+D + WS VR VL F + DFR QL AIN L K
Sbjct: 47 YRVRELQVKSSELAKQD---WNAEGHAWSGTVRQVLGEVFRMADFRSQQLPAINGILSKH 103
Query: 84 DAIIIMPTG------------------------------KLLKKKKICLMTE-------- 105
D I++ PTG ++ KK+ + E
Sbjct: 104 DVILLAPTGGGKSLCFQLPALVADGITVVVSPLISLMEDQVWALKKLGVKAEYLSANIDK 163
Query: 106 --------------SSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSS 151
+ LK++Y++PE++AKS FM+ LQK Y A LA+ AIDEVHCCS
Sbjct: 164 DVVNNVNKLLRDGDTEQLKIVYITPERMAKSNRFMSALQKCYNAKKLAQFAIDEVHCCSQ 223
Query: 152 WGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNL 211
WGHD+RPDY+ L++LK M+PDVPILG+TATAT KV+ DVQKML + +C++ APFNRPNL
Sbjct: 224 WGHDYRPDYKLLAVLKKMYPDVPILGVTATATAKVLNDVQKMLGLRECLIFNAPFNRPNL 283
Query: 212 FYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA 271
+Y V KP+ +++ D LA+LM R+RN SGIIYT ++KE E++ +L R ++V YHA
Sbjct: 284 YYHVLEKPSDKEELYDMLAELMKGRYRNMSGIIYTFTVKETEEISTQLLQRDVKVIPYHA 343
Query: 272 KLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L++ ++AFG+GIDK +VRFVIHH +SKSMENFYQ S G
Sbjct: 344 YLDAKQRSRTHQRWMSNEVQAVVATVAFGMGIDKADVRFVIHHTISKSMENFYQESGRAG 403
>gi|290490728|dbj|BAI79324.1| RecQ1 helicae [Gallus gallus]
Length = 607
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 140/336 (41%), Positives = 195/336 (58%), Gaps = 69/336 (20%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL--KKKKIC- 101
TD+PW +++++ L++KF L FR QL +N + KD ++MPT GK L + +C
Sbjct: 31 TDFPWYEKIKTALQNKFKLQKFRSLQLETVNATMAGKDIFLVMPTGGGKSLCYQLPAVCS 90
Query: 102 ----------------------------------------------LMTESSSLKLLYVS 115
++ SS LKLLYV+
Sbjct: 91 DGFTLVICPLISLMEDQLMVLDQLGISATLLNASSSKEHVKWVHAQMLDRSSQLKLLYVT 150
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PEK+AKSK FM+KL+K Y+AGCLARIA+DEVHCCS WGHDFRPDY+ L ILK FP P+
Sbjct: 151 PEKIAKSKMFMSKLEKAYQAGCLARIAVDEVHCCSQWGHDFRPDYKSLGILKRQFPCAPL 210
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+GLTATAT V+ D Q +L I+ C+ A FNRPNL+YEVR KP+ +D ++++ L++
Sbjct: 211 IGLTATATNHVLKDAQNILHIQKCITFTASFNRPNLYYEVRHKPSNNEDFIEDIVKLING 270
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
R++ SGI+Y S K+ E + L+ G++ YHA +++
Sbjct: 271 RYKGLSGIVYCFSQKDSEQVTVSLQKLGIKAGTYHANMDAKYKTKVHKGWAANQIQVVVA 330
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 331 TVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 366
>gi|332232887|ref|XP_003265634.1| PREDICTED: ATP-dependent DNA helicase Q1 [Nomascus leucogenys]
Length = 649
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 142/335 (42%), Positives = 193/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PWS +V+ VL++ F L FRP QL IN+ + K+ ++MPTG
Sbjct: 72 DFPWSGKVKDVLQNVFKLQKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L IE C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+N G+ AYHA LE +
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|402885395|ref|XP_003906142.1| PREDICTED: ATP-dependent DNA helicase Q1 [Papio anubis]
Length = 649
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 142/335 (42%), Positives = 192/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PWS +V+ VL++ F L FRP QL IN+ + K+ ++MPTG
Sbjct: 72 DFPWSGKVKDVLQNVFKLQKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPKASLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L +E C A FNRPNLFYEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATNHVLTDAQKILCVEKCFTFTASFNRPNLFYEVRQKPSNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+N G+ AYHA LE +
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTAVHRKWSANEIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|45383374|ref|NP_989724.1| ATP-dependent DNA helicase Q1 [Gallus gallus]
gi|23503565|dbj|BAC20377.1| RECQL1 protein [Gallus gallus]
Length = 661
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 139/336 (41%), Positives = 195/336 (58%), Gaps = 69/336 (20%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL--KKKKIC- 101
TD+PW +++++ L++KF L FR QL +N + KD ++MPT GK L + +C
Sbjct: 71 TDFPWYEKIKTALQNKFKLQKFRSLQLETVNATMAGKDIFLVMPTGGGKSLCYQLPAVCS 130
Query: 102 ----------------------------------------------LMTESSSLKLLYVS 115
++ +S LKLLYV+
Sbjct: 131 DGFTLVICPLISLMEDQLMVLDQLGISATLLNASSSKEHVKWVHAQMLDRNSQLKLLYVT 190
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PEK+AKSK FM+KL+K Y+AGCLARIA+DEVHCCS WGHDFRPDY+ L ILK FP P+
Sbjct: 191 PEKIAKSKMFMSKLEKAYQAGCLARIAVDEVHCCSQWGHDFRPDYKSLGILKRQFPCAPL 250
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+GLTATAT V+ D Q +L I+ C+ A FNRPNL+YEVR KP+ +D ++++ L++
Sbjct: 251 IGLTATATNHVLKDAQNILHIQKCITFTASFNRPNLYYEVRHKPSNNEDFIEDIVKLING 310
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
R++ SGI+Y S K+ E + L+ G++ YHA +++
Sbjct: 311 RYKGLSGIVYCFSQKDSEQVTVSLQKLGIKAGTYHANMDAKYKTKVHKGWAANQIQVVVA 370
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 371 TVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|149049048|gb|EDM01502.1| rCG29929, isoform CRA_b [Rattus norvegicus]
Length = 645
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 142/335 (42%), Positives = 196/335 (58%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL---------- 95
D+PWS +V+ VL+ F L FRP QL +N + +KD ++MPT GK L
Sbjct: 72 DFPWSGKVKHVLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSD 131
Query: 96 -----------------------------------KKKKICLMTE----SSSLKLLYVSP 116
K+ C+ TE +S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+AG L +A+DEVHCCS WGHDFRPDY+ L ILK FP++ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNISLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L +E C+ A FNRPNL+YEVR KP++ +D ++ +A+L++ R
Sbjct: 252 GLTATATNHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENIANLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ +SGIIY S K+ E + L+ G+R YHA +E +
Sbjct: 312 YKGKSGIIYCFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|12654453|gb|AAH01052.1| RecQ protein-like (DNA helicase Q1-like) [Homo sapiens]
gi|30583077|gb|AAP35783.1| RecQ protein-like (DNA helicase Q1-like) [Homo sapiens]
gi|61359045|gb|AAX41660.1| RecQ protein-like [synthetic construct]
Length = 649
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 141/335 (42%), Positives = 193/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PWS +V+ +L++ F L FRP QL IN+ + K+ ++MPTG
Sbjct: 72 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L IE C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+N G+ AYHA LE +
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|14591902|ref|NP_116559.1| ATP-dependent DNA helicase Q1 [Homo sapiens]
gi|14591904|ref|NP_002898.2| ATP-dependent DNA helicase Q1 [Homo sapiens]
gi|218512113|sp|P46063.3|RECQ1_HUMAN RecName: Full=ATP-dependent DNA helicase Q1; AltName: Full=DNA
helicase, RecQ-like type 1; Short=RecQ1; AltName:
Full=DNA-dependent ATPase Q1; AltName: Full=RecQ
protein-like 1
gi|119616840|gb|EAW96434.1| RecQ protein-like (DNA helicase Q1-like), isoform CRA_a [Homo
sapiens]
gi|119616841|gb|EAW96435.1| RecQ protein-like (DNA helicase Q1-like), isoform CRA_a [Homo
sapiens]
gi|119616842|gb|EAW96436.1| RecQ protein-like (DNA helicase Q1-like), isoform CRA_a [Homo
sapiens]
gi|119616843|gb|EAW96437.1| RecQ protein-like (DNA helicase Q1-like), isoform CRA_a [Homo
sapiens]
gi|119616844|gb|EAW96438.1| RecQ protein-like (DNA helicase Q1-like), isoform CRA_a [Homo
sapiens]
gi|158256686|dbj|BAF84316.1| unnamed protein product [Homo sapiens]
gi|261858616|dbj|BAI45830.1| RecQ protein-like [synthetic construct]
Length = 649
Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 141/335 (42%), Positives = 193/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PWS +V+ +L++ F L FRP QL IN+ + K+ ++MPTG
Sbjct: 72 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L IE C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+N G+ AYHA LE +
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|531243|dbj|BAA07200.1| DNA helicase Q1 [Homo sapiens]
Length = 649
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 141/335 (42%), Positives = 193/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PWS +V+ +L++ F L FRP QL IN+ + K+ ++MPTG
Sbjct: 72 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L IE C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+N G+ AYHA LE +
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|332839802|ref|XP_520788.3| PREDICTED: ATP-dependent DNA helicase Q1 [Pan troglodytes]
gi|410267548|gb|JAA21740.1| RecQ protein-like (DNA helicase Q1-like) [Pan troglodytes]
gi|410267556|gb|JAA21744.1| RecQ protein-like (DNA helicase Q1-like) [Pan troglodytes]
gi|410267560|gb|JAA21746.1| RecQ protein-like (DNA helicase Q1-like) [Pan troglodytes]
gi|410304460|gb|JAA30830.1| RecQ protein-like (DNA helicase Q1-like) [Pan troglodytes]
gi|410304462|gb|JAA30831.1| RecQ protein-like (DNA helicase Q1-like) [Pan troglodytes]
gi|410352515|gb|JAA42861.1| RecQ protein-like (DNA helicase Q1-like) [Pan troglodytes]
gi|410352521|gb|JAA42864.1| RecQ protein-like (DNA helicase Q1-like) [Pan troglodytes]
gi|410352523|gb|JAA42865.1| RecQ protein-like (DNA helicase Q1-like) [Pan troglodytes]
gi|410352525|gb|JAA42866.1| RecQ protein-like (DNA helicase Q1-like) [Pan troglodytes]
gi|410352527|gb|JAA42867.1| RecQ protein-like (DNA helicase Q1-like) [Pan troglodytes]
Length = 649
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 141/335 (42%), Positives = 193/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PWS +V+ +L++ F L FRP QL IN+ + K+ ++MPTG
Sbjct: 72 DFPWSGKVKDILQNVFKLQKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L IE C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+N G+ AYHA LE +
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|30584589|gb|AAP36547.1| Homo sapiens RecQ protein-like (DNA helicase Q1-like) [synthetic
construct]
gi|61369219|gb|AAX43302.1| RecQ protein-like [synthetic construct]
Length = 650
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 141/335 (42%), Positives = 193/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PWS +V+ +L++ F L FRP QL IN+ + K+ ++MPTG
Sbjct: 72 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L IE C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+N G+ AYHA LE +
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|427789035|gb|JAA59969.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 640
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 149/336 (44%), Positives = 201/336 (59%), Gaps = 69/336 (20%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG-------------- 92
+++PWS+RV L++ F++T FR QL AIN+ L KD I+IMPTG
Sbjct: 61 SNFPWSNRVNETLENVFHMTSFRSMQLPAINVTLSNKDCILIMPTGGGKSLCYQLPALIS 120
Query: 93 -----------KLLKKKKICLMTES--------------------------SSLKLLYVS 115
L++ + + L S SLKLLYV+
Sbjct: 121 KGVTVVVSPLLSLMEDQVMALQAMSYPVAMLAANVSVKDTNQILKAMADGEDSLKLLYVT 180
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PEK+AKSK FM+ L+K Y+ AR+AIDEVHCCS WGHDFRPDY+YL+I+K FP+VPI
Sbjct: 181 PEKMAKSKRFMSMLEKAYQRKHFARLAIDEVHCCSQWGHDFRPDYKYLAIMKRQFPEVPI 240
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
LG+TATA+ ++ DVQKML IE VV++AP +RPNL YEV KP+A + + +A ++
Sbjct: 241 LGVTATASAAIIADVQKMLDIESAVVLRAPLDRPNLVYEVLAKPSANDEAVKMIARIILG 300
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
RF+NQ GI+Y SIKE ++L +EL+ G+ V +YHA +E +
Sbjct: 301 RFKNQCGIVYCFSIKETDELADELKGYGIAVDSYHASMEPHRRSSVHTRWMHGKILVIVA 360
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDK NVRFVIHH +SKS+EN+YQ S G
Sbjct: 361 TIAFGMGIDKSNVRFVIHHTMSKSVENYYQESGRAG 396
>gi|619863|gb|AAA60261.1| DNA helicase [Homo sapiens]
Length = 659
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 141/335 (42%), Positives = 193/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PWS +V+ +L++ F L FRP QL IN+ + K+ ++MPTG
Sbjct: 72 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHDEMVNKNSELKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L IE C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+N G+ AYHA LE +
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|397517493|ref|XP_003828945.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q1 [Pan
paniscus]
Length = 649
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 140/335 (41%), Positives = 193/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PWS +V+ +L++ F L FRP QL IN+ + K+ ++MPTG
Sbjct: 72 DFPWSGKVKDILQNVFKLQKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L +E C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATNHVLTDAQKILCVEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+N G+ AYHA LE +
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|224095634|ref|XP_002200254.1| PREDICTED: ATP-dependent DNA helicase Q1 [Taeniopygia guttata]
Length = 661
Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 194/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL--KKKKIC-- 101
D+PW +++++ L+S+F L FR QL +N A+ KD ++MPT GK L + +C
Sbjct: 72 DFPWYEKIKAALQSRFKLQKFRSLQLETVNAAMAGKDIFLVMPTGGGKSLCYQLPAVCSD 131
Query: 102 ---------------------------------------------LMTESSSLKLLYVSP 116
++ +S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLEQLGISAALLNASSSKEHVKWVHTEMLKRNSQLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM+KL+K Y+AGCLARIA+DEVHCCS WGHDFRPDY+ L ILK FP+ P++
Sbjct: 192 EKIAKSKMFMSKLEKAYQAGCLARIAVDEVHCCSQWGHDFRPDYKSLGILKRQFPNTPLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D Q +L + C+ A FNRPNL+YEVR KP+ +D ++++ ++ R
Sbjct: 252 GLTATATNHVLKDAQNILHVHKCITFTASFNRPNLYYEVRHKPSNNEDFIEDIVKTINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ SGI+Y S K+ E + L+ G++ YHA +++ +
Sbjct: 312 YKGMSGIVYCFSQKDSEQVTVSLQKLGIKAGTYHANMDAKYKTKVHKGWATNQIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|58865766|ref|NP_001012098.1| ATP-dependent DNA helicase Q1 [Rattus norvegicus]
gi|81910891|sp|Q6AYJ1.1|RECQ1_RAT RecName: Full=ATP-dependent DNA helicase Q1; AltName:
Full=DNA-dependent ATPase Q1; AltName: Full=RecQ
protein-like 1
gi|50925619|gb|AAH79026.1| RecQ protein-like (DNA helicase Q1-like) [Rattus norvegicus]
gi|149049049|gb|EDM01503.1| rCG29929, isoform CRA_c [Rattus norvegicus]
Length = 621
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 142/335 (42%), Positives = 196/335 (58%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL---------- 95
D+PWS +V+ VL+ F L FRP QL +N + +KD ++MPT GK L
Sbjct: 72 DFPWSGKVKHVLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSD 131
Query: 96 -----------------------------------KKKKICLMTE----SSSLKLLYVSP 116
K+ C+ TE +S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+AG L +A+DEVHCCS WGHDFRPDY+ L ILK FP++ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNISLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L +E C+ A FNRPNL+YEVR KP++ +D ++ +A+L++ R
Sbjct: 252 GLTATATNHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENIANLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ +SGIIY S K+ E + L+ G+R YHA +E +
Sbjct: 312 YKGKSGIIYCFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|151568124|pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
gi|151568125|pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
gi|282403581|pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
gi|282403582|pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 141/335 (42%), Positives = 193/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PWS +V+ +L++ F L FRP QL IN+ + K+ ++MPTG
Sbjct: 25 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD 84
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 85 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 145 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI 204
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L IE C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 205 GLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 264
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+N G+ AYHA LE +
Sbjct: 265 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 324
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 325 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 359
>gi|326912433|ref|XP_003202555.1| PREDICTED: ATP-dependent DNA helicase Q1-like [Meleagris gallopavo]
Length = 661
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 137/336 (40%), Positives = 195/336 (58%), Gaps = 69/336 (20%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL--KKKKIC- 101
TD+PW +++++ L++KF L FR QL +N + KD ++MPT GK L + +C
Sbjct: 71 TDFPWYEKIKTALQNKFKLQKFRSLQLETVNATMAGKDIFLVMPTGGGKSLCYQLPAVCS 130
Query: 102 ----------------------------------------------LMTESSSLKLLYVS 115
++ +S LKLLYV+
Sbjct: 131 DGFTLVICPLISLMEDQLMVLEQLGISATLLNASSSKEHVKWVHTQMLDRNSQLKLLYVT 190
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PEK+AKSK FM+KL+K Y+AGCLARIA+DEVHCCS WGHDFRPDY+ L ILK FP P+
Sbjct: 191 PEKIAKSKMFMSKLEKAYQAGCLARIAVDEVHCCSQWGHDFRPDYKSLGILKRQFPLAPL 250
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+GLTATAT V+ D Q +L ++ C+ A FNRPNL+YEVR KP+ +D ++++ +++
Sbjct: 251 IGLTATATNHVLKDAQNILHVQKCITFTASFNRPNLYYEVRHKPSNNEDFIEDIVKIING 310
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
R++ SGI+Y S K+ E + L+ G++ YHA +++
Sbjct: 311 RYKGLSGIVYCFSQKDSEQVTISLQKLGIKAGTYHANMDAKYKTKVHKGWAANQIQVVVA 370
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 371 TVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|327291741|ref|XP_003230579.1| PREDICTED: ATP-dependent DNA helicase Q1-like, partial [Anolis
carolinensis]
Length = 451
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 138/335 (41%), Positives = 194/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PWS +VR VL++ F L FRP QL IN+ + +D ++MPTG
Sbjct: 72 DFPWSKKVREVLRNSFKLPKFRPLQLETINVTMAGRDVFLVMPTGGGKSLCYQLPAVCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+L++ K+ +++ SS LKL+YV+P
Sbjct: 132 GFTLVICPLVSLMEDQLMVLEQLKVSATLLNASSSKEHVKWVYTEMLSSSSQLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK F++KL+K Y+AG L IA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFVSKLEKAYQAGRLTHIAVDEVHCCSQWGHDFRPDYKLLGILKRQFPNASLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT+ V+ D QK+L I+ C+ A FNRPNL+YEVR K ++ ++++ L++RR
Sbjct: 252 GLTATATSHVLHDAQKILCIQKCITFTASFNRPNLYYEVRQKSPVAQNFIEDIVKLINRR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ SGIIY S K+ E + L+ G++ YHA +E +
Sbjct: 312 YKGLSGIIYCFSQKDAEQVTMSLQQLGIKAGTYHANMEPKDKSRVHKRWSANEIQIVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|354482050|ref|XP_003503213.1| PREDICTED: ATP-dependent DNA helicase Q1 [Cricetulus griseus]
gi|344244467|gb|EGW00571.1| ATP-dependent DNA helicase Q1 [Cricetulus griseus]
Length = 648
Score = 273 bits (699), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 194/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PWS +V+ VL++ L FRP QL +N+ + +KD ++MPTG
Sbjct: 72 DFPWSGKVKDVLQNVLKLQKFRPLQLETVNVTMARKDIFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLVYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+AG L RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEAGRLTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNTSLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L +E C+ A FNRPNL+YEVR KP +D ++++ L++ R
Sbjct: 252 GLTATATNHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPPNAEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ +SGIIY S K+ E + L+ G+R YHA +E +
Sbjct: 312 YKGRSGIIYCFSQKDSEQVTISLQKLGIRAGTYHANMEPEDKTRVHTQWSANELQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|157115597|ref|XP_001652627.1| DNA helicase recq1 [Aedes aegypti]
gi|108876847|gb|EAT41072.1| AAEL007256-PA [Aedes aegypti]
Length = 750
Score = 273 bits (698), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 146/336 (43%), Positives = 206/336 (61%), Gaps = 27/336 (8%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
+ WS VR VLK F++ DFR QLA IN L K++ +++ PT S ++ +V+
Sbjct: 79 FGWSKEVRRVLKEVFHMADFRAQQLATINALLAKQNVLLLAPTGGGKSLCYQLPAVVSKG 138
Query: 63 FNLT-----DFRPNQLAAINIALLKKDAIIIMPTGKLLKK-KKICLMTESSSLKLLYVSP 116
L +Q+ A+ ++ + + +L+ K + +LK+L+V+P
Sbjct: 139 ITLVVSPLISLMEDQVWALKKRGIRAEYLCGTSEKELVSAVHKYLRDGDDGNLKILFVTP 198
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
E++ +S F T LQK Y LA+IAIDEVHCCS WGHDFR DY+ L I KT+FPDVPIL
Sbjct: 199 ERINRSARFKTALQKCYNIKKLAQIAIDEVHCCSQWGHDFRTDYKELGIFKTLFPDVPIL 258
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
G+TATATTKV+ DVQKMLQ+ +C+ + APFNRPNL+Y V KP +++ D LADL+ RR
Sbjct: 259 GVTATATTKVISDVQKMLQLSECLTLNAPFNRPNLYYHVLEKPNDKEELYDLLADLLKRR 318
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK--------------LESNV----- 277
+ SGIIYT ++KE ++ EL R ++V YH + +++ +
Sbjct: 319 YHGMSGIIYTFTVKETAEISTELLQREVKVLPYHGQNMDPKQRSRTHQKWIDNEIQAVVA 378
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+ AFG+GIDKP+VRFVIHH +SK+MENFYQ S G
Sbjct: 379 TTAFGMGIDKPDVRFVIHHTMSKTMENFYQESGRAG 414
>gi|357627945|gb|EHJ77457.1| putative RecQ Helicase [Danaus plexippus]
Length = 527
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 129/230 (56%), Positives = 166/230 (72%), Gaps = 18/230 (7%)
Query: 102 LMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQ 161
L +++ +KLLYV+PE+LAKSK FM+ LQK + G L RIAIDEVHCCS WGHDFRPDY+
Sbjct: 65 LKDKNTEVKLLYVTPERLAKSKRFMSALQKCHAEGRLQRIAIDEVHCCSQWGHDFRPDYK 124
Query: 162 YLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAA 221
YL IL MFP VPILGLTATAT+ V+ DVQK+L I C+VIK+ FNRPNL+Y++ KP +
Sbjct: 125 YLGILSNMFPGVPILGLTATATSHVLNDVQKILNITGCLVIKSTFNRPNLYYKILEKPTS 184
Query: 222 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---- 277
Q+DCL L L+ R+R +SGIIYT SIK+ E++ E L+ R L+++ YHA L + +
Sbjct: 185 QEDCLTILEKLLKYRYRGESGIIYTNSIKDSEEIAEGLKKRNLKIACYHANLSAEIRSKV 244
Query: 278 --------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 245 HIRWHEKSLQAIVATVAFGMGIDKPDVRFVIHHTISKSMENYYQESGRAG 294
>gi|355564072|gb|EHH20572.1| ATP-dependent DNA helicase Q1, partial [Macaca mulatta]
gi|355785959|gb|EHH66142.1| ATP-dependent DNA helicase Q1, partial [Macaca fascicularis]
Length = 647
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 140/335 (41%), Positives = 192/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PWS +V+ VL++ F L FRP QL IN+ + K+ ++MPTG
Sbjct: 70 DFPWSGKVKDVLQNVFKLQKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD 129
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 130 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 189
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 190 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI 249
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L +E C A FNR NL+YEVR KP+ +D ++++ L++ R
Sbjct: 250 GLTATATNHVLTDAQKILCVEKCFTFTASFNRSNLYYEVRQKPSNTEDFIEDIVKLINGR 309
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+N G+ AYHA LE +
Sbjct: 310 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 369
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 370 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 404
>gi|380798559|gb|AFE71155.1| ATP-dependent DNA helicase Q1, partial [Macaca mulatta]
Length = 645
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 140/335 (41%), Positives = 192/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PWS +V+ VL++ F L FRP QL IN+ + K+ ++MPTG
Sbjct: 68 DFPWSGKVKDVLQNVFKLQKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD 127
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 128 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 187
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 188 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI 247
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L +E C A FNR NL+YEVR KP+ +D ++++ L++ R
Sbjct: 248 GLTATATNHVLTDAQKILCVEKCFTFTASFNRSNLYYEVRQKPSNTEDFIEDIVKLINGR 307
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+N G+ AYHA LE +
Sbjct: 308 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTAVHRKWSANEIQVVVAT 367
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 368 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 402
>gi|383420495|gb|AFH33461.1| ATP-dependent DNA helicase Q1 [Macaca mulatta]
Length = 649
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 140/335 (41%), Positives = 192/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PWS +V+ VL++ F L FRP QL IN+ + K+ ++MPTG
Sbjct: 72 DFPWSGKVKDVLQNVFKLQKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L +E C A FNR NL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATNHVLTDAQKILCVEKCFTFTASFNRSNLYYEVRQKPSNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+N G+ AYHA LE +
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTAVHRKWSANEIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|297261947|ref|XP_002798535.1| PREDICTED: ATP-dependent DNA helicase Q1 isoform 2 [Macaca mulatta]
gi|297261949|ref|XP_001094207.2| PREDICTED: ATP-dependent DNA helicase Q1 isoform 1 [Macaca mulatta]
Length = 649
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 140/335 (41%), Positives = 192/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PWS +V+ VL++ F L FRP QL IN+ + K+ ++MPTG
Sbjct: 72 DFPWSGKVKDVLQNVFKLQKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L +E C A FNR NL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATNHVLTDAQKILCVEKCFTFTASFNRSNLYYEVRQKPSNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+N G+ AYHA LE +
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|15928520|gb|AAH14735.1| RecQ protein-like [Mus musculus]
Length = 648
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 193/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PW +V+ VL++ F L FRP QL IN+ + +KD ++MPTG
Sbjct: 72 DFPWFGKVKDVLQNVFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+AG L +A+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLM 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ DVQK+L + C+ A FNRPNLFYEVR KP++ +D +++ L++ R
Sbjct: 252 GLTATATNHVLKDVQKILCVGKCLTFTASFNRPNLFYEVRQKPSSAEDFTEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+ G+ YHA +E +
Sbjct: 312 YKGQSGIIYCFSQKDSEQITISLQKLGIHAGTYHANMEPEDKTKVHTQWSANELQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|4579744|dbj|BAA75085.1| DNA helicase Q1 [Mus musculus]
Length = 648
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 193/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PW +V+ VL++ F L FRP QL IN+ + +KD ++MPTG
Sbjct: 72 DFPWFGKVKDVLQNVFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+AG L +A+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLM 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ DVQK+L + C+ A FNRPNLFYEVR KP++ +D +++ L++ R
Sbjct: 252 GLTATATNHVLKDVQKILCVGKCLTFTASFNRPNLFYEVRQKPSSAEDFTEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+ G+ YHA +E +
Sbjct: 312 YKGQSGIIYCFSQKDSEQITISLQKLGIHAGTYHANMEPEDKTKVHTQWSANELQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|4579746|dbj|BAA75086.1| DNA helicase Q1 [Mus musculus]
Length = 631
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 193/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PW +V+ VL++ F L FRP QL IN+ + +KD ++MPTG
Sbjct: 72 DFPWFGKVKDVLQNVFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+AG L +A+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLM 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ DVQK+L + C+ A FNRPNLFYEVR KP++ +D +++ L++ R
Sbjct: 252 GLTATATNHVLKDVQKILCVGKCLTFTASFNRPNLFYEVRQKPSSAEDFTEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+ G+ YHA +E +
Sbjct: 312 YKGQSGIIYCFSQKDSEQITISLQKLGIHAGTYHANMEPEDKTKVHTQWSANELQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|74203917|dbj|BAE28550.1| unnamed protein product [Mus musculus]
Length = 634
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 193/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PW +V+ VL++ F L FRP QL IN+ + +KD ++MPTG
Sbjct: 72 DFPWFGKVKDVLQNVFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+AG L +A+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLM 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ DVQK+L + C+ A FNRPNLFYEVR KP++ +D +++ L++ R
Sbjct: 252 GLTATATNHVLKDVQKILCVGKCLTFTASFNRPNLFYEVRQKPSSAEDFTEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+ G+ YHA +E +
Sbjct: 312 YKGQSGIIYCFSQKDSEQITISLQKLGIHAGTYHANMEPEDKTKVHTQWSANELQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|449274903|gb|EMC83940.1| ATP-dependent DNA helicase Q1, partial [Columba livia]
Length = 656
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 194/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL--KKKKIC-- 101
D+PW +++++ L+ KF L FR QL +N A+ KD ++MPT GK L + +C
Sbjct: 67 DFPWYEKIKTALQGKFKLQKFRSLQLETVNAAMAGKDIFLVMPTGGGKSLCYQLPAVCSD 126
Query: 102 ---------------------------------------------LMTESSSLKLLYVSP 116
++ +S LKL+YV+P
Sbjct: 127 GFTLVICPLISLMEDQLMVLEQLGISAALLNASSSKEHVKWVHTEMLNRNSQLKLVYVTP 186
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM+KL+K Y+AG LARIA+DEVHCCS WGHDFRPDY+ L ILK FP+ P++
Sbjct: 187 EKIAKSKMFMSKLEKAYQAGRLARIAVDEVHCCSQWGHDFRPDYKSLGILKRQFPNAPLI 246
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L ++ C+ A FNRPNL+YEVR KP+ +D ++++ ++ R
Sbjct: 247 GLTATATNHVLKDAQKILHVQKCITFTASFNRPNLYYEVRHKPSNNEDFIEDIVKTINGR 306
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ SGI+Y S K+ E + L+ G++ YHA +++ +
Sbjct: 307 YKGLSGIVYCFSQKDSEQVTVSLQKLGIKAGTYHANMDAKYKTKVHKGWAANQIQVVVAT 366
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 367 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 401
>gi|334348257|ref|XP_001365384.2| PREDICTED: ATP-dependent DNA helicase Q1 [Monodelphis domestica]
Length = 655
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 194/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL--KKKKIC-- 101
D+PWS++V+ +++ F L FRP QL IN+ + K+ ++MPT GK L + +C
Sbjct: 72 DFPWSEKVKDAMQNVFKLQKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPAVCSD 131
Query: 102 ---------------------------------------------LMTESSSLKLLYVSP 116
++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLEQLGVSATLLNASSTKEHVKWVHAEMVNKNSKLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+AG RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEAGRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNTSLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L IE C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATNHVLKDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDVVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+ G++ AYHA +E +
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTISLQKLGIQAGAYHANMEPKDKTKVHKNWSANKIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|426371952|ref|XP_004052901.1| PREDICTED: ATP-dependent DNA helicase Q1 [Gorilla gorilla gorilla]
Length = 649
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 140/335 (41%), Positives = 192/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PWS +V+ +L++ F L FR QL IN+ + K+ ++MPTG
Sbjct: 72 DFPWSGKVKDILQNVFKLEKFRLLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L IE C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+N G+ AYHA LE +
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|148678690|gb|EDL10637.1| RecQ protein-like, isoform CRA_a [Mus musculus]
Length = 645
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 192/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PW +V+ VL++ F L FRP QL IN+ + +KD ++MPTG
Sbjct: 72 DFPWFGKVKDVLQNVFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+AG L A+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEAGRLTGAAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLM 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ DVQK+L + C+ A FNRPNLFYEVR KP++ +D +++ L++ R
Sbjct: 252 GLTATATNHVLKDVQKILCVGKCLTFTASFNRPNLFYEVRQKPSSAEDFTEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+ G+ YHA +E +
Sbjct: 312 YKGQSGIIYCFSQKDSEQITISLQKLGIHAGTYHANMEPEDKTKVHTQWSANELQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|431908388|gb|ELK11985.1| ATP-dependent DNA helicase Q1 [Pteropus alecto]
Length = 1213
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 142/335 (42%), Positives = 194/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PWSD+V+ VL++ F L FR QL IN+ + KD ++MPTG
Sbjct: 638 DFPWSDKVKDVLQNVFKLEMFRLLQLETINVTMSGKDIFLVMPTGGGKSLCYQLPALCSD 697
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ +I ++ ++S LKL+YV+P
Sbjct: 698 GFTLVICPLISLMEDQLMVLKQLEISATMLNASSSKEHVKWVHAEMVNKNSKLKLIYVTP 757
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A L RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 758 EKIAKSKMFMSRLEKAYEAKRLTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNTALI 817
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L IE C+ A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 818 GLTATATNHVLKDAQKILCIEKCLTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 877
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
+ QSGIIY S K+ E + L+ G+ AYHA +E +
Sbjct: 878 YNGQSGIIYCFSQKDSEQVTVSLQKLGIHAGAYHANMEPEDKTKVHRRWSANEIQVVVAT 937
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 938 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 972
>gi|148678692|gb|EDL10639.1| RecQ protein-like, isoform CRA_c [Mus musculus]
Length = 662
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 192/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PW +V+ VL++ F L FRP QL IN+ + +KD ++MPTG
Sbjct: 86 DFPWFGKVKDVLQNVFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSD 145
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 146 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLIYVTP 205
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+AG L A+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 206 EKIAKSKMFMSRLEKAYEAGRLTGAAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLM 265
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ DVQK+L + C+ A FNRPNLFYEVR KP++ +D +++ L++ R
Sbjct: 266 GLTATATNHVLKDVQKILCVGKCLTFTASFNRPNLFYEVRQKPSSAEDFTEDIVKLINGR 325
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+ G+ YHA +E +
Sbjct: 326 YKGQSGIIYCFSQKDSEQITISLQKLGIHAGTYHANMEPEDKTKVHTQWSANELQVVVAT 385
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 386 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 420
>gi|326368226|ref|NP_001191836.1| ATP-dependent DNA helicase Q1 isoform 3 [Mus musculus]
gi|74209854|dbj|BAE23625.1| unnamed protein product [Mus musculus]
gi|148678693|gb|EDL10640.1| RecQ protein-like, isoform CRA_d [Mus musculus]
Length = 631
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 192/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PW +V+ VL++ F L FRP QL IN+ + +KD ++MPTG
Sbjct: 72 DFPWFGKVKDVLQNVFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+AG L A+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEAGRLTGAAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLM 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ DVQK+L + C+ A FNRPNLFYEVR KP++ +D +++ L++ R
Sbjct: 252 GLTATATNHVLKDVQKILCVGKCLTFTASFNRPNLFYEVRQKPSSAEDFTEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+ G+ YHA +E +
Sbjct: 312 YKGQSGIIYCFSQKDSEQITISLQKLGIHAGTYHANMEPEDKTKVHTQWSANELQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|110625690|ref|NP_075529.2| ATP-dependent DNA helicase Q1 isoform 1 [Mus musculus]
gi|341941960|sp|Q9Z129.2|RECQ1_MOUSE RecName: Full=ATP-dependent DNA helicase Q1; AltName:
Full=DNA-dependent ATPase Q1; AltName: Full=RecQ
protein-like 1
gi|74215762|dbj|BAE23422.1| unnamed protein product [Mus musculus]
gi|74216639|dbj|BAE37751.1| unnamed protein product [Mus musculus]
gi|148678691|gb|EDL10638.1| RecQ protein-like, isoform CRA_b [Mus musculus]
Length = 648
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 192/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PW +V+ VL++ F L FRP QL IN+ + +KD ++MPTG
Sbjct: 72 DFPWFGKVKDVLQNVFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+AG L A+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEAGRLTGAAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLM 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ DVQK+L + C+ A FNRPNLFYEVR KP++ +D +++ L++ R
Sbjct: 252 GLTATATNHVLKDVQKILCVGKCLTFTASFNRPNLFYEVRQKPSSAEDFTEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+ G+ YHA +E +
Sbjct: 312 YKGQSGIIYCFSQKDSEQITISLQKLGIHAGTYHANMEPEDKTKVHTQWSANELQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|326368214|ref|NP_001191835.1| ATP-dependent DNA helicase Q1 isoform 2 [Mus musculus]
Length = 634
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 192/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PW +V+ VL++ F L FRP QL IN+ + +KD ++MPTG
Sbjct: 72 DFPWFGKVKDVLQNVFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+AG L A+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEAGRLTGAAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLM 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ DVQK+L + C+ A FNRPNLFYEVR KP++ +D +++ L++ R
Sbjct: 252 GLTATATNHVLKDVQKILCVGKCLTFTASFNRPNLFYEVRQKPSSAEDFTEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+ G+ YHA +E +
Sbjct: 312 YKGQSGIIYCFSQKDSEQITISLQKLGIHAGTYHANMEPEDKTKVHTQWSANELQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|324516572|gb|ADY46570.1| ATP-dependent DNA helicase Q1, partial [Ascaris suum]
Length = 430
Score = 270 bits (689), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 148/334 (44%), Positives = 192/334 (57%), Gaps = 69/334 (20%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---------------- 92
+PWS + VL+ F L DFRP Q + IN L K+D +IIM TG
Sbjct: 65 FPWSTQCYDVLRKVFRLADFRPLQRSTINSILSKEDTLIIMSTGGGKSLCYQLPAVLLSG 124
Query: 93 --------------KLLKKKKI---------------------CLMTESSSLKLLYVSPE 117
+LL+ K+ L +SS +LLYV+PE
Sbjct: 125 ITLVVSPLVSLIEDQLLQLAKLGIEAATLNQSTSKDEAARIQKALTDPNSSFRLLYVTPE 184
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
KLAKSK M +L+K + G L +AIDEVHCCS WGHDFRPD+++L++LK F VPILG
Sbjct: 185 KLAKSKRVMNRLEKCAEMGRLKVVAIDEVHCCSQWGHDFRPDFKFLNVLKRQFKGVPILG 244
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT V+ DV+ +L I VV +A FNRPNL+YEVR KP++ + LDEL L++ RF
Sbjct: 245 LTATATADVIDDVKNILSIPAAVVFRAGFNRPNLYYEVRNKPSSSEQFLDELVSLINDRF 304
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSI 279
QSGIIY S KECEDL LR+R ++ + YHA LES+ ++
Sbjct: 305 DGQSGIIYCFSRKECEDLTHALRSRKIKAAHYHAYLESDKRSRTHERWIGGEVDVIVATV 364
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
AFG+GIDK +VR+VIHH ++KSMEN+YQ S G
Sbjct: 365 AFGMGIDKTDVRYVIHHSMAKSMENYYQESGRAG 398
>gi|301787243|ref|XP_002929036.1| PREDICTED: ATP-dependent DNA helicase Q1-like [Ailuropoda
melanoleuca]
Length = 661
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 141/335 (42%), Positives = 195/335 (58%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PWS +V+ VL++ F L FR QL IN+ + KD ++MPTG
Sbjct: 87 DFPWSGKVKDVLQTVFKLQRFRLLQLETINVTMSGKDVFLVMPTGGGKSLCYQLPALCSD 146
Query: 94 ------------------LLKKKKICLMT-------------------ESSSLKLLYVSP 116
+LK+ I T +SS LKL+YV+P
Sbjct: 147 GFTLVICPLISLMEDQLMVLKQLGISATTLNASSSKEHVKWVHAEMVNKSSKLKLIYVTP 206
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 207 EKIAKSKMFMSRLEKAYEAKRFTRIAVDEVHCCSHWGHDFRPDYKALGILKRQFPNTALM 266
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT+ V+ D QK+L +E C A FNRPNL+YE+R KP+ +D ++++ L++ R
Sbjct: 267 GLTATATSHVLKDAQKILCVEKCFTFTASFNRPNLYYEIRQKPSNTEDFIEDIVKLINGR 326
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE----SNV--------------S 278
++ QSGIIY S K+ E + L+ G++ AYHA +E +NV +
Sbjct: 327 YKGQSGIIYCFSQKDSEQVTVSLQKLGIQAGAYHANMEPEDKTNVHRRWSANEIQVVVAT 386
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 387 VAFGMGIDKPDVRFVIHHSMSKSIENYYQESGRAG 421
>gi|281340169|gb|EFB15753.1| hypothetical protein PANDA_019119 [Ailuropoda melanoleuca]
Length = 640
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 141/335 (42%), Positives = 195/335 (58%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PWS +V+ VL++ F L FR QL IN+ + KD ++MPTG
Sbjct: 66 DFPWSGKVKDVLQTVFKLQRFRLLQLETINVTMSGKDVFLVMPTGGGKSLCYQLPALCSD 125
Query: 94 ------------------LLKKKKICLMT-------------------ESSSLKLLYVSP 116
+LK+ I T +SS LKL+YV+P
Sbjct: 126 GFTLVICPLISLMEDQLMVLKQLGISATTLNASSSKEHVKWVHAEMVNKSSKLKLIYVTP 185
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 186 EKIAKSKMFMSRLEKAYEAKRFTRIAVDEVHCCSHWGHDFRPDYKALGILKRQFPNTALM 245
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT+ V+ D QK+L +E C A FNRPNL+YE+R KP+ +D ++++ L++ R
Sbjct: 246 GLTATATSHVLKDAQKILCVEKCFTFTASFNRPNLYYEIRQKPSNTEDFIEDIVKLINGR 305
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE----SNV--------------S 278
++ QSGIIY S K+ E + L+ G++ AYHA +E +NV +
Sbjct: 306 YKGQSGIIYCFSQKDSEQVTVSLQKLGIQAGAYHANMEPEDKTNVHRRWSANEIQVVVAT 365
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 366 VAFGMGIDKPDVRFVIHHSMSKSIENYYQESGRAG 400
>gi|395839223|ref|XP_003792496.1| PREDICTED: ATP-dependent DNA helicase Q1 [Otolemur garnettii]
Length = 648
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 138/335 (41%), Positives = 192/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PWS +V+ VL++ F L FRP QL IN + K+ ++MPTG
Sbjct: 73 DFPWSGKVKDVLQNVFKLQKFRPLQLETINATMAGKEVFLVMPTGGGKSLCYQLPALCSD 132
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ +I ++ ++S LKL+YV+P
Sbjct: 133 GFTLVICPLISLMEDQLMVLKQLEISATMLNASSSKEHVKWVHAEMLNKNSKLKLIYVTP 192
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 193 EKIAKSKMFMSRLEKAYEAKRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNTSLI 252
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L + C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 253 GLTATATNHVLKDAQKILCVGKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 312
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L++ G+ AYHA +E +
Sbjct: 313 YKGQSGIIYCFSQKDSEQVTGSLQSLGINAGAYHANMEPEDKTRVHRSWAANELQVVVAT 372
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 373 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 407
>gi|351704749|gb|EHB07668.1| ATP-dependent DNA helicase Q1 [Heterocephalus glaber]
Length = 677
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 140/335 (41%), Positives = 194/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK------------ 93
D+PWSD+V+ VL++ F L FRP QL IN+ + K+ ++MPT GK
Sbjct: 107 DFPWSDKVKDVLQNVFKLQKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD 166
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 167 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSKLKLIYVTP 226
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 227 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNTSLI 286
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L +E C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 287 GLTATATNHVLKDAQKILCVEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 346
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+ G+ AYHA +E +
Sbjct: 347 YKGQSGIIYCFSQKDSEQVTISLQKLGIHAGAYHANMEPEDKTKVHTRWSANELQVVVAT 406
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VR+VIHH +SKSMEN+YQ S G
Sbjct: 407 VAFGMGIDKPDVRYVIHHSMSKSMENYYQESGRAG 441
>gi|149714020|ref|XP_001502209.1| PREDICTED: ATP-dependent DNA helicase Q1 [Equus caballus]
Length = 649
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 204/335 (60%), Gaps = 25/335 (7%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++PWS +V+ VL++ F L FR QL IN+ + K+ ++MPT S ++ ++
Sbjct: 72 DFPWSGKVKDVLQNVFKLRVFRLLQLETINVTMSGKEVFLVMPTGGGKSLCYQLPALCSD 131
Query: 62 KFNLT-----DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSP 116
F L +QL + + + + + +K ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLEQLGISATMLNASSSKEHVKWVHAEMVNKNSKLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK++KS+ FM++L+K Y+AG RIA+DEVHCCS WGHDFRPDY+ L +LK FP+ ++
Sbjct: 192 EKISKSRMFMSRLEKAYEAGRFTRIAVDEVHCCSHWGHDFRPDYKALGVLKRQFPNTSLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT+ V+ D Q++L +E C+ A FNRPNL+YEVR KP+ +D ++++ L+ R
Sbjct: 252 GLTATATSHVLKDAQEILCVEKCLTFTASFNRPNLYYEVRQKPSNTEDFIEDVVKLIHGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+ G+ AYHA +E +
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTVSLQKLGIHAGAYHANMEPEDKTKVHRRWSANEIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|358679347|ref|NP_001240636.1| ATP-dependent DNA helicase Q1 [Sus scrofa]
Length = 649
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 141/335 (42%), Positives = 194/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK------------ 93
D+PWS +V+ VL++ F L FRP QL IN+ + K+ ++MPT GK
Sbjct: 72 DFPWSGKVKEVLQNIFKLQKFRPLQLETINVTMSGKEVFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSKLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIAIDEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAIDEVHCCSQWGHDFRPDYKALGILKRQFPNTSLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT+ V+ D QK+L +E C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATSHVLKDAQKILCVEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+ G+ AYHA +E +
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTVSLQKLGIHAGAYHANMEPEDKTTVHRRWSANEIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|444719769|gb|ELW60560.1| ATP-dependent DNA helicase Q1, partial [Tupaia chinensis]
Length = 648
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 196/335 (58%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK------------ 93
D+PWS +V+ VL++ F L FR QL IN+ + K+ ++MPT GK
Sbjct: 70 DFPWSGKVKDVLQNVFKLQKFRALQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD 129
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S+LKL+YV+P
Sbjct: 130 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSNLKLIYVTP 189
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 190 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNTSLI 249
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT+ V+ D QK+L +E C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 250 GLTATATSHVLKDAQKILCVEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDVVKLINGR 309
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+N G+ AYHA +E + +
Sbjct: 310 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANMEPDDKTKVHRRWSANEIQVIVAT 369
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRF+IHH +SKSMEN+YQ S G
Sbjct: 370 VAFGMGIDKPDVRFIIHHSMSKSMENYYQESGRAG 404
>gi|62858709|ref|NP_001016316.1| RecQ protein-like (DNA helicase Q1-like) [Xenopus (Silurana)
tropicalis]
gi|89266858|emb|CAJ83846.1| RecQ protein-like (DNA helicase Q1-like) [Xenopus (Silurana)
tropicalis]
gi|213624210|gb|AAI70790.1| RecQ protein-like (DNA helicase Q1-like) [Xenopus (Silurana)
tropicalis]
Length = 558
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 142/335 (42%), Positives = 191/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL--KKKKIC-- 101
D+ WS ++R L + F L FR QL IN + +D +IMPT GK L + +C
Sbjct: 74 DFLWSQKIRDALCNSFQLRSFRSLQLETINATMAGRDVFLIMPTGGGKSLCYQLPAVCSD 133
Query: 102 ---------------------------------------------LMTESSSLKLLYVSP 116
+ ++S LKLLYV+P
Sbjct: 134 GFTLVICPLVSLMEDQLMVLDRLGVSATSLNASSSKEHVKWVHGEMTNKNSRLKLLYVTP 193
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+AG LAR+A+DEVHCCS WGHDFRPDY+ L ILK FP+ P++
Sbjct: 194 EKIAKSKLFMSRLEKAYQAGLLARVAVDEVHCCSQWGHDFRPDYKTLGILKRQFPNSPLI 253
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATATT V+ D QK+L + + A FNRPNLFYEVR+KP++ +D + ++ L++ R
Sbjct: 254 GLTATATTHVLKDAQKILCVPKPLTFTASFNRPNLFYEVRLKPSSSQDFIADIVKLINSR 313
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
+R QSGIIY S K+ E + L+ G+R YHA +E +
Sbjct: 314 YRGQSGIIYCFSQKDSEHVTMSLQKLGIRAGTYHANMEPRDKTKVHTKWTANEIQIVVAT 373
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 374 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 408
>gi|56207957|emb|CAI21096.1| novel protein similar to vertebrate RecQ protein-like DNA helicase
Q1-like (RECQL) [Danio rerio]
Length = 639
Score = 266 bits (681), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 145/345 (42%), Positives = 198/345 (57%), Gaps = 71/345 (20%)
Query: 38 KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG----- 92
K+D +D+ WS V+ L + F L+ FRP Q AAIN+++ KD ++MPTG
Sbjct: 68 KQDLQHYEDSDFSWSKEVQVNLCNIFQLSKFRPLQRAAINLSMSGKDLFLVMPTGRGKSL 127
Query: 93 ---------------------------------------------KLLKKKKICLMTESS 107
K K+ + MT+ +
Sbjct: 128 CYQLPALCSKGFTLVIAPLVSLMEDQLMYLQSVNVPAVTLNASSSKEDSKRILAGMTDKN 187
Query: 108 S-LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
S KLLYV+PEK+AKSK M+KL+K + G LARIA+DEVHCCS WGHDFRPDY+ L IL
Sbjct: 188 SPFKLLYVTPEKIAKSKLLMSKLEKAFNMGLLARIAVDEVHCCSQWGHDFRPDYKLLGIL 247
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
K FP+VP++GLTATAT+ V+ D QK+L +++ V + APFNRPNL+YEVR K +DC
Sbjct: 248 KRQFPNVPLIGLTATATSNVLKDCQKILCVQEPVTLTAPFNRPNLYYEVRFKD--NEDCT 305
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------- 276
D++A L+ R++NQSGI+Y S K+ E + EL+ R + YHA +E +
Sbjct: 306 DQIASLIRGRYKNQSGIVYVFSQKDAEVVATELQKRDIVAQPYHANMEPSHKSLVHQRWS 365
Query: 277 --------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDK +VRFVIHH +SKS+EN+YQ S G
Sbjct: 366 SKKIQVVVATVAFGMGIDKADVRFVIHHTISKSIENYYQESGRAG 410
>gi|291392532|ref|XP_002712674.1| PREDICTED: RecQ protein-like [Oryctolagus cuniculus]
Length = 887
Score = 266 bits (681), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 192/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK------------ 93
D+PWS RV+ L++ F L FR QL IN + K+ ++MPT GK
Sbjct: 310 DFPWSGRVKDTLQNTFRLQKFRQLQLETINATMAGKEVFLVMPTGGGKSLCYQLPALCSD 369
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ + ++ ++S LKL+YV+P
Sbjct: 370 GFTLVICPLISLMEDQLMVLKQLGVSATMLNASSSKEHVKWVHAEMVNKNSKLKLIYVTP 429
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 430 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNTSLI 489
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L +E C+ A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 490 GLTATATNHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 549
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+N G+ AYHA +E +
Sbjct: 550 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANMEPEDKTKVHTRWSANEIQVVVAT 609
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 610 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 644
>gi|118151080|ref|NP_001071459.1| ATP-dependent DNA helicase Q1 [Bos taurus]
gi|117306200|gb|AAI26496.1| RecQ protein-like (DNA helicase Q1-like) [Bos taurus]
gi|296487303|tpg|DAA29416.1| TPA: RecQ protein-like (DNA helicase Q1-like) [Bos taurus]
Length = 649
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 140/335 (41%), Positives = 194/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK------------ 93
D+PWS +V+ VL++ F L FRP QL IN+ + K+ ++MPT GK
Sbjct: 72 DFPWSGKVKDVLQNVFKLQKFRPLQLETINVTMSGKEVFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSPKEHVKWVHAEMVNKNSKLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT+ V+ D QK+L +E C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATSHVLKDAQKILCVEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+ G+ AYHA +E +
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTISLQKLGIPAGAYHANMEPEDKTKVHRRWAANEIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|148540131|ref|NP_001038561.2| ATP-dependent DNA helicase Q1 [Danio rerio]
gi|71679679|gb|AAI00013.1| RecQ protein-like (DNA helicase Q1-like) [Danio rerio]
Length = 639
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 143/336 (42%), Positives = 195/336 (58%), Gaps = 71/336 (21%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG-------------- 92
+D+ WS V+ L + F L+ FRP Q AAIN+++ KD ++MPTG
Sbjct: 77 SDFSWSKEVQVNLCNIFQLSKFRPLQRAAINLSMSGKDLFLVMPTGRGKSLCYQLPALCS 136
Query: 93 ------------------------------------KLLKKKKICLMTESSS-LKLLYVS 115
K K+ + MT+ +S KLLYV+
Sbjct: 137 KGFTLVIAPLVSLMEDQLMYLQSVNVPAVTLNASSSKEDSKRILAGMTDKNSPFKLLYVT 196
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PEK+AKSK M+KL+K + G LARIA+DEVHCCS WGHDFRPDY+ L ILK FP+VP+
Sbjct: 197 PEKIAKSKLLMSKLEKAFNMGLLARIAVDEVHCCSQWGHDFRPDYKLLGILKRQFPNVPL 256
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+GLTATAT+ V+ D QK+L +++ V + APFNRPNL+YEVR K +DC D++A L+
Sbjct: 257 IGLTATATSNVLKDCQKILCVQEPVTLTAPFNRPNLYYEVRFKD--NEDCTDQIASLIRG 314
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
R++NQSGI+Y S K+ E + EL+ R + YHA +E +
Sbjct: 315 RYKNQSGIVYVFSQKDAEVVATELQKRDIVAQPYHANMEPSHKSLVHQRWSSKKIQVVVA 374
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDK +VRFVIHH +SKS+EN+YQ S G
Sbjct: 375 TVAFGMGIDKADVRFVIHHTISKSIENYYQESGRAG 410
>gi|440908097|gb|ELR58155.1| ATP-dependent DNA helicase Q1, partial [Bos grunniens mutus]
Length = 649
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 140/335 (41%), Positives = 194/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK------------ 93
D+PWS +V+ VL++ F L FRP QL IN+ + K+ ++MPT GK
Sbjct: 72 DFPWSGKVKDVLQNVFKLQKFRPLQLETINVTMSGKEVFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSKLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT+ V+ D QK+L +E C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATSHVLKDAQKILCVEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+ G+ AYHA +E +
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTISLQKLGIPAGAYHANMEPEDKTKVHRRWAANEIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|355716039|gb|AES05481.1| RecQ protein-like protein [Mustela putorius furo]
Length = 592
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 195/335 (58%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK------------ 93
D+PWSD+V+ VL++ F L FR QL IN+ + K+ ++MPT GK
Sbjct: 17 DFPWSDKVKDVLQNVFKLQKFRLLQLETINVTMSGKEVFLVMPTGGGKSLCYQLPALCSD 76
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 77 GFTLVICPLISLMEDQLMVLKQLGISAXMLNASSSKEHVKWVHAEMVNKNSKLKLIYVTP 136
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 137 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSHWGHDFRPDYKALGILKRQFPNTALM 196
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT+ V+ DVQK+L +E C A FNRPNL+YE+R KP+ +D +++ L++ R
Sbjct: 197 GLTATATSHVLKDVQKILCVEKCFTFTASFNRPNLYYEIRQKPSNTEDLFEDIVKLINGR 256
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+ G++ AYHA +E +
Sbjct: 257 YKGQSGIIYCFSQKDSEQVTVSLQKLGIQAGAYHANMEPEDKTDVHRRWSANEIQVVVAT 316
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 317 VAFGMGIDKPDVRFVIHHSMSKSIENYYQESGRAG 351
>gi|344266668|ref|XP_003405402.1| PREDICTED: ATP-dependent DNA helicase Q1 [Loxodonta africana]
Length = 648
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 190/335 (56%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD----------------------- 84
D+PWSDRV+ VLK+ F L FR QL IN+ + K+
Sbjct: 72 DFPWSDRVKDVLKNVFKLQKFRSLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD 131
Query: 85 --AIIIMPTGKLLKKKKICL--------------------------MTESSSLKLLYVSP 116
++I P L++ + + L + ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGVSATMLNASSSKEHVKWVHAEMVNKNSKLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM+KL+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP ++
Sbjct: 192 EKIAKSKMFMSKLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPSTSLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L ++ C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATNHVLKDAQKILCVDKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+N G+ AYHA +E +
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANMEPEDKTRVHRKWSASEIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSISKSMENYYQESGRAG 406
>gi|395538504|ref|XP_003771219.1| PREDICTED: ATP-dependent DNA helicase Q1 [Sarcophilus harrisii]
Length = 780
Score = 264 bits (675), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 191/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL--KKKKIC-- 101
D+PWS +++ +++ F L FR QL IN+ + K+ ++MPT GK L + +C
Sbjct: 198 DFPWSGKIKDAMQNVFKLQKFRSLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPAVCSD 257
Query: 102 ---------------------------------------------LMTESSSLKLLYVSP 116
++ ++S LKL+YV+P
Sbjct: 258 GFTLVICPLISLMEDQLMVLEQLGVSATLLNASSTKEHVKWVHAEMVNKNSKLKLIYVTP 317
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+AG RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 318 EKIAKSKMFMSRLEKAYEAGRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNTSLI 377
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L +E C A FNRPNL+YEVR KP+ D ++++ L++ R
Sbjct: 378 GLTATATNHVLKDAQKILCVEKCFTFTASFNRPNLYYEVRQKPSNTDDFIEDIVKLINGR 437
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+ G++ AYHA +E +
Sbjct: 438 YKGQSGIIYCFSQKDSEQVTVSLQKLGIQAGAYHANMEPRDKTAVHKKWSANKIQVVVAT 497
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 498 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 532
>gi|198429056|ref|XP_002130932.1| PREDICTED: similar to MGC131022 protein [Ciona intestinalis]
Length = 652
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 146/335 (43%), Positives = 188/335 (56%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG--------------- 92
D+PWS VRS+LKS F + DFR QL AIN L +D I+IM TG
Sbjct: 67 DFPWSKSVRSILKSTFRMDDFRSKQLEAINATLSGRDVILIMSTGGGKSLTYQLPALVGK 126
Query: 93 ---------------------------KLL---------KKKKICLMTESSSLKLLYVSP 116
KLL K + ++S S +LLYV+P
Sbjct: 127 GITVVISPLVSLMEDQIISLNRFGIEAKLLNAASTKDEVKHVHQSMTSQSPSFRLLYVTP 186
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK++KSK FM +L+K YK+ L RIAIDEVHC S WG+DFRPDY+ L ILK FP PI+
Sbjct: 187 EKISKSKRFMAQLEKCYKSVNLNRIAIDEVHCASQWGNDFRPDYKILGILKRQFPKSPII 246
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTAT+T KV D +KML I +V K +R NLFY+VR KP D + ++ L++
Sbjct: 247 GLTATSTDKVTEDTKKMLNIPFALVFKTALDRRNLFYQVREKPNTNDDVIKDIVQLINSN 306
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL-------------ESNV-----S 278
F+NQ GIIY S K C ++ L RG++ S YHA+L ++N+ +
Sbjct: 307 FKNQPGIIYCFSRKNCAEVASSLNKRGIKSSEYHAQLTPDDKTKVHHMWSDNNIQVICAT 366
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
IAFG+GIDKPNVRFVIHH +SKS+EN+YQ S G
Sbjct: 367 IAFGMGIDKPNVRFVIHHSMSKSVENYYQESGRAG 401
>gi|348537236|ref|XP_003456101.1| PREDICTED: ATP-dependent DNA helicase Q1 [Oreochromis niloticus]
Length = 651
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 139/339 (41%), Positives = 196/339 (57%), Gaps = 75/339 (22%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC----- 101
TD+PWS +V LK+ F+L++FRP QL AIN+ + KD ++MPTG+ K +C
Sbjct: 90 TDFPWSSKVGQHLKATFHLSNFRPLQLKAINLTMSGKDLFLVMPTGR---GKSLCYQLPA 146
Query: 102 --------------------------------LMTESSS-----------------LKLL 112
++ SSS KL+
Sbjct: 147 ICSNGFTLVITPLVSLMEDQLMYLKTIDVSAVMLNASSSREHAKMVMAGMTDPKAPFKLV 206
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
YV+PEK+AKSK M++L+K YKA L+RIA+DEVHCCS WGHDFRPDY+ L ILK FP
Sbjct: 207 YVTPEKIAKSKLLMSRLEKAYKANLLSRIAVDEVHCCSQWGHDFRPDYKLLGILKRQFPK 266
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
VP+LGLTATAT+ V+ D +K+L + + + A FNR NL+YEVRIK + + ++++A L
Sbjct: 267 VPLLGLTATATSSVLKDCEKILCVPQAITLTASFNRTNLYYEVRIKDSDSEASVNDIAAL 326
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
+ ++++QSGI+Y S K+ E + EL+ R + YHA ++S
Sbjct: 327 IKSKYKDQSGIVYVFSQKDAELVSAELQKRDILAYPYHANMDSEDKSRVHRKWTSNKIQV 386
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 387 VVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 425
>gi|410963996|ref|XP_003988543.1| PREDICTED: ATP-dependent DNA helicase Q1 [Felis catus]
Length = 804
Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 193/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PWS +V+ VL++ F L FR QL IN+ + K+ ++MPTG
Sbjct: 225 DFPWSGKVKEVLQNVFKLQRFRLLQLETINVTMSGKEVFLVMPTGGGKSLCYQLPALCSD 284
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 285 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSPKEHVKWVHAEMVNKNSKLKLIYVTP 344
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 345 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSHWGHDFRPDYKALGILKRQFPNTALI 404
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT+ V+ D QK+L +E C A FNRPNL+YE+R KP+ +D ++++ L++ R
Sbjct: 405 GLTATATSHVLKDAQKILCVEKCFTFTASFNRPNLYYEIRQKPSNTEDFIEDIVKLINGR 464
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+ G++ AYHA +E +
Sbjct: 465 YKGQSGIIYCFSQKDSEQVTVSLQKLGIQAGAYHANMEPEDKTKVHRRWSANEIQVVVAT 524
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 525 VAFGMGIDKPDVRFVIHHSMSKSIENYYQESGRAG 559
>gi|449669780|ref|XP_002159097.2| PREDICTED: ATP-dependent DNA helicase Q1-like [Hydra
magnipapillata]
Length = 638
Score = 263 bits (672), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 145/351 (41%), Positives = 201/351 (57%), Gaps = 70/351 (19%)
Query: 38 KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK-- 93
K+ +I + +PWS+++ + L S F + +FRP QL IN L KKD I++MPT GK
Sbjct: 57 KQSSIYWLNKSFPWSEKIVNCLLSTFKINNFRPLQLETINATLAKKDCILVMPTGSGKSL 116
Query: 94 ---------------------LLKKKKICL--------------------------MTES 106
L++ + I L +T++
Sbjct: 117 CFQLPAVVSDGFTLVVSPLVSLMEDQLIGLRELKIEAAMLDASSPKAYITNIQNQMITQN 176
Query: 107 SSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
SLKLLYV+PE+LAKSK FM KL+K Y G + RI IDEVHC S WGHDFRPDY+YL IL
Sbjct: 177 GSLKLLYVTPERLAKSKRFMAKLEKAYSVGSINRIVIDEVHCASHWGHDFRPDYKYLGIL 236
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIE-DCVVIKAPFNRPNLFYEVRIKPAAQKDC 225
K FP +PILGLTATA+ KV+ D++ +L ++ DC++ + FNRPNLFYEV+ + +
Sbjct: 237 KRQFPLLPILGLTATASKKVLDDIKDILNLKSDCLLFRGSFNRPNLFYEVKHTLLSPSEL 296
Query: 226 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------- 277
++E+A + RF+ +SGI+Y S K+ E++ L G+ YHA + S+V
Sbjct: 297 VNEIATCIKSRFKEESGIVYCFSRKDSEEVSTLLNRHGINSHCYHADISSDVKTKVHQLW 356
Query: 278 ----------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHS 318
+IAFG+GIDKPNVRFVIH+ LSKS+EN+YQ S G H+
Sbjct: 357 IKGDIQVIVATIAFGMGIDKPNVRFVIHYSLSKSIENYYQESGRAGRDGHN 407
>gi|348569184|ref|XP_003470378.1| PREDICTED: ATP-dependent DNA helicase Q1-like [Cavia porcellus]
Length = 650
Score = 263 bits (672), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 137/335 (40%), Positives = 193/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK------------ 93
D+PWS +V+ VL++ F L FRP QL IN+ + ++ ++MPT GK
Sbjct: 72 DFPWSAKVKDVLQNVFKLQKFRPLQLETINVTMAGEEIFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S+LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSTLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNTSLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L +E C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATNHVLKDAQKILCVEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ +SGIIY S K+ E + L+ G+ YHA +E +
Sbjct: 312 YKGKSGIIYCFSQKDSEQVTISLQKLGIHAGTYHANMEPEDKTKVHTRWSANELQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|426225386|ref|XP_004006847.1| PREDICTED: ATP-dependent DNA helicase Q1 [Ovis aries]
Length = 649
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 138/335 (41%), Positives = 193/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK------------ 93
D+ WS +V+ VL++ F L FRP QL IN+ + K+ ++MPT GK
Sbjct: 72 DFAWSGKVKDVLQNVFKLQKFRPLQLETINVTMSGKEVFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSKLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT+ V+ D QK+L +E C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATSHVLKDAQKILCVEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+ G+ +YHA +E +
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTISLQKLGIPAGSYHANMEPEDKTKVHRRWSANEIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>gi|57106919|ref|XP_543768.1| PREDICTED: ATP-dependent DNA helicase Q1 [Canis lupus familiaris]
Length = 646
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 193/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK------------ 93
D+PWS +V+ VL++ F L FR QL IN+ + KD ++MPT GK
Sbjct: 72 DFPWSSKVKDVLQNIFKLQRFRLLQLETINVTMSGKDVFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMINKNSKLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSHWGHDFRPDYKALGILKRQFPNTALM 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT+ V+ D QK+L + C A FNRPNL+YE+R KP+ +D ++++ L++ R
Sbjct: 252 GLTATATSHVLKDAQKILCVGKCFTFTASFNRPNLYYEIRQKPSNTEDVIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+ G++ AYHA +E +
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTVSLQKLGIQAGAYHANMEPEDKTRVHRRWSANEIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRF+IHH +SKS+EN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFIIHHSMSKSIENYYQESGRAG 406
>gi|156359349|ref|XP_001624732.1| predicted protein [Nematostella vectensis]
gi|156211530|gb|EDO32632.1| predicted protein [Nematostella vectensis]
Length = 582
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 145/337 (43%), Positives = 191/337 (56%), Gaps = 70/337 (20%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG-------------- 92
T + WS V + LK+ F + FR QL IN + D I+IMPTG
Sbjct: 69 TAFSWSQEVEAALKNVFKIDTFRHLQLECINATMSGVDCILIMPTGGGKSLCFQLPAVVS 128
Query: 93 -----------KLLKKK---------KICLMTESSS-----------------LKLLYVS 115
L++ + K L+ SS+ LK+LYV+
Sbjct: 129 KGLTLVVSPLVSLMEDQLWALKRLGIKAALLNASSTREEVNSVHASIVDKKSDLKMLYVT 188
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PEK+AKSK FM KL+K Y++G L+RI IDEVHC S WGHDFRPDY+ L ILK +P VPI
Sbjct: 189 PEKIAKSKRFMAKLEKSYESGLLSRIVIDEVHCTSQWGHDFRPDYKILGILKRQYPGVPI 248
Query: 176 LGLTATATTKVMLDVQKMLQIE-DCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
LGLTATATTKV+ DV+K+L + +C+++KA FNRPNLFYEV+ KP + + L++
Sbjct: 249 LGLTATATTKVIEDVKKILGLHANCLLLKASFNRPNLFYEVQSKPTTNSAFMSTIHQLIT 308
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL--ESN---------------- 276
+RF SGIIY S K+ E + E+ +RG++ + YHA + ES
Sbjct: 309 KRFSGDSGIIYCFSRKDAEQVAIEMSSRGIKAACYHADMPPESRSQVHMAWTTNKLQVVV 368
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDK NVRFVIHH SKSMEN+YQ S G
Sbjct: 369 ATVAFGMGIDKSNVRFVIHHSFSKSMENYYQESGRAG 405
>gi|71987997|ref|NP_001022657.1| Protein K02F3.12, isoform b [Caenorhabditis elegans]
gi|351065879|emb|CCD61880.1| Protein K02F3.12, isoform b [Caenorhabditis elegans]
Length = 608
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 140/337 (41%), Positives = 184/337 (54%), Gaps = 75/337 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC------- 101
+PWSD +LK +F+L FRP Q AAIN + K+DA++I+ TG K +C
Sbjct: 68 FPWSDEATKILKEQFHLEKFRPLQRAAINAVMSKEDAVVILSTGG---GKSLCYQLPALL 124
Query: 102 ------------------------LMTESSSL-----------------------KLLYV 114
L +SSSL +LLYV
Sbjct: 125 ANGLALVVSPLISLVEDQILQLRSLGIDSSSLNANTSKEEAKRVEDAITNKDSKFRLLYV 184
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PEKLAKSK M KL+K G L IAIDEVHCCS WGHDFR DY +L++LK F VP
Sbjct: 185 TPEKLAKSKKMMNKLEKSLSVGFLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKGVP 244
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
ILGLTATAT+ V+ DV+ ML I+ + +A FNR NL Y+V KP ++ +C +E+A +
Sbjct: 245 ILGLTATATSNVLDDVKDMLGIQAALTFRAGFNRSNLKYKVVQKPGSEDECTEEIAKTIK 304
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES------------------N 276
R F Q+GIIY S +CE + + L++ G++ YHA +E
Sbjct: 305 RDFAGQTGIIYCLSRNDCEKVAKALKSHGIKAKHYHAYMEPVDRSGAHQGWISGKIQVIV 364
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKPNVRFVIHH L KS+EN+YQ S G
Sbjct: 365 ATVAFGMGIDKPNVRFVIHHSLPKSIENYYQESGRAG 401
>gi|410931808|ref|XP_003979287.1| PREDICTED: ATP-dependent DNA helicase Q1-like, partial [Takifugu
rubripes]
Length = 610
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 134/339 (39%), Positives = 189/339 (55%), Gaps = 75/339 (22%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC----- 101
+D+PWS V L+ F+L FRP QL IN+ L +D ++MPTG+ K +C
Sbjct: 82 SDFPWSQEVVQHLQDTFHLPRFRPLQLRVINLTLSGRDVFLVMPTGR---GKSLCYQLPA 138
Query: 102 --------------------------------LMTESSS-----------------LKLL 112
++ SSS +L+
Sbjct: 139 LCSKGLTLVVTPLVSLMEDQLMYLQSISVSAAMLNASSSKEHAKSVMAGMTDPTVPFRLV 198
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
YV+PEK+AKSK M++L+K YKA L+RIA+DEVHCCS WGHDFRPDY+ L ILK FP
Sbjct: 199 YVTPEKIAKSKLLMSRLEKAYKAELLSRIAVDEVHCCSQWGHDFRPDYKLLGILKRQFPK 258
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
VP++GLTATAT+ ++ D +K+L + V I A FNR NL+YEVR+K ++++A L
Sbjct: 259 VPLIGLTATATSTILKDCEKILSVRQPVTITASFNRTNLYYEVRVKNCDSDASVEDMASL 318
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
+ ++++QSGI+Y S K+ E + L+ RG+ S YHA ++
Sbjct: 319 IKSKYQHQSGIVYVFSQKDAESVSSALQKRGILASPYHANMDPTDKSHVHRRWSTNKIQV 378
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 379 VVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 417
>gi|268570477|ref|XP_002640754.1| Hypothetical protein CBG24191 [Caenorhabditis briggsae]
gi|296439745|sp|A8WK63.1|RECQ1_CAEBR RecName: Full=Putative ATP-dependent DNA helicase Q1
Length = 618
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/334 (41%), Positives = 185/334 (55%), Gaps = 69/334 (20%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL----------- 95
+PWSD +LK+KF L FRP Q AAIN + K+DAI+I+ T GK L
Sbjct: 68 FPWSDEANQILKNKFRLEKFRPLQSAAINAVMSKEDAIVILSTGGGKSLCYQLPALLAKG 127
Query: 96 --------------------------------------KKKKICLMTESSSLKLLYVSPE 117
K+ + + S+ L+LLYV+PE
Sbjct: 128 LTLVISPLVSLVEDQIMQLQKLGIDAASLNANTPKDEAKRVEQAITKGSTELRLLYVTPE 187
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
KLAKSK M +L+K G L IAIDEVHCCS WGHDFR DY +L++LK F VPILG
Sbjct: 188 KLAKSKRMMNQLEKSLGVGYLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKGVPILG 247
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT+ V+ DV+KML I +V +A FNR NL Y+V KP ++ +C++++ + R+F
Sbjct: 248 LTATATSNVLDDVKKMLGIPVAIVFRAGFNRANLNYKVLTKPGSEDECVEKIVRTIKRKF 307
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES------------------NVSI 279
++GIIY S +CE L + L+ G+R YHA +E ++
Sbjct: 308 SGKTGIIYCLSRNDCEKLAKSLKANGIRAKHYHAYMEPVDRSAAHQKWVSGEIQVIVATV 367
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
AFG+GIDKP+VRFVIHH L KS+EN+YQ S G
Sbjct: 368 AFGMGIDKPDVRFVIHHSLPKSIENYYQESGRAG 401
>gi|7505165|pir||T16536 hypothetical protein K02F3.1 - Caenorhabditis elegans
Length = 886
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/333 (41%), Positives = 183/333 (54%), Gaps = 75/333 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC------- 101
+PWSD +LK +F+L FRP Q AAIN + K+DA++I+ TG K +C
Sbjct: 468 FPWSDEATKILKEQFHLEKFRPLQRAAINAVMSKEDAVVILSTGG---GKSLCYQLPALL 524
Query: 102 ------------------------LMTESSSL-----------------------KLLYV 114
L +SSSL +LLYV
Sbjct: 525 ANGLALVVSPLISLVEDQILQLRSLGIDSSSLNANTSKEEAKRVEDAITNKDSKFRLLYV 584
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PEKLAKSK M KL+K G L IAIDEVHCCS WGHDFR DY +L++LK F VP
Sbjct: 585 TPEKLAKSKKMMNKLEKSLSVGFLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKGVP 644
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
ILGLTATAT+ V+ DV+ ML I+ + +A FNR NL Y+V KP ++ +C +E+A +
Sbjct: 645 ILGLTATATSNVLDDVKDMLGIQAALTFRAGFNRSNLKYKVVQKPGSEDECTEEIAKTIK 704
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES------------------N 276
R F Q+GIIY S +CE + + L++ G++ YHA +E
Sbjct: 705 RDFAGQTGIIYCLSRNDCEKVAKALKSHGIKAKHYHAYMEPVDRSGAHQGWISGKIQVIV 764
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
++AFG+GIDKPNVRFVIHH L KS+EN+YQ S
Sbjct: 765 ATVAFGMGIDKPNVRFVIHHSLPKSIENYYQAS 797
>gi|71987993|ref|NP_001022656.1| Protein K02F3.12, isoform a [Caenorhabditis elegans]
gi|75024696|sp|Q9TXJ8.3|RECQ1_CAEEL RecName: Full=Putative ATP-dependent DNA helicase Q1
gi|351065878|emb|CCD61879.1| Protein K02F3.12, isoform a [Caenorhabditis elegans]
Length = 631
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 140/337 (41%), Positives = 184/337 (54%), Gaps = 75/337 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC------- 101
+PWSD +LK +F+L FRP Q AAIN + K+DA++I+ TG K +C
Sbjct: 91 FPWSDEATKILKEQFHLEKFRPLQRAAINAVMSKEDAVVILSTGG---GKSLCYQLPALL 147
Query: 102 ------------------------LMTESSSL-----------------------KLLYV 114
L +SSSL +LLYV
Sbjct: 148 ANGLALVVSPLISLVEDQILQLRSLGIDSSSLNANTSKEEAKRVEDAITNKDSKFRLLYV 207
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PEKLAKSK M KL+K G L IAIDEVHCCS WGHDFR DY +L++LK F VP
Sbjct: 208 TPEKLAKSKKMMNKLEKSLSVGFLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKGVP 267
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
ILGLTATAT+ V+ DV+ ML I+ + +A FNR NL Y+V KP ++ +C +E+A +
Sbjct: 268 ILGLTATATSNVLDDVKDMLGIQAALTFRAGFNRSNLKYKVVQKPGSEDECTEEIAKTIK 327
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES------------------N 276
R F Q+GIIY S +CE + + L++ G++ YHA +E
Sbjct: 328 RDFAGQTGIIYCLSRNDCEKVAKALKSHGIKAKHYHAYMEPVDRSGAHQGWISGKIQVIV 387
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKPNVRFVIHH L KS+EN+YQ S G
Sbjct: 388 ATVAFGMGIDKPNVRFVIHHSLPKSIENYYQESGRAG 424
>gi|47217239|emb|CAF96762.1| unnamed protein product [Tetraodon nigroviridis]
Length = 523
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 136/338 (40%), Positives = 188/338 (55%), Gaps = 75/338 (22%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC------ 101
D+PWS V LK F+L FRP QL A+N+ L +D ++MPTG+ K +C
Sbjct: 1 DFPWSKEVAQHLKDTFHLPKFRPLQLRAVNLTLSGRDLFLVMPTGR---GKSLCYQLPAL 57
Query: 102 -------------------------------LMTESSS-----------------LKLLY 113
++ SSS +L+Y
Sbjct: 58 CSKGFTLVVTPLVSLMEDQVMYLQSISVSAAMLNASSSKEHAKTVLAGLTDPKTPFRLVY 117
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
V+PEK+AKSK M++L+K YKA L+RIA+DEVHCCS WGHDFRPDY+ L ILK FP V
Sbjct: 118 VTPEKIAKSKLLMSRLEKAYKADLLSRIAVDEVHCCSQWGHDFRPDYKLLGILKRQFPKV 177
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
P++GLTATAT V+ D +K+L + + I A FNR NL+YEVR+K + ++++A L+
Sbjct: 178 PLIGLTATATRGVLEDCEKILCVRQPITITASFNRTNLYYEVRVKNSDNDASVNDIASLI 237
Query: 234 SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------- 276
R+R QSGI+Y S K+ E + EL+ R + YHA ++ +
Sbjct: 238 KTRYREQSGIVYVFSQKDAESVSSELQKRDILAYPYHANMDPSDKSRIHRRWTTNKIQVV 297
Query: 277 -VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 298 VATVAFGMGIDKPDVRFVIHHTISKSVENYYQESGRAG 335
>gi|340374034|ref|XP_003385544.1| PREDICTED: ATP-dependent DNA helicase Q1-like [Amphimedon
queenslandica]
Length = 775
Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 188/335 (56%), Gaps = 70/335 (20%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---------------- 92
+PWS + + L S F + FRP QL IN + K+D ++IMPTG
Sbjct: 68 FPWSQILLTTLNSVFKIESFRPLQLPCINALMSKRDVMLIMPTGGGKSLCYQLPAVISGG 127
Query: 93 --------------KLLKKKKI---CLMTESSS-------------------LKLLYVSP 116
+L+ K++ C M SSS LKL+YV+P
Sbjct: 128 FALVISPLVSLMEDQLMSVKRLGINCAMINSSSPQAHVKKVHSSMIDKSDRSLKLVYVTP 187
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM+KL K Y G L+ I IDEVHC S WGHDFRPDY+ L ILK FP+ P+L
Sbjct: 188 EKIAKSKVFMSKLDKAYGLGRLSIIVIDEVHCASQWGHDFRPDYKVLGILKRQFPNSPLL 247
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT+KV D + +L + C++ KA +NRPNLFYEV K ++QK+ +D + L++ R
Sbjct: 248 GLTATATSKVFSDCKNILNLRSCLIFKASYNRPNLFYEVHNKISSQKEQVDTMIQLINSR 307
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
F++QSGI+Y S K+ E + L+ + + YH +++ +
Sbjct: 308 FKDQSGIVYCFSQKDAEQVSIALQTGSISATCYHGGMDAGDRTKAHTEWYDGKIQVIVAT 367
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDK NVRF++HH +SKSMEN+YQ S G
Sbjct: 368 VAFGMGIDKSNVRFIMHHSISKSMENYYQESGRAG 402
>gi|341891862|gb|EGT47797.1| hypothetical protein CAEBREN_03628 [Caenorhabditis brenneri]
Length = 617
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 135/334 (40%), Positives = 188/334 (56%), Gaps = 69/334 (20%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---------------- 92
+ WSD +LK +F+L FRP Q AAIN + K+DA++I+ TG
Sbjct: 68 FSWSDEANKILKDRFHLESFRPLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPALLTKG 127
Query: 93 --------------KLLKKKKI-----CL----------------MTESSSLKLLYVSPE 117
++L+ +K+ CL + S +LLYV+PE
Sbjct: 128 LTLVVSPLISLVEDQILQLRKLNIDASCLNASTSKEETKRVEDAITNKDSQFRLLYVTPE 187
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
KLAKSK M KL+K G L IAIDEVHCCS WGHDFR DY +L++LK F VPILG
Sbjct: 188 KLAKSKRMMNKLEKSLSVGFLKLIAIDEVHCCSQWGHDFRTDYAFLNVLKRQFKGVPILG 247
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT+ V+ DV+ ML I+ +V +A FNR NL YEV K ++ ++C +E+A +++ +F
Sbjct: 248 LTATATSNVLDDVKDMLGIQAALVFRAGFNRSNLKYEVISKKSSDEECAEEIAHVINTQF 307
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSI 279
Q+GI+Y S +CE + L+ +G+R YHA +E + ++
Sbjct: 308 SGQTGIVYCLSRNDCEKMATLLKTKGIRAKHYHAYMEPSEKSSSHQNWISGKIQVIVATV 367
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
AFG+GIDKP+VRFVIHH + KS+EN+YQ S G
Sbjct: 368 AFGMGIDKPDVRFVIHHTIPKSIENYYQESGRAG 401
>gi|296085510|emb|CBI29242.3| unnamed protein product [Vitis vinifera]
Length = 710
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 139/340 (40%), Positives = 194/340 (57%), Gaps = 36/340 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DR 54
+ W + V + F ++ +R NQ IN + +D ++IM S D
Sbjct: 71 FDWDAQADDVRFNIFGISTYRANQREIINAVMSGRDVLVIMAAGGGKSLCYQLPAILRDG 130
Query: 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKI--CLMTESSSLKLL 112
V V+ +L + LAA+ I A ++ T +K I L LK+L
Sbjct: 131 VALVVSPLLSLIQDQVMGLAALGIP-----AYMLTSTTSKEDEKFIYKALEKGDGDLKIL 185
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
YV+PEK++KSK F++KL+K + +GCL+ I+IDE HCCS WGHDFRPDY+ L ILKT FPD
Sbjct: 186 YVTPEKISKSKRFVSKLEKCHHSGCLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPD 245
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
VP++ LTATAT KV D+ +ML I C+ + NRPNLFY VR K + + +DE+A+
Sbjct: 246 VPVVALTATATKKVQNDLMEMLHIPKCIKFVSTVNRPNLFYMVREKSSVGRVVIDEIAEY 305
Query: 233 MSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------------- 277
+ + N+SGI+Y S KECE + +ELR RG+ YHA ++ N
Sbjct: 306 IQESYPNNESGIVYCFSRKECEQVAKELRERGISADYYHADMDVNARERVHLRWSNSKLQ 365
Query: 278 ----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GI+KP+VRFVIHH LSKSME +YQ S G
Sbjct: 366 VIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAG 405
>gi|359474777|ref|XP_002267000.2| PREDICTED: ATP-dependent DNA helicase Q-like 2-like [Vitis
vinifera]
Length = 711
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 139/340 (40%), Positives = 194/340 (57%), Gaps = 36/340 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DR 54
+ W + V + F ++ +R NQ IN + +D ++IM S D
Sbjct: 71 FDWDAQADDVRFNIFGISTYRANQREIINAVMSGRDVLVIMAAGGGKSLCYQLPAILRDG 130
Query: 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKI--CLMTESSSLKLL 112
V V+ +L + LAA+ I A ++ T +K I L LK+L
Sbjct: 131 VALVVSPLLSLIQDQVMGLAALGIP-----AYMLTSTTSKEDEKFIYKALEKGDGDLKIL 185
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
YV+PEK++KSK F++KL+K + +GCL+ I+IDE HCCS WGHDFRPDY+ L ILKT FPD
Sbjct: 186 YVTPEKISKSKRFVSKLEKCHHSGCLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPD 245
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
VP++ LTATAT KV D+ +ML I C+ + NRPNLFY VR K + + +DE+A+
Sbjct: 246 VPVVALTATATKKVQNDLMEMLHIPKCIKFVSTVNRPNLFYMVREKSSVGRVVIDEIAEY 305
Query: 233 MSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------------- 277
+ + N+SGI+Y S KECE + +ELR RG+ YHA ++ N
Sbjct: 306 IQESYPNNESGIVYCFSRKECEQVAKELRERGISADYYHADMDVNARERVHLRWSNSKLQ 365
Query: 278 ----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GI+KP+VRFVIHH LSKSME +YQ S G
Sbjct: 366 VIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAG 405
>gi|149049047|gb|EDM01501.1| rCG29929, isoform CRA_a [Rattus norvegicus]
Length = 542
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 116/230 (50%), Positives = 161/230 (70%), Gaps = 18/230 (7%)
Query: 102 LMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQ 161
+M ++S LKL+YV+PEK+AKSK FM++L+K Y+AG L +A+DEVHCCS WGHDFRPDY+
Sbjct: 74 MMNKNSHLKLIYVTPEKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYK 133
Query: 162 YLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAA 221
L ILK FP++ ++GLTATAT V+ D QK+L +E C+ A FNRPNL+YEVR KP++
Sbjct: 134 ALGILKRQFPNISLIGLTATATNHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSS 193
Query: 222 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----- 276
+D ++ +A+L++ R++ +SGIIY S K+ E + L+ G+R YHA +E
Sbjct: 194 AEDFIENIANLINGRYKGKSGIIYCFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKV 253
Query: 277 -------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 254 HTQWSANELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 303
>gi|297851930|ref|XP_002893846.1| RECQL2 [Arabidopsis lyrata subsp. lyrata]
gi|297339688|gb|EFH70105.1| RECQL2 [Arabidopsis lyrata subsp. lyrata]
Length = 704
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 140/336 (41%), Positives = 195/336 (58%), Gaps = 28/336 (8%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
+ W R V + F ++ +R NQ IN + +D ++IM S ++ ++L+
Sbjct: 70 FEWDSRADDVRFNVFGISKYRANQKEIINAIMAGRDVLVIMAAGGGKSLCYQLPAILRGG 129
Query: 63 FNLTDFRP----NQLAAINIALLKKDAIIIMPTGKLLKKKKI--CLMTESSSLKLLYVSP 116
L P Q + +A L A ++ T +K + L LK+LYV+P
Sbjct: 130 TTLV-VSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEHDLKILYVTP 188
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK++KSK FM+KL+K + AG L+ I+IDE HCCS WGHDFRPDY+ LSILKT FP VP++
Sbjct: 189 EKVSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPKVPMV 248
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATAT KV D+ +ML I CV + NRPNLFY VR K A K +DE+A+ +
Sbjct: 249 ALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKVVVDEIAEFIRES 308
Query: 237 F-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------ 277
+ N+SGI+Y S KECE + +LR RG+ YHA +++N+
Sbjct: 309 YSNNESGIVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVG 368
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GI+KP+VRFVIHH LSKSME +YQ S G
Sbjct: 369 TVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAG 404
>gi|30692489|ref|NP_174421.2| ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana]
gi|75334308|sp|Q9FT73.1|MED34_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit
34; AltName: Full=ATP-dependent DNA helicase Q-like 2;
AltName: Full=RecQ-like protein 2; Short=AtRecQ2;
Short=AtRecQl2
gi|11121445|emb|CAC14866.1| DNA Helicase [Arabidopsis thaliana]
gi|332193225|gb|AEE31346.1| ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana]
Length = 705
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 141/341 (41%), Positives = 195/341 (57%), Gaps = 36/341 (10%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS 57
+ W R V + F ++ +R NQ IN + +D ++IM Y +R
Sbjct: 70 TFEWDSRADDVRFNVFGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLRG 129
Query: 58 ----VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKI--CLMTESSSLKL 111
V+ +L + LAA+ I+ A ++ T +K + L LK+
Sbjct: 130 GTTLVVSPLLSLIQDQVMGLAALGIS-----AYMLTSTSGKENEKFVYKALEKGEDDLKI 184
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEK++KSK FM+KL+K + AG L+ I+IDE HCCS WGHDFRPDY+ LSILKT FP
Sbjct: 185 LYVTPEKVSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFP 244
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP++ LTATAT KV D+ +ML I CV + NRPNLFY VR K A K +DE+A+
Sbjct: 245 KVPMVALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAE 304
Query: 232 LMSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------- 277
+ + N+SGI+Y S KECE + +LR RG+ YHA +++N+
Sbjct: 305 FIRESYSNNESGIVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKL 364
Query: 278 -----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GI+KP+VRFVIHH LSKSME +YQ S G
Sbjct: 365 QVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAG 405
>gi|224074554|ref|XP_002304389.1| predicted protein [Populus trichocarpa]
gi|222841821|gb|EEE79368.1| predicted protein [Populus trichocarpa]
Length = 718
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 139/339 (41%), Positives = 189/339 (55%), Gaps = 32/339 (9%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
++ W + V + F + +R NQ IN + +D ++IM S D
Sbjct: 74 SFEWDSQADDVRLNIFGIPSYRQNQKEIINAIMSGRDVLVIMAAGGGKSLCYQLPAILRD 133
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLY 113
V V+ +L + L A+ I + K + K L LK+LY
Sbjct: 134 GVALVISPLLSLIQDQVMGLTALGIPAFMLTSTTSKENEKFIYK---ALEKGEGELKILY 190
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
V+PEK++KSK FM+KL+K + AG L+ I+IDE HCCS WGHDFRPDY+ LSILKT F +V
Sbjct: 191 VTPEKISKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKSLSILKTQFSNV 250
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
P++ LTATAT KV DV +ML+I CV + NRPNLFY VR K + K +DE+A+ +
Sbjct: 251 PVVALTATATQKVQYDVMEMLRIPKCVKFVSTVNRPNLFYTVRSKSSVGKVVVDEIAEFI 310
Query: 234 SRRFRN-QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------- 277
+ N +SGI+Y S KECE + ELR RG+ YHA ++ N
Sbjct: 311 QESYSNSESGIVYCFSRKECEQVAAELRERGIAADYYHADMDVNAREKVHTWWSKNKLQV 370
Query: 278 ---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GI+KP+VRFVIHH LSKSME +YQ S G
Sbjct: 371 IVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAG 409
>gi|308481757|ref|XP_003103083.1| hypothetical protein CRE_25739 [Caenorhabditis remanei]
gi|308260459|gb|EFP04412.1| hypothetical protein CRE_25739 [Caenorhabditis remanei]
Length = 630
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/334 (40%), Positives = 186/334 (55%), Gaps = 69/334 (20%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---------------- 92
+ WS +L++KF+L FRP Q AAIN + K+DAI+I+ TG
Sbjct: 68 FSWSQEANDILRNKFHLETFRPLQRAAINAVMSKEDAIVILSTGGGKSLCYQLPALLAKG 127
Query: 93 --------------KLLKKKKICLMTES---------------------SSLKLLYVSPE 117
++L+ +K+ + S S +LLYV+PE
Sbjct: 128 LTLVVSPLVSLVEDQILQLRKLGIDASSLNANTSKEEAKRVEEAITRNDSEFRLLYVTPE 187
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
KLAKSK M KL+K G L IAIDEVHCCS WGHDFR DY +L++LK F VPILG
Sbjct: 188 KLAKSKRMMNKLEKSLAVGFLKLIAIDEVHCCSQWGHDFRTDYGFLNVLKRQFKGVPILG 247
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT+ V+ DV+ ML I+ +V +A FNR NL Y+V K + +C++E+A ++ +RF
Sbjct: 248 LTATATSNVLDDVKDMLGIQAALVFRAGFNRSNLKYQVLPKKGNEDECVEEIAAIIKKRF 307
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSI 279
++GIIY S +CE + + L+ + +R YHA +E N ++
Sbjct: 308 SGETGIIYCLSRNDCEKVAKSLKAQVIRAKHYHAYMEPNDRSACHQSWISGKIQVIVATV 367
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
AFG+GIDKP+VRFVIHH L KS+EN+YQ S G
Sbjct: 368 AFGMGIDKPDVRFVIHHSLPKSIENYYQESGRAG 401
>gi|324502777|gb|ADY41219.1| ATP-dependent DNA helicase Q1 [Ascaris suum]
Length = 502
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/230 (53%), Positives = 158/230 (68%), Gaps = 18/230 (7%)
Query: 102 LMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQ 161
L +SS +LLYV+PEKLAKSK M +L+K + G L +AIDEVHCCS WGHDFRPD++
Sbjct: 65 LTDPNSSFRLLYVTPEKLAKSKRVMNRLEKCAEMGRLKVVAIDEVHCCSQWGHDFRPDFK 124
Query: 162 YLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAA 221
+L++LK F VPILGLTATAT V+ DV+ +L I VV +A FNRPNL+YEVR KP++
Sbjct: 125 FLNVLKRQFKGVPILGLTATATADVIDDVKNILSIPAAVVFRAGFNRPNLYYEVRNKPSS 184
Query: 222 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----- 276
+ LDEL L++ RF QSGIIY S KECEDL LR+R ++ + YHA LES+
Sbjct: 185 SEQFLDELVSLINDRFDGQSGIIYCFSRKECEDLTHALRSRKIKAAHYHAYLESDKRSRT 244
Query: 277 -------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDK +VR+VIHH ++KSMEN+YQ S G
Sbjct: 245 HERWIGGEVDVIVATVAFGMGIDKTDVRYVIHHSMAKSMENYYQESGRAG 294
>gi|432088961|gb|ELK23146.1| ATP-dependent DNA helicase Q1 [Myotis davidii]
Length = 489
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 115/230 (50%), Positives = 158/230 (68%), Gaps = 18/230 (7%)
Query: 102 LMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQ 161
++ ++S LKL+YV+PEK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+
Sbjct: 17 MVNKNSKLKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSHWGHDFRPDYK 76
Query: 162 YLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAA 221
L ILK FP+ ++GLTATAT+ V+ D QK+L +E C A FNRPNL+YEVR KP+
Sbjct: 77 ALGILKRQFPNTALIGLTATATSHVLKDAQKILCVEKCFTFTASFNRPNLYYEVRQKPSN 136
Query: 222 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----- 276
+D ++++ +++ R++ QSGIIY S K+ E + L+ G+R AYHA +E
Sbjct: 137 TEDFIEDIVKVINGRYKGQSGIIYCFSQKDSEQVTGSLQKLGIRAGAYHANMEPEDKTKV 196
Query: 277 -------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 197 HRRWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 246
>gi|255557667|ref|XP_002519863.1| DNA helicase recq1, putative [Ricinus communis]
gi|223540909|gb|EEF42467.1| DNA helicase recq1, putative [Ricinus communis]
Length = 714
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 137/324 (42%), Positives = 183/324 (56%), Gaps = 32/324 (9%)
Query: 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFNLTDF 68
F +T +RPNQ +N + +D ++IM S D V V+ +L
Sbjct: 92 FGITSYRPNQREIVNAVMSGRDVLVIMAAGGGKSLCYQLPAILRDGVSLVISPLISLIQD 151
Query: 69 RPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTK 128
+ L A+ I K + K + K L LK+LYV+PEK++KSK FM+K
Sbjct: 152 QVMGLKALGIPAYKLTSTTSKEDEKFIYK---ALEKGEEMLKILYVTPEKVSKSKRFMSK 208
Query: 129 LQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVML 188
L+K + G L+ IAIDE HCCS WGHDFRPDY+ L ILK FP+VP+L LTATAT KV
Sbjct: 209 LEKCHHRGHLSIIAIDEAHCCSQWGHDFRPDYKNLGILKIQFPNVPVLALTATATQKVQY 268
Query: 189 DVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF-RNQSGIIYTT 247
D+ +ML I CV + NRPNLFY VR K + K +DE+A+ + + N+SGI+Y
Sbjct: 269 DLMEMLHIPKCVRFVSTVNRPNLFYMVREKSSVGKVVIDEIAEFIRESYPNNESGIVYCF 328
Query: 248 SIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPN 289
S KECE + +LR RG+ YHA ++ N ++AFG+GI+KP+
Sbjct: 329 SRKECEQVAADLRERGISADYYHADMDVNAREKVHMRWSQNKLQVIVGTVAFGMGINKPD 388
Query: 290 VRFVIHHCLSKSMENFYQVSIAFG 313
VRFVIHH LSKSME +YQ S G
Sbjct: 389 VRFVIHHSLSKSMETYYQESGRAG 412
>gi|308477330|ref|XP_003100879.1| hypothetical protein CRE_16178 [Caenorhabditis remanei]
gi|308264453|gb|EFP08406.1| hypothetical protein CRE_16178 [Caenorhabditis remanei]
Length = 607
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 133/334 (39%), Positives = 187/334 (55%), Gaps = 69/334 (20%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---------------- 92
+ WS +L++KF+L FRP Q AAIN + K+DA++I+ TG
Sbjct: 49 FSWSQEANDILRNKFHLDTFRPLQRAAINAVMSKEDAVVILITGGGKSLCYQLPALLAKG 108
Query: 93 --------------KLLKKKKICLMTES---------------------SSLKLLYVSPE 117
++L+ +K+ + S S +LLYV+PE
Sbjct: 109 LTLVVSPLVSLVEDQILQLRKLGIDASSLNANTSKEEAKRVEEAITRNDSEFRLLYVTPE 168
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
KLAKSK M KL+K G L IAID+VHCCS WGHDFR DY +L++LK F VPIL
Sbjct: 169 KLAKSKRMMNKLEKSLAVGFLKLIAIDKVHCCSQWGHDFRTDYGFLNVLKRQFKGVPILD 228
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT+ V+ DV+ ML I+ +V +A FNR NL Y+V K ++ +C++E+A ++ +RF
Sbjct: 229 LTATATSNVLDDVKDMLGIQAALVFRAGFNRSNLKYQVLPKKGSEDECVEEIAAIIKQRF 288
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSI 279
++GIIY S +CE + + L+ +G+R YHA +E N ++
Sbjct: 289 SGETGIIYCLSRNDCEKVAKSLKTQGIRAKHYHAYMEPNDRSACHQSWISGKIQVIVATV 348
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
AFG+GIDKP+VRFVIHH L KS+EN+YQ S G
Sbjct: 349 AFGMGIDKPDVRFVIHHSLPKSIENYYQESGRAG 382
>gi|6692125|gb|AAF24590.1|AC007654_6 T19E23.16 [Arabidopsis thaliana]
Length = 849
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 140/351 (39%), Positives = 198/351 (56%), Gaps = 47/351 (13%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVR- 56
+ W R V + F ++ +R NQ IN + +D ++IM Y +R
Sbjct: 104 TFEWDSRADDVRFNVFGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLRG 163
Query: 57 ----------SVLKSKFNLTDFRPNQL-----AAINIALLKKDAIIIMPTGKLLKKKKI- 100
S+++ ++ D QL + +A L A ++ T +K +
Sbjct: 164 GTTLVVSPLLSLIQDQYVCYD----QLLLMIVQVMGLAALGISAYMLTSTSGKENEKFVY 219
Query: 101 -CLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPD 159
L LK+LYV+PEK++KSK FM+KL+K + AG L+ I+IDE HCCS WGHDFRPD
Sbjct: 220 KALEKGEDDLKILYVTPEKVSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPD 279
Query: 160 YQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKP 219
Y+ LSILKT FP VP++ LTATAT KV D+ +ML I CV + NRPNLFY VR K
Sbjct: 280 YKNLSILKTQFPKVPMVALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKS 339
Query: 220 AAQKDCLDELADLMSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV- 277
A K +DE+A+ + + N+SGI+Y S KECE + +LR RG+ YHA +++N+
Sbjct: 340 AVGKLVVDEIAEFIRESYSNNESGIVYCFSRKECEQIAGDLRERGISADYYHADMDANMR 399
Query: 278 -----------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIA 311
++AFG+GI+KP+VRFVIHH LSKSME +YQV ++
Sbjct: 400 EKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQVPVS 450
>gi|256081389|ref|XP_002576953.1| DNA helicase recq1 [Schistosoma mansoni]
gi|353232363|emb|CCD79718.1| putative dna helicase recq1 [Schistosoma mansoni]
Length = 652
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 210/365 (57%), Gaps = 53/365 (14%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFN 64
+PW+ V V K F +++FRP Q+ AIN L +D I++MPT S + L + N
Sbjct: 74 FPWTSEVNRVRKEVFQISEFRPLQITAINAVLDGRDVILVMPTGAGKS--LVYQLPALLN 131
Query: 65 LTDFRPNQLAAINIAL--------------------LKKDAIIIMPTGKLLKKKK--ICL 102
+ F+ N ++ L L+ D I ++ L++++ + L
Sbjct: 132 VNAFKVNGRYRGSLTLVISPLVSLMVDQSINLTRYSLEPDTIAVLDANTPLQEQRRILSL 191
Query: 103 MTE---------SSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWG 153
+ E S+L+LLYV+PEKLAKSK + +L+ +Y LA IAIDEVHC S WG
Sbjct: 192 LAEKPSKTNASTKSNLRLLYVTPEKLAKSKLLLNRLEIVYSTNRLACIAIDEVHCASQWG 251
Query: 154 HDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKM--LQIEDCVVIKAPFNRPNL 211
HDFRPDY++L IL+ F +VPI+GLTATATT++++D++ M L ++ C+V++ +NR NL
Sbjct: 252 HDFRPDYKFLHILRRQFSNVPIIGLTATATTEIIVDIENMLGLNVDKCLVLRTSYNRENL 311
Query: 212 FYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA 271
Y V+ + K + L +L+++ + NQSGI+Y S K+ ED+ EL+N GL+V+ YHA
Sbjct: 312 NYYVKPVSGSIKASVKYLYELINKNYINQSGIVYCFSQKDTEDVSSELKNFGLKVAPYHA 371
Query: 272 KLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L+ N ++AFG+GIDK +VRFVIH SKS+EN+YQ S G
Sbjct: 372 NLDFNYRSTVHSGWSQGKIQVIVATVAFGMGIDKADVRFVIHFSSSKSLENYYQESGRAG 431
Query: 314 LGKHS 318
+S
Sbjct: 432 RDSNS 436
>gi|242040001|ref|XP_002467395.1| hypothetical protein SORBIDRAFT_01g027020 [Sorghum bicolor]
gi|241921249|gb|EER94393.1| hypothetical protein SORBIDRAFT_01g027020 [Sorghum bicolor]
Length = 646
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 138/340 (40%), Positives = 195/340 (57%), Gaps = 36/340 (10%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
++PW + + F +T +R NQ IN + +D ++IM S D
Sbjct: 70 SFPWDSQADDTRLNIFGITSYRSNQREIINAVMSGRDVLVIMAAGGGKSLCYQLPAVLRD 129
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKI--CLMTESSSLKL 111
+ V+ +L + L A+ I A ++ T +K I L LK+
Sbjct: 130 GIALVVSPLLSLIQDQVMGLTALGIP-----AYMLTSTTNKEVEKFIYRALDKGEGELKI 184
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEK++KSK FM+K++K + AG L+ +A+DE HCCS WGHDFRPDY+ LSILK FP
Sbjct: 185 LYVTPEKISKSKRFMSKVEKCHHAGRLSLVAVDEAHCCSQWGHDFRPDYKNLSILKIQFP 244
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP++ LTATAT+KV D+ +ML I CV + NRPNLFY+V K K +DE+ +
Sbjct: 245 TVPMIALTATATSKVQTDLIEMLHIPRCVKFVSTVNRPNLFYKVYQKSPVGKVVIDEITN 304
Query: 232 LMSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA---------------KLES 275
++ + N+SGI+Y S KECE + +ELR+RG+ YHA K +S
Sbjct: 305 FITESYPNNESGIVYCFSRKECEQVAKELRDRGVLAEHYHADMDIVAREKIHMRWSKGQS 364
Query: 276 NV---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAF 312
V ++AFG+GI+KP+VRFVIHH LSKSME +YQ S+ F
Sbjct: 365 QVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQSSMVF 404
>gi|356531519|ref|XP_003534325.1| PREDICTED: ATP-dependent DNA helicase Q-like 2-like [Glycine max]
Length = 695
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 139/340 (40%), Positives = 191/340 (56%), Gaps = 35/340 (10%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
+ W V + F ++ +R NQ IN + +D ++IM S D
Sbjct: 69 EFEWDSEADDVRLNVFGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRD 128
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKI-CLMTESSSLKLL 112
+ V+ +L + L A+ I A ++ T K +K L LK+L
Sbjct: 129 GIALVVSPLLSLIQDQVMGLTALGIP-----AYMLTSTNKGDEKFIYKTLEKGEGELKIL 183
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
YV+PEK++KSK FM+KL+K + AG L+ I+IDE HCCS WGHDFRPDY+ LSILKT FP
Sbjct: 184 YVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKSLSILKTQFPR 243
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
VPI+ LTATAT +V D+ +ML I CV + NRPNLFY V+ K + K +DE+A+
Sbjct: 244 VPIVALTATATQRVQNDLIEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKVVIDEIAEF 303
Query: 233 MSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------------- 277
+ + N+SGI+Y S KECE + +ELR RG+ YHA ++ N
Sbjct: 304 IQESYPNNESGIVYCFSRKECEQVAKELRERGISADYYHADMDVNAREKVHMRWSNNKLQ 363
Query: 278 ----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GI+KP+VRFVIHH LSKSME +YQ S G
Sbjct: 364 VIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAG 403
>gi|260783443|ref|XP_002586784.1| hypothetical protein BRAFLDRAFT_102942 [Branchiostoma floridae]
gi|229271910|gb|EEN42795.1| hypothetical protein BRAFLDRAFT_102942 [Branchiostoma floridae]
Length = 849
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 116/221 (52%), Positives = 154/221 (69%), Gaps = 18/221 (8%)
Query: 107 SSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
S LK+LYV+PEK+AKSK FM K++KM+ G AR+ IDE+HCCS WGHDFRPDY+ L +L
Sbjct: 267 SDLKMLYVTPEKVAKSKRFMAKVEKMHSVGRFARLVIDEIHCCSQWGHDFRPDYKTLGVL 326
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
K +P VPILGLTATAT+ V+ DV+ +L + C++ +A FNR NL+YEV KP++ ++ +
Sbjct: 327 KRQYPSVPILGLTATATSYVIEDVKAILSMPSCLLFRASFNRHNLYYEVLRKPSSHENVM 386
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------- 276
++L ++ RF+ QSGIIY S KE E + +L RG+R YHA L++
Sbjct: 387 EKLVQTINSRFQGQSGIIYVFSRKEAETVAGDLLKRGVRAGCYHADLDAAYRSRVHRKWL 446
Query: 277 --------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
+IAFG+GIDKP+VRFVIHH LSKSMENFYQ S
Sbjct: 447 ENTIQVVVATIAFGMGIDKPDVRFVIHHSLSKSMENFYQES 487
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG 92
TD+ WS +++S+L S F L+ FRP QL A+N +L D ++IMPTG
Sbjct: 65 TDFEWSSKLQSLLGSVFKLSKFRPLQLQAMNASLSGHDTVLIMPTG 110
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT 47
++ WS +++S+L S F L+ FRP QL A+N +L D ++IMPT
Sbjct: 66 DFEWSSKLQSLLGSVFKLSKFRPLQLQAMNASLSGHDTVLIMPT 109
>gi|449453437|ref|XP_004144464.1| PREDICTED: mediator of RNA polymerase II transcription subunit
34-like [Cucumis sativus]
Length = 738
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 137/339 (40%), Positives = 192/339 (56%), Gaps = 32/339 (9%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
++ W V + F ++ +R NQ +N + +D ++IM S D
Sbjct: 71 SFKWDSEADDVKLNIFGISSYRANQREIVNAVMSGRDVLVIMAAGGGKSLCYQLPALLYD 130
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLY 113
+ V+ +L + LAA+ I+ + KL+ K L S+K+LY
Sbjct: 131 GIALVVSPLLSLIQDQVMGLAALGISASMLTSATSKEDEKLIYKN---LEKGEGSMKILY 187
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
V+PEK++KSK FM+KL+K Y AG L+ IAIDE HCCS WGHDFRPDY+ L ILKT FP+
Sbjct: 188 VTPEKVSKSKRFMSKLEKCYHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKTQFPNA 247
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
P++ LTATAT +V D+ +ML+I V + NRPNLFY VR K + K +D++A+ +
Sbjct: 248 PVIALTATATQRVQNDLVEMLRIPKYVKFVSTVNRPNLFYMVREKSSVSKVVIDQIAEFI 307
Query: 234 SRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------- 277
+ N+SGIIY S KECE + +ELR RG+ YHA ++S
Sbjct: 308 QESYPNNESGIIYCFSRKECEQVAKELRLRGISADHYHADMDSVAREKVHMRWSNSRLQV 367
Query: 278 ---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GI+KP+VRFVIHH LSKSME +YQ S G
Sbjct: 368 IVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAG 406
>gi|302811147|ref|XP_002987263.1| hypothetical protein SELMODRAFT_125799 [Selaginella moellendorffii]
gi|300144898|gb|EFJ11578.1| hypothetical protein SELMODRAFT_125799 [Selaginella moellendorffii]
Length = 711
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 199/337 (59%), Gaps = 28/337 (8%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
N+ W + ++L + F ++ FR NQ +N + K+ +++M S ++ ++L+
Sbjct: 58 NFEWDNEASNLLLNVFGISTFRRNQREIVNALMSNKNVVVVMAAGGGKSLCYQLPALLRP 117
Query: 62 KFNLTDFRP----NQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE--SSSLKLLYVS 115
L P Q + +A L A ++ T ++K+I + E +L++LYV+
Sbjct: 118 GIALV-VSPLLSLIQDQVMGLAALGVSAAMLTSTTSKEEEKEIYRVLEKGDGNLRILYVT 176
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PEK+AKSK FM+KL+K +AG L+ +AIDE HCCS WGHDFRPDY+ L ILK FP VP+
Sbjct: 177 PEKIAKSKRFMSKLEKCNRAGRLSLVAIDEAHCCSQWGHDFRPDYKNLGILKKQFPKVPM 236
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATAT +V D+Q+MLQI C + NRPNLFYEVR K D ++++A +
Sbjct: 237 IALTATATGRVQRDLQEMLQILPCERFTSSVNRPNLFYEVRDKKQVAADVIEDIALFIKE 296
Query: 236 RF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------- 277
+ N+SGI+Y S KECE + + LR R + + YHA ++S +
Sbjct: 297 TYPSNESGIVYCFSRKECEQVADALRKRQISAAHYHADMDSGLRTNVHRRWSSNQLQVIV 356
Query: 278 -SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GI+KP+VRFVIHH LSKS+E +YQ S G
Sbjct: 357 GTVAFGMGINKPDVRFVIHHTLSKSLETYYQESGRAG 393
>gi|432943336|ref|XP_004083165.1| PREDICTED: ATP-dependent DNA helicase Q1-like [Oryzias latipes]
Length = 802
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 133/335 (39%), Positives = 190/335 (56%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
++PWS V L++ F+L+ FRP QL AIN+ + +D ++MPTG+
Sbjct: 85 EFPWSAAVDQHLRTSFHLSAFRPLQLRAINLTMEGRDVFLVMPTGRGKSLCYQLPAVCSE 144
Query: 94 ------------------LLKKKKI-------------------CLMTESSSLKLLYVSP 116
LL+ ++ L + KL+YV+P
Sbjct: 145 GFTLVVSPLVSLMEDQLLLLRSLQVPAAALNASSGKEHTKTVLAALTDPKAPFKLVYVTP 204
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK M++L+K YKA L+R+A+DEVHCCS WGHDFRPDY+ L ILK FP VP+L
Sbjct: 205 EKIAKSKLLMSRLEKAYKAKLLSRMAVDEVHCCSQWGHDFRPDYKLLGILKRQFPSVPLL 264
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT+ V+ D +K+L + V + A FNR NL+YEVR+K + L +++ L+ R
Sbjct: 265 GLTATATSSVLQDCRKILCVPQPVTLTASFNRANLYYEVRVKDSDSDLSLSDISSLIKNR 324
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE------------SN------VS 278
++ QSGI+Y S K+ E + L+ G++ YHA ++ SN +
Sbjct: 325 YKEQSGIVYVFSQKDAESVSSALQKSGIQAYPYHANMDPEDKSRVHRKWTSNKIQVVVAT 384
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 385 VAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 419
>gi|402587392|gb|EJW81327.1| ATP-dependent DNA helicase, partial [Wuchereria bancrofti]
Length = 396
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 134/329 (40%), Positives = 183/329 (55%), Gaps = 69/329 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL---------- 95
++ W R +L F L+DFRP Q A IN L ++D +++M T GK L
Sbjct: 68 EFRWMKDCRHILHDVFKLSDFRPLQRAVINAVLSREDCLVVMSTGSGKSLCYQLPAVVMK 127
Query: 96 ---------------------------------------KKKKICLMTESSSLKLLYVSP 116
+ + L +SL+LLYV+P
Sbjct: 128 GIVLVVSPLVALIEDQLHQLRKLGIDAATLNQSTAKEEVNRIQTALTDSKASLRLLYVTP 187
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EKLAKSK M +L+K + L IA+DEVHCCS WGHDFRPD+++L++LK F VP++
Sbjct: 188 EKLAKSKRIMNRLEKCNEMKRLKLIAVDEVHCCSQWGHDFRPDFKFLNVLKRQFQAVPLI 247
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ DV+ ML I VV +A FNRPNL Y V KP++ + ++ L +L+ R
Sbjct: 248 GLTATATADVIDDVKNMLGIPAAVVFRAGFNRPNLHYSVCQKPSSDAEFVNILVELIKTR 307
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
F QSGIIY S KECE+L + LR +G++ S YHA L+++ +
Sbjct: 308 FAGQSGIIYCFSRKECEELTKSLRAKGVKASHYHAFLDADKRNITHEKWLNGGINVIVAT 367
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+AFG+GIDKPNVR+VIHH L KS+EN+YQ
Sbjct: 368 VAFGMGIDKPNVRYVIHHSLPKSLENYYQ 396
>gi|449516333|ref|XP_004165201.1| PREDICTED: mediator of RNA polymerase II transcription subunit
34-like [Cucumis sativus]
Length = 586
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 137/339 (40%), Positives = 192/339 (56%), Gaps = 32/339 (9%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
++ W V + F ++ +R NQ +N + +D ++IM S D
Sbjct: 71 SFKWDSEADDVKLNIFGISSYRANQREIVNAVMSGRDVLVIMAAGGGKSLCYQLPALLYD 130
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLY 113
+ V+ +L + LAA+ I+ + KL+ K L S+K+LY
Sbjct: 131 GIALVVSPLLSLIQDQVMGLAALGISASMLTSATSKEDEKLIYKN---LEKGEGSMKILY 187
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
V+PEK++KSK FM+KL+K Y AG L+ IAIDE HCCS WGHDFRPDY+ L ILKT FP+
Sbjct: 188 VTPEKVSKSKRFMSKLEKCYHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKTQFPNA 247
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
P++ LTATAT +V D+ +ML+I V + NRPNLFY VR K + K +D++A+ +
Sbjct: 248 PVIALTATATQRVQNDLVEMLRIPKYVKFVSTVNRPNLFYMVREKSSVSKVVIDQIAEFI 307
Query: 234 SRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------- 277
+ N+SGIIY S KECE + +ELR RG+ YHA ++S
Sbjct: 308 QESYPNNESGIIYCFSRKECEQVAKELRLRGISADHYHADMDSVAREKVHMRWSNSRLQV 367
Query: 278 ---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GI+KP+VRFVIHH LSKSME +YQ S G
Sbjct: 368 IVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAG 406
>gi|357113938|ref|XP_003558758.1| PREDICTED: ATP-dependent DNA helicase Q-like 2-like [Brachypodium
distachyon]
Length = 704
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 191/338 (56%), Gaps = 32/338 (9%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DR 54
+ W + + + F ++ +R NQ IN + KD ++IM S D
Sbjct: 71 FSWDSQADDIRFNVFGISSYRSNQREIINSIMSGKDVLVIMAAGGGKSLCYQLPAVLRDG 130
Query: 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYV 114
+ V+ +L + L A+ I + KL+ K L LK+LYV
Sbjct: 131 IALVVSPLLSLIQDQVMGLTALGIPAYMLTSTTNKEVEKLIYK---ALEKGEGELKILYV 187
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PEK++KSK FM+KL+K + AG L+ +AIDE HCCS WGHDFRPDY+ L ILK FP VP
Sbjct: 188 TPEKISKSKRFMSKLEKCHHAGRLSLVAIDEAHCCSQWGHDFRPDYKNLGILKIQFPSVP 247
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
++ LTATAT+KV +D+ +ML I CV + NRPNL+Y+V K + K +DE+A+ ++
Sbjct: 248 MIALTATATSKVQMDLIEMLHIPRCVKFVSTVNRPNLYYKVYEKSSVGKVVIDEIANFIT 307
Query: 235 RRFRN-QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---------------- 277
+ N +SGI+Y S KECE + +ELR RG+ YHA ++S
Sbjct: 308 ESYPNKESGIVYCFSRKECEQVAKELRERGIAADYYHADMDSVAREKVHMRWSKSKSQVI 367
Query: 278 --SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GI+KP+VRFV+HH LSKSME +YQ S G
Sbjct: 368 VGTVAFGMGINKPDVRFVVHHSLSKSMETYYQESGRAG 405
>gi|302789379|ref|XP_002976458.1| hypothetical protein SELMODRAFT_105080 [Selaginella moellendorffii]
gi|300156088|gb|EFJ22718.1| hypothetical protein SELMODRAFT_105080 [Selaginella moellendorffii]
Length = 711
Score = 243 bits (620), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 133/337 (39%), Positives = 199/337 (59%), Gaps = 28/337 (8%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
N+ W + ++L + F ++ +R NQ +N + K+ +++M S ++ ++L+
Sbjct: 58 NFEWDNEASNLLLNVFGISTYRRNQREIVNALMSNKNVVVVMAAGGGKSLCYQLPALLRP 117
Query: 62 KFNLTDFRP----NQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE--SSSLKLLYVS 115
L P Q + +A L A ++ T ++K+I + E +L++LYV+
Sbjct: 118 GIALV-VSPLLSLIQDQVMGLAALGVSAAMLTSTTSKEEEKEIYRVLEKGDGNLRILYVT 176
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PEK+AKSK FM+KL+K +AG L+ +AIDE HCCS WGHDFRPDY+ L ILK FP VP+
Sbjct: 177 PEKIAKSKRFMSKLEKCNRAGRLSLVAIDEAHCCSQWGHDFRPDYKNLGILKKQFPKVPM 236
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATAT +V D+Q+MLQI C + NRPNLFYEVR K D ++++A +
Sbjct: 237 IALTATATGRVQRDLQEMLQILPCERFTSSVNRPNLFYEVRDKKQVAADVIEDIALFIKE 296
Query: 236 RF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------- 277
+ N+SGI+Y S KECE + + LR R + + YHA ++S +
Sbjct: 297 TYPSNESGIVYCFSRKECEQVADALRKRQISAAHYHADMDSGLRTNVHRRWSSNQLQVIV 356
Query: 278 -SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GI+KP+VRFVIHH LSKS+E +YQ S G
Sbjct: 357 GTVAFGMGINKPDVRFVIHHTLSKSLETYYQESGRAG 393
>gi|198427281|ref|XP_002131591.1| PREDICTED: similar to RECQL1 protein [Ciona intestinalis]
Length = 697
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 190/336 (56%), Gaps = 39/336 (11%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSD 53
N+PWS + L+ F + F P QL AIN + K D ++IM T S
Sbjct: 148 NFPWSAELDKTLQDVFQIKHFHPVQLQAINSTMSKCDVLLIMSTGGGKSLCFQLPAIISK 207
Query: 54 RVRSVLKSKFNLTDFRPNQLA--AINIALLKKDAII--IMPTGKLLKKKKICLMTESSSL 109
+ V+ +L + + L I +LK D+ + +M +K + + +
Sbjct: 208 GITLVVTPLVSLMEDQVLNLKQYGIKAHMLKADSSMDDVMEVYDSMK-------SPNPQV 260
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169
KL+YV+PEK++KSK FM+ L K YK+G L+RIAIDEVHC S WG+DFRPDY+ L ILK +
Sbjct: 261 KLVYVTPEKISKSKQFMSHLDKCYKSGNLSRIAIDEVHCVSQWGNDFRPDYKMLGILKRL 320
Query: 170 FPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDEL 229
+P PI+GLTAT+T KV D +++L I DC+V + P R NLFYEVR KP + + ++
Sbjct: 321 YPSTPIIGLTATSTNKVTFDTKQLLNIPDCLVFRTPLVRKNLFYEVRPKPTTHQKVVQDI 380
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------- 276
+ F+ +SGIIY S + C D+ L G+R + YHA+ +
Sbjct: 381 VTTIQENFKGESGIIYCISCRNCTDVCNSLIKSGIRAAVYHARCSAKKKSEVHQQWLNNE 440
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KP VRFVIHH +SKS+EN++Q
Sbjct: 441 IQVICATVAFGMGINKPQVRFVIHHSISKSVENYFQ 476
>gi|293332763|ref|NP_001168975.1| uncharacterized protein LOC100382802 [Zea mays]
gi|223974195|gb|ACN31285.1| unknown [Zea mays]
Length = 710
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/339 (40%), Positives = 189/339 (55%), Gaps = 32/339 (9%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
++PW + F ++ +R NQ IN + +D ++IM S D
Sbjct: 70 SFPWDLEADDTRFNIFGISSYRSNQREIINAVMSGRDVLVIMAAGGGKSLCYQLPAVLRD 129
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLY 113
+ V+ +L + L+A+ I + K + K L LK+LY
Sbjct: 130 GIALVVSPLLSLIQDQVMGLSALGIPAYMLTSTTNKEVEKFIYK---TLDKGEGELKILY 186
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
V+PEK++KSK FM+KL+K + AG L+ IAIDE HCCS WGHDFRPDY+ L ILK FP V
Sbjct: 187 VTPEKISKSKRFMSKLEKCHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKIQFPSV 246
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
P++ LTATAT+KV +D+ +ML I C+ + NRPNLFY+V K K +DE+ +
Sbjct: 247 PMIALTATATSKVQMDLMEMLHIPRCIKFVSTVNRPNLFYKVSEKSPVGKVVIDEITKFI 306
Query: 234 SRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE---------------SNV 277
S + N+SGIIY S KECE + +ELR RG+ YHA ++ S V
Sbjct: 307 SESYPNNESGIIYCFSRKECEQVAKELRERGISADYYHADMDIVNREKIHMRWSKGKSQV 366
Query: 278 ---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GI+KP+VRFVIHH LSKSME +YQ S G
Sbjct: 367 IVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAG 405
>gi|77552739|gb|ABA95536.1| ATP-dependent DNA helicase, RecQ family protein, expressed [Oryza
sativa Japonica Group]
Length = 707
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 140/339 (41%), Positives = 190/339 (56%), Gaps = 32/339 (9%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
++ W R V + F ++ +R NQ IN + +D ++IM S D
Sbjct: 70 SFLWDSRADDVRFNVFGISSYRQNQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLHD 129
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLY 113
+ V+ +L + LAA+ I + K + K L LK+LY
Sbjct: 130 GITLVVSPLLSLIQDQVMGLAALGIQAYMLASTTNKEVEKFVYK---ALDKGEGELKILY 186
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
V+PEK++KSK FM+KL+K + AG L+ IAIDE HCCS WGHDFRPDY+ L ILK FP V
Sbjct: 187 VTPEKISKSKRFMSKLEKCHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKVQFPSV 246
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
P++ LTATAT KV +D+ +ML I CV + NRPNLFY+V K K +DE+A+ +
Sbjct: 247 PMIALTATATNKVQIDLIEMLHIPRCVKFVSTINRPNLFYKVFEKSPVGKVVIDEIANFI 306
Query: 234 SRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA-----------------KLES 275
S + N+SGI+Y S KECE + +EL RG+ YHA KL+
Sbjct: 307 SESYPNNESGIVYCFSRKECEQVAKELSERGILADYYHADMDVISREKVHMRWSKSKLQV 366
Query: 276 NV-SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
V ++AFG+GI+KP+VRFVIHH LSKSME +YQ S G
Sbjct: 367 IVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAG 405
>gi|108864717|gb|ABA95535.2| ATP-dependent DNA helicase, RecQ family protein, expressed [Oryza
sativa Japonica Group]
Length = 766
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 140/339 (41%), Positives = 190/339 (56%), Gaps = 32/339 (9%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
++ W R V + F ++ +R NQ IN + +D ++IM S D
Sbjct: 70 SFLWDSRADDVRFNVFGISSYRQNQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLHD 129
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLY 113
+ V+ +L + LAA+ I + K + K L LK+LY
Sbjct: 130 GITLVVSPLLSLIQDQVMGLAALGIQAYMLASTTNKEVEKFVYK---ALDKGEGELKILY 186
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
V+PEK++KSK FM+KL+K + AG L+ IAIDE HCCS WGHDFRPDY+ L ILK FP V
Sbjct: 187 VTPEKISKSKRFMSKLEKCHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKVQFPSV 246
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
P++ LTATAT KV +D+ +ML I CV + NRPNLFY+V K K +DE+A+ +
Sbjct: 247 PMIALTATATNKVQIDLIEMLHIPRCVKFVSTINRPNLFYKVFEKSPVGKVVIDEIANFI 306
Query: 234 SRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA-----------------KLES 275
S + N+SGI+Y S KECE + +EL RG+ YHA KL+
Sbjct: 307 SESYPNNESGIVYCFSRKECEQVAKELSERGILADYYHADMDVISREKVHMRWSKSKLQV 366
Query: 276 NV-SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
V ++AFG+GI+KP+VRFVIHH LSKSME +YQ S G
Sbjct: 367 IVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAG 405
>gi|77552741|gb|ABA95538.1| ATP-dependent DNA helicase, RecQ family protein, expressed [Oryza
sativa Japonica Group]
Length = 556
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 140/339 (41%), Positives = 190/339 (56%), Gaps = 32/339 (9%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
++ W R V + F ++ +R NQ IN + +D ++IM S D
Sbjct: 70 SFLWDSRADDVRFNVFGISSYRQNQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLHD 129
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLY 113
+ V+ +L + LAA+ I + K + K L LK+LY
Sbjct: 130 GITLVVSPLLSLIQDQVMGLAALGIQAYMLASTTNKEVEKFVYKA---LDKGEGELKILY 186
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
V+PEK++KSK FM+KL+K + AG L+ IAIDE HCCS WGHDFRPDY+ L ILK FP V
Sbjct: 187 VTPEKISKSKRFMSKLEKCHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKVQFPSV 246
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
P++ LTATAT KV +D+ +ML I CV + NRPNLFY+V K K +DE+A+ +
Sbjct: 247 PMIALTATATNKVQIDLIEMLHIPRCVKFVSTINRPNLFYKVFEKSPVGKVVIDEIANFI 306
Query: 234 SRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA-----------------KLES 275
S + N+SGI+Y S KECE + +EL RG+ YHA KL+
Sbjct: 307 SESYPNNESGIVYCFSRKECEQVAKELSERGILADYYHADMDVISREKVHMRWSKSKLQV 366
Query: 276 NV-SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
V ++AFG+GI+KP+VRFVIHH LSKSME +YQ S G
Sbjct: 367 IVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAG 405
>gi|440468642|gb|ELQ37793.1| RecQ helicase MUSN [Magnaporthe oryzae Y34]
gi|440478855|gb|ELQ59654.1| RecQ helicase MUSN [Magnaporthe oryzae P131]
Length = 1780
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 136/342 (39%), Positives = 192/342 (56%), Gaps = 37/342 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--------------DYP 50
+PWS+ VR LK F ++ FR NQL AIN L KDA ++MPT +
Sbjct: 854 HPWSNDVRKALKDHFRMSGFRHNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPAVVNNG 913
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLK 110
+ + V+ +L + + L INI + I T K + + + LK
Sbjct: 914 ATRGITIVVSPLLSLMQDQVDHLRDINIQAAQFSGDIDK-THKNMILDALNNKNPENFLK 972
Query: 111 LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170
LLYV+PE ++KS +F LQ+ Y+ LAR IDE HC S WGHDFRPDY+ L L+ MF
Sbjct: 973 LLYVTPEMISKSVTFTNALQRTYRNKKLARFVIDEAHCVSQWGHDFRPDYKALGELRRMF 1032
Query: 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA 230
P+VP++ LTATAT V++DV+ L I+ C V FNRPNL+Y+VR K K+ L +A
Sbjct: 1033 PNVPVMALTATATKNVIVDVKSNLGIDGCEVFSQSFNRPNLYYDVRPK---GKNLLQSIA 1089
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREEL-RNRGLRVSAYHAKLESN------------- 276
+L+ R +Q+GIIYT + K E++ ++L + G+ AYHA +E++
Sbjct: 1090 ELIQERHADQTGIIYTLARKSSENIAKKLVQTYGISAEAYHAGMETDKKTDIQRKWQRGT 1149
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L KS+E +YQ + G
Sbjct: 1150 IKVVVATIAFGMGIDKPDVRFVIHQSLPKSLEGYYQETGRAG 1191
>gi|389625891|ref|XP_003710599.1| RecQ helicase MUSN [Magnaporthe oryzae 70-15]
gi|351650128|gb|EHA57987.1| RecQ helicase MUSN [Magnaporthe oryzae 70-15]
Length = 1780
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 136/342 (39%), Positives = 192/342 (56%), Gaps = 37/342 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--------------DYP 50
+PWS+ VR LK F ++ FR NQL AIN L KDA ++MPT +
Sbjct: 854 HPWSNDVRKALKDHFRMSGFRHNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPAVVNNG 913
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLK 110
+ + V+ +L + + L INI + I T K + + + LK
Sbjct: 914 ATRGITIVVSPLLSLMQDQVDHLRDINIQAAQFSGDIDK-THKNMILDALNNKNPENFLK 972
Query: 111 LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170
LLYV+PE ++KS +F LQ+ Y+ LAR IDE HC S WGHDFRPDY+ L L+ MF
Sbjct: 973 LLYVTPEMISKSVTFTNALQRTYRNKKLARFVIDEAHCVSQWGHDFRPDYKALGELRRMF 1032
Query: 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA 230
P+VP++ LTATAT V++DV+ L I+ C V FNRPNL+Y+VR K K+ L +A
Sbjct: 1033 PNVPVMALTATATKNVIVDVKSNLGIDGCEVFSQSFNRPNLYYDVRPK---GKNLLQSIA 1089
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREEL-RNRGLRVSAYHAKLESN------------- 276
+L+ R +Q+GIIYT + K E++ ++L + G+ AYHA +E++
Sbjct: 1090 ELIQERHADQTGIIYTLARKSSENIAKKLVQTYGISAEAYHAGMETDKKTDIQRKWQRGT 1149
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L KS+E +YQ + G
Sbjct: 1150 IKVVVATIAFGMGIDKPDVRFVIHQSLPKSLEGYYQETGRAG 1191
>gi|168029873|ref|XP_001767449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681345|gb|EDQ67773.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 655
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 135/341 (39%), Positives = 192/341 (56%), Gaps = 36/341 (10%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS 57
++ W +R + + F + +R NQ IN + +D I+IM Y +R+
Sbjct: 65 SFEWDNRAADIRLNLFGIKSYRQNQHEIINAVMSGRDVIVIMAAGGGKSLCYQLPAMLRT 124
Query: 58 ----VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKI--CLMTESSSLKL 111
V+ +L + L A+ I+ A ++ T ++K I L LK+
Sbjct: 125 GTALVISPLLSLIQDQVMGLTALGIS-----ASMLTSTTTKDEEKSIYKSLEKGEGDLKI 179
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEK+AKSK F++KL+K G L+ IAIDE HCCS WGHDFRPDY+ L ILK FP
Sbjct: 180 LYVTPEKVAKSKRFVSKLEKCNHGGRLSLIAIDEAHCCSQWGHDFRPDYKQLGILKKQFP 239
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP++ LTATAT +V D+++MLQI C + NRPNLFYEVR K A +D++A
Sbjct: 240 RVPMIALTATATERVQTDLREMLQITRCEKFVSTVNRPNLFYEVREKKANGSAAIDDIAS 299
Query: 232 LMSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------- 277
+ ++ + +SGI+Y S KECE + ELR RG+ + YHA ++
Sbjct: 300 FILDKYSKKESGIVYCFSRKECEQVAAELRKRGISAAHYHADMKPETRSSVHMRWSTNKL 359
Query: 278 -----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GI+KP+VRFVIHH LSKS+E +YQ S G
Sbjct: 360 QVIVGTVAFGMGINKPDVRFVIHHSLSKSLETYYQESGRAG 400
>gi|425778070|gb|EKV16215.1| RecQ family helicase MusN [Penicillium digitatum Pd1]
gi|425780607|gb|EKV18613.1| RecQ family helicase MusN [Penicillium digitatum PHI26]
Length = 1426
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 140/351 (39%), Positives = 197/351 (56%), Gaps = 41/351 (11%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
N+PWS VR VLK +F+L FRPNQL AI+ L KD I+MPT S ++ SV+
Sbjct: 554 NHPWSQEVRKVLKDRFHLRGFRPNQLEAIDATLAGKDTFILMPTGGGKSLCYQLPSVVTG 613
Query: 62 KFN---------LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE-----SS 107
L +Q++ ++ LK A +I G ++K +M++
Sbjct: 614 GSTTGVTIVISPLLSLMEDQVS--HLQKLKVKAFMI--NGDTNPEEKSWIMSQLTNAGGE 669
Query: 108 SLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
+++LY++PE L+KS++ + L+K++ LAR+ IDE HC S WGHDFRPDY+ L ++
Sbjct: 670 GMEVLYITPEMLSKSQALIRALEKLHGRNRLARLVIDEAHCVSQWGHDFRPDYKELGEVR 729
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLD 227
FP VP++ LTATAT V +DV L+I DC V FNRPNL YEVR K + L
Sbjct: 730 ARFPGVPVMALTATATENVKVDVMHNLKITDCEVFLQSFNRPNLTYEVRSK-GKNDEVLA 788
Query: 228 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN---------- 276
+A+ +S +RNQ GIIY S K CE E+LR + L+ AYHA + +
Sbjct: 789 SMAETISSSYRNQCGIIYCLSRKTCEKTAEDLRTKYRLKAQAYHAGMSATAKTEAQRNWQ 848
Query: 277 --------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDK +VRFV+HH + KS+E +YQ + G GK S
Sbjct: 849 MGRVHIIVATIAFGMGIDKADVRFVMHHSIPKSLEGYYQETGRAGRDGKRS 899
>gi|339243055|ref|XP_003377453.1| ATP-dependent DNA helicase Q1 [Trichinella spiralis]
gi|316973743|gb|EFV57302.1| ATP-dependent DNA helicase Q1 [Trichinella spiralis]
Length = 605
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 178/336 (52%), Gaps = 71/336 (21%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---------------- 92
+ WS + LKS F + FRP QL+A+N L +D ++ M TG
Sbjct: 68 FSWSSELSEKLKSIFGMNSFRPLQLSAMNAILSGRDVLLTMSTGGGKSLTYQLPAVLGNA 127
Query: 93 -----------KLLKKKKICLMTES--------------------------SSLKLLYVS 115
L++ + I L T +LLYV+
Sbjct: 128 SQFTLVISPLVSLMEDQVISLNTRGIEAVLLYQHTPPEEMKRILAEMNSPGCKFRLLYVT 187
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE+LAKSK FM KL+K Y+AG L IAIDEVHCCS WGHDFRPDY++L +L+ FPD PI
Sbjct: 188 PERLAKSKRFMAKLEKAYQAGLLKLIAIDEVHCCSQWGHDFRPDYKFLGVLRRQFPDTPI 247
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
LGLTATAT V+ D++++L I + +A FNRPNLFY+V+ KP ++ L + L+
Sbjct: 248 LGLTATATVAVLQDIKEILNIPMALEFRASFNRPNLFYQVQQKPDRPEELLQIVCKLLKG 307
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
+F QSGIIY S K+ E + LR G++ YHA ++ N
Sbjct: 308 QFSGQSGIIYCFSKKDSETFAQNLRTNGVKAEHYHADMDPNERGMVHRKWLSNKCQVIVA 367
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDK +VR VIH L KS+EN+YQ S G
Sbjct: 368 TVAFGMGIDKADVRVVIHLALPKSVENYYQESGRAG 403
>gi|145324100|ref|NP_001077639.1| ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana]
gi|332193226|gb|AEE31347.1| ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana]
Length = 580
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/224 (52%), Positives = 152/224 (67%), Gaps = 19/224 (8%)
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
LK+LYV+PEK++KSK FM+KL+K + AG L+ I+IDE HCCS WGHDFRPDY+ LSILKT
Sbjct: 57 LKILYVTPEKVSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKT 116
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
FP VP++ LTATAT KV D+ +ML I CV + NRPNLFY VR K A K +DE
Sbjct: 117 QFPKVPMVALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDE 176
Query: 229 LADLMSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---------- 277
+A+ + + N+SGI+Y S KECE + +LR RG+ YHA +++N+
Sbjct: 177 IAEFIRESYSNNESGIVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSK 236
Query: 278 --------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GI+KP+VRFVIHH LSKSME +YQ S G
Sbjct: 237 NKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAG 280
>gi|302890734|ref|XP_003044250.1| hypothetical protein NECHADRAFT_64925 [Nectria haematococca mpVI
77-13-4]
gi|256725172|gb|EEU38537.1| hypothetical protein NECHADRAFT_64925 [Nectria haematococca mpVI
77-13-4]
Length = 1302
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 132/353 (37%), Positives = 191/353 (54%), Gaps = 56/353 (15%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
N+PWS VR +LK +F + +FR NQL AIN L KDA ++MPT S ++ +V+K+
Sbjct: 685 NHPWSPEVRRMLKDRFGMEEFRHNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAVVKT 744
Query: 62 KFNLTDFRPNQLAAINIAL-----LKKDAIIIMPTGKLLKKKKICLMTESSS-------- 108
+ + I + L +D + M K L + + E S+
Sbjct: 745 ---------GKTQGVTIVVSPLLSLMQDQVDHM---KRLGIQAVAFHGECSAEYKRQVMA 792
Query: 109 ----------LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRP 158
++LLYV+PE + KS +F +Q ++ G LARI IDE HC S WGHDFRP
Sbjct: 793 AFEEGIPEHHVELLYVTPEMVGKSTAFNNGMQTLHGRGKLARIVIDEAHCISQWGHDFRP 852
Query: 159 DYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIK 218
DY+ L ++ +P VP++ LTATAT V+ D++ L ++ C FNRPNL+YEVR K
Sbjct: 853 DYKALGQVRQRYPGVPVMALTATATQNVIADIRHNLGMDRCQTFSQSFNRPNLYYEVRPK 912
Query: 219 PAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN-- 276
K +D +A L+ ++RNQSGI+YT S K E + E L +G+ YHA ++
Sbjct: 913 TTNNK-TIDSIASLIRLQYRNQSGIVYTISRKNAEKVAESLTKQGIMARHYHAHVDPREK 971
Query: 277 ----------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFV+HH L KS+E +YQ + G
Sbjct: 972 VEVQDGWQRGQVKVVVATVAFGMGIDKPDVRFVMHHGLPKSLEGYYQETGRAG 1024
>gi|302883319|ref|XP_003040560.1| hypothetical protein NECHADRAFT_88354 [Nectria haematococca mpVI
77-13-4]
gi|256721447|gb|EEU34847.1| hypothetical protein NECHADRAFT_88354 [Nectria haematococca mpVI
77-13-4]
Length = 838
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 128/344 (37%), Positives = 190/344 (55%), Gaps = 40/344 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS------------ 52
+PWS V+ +LK +F + FR NQL AIN L KDA ++MPT S
Sbjct: 61 HPWSPEVQRMLKDRFRMKRFRHNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAVVKTG 120
Query: 53 --DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS-- 108
V V+ +L + + + ++ I + + K++ + E S
Sbjct: 121 KTQGVTIVVSPLLSLMQDQVDHMKSLGIQAVAFNG----ECSAEYKRQVMTAFKERSPED 176
Query: 109 -LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
++LLYV+PE ++K+ +F ++ ++ G LARI IDE HC S WGHDFRPDY+ L ++
Sbjct: 177 YIELLYVTPEMVSKNITFNNGMRTLHDKGKLARIVIDEAHCVSQWGHDFRPDYKTLGQVR 236
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLD 227
+P VP++ LTATAT V++D++ L +++C FNRPNL+YEVR K K C+D
Sbjct: 237 QRYPGVPVMALTATATQNVIVDIRHNLGMDNCQTFSQSFNRPNLYYEVRGKTTNAK-CMD 295
Query: 228 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------- 276
E+A L+ ++ NQSGI+YT S K E + E L ++G+ YHA ++
Sbjct: 296 EIASLIKSKYANQSGIVYTVSRKNAEKVAESLSDQGITARHYHAGVDPQEKAEVQIAWQQ 355
Query: 277 -------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIHH L KS+E +YQ + G
Sbjct: 356 GQIKIIVATIAFGMGIDKPDVRFVIHHGLPKSLEGYYQETGRAG 399
>gi|358342600|dbj|GAA27215.2| ATP-dependent DNA helicase Q1, partial [Clonorchis sinensis]
Length = 537
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 123/257 (47%), Positives = 161/257 (62%), Gaps = 28/257 (10%)
Query: 77 NIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAG 136
N L ++ I+ GK KK S SL+LLYV+PEKLAKSK + +L+ Y G
Sbjct: 61 NTPLTEQKEILDSLVGKSTKK--------SISLRLLYVTPEKLAKSKRLLNRLEAAYSKG 112
Query: 137 CLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKM--L 194
L RIAIDEVHC S WGHDFRPDYQ+L +L+ FP VPILG+TATA+ V++DVQ M L
Sbjct: 113 LLGRIAIDEVHCLSQWGHDFRPDYQFLHVLRRQFPTVPILGITATASGNVIVDVQSMLGL 172
Query: 195 QIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECED 254
Q + C+V+++ +NR NL+YEVR K + +L L+ R+ QSGIIY S K+ ED
Sbjct: 173 QPDKCLVVRSCYNRKNLYYEVRTTCGPPKSAVQQLYLLIQNRYCGQSGIIYCFSQKDTED 232
Query: 255 LREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDKPNVRFVIHH 296
+ ELR GLRV+ YHA ++ N ++AFG+GIDKP+VRFV+H
Sbjct: 233 VAGELRRMGLRVAHYHANMDGNARARVHTDWFTGKILIIVATVAFGMGIDKPDVRFVLHF 292
Query: 297 CLSKSMENFYQVSIAFG 313
SKS+EN+YQ S G
Sbjct: 293 SASKSLENYYQESGRAG 309
>gi|307105709|gb|EFN53957.1| hypothetical protein CHLNCDRAFT_25381, partial [Chlorella
variabilis]
Length = 498
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 133/338 (39%), Positives = 183/338 (54%), Gaps = 43/338 (12%)
Query: 2 LPNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--------- 52
L + W RV+ +L F L FRP Q IN L +D + +MP+ S
Sbjct: 87 LGTFAWDGRVQQLLGDVFGLRSFRPLQREVINATLQGRDVLCLMPSGGGKSLCYQLPALL 146
Query: 53 ---------DRVRSVLKSK-FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICL 102
+ S+++ + L++ Q AA+ K++A I K + L
Sbjct: 147 SGSGLTLVVSPLLSLIQDQVLGLSEL-GVQAAALTSLTSKEEAASISKQAGTGSKAAVSL 205
Query: 103 MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQY 162
L+LLY +PEK+A SK F TKL+K+YKAG L RIA+DE HCCS WG+DFRPDY+
Sbjct: 206 ----GGLRLLYCTPEKVASSKRFFTKLEKVYKAGRLTRIAVDEAHCCSQWGNDFRPDYKK 261
Query: 163 LSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQ 222
L ILK FPD P++ LTATAT V D++ +L+IE C + K+ NRPNLFYEVR KPA +
Sbjct: 262 LGILKQQFPDTPLIALTATATQAVCQDLRTILKIEGCELFKSSINRPNLFYEVRQKPAKE 321
Query: 223 KDCLDELADLMSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----- 276
K+ + E+A + + SGIIY + K+ E L +ELR G+ YHA +E
Sbjct: 322 KELVAEMAAWIQGNYPAGDSGIIYVLTRKDAESLADELRGAGVSCQGYHADMEPARRERV 381
Query: 277 -------------VSIAFGLGIDKPNVRFVIHHCLSKS 301
+IAFG+GI+ P+VRFVIHH L +
Sbjct: 382 HLQWSQGRVQVIVATIAFGMGINNPHVRFVIHHTLRQG 419
>gi|322699139|gb|EFY90903.1| QDE3 protein [Metarhizium acridum CQMa 102]
Length = 1698
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 126/344 (36%), Positives = 191/344 (55%), Gaps = 40/344 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
+PWS V+ +LK +F + FR NQL AIN L KDA ++MPT Y VR+
Sbjct: 819 HPWSPEVQKMLKDRFRMKGFRQNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAVVRTG 878
Query: 58 -------VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS-- 108
V+ +L + + + A+ I + + K++ + E S
Sbjct: 879 KTRGVTIVVSPLLSLMQDQVDHMKALGIQAVAFNGGC----SAEYKRQIMSAFNERSPEH 934
Query: 109 -LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
++LLYV+PE ++ + +F +Q +Y+ G AR+ IDE HC S WGHDFRPDY+ L ++
Sbjct: 935 FIELLYVTPEMVSMNPAFNNAMQTLYQRGKFARLVIDEAHCVSQWGHDFRPDYKSLGQVR 994
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLD 227
FP+VPI+ LTATAT V++D++ L + +C V FNRPNL+YEVR K + + +
Sbjct: 995 MKFPEVPIMALTATATQNVIVDIKHNLNMANCQVFSQSFNRPNLYYEVRTK-TSNSNATE 1053
Query: 228 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------- 276
+A L++ ++RN +GI+YT S K+ E++ +L G+ YHA ++
Sbjct: 1054 SIASLINAKYRNITGIVYTISRKQAEEVARKLAGHGIAARHYHAAIDPQEKVEVQTSWQK 1113
Query: 277 -------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKPNVRFV+HH L KS+E +YQ + G
Sbjct: 1114 GDIKVVVATIAFGMGIDKPNVRFVMHHGLPKSLEGYYQETGRAG 1157
>gi|408399479|gb|EKJ78580.1| hypothetical protein FPSE_01246 [Fusarium pseudograminearum CS3096]
Length = 1673
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 187/344 (54%), Gaps = 40/344 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS-----------D 53
YPWS V+ +LK +F + FR NQL AIN L KDA ++MPT S
Sbjct: 815 YPWSPEVQRMLKDRFRMKGFRCNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAVVKTG 874
Query: 54 RVRS---VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS-- 108
+ R V+ +L + + + A+ I + + K++ + E S
Sbjct: 875 KTRGVTIVVSPLLSLMQDQVDHMKALGIQAVAFNGEC----SAEYKRQVMSAFNERSPEH 930
Query: 109 -LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
L+LLYV+PE ++K+ +F LQ +++ G AR+ IDE HC S WGHDFRPDY+ L ++
Sbjct: 931 FLELLYVTPEMVSKNANFNNGLQTLHRKGKFARLVIDEAHCVSQWGHDFRPDYKILGQVR 990
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLD 227
+P VP++ LTATAT V++D++ L ++DC FNRPNL+YEVR K +K ++
Sbjct: 991 QKYPGVPVMALTATATKNVIVDIRHNLGMDDCQTFSQSFNRPNLYYEVRPKSTGEK-TIE 1049
Query: 228 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------- 276
+A L+ + N+SGI+YT S K E + E L + G+ YHA +
Sbjct: 1050 SIASLIQSNYANKSGIVYTISRKSAEKVAESLSDSGITARHYHAGCDPQEKVDVQNAWQR 1109
Query: 277 -------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G
Sbjct: 1110 GQVKVVVATIAFGMGIDKPDVRFVIHHGIPKSLEGYYQETGRAG 1153
>gi|449304030|gb|EMD00038.1| hypothetical protein BAUCODRAFT_63664, partial [Baudoinia
compniacensis UAMH 10762]
Length = 533
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 138/352 (39%), Positives = 191/352 (54%), Gaps = 44/352 (12%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS------------ 52
YPWS V+ L+ +F L FR NQL AIN L KD I+MPT S
Sbjct: 15 YPWSHDVKVALRERFRLKGFRENQLQAINATLAGKDTFILMPTGGGKSLCYQLPSLITTG 74
Query: 53 --DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKI--CLMTESSS 108
V V+ +L + + L + I A ++ +K +I L +
Sbjct: 75 KTKGVTVVVSPLLSLMEDQVQHLLELGI-----QAFLVNGESTAGEKNQIREALGQRDAQ 129
Query: 109 --LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
++ LYV+PE L+K++S ++ +++Y+ LARI IDE HC S WGHDFRPDY+ L +
Sbjct: 130 EFIQCLYVTPEMLSKNESMLSIFERLYQRRQLARIVIDEAHCVSQWGHDFRPDYKLLGNV 189
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
+ FP+VP++ LTATAT V LDV L I+ C + FNRPNL+YEVR K + KD L
Sbjct: 190 RQRFPEVPVMALTATATDAVKLDVIHNLHIDSCEIFTRSFNRPNLYYEVRPKESKGKD-L 248
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREEL-RNRGLRVSAYHAKLESN--------- 276
+ +A L+ R R QSGIIY S K CED+ +L + ++ + YHA L S
Sbjct: 249 ESIATLIKERHRGQSGIIYCLSRKNCEDMAADLVKQHKVKAAHYHAGLTSEQRSKAQKQW 308
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDK +VRFVIH+ + KS+E +YQ + G GKHS
Sbjct: 309 QSGTYHVIVATIAFGMGIDKADVRFVIHNSIPKSLEGYYQETGRAGRDGKHS 360
>gi|164423365|ref|XP_964030.2| hypothetical protein NCU08598 [Neurospora crassa OR74A]
gi|157070060|gb|EAA34794.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 1955
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 130/342 (38%), Positives = 194/342 (56%), Gaps = 37/342 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
Y WS+ VR LK +F ++ FR NQL AIN L KDA ++MPT Y VRS
Sbjct: 887 YAWSNDVRKALKDRFRMSGFRQNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAVVRSG 946
Query: 58 -------VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLK 110
V+ +L + N LA + I + + +++ +K E L+
Sbjct: 947 KTRGITVVISPLLSLMLDQVNHLANLMIQAYAFNGDMNSEMRRMVFQKLDAEHPEHE-LQ 1005
Query: 111 LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170
LLYV+PE ++K+++F+ K+ +Y+ LARI IDE HC S WGHDFRPDY+ + + F
Sbjct: 1006 LLYVTPEMVSKNQTFVNKMMDLYRRKKLARIVIDEAHCVSQWGHDFRPDYKAIGEFRKRF 1065
Query: 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA 230
P VP++ LTATAT V+LDV+ L +EDC FNRPNL+YEVR+K +++ + +A
Sbjct: 1066 PGVPVMALTATATQNVILDVKHNLAMEDCQTFSQSFNRPNLYYEVRMK---EQNLIARIA 1122
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNRG-LRVSAYHAKLESN------------- 276
+L+ ++ Q+GIIYT S K E++ + L+ + ++ YHA + ++
Sbjct: 1123 ELIKEKYDGQTGIIYTLSRKSAENIAKNLQEKHRIKAKHYHASITTDEKISVQHEWQTGR 1182
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH + KS+E +YQ + G
Sbjct: 1183 VKVVVATIAFGMGIDKPDVRFVIHQHIPKSLEGYYQETGRAG 1224
>gi|6934278|gb|AAF31695.1|AF205407_1 QDE3 protein [Neurospora crassa]
Length = 1955
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 130/342 (38%), Positives = 194/342 (56%), Gaps = 37/342 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
Y WS+ VR LK +F ++ FR NQL AIN L KDA ++MPT Y VRS
Sbjct: 887 YAWSNDVRKALKDRFRMSGFRQNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAVVRSG 946
Query: 58 -------VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLK 110
V+ +L + N LA + I + + +++ +K E L+
Sbjct: 947 KTRGITVVISPLLSLMLDQVNHLANLMIQAYAFNGDMNSEMRRMVFQKLDAEHPEHE-LQ 1005
Query: 111 LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170
LLYV+PE ++K+++F+ K+ +Y+ LARI IDE HC S WGHDFRPDY+ + + F
Sbjct: 1006 LLYVTPEMVSKNQTFVNKMMDLYRRKKLARIVIDEAHCVSQWGHDFRPDYKAIGEFRKRF 1065
Query: 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA 230
P VP++ LTATAT V+LDV+ L +EDC FNRPNL+YEVR+K +++ + +A
Sbjct: 1066 PGVPVMALTATATQNVILDVKHNLAMEDCQTFSQSFNRPNLYYEVRMK---EQNLIARIA 1122
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNRG-LRVSAYHAKLESN------------- 276
+L+ ++ Q+GIIYT S K E++ + L+ + ++ YHA + ++
Sbjct: 1123 ELIKEKYDGQTGIIYTLSRKSAENIAKNLQEKHRIKAKHYHASITTDEKISVQHEWQTGR 1182
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH + KS+E +YQ + G
Sbjct: 1183 VKVVVATIAFGMGIDKPDVRFVIHQHIPKSLEGYYQETGRAG 1224
>gi|46107336|ref|XP_380727.1| hypothetical protein FG00551.1 [Gibberella zeae PH-1]
Length = 1672
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 187/344 (54%), Gaps = 40/344 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS-----------D 53
YPWS V+ +LK +F + FR NQL AIN L KDA ++MPT S
Sbjct: 814 YPWSPEVQRMLKDRFRMKGFRCNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAVVKTG 873
Query: 54 RVRS---VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS-- 108
+ R V+ +L + + + A+ I + + K++ + E S
Sbjct: 874 KTRGVTIVVSPLLSLMQDQVDHMKALGIQAVAFNGEC----SAEYKRQVMSAFNERSPEH 929
Query: 109 -LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
L+LLYV+PE ++K+ +F LQ +++ G AR+ IDE HC S WGHDFRPDY+ L ++
Sbjct: 930 FLELLYVTPEMVSKNANFNNGLQTLHRKGKFARLVIDEAHCVSQWGHDFRPDYKILGQVR 989
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLD 227
+P VP++ LTATAT V++D++ L ++DC FNRPNL+YEVR K +K ++
Sbjct: 990 QKYPGVPVMALTATATKNVIVDIRHNLGMDDCQTFSQSFNRPNLYYEVRPKSTGEK-TIE 1048
Query: 228 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------- 276
+A L+ + N+SGI+YT S K E + E L + G+ YHA +
Sbjct: 1049 SIASLIQSNYANKSGIVYTISRKSAEKVAESLSDSGITARHYHAGCDPQEKVDVQNAWQR 1108
Query: 277 -------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G
Sbjct: 1109 GQVKVVVATIAFGMGIDKPDVRFVIHHGIPKSLEGYYQETGRAG 1152
>gi|342879842|gb|EGU81076.1| hypothetical protein FOXB_08424 [Fusarium oxysporum Fo5176]
Length = 1668
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 189/344 (54%), Gaps = 40/344 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS-----------D 53
YPWS V+ +LK +F + FR NQL AIN L +DA ++MPT S
Sbjct: 809 YPWSSEVQRMLKDRFRMKGFRCNQLEAINATLGGQDAFVLMPTGGGKSLCYQLPAVVKTG 868
Query: 54 RVRS---VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS-- 108
+ R V+ +L + + + A+ I + + K++ + E S
Sbjct: 869 KTRGVTIVVSPLLSLMQDQVDHMKALGIQAVAFNGEC----SAEYKRQVMSAFNEKSPEH 924
Query: 109 -LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
L+LLYV+PE ++K+ +F + L+ +++ G AR+ IDE HC S WGHDFRPDY+ L ++
Sbjct: 925 FLELLYVTPEMVSKNVNFNSGLETLHRKGKFARLVIDEAHCVSQWGHDFRPDYKILGQVR 984
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLD 227
+P VP++ LTATAT V++D++ L +++C + FNRPNL+YEVR K +K +D
Sbjct: 985 QKYPGVPVMALTATATKNVIVDIRHNLGMDNCQIFSQSFNRPNLYYEVRPKTTNEK-VMD 1043
Query: 228 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------- 276
++ L+ R+ NQSGI+YT S K E + E L G+ YHA +
Sbjct: 1044 AISSLIHSRYANQSGIVYTISRKNAEKVAESLSGNGITARFYHAGCDPQEKVEVQNSWQR 1103
Query: 277 -------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIHH L KS+E +YQ + G
Sbjct: 1104 GHVKVVVATIAFGMGIDKPDVRFVIHHGLPKSLEGYYQETGRAG 1147
>gi|361131758|gb|EHL03410.1| putative ATP-dependent DNA helicase hus2/rqh1 [Glarea lozoyensis
74030]
Length = 855
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 135/346 (39%), Positives = 188/346 (54%), Gaps = 41/346 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP-----------WSD 53
+PWS V+ L+ +F L FR NQL AIN L KDA I+MPT S
Sbjct: 110 HPWSADVKKALRDRFGLRGFRQNQLEAINATLGGKDAFILMPTGGGKSLCYQLPAVVQSG 169
Query: 54 RVRS---VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE---SS 107
+ R V+ +L + + L A NI + +I T K + + E
Sbjct: 170 KTRGVTLVVSPLLSLMSDQVDHLKARNI----QACLISGDTSKEERSIVFAALEERKPEQ 225
Query: 108 SLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
++LLYV+PE +A S+ + L K+++ LARI IDE HC S WGHDFRPDY+ LS L+
Sbjct: 226 YIQLLYVTPEMVANSRKLESTLDKLHRIQRLARIVIDEAHCVSQWGHDFRPDYKSLSKLR 285
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIK--PAAQKDC 225
+ VP + LTATAT V LD L + +C K FNRPNL+YEVR K ++
Sbjct: 286 DRYHGVPFIALTATATEAVKLDCIHNLGMTNCEQYKQSFNRPNLYYEVRTKKGKGVSEEV 345
Query: 226 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES---------- 275
L +++L+ + ++N SGIIYT S K CEDL E+LR +G+R +HA +++
Sbjct: 346 LKNMSELILKDYKNMSGIIYTLSRKGCEDLAEKLREKGIRAHHFHASMDAVEKHQVQRDW 405
Query: 276 --------NVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDK +VRFVIHH + KS+E +YQ + G
Sbjct: 406 QAGKHQVVVATIAFGMGIDKADVRFVIHHTMPKSLEGYYQETGRAG 451
>gi|290991859|ref|XP_002678552.1| predicted protein [Naegleria gruberi]
gi|284092165|gb|EFC45808.1| predicted protein [Naegleria gruberi]
Length = 424
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 131/342 (38%), Positives = 196/342 (57%), Gaps = 36/342 (10%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--------------DY 49
++ WS +RS LK F + FR QL AIN L +D IIMPT D
Sbjct: 2 SFEWSSVLRSTLKDVFGIPSFRTLQLEAINATLSGRDVFIIMPTGGGKSLCYQLPAIIDV 61
Query: 50 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSL 109
S V V+ +L + L ++I + + T K + ++ L + + S
Sbjct: 62 GSSGGVTIVISPLLSLIQDQVMSLINLDIPAVFLTSEQDSETTKDIYRE---LGSRNPSF 118
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169
+LLYV+PEK+++S++F+ L+++++ G R+ +DE HC S+WGHDFRPDY+ L I K
Sbjct: 119 RLLYVTPEKISRSETFLNILRRLHERGLFKRVVVDEAHCVSNWGHDFRPDYRKLGIFKDE 178
Query: 170 FPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDEL 229
FPDVP++ LTATAT V D+ L+I++CV +K FNR NL+YEVR K +K E+
Sbjct: 179 FPDVPLIALTATATGIVQEDIIHQLKIKNCVSLKGSFNRTNLYYEVRKKQTLEKTA-KEI 237
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------- 276
++ +++++ NQSGIIY S K+CE + EEL G V Y++ +++
Sbjct: 238 SEFINKKYPNQSGIIYCLSKKDCEKMAEELTTLGHDVGVYNSDIKAADKQEVHEKWSRDE 297
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GI+KP+VRFVIHH L KS+E++YQ S G
Sbjct: 298 LKIIVATIAFGMGINKPDVRFVIHHSLPKSIEDYYQESGRAG 339
>gi|350295161|gb|EGZ76138.1| hypothetical protein NEUTE2DRAFT_97732 [Neurospora tetrasperma FGSC
2509]
Length = 1994
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/342 (38%), Positives = 194/342 (56%), Gaps = 37/342 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
Y WS+ VR LK +F ++ FR NQL AIN L KDA ++MPT Y VRS
Sbjct: 921 YAWSNDVRKALKDRFRMSGFRQNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAVVRSG 980
Query: 58 -------VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLK 110
V+ +L + N LA + I + + +++ +K E L+
Sbjct: 981 KTRGITVVISPLLSLMLDQVNHLANLMIQAYAFNGDMNSEMRRMVFQKLDAEHPEHE-LQ 1039
Query: 111 LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170
LLYV+PE ++K+++F+ K+ +Y+ LARI IDE HC S WGHDFRPDY+ + + F
Sbjct: 1040 LLYVTPEMVSKNQTFVNKMMDLYRRKKLARIVIDEAHCVSQWGHDFRPDYKAIGEFRKRF 1099
Query: 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA 230
P VP++ LTATAT V+LDV+ L +EDC FNRPNL+YEVR+K +++ + +A
Sbjct: 1100 PGVPVMALTATATQNVILDVKHNLAMEDCQTFSQSFNRPNLYYEVRMK---EQNLIARIA 1156
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNRG-LRVSAYHAKLESN------------- 276
+L+ ++ Q+GIIYT S K E++ + L+ + ++ YHA + ++
Sbjct: 1157 ELIKEKYDGQTGIIYTLSRKSAENIAKNLQEKHRIKAKHYHASITTDEKISVQHEWQTGQ 1216
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH + KS+E +YQ + G
Sbjct: 1217 VKVVVATIAFGMGIDKPDVRFVIHQHIPKSLEGYYQETGRAG 1258
>gi|336465540|gb|EGO53780.1| hypothetical protein NEUTE1DRAFT_93386 [Neurospora tetrasperma FGSC
2508]
Length = 2005
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/342 (38%), Positives = 194/342 (56%), Gaps = 37/342 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
Y WS+ VR LK +F ++ FR NQL AIN L KDA ++MPT Y VRS
Sbjct: 932 YAWSNDVRKALKDRFRMSGFRQNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAVVRSG 991
Query: 58 -------VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLK 110
V+ +L + N LA + I + + +++ +K E L+
Sbjct: 992 KTRGITVVISPLLSLMLDQVNHLANLMIQAYAFNGDMNSEMRRMVFQKLDAEHPEHE-LQ 1050
Query: 111 LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170
LLYV+PE ++K+++F+ K+ +Y+ LARI IDE HC S WGHDFRPDY+ + + F
Sbjct: 1051 LLYVTPEMVSKNQTFVNKMMDLYRRKKLARIVIDEAHCVSQWGHDFRPDYKAIGEFRKRF 1110
Query: 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA 230
P VP++ LTATAT V+LDV+ L +EDC FNRPNL+YEVR+K +++ + +A
Sbjct: 1111 PGVPVMALTATATQNVILDVKHNLAMEDCQTFSQSFNRPNLYYEVRMK---EQNLIARIA 1167
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNRG-LRVSAYHAKLESN------------- 276
+L+ ++ Q+GIIYT S K E++ + L+ + ++ YHA + ++
Sbjct: 1168 ELIKEKYDGQTGIIYTLSRKSAENIAKNLQEKHRIKAKHYHASITTDEKISVQHEWQTGQ 1227
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH + KS+E +YQ + G
Sbjct: 1228 VKVVVATIAFGMGIDKPDVRFVIHQHIPKSLEGYYQETGRAG 1269
>gi|391342341|ref|XP_003745479.1| PREDICTED: putative ATP-dependent DNA helicase Q1-like [Metaseiulus
occidentalis]
Length = 611
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/349 (40%), Positives = 194/349 (55%), Gaps = 50/349 (14%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKF 63
++PWS +RS++ F + FR +Q AAIN L KD I+IMPT +S++ +
Sbjct: 65 DFPWSGPIRSIIADTFKIPAFRGSQEAAINCILSGKDCIVIMPTAAG-----KSLI---Y 116
Query: 64 NLTDFRPNQLAAINIAL--LKKDAII-------IMPTGKLLKK----------KKICLMT 104
L+ F L + L L +D + +P G L + K++ +
Sbjct: 117 QLSSFYLQGLTLVVTPLISLMEDQVTQVSVRYPALPVGSLHSQLTREQTSATLKRMLFPS 176
Query: 105 ESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLS 164
+ LLYV+PE+LAKSK FMTKLQK ++ L IAIDEVHCCS WGHDFRPDY YL
Sbjct: 177 PAEVTLLLYVTPERLAKSKLFMTKLQKCWEMKKLKLIAIDEVHCCSQWGHDFRPDYNYLG 236
Query: 165 ILKTMFPDVPILGLTATATTKVMLDVQKMLQI-EDCVVIKAPFNRPNLFYEVRIKPAAQK 223
ILK FP VP++GLTATA+ + DV ML + +D VV++ F+RPNL Y V+
Sbjct: 237 ILKKQFPGVPLIGLTATASQSITSDVISMLNLDQDVVVLRDSFDRPNLRYSVK---NDTD 293
Query: 224 DCLDELADLMSRRFRNQSGIIYTTSIKECEDL-REELRNRGLRVSAYHAKLESN------ 276
D + +L+ + QSGIIY SI+E E + R + + G+ AYHA LE+
Sbjct: 294 DITAAIGNLIRNEYAGQSGIIYCFSIREAEQVARCLVSDFGISADAYHANLEAERRSRVH 353
Query: 277 ------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDK +VRFVIH+ + KS+EN+YQ S G
Sbjct: 354 RKWSTGSIQVVVATIAFGMGIDKGDVRFVIHYSIPKSLENYYQESGRAG 402
>gi|429855219|gb|ELA30187.1| RecQ family ATP-dependent DNA helicase [Colletotrichum
gloeosporioides Nara gc5]
Length = 1695
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 131/341 (38%), Positives = 176/341 (51%), Gaps = 79/341 (23%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---------------- 92
+PWS VR LK +F + FRPNQL AIN L KDA ++MPTG
Sbjct: 784 HPWSPDVRRALKDRFRMRGFRPNQLEAINATLAGKDAFVLMPTGGGKSLCYQLPAIINSG 843
Query: 93 -----------------------KLLKKKKICLMTESSSLK------------------L 111
L + + L E++S K L
Sbjct: 844 KTRGITIVVSPLLSLMQDQVDHMSALNIQAVSLNGETTSQKRNQIFSSFKERSPELFVQL 903
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PE L S SFM L ++ LARI IDE HC S WGHDFRPDY+ L L+ FP
Sbjct: 904 LYVTPEMLNNSPSFMKALTTLHSGKRLARIVIDEAHCVSQWGHDFRPDYKALGKLRNHFP 963
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VPI+ LTATAT V++D++ L +++C V FNRPNL YEVR K +++ + ++AD
Sbjct: 964 TVPIIALTATATQNVIVDIKHNLGMDNCEVFCQSFNRPNLTYEVRRK---ERELVHKIAD 1020
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN-------------- 276
L+ ++ Q GIIYT S K E + E+LR++ G+ YHA++
Sbjct: 1021 LIQSKYDQQCGIIYTLSRKTSEQVAEKLRDKYGILAHHYHAQMSPEDRIDVQRQWQKDRI 1080
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G
Sbjct: 1081 HVVVATIAFGMGIDKPDVRFVIHHSVPKSLEGYYQETGRAG 1121
>gi|428184545|gb|EKX53400.1| hypothetical protein GUITHDRAFT_64555, partial [Guillardia theta
CCMP2712]
Length = 513
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/324 (40%), Positives = 181/324 (55%), Gaps = 33/324 (10%)
Query: 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFNLTDF 68
FNL+ FRP QL IN L KKD +++PT S + V+ +L
Sbjct: 3 FNLSSFRPLQLEIINAFLAKKDVFVLLPTGGGKSLCYQLPAIIIPGIMVVISPLLSLMQD 62
Query: 69 RPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESS-SLKLLYVSPEKLAKSKSFMT 127
+ QL A+ + + ++ T K ++ + MT+ S LKLLYV+PE+++KS+ F++
Sbjct: 63 QVEQLRALGVECM----MLSSATSKEEMREVLGAMTKGSCKLKLLYVTPERISKSRLFLS 118
Query: 128 KLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVM 187
KL++ + ++ IDE HCCS WGHDFRPDY L IL+ FP VPI+ LTATAT KV
Sbjct: 119 KLEQAHDMQRISSFVIDEAHCCSQWGHDFRPDYLKLGILRRQFPRVPIMALTATATDKVQ 178
Query: 188 LDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTT 247
DV KML IE VV + NRPNL Y V KP A KD L + ++ + F +SGI+Y
Sbjct: 179 EDVSKMLGIERSVVFRGSVNRPNLVYRVEEKPYASKDVLTMILSVIKQNFSGKSGIVYCL 238
Query: 248 SIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDKPN 289
S ++ ED+ + L GLR YHA L +IAFG+GI+KP+
Sbjct: 239 SRRDAEDVAKFLAENGLRALPYHADLSDEYRTRVHQQWTKGIVHIMVATIAFGMGINKPD 298
Query: 290 VRFVIHHCLSKSMENFYQVSIAFG 313
VRFVIHH +SKS+ +YQ S G
Sbjct: 299 VRFVIHHSMSKSLAAYYQESGRGG 322
>gi|358387252|gb|EHK24847.1| hypothetical protein TRIVIDRAFT_212358 [Trichoderma virens Gv29-8]
Length = 1658
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 191/344 (55%), Gaps = 40/344 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--------DYPW---SD 53
+PWS V+ LK +F + FR NQL AIN L DA ++MPT P S
Sbjct: 764 HPWSADVQKTLKDRFRMKGFRQNQLEAINATLAGDDAFVLMPTGGGKSLCYQLPAVVKSG 823
Query: 54 RVRS---VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS-- 108
R R V+ +L + + + A+ I + ++ K++ + E +
Sbjct: 824 RTRGVTIVVSPLLSLMQDQVDHMKALGIQAVAFNSEC----SPEYKRQVMSAFNERNPEH 879
Query: 109 -LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
++LLYV+PE +KS FM LQ +Y++ ARI IDE HC S WGHDFRPDY+ L L+
Sbjct: 880 FIELLYVTPEMASKSPQFMNALQSLYRSRKFARIVIDEAHCVSQWGHDFRPDYKTLGQLR 939
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLD 227
+ FP+VP++ LTATAT V++D++ L + +C V FNRPNL+YEVR K ++
Sbjct: 940 SKFPEVPVMALTATATQNVIVDIKHNLGMNNCQVFSQSFNRPNLYYEVRPK-SSNPVVTQ 998
Query: 228 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------- 276
++A L++ ++ N +GI+YT S K+ ED+ ++L + G+ YHA +
Sbjct: 999 QIAALINSKYPNVTGIVYTISRKQAEDVAQKLSDNGITARHYHAAITPTEKVEVQTAWQK 1058
Query: 277 -------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VR+VIHH + KS+E +YQ + G
Sbjct: 1059 GQVKVVVATIAFGMGIDKPDVRYVIHHGIPKSLEGYYQETGRAG 1102
>gi|336265633|ref|XP_003347587.1| SGS1 protein [Sordaria macrospora k-hell]
gi|380096454|emb|CCC06502.1| putative SGS1 protein [Sordaria macrospora k-hell]
Length = 2276
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 129/342 (37%), Positives = 190/342 (55%), Gaps = 37/342 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
+PWS+ VR LK +F + FR NQL AIN L KDA ++MPT Y V+S
Sbjct: 1198 FPWSNDVRKALKDRFRMAGFRQNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAVVKSG 1257
Query: 58 -------VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLK 110
V+ +L + N L + I + + T +++ +K E L+
Sbjct: 1258 KTRGITVVISPLLSLMLDQVNHLKNLMITAYAFNGDMNAETRRMVFQKLDTPHPEHE-LQ 1316
Query: 111 LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170
LLYV+PE ++K+ F+ K+ +Y+ LARI IDE HC S WGHDFRPDY+ + + F
Sbjct: 1317 LLYVTPEMVSKNMQFVGKMGDLYQRNKLARIVIDEAHCVSQWGHDFRPDYKAIGEFRKRF 1376
Query: 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA 230
P VP++ LTATAT V+LDV+ L ++ C FNRPNL+YEVR+K +++ + +A
Sbjct: 1377 PGVPVMALTATATHNVILDVKHNLAMDTCETFSQSFNRPNLYYEVRLK---EQNLVARIA 1433
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN------------- 276
+L+ ++ Q+GIIYT S K E++ + L + G+R YHA + +
Sbjct: 1434 ELIQEKYDGQTGIIYTLSRKSAENIAKNLEEKHGIRAKHYHASITTEEKIKVQHDWQAGD 1493
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH + KS+E +YQ + G
Sbjct: 1494 VKVVVATIAFGMGIDKPDVRFVIHQHIPKSLEGYYQETGRAG 1535
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Query: 10 RVRSVLKSKFNLTDFRP---NQLAAINIALLKKDAIIIMPTD---YPWSDRVRSVLKSKF 63
R RSV+ S T +P N+ A A ++ A + MP D +PWS+ VR LK +F
Sbjct: 1155 RSRSVM-STSTATTIKPRKRNEKANTKKAKPRQ-AELSMPPDKMKFPWSNDVRKALKDRF 1212
Query: 64 NLTDFRPNQLAAINIALLKKDAIIIMPTG 92
+ FR NQL AIN L KDA ++MPTG
Sbjct: 1213 RMAGFRQNQLEAINATLGGKDAFVLMPTG 1241
>gi|340522439|gb|EGR52672.1| hypothetical protein TRIREDRAFT_102458 [Trichoderma reesei QM6a]
Length = 1690
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 189/347 (54%), Gaps = 46/347 (13%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
+PWS V+ LK +F + FR NQL AIN L DA ++MPT S ++ +V+KS
Sbjct: 790 HPWSADVQKTLKDRFRMKGFRQNQLEAINATLAGDDAFVLMPTGGGKSLCYQLPAVVKS- 848
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS-------------- 108
R + + L +D + M K L + + +E S
Sbjct: 849 ---GKTRGVTIVVSPLLSLMQDQVDHM---KALGIQAVAFNSECSPEYKRQVMSAFDERN 902
Query: 109 ----LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLS 164
++LLYV+PE +KS FM LQ +Y+ ARI IDE HC S WGHDFRPDY+ L
Sbjct: 903 PEHFIELLYVTPEMASKSPQFMNALQNLYRNKKFARIVIDEAHCVSQWGHDFRPDYKTLG 962
Query: 165 ILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKD 224
L+ FP VP++ LTATAT V++D++ L++++C V FNRPNL+YEVR K +
Sbjct: 963 QLRAKFPQVPVMALTATATQNVIVDIKHNLRMKNCQVFSQSFNRPNLYYEVRPK-GSNPV 1021
Query: 225 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN-------- 276
++A L+ ++ N +GIIYT S K+ ED+ ++L G+ YHA++ +
Sbjct: 1022 VTQQIAALIKAKYPNVTGIIYTISRKQAEDVAQKLCEHGITARHYHAQITPSEKVEVQTA 1081
Query: 277 ----------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VR+VIHH + KS+E +YQ + G
Sbjct: 1082 WQKGQIKVVVATIAFGMGIDKPDVRYVIHHGIPKSLEGYYQETGRAG 1128
>gi|402086461|gb|EJT81359.1| RecQ helicase MUSN [Gaeumannomyces graminis var. tritici R3-111a-1]
Length = 1754
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 125/342 (36%), Positives = 186/342 (54%), Gaps = 36/342 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--------------DYP 50
+ WS+ VR LK F ++ FR NQL AIN L KDA ++MPT D
Sbjct: 828 HAWSNDVRRALKDHFRMSGFRHNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPAVIDTG 887
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLK 110
+ V V+ +L + + L ++I + + ++ + ++
Sbjct: 888 NTRGVTIVVSPLLSLMQDQIDHLKVLHILARQFSGDVDKAQRDMILDALRSSKNPENMVR 947
Query: 111 LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170
LLYV+PE + KS++F+ L K+Y LARI IDE HC S WGHDFRPDY+ L ++ +
Sbjct: 948 LLYVTPEMIGKSQAFLNALDKVYSNDKLARIVIDEAHCVSQWGHDFRPDYKTLGEVRRRY 1007
Query: 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA 230
P VP++ LTATAT V++D++ L I C + FNRPNLFY++R K K+ + +A
Sbjct: 1008 PKVPVMALTATATPHVIVDIKLNLSIPQCEIFSQSFNRPNLFYDIRTK---GKNIVQTIA 1064
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN------------- 276
DL+ ++GI+YT S K E + ++LR++ G+ YHAK+E+
Sbjct: 1065 DLIQSDHEGETGIVYTLSRKSAETIAKKLRDQSGISAHHYHAKMETEEKTDVQRKWQSGQ 1124
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFV+HH L KS+E +YQ + G
Sbjct: 1125 IKVVVATIAFGMGIDKPDVRFVVHHTLPKSLEGYYQETGRAG 1166
>gi|108936937|dbj|BAE96002.1| RecQ-like helicase 2 [Oryza sativa Japonica Group]
Length = 768
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 116/222 (52%), Positives = 149/222 (67%), Gaps = 19/222 (8%)
Query: 107 SSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
LK+LYV+PEK++KSK FM+KL+K + AG L+ IAIDE HCCS WGHDFRPDY+ L IL
Sbjct: 182 GELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGIL 241
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
K FP VP++ LTATAT KV +D+ +ML I CV + NRPNLFY+V K K +
Sbjct: 242 KVQFPSVPMIALTATATNKVQIDLIEMLHIPRCVKFVSTINRPNLFYKVFEKSPVGKVVI 301
Query: 227 DELADLMSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA-------------- 271
DE+A+ +S + N+SGI+Y S KECE + +EL RG+ YHA
Sbjct: 302 DEIANFISESYPNNESGIVYCFSRKECEQVAKELSERGILADYYHADMDVISREKVHMRW 361
Query: 272 ---KLESNV-SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
KL+ V ++AFG+GI+KP+VRFVIHH LSKSME +YQ S
Sbjct: 362 SKSKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQES 403
>gi|195995715|ref|XP_002107726.1| hypothetical protein TRIADDRAFT_19930 [Trichoplax adhaerens]
gi|190588502|gb|EDV28524.1| hypothetical protein TRIADDRAFT_19930 [Trichoplax adhaerens]
Length = 605
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 128/339 (37%), Positives = 190/339 (56%), Gaps = 72/339 (21%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK----------- 93
+++ WS+++ + + F + +FR QL A+N+ L + D I+I+PT GK
Sbjct: 57 SNFTWSNQLLQISRDTFGIENFRQYQLEAMNVTLSEIDCILILPTGAGKSLCYQIPALLS 116
Query: 94 ------------LLKKKKICLM-------------TESSS---------------LKLLY 113
L++ + I L TE S LK+L+
Sbjct: 117 QGFTLVISPLVSLMQDQIISLKLKGVEGVEMLSAETEPSHTKAVYQRMLSDNEGILKILF 176
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
V+PEK+ KSK F++ L+K LARI +DEVHC S WG+DFRPDY+ L +LK FP V
Sbjct: 177 VTPEKIGKSKRFLSNLEKANNCNRLARIVVDEVHCTSQWGNDFRPDYKALGVLKRQFPSV 236
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVI-KAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
P+LGLTATA+ + D++ +L + C +I + R NL YEVR KP++ D ++++ L
Sbjct: 237 PLLGLTATASEAITQDIKTILSLSTCCMIFRGSMTRVNLIYEVRQKPSSHTDTINDMVSL 296
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE----SNV----------- 277
++ +FRNQSGIIY + KE E + +L ++G+ + YHA +E S+V
Sbjct: 297 INDKFRNQSGIIYCCTRKESETVASDLVSKGIHAAFYHADMEMSERSSVHRHWIENKVNV 356
Query: 278 ---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 357 IVGTIAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 395
>gi|115486841|ref|NP_001068564.1| Os11g0708600 [Oryza sativa Japonica Group]
gi|113645786|dbj|BAF28927.1| Os11g0708600, partial [Oryza sativa Japonica Group]
Length = 685
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 116/222 (52%), Positives = 149/222 (67%), Gaps = 19/222 (8%)
Query: 107 SSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
LK+LYV+PEK++KSK FM+KL+K + AG L+ IAIDE HCCS WGHDFRPDY+ L IL
Sbjct: 99 GELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGIL 158
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
K FP VP++ LTATAT KV +D+ +ML I CV + NRPNLFY+V K K +
Sbjct: 159 KVQFPSVPMIALTATATNKVQIDLIEMLHIPRCVKFVSTINRPNLFYKVFEKSPVGKVVI 218
Query: 227 DELADLMSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA-------------- 271
DE+A+ +S + N+SGI+Y S KECE + +EL RG+ YHA
Sbjct: 219 DEIANFISESYPNNESGIVYCFSRKECEQVAKELSERGILADYYHADMDVISREKVHMRW 278
Query: 272 ---KLESNV-SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
KL+ V ++AFG+GI+KP+VRFVIHH LSKSME +YQ S
Sbjct: 279 SKSKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQES 320
>gi|108864716|gb|ABA95537.2| ATP-dependent DNA helicase, RecQ family protein, expressed [Oryza
sativa Japonica Group]
gi|215701406|dbj|BAG92830.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 665
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 116/222 (52%), Positives = 149/222 (67%), Gaps = 19/222 (8%)
Query: 107 SSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
LK+LYV+PEK++KSK FM+KL+K + AG L+ IAIDE HCCS WGHDFRPDY+ L IL
Sbjct: 79 GELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGIL 138
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
K FP VP++ LTATAT KV +D+ +ML I CV + NRPNLFY+V K K +
Sbjct: 139 KVQFPSVPMIALTATATNKVQIDLIEMLHIPRCVKFVSTINRPNLFYKVFEKSPVGKVVI 198
Query: 227 DELADLMSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA-------------- 271
DE+A+ +S + N+SGI+Y S KECE + +EL RG+ YHA
Sbjct: 199 DEIANFISESYPNNESGIVYCFSRKECEQVAKELSERGILADYYHADMDVISREKVHMRW 258
Query: 272 ---KLESNV-SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
KL+ V ++AFG+GI+KP+VRFVIHH LSKSME +YQ S
Sbjct: 259 SKSKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQES 300
>gi|302926382|ref|XP_003054285.1| hypothetical protein NECHADRAFT_30968 [Nectria haematococca mpVI
77-13-4]
gi|256735226|gb|EEU48572.1| hypothetical protein NECHADRAFT_30968 [Nectria haematococca mpVI
77-13-4]
Length = 1678
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 126/344 (36%), Positives = 188/344 (54%), Gaps = 40/344 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--------DYPW---SD 53
+PWS V+ +LK +F + FR NQL AIN L KDA ++MPT P S
Sbjct: 817 HPWSPDVQRMLKDRFRMKGFRHNQLEAINATLEGKDAFVLMPTGGGKSLCYQLPAVIKSG 876
Query: 54 RVRS---VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS-- 108
R R V+ +L + + + A+ I + + K++ + E S
Sbjct: 877 RTRGVTIVVSPLLSLMQDQVDHMKALGIQAVAFNGEC----SAQYKRQVMSAFDERSPEH 932
Query: 109 -LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
++LLYV+PE ++K+ +F ++ ++ G AR+ IDE HC S WGHDFRPDY+ L ++
Sbjct: 933 FIELLYVTPEMVSKNVAFNNGMRTLHSKGKFARLVIDEAHCVSQWGHDFRPDYKTLGQVR 992
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLD 227
+P VP++ LTATAT V++D++ L +++C FNRPNL+YEVR K K ++
Sbjct: 993 QRYPGVPVMALTATATQNVIVDIRHNLGMDNCQTFCQSFNRPNLYYEVRPKTTNDK-TIE 1051
Query: 228 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------- 276
+A L+ ++ NQSGI+YT S K E + E L G+ S YHA ++
Sbjct: 1052 AIASLVQSKYPNQSGIVYTISRKNAEKVAESLSQHGIAASHYHAHVDPQEKVEVQNAWQR 1111
Query: 277 -------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFV+HH L KS+E +YQ + G
Sbjct: 1112 GEIKIVVATIAFGMGIDKPDVRFVMHHGLPKSLEGYYQETGRAG 1155
>gi|115399192|ref|XP_001215185.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192068|gb|EAU33768.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1367
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 129/347 (37%), Positives = 185/347 (53%), Gaps = 78/347 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT----------------- 91
+PWS VR+VLK +F+L FR NQL AI+ L KDA I+MPT
Sbjct: 684 HPWSKEVRTVLKDRFHLRGFRMNQLEAIDATLSGKDAFILMPTGGGKSLCYQLPSVVTSG 743
Query: 92 ----------------------------------GKLLKKKKICLMTESSS------LKL 111
G+ K+++ +M S ++L
Sbjct: 744 ATRGVTIVVSPLLSLMQDQVSQLRKLHIKAYLLNGETPKEERQWIMRTLSGYGAEDEIEL 803
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LY++PE L K+++ + L+K+ + LARI IDE HC S WGHDFRPDY+ L L++ P
Sbjct: 804 LYITPEMLTKNQTLVNSLEKLNRKSRLARIVIDEAHCVSQWGHDFRPDYKELGNLRSQLP 863
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP++ LTATAT V +DV LQ++ C + FNRPNL YEVR KP ++ + L +A+
Sbjct: 864 GVPMMALTATATENVKVDVLHNLQMQGCELFSQSFNRPNLTYEVRPKP-SKNELLASIAN 922
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELR-NRGLRVSAYHAKLESN-------------- 276
+++ ++ NQSGIIY S CE + + LR + G++ YHA ++ +
Sbjct: 923 IITTKYPNQSGIIYCLSRDSCEKVAKSLREDYGIKAEHYHAGMKPDERNQVQHGWQAGRS 982
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VR+VIHH L KS+E +YQ + G GK S
Sbjct: 983 HVIVATIAFGMGIDKPDVRYVIHHSLPKSLEGYYQETGRAGRDGKRS 1029
>gi|366995175|ref|XP_003677351.1| hypothetical protein NCAS_0G01110 [Naumovozyma castellii CBS 4309]
gi|342303220|emb|CCC70998.1| hypothetical protein NCAS_0G01110 [Naumovozyma castellii CBS 4309]
Length = 989
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 131/346 (37%), Positives = 191/346 (55%), Gaps = 35/346 (10%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
N+PW+ V L F L FRPNQL AIN L KD ++MPT S ++ +V+KS
Sbjct: 331 NFPWTPEVDYRLHHTFKLPGFRPNQLEAINSTLSGKDVFVLMPTGGGKSLCYQLPAVVKS 390
Query: 62 KFN---------LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLL 112
L +Q+A ++ L A +I G ++K+ + L L+
Sbjct: 391 GRTKGTTIVISPLISLMQDQVA--HLLDLNIKASMISSKGTTQQRKQTFNLFVKGLLDLI 448
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
Y+SPE ++ SK +Q +Y+ G LARI +DE HC SSWGHDFRPDY+ L+ K +P+
Sbjct: 449 YISPEMISASKQCKRAIQTLYQQGKLARIVVDEAHCVSSWGHDFRPDYKQLNFFKNEYPN 508
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
+P++ LTATA V D+ + LQ+ + +K FNR NLFYEVR K KDC+ E+AD
Sbjct: 509 IPMMALTATANEHVRKDIIQNLQLRSPLFLKQSFNRINLFYEVRKKT---KDCMVEIADA 565
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
+ +F QSGIIY S CE + L+++ +R YHA +++N
Sbjct: 566 IKFQFTGQSGIIYCHSKNSCEQVSAYLQSKQIRSGFYHAGMDANERLMIQQDWQANKLQV 625
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GIDKP+VRFV H + +++E +YQ + G GK S+
Sbjct: 626 ICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGKPSY 671
>gi|302414652|ref|XP_003005158.1| ATP-dependent helicase SGS1 [Verticillium albo-atrum VaMs.102]
gi|261356227|gb|EEY18655.1| ATP-dependent helicase SGS1 [Verticillium albo-atrum VaMs.102]
Length = 1714
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 135/344 (39%), Positives = 181/344 (52%), Gaps = 45/344 (13%)
Query: 7 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS--- 57
WS+ V LK +F + FR NQL AIN L KDA ++MPT Y V S
Sbjct: 804 WSEDVTKALKDRFRMRGFRTNQLEAINATLAGKDAFVLMPTGGGKSLCYQLPAVVTSGKT 863
Query: 58 -----VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESS----S 108
V+ +L + + L A+ I + I P +++I S
Sbjct: 864 KGITVVVSPLLSLMQDQVDHLTALGIKAKAFSSAIQAPA-----RREILEFMNSPYPDHQ 918
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+LYVSPE L S F L +Y+ LAR +DE HC S WGHDFRPDY+ L L++
Sbjct: 919 FTMLYVSPEMLNASAQFERALTNVYRNQKLARFVVDEAHCVSQWGHDFRPDYKDLFKLRS 978
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
+P VPI+ LTATATT V++D+Q LQI+ C V FNRPNL Y V K +K ++
Sbjct: 979 NYPSVPIIALTATATTNVIVDIQHNLQIDKCQVFTQSFNRPNLTYAVERK---EKGLIET 1035
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELR-NRGLRVSAYHAKLESN----------- 276
+A L+ ++ NQ+GIIY S K ED+ +LR N G+ S YHA ++
Sbjct: 1036 IAQLIQSKYNNQTGIIYVLSRKNTEDVATKLRDNYGISASHYHAAMKPEEKWNVQRRWQK 1095
Query: 277 -------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIHH L KS+E +YQ + G
Sbjct: 1096 GSIKVVVATIAFGMGIDKPDVRFVIHHSLPKSLEGYYQETGRAG 1139
>gi|346979414|gb|EGY22866.1| ATP-dependent helicase SGS1 [Verticillium dahliae VdLs.17]
Length = 1518
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 133/344 (38%), Positives = 180/344 (52%), Gaps = 45/344 (13%)
Query: 7 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS-------------- 52
WS+ V LK +F + FR NQL AIN L KDA ++MPT S
Sbjct: 609 WSEDVTKALKDRFRMRGFRTNQLEAINATLAGKDAFVLMPTGGGKSLCYQLPAVVTSGKT 668
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTES----SS 108
+ V+ +L + + L A+ I + I P +++I S
Sbjct: 669 KGITVVVSPLLSLMQDQVDHLTALGIKAKAFSSAIQAPA-----RREILEFMNSPYPDHQ 723
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+LYVSPE L S F L +Y+ LAR +DE HC S WGHDFRPDY+ L L++
Sbjct: 724 FTMLYVSPEMLNASAQFERALANVYRNQKLARFVVDEAHCVSQWGHDFRPDYKDLFKLRS 783
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
+P VPI+ LTATATT V++D+Q LQI+ C V FNRPNL Y V K +K ++
Sbjct: 784 NYPSVPIIALTATATTNVIVDIQHNLQIDKCQVFTQSFNRPNLTYAVERK---EKGLIET 840
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELR-NRGLRVSAYHAKLESN----------- 276
+A L+ ++ NQ+GIIY S K ED+ +LR N G+ S YHA ++
Sbjct: 841 IAQLIQSKYDNQTGIIYVLSRKNTEDVATKLRDNYGISASHYHAAMKPEEKWNVQRRWQK 900
Query: 277 -------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIHH L KS+E +YQ + G
Sbjct: 901 GSIKVVVATIAFGMGIDKPDVRFVIHHSLPKSLEGYYQETGRAG 944
>gi|302832866|ref|XP_002947997.1| hypothetical protein VOLCADRAFT_57553 [Volvox carteri f.
nagariensis]
gi|300266799|gb|EFJ50985.1| hypothetical protein VOLCADRAFT_57553 [Volvox carteri f.
nagariensis]
Length = 646
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 125/329 (37%), Positives = 175/329 (53%), Gaps = 68/329 (20%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---------------- 92
+PWS ++ L F L +FR Q +N AL +D + ++P+G
Sbjct: 34 FPWSAKLNQTLHDVFGLREFRALQREVMNAALQGRDVLCLLPSGGGKSLCYQLPALVSPG 93
Query: 93 -------------------KLLKKKKICLMT--------------ESSSLKLLYVSPEKL 119
+ L CL + E LKLLYV+PEK+
Sbjct: 94 LTLVVSPLLSLIQDQVLSLRALSINGSCLTSLSSKEEVAEVYGKMERGELKLLYVTPEKI 153
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
SK FM+KL+K+++ G L RIAIDE HC S+WG+DFRPDY+ L +LK FP VPI+ LT
Sbjct: 154 VSSKRFMSKLEKVHQGGRLDRIAIDEAHCASAWGNDFRPDYKKLGVLKQQFPQVPIIALT 213
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF-R 238
ATAT +V D++ +L+I+ C +A NRPNLFYEV KPAA D + + + R + R
Sbjct: 214 ATATHQVCKDLKSILRIQGCEFFRASVNRPNLFYEVLPKPAAAADAIAAIVAWIHRHYPR 273
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIA 280
+SGI+Y + K+CE + EL G+ YHA +E ++A
Sbjct: 274 GESGIVYCLTRKDCETVASELAAGGVSARHYHADMEPGPREAAHAAWSAGKVQVMVATVA 333
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
FG+GI+KP+VRFV+HH LSKS+EN+YQ
Sbjct: 334 FGMGINKPDVRFVVHHSLSKSLENYYQAG 362
>gi|9945008|gb|AAG03075.1|AF294728_1 Sgs1p [Candida albicans]
Length = 1189
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 134/340 (39%), Positives = 183/340 (53%), Gaps = 40/340 (11%)
Query: 6 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS-- 57
P+ D V S+L + F L FR NQL A++ L KD ++MPT Y V+S
Sbjct: 448 PFMDEVHSILNNVFKLKSFRANQLEAVSATLSNKDVFVLMPTGGGKSLCYQLPALVKSGA 507
Query: 58 ------VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
V+ +L + L A NI K + G K I L E L +
Sbjct: 508 TKGTTVVISPLISLMQDQVQHLLAKNI----KAGMFSSKGGNDDNKHTIHLFREGF-LDI 562
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
+Y+SPE+ KS + T + K+Y LAR+ IDE HC SSWGHDFRPDYQ L K FP
Sbjct: 563 VYLSPERANKSNAMQTIMTKLYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKDKFP 622
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VPI+ LTATA KV +D+ L+I+D V++K FNR NLFYE+++K + +CL E+ D
Sbjct: 623 KVPIMALTATANEKVQMDILHNLKIKDPVLLKQSFNRTNLFYEIKLK---KSNCLLEIKD 679
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--------------- 276
+ RF +SGIIY S + CE +L GL+ S YHA + ++
Sbjct: 680 YILSRFSGKSGIIYCHSKQSCEHTSMKLNEYGLKTSFYHAGMSADKRFNIQKRWQENKIQ 739
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L +++E +YQ + G
Sbjct: 740 VICATIAFGMGIDKPDVRFVIHLYLPRTLEGYYQETGRAG 779
>gi|452838315|gb|EME40256.1| hypothetical protein DOTSEDRAFT_179253 [Dothistroma septosporum
NZE10]
Length = 1189
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 134/344 (38%), Positives = 185/344 (53%), Gaps = 37/344 (10%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS 57
+YPWSD V+ LK F L FR NQ AIN L KDA ++MPT Y +R
Sbjct: 286 SYPWSDEVKRTLKESFKLKGFRENQCEAINATLGGKDAFVLMPTGGGKSLCYQLPALIRG 345
Query: 58 --------VLKSKFNLTDFRPNQLAAINI-ALLKKDAIIIMPTGKLLKKKKICLMTESSS 108
V+ +L + + L +NI A L G LL K + +
Sbjct: 346 GKTRGVTVVISPLLSLMEDQVQHLRNLNIQAFLINSETTKEERGFLLDSLKNPDVEK--F 403
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+ LLYV+PE L+KS + +++++ AR+ IDE HC S WGHDFRPDY+ + ++
Sbjct: 404 ITLLYVTPEMLSKSAAINNAFTRLHQSRRFARLVIDEAHCVSQWGHDFRPDYKEIGEVRN 463
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
P VP++ LTATAT V LD L I+ C V FNRPNL+YEVR+K + D L
Sbjct: 464 RLPGVPVMALTATATENVKLDTIHNLGIKGCEVFTQSFNRPNLYYEVRMKGKGKND-LAS 522
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLE----SNV------ 277
+A L+ Q+GIIY S K+CE++ L+++ G++ YHA +E +NV
Sbjct: 523 IASLIKDDHPKQTGIIYCFSRKDCENMANALQSQHGIKAHHYHAGMEGPEKANVQKEWQA 582
Query: 278 --------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKPNVRFVIHH + KS+E +YQ + G
Sbjct: 583 GRYHVIVATIAFGMGIDKPNVRFVIHHTIPKSLEGYYQETGRAG 626
>gi|346322515|gb|EGX92114.1| RecQ family helicase MusN [Cordyceps militaris CM01]
Length = 1700
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 126/344 (36%), Positives = 186/344 (54%), Gaps = 40/344 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
+PWS V+ +LK +F + FR NQL AIN L +DA ++MPT Y VR+
Sbjct: 799 FPWSPEVQRMLKDRFRMKGFRQNQLEAINATLSGQDAFVLMPTGGGKSLCYQLPAVVRTG 858
Query: 58 -------VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS-- 108
V+ +L + + + A+ I + + K++ + E S
Sbjct: 859 KTRGVTIVISPLLSLMQDQVDHMKALGIQAVAFNGEC----SAEYKRQVMNAFGERSPEH 914
Query: 109 -LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
++LLY++PE ++K+ +F LQK+Y+ G AR+ IDE HC S WGHDFRPDY+ L +
Sbjct: 915 FIELLYITPEMISKNMAFNAALQKLYQNGKFARLVIDEAHCVSQWGHDFRPDYKALGQAR 974
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLD 227
FP+VP++ LTATAT V++D++ L + C V FNRPNLFYEVR K A ++
Sbjct: 975 KKFPNVPVMALTATATQNVIVDIRHNLGMHTCKVFSQSFNRPNLFYEVRPKGTA-ASSIE 1033
Query: 228 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------- 276
+ADL+ + +GI+Y S K E++ ++L G+ YHA +
Sbjct: 1034 TIADLIHSHYAGLTGIVYALSRKGTENVAKKLGEAGISAYHYHAGMTPPEKVSVQKKWQK 1093
Query: 277 -------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIHH L KS+E +YQ + G
Sbjct: 1094 GDVKVVVATIAFGMGIDKPDVRFVIHHGLPKSLEGYYQETGRAG 1137
>gi|255932597|ref|XP_002557855.1| Pc12g10330 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582474|emb|CAP80660.1| Pc12g10330 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1511
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 128/348 (36%), Positives = 184/348 (52%), Gaps = 77/348 (22%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--------------- 91
+++PWS VR VLK +F+L FRPNQL AI+ L KD I+MPT
Sbjct: 627 SNHPWSQEVRKVLKERFHLRGFRPNQLEAIDATLAGKDTFILMPTGGGKSLCYQLPSVVT 686
Query: 92 ------------------------------------GKLLKKKKICLMTESSS-----LK 110
G ++K +M++ S+ ++
Sbjct: 687 GGRTTGVTIVISPLLSLMEDQVSHLRKLNIKAFMVNGDTNPEEKSWIMSQLSNAAGEGME 746
Query: 111 LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170
+LY++PE L+KS++ + L+K++ LAR+ IDE HC S WGHDFRPDY+ L ++ F
Sbjct: 747 VLYITPEMLSKSQALIRALEKLHGRNRLARLVIDEAHCVSQWGHDFRPDYKELGEVRARF 806
Query: 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA 230
P VP++ LTATAT V +DV L+I DC V FNRPNL YEVR K + L +A
Sbjct: 807 PGVPVMALTATATENVKVDVMHNLKITDCEVFLQSFNRPNLTYEVRSK-GKNDEVLASMA 865
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESNV------------ 277
+ ++ ++NQ GIIY S K C+ + E+L+ + L+ AYHA + + V
Sbjct: 866 ETITSSYQNQCGIIYCLSRKTCDKVAEDLQKKYHLKALAYHAGMSAKVKSEAQRKWQMGR 925
Query: 278 ------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDK +VRFV+HH + KS+E +YQ + G GK S
Sbjct: 926 VHIIVATIAFGMGIDKADVRFVMHHSIPKSLEGYYQETGRAGRDGKRS 973
>gi|384252651|gb|EIE26127.1| ATP-dependent DNA helicase [Coccomyxa subellipsoidea C-169]
Length = 517
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 120/308 (38%), Positives = 178/308 (57%), Gaps = 25/308 (8%)
Query: 25 RPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDFRPNQLAAINIALLK 82
RP+Q IN L +D + +MPT S ++ +++ L L + L+
Sbjct: 14 RPHQHEIINATLQGRDVLCLMPTGGGKSLCYQLPALISGGLTLVVSPLLSLIHDQVLGLR 73
Query: 83 KDAIIIMPTGKLLKKKKICL----MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCL 138
I ++ L K++I M + ++ +YV+PE++ +K FM+KL+K+YKAG L
Sbjct: 74 SLGIPVISLSSLTPKEEITAAYKQMDSDTDIRFVYVTPERVVSAKRFMSKLEKLYKAGRL 133
Query: 139 ARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIED 198
RIAIDE HCCS WG+DFRPDY+ L +LK FP+VPIL LTATAT V ++ +L+I
Sbjct: 134 TRIAIDEAHCCSQWGNDFRPDYKKLGVLKQQFPEVPILALTATATDLVCQSIKDILRISA 193
Query: 199 CVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFR-NQSGIIYTTSIKECEDLRE 257
C ++ +RPNL++ VR KPA +D ++ + +R GI+Y + KE E L
Sbjct: 194 CEFFRSSVDRPNLYWTVRQKPAKAEDVTADMIAWIRGNYRLTDCGIVYCQTRKESESLAA 253
Query: 258 ELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLS 299
ELR +G+R + YHA + + V ++AFG+GI+KP+VRFVIHH LS
Sbjct: 254 ELRQQGMRAACYHADMAAGVREAVHSQWSAGEVQICVATVAFGMGINKPDVRFVIHHSLS 313
Query: 300 KSMENFYQ 307
KS+EN+YQ
Sbjct: 314 KSVENYYQ 321
>gi|322708811|gb|EFZ00388.1| QDE3 protein [Metarhizium anisopliae ARSEF 23]
Length = 1697
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 122/345 (35%), Positives = 187/345 (54%), Gaps = 42/345 (12%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
+PWS V+ +LK +F + FR NQL AIN L KDA ++MPT Y VR+
Sbjct: 819 HPWSPEVQKMLKDRFRMKGFRQNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAIVRTG 878
Query: 58 -------VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS-- 108
V+ +L + + + + I A+ K++I + S
Sbjct: 879 KTRGVTIVVSPLLSLMQDQVDHMKGLGI-----QAVAFNGGCSAEYKRQIMSTFDEPSPE 933
Query: 109 --LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
++LLYV+PE ++ + +F +Q +Y+ G AR+ IDE HC S WGHDFRPDY+ + +
Sbjct: 934 HFIELLYVTPEMVSMNSAFNNAMQTLYQRGKFARLVIDEAHCVSQWGHDFRPDYKTIGQV 993
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
+ FP VP + LTATAT V++D++ L + +C V FNRPNL+YEVR K + +
Sbjct: 994 RMRFPRVPFMALTATATQNVIVDIKHNLNMANCQVFSQSFNRPNLYYEVRTK-KSHANAT 1052
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------- 276
+ +A L++ ++ N +GI+YT S K+ E++ + L G+ YHA ++
Sbjct: 1053 ESIASLINAKYHNTTGIVYTLSRKQAEEVAQTLAGYGIAARHYHAAIDPQAKVDVQRSWQ 1112
Query: 277 --------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFV+HH L KS+E +YQ + G
Sbjct: 1113 KGDIKVVVATIAFGMGIDKPDVRFVMHHGLPKSLEGYYQETGRAG 1157
>gi|378733670|gb|EHY60129.1| bloom syndrome protein [Exophiala dermatitidis NIH/UT8656]
Length = 1681
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 134/346 (38%), Positives = 184/346 (53%), Gaps = 43/346 (12%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
+PWS V VLK KF+L FR NQL AIN L KDA ++MPT Y V+S
Sbjct: 812 HPWSKDVALVLKKKFHLRGFRHNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPAVVQSG 871
Query: 58 -------VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS-- 108
V+ +L + L A+NI A +I + +K I S
Sbjct: 872 HTRGVTIVISPLLSLMQDQVEHLKALNI-----QAQLINGETTVAHRKTILDHLRGDSPH 926
Query: 109 --LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
++LLYV+PE + ++++F+ + ++ LARI IDE HC S WGHDFRPDY+ L
Sbjct: 927 DFVQLLYVTPEMVNQNQTFVRAFEGLHSRCLLARIVIDEAHCVSQWGHDFRPDYKALGEF 986
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
++ F VP++ LTATAT V DV ++L +E+C V FNRPNL YEVR K + L
Sbjct: 987 RSRFNAVPVMALTATATENVKFDVMQVLGMENCEVFTQSFNRPNLTYEVRPK-GKGRAVL 1045
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN--------- 276
D +ADL+ + Q+GI+Y S K CE + +LR + YHA + S
Sbjct: 1046 DSIADLIKSTYDGQAGIVYCLSRKNCESVATQLRKEYHIEAQHYHAGIPSGKRIEIQQKW 1105
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G
Sbjct: 1106 QEGEFNVIVATIAFGMGIDKPDVRFVIHHTIPKSLEGYYQETGRAG 1151
>gi|255725388|ref|XP_002547623.1| hypothetical protein CTRG_01930 [Candida tropicalis MYA-3404]
gi|240135514|gb|EER35068.1| hypothetical protein CTRG_01930 [Candida tropicalis MYA-3404]
Length = 1227
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 136/343 (39%), Positives = 183/343 (53%), Gaps = 35/343 (10%)
Query: 6 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRSVL 59
P+ D V VL + F L DFR NQL A+ L KD ++MPT Y ++S
Sbjct: 606 PFIDEVYKVLDNTFKLKDFRSNQLEAVCATLQGKDVFVLMPTGGGKSLCYQLPALIKSGK 665
Query: 60 KSKFN-----LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYV 114
S L +Q+ + +K A +I G K + L ++Y+
Sbjct: 666 TSGTTVVISPLISLMQDQVQHLQSKGIK--AGMISAHGAKGDNKHTTNLFREGFLDIVYL 723
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
SPEK +S + ++YK LAR+ IDE HC SSWGHDFRPDYQ L K FP+VP
Sbjct: 724 SPEKANRSGHTQKIIARLYKNDQLARVVIDEAHCLSSWGHDFRPDYQGLKFFKEEFPNVP 783
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
I+ LTATA KV D+ L ++D + +K FNR NLFYE+R+K Q+D L E+ D +
Sbjct: 784 IMALTATANEKVREDILHNLNMKDPIFLKQSFNRTNLFYEIRLK---QRDFLKEIKDYIM 840
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA--------KLESN---------- 276
+ NQ+GIIY S + CE +L GLR S YHA K+++N
Sbjct: 841 EKHPNQTGIIYCHSKQSCEQTSAKLNEYGLRTSFYHAGMSTEDRYKIQTNWQNNKIQVIC 900
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIH L +S+E +YQ + G GKHS
Sbjct: 901 ATIAFGMGIDKPDVRFVIHLFLPRSLEGYYQETGRAGRDGKHS 943
>gi|238883901|gb|EEQ47539.1| hypothetical protein CAWG_06119 [Candida albicans WO-1]
Length = 1195
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 183/340 (53%), Gaps = 40/340 (11%)
Query: 6 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS-- 57
P+ D V S+L + F L FR NQL A++ L KD ++MPT Y V+S
Sbjct: 454 PFMDEVHSILNNVFKLKSFRANQLEAVSATLSNKDVFVLMPTGGGKSLCYQLPALVKSGA 513
Query: 58 ------VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
V+ +L + L A NI K + G K I L E L +
Sbjct: 514 TKGTTVVISPLISLMQDQVQHLLAKNI----KAGMFSSKGGNDDNKHTIHLFREGF-LDI 568
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
+Y+SPE+ KS + T + K+Y LAR+ IDE HC SSWGHDFRPDYQ L K FP
Sbjct: 569 VYLSPERANKSNAMQTIMTKLYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKDKFP 628
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VPI+ LTATA KV +D+ L+++D V++K FNR NLFYE+++K + +CL E+ D
Sbjct: 629 KVPIMALTATANEKVQMDILHNLKMKDPVLLKQSFNRTNLFYEIKLK---KSNCLLEIKD 685
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--------------- 276
+ RF +SGIIY S + CE +L GL+ S YHA + ++
Sbjct: 686 YILSRFSGKSGIIYCHSKQSCEHTSMKLNEYGLKTSFYHAGMSADKRFNIQKRWQENKIQ 745
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L +++E +YQ + G
Sbjct: 746 VICATIAFGMGIDKPDVRFVIHLYLPRTLEGYYQETGRAG 785
>gi|68477651|ref|XP_717138.1| hypothetical protein CaO19.5335 [Candida albicans SC5314]
gi|68477814|ref|XP_717059.1| hypothetical protein CaO19.12795 [Candida albicans SC5314]
gi|46438756|gb|EAK98082.1| hypothetical protein CaO19.12795 [Candida albicans SC5314]
gi|46438838|gb|EAK98163.1| hypothetical protein CaO19.5335 [Candida albicans SC5314]
Length = 1189
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 183/340 (53%), Gaps = 40/340 (11%)
Query: 6 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS-- 57
P+ D V S+L + F L FR NQL A++ L KD ++MPT Y V+S
Sbjct: 448 PFMDEVHSILNNVFKLKSFRANQLEAVSATLSNKDVFVLMPTGGGKSLCYQLPALVKSGA 507
Query: 58 ------VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
V+ +L + L A NI K + G K I L E L +
Sbjct: 508 TKGTTVVISPLISLMQDQVQHLLAKNI----KAGMFSSKGGNDDNKHTIHLFREGF-LDI 562
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
+Y+SPE+ KS + T + K+Y LAR+ IDE HC SSWGHDFRPDYQ L K FP
Sbjct: 563 VYLSPERANKSNAMQTIMTKLYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKDKFP 622
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VPI+ LTATA KV +D+ L+++D V++K FNR NLFYE+++K + +CL E+ D
Sbjct: 623 KVPIMALTATANEKVQMDILHNLKMKDPVLLKQSFNRTNLFYEIKLK---KSNCLLEIKD 679
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--------------- 276
+ RF +SGIIY S + CE +L GL+ S YHA + ++
Sbjct: 680 YILSRFSGKSGIIYCHSKQSCEHTSMKLNEYGLKTSFYHAGMSADKRFNIQKRWQENKIQ 739
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L +++E +YQ + G
Sbjct: 740 VICATIAFGMGIDKPDVRFVIHLYLPRTLEGYYQETGRAG 779
>gi|159465525|ref|XP_001690973.1| hypothetical protein CHLREDRAFT_128016 [Chlamydomonas reinhardtii]
gi|158279659|gb|EDP05419.1| predicted protein [Chlamydomonas reinhardtii]
Length = 489
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 138/335 (41%), Positives = 188/335 (56%), Gaps = 44/335 (13%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQ 72
S L+ F L D+RP Q +N ++ +D + ++P S +S+ L RP
Sbjct: 3 STLRDVFGLHDYRPLQREVMNASMQGRDVLCLLP-----SGGGKSLCYQLPAL--LRPGL 55
Query: 73 LAAINIAL-LKKDAIIIMPTGKLLKKKKICLMTESS--------------SLKLLYVSPE 117
++ L L +D ++ + + L CL + SS LKLLYV+PE
Sbjct: 56 TLVVSPLLALIQDQVLSL---RALSIDGACLTSLSSKEDVADVYSRMDRGQLKLLYVTPE 112
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
K+ SK FM+KL+K ++AG L RIAIDE HC S WG+DFRPDY+ L ILK FP VPIL
Sbjct: 113 KIVSSKRFMSKLEKAHQAGRLDRIAIDEAHCASQWGNDFRPDYKKLGILKQQFPQVPILA 172
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT +V D++ +L+I+ C +A NRPNLFYEVR KPAA D + + +
Sbjct: 173 LTATATHQVCEDLKAILRIQGCEFFRASVNRPNLFYEVRPKPAAAADMTAAIVAWIREHY 232
Query: 238 -RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
R +SGI+Y + K+CE L +L G+R YHA +E +
Sbjct: 233 PRGESGIVYCLTRKDCEALAADLAAAGIRARHYHADMEPGPREAAHTAWSAGRVQVMVAT 292
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
IAFG+GI+KP+VRFVIHH LSKS+EN+YQ S G
Sbjct: 293 IAFGMGINKPDVRFVIHHSLSKSVENYYQESGRAG 327
>gi|291237646|ref|XP_002738744.1| PREDICTED: Bloom syndrome protein-like [Saccoglossus kowalevskii]
Length = 1050
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 174/337 (51%), Gaps = 75/337 (22%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG--------------- 92
D P S + V + F L FR NQL AIN ALL KD I+MPTG
Sbjct: 447 DLPHSKEMLKVFRQIFGLHKFRTNQLEAINAALLSKDCFILMPTGGGKSLCYQLPGSISK 506
Query: 93 ----------KLLKKK--KICLMTESSS------------------------LKLLYVSP 116
L++ + K+CL S+ LKLLYV+P
Sbjct: 507 GLTLVVSPLKSLIQDQVQKLCLRDVPSAHLSGDASPNEVELIYRELSRRDPQLKLLYVTP 566
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK++ S ++ L+ +Y G L+R IDE HC S WGHDFRPDY+ L+ L+ +FP VPI+
Sbjct: 567 EKISSSSKLVSTLENLYSRGMLSRFVIDEAHCVSQWGHDFRPDYKRLNKLRELFPTVPIM 626
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQ--KDCLDELADLMS 234
LTATAT +V D+ K L+I + FNR NL Y + K ++ +DC+ +L+
Sbjct: 627 ALTATATPRVRADIVKQLKIRSPIWFIQSFNRSNLKYSIYPKKPSKVTQDCI----NLIQ 682
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------ 276
RF +SGIIY S ECE + EL + G+ AYHA LESN
Sbjct: 683 ARFAGESGIIYCLSRNECEKVAAELSSAGISAKAYHAGLESNSRTYTQQAWVRDEYKVVC 742
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIHH L KS+E FYQ S G
Sbjct: 743 ATIAFGMGIDKPDVRFVIHHSLPKSIEGFYQESGRAG 779
>gi|400595361|gb|EJP63166.1| RecQ family ATP-dependent DNA helicase [Beauveria bassiana ARSEF
2860]
Length = 1678
Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 123/344 (35%), Positives = 187/344 (54%), Gaps = 40/344 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
+PWS V+ +LK +F + FR NQL AIN L +DA ++MPT Y VR+
Sbjct: 788 FPWSPEVQRMLKDRFRMKGFRQNQLEAINATLSGQDAFVLMPTGGGKSLCYQLPAVVRTG 847
Query: 58 -------VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS-- 108
V+ +L + + + A+ I + + K++ + E S
Sbjct: 848 KTRGVTIVVSPLLSLMQDQVDHMKALGIQAVAFNGEC----STEYKRQVMSTFGERSPEH 903
Query: 109 -LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
++LLY++PE ++K+ +F LQ++Y+ G AR+ IDE HC S WGHDFRPDY+ L +
Sbjct: 904 FIELLYITPEMISKNMAFNNALQRLYQNGKFARLVIDEAHCVSQWGHDFRPDYKNLGQAR 963
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLD 227
FP+VP++ LTATAT V+LD++ L + C + FNRPNL+YEVR K + ++
Sbjct: 964 RKFPNVPVMALTATATQNVILDIRHNLGMNTCKIFSQSFNRPNLYYEVRSK-GSPVSAVE 1022
Query: 228 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------- 276
+A+L+ ++ +GI+Y S E L E+LR + + YHA + +
Sbjct: 1023 TIAELIHSKYAGLTGIVYALSRAGTEKLAEKLRKQRISAQHYHAGMTAPDKVSVQTRWQQ 1082
Query: 277 -------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIHH L KS+E +YQ + G
Sbjct: 1083 GAVKVVVATIAFGMGIDKPDVRFVIHHGLPKSLEGYYQETGRAG 1126
>gi|428164597|gb|EKX33617.1| hypothetical protein GUITHDRAFT_39919, partial [Guillardia theta
CCMP2712]
Length = 360
Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 125/330 (37%), Positives = 171/330 (51%), Gaps = 70/330 (21%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG--------------- 92
D+ WS RSVL+ F L+ FRP Q IN L KD ++++PTG
Sbjct: 5 DFEWSGETRSVLRDVFRLSSFRPLQEEIINATLSNKDTLVLLPTGGGKSLVYMLPAVMRK 64
Query: 93 --KLLKKKKICLM----------------------------------TESSSLKLLYVSP 116
L+ I LM E SSLKLLYV+P
Sbjct: 65 GLTLVVSPLISLMHDQVSQLRQLGIRAALLCSASDKMETKQIHDEIACEGSSLKLLYVTP 124
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
E++AKSK+ ++KL+K +K L R+ IDE HC S WGHDFR DY L I K +PDVP++
Sbjct: 125 ERVAKSKTLLSKLEKCWKMSLLQRVVIDEAHCISQWGHDFRGDYTKLGIFKLQYPDVPVM 184
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATAT+KV D++ LQI C +A +R NL +EV+ K + Q + ++A+ + R
Sbjct: 185 ALTATATSKVQEDIKDSLQISFCETFRASVDRANLQFEVKEKASNQAASMQQVAEEILSR 244
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------- 277
F N GI+Y S KE E L + L+ +G+R YHA L +
Sbjct: 245 FTNMPGIVYCFSKKEAEQLAQYLQEQGIRARFYHADLGVQMRSLYVYEDWSSGRIQVVVA 304
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GI+K + RFVIHH +SKS+ +YQ
Sbjct: 305 TIAFGMGINKLDTRFVIHHTMSKSLSAYYQ 334
>gi|345486372|ref|XP_001605988.2| PREDICTED: Bloom syndrome protein homolog [Nasonia vitripennis]
Length = 1211
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 134/341 (39%), Positives = 187/341 (54%), Gaps = 39/341 (11%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YP 50
N+P S + V K++F L FRPNQL AIN +L D ++MPT P
Sbjct: 508 NFPHSQEMLHVFKTRFGLHQFRPNQLPAINAVILGHDCFVLMPTGGGKSLCYQLPALLAP 567
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLK 110
V S L+S L + +L +++I+ L + + +K L S+LK
Sbjct: 568 GVTIVISPLRS---LIVDQTQKLLSLDISALYLTGDLSNEQMNGVYRK---LYNTESNLK 621
Query: 111 LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170
LLYV+PEK++KS F L ++Y+ G LAR IDEVHC S WGHDFRPDY+ LS+L+ F
Sbjct: 622 LLYVTPEKISKSTKFCDSLLRLYRDGKLARFVIDEVHCVSQWGHDFRPDYKKLSMLRERF 681
Query: 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA 230
P VPI+ LTATAT +V D+ L ++ + FNRPNL Y V ++ + L +
Sbjct: 682 PGVPIIALTATATQRVRSDILHQLHLQSPKWFISSFNRPNLRYTVTLRKSKYPYQL--VL 739
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------- 277
DL+ +F N GIIY S +C++L E L+ G++ +YHA L+ V
Sbjct: 740 DLIKTKFPNDCGIIYCFSRNDCDNLAEALKKEGIQALSYHAGLDDKVRTDRQIQWVSEKV 799
Query: 278 -----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKPNVR+VIH + KS+E +YQ S G
Sbjct: 800 KVICATIAFGMGIDKPNVRYVIHATMPKSIEGYYQESGRAG 840
>gi|242764771|ref|XP_002340840.1| RecQ family helicase MusN [Talaromyces stipitatus ATCC 10500]
gi|218724036|gb|EED23453.1| RecQ family helicase MusN [Talaromyces stipitatus ATCC 10500]
Length = 1574
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 131/353 (37%), Positives = 196/353 (55%), Gaps = 43/353 (12%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP-----------WS 52
++ WS VR+V++ +F+L FRPNQL AIN L KDA ++MPT S
Sbjct: 685 SFAWSKDVRTVMRDRFHLKGFRPNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPSVIHS 744
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS---- 108
R + V L +Q+ + +K A I G + + K +M+ SS
Sbjct: 745 GRTKGVTIVVSPLLSLMEDQVDHLQKLGIK--AFFI--NGDVTPEHKRWVMSALSSPFAD 800
Query: 109 --LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
L+LLYV+PE + K+ + L+ ++ LAR+ IDE HC S WGHDFRPDY+ L
Sbjct: 801 RELELLYVTPEMVNKNLTLRDILKTLHANRKLARLVIDEAHCVSQWGHDFRPDYKELGSF 860
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
++ FP +P++ LTATAT V +DV L+++ C V+ FNRPNL Y+V K + D +
Sbjct: 861 RSEFPGIPVMALTATATENVKIDVINNLRMKGCEVLSQSFNRPNLTYDVLPKKGSAPDII 920
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSA--YHAKLESN-------- 276
++AD++ ++ ++GI+Y S K+CE + +EL ++G ++ A YHA + S
Sbjct: 921 SQIADIIQTSYKRKAGIVYCLSRKDCEKVAQEL-SKGYKIKATHYHAGMASAERTAVQRD 979
Query: 277 ----------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G GK S
Sbjct: 980 WQSGKYDVIVATIAFGMGIDKPDVRFVIHHTMPKSLEGYYQETGRAGRDGKRS 1032
>gi|358398791|gb|EHK48142.1| hypothetical protein TRIATDRAFT_262699 [Trichoderma atroviride IMI
206040]
Length = 1621
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/344 (35%), Positives = 189/344 (54%), Gaps = 40/344 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--------DYPW---SD 53
+ WS V+ +LK +F + FR NQL AIN L +DA ++MPT P S
Sbjct: 738 HSWSADVQKILKDRFRMKGFRHNQLEAINATLAGEDAFVLMPTGGGKSLCYQLPAVVKSG 797
Query: 54 RVRS---VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS-- 108
R R V+ +L + + + A+ I + ++ K++ + E +
Sbjct: 798 RTRGVTIVISPLLSLMQDQVDHMKALGIQAVAFNSEC----SAEYKRQVMSAFNERNPEH 853
Query: 109 -LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
++LLY++PE + S F+ + +Y+ AR IDE HC S WGHDFRPDY+ L L+
Sbjct: 854 FIELLYITPEMASNSVQFLNAMVNLYQKQKFARFVIDEAHCVSQWGHDFRPDYKNLGQLR 913
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLD 227
+ FP+VP++ LTATAT V++D++ L + +C V FNRPNL+YEVR K +
Sbjct: 914 SKFPNVPVMALTATATQNVIVDIKYNLGMINCQVFSQSFNRPNLYYEVRPK-GSNPVVTQ 972
Query: 228 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------- 276
++A L++ ++RN +GI+YT S K+ ED+ E+L N G+ YHA++
Sbjct: 973 QIASLINSKYRNVTGIVYTISRKQAEDVAEKLSNNGIAARHYHAQITPAEKVEVQQAWQK 1032
Query: 277 -------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFV+HH + KS+E +YQ + G
Sbjct: 1033 GQIKVVVATIAFGMGIDKPDVRFVMHHGIPKSLEGYYQETGRAG 1076
>gi|326479495|gb|EGE03505.1| RecQ family helicase MusN [Trichophyton equinum CBS 127.97]
Length = 1531
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 178/347 (51%), Gaps = 78/347 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT----------------- 91
+PWS V+S ++ F L FRPNQL AIN L KD ++MPT
Sbjct: 656 HPWSKDVKSAMRETFKLRGFRPNQLEAINSTLSGKDTFVLMPTGGGKSLCYQLPSIIRTG 715
Query: 92 ----------------------------------GKLLKKKKICLMTESSSLK------L 111
G + K ++ +M SL+ L
Sbjct: 716 KTKGVTIVISPLLSLMQDQVAHLQKLNVKAFLINGDVSKDERATIMNNLRSLRADSLIQL 775
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PE LAKS++ + L +++ LARI IDE HC S WGHDFRPDY L ++ +P
Sbjct: 776 LYVTPEMLAKSRAMESVLLQLHSNDKLARIVIDEAHCVSQWGHDFRPDYTALGTMREKYP 835
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP++ LTATAT V +DV L+++ C V FNRPNL YEVR K AQ D L ++AD
Sbjct: 836 GVPVMALTATATPNVQVDVIHNLRMKGCEVFTQSFNRPNLTYEVRKKGRAQ-DALKDIAD 894
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN-------------- 276
L++ + ++ GIIY S K CE + +L ++ G++ + YHA L S
Sbjct: 895 LITNDYPDKCGIIYCLSRKTCERVAMQLSSKFGVKAAHYHAGLSSKDRFTVQRDWQSGKH 954
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDK NVRFVIHH + +S+E +YQ + G GK S
Sbjct: 955 NVIVATIAFGMGIDKANVRFVIHHSIPQSLEGYYQETGRAGRDGKRS 1001
>gi|119193364|ref|XP_001247288.1| hypothetical protein CIMG_01059 [Coccidioides immitis RS]
gi|392863466|gb|EAS35781.2| RecQ family ATP-dependent DNA helicase [Coccidioides immitis RS]
Length = 1569
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 131/353 (37%), Positives = 194/353 (54%), Gaps = 45/353 (12%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP-----------WS 52
NYPWS V++ L+ FNL FRPNQL AIN L KDA ++MPT S
Sbjct: 690 NYPWSADVKAALRDIFNLRGFRPNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPSVVQS 749
Query: 53 DRVRSV---LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE---- 105
R R V + +L D + QL ++++ A I + K ++++I +
Sbjct: 750 GRTRGVTVVISPLLSLMDDQVGQLRSLSVK-----AHFINGSLKAAERRQILEYLQDPRV 804
Query: 106 SSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSI 165
++LLYV+PE + KS++ + L+++++ AR+ IDE HC S WGHDFRPDY+ L
Sbjct: 805 EDQIQLLYVTPEMVNKSQAMLDTLRQLHRRKKFARLVIDEAHCVSQWGHDFRPDYKELGD 864
Query: 166 LKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDC 225
+ FP VP++ LTATAT V +DV L ++ C FNRPNL YEVR+K +D
Sbjct: 865 FRRHFPGVPLMALTATATQNVKVDVIHNLGMDGCEKFTQSFNRPNLTYEVRVK-GNHEDV 923
Query: 226 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN-------- 276
L+ +A ++ + ++GIIY S K CE + ++L + ++ + YHA + +
Sbjct: 924 LENIAKIIDFHY-GKTGIIYCLSRKNCEKVAKDLCTKYHVKATHYHAGMAPDDRIRVQRE 982
Query: 277 ----------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G GK S
Sbjct: 983 WQDGKHNVIVATIAFGMGIDKPDVRFVIHHTIPKSLEGYYQETGRAGRDGKRS 1035
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 43 IIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG 92
++ +YPWS V++ L+ FNL FRPNQL AIN L KDA ++MPTG
Sbjct: 685 VVEGMNYPWSADVKAALRDIFNLRGFRPNQLEAINATLSGKDAFVLMPTG 734
>gi|303312131|ref|XP_003066077.1| DNA helicase recq1, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240105739|gb|EER23932.1| DNA helicase recq1, putative [Coccidioides posadasii C735 delta
SOWgp]
Length = 1310
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 131/353 (37%), Positives = 194/353 (54%), Gaps = 45/353 (12%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP-----------WS 52
NYPWS V++ L+ FNL FRPNQL AIN L KDA ++MPT S
Sbjct: 431 NYPWSADVKAALRDIFNLRGFRPNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPSVVQS 490
Query: 53 DRVRSV---LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE---- 105
R R V + +L D + QL ++++ A I + K ++++I +
Sbjct: 491 GRTRGVTVVISPLLSLMDDQVGQLRSLSVK-----AHFINGSLKAAERRQILEYLQDPRV 545
Query: 106 SSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSI 165
++LLYV+PE + KS++ + L+++++ AR+ IDE HC S WGHDFRPDY+ L
Sbjct: 546 EDQIQLLYVTPEMVNKSQAMLDTLRQLHRRKKFARLVIDEAHCVSQWGHDFRPDYKELGD 605
Query: 166 LKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDC 225
+ FP VP++ LTATAT V +DV L ++ C FNRPNL YEVR+K +D
Sbjct: 606 FRRHFPGVPLMALTATATQNVKVDVIHNLGMDGCEKFTQSFNRPNLTYEVRVK-GNHEDV 664
Query: 226 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN-------- 276
L+ +A ++ + ++GIIY S K CE + ++L + ++ + YHA + +
Sbjct: 665 LENIAKIIDFHY-GKTGIIYCLSRKNCEKVAKDLCTKYHVKATHYHAGMAPDDRIRVQRE 723
Query: 277 ----------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G GK S
Sbjct: 724 WQDGKHNVIVATIAFGMGIDKPDVRFVIHHTIPKSLEGYYQETGRAGRDGKRS 776
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 43 IIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG 92
++ +YPWS V++ L+ FNL FRPNQL AIN L KDA ++MPTG
Sbjct: 426 VVEGMNYPWSADVKAALRDIFNLRGFRPNQLEAINATLSGKDAFVLMPTG 475
>gi|342865489|gb|EGU71814.1| hypothetical protein FOXB_17670 [Fusarium oxysporum Fo5176]
Length = 1563
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/308 (38%), Positives = 168/308 (54%), Gaps = 42/308 (13%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG-------------- 92
T + WS V+ +L+ +F + FR NQL AIN L KDA ++MPTG
Sbjct: 822 TKHTWSPEVQRMLEDRFRMKGFRHNQLEAINETLGGKDAFVLMPTGGGITIVVSPLLSLM 881
Query: 93 -------KLLKKKKICLMTESSSL--KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAI 143
K L + + E S+ + + + EK + L+ +Y G L+RI I
Sbjct: 882 QDQVDHMKALGVQAVAFNGEYSAEYKRQVMTAFEKRSPEDYIELLLRTLYDNGKLSRIVI 941
Query: 144 DEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIK 203
DE HC S WGHDFRPDY+ L ++ +P VP++ LTATAT V++D++ +L +++C
Sbjct: 942 DEAHCVSQWGHDFRPDYKTLGEVRQKYPGVPVMALTATATQNVIVDIRHILGMDNCQTFS 1001
Query: 204 APFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRG 263
FNRPNL YEVR K K C+DE+A L+ ++ NQSGI+YT S K E + E L +G
Sbjct: 1002 QSFNRPNLHYEVRGKTTNAK-CMDEIASLIMSKYANQSGIVYTVSRKNAEKVAESLSIQG 1060
Query: 264 LRVSAYHAKLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENF 305
+ YHA L+ +IAFG+GIDKP+VRFVIHH L K++E +
Sbjct: 1061 ITARHYHAGLDPQEKVEVQTSWQQGQVKIVVATIAFGMGIDKPDVRFVIHHGLPKTLEGY 1120
Query: 306 YQVSIAFG 313
YQ + G
Sbjct: 1121 YQETGRAG 1128
>gi|320040058|gb|EFW21992.1| RecQ helicase MUSN [Coccidioides posadasii str. Silveira]
Length = 1569
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 131/353 (37%), Positives = 194/353 (54%), Gaps = 45/353 (12%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP-----------WS 52
NYPWS V++ L+ FNL FRPNQL AIN L KDA ++MPT S
Sbjct: 690 NYPWSADVKAALRDIFNLRGFRPNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPSVVQS 749
Query: 53 DRVRSV---LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE---- 105
R R V + +L D + QL ++++ A I + K ++++I +
Sbjct: 750 GRTRGVTVVISPLLSLMDDQVGQLRSLSVK-----AHFINGSLKAAERRQILEYLQDPRV 804
Query: 106 SSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSI 165
++LLYV+PE + KS++ + L+++++ AR+ IDE HC S WGHDFRPDY+ L
Sbjct: 805 EDQIQLLYVTPEMVNKSQAMLDTLRQLHRRKKFARLVIDEAHCVSQWGHDFRPDYKELGD 864
Query: 166 LKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDC 225
+ FP VP++ LTATAT V +DV L ++ C FNRPNL YEVR+K +D
Sbjct: 865 FRRHFPGVPLMALTATATQNVKVDVIHNLGMDGCEKFTQSFNRPNLTYEVRVK-GNHEDV 923
Query: 226 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN-------- 276
L+ +A ++ + ++GIIY S K CE + ++L + ++ + YHA + +
Sbjct: 924 LENIAKIIDFHY-GKTGIIYCLSRKNCEKVAKDLCTKYHVKATHYHAGMAPDDRIRVQRE 982
Query: 277 ----------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G GK S
Sbjct: 983 WQDGKHNVIVATIAFGMGIDKPDVRFVIHHTIPKSLEGYYQETGRAGRDGKRS 1035
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 43 IIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG 92
++ +YPWS V++ L+ FNL FRPNQL AIN L KDA ++MPTG
Sbjct: 685 VVEGMNYPWSADVKAALRDIFNLRGFRPNQLEAINATLSGKDAFVLMPTG 734
>gi|326471382|gb|EGD95391.1| ATP-dependent DNA helicase [Trichophyton tonsurans CBS 112818]
Length = 1556
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 178/347 (51%), Gaps = 78/347 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT----------------- 91
+PWS V+S ++ F L FRPNQL AIN L KD ++MPT
Sbjct: 687 HPWSKDVKSAMRETFKLRGFRPNQLEAINSTLSGKDTFVLMPTGGGKSLCYQLPSIIRTG 746
Query: 92 ----------------------------------GKLLKKKKICLMTESSSLK------L 111
G + K ++ +M SL+ L
Sbjct: 747 KTKGVTIVISPLLSLMQDQVAHLQKLNVKAFLINGDVSKDERATIMNNLRSLRADSLIQL 806
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PE LAKS++ + L +++ LARI IDE HC S WGHDFRPDY L ++ +P
Sbjct: 807 LYVTPEMLAKSRAMESVLLQLHSNDKLARIVIDEAHCVSQWGHDFRPDYTALGTMREKYP 866
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP++ LTATAT V +DV L+++ C V FNRPNL YEVR K AQ D L ++AD
Sbjct: 867 GVPVMALTATATPNVQVDVIHNLRMKGCEVFTQSFNRPNLTYEVRKKGRAQ-DALKDIAD 925
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN-------------- 276
L++ + ++ GIIY S K CE + +L ++ G++ + YHA L S
Sbjct: 926 LITNDYPDKCGIIYCLSRKTCERVAMQLSSKFGVKAAHYHAGLSSKDRFTVQRDWQSGKH 985
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDK NVRFVIHH + +S+E +YQ + G GK S
Sbjct: 986 NVIVATIAFGMGIDKANVRFVIHHSIPQSLEGYYQETGRAGRDGKRS 1032
>gi|67523261|ref|XP_659691.1| hypothetical protein AN2087.2 [Aspergillus nidulans FGSC A4]
gi|8101762|gb|AAF72650.1|AF259396_1 RecQ helicase MUSN [Emericella nidulans]
gi|40745763|gb|EAA64919.1| hypothetical protein AN2087.2 [Aspergillus nidulans FGSC A4]
gi|259487457|tpe|CBF86151.1| TPA: Putative uncharacterized proteinRecQ helicase MUSN ;
[Source:UniProtKB/TrEMBL;Acc:Q9P8H3] [Aspergillus
nidulans FGSC A4]
Length = 1534
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 127/349 (36%), Positives = 186/349 (53%), Gaps = 49/349 (14%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS- 61
+PW+ V+ LK +F+L FRPNQL AI+ L KD ++MPT S ++ SV+ S
Sbjct: 682 HPWTKDVKIALKERFHLRGFRPNQLEAIDSTLSGKDTFVLMPTGGGKSLCYQLPSVISSG 741
Query: 62 ----------------KFNLTDFRPNQLAA--INIALLKKDAIIIMPTGKLLKKKKICLM 103
+ ++ R N++ A IN ++ IM T +
Sbjct: 742 STRGVTLVISPLLSLMQDQVSHLRQNKIKAYLINGDTPSEERQWIMST--------LSSH 793
Query: 104 TESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL 163
+ ++LLY++PE ++KS + +++K+ LAR+ IDE HC S WGHDFRPDY+ +
Sbjct: 794 NPETHIELLYITPEMISKSHALTDRIEKLCSIQKLARVVIDEAHCVSQWGHDFRPDYKQI 853
Query: 164 SILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK 223
+ P VP++ LTATAT V +DV L+++ C V FNRPNL YEVR K
Sbjct: 854 GAFRARIPGVPLMALTATATENVKVDVIHNLRMQGCEVFTQSFNRPNLTYEVRRK-GKHA 912
Query: 224 DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELR-NRGLRVSAYHAKLESNV----- 277
+ LD +AD + +RN+ GI+Y S CE + E LR N ++ YHA L++
Sbjct: 913 ELLDSIADTIKSTYRNKCGIVYCLSRNTCEKVAEALRTNYSIKAEHYHAGLDAETRARTQ 972
Query: 278 -------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G
Sbjct: 973 QRWQAGDVHVIVATIAFGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAG 1021
>gi|406866234|gb|EKD19274.1| QDE3-like protein [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 1765
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 136/356 (38%), Positives = 190/356 (53%), Gaps = 47/356 (13%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKF 63
++PWS V++VL+ +F L FR +Q+ AIN L +DA ++MPT + L +
Sbjct: 880 HHPWSKDVKTVLRERFKLKGFRRHQIDAINATLSGQDAFVLMPTG--GGKSLCYQLPAVV 937
Query: 64 NLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKK-KKICLMTESSS-------------- 108
N R L + L D + + L+KK + L ++S S
Sbjct: 938 NSGKTRGVTLVISPLLSLMNDQVQHL----LVKKIQAATLNSDSPSEVKSDIWSALREEN 993
Query: 109 ----LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLS 164
++LLY++PE + KS + L ++YK G LARI IDE HC S WGHDFRPDY L
Sbjct: 994 PEQYIQLLYITPEMINKSPPMIAALTRLYKKGKLARIVIDEAHCVSQWGHDFRPDYVALG 1053
Query: 165 ILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQ-- 222
L++ FP VP++ LTATAT+ V DV L ++ C V FNRPNL+YEVR+K
Sbjct: 1054 RLRSDFPRVPLMALTATATSNVKDDVMTNLGMKGCPVFTQSFNRPNLYYEVRLKRGKGVL 1113
Query: 223 KDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN----- 276
+ E+ +L+ ++NQ+GIIY S K CEDL ++L N LR YHA +
Sbjct: 1114 AKMVTEIVELVRDTYKNQTGIIYALSQKGCEDLAQKLANEHNLRAYHYHAGMNREDKATV 1173
Query: 277 -------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIH + KS+E +YQ + G GK S
Sbjct: 1174 LQDWQTGKIQVVVATIAFGMGIDKPDVRFVIHSSVPKSLEGYYQETGRAGRDGKRS 1229
>gi|310790854|gb|EFQ26387.1| RecQ family ATP-dependent DNA helicase [Glomerella graminicola
M1.001]
Length = 1602
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 128/341 (37%), Positives = 177/341 (51%), Gaps = 79/341 (23%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAII----------------IMPTG 92
+PWS VR LK +F + FR NQL AIN L KDA + I+ +G
Sbjct: 695 HPWSADVRKALKDRFRMRGFRSNQLEAINATLAGKDAFVLMPTGGGKSLCYQLPAIISSG 754
Query: 93 KL-----------------------LKKKKICLMTESSS------------------LKL 111
K L + + L E+++ ++L
Sbjct: 755 KTRGITIVVSPLLSLMQDQVDHMSALNIQAVSLNGETNAQKRNQIFSSFKERSPELYIQL 814
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PE L S++FM L +Y LARI IDE HC S WGHDFRPDY+ L L+ FP
Sbjct: 815 LYVTPEMLNNSQNFMRALTNLYSNKRLARIVIDEAHCVSQWGHDFRPDYKALGKLRHQFP 874
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VPI+ LTATAT V++D++ L ++ C V FNRPNL YEVR K +K+ + ++AD
Sbjct: 875 TVPIIALTATATQNVIVDIKHNLGMDSCQVFSQSFNRPNLTYEVRRK---EKELIHKIAD 931
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN-------------- 276
L+ ++ Q GIIYT S K E + E+LR++ ++ S YHA++
Sbjct: 932 LIMSKYNGQCGIIYTLSRKTSEQVAEKLRSQYNIKASHYHAQMTPEDRIRVQREWQADKI 991
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G
Sbjct: 992 HVVVATIAFGMGIDKPDVRFVIHHSVPKSLEGYYQETGRAG 1032
>gi|296418818|ref|XP_002839022.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635016|emb|CAZ83213.1| unnamed protein product [Tuber melanosporum]
Length = 527
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 130/336 (38%), Positives = 181/336 (53%), Gaps = 37/336 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
+ WS V L+ +FNL FR NQL AIN L D ++MPT Y +RS
Sbjct: 8 HKWSRDVADALRRRFNLKGFRNNQLEAINATLAGDDVFVLMPTGGGKSLIYQLPAIIRSG 67
Query: 58 -------VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLK 110
V+ +L + + L +NI + I +LL E ++
Sbjct: 68 KTHGVTIVVSPLLSLMQDQVDHLQKLNIMAFFINGEINEDQRRLLYDSLYHEDVEEM-VQ 126
Query: 111 LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170
LLY++PE +AKS + L +++ G LARI +DE HC S WGHDFRPDY+ L LK+ +
Sbjct: 127 LLYITPEMIAKSDKMVNTLLSLHRRGKLARIVVDEAHCVSQWGHDFRPDYKTLGNLKSKY 186
Query: 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA 230
P VP + LTATAT KV +DVQ L + FNRPNL Y+V K K+ LD++
Sbjct: 187 PGVPWIALTATATEKVRMDVQLNLDMPRAKTFTQSFNRPNLNYQVSPKT---KNVLDDIV 243
Query: 231 DLMSR-RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------- 276
++ R + N++GIIY S + CE E+LR RG+R +HAKL+++
Sbjct: 244 EICRRPEYLNKTGIIYCLSRQNCEQTAEKLRTRGIRAQHFHAKLQADEKIRLQKEWQARR 303
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIHH + KS+E +YQ
Sbjct: 304 FNVIVATIAFGMGIDKPDVRFVIHHTIPKSLEGYYQ 339
>gi|323303418|gb|EGA57213.1| Sgs1p [Saccharomyces cerevisiae FostersB]
Length = 1423
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 126/345 (36%), Positives = 195/345 (56%), Gaps = 31/345 (8%)
Query: 3 PNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLK 60
P YPWSD V L F L FRPNQL A+N L KD ++MPT S ++ +V+K
Sbjct: 658 PTYPWSDEVLYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVK 717
Query: 61 S-KFNLTDFRPNQLAAINI----ALLKKDAIIIM--PTGKLLKKKKICLMTESSSLKLLY 113
S K + T + L ++ LL K+ M G ++++ + + L L+Y
Sbjct: 718 SGKTHGTTIVISPLISLMQDQVEHLLNKNIKXSMFSSRGTAEQRRQTFNLFINGLLDLVY 777
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
+SPE ++ S+ + ++Y G LARI +DE HC S+WGHDFRPDY+ L K +PD+
Sbjct: 778 ISPEMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDI 837
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
P++ LTATA+ +V +D+ L++++ V +K FNR NL+YEV K K+ + E+ D +
Sbjct: 838 PMIALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK---TKNTIFEICDAV 894
Query: 234 SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------- 276
RF+NQ+GIIY S K CE +++ G++ + YHA +E +
Sbjct: 895 KSRFKNQTGIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVI 954
Query: 277 -VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GIDKP+VRFV H + +++E +YQ + G G +S+
Sbjct: 955 CATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSY 999
>gi|367019938|ref|XP_003659254.1| hypothetical protein MYCTH_2296042 [Myceliophthora thermophila ATCC
42464]
gi|347006521|gb|AEO54009.1| hypothetical protein MYCTH_2296042 [Myceliophthora thermophila ATCC
42464]
Length = 1843
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 181/345 (52%), Gaps = 43/345 (12%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
+PWS VR LK +F +T FR NQL AIN L KDA ++MPT Y V S
Sbjct: 896 FPWSADVRRALKDRFRMTGFRHNQLEAINATLAGKDAFVLMPTGGGKSLCYQLPAMVNSG 955
Query: 58 -------VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE---SS 107
V+ +L + + L +NI + I L+ + +
Sbjct: 956 KTRGVTLVVSPLLSLMNDQVAHLKRLNILAATFNGTI----SAALRNHILGAFHQPHPEH 1011
Query: 108 SLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
++LLYV+PE L S +F +Q +Y+ LARI IDE HC S WGHDFRPDY+ L +
Sbjct: 1012 HIQLLYVTPEMLTNSPAFRNGVQLLYRKNKLARIVIDEAHCVSHWGHDFRPDYKALGEFR 1071
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLD 227
FP VP++ LTATAT VM D++ L +E+C V FNRPN++Y+V K Q +
Sbjct: 1072 RGFPGVPVMALTATATKNVMADIKHNLDMENCEVFTQSFNRPNIYYQVIYK---QSRFIR 1128
Query: 228 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN---------- 276
+ +L++ RF Q GI+YT S K E + L ++ G++ YHA+++
Sbjct: 1129 GMGELINERFPGQCGIVYTLSRKSAEGTAQALVSKHGIKARYYHAQMDPESKLEVQEQWQ 1188
Query: 277 --------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L KS+E +YQ + G
Sbjct: 1189 AGEIHVVVATIAFGMGIDKPDVRFVIHQSLPKSLEGYYQETGRAG 1233
>gi|171687593|ref|XP_001908737.1| hypothetical protein [Podospora anserina S mat+]
gi|170943758|emb|CAP69410.1| unnamed protein product [Podospora anserina S mat+]
Length = 1692
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 132/347 (38%), Positives = 183/347 (52%), Gaps = 48/347 (13%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
+PWS V LK +F L +FR NQL AIN L +DA ++MPT Y V+S
Sbjct: 809 FPWSADVLRALKDRFRLVNFRHNQLPAINCTLAGEDAFVMMPTGGGKSLCYQLPAVVQSG 868
Query: 58 -------VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLM------T 104
V+ +L + + INI + + G L K ++ T
Sbjct: 869 KTKGVTIVVSPLLSLMSDQVEHMERINI-------LAVAFNGNLAAAHKRHILGKLNHET 921
Query: 105 ESSSLKLLYVSPEKLAKSKSFMTKLQKM-YKAGCLARIAIDEVHCCSSWGHDFRPDYQYL 163
+ +LLYV+PE LA + + + KM ++ G AR+ IDE HC S WGHDFRPDY+ L
Sbjct: 922 PENFYQLLYVTPEMLANENTQIRRALKMLHQRGKFARLVIDEAHCVSQWGHDFRPDYKAL 981
Query: 164 SILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK 223
+ FP VP++ LTA+AT V DVQ L + C + FNRPNL+YEV KP
Sbjct: 982 GEFRKQFPGVPVMALTASATESVRKDVQHQLGMTGCKLFTQSFNRPNLYYEVFPKPPT-- 1039
Query: 224 DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN------ 276
+D L L++ R++NQ+GIIYTTS CE + +L + G++ + YHA L+
Sbjct: 1040 -YVDPLGSLIATRYKNQTGIIYTTSRASCEGIAGKLVEKYGIKAAPYHAGLDDRPEIQRK 1098
Query: 277 ----------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L K+ME +YQ + G
Sbjct: 1099 WQDDEIHVIVATIAFGMGIDKPDVRFVIHVSLPKTMEGYYQETGRAG 1145
>gi|71017581|ref|XP_759021.1| hypothetical protein UM02874.1 [Ustilago maydis 521]
gi|46098743|gb|EAK83976.1| hypothetical protein UM02874.1 [Ustilago maydis 521]
Length = 1291
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 127/345 (36%), Positives = 185/345 (53%), Gaps = 39/345 (11%)
Query: 2 LPNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--------- 52
+P+YPW+ +V VLK F L FR NQL AIN L +D ++MPT S
Sbjct: 394 MPHYPWTTQVGYVLKKFFKLKRFRRNQLEAINGTLSGRDVFVLMPTGGGKSLCYQLPACI 453
Query: 53 --DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTES---- 106
D+ V L +Q+ + L++KD + TG + + +
Sbjct: 454 DTDKATGVSIVISPLLSLIEDQV----LDLVRKDVPAVKLTGDMSANDRRDAFNTARDRV 509
Query: 107 SSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
SL+LLYV+PE + +S M L +Y LARI +DE HC S WGHDFRP Y L L
Sbjct: 510 GSLRLLYVTPEFIRQSNQAMELLDLLYSQKRLARIVVDEAHCVSQWGHDFRPHYTELGAL 569
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
+ +P VPI+ LTATA +V+ DV+ L++ + + + + FNRPNL Y+VR KP ++ +
Sbjct: 570 RDKYPQVPIMALTATANARVIKDVKSCLKMRNVLQLSSSFNRPNLEYQVRKKPKSK--LI 627
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------- 276
DE+A + +++ GI+Y S + CE + ++L+ G+ YHAKL +
Sbjct: 628 DEIASFILTSHKDECGIVYCFSRESCETVADDLKKHGITAHHYHAKLGKDDRSKVQQRWK 687
Query: 277 --------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIHH L KS+E +YQ + G
Sbjct: 688 NGEYKVIVATIAFGMGIDKPDVRFVIHHSLPKSLEGYYQETGRAG 732
>gi|403174685|ref|XP_003333617.2| hypothetical protein PGTG_15039 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375171080|gb|EFP89198.2| hypothetical protein PGTG_15039 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 796
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 135/371 (36%), Positives = 194/371 (52%), Gaps = 62/371 (16%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
+ W+ + +K + + FR NQ A N L +D ++IMPT S ++ +VL
Sbjct: 89 WSWTQALHETMKKIWGIESFRLNQEAVCNAVLSNRDVLVIMPTGGGKSLTYQLPAVLSEG 148
Query: 63 FNLT-------------DFRPNQLAA--INIALLKKDAIIIMP-------------TGKL 94
+L + + A +N + ++DA +IM K
Sbjct: 149 TSLVISPLVALMADQNMHLKEAGVPAEMLNASTSRQDAALIMKRLLHSVVDQKPKRGSKS 208
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
K K+ + + +KL YV+PEK+AKSK+F++ LQKMY AG L+R+ IDE HCCSS GH
Sbjct: 209 SKGKEKAHEDDLAPIKLCYVTPEKIAKSKTFVSTLQKMYGAGRLSRVIIDEAHCCSSMGH 268
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQI-----------EDCVVIK 203
DFRPDY+ LSILKT+FPD PI+ LTAT +VM+DV K+L++ V+
Sbjct: 269 DFRPDYKQLSILKTLFPDTPIVALTATCPPRVMVDVLKILKLGPITNADKARPTGTVLFT 328
Query: 204 APFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREEL---R 260
+P +RPNL Y+V KPA D +D++ + + + GIIYT S K+ + + L
Sbjct: 329 SPLSRPNLHYQVLKKPATNTDLIDQIVEWIEQNHSGSQGIIYTLSQKDTTTVAQGLISQS 388
Query: 261 NRGLRVSAYHAKL-------------ESNVSI-----AFGLGIDKPNVRFVIHHCLSKSM 302
N + YHA L E ++ + AFG+GID P+VRFVIHH L KSM
Sbjct: 389 NGRITTGIYHASLSDSHKHQVHTDWREGSIQVVCATTAFGMGIDAPHVRFVIHHTLPKSM 448
Query: 303 ENFYQVSIAFG 313
E +YQ S G
Sbjct: 449 EGYYQESGRAG 459
>gi|410075411|ref|XP_003955288.1| hypothetical protein KAFR_0A07190 [Kazachstania africana CBS 2517]
gi|372461870|emb|CCF56153.1| hypothetical protein KAFR_0A07190 [Kazachstania africana CBS 2517]
Length = 1318
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 191/381 (50%), Gaps = 81/381 (21%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRP 70
V+ + FN DF + L I I+ + K YPWS+ V L F L FRP
Sbjct: 503 VKREITDAFNKDDFDDSLLEDIEISRVDKKR------KYPWSEEVEERLHGVFKLPGFRP 556
Query: 71 NQLAAINIALLKKDAIIIMPT--GK----------------------------------- 93
NQ A+N L KD ++MPT GK
Sbjct: 557 NQEEAVNATLDGKDVFVLMPTGGGKSLCYQLPAIVKSGRTRGTTIVISPLISLMQDQVEH 616
Query: 94 -LLKKKKICLMTESSS---------------LKLLYVSPEKLAKSKSFMTKLQKMYKAGC 137
L K K + + + L ++Y+SPE ++ S+ + K+Y G
Sbjct: 617 LLAKNIKASMFSSKGTSEERRQTFNLFIHGLLDVVYISPEMISASQQCKRAIDKLYTDGN 676
Query: 138 LARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIE 197
LAR+ +DE HC S+WGHDFRPDY+ L + K +P +P++ LTATA+ +V++D+ L ++
Sbjct: 677 LARVVVDEAHCVSNWGHDFRPDYKELKMFKVEYPTIPMMALTATASKQVIMDIIHNLGLK 736
Query: 198 DCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLRE 257
+ V +K FNR NL+YEV+ K KD ++ + D++ RFRNQ+GIIY S CE +
Sbjct: 737 NEVFLKQSFNRTNLYYEVKKK---DKDTMNNICDMIKNRFRNQTGIIYCHSKNSCEQVSS 793
Query: 258 ELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDKPNVRFVIHHCLS 299
+L+ + +R + YHA +E ++AFG+GIDKP+VRFVIH+ +
Sbjct: 794 QLQRKNIRCAYYHAGMEPEERSAVQKAWQEDEIQVICATVAFGMGIDKPDVRFVIHYTVP 853
Query: 300 KSMENFYQVSIAFGL-GKHSF 319
+++E +YQ + G G +S+
Sbjct: 854 RTLEGYYQETGRAGRDGNYSY 874
>gi|388581963|gb|EIM22269.1| ATP-dependent DNA helicase [Wallemia sebi CBS 633.66]
Length = 1115
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 133/359 (37%), Positives = 187/359 (52%), Gaps = 57/359 (15%)
Query: 3 PNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--------------D 48
P YPWS V V+ F L FR NQ AI+ L KD ++MPT D
Sbjct: 353 PRYPWSRDVEKVMHDMFKLNAFRKNQREAIDATLDAKDVFVLMPTGGGKSVCYQIPACVD 412
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINI---------ALLKKDAIIIMPTGKLLKKKK 99
+ V V+ +L + QL + ++ AL K AI L + K
Sbjct: 413 LGKTHGVSIVISPLLSLIQDQVQQLVSKDVPSYAYSGGTALADKRAI----QDDLRRPKP 468
Query: 100 ICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPD 159
I +LLYV+PE L +S +F L++++ LAR +DE HC S WGHDFRPD
Sbjct: 469 IT--------RLLYVTPEMLGQSNAFKDILKQLHAKDQLARFVVDEAHCVSQWGHDFRPD 520
Query: 160 YQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKP 219
Y L L+ FP VP + LTATA +V D++ L+++ CV +K+ FNR NLFYE IKP
Sbjct: 521 YTNLGQLRDDFPGVPFMALTATANERVKSDIKNSLRMKGCVELKSSFNRKNLFYE--IKP 578
Query: 220 AAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN-- 276
K ++ +L++ +FR Q+GIIY +S + CED+ +LR+ GL YHA L +
Sbjct: 579 KNGKTVYADIQNLINNKFRGQTGIIYCSSKRACEDVASKLRHEYGLPAQHYHAGLSRDDR 638
Query: 277 ----------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
++AFG+GIDKP+VRFVIH + +S+E +YQ + G G+HS
Sbjct: 639 TKIQINWQKNRFLIICATVAFGMGIDKPDVRFVIHFSMPQSLEGYYQETGRAGRDGEHS 697
>gi|398390493|ref|XP_003848707.1| ATP-dependent DNA helicase RecQ [Zymoseptoria tritici IPO323]
gi|339468582|gb|EGP83683.1| ATP-dependent DNA helicase RecQ [Zymoseptoria tritici IPO323]
Length = 1455
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 133/349 (38%), Positives = 182/349 (52%), Gaps = 47/349 (13%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS 57
++PWS V+ LK KF L FR NQ+ AIN L KD ++MPT Y VRS
Sbjct: 575 SFPWSTDVKEALKEKFRLKGFRENQIDAINATLAGKDTFVLMPTGGGKSLCYQLPALVRS 634
Query: 58 --------VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS- 108
V+ +L + + L +NI A ++ + + ++ LM S
Sbjct: 635 GRTRGVTVVISPLVSLMEDQVQHLQKLNI-----QAFLV--NSETTQDQRSALMDSLYSA 687
Query: 109 -----LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL 163
+ LLYV+PE LAKS ++ Q +++ LAR IDE HC S WGHDFRPDY+ L
Sbjct: 688 DVENLVHLLYVTPEMLAKSTKMVSTFQWLHRKNRLARFVIDEAHCVSQWGHDFRPDYKLL 747
Query: 164 SILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK 223
+ F VP++ LTATAT V D L IE C V + FNR NL+YEVR K +
Sbjct: 748 GEFRRHFMGVPVMALTATATENVRADTIHNLSIEGCEVFTSSFNRRNLYYEVRKKAKGKG 807
Query: 224 DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN------ 276
D ++ +A+L+ Q+GIIY S K+CE + E LR + ++ YHA L+S
Sbjct: 808 D-IESIANLIKEDHHKQTGIIYCFSRKDCEGMAEALRKQHSIKAHHYHAGLKSEEKSQVQ 866
Query: 277 ------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDK NVRFVIHH + KS+E +YQ + G
Sbjct: 867 KKWQAGTYHVIVATIAFGMGIDKGNVRFVIHHTIPKSLEGYYQETGRAG 915
>gi|396484512|ref|XP_003841962.1| hypothetical protein LEMA_P098920.1 [Leptosphaeria maculans JN3]
gi|312218537|emb|CBX98483.1| hypothetical protein LEMA_P098920.1 [Leptosphaeria maculans JN3]
Length = 1753
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 131/348 (37%), Positives = 184/348 (52%), Gaps = 36/348 (10%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP-----------WS 52
++PWS +R+ L +F L FRP QL AIN L + ++MPT S
Sbjct: 820 DFPWSQDLRNALVRRFGLRGFRPGQLEAINTTLGGEHCFVLMPTGGGKSLCYQLPSVITS 879
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS---L 109
+ R V L +Q+AA + +I + K + + E +
Sbjct: 880 GKTRGVTIVVSPLLSLMEDQVAACEQRFGMQAFLINGESTAAQKNMIMDALKERDPQKFI 939
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169
++LYV+PE L+K++ + LQ+++ G LARI IDE HC S WGHDFRPDY+ L +
Sbjct: 940 QILYVTPEMLSKNQRMVGTLQQLHSRGHLARIVIDEAHCVSQWGHDFRPDYKALGDVVRQ 999
Query: 170 FPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDEL 229
FP VP++ LTATAT+ V DV L I+ C FNRPNL YEV K K ++ +
Sbjct: 1000 FPGVPVIALTATATSLVRTDVVANLGIQGCRQFSQSFNRPNLSYEVLPK---SKGVVNSI 1056
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------- 276
A+L+ R+ +SGIIY S K CED+ ++L + GL+ YHA +ES
Sbjct: 1057 AELIKDRYSKKSGIIYCLSRKSCEDVAKKLSDLGLKAFHYHAGMESAERSAVQRKWQSNE 1116
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDK +VR+VIHH L KS+E +YQ + G GK S
Sbjct: 1117 YHVIVATIAFGMGIDKADVRYVIHHTLPKSLEGYYQETGRAGRDGKRS 1164
>gi|261195180|ref|XP_002623994.1| RecQ family helicase MusN [Ajellomyces dermatitidis SLH14081]
gi|239587866|gb|EEQ70509.1| RecQ family helicase MusN [Ajellomyces dermatitidis SLH14081]
Length = 1562
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 184/343 (53%), Gaps = 37/343 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP-----------WSD 53
+PWS V+ L+ +FNL FRPNQL AIN L KD ++MPT S
Sbjct: 675 HPWSKDVKHALRHRFNLPGFRPNQLEAINATLSGKDVFVLMPTGGGKSLCYQLPSVIQSG 734
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS----L 109
+ + V L +Q+A ++ LK A ++ +K +I +++ +
Sbjct: 735 KTKGVTVVISPLLSLMEDQVA--HLRDLKIQASVLNGDASKEEKMEIYGALRNANVEKLI 792
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169
+LLYV+PE + K+ + + L ++ LARI IDE HC S WGHDFRPDY+ L +T
Sbjct: 793 QLLYVTPEMVNKNGALLDILSHLHSRCKLARIVIDEAHCVSQWGHDFRPDYKELGNTRTK 852
Query: 170 FPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDEL 229
FP +P++ LTATAT V +DV L + D V FNRPNL YEVR KP + + +
Sbjct: 853 FPGIPLMALTATATENVKVDVIHNLGMHDAEVFVQSFNRPNLIYEVRRKPKG-TNVVASI 911
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRN-RGLRVSAYHAKLESN------------ 276
A+ + + ++GIIY S + CE + E+LR+ ++ YHA L SN
Sbjct: 912 AETIKGSYSGKAGIIYCLSRQSCERVAEQLRDTHKIKAVHYHAGLPSNDRISIQRDWQRG 971
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G
Sbjct: 972 KYNVIVATIAFGMGIDKPDVRFVIHHSMPKSLEGYYQETGRAG 1014
>gi|239610645|gb|EEQ87632.1| RecQ family helicase MusN [Ajellomyces dermatitidis ER-3]
gi|327348921|gb|EGE77778.1| RecQ family helicase MusN [Ajellomyces dermatitidis ATCC 18188]
Length = 1562
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 184/343 (53%), Gaps = 37/343 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP-----------WSD 53
+PWS V+ L+ +FNL FRPNQL AIN L KD ++MPT S
Sbjct: 675 HPWSKDVKHALRHRFNLPGFRPNQLEAINATLSGKDVFVLMPTGGGKSLCYQLPSVIQSG 734
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS----L 109
+ + V L +Q+A ++ LK A ++ +K +I +++ +
Sbjct: 735 KTKGVTVVISPLLSLMEDQVA--HLRDLKIQASVLNGDASKEEKMEIYGALRNANVEKLI 792
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169
+LLYV+PE + K+ + + L ++ LARI IDE HC S WGHDFRPDY+ L +T
Sbjct: 793 QLLYVTPEMVNKNGALLDILSHLHSRCKLARIVIDEAHCVSQWGHDFRPDYKELGNTRTK 852
Query: 170 FPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDEL 229
FP +P++ LTATAT V +DV L + D V FNRPNL YEVR KP + + +
Sbjct: 853 FPGIPLMALTATATENVKVDVIHNLGMHDAEVFVQSFNRPNLIYEVRRKPKG-TNVVASI 911
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRN-RGLRVSAYHAKLESN------------ 276
A+ + + ++GIIY S + CE + E+LR+ ++ YHA L SN
Sbjct: 912 AETIKGSYSGKAGIIYCLSRQSCERVAEQLRDTHKIKAVHYHAGLPSNDRISIQRDWQRG 971
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G
Sbjct: 972 KYNVIVATIAFGMGIDKPDVRFVIHHSMPKSLEGYYQETGRAG 1014
>gi|154324014|ref|XP_001561321.1| hypothetical protein BC1G_00406 [Botryotinia fuckeliana B05.10]
Length = 1677
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/342 (36%), Positives = 175/342 (51%), Gaps = 77/342 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL----------- 95
+ WS+ V+ LK +F L FR NQL AIN L +DA I+MPT GK L
Sbjct: 794 HAWSNDVKKALKDRFRLKGFRHNQLEAINATLAGRDAFILMPTGGGKSLCYQLPAIVQSG 853
Query: 96 KKKKICLM--------------------------TESSS------------------LKL 111
K K + ++ +ES+ ++L
Sbjct: 854 KTKGVTIVVSPLLALMHDQVDHLHKLRIQAYLFNSESTQETRQQLFNGLNERKPEQFVEL 913
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PE + KS + +KL +Y LARI IDE HC S WGHDFRPDY+ L L+ +P
Sbjct: 914 LYVTPEMINKSNAIQSKLDDLYAKKRLARIVIDEAHCVSQWGHDFRPDYKNLHELRGRYP 973
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDC--LDEL 229
VP + LTATAT +V DV L +++C +K FNRPN++YEVR K E+
Sbjct: 974 GVPFIALTATATERVKKDVIHNLGMQNCEQLKQSFNRPNIYYEVRRKTGKGSTAAMFSEI 1033
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------- 276
++S ++NQSGIIY S CE++ ++LR +G+R +HA +
Sbjct: 1034 TKMLSVDYKNQSGIIYCLSRDNCEEVAKKLREQGIRAHHFHAHMTPEEKKDTQHKWQIGS 1093
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDK NVRFVIH+CL K++E +YQ + G
Sbjct: 1094 IQVVVATIAFGMGIDKQNVRFVIHYCLPKTLEGYYQETGRAG 1135
>gi|347829887|emb|CCD45584.1| hypothetical protein [Botryotinia fuckeliana]
Length = 1775
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/342 (36%), Positives = 175/342 (51%), Gaps = 77/342 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL----------- 95
+ WS+ V+ LK +F L FR NQL AIN L +DA I+MPT GK L
Sbjct: 891 HAWSNDVKKALKDRFRLKGFRHNQLEAINATLAGRDAFILMPTGGGKSLCYQLPAIVQSG 950
Query: 96 KKKKICLM--------------------------TESSS------------------LKL 111
K K + ++ +ES+ ++L
Sbjct: 951 KTKGVTIVVSPLLALMHDQVDHLHKLRIQAYLFNSESTQETRQQLFNGLNERKPEQFVEL 1010
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PE + KS + +KL +Y LARI IDE HC S WGHDFRPDY+ L L+ +P
Sbjct: 1011 LYVTPEMINKSNAIQSKLDDLYAKKRLARIVIDEAHCVSQWGHDFRPDYKNLHELRGRYP 1070
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDC--LDEL 229
VP + LTATAT +V DV L +++C +K FNRPN++YEVR K E+
Sbjct: 1071 GVPFIALTATATERVKKDVIHNLGMQNCEQLKQSFNRPNIYYEVRRKTGKGSTAAMFSEI 1130
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------- 276
++S ++NQSGIIY S CE++ ++LR +G+R +HA +
Sbjct: 1131 TKMLSVDYKNQSGIIYCLSRDNCEEVAKKLREQGIRAHHFHAHMTPEEKKDTQHRWQIGS 1190
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDK NVRFVIH+CL K++E +YQ + G
Sbjct: 1191 IQVVVATIAFGMGIDKQNVRFVIHYCLPKTLEGYYQETGRAG 1232
>gi|241999220|ref|XP_002434253.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
gi|215496012|gb|EEC05653.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
Length = 556
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 130/335 (38%), Positives = 182/335 (54%), Gaps = 29/335 (8%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
+P S +RS S F L FR NQL AIN ALL +D I+MPT S ++ +V+
Sbjct: 11 GFPHSAEMRSKFGSVFGLKQFRLNQLEAINAALLGEDCFILMPTGGGKSLCYQLPAVVSE 70
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC-----LMTESSSLKLLYVSP 116
+ + L ++ ++K + +P L L + L+LLYV+P
Sbjct: 71 GVTVV---ISPLKSLIYDQVQKLGSLDVPANHLSGDSDDFSVYSDLRSTQPRLRLLYVTP 127
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK++ S + L +++ G L+R IDE HC S WGHDFRPDY+ LS+L+ F VP++
Sbjct: 128 EKVSASGRLLDALSRLHANGRLSRFVIDEAHCVSQWGHDFRPDYKKLSVLREKFSGVPMM 187
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATAT +V D+ L + D FNRPNL YE+R+K + + E+ +++ +
Sbjct: 188 ALTATATPRVRTDILHQLGMRDPKWFLQSFNRPNLRYEIRLK-SGKVGTAREVLEVVEGK 246
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
F QSGIIY S KEC+DL EEL G+ AYHA L+ +
Sbjct: 247 FARQSGIIYCFSRKECDDLAEELSKNGVPAVAYHAGLDDPKRNAVQQRWIDDKVRVVCAT 306
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
IAFG+G+DKP+VRFV+H+ L KSME FYQ S G
Sbjct: 307 IAFGMGVDKPDVRFVVHYTLPKSMEGFYQESGRAG 341
>gi|380491813|emb|CCF35054.1| RecQ family ATP-dependent DNA helicase [Colletotrichum higginsianum]
Length = 1601
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 177/341 (51%), Gaps = 79/341 (23%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAII----------------IMPTG 92
+ WS VR LK +F + FR NQL AIN L KDA + I+ +G
Sbjct: 690 HSWSADVRKALKDRFRMRGFRSNQLEAINATLAGKDAFVLMPTGGGKSLCYQLPAIISSG 749
Query: 93 KL-----------------------LKKKKICLMTESSS------------------LKL 111
K L + + L E+++ ++L
Sbjct: 750 KTRGITIVVSPLLSLMQDQVDHMSALNIQAVSLNGETNAQKRNQIFSSFKERSPELYIQL 809
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PE L S++FM L +Y LARI IDE HC S WGHDFRPDY+ L L+ FP
Sbjct: 810 LYVTPEMLNNSQNFMRALTNLYVNKRLARIVIDEAHCVSQWGHDFRPDYKALGKLRHQFP 869
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VPI+ LTATAT V++D++ L ++ C V FNRPNL YEVR K +K+ + ++AD
Sbjct: 870 TVPIIALTATATQNVIVDIKHNLGMDSCQVFSQSFNRPNLTYEVRRK---EKELIHKIAD 926
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN-------------- 276
L+ ++ Q GIIYT S K E + E+LR++ G++ + YHA++
Sbjct: 927 LIMSKYDGQCGIIYTLSRKTSEQVAEKLRSQYGVKANHYHAQMTPEDRIRVQREWQADKI 986
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G
Sbjct: 987 HVVVATIAFGMGIDKPDVRFVIHHSVPKSLEGYYQETGRAG 1027
>gi|345495259|ref|XP_001605753.2| PREDICTED: Bloom syndrome protein homolog [Nasonia vitripennis]
Length = 1426
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 127/340 (37%), Positives = 184/340 (54%), Gaps = 39/340 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YPW 51
YP S + +V + KF L FRPNQL AIN A+ D I+MPT P
Sbjct: 660 YPHSREMMNVFRQKFGLYSFRPNQLQAINAAICGYDCFILMPTGGGKSLCYQLPALLTPG 719
Query: 52 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
V S LKS L + +L +++I+ + + + + ++ L + SLKL
Sbjct: 720 VTIVVSPLKS---LIIDQVQKLISLDISAAHLSSSVTDEQAQSVYRE---LAKKEPSLKL 773
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LY++PEK++ S+ L+ +Y+ G LAR IDE HC S WGHDFRPDY+ L +L+ +P
Sbjct: 774 LYLTPEKISASQKIGDALRALYERGMLARFVIDEAHCVSQWGHDFRPDYKKLQLLRKNYP 833
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP + LTATAT +V D+ L + + + FNRPNL Y V K K+ +E+ +
Sbjct: 834 KVPTMALTATATPRVRTDILHQLGMTNPKWFMSSFNRPNLHYVVTSKKG--KNSTEEIIE 891
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--------------- 276
++ R FRN GI+Y S K+C+ + +++ G++ +YHA L +
Sbjct: 892 MIKRDFRNDCGIVYCLSRKDCDSFADTMKSNGIKALSYHAGLSDHQRLEIQGRWISEQIK 951
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKPNVRFVIH L KS+E +YQ S G
Sbjct: 952 VVCATIAFGMGIDKPNVRFVIHATLPKSIEGYYQESGRAG 991
>gi|325093139|gb|EGC46449.1| RecQ family helicase MusN [Ajellomyces capsulatus H88]
Length = 1559
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 133/349 (38%), Positives = 187/349 (53%), Gaps = 38/349 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
+PWS V+ L +F L FRPNQL AIN L KDA ++MPT S ++ SV++S
Sbjct: 668 HPWSKDVKHALLHRFQLNGFRPNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPSVIQSG 727
Query: 63 FN---------LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS----L 109
L +Q+A ++ L A ++ KK+I ++ +
Sbjct: 728 TTKGVTVVISPLLSLMEDQVA--HLKRLHIQAFLLNGDVSREGKKEIYGALRNARVEHLI 785
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169
+LLYV+PE + K+ + + L ++ LARI IDE HC S WGHDFRPDY+ L +T
Sbjct: 786 QLLYVTPEMVNKNGALLDILSHLHSRHKLARIVIDEAHCVSQWGHDFRPDYKELGNTRTR 845
Query: 170 FPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDEL 229
FP +P++ LTATAT V +DV L + D V FNRPNL YEVR KP + +D +
Sbjct: 846 FPGIPLMALTATATENVKVDVIHNLGMRDAEVFVQSFNRPNLIYEVRQKPKG-TNVVDGI 904
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRN-RGLRVSAYHAKLESN------------ 276
A+ + + Q+GIIY S + CE + E+LR + + YHA L +
Sbjct: 905 AETIKTSYNGQAGIIYCLSRQSCERVAEQLRETHKINAAHYHAGLPAEDRISIQTDWQSG 964
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G GK S
Sbjct: 965 KCSVIVATIAFGMGIDKPDVRFVIHHSMPKSLEGYYQETGRAGRDGKRS 1013
>gi|240275770|gb|EER39283.1| RecQ family helicase MusN [Ajellomyces capsulatus H143]
Length = 1559
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 133/349 (38%), Positives = 187/349 (53%), Gaps = 38/349 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
+PWS V+ L +F L FRPNQL AIN L KDA ++MPT S ++ SV++S
Sbjct: 668 HPWSKDVKHALLHRFQLNGFRPNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPSVIQSG 727
Query: 63 FN---------LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS----L 109
L +Q+A ++ L A ++ KK+I ++ +
Sbjct: 728 TTKGVTVVISPLLSLMEDQVA--HLKRLHIQAFLLNGDVSREGKKEIYGALRNARVEHLI 785
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169
+LLYV+PE + K+ + + L ++ LARI IDE HC S WGHDFRPDY+ L +T
Sbjct: 786 QLLYVTPEMVNKNGALLDILSHLHSRHKLARIVIDEAHCVSQWGHDFRPDYKELGNTRTR 845
Query: 170 FPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDEL 229
FP +P++ LTATAT V +DV L + D V FNRPNL YEVR KP + +D +
Sbjct: 846 FPGIPLMALTATATENVKVDVIHNLGMRDAEVFVQSFNRPNLIYEVRQKPKG-TNVVDGI 904
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRN-RGLRVSAYHAKLESN------------ 276
A+ + + Q+GIIY S + CE + E+LR + + YHA L +
Sbjct: 905 AETIKTSYNGQAGIIYCLSRQSCERVAEQLRETHKINAAHYHAGLPAEDRISIQTDWQSG 964
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G GK S
Sbjct: 965 KCSVIVATIAFGMGIDKPDVRFVIHHSMPKSLEGYYQETGRAGRDGKRS 1013
>gi|225563190|gb|EEH11469.1| RecQ family helicase MusN [Ajellomyces capsulatus G186AR]
Length = 1559
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 133/349 (38%), Positives = 187/349 (53%), Gaps = 38/349 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
+PWS V+ L +F L FRPNQL AIN L KDA ++MPT S ++ SV++S
Sbjct: 668 HPWSKDVKHALLHRFQLNGFRPNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPSVIQSG 727
Query: 63 FN---------LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS----L 109
L +Q+A ++ L A ++ KK+I ++ +
Sbjct: 728 TTKGVTVVISPLLSLMEDQVA--HLKRLHIQAFLLNGDVSREGKKEIYGALRNARVEHLI 785
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169
+LLYV+PE + K+ + + L ++ LARI IDE HC S WGHDFRPDY+ L +T
Sbjct: 786 QLLYVTPEMVNKNGALLDILSHLHSRRKLARIVIDEAHCVSQWGHDFRPDYKELGNTRTR 845
Query: 170 FPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDEL 229
FP +P++ LTATAT V +DV L + D V FNRPNL YEVR KP + +D +
Sbjct: 846 FPGIPLMALTATATENVKVDVIHNLGMRDAEVFVQSFNRPNLIYEVRQKPKG-TNVVDGI 904
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRN-RGLRVSAYHAKLESN------------ 276
A+ + + Q+GIIY S + CE + E+LR + + YHA L +
Sbjct: 905 AETIKTSYNGQAGIIYCLSRQSCERVAEQLRETHKINAAHYHAGLPAEDRISIQTDWQSG 964
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G GK S
Sbjct: 965 KCSVIVATIAFGMGIDKPDVRFVIHHSMPKSLEGYYQETGRAGRDGKRS 1013
>gi|213408509|ref|XP_002175025.1| ATP-dependent DNA helicase hus2/rqh1 [Schizosaccharomyces japonicus
yFS275]
gi|212003072|gb|EEB08732.1| ATP-dependent DNA helicase hus2/rqh1 [Schizosaccharomyces japonicus
yFS275]
Length = 1283
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 131/344 (38%), Positives = 183/344 (53%), Gaps = 42/344 (12%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--------------DY 49
+YPWS + L++KF L FR NQ+ AIN L KD ++MPT +
Sbjct: 460 SYPWSRELMHTLRTKFQLKGFRKNQIEAINGTLAGKDVFVLMPTGGGKSLCYQLPAVMET 519
Query: 50 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC-LMTESSS 108
S V V+ +L + L +NI L P+ + +K+ I LM +
Sbjct: 520 GNSRGVTLVISPLLSLMQDQLEHLRKLNIPALPLSG--EQPSDE--RKQVISFLMAKKVQ 575
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KLLYV+PE LA + + L+ +Y LARI IDE HC S WGHDFRPDY+ L IL+
Sbjct: 576 VKLLYVTPEGLASNGAISRVLESLYTRKLLARIVIDEAHCVSHWGHDFRPDYKQLGILRD 635
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
+ VP++ LTATA V DV L++E+C+ +K+ FNRPNL+YE++ K KD E
Sbjct: 636 KYRGVPVMALTATANEIVKKDVITTLRMENCIEMKSSFNRPNLYYEIKPK----KDVFAE 691
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN----------- 276
+ +S +QSGIIY S CE + +LRN GL+ YHA L+
Sbjct: 692 MHRFISNGRLDQSGIIYCLSRTSCEQVAAKLRNEYGLKAWHYHAGLDKAERQRIQSSWQA 751
Query: 277 -------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+G+DK +VR+VIHH KS+E +YQ + G
Sbjct: 752 GIYKVIVATIAFGMGVDKGDVRYVIHHSFPKSLEGYYQETGRAG 795
>gi|328725542|ref|XP_001947924.2| PREDICTED: Bloom syndrome protein homolog [Acyrthosiphon pisum]
Length = 1185
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 125/338 (36%), Positives = 170/338 (50%), Gaps = 75/338 (22%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIM----------------- 89
T+YP S + +V +S F L +FRPNQL IN ALL D ++M
Sbjct: 434 TNYPHSRELFTVFRSTFGLHNFRPNQLETINAALLGHDCFVLMPTGGGKSLCYQLPAVIS 493
Query: 90 --------------------------PTGKLLKK----------KKICLMTESSSLKLLY 113
PT LL K+C+ LK+LY
Sbjct: 494 KGVTLVISPLKSLVIDQTEKLKSLDIPTAHLLGNMKPEEENIIFTKLCM--SEPGLKMLY 551
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
V+PEK+A S L ++ G LAR+ IDE HC S WGHDFRPDY+ L + +PDV
Sbjct: 552 VTPEKIAASMKLGQILNNLHCRGKLARLVIDEAHCVSHWGHDFRPDYKRLGEFRKKYPDV 611
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
PI+ LTATATT+V DV LQI + + FNRPNL Y ++ P K + E+A+L+
Sbjct: 612 PIMALTATATTRVREDVLHQLQISGTKLFLSSFNRPNLLY--KVVPKKGKSAMAEIANLI 669
Query: 234 SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------- 276
+++NQSGI+Y S KEC++ + N G++ +YHA L
Sbjct: 670 KEKYKNQSGIVYCLSRKECDNTATYMCNEGIKAISYHAGLSDPKRNDVQMKWITNKVNLV 729
Query: 277 -VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VR+V H+ L KS+E +YQ S G
Sbjct: 730 CATIAFGMGIDKPDVRYVFHYSLPKSIEGYYQESGRAG 767
>gi|189200787|ref|XP_001936730.1| ATP-dependent DNA helicase hus2/rqh1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187983829|gb|EDU49317.1| ATP-dependent DNA helicase hus2/rqh1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 1420
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 180/351 (51%), Gaps = 42/351 (11%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP-----------WS 52
N+PWS +R+ L +F L FRP QL AIN L ++MPT S
Sbjct: 500 NFPWSQDLRTALLHRFGLRGFRPGQLEAINTTLSGDHCFVLMPTGGGKSLCYQLPSVIAS 559
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE------S 106
+ R V L +Q+ A + +I G+ +K +M
Sbjct: 560 GKTRGVTIVVSPLLSLMEDQVDACRNRFGMQAFLI---NGESTAAQKNMIMDALRQRDPQ 616
Query: 107 SSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
+++LYV+PE L+K++ ++ Q+++ G LARI IDE HC S WGHDFRPDY+ L +
Sbjct: 617 QFIQILYVTPEMLSKNQRMISAFQQLHSGGNLARIVIDEAHCVSQWGHDFRPDYKALGDV 676
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
FP VP++ LTATAT V DV L I+ C FNRPNL YEV K + +
Sbjct: 677 VRQFPGVPVIALTATATQLVRTDVVANLGIQGCRQYSQSFNRPNLSYEVLPK---GRGVI 733
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------- 276
D +ADL+ ++ +SGIIY S K CE + ++L G+R YHA ++S
Sbjct: 734 DSIADLIKEKYTGKSGIIYCLSRKTCEQVAQKLSETGIRAYHYHAGMDSADRSDVQRKWQ 793
Query: 277 --------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDK +VR+VIHH L KS+E +YQ + G GK S
Sbjct: 794 KNEYHVIVATIAFGMGIDKADVRYVIHHSLPKSLEGYYQETGRAGRDGKRS 844
>gi|328697674|ref|XP_001952385.2| PREDICTED: Bloom syndrome protein homolog [Acyrthosiphon pisum]
Length = 1185
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 125/338 (36%), Positives = 170/338 (50%), Gaps = 75/338 (22%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIM----------------- 89
T+YP S + +V +S F L +FRPNQL IN ALL D ++M
Sbjct: 434 TNYPHSRELFTVFRSTFGLHNFRPNQLETINAALLGHDCFVLMPTGGGKSLCYQLPAVIS 493
Query: 90 --------------------------PTGKLLKK----------KKICLMTESSSLKLLY 113
PT LL K+C+ LK+LY
Sbjct: 494 KGVTLVISPLKSLVIDQTEKLKSLDIPTAHLLGNMKPEEENIIFTKLCM--SEPGLKMLY 551
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
V+PEK+A S L ++ G LAR+ IDE HC S WGHDFRPDY+ L + +PDV
Sbjct: 552 VTPEKIAASMKLGQILNNLHCRGKLARLVIDEAHCVSHWGHDFRPDYKRLGEFRKKYPDV 611
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
PI+ LTATATT+V DV LQI + + FNRPNL Y ++ P K + E+A+L+
Sbjct: 612 PIMALTATATTRVREDVLHQLQISGTKLFLSSFNRPNLLY--KVVPKKGKSAMAEIANLI 669
Query: 234 SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------- 276
+++NQSGI+Y S KEC++ + N G++ +YHA L
Sbjct: 670 KEKYKNQSGIVYCLSRKECDNTATYMCNEGIKAISYHAGLSDPKRNDVQMKWITNKVNLV 729
Query: 277 -VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VR+V H+ L KS+E +YQ S G
Sbjct: 730 CATIAFGMGIDKPDVRYVFHYSLPKSIEGYYQESGRAG 767
>gi|326431575|gb|EGD77145.1| RecQ5 [Salpingoeca sp. ATCC 50818]
Length = 1451
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 121/319 (37%), Positives = 163/319 (51%), Gaps = 70/319 (21%)
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----------LLKK---------- 97
K + L FRPNQL A N AL +D I+MPTG L KK
Sbjct: 711 AFKRQLGLRKFRPNQLEACNAALTGRDCFILMPTGGGKSLCYQLPALTKKGVTFVISPLI 770
Query: 98 ---------------KKICLMTESSS----------------LKLLYVSPEKLAKSKSFM 126
+ +CL++ KL+YV+PE++A S
Sbjct: 771 SLIQDQVSALRQNNIRALCLLSTQDQKTQSQIHRTLCMKDVLCKLIYVTPERIAASHRLK 830
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186
+Q +Y G L+R IDE HC S WGHDFRPDY+ LS L+ FP VP++ LTATAT +V
Sbjct: 831 QTMQNLYTRGLLSRFVIDEAHCVSQWGHDFRPDYKRLSCLREWFPTVPMMALTATATKRV 890
Query: 187 MLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYT 246
D+ L++ + +V + FNRPNLFYEVR K ++ K C++E+ + RFRN+ GI+Y
Sbjct: 891 KRDILMNLKMTNALVFEQSFNRPNLFYEVR-KKSSYKKCVEEIGKEIRTRFRNKCGIVYC 949
Query: 247 TSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDKP 288
S KECE + + L G + YHA ++ +IAFG+GIDKP
Sbjct: 950 LSRKECETVSQALNQSGHKSLFYHAGMDPADREAYQDQWQSGKVNIMCATIAFGMGIDKP 1009
Query: 289 NVRFVIHHCLSKSMENFYQ 307
+VRFV H L KSME +YQ
Sbjct: 1010 DVRFVFHFSLPKSMEGYYQ 1028
>gi|320593232|gb|EFX05641.1| DNA/RNA helicase [Grosmannia clavigera kw1407]
Length = 1854
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 128/360 (35%), Positives = 185/360 (51%), Gaps = 80/360 (22%)
Query: 36 LLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDA---------- 85
L KK AI + + WS VR LK +F ++ FR NQL AIN L KDA
Sbjct: 907 LAKKPAIPLELMCFDWSQEVRKALKDRFRMSGFRHNQLEAINATLSGKDAFVLMPTGGGK 966
Query: 86 -------------------IIIMP-------------------------TGKLLKKKKIC 101
I++ P T +K +
Sbjct: 967 SLCYQLPAVISSGRTNGVSIVVSPLLSLMQDQVDHLKALNIAASAFNSSTPAAARKHILA 1026
Query: 102 LMTESSS---LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRP 158
L ++++ L+LLYV+PE ++KS F L+ +Y+ LAR+ IDE HC S WGHDFRP
Sbjct: 1027 LFSKANPEHFLQLLYVTPEMVSKSSQFCQGLETLYRKKKLARLVIDEAHCVSQWGHDFRP 1086
Query: 159 DYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIK 218
DY+ L ++ FP VP++ LTATAT V++D++ L I+ C V FNRPNL+YE+R K
Sbjct: 1087 DYKALGEVRRRFPSVPVMALTATATPNVIVDIKHNLSIDGCKVFSQSFNRPNLYYEIREK 1146
Query: 219 PAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN- 276
K ++ +A+L+ ++ Q+GI+YT S K + ++LR++ G+ YHA + ++
Sbjct: 1147 ---GKGAVENIAELIQSQYSGQTGIVYTLSQKSTVSIADKLRDKFGISAHHYHAGIPADE 1203
Query: 277 -----------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH L KS+E +YQ + G G HS
Sbjct: 1204 KTRIQRDWQKGRIKIVVATIAFGMGIDKPDVRFVIHHYLPKSLEGYYQETGRAGRDGIHS 1263
>gi|83767361|dbj|BAE57500.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 809
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 131/352 (37%), Positives = 196/352 (55%), Gaps = 42/352 (11%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++PWS V+SVLK +F+L FR NQL AI+ L KD ++MPT S ++ S++KS
Sbjct: 237 HHPWSKDVKSVLKDRFHLRGFRLNQLEAIDATLSGKDTFVLMPTGGGKSLCYQLPSIVKS 296
Query: 62 KFN---------LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS---- 108
L +Q+ ++ L+ A ++ G+ K ++ +M+ SS
Sbjct: 297 GTTRGVTIVISPLLSLMQDQV--YHLRQLEIKAYLL--NGETQKTERQWIMSTLSSSDAE 352
Query: 109 --LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
++LLY++PE + K+++ + L+++ LARI IDE HC S WGHDFRPDY+ L L
Sbjct: 353 GHIELLYITPEMVNKNQTLIRNLERLNNRHRLARIVIDEAHCVSQWGHDFRPDYKELGGL 412
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
+ P VP++ LTATAT V +DV L++E C + FNRPNL YEVR K + L
Sbjct: 413 RAQLPGVPMMALTATATENVKVDVIHNLKMEGCDIFTQSFNRPNLTYEVRQKKKG-NELL 471
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN--------- 276
+AD + + N+SGI+Y S C+ + + LR+ ++ YHA ++ +
Sbjct: 472 ASIADTIKSSYHNKSGIVYCLSRDTCQKVAKSLRDDYRIKAEHYHAGMKPDERAEVQQRW 531
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH L KS+E +YQ + G GK S
Sbjct: 532 QAGRSHVIVATIAFGMGIDKPDVRFVIHHSLPKSLEGYYQETGRAGRDGKRS 583
>gi|154281633|ref|XP_001541629.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411808|gb|EDN07196.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1557
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 134/350 (38%), Positives = 184/350 (52%), Gaps = 40/350 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
+PWS V+ L +F L FRPNQL AIN L KDA ++MPT S ++ SV++S
Sbjct: 668 HPWSKDVKHALLHRFQLNGFRPNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPSVIQSG 727
Query: 63 FN---------LTDFRPNQLAA-----INIALLKKDAIIIMPTGKLLKKKKICLMTESSS 108
L +Q+A I LL D + GK + +
Sbjct: 728 TTKGVTVVISPLLSLMEDQVAHLKRLHIQAFLLNGD---VSREGKKVIYGALRNARVEHL 784
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
++LLYV+PE + K+ + + L ++ LARI IDE HC S WGHDFRPDY+ L +T
Sbjct: 785 IQLLYVTPEMVNKNGALLDILSHLHSRHKLARIVIDEAHCVSQWGHDFRPDYKELGNTRT 844
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
FP +P++ LTATAT V +DV L + D V FNRPNL YEVR KP + +D
Sbjct: 845 RFPGIPLMALTATATENVKVDVIHNLGMRDAEVFVQSFNRPNLIYEVRQKPKG-TNVVDG 903
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRN-RGLRVSAYHAKLESN----------- 276
+A+ + + Q+GIIY S + CE + E+LR + + YHA L +
Sbjct: 904 IAETIKTSYNGQAGIIYCLSRQSCERVAEQLRETHKINAAHYHAGLPAEDRISIQTDWQS 963
Query: 277 -------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G GK S
Sbjct: 964 GKCSVIVATIAFGMGIDKPDVRFVIHHSMPKSLEGYYQETGRAGRDGKRS 1013
>gi|119480183|ref|XP_001260120.1| RecQ family helicase MusN [Neosartorya fischeri NRRL 181]
gi|119408274|gb|EAW18223.1| RecQ family helicase MusN [Neosartorya fischeri NRRL 181]
Length = 1564
Score = 216 bits (551), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 178/346 (51%), Gaps = 78/346 (22%)
Query: 50 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG----------------- 92
PW+ V++VL+ +F+L FR NQL AI+ L KD ++MPTG
Sbjct: 717 PWTKDVKNVLRDRFHLRGFRMNQLEAIDATLSGKDTFVLMPTGGGKSLCYQLPSIVTSGS 776
Query: 93 ----------------------KLLKKKKICLMTES------------------SSLKLL 112
K LK K L E+ ++LL
Sbjct: 777 TRGVTIVVSPLLSLMQDQVSHLKRLKIKAFLLNGETKQEERQWIMQTLSGPAAEEQIELL 836
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
Y++PE + KS++ + L+K+ + LARI IDE HC S WGHDFRPDY+ L ++ P
Sbjct: 837 YITPEMVNKSQALIRSLEKLNRRRRLARIVIDEAHCVSQWGHDFRPDYKALGEVRDQLPG 896
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
VP++ LTATAT V +DV L++E C + FNRPNL YEVR K + L+ +AD+
Sbjct: 897 VPMMALTATATENVKVDVIHNLKMEGCEIFTQSFNRPNLTYEVRQK-TKSAEVLENIADI 955
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN--------------- 276
+ + N+SGIIY S K CE + E L ++ +R YHA ++S+
Sbjct: 956 IKTSYPNKSGIIYCLSRKTCETVAEALTSQHNIRAEYYHAGMDSSKRAEVQEWWQSGRVH 1015
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G GK S
Sbjct: 1016 VIVATIAFGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAGRDGKRS 1061
>gi|350417151|ref|XP_003491281.1| PREDICTED: Bloom syndrome protein homolog [Bombus impatiens]
Length = 1344
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 129/340 (37%), Positives = 181/340 (53%), Gaps = 39/340 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YPW 51
YP S + V + KF L FRPNQL AIN A+L D ++MPT P
Sbjct: 622 YPHSREMLKVFRQKFGLYSFRPNQLQAINAAILGFDCFVLMPTGGGKSLCYQLPALLLPG 681
Query: 52 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
V S LKS L + +L +++I I + ++ L + SLKL
Sbjct: 682 VTIVISPLKS---LILDQVQKLTSLDIPAAHMSGGITDSQASGIYRE---LSKKEPSLKL 735
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEK++ S+ F L +Y+ G LAR IDE HC S WGHDFRPDY+ L+ L+ +P
Sbjct: 736 LYVTPEKISASQKFCNLLTTLYERGLLARFVIDEAHCVSQWGHDFRPDYKKLNRLRENYP 795
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP++ LTATAT +V D+ L + + FNRPNL Y + K K+C DE+
Sbjct: 796 KVPVIALTATATPRVRTDILHQLGLSVPKWFMSSFNRPNLRYSIIAKKG--KNCSDEVIA 853
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--------------- 276
++ +++N+ GI+Y S K+C+D ++R G++ +YHA +
Sbjct: 854 MLKMKYKNECGIVYCLSRKDCDDYAMQMRKNGIKALSYHAGHTDSSRTDIQGRWISEEIK 913
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKPNVRFVIH L KS+E +YQ S G
Sbjct: 914 VVCATIAFGMGIDKPNVRFVIHAALPKSIEGYYQESGRAG 953
>gi|403216335|emb|CCK70832.1| hypothetical protein KNAG_0F01640 [Kazachstania naganishii CBS
8797]
Length = 1373
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 120/347 (34%), Positives = 178/347 (51%), Gaps = 75/347 (21%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--------------- 93
YPWS + + L F L FR NQ AIN L KD ++MPTG
Sbjct: 603 YPWSGELSNKLHEVFKLPGFRSNQEEAINATLEGKDVFVLMPTGGGKSLCYQLPAVVRSG 662
Query: 94 -----------------------LLKKKKICLMTESSS---------------LKLLYVS 115
L + K C+ + + L L+Y+S
Sbjct: 663 KTRGTTIVISPLISLMQDQVEHLLARNIKACMFSSRGTAEERRQTFNLFIHGLLDLIYIS 722
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE ++ S+ ++K+++ G LAR+ IDE HC S+WGHDFRPDY+ L I K FPD+P+
Sbjct: 723 PEMISASEQCKKAIRKLHEDGNLARVVIDEAHCVSNWGHDFRPDYKELKIFKREFPDIPM 782
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATA+ +V +D+ L++++ V +K FNR NLFYEV+ K K+ + E+ D + R
Sbjct: 783 MALTATASEQVRMDIIHNLELKNPVFLKQSFNRTNLFYEVKKK---SKNTIYEICDEIKR 839
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
+FRNQ+GIIY S CE +L+ ++ + YHA LE
Sbjct: 840 KFRNQTGIIYCHSKNSCEQTATQLQRNRIKCAYYHAGLEPEERFKIQKSWQTDEIQVICA 899
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSFRSRY 323
++AFG+GIDKP+VRFV H + +++E +YQ + G GK+S+ + Y
Sbjct: 900 TVAFGMGIDKPDVRFVYHFTIPRTLEGYYQETGRAGRDGKYSYCTTY 946
>gi|159129033|gb|EDP54147.1| RecQ family helicase MusN [Aspergillus fumigatus A1163]
Length = 1563
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 178/346 (51%), Gaps = 78/346 (22%)
Query: 50 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG----------------- 92
PW+ V++VL+ +F+L FR NQL AI+ L KD ++MPTG
Sbjct: 715 PWTKDVKNVLRDRFHLRGFRMNQLEAIDATLSGKDTFVLMPTGGGKSLCYQLPSIVTSGS 774
Query: 93 ----------------------KLLKKKKICLMTES------------------SSLKLL 112
K LK K L E+ ++LL
Sbjct: 775 TRGVTIVVSPLLSLMQDQVSHLKRLKIKAFLLNGETKQEERQWIMQTLSGPAAEEQIELL 834
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
Y++PE + KS++ + L+K+ + LARI IDE HC S WGHDFRPDY+ L ++ P
Sbjct: 835 YITPEMVNKSQALIRSLEKLNRRRRLARIVIDEAHCVSQWGHDFRPDYKALGEVRDQLPG 894
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
VP++ LTATAT V +DV L++E C + FNRPNL YEVR K + L+ +AD+
Sbjct: 895 VPMMALTATATENVKVDVIHNLKMEGCEIFTQSFNRPNLTYEVRQK-TKSAEVLENIADI 953
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN--------------- 276
+ + N+SGIIY S K CE + E L ++ +R YHA ++S+
Sbjct: 954 IKTSYPNKSGIIYCLSRKTCETVAEALTSQHNIRAEYYHAGMDSSKRAEVQEWWQSGRVH 1013
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G GK S
Sbjct: 1014 VIVATIAFGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAGRDGKRS 1059
>gi|350631262|gb|EHA19633.1| RecQ family helicase MusN [Aspergillus niger ATCC 1015]
Length = 1452
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 178/347 (51%), Gaps = 78/347 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL----------- 95
+PWS VR+ LK +F+L FR NQL AI+ L KD ++MPT GK L
Sbjct: 614 HPWSKDVRNALKDRFHLRGFRLNQLEAIDATLSGKDTFVLMPTGGGKSLCYQLPSVVTSG 673
Query: 96 ---------------------------------------KKKKICLMTESSSL-----KL 111
++++ L T S SL +L
Sbjct: 674 STRGVTIVISPLLSLMQDQVSHLNRLNIKAYLLNGETPKEQRQWILSTLSGSLAEEDIEL 733
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LY++PE + KS++ L+K+ ++ LARI IDE HC S WGHDFRPDY+ L L+ P
Sbjct: 734 LYITPEMINKSQAITRSLEKLNRSRKLARIVIDEAHCVSQWGHDFRPDYKELGELRNQLP 793
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP++ LTATAT V +DV L++E C V FNRPNL YEVRIK + L +AD
Sbjct: 794 GVPMMALTATATENVKVDVIHNLKMEGCEVFSQSFNRPNLTYEVRIKKKG-TELLASIAD 852
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN-------------- 276
+ + N+SGI+Y S K CE + LR+ ++ YHA ++S
Sbjct: 853 TIKTSYANKSGIVYCLSRKTCEKVASGLRDDYRIKAEHYHAGMDSAERAKIQQDWQAGRT 912
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G GK S
Sbjct: 913 HVIVATIAFGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAGRDGKRS 959
>gi|146322807|ref|XP_749627.2| RecQ family helicase MusN [Aspergillus fumigatus Af293]
gi|129556812|gb|EAL87589.2| RecQ family helicase MusN [Aspergillus fumigatus Af293]
Length = 1563
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 178/346 (51%), Gaps = 78/346 (22%)
Query: 50 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG----------------- 92
PW+ V++VL+ +F+L FR NQL AI+ L KD ++MPTG
Sbjct: 715 PWTKDVKNVLRDRFHLRGFRMNQLEAIDATLSGKDTFVLMPTGGGKSLCYQLPSIVTSGS 774
Query: 93 ----------------------KLLKKKKICLMTES------------------SSLKLL 112
K LK K L E+ ++LL
Sbjct: 775 TRGVTIVVSPLLSLMQDQVSHLKRLKIKAFLLNGETKQEERQWIMQTLSGPAAEEQIELL 834
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
Y++PE + KS++ + L+K+ + LARI IDE HC S WGHDFRPDY+ L ++ P
Sbjct: 835 YITPEMVNKSQALIRSLEKLNRRRRLARIVIDEAHCVSQWGHDFRPDYKALGEVRDQLPG 894
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
VP++ LTATAT V +DV L++E C + FNRPNL YEVR K + L+ +AD+
Sbjct: 895 VPMMALTATATENVKVDVIHNLKMEGCEIFTQSFNRPNLTYEVRQK-TKSAEVLENIADI 953
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN--------------- 276
+ + N+SGIIY S K CE + E L ++ +R YHA ++S+
Sbjct: 954 IKTSYPNKSGIIYCLSRKTCETVAEALTSQHNIRAEYYHAGMDSSKRAEVQEWWQSGRVH 1013
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G GK S
Sbjct: 1014 VIVATIAFGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAGRDGKRS 1059
>gi|330932861|ref|XP_003303943.1| hypothetical protein PTT_16345 [Pyrenophora teres f. teres 0-1]
gi|311319743|gb|EFQ87962.1| hypothetical protein PTT_16345 [Pyrenophora teres f. teres 0-1]
Length = 1750
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 180/351 (51%), Gaps = 42/351 (11%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP-----------WS 52
N+PWS +R+ L +F L FRP QL AIN L ++MPT S
Sbjct: 829 NHPWSQDLRTALLHRFGLRGFRPGQLEAINTTLSGDHCFVLMPTGGGKSLCYQLPSVIAS 888
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE------S 106
+ R V L +Q+ A + +I G+ +K +M
Sbjct: 889 GKTRGVTIVVSPLLSLMEDQVDACRNRFAMQAFLI---NGESTAAQKNMIMDALRQRDPQ 945
Query: 107 SSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
+++LYV+PE L+K++ ++ Q+++ G LARI IDE HC S WGHDFRPDY+ L +
Sbjct: 946 QFIQILYVTPEMLSKNQRMISAFQQLHSGGNLARIVIDEAHCVSQWGHDFRPDYKALGDV 1005
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
FP VP++ LTATAT V DV L I+ C FNRPNL YEV K K +
Sbjct: 1006 VRQFPGVPVIALTATATQLVRTDVVANLGIQGCRQYSQSFNRPNLSYEVLPK---GKGVI 1062
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------- 276
+ +ADL+ ++ +SGIIY S K CE + ++L G+R YHA ++S
Sbjct: 1063 NSIADLIKEKYTGKSGIIYCLSRKTCEQVAQKLSETGIRAYHYHAGMDSADRSEVQRKWQ 1122
Query: 277 --------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDK +VR+VIHH L KS+E +YQ + G GK S
Sbjct: 1123 KNEYHVIVATIAFGMGIDKADVRYVIHHSLPKSLEGYYQETGRAGRDGKRS 1173
>gi|452005005|gb|EMD97461.1| hypothetical protein COCHEDRAFT_1220872 [Cochliobolus heterostrophus
C5]
Length = 1794
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 131/348 (37%), Positives = 183/348 (52%), Gaps = 36/348 (10%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
NYPWS +R+ L +F L FRP QL IN L ++MPT S ++ SV+ S
Sbjct: 845 NYPWSQDLRTALIRRFGLRGFRPGQLETINTTLAGNHCFVLMPTGGGKSLCYQLPSVIAS 904
Query: 62 KFN---------LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS---L 109
L +Q+ A + +I + KK + + E +
Sbjct: 905 GKTHGVTLVVSPLLSLMEDQVEACRQRFGMQAFLINGESTAAQKKMIMDGLRERDPQQFI 964
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169
++LYV+PE L+K++ ++ Q+++ G LARI IDE HC S WGHDFRPDY+ L +
Sbjct: 965 QILYVTPEMLSKNQRMISAFQQLHSGGNLARIVIDEAHCVSQWGHDFRPDYKALGDVVRQ 1024
Query: 170 FPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDEL 229
FP VP+L LTATAT V DV L I+ C FNRPNL YEV K K ++ +
Sbjct: 1025 FPGVPVLALTATATKLVRSDVVSNLGIQGCQEFSQSFNRPNLSYEVLPK---GKGIINSI 1081
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------- 276
A+L+ R+ +SGIIY S K CE + ++L + G+R YHA ++S
Sbjct: 1082 AELIKERYVGKSGIIYCLSRKSCEQVAQKLSDMGIRAYHYHAGMDSADRSEVQRKWQKNE 1141
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDK +VR+VIHH L KS+E +YQ + G GK S
Sbjct: 1142 YHVIVATIAFGMGIDKADVRYVIHHSLPKSLEGYYQETGRAGRDGKRS 1189
>gi|327303226|ref|XP_003236305.1| ATP-dependent DNA helicase [Trichophyton rubrum CBS 118892]
gi|326461647|gb|EGD87100.1| ATP-dependent DNA helicase [Trichophyton rubrum CBS 118892]
Length = 1556
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 128/347 (36%), Positives = 176/347 (50%), Gaps = 78/347 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT----------------- 91
+PWS V+S ++ F L FRPNQL AIN L KD ++MPT
Sbjct: 687 HPWSKDVKSAMRETFKLRGFRPNQLEAINSTLSGKDTFVLMPTGGGKSLCYQLPSIIRTG 746
Query: 92 ----------------------------------GKLLKKKKICLMTESSSLK------L 111
G + K ++ +M SL+ L
Sbjct: 747 KTKGVTIVISPLLSLMQDQVAHLQKLNVKAFLINGDVSKDERATIMNNLRSLRADSLIQL 806
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PE LAKS++ + L +++ LARI IDE HC S WGHDFRPDY L ++ +
Sbjct: 807 LYVTPEMLAKSRAMESVLLQLHSNDKLARIVIDEAHCVSQWGHDFRPDYTALGTMREKYS 866
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP++ LTATAT V +DV L+++ C V FNRPNL YEVR K AQ D L ++AD
Sbjct: 867 GVPVMALTATATPNVQVDVIHNLRMKGCEVFTQSFNRPNLTYEVRKKGRAQ-DALKDIAD 925
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN-------------- 276
L++ + + GIIY S K CE + +L ++ G++ + YHA L S
Sbjct: 926 LITNDYPEKCGIIYCLSRKTCERVAMQLSSKFGVKAAHYHAGLSSKDRFTVQRDWQSGKH 985
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDK +VRFVIHH + +S+E +YQ + G GK S
Sbjct: 986 NVIVATIAFGMGIDKADVRFVIHHSIPQSLEGYYQETGRAGRDGKRS 1032
>gi|302509478|ref|XP_003016699.1| RecQ family helicase MusN [Arthroderma benhamiae CBS 112371]
gi|291180269|gb|EFE36054.1| RecQ family helicase MusN [Arthroderma benhamiae CBS 112371]
Length = 1441
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 128/347 (36%), Positives = 177/347 (51%), Gaps = 78/347 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT----------------- 91
+PWS V+S ++ F L FRPNQL AIN L KD ++MPT
Sbjct: 658 HPWSKDVKSAMRETFKLRGFRPNQLEAINSTLSGKDTFVLMPTGGGKSLCYQLPSIIRTG 717
Query: 92 ----------------------------------GKLLKKKKICLMTESSSLK------L 111
G + K ++ +M SL+ L
Sbjct: 718 KTKGVTIVISPLLSLMQDQVAHLQKLNVKAFLINGDVSKDERATIMNNLRSLRADSLIQL 777
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PE LAKS++ + L +++ LARI IDE HC S WGHDFRPDY L ++ +
Sbjct: 778 LYVTPEMLAKSRAMESVLLQLHSNDKLARIVIDEAHCVSQWGHDFRPDYTALGTMREKYS 837
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP++ LTATAT V +DV L+++ C V FNRPNL YEVR K AQ D L ++AD
Sbjct: 838 GVPVMALTATATPNVQVDVIHNLRMKGCEVFTQSFNRPNLTYEVRKKGRAQ-DALKDIAD 896
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN-------------- 276
L++ + ++ GIIY S K CE + +L ++ G++ + YHA L S
Sbjct: 897 LITNDYPDKCGIIYCLSRKTCERVAMQLSSKFGVKAAHYHAGLSSKDRFTVQRDWQSGKH 956
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDK +VRFVIHH + +S+E +YQ + G GK S
Sbjct: 957 NVIVATIAFGMGIDKADVRFVIHHSIPQSLEGYYQETGRAGRDGKRS 1003
>gi|19114004|ref|NP_593092.1| RecQ type DNA helicase Rqh1 [Schizosaccharomyces pombe 972h-]
gi|1175484|sp|Q09811.1|HUS2_SCHPO RecName: Full=ATP-dependent DNA helicase hus2/rqh1
gi|1019410|emb|CAA91177.1| RecQ type DNA helicase Rqh1 [Schizosaccharomyces pombe]
gi|1684754|emb|CAA70577.1| DNA-helicase [Schizosaccharomyces pombe]
Length = 1328
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 134/344 (38%), Positives = 184/344 (53%), Gaps = 42/344 (12%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--------------DY 49
+YPWS V LK KF+L FR NQL AIN L KD I+MPT +
Sbjct: 500 SYPWSKEVLGCLKHKFHLKGFRKNQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEG 559
Query: 50 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC-LMTESSS 108
S V V+ +L + + L +NI L P + +++ I LM ++
Sbjct: 560 GASRGVTLVISPLLSLMQDQLDHLRKLNIPSLPLSG--EQPADE--RRQVISFLMAKNVL 615
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KLLYV+PE LA + + L+ +Y+ LARI IDE HC S WGHDFRPDY+ L +L+
Sbjct: 616 VKLLYVTPEGLASNGAITRVLKSLYERKLLARIVIDEAHCVSHWGHDFRPDYKQLGLLRD 675
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
+ +P + LTATA V D+ L++E+C+ +K+ FNRPNLFYE++ K KD E
Sbjct: 676 RYQGIPFMALTATANEIVKKDIINTLRMENCLELKSSFNRPNLFYEIKPK----KDLYTE 731
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLES------------ 275
L +S ++SGIIY S CE + +LRN GL+ YHA LE
Sbjct: 732 LYRFISNGHLHESGIIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQS 791
Query: 276 ------NVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+G+DK +VRFVIHH KS+E +YQ + G
Sbjct: 792 GSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAG 835
>gi|212529002|ref|XP_002144658.1| RecQ family helicase MusN [Talaromyces marneffei ATCC 18224]
gi|210074056|gb|EEA28143.1| RecQ family helicase MusN [Talaromyces marneffei ATCC 18224]
Length = 1573
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 126/352 (35%), Positives = 193/352 (54%), Gaps = 41/352 (11%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP-----------WS 52
++ WS V++VL+ +F+L FRP+QL AIN L KDA ++MPT S
Sbjct: 686 SFAWSKDVKTVLRDRFHLKGFRPHQLEAINATLGGKDAFVLMPTGGGKSLCYQLPSVIHS 745
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS---- 108
R + V L +Q+ + +K A I G + + K +M+ +S
Sbjct: 746 GRTKGVTIVVSPLLSLMEDQVDHLQKLGIK--AYFI--NGDVSSEHKRWVMSALASPYAD 801
Query: 109 --LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
++LLYV+PE + K+ + L+ ++ AR+ IDE HC S WGHDFRPDY+ L
Sbjct: 802 REIELLYVTPEMINKNVTLCDILKTLHDNRKFARLVIDEAHCVSQWGHDFRPDYKELGAF 861
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
++ F +P++ LTATAT V +DV L+++DC V+ FNRPNL Y+V K + D +
Sbjct: 862 RSKFSGLPVMALTATATENVKIDVINNLRMKDCEVLSQSFNRPNLTYDVLPKKGSAPDII 921
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREEL-RNRGLRVSAYHAKLESN--------- 276
++AD++ +R ++GI+Y S K+CE + +EL + ++ + YHA + S
Sbjct: 922 SQIADIIETSYRRKAGIVYCLSRKDCEKVAQELSQGYNIKATHYHAGMPSEERTSVQRDW 981
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G GK S
Sbjct: 982 QAGRYDVIVATIAFGMGIDKPDVRFVIHHTIPKSLEGYYQETGRAGRDGKRS 1033
>gi|302653064|ref|XP_003018365.1| RecQ family helicase MusN [Trichophyton verrucosum HKI 0517]
gi|291182004|gb|EFE37720.1| RecQ family helicase MusN [Trichophyton verrucosum HKI 0517]
Length = 1341
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 128/347 (36%), Positives = 177/347 (51%), Gaps = 78/347 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT----------------- 91
+PWS V+S ++ F L FRPNQL AIN L KD ++MPT
Sbjct: 687 HPWSRDVKSAMRETFKLRGFRPNQLEAINSTLSGKDTFVLMPTGGGKSLCYQLPSIIRTG 746
Query: 92 ----------------------------------GKLLKKKKICLMTESSSLK------L 111
G + K ++ +M SL+ L
Sbjct: 747 KTKGVTIVISPLLSLMQDQVAHLQKLNVKAFLINGDVSKDERATIMNNLRSLRADSLIQL 806
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PE LAKS++ + L +++ LARI IDE HC S WGHDFRPDY L ++ +
Sbjct: 807 LYVTPEMLAKSRAMESVLLQLHSNDKLARIVIDEAHCVSQWGHDFRPDYTALGTMREKYS 866
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP++ LTATAT V +DV L+++ C V FNRPNL YEVR K AQ D L ++AD
Sbjct: 867 GVPVMALTATATPNVQVDVIHNLRMKGCEVFTQSFNRPNLTYEVRKKGRAQ-DALKDIAD 925
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN-------------- 276
L++ + ++ GIIY S K CE + +L ++ G++ + YHA L S
Sbjct: 926 LITNDYPDKCGIIYCLSRKTCERVAMQLSSKFGVKAAHYHAGLSSKDRFTVQRDWQSGKH 985
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDK +VRFVIHH + +S+E +YQ + G GK S
Sbjct: 986 NVIVATIAFGMGIDKADVRFVIHHSIPQSLEGYYQETGRAGRDGKRS 1032
>gi|238487580|ref|XP_002375028.1| RecQ family helicase MusN [Aspergillus flavus NRRL3357]
gi|317143477|ref|XP_001819502.2| recQ family helicase MusN [Aspergillus oryzae RIB40]
gi|220699907|gb|EED56246.1| RecQ family helicase MusN [Aspergillus flavus NRRL3357]
Length = 1524
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 131/352 (37%), Positives = 196/352 (55%), Gaps = 42/352 (11%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++PWS V+SVLK +F+L FR NQL AI+ L KD ++MPT S ++ S++KS
Sbjct: 684 HHPWSKDVKSVLKDRFHLRGFRLNQLEAIDATLSGKDTFVLMPTGGGKSLCYQLPSIVKS 743
Query: 62 KFN---------LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS---- 108
L +Q+ ++ L+ A ++ G+ K ++ +M+ SS
Sbjct: 744 GTTRGVTIVISPLLSLMQDQV--YHLRQLEIKAYLL--NGETQKTERQWIMSTLSSSDAE 799
Query: 109 --LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
++LLY++PE + K+++ + L+++ LARI IDE HC S WGHDFRPDY+ L L
Sbjct: 800 GHIELLYITPEMVNKNQTLIRNLERLNNRHRLARIVIDEAHCVSQWGHDFRPDYKELGGL 859
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
+ P VP++ LTATAT V +DV L++E C + FNRPNL YEVR K + L
Sbjct: 860 RAQLPGVPMMALTATATENVKVDVIHNLKMEGCDIFTQSFNRPNLTYEVRQKKKGN-ELL 918
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN--------- 276
+AD + + N+SGI+Y S C+ + + LR+ ++ YHA ++ +
Sbjct: 919 ASIADTIKSSYHNKSGIVYCLSRDTCQKVAKSLRDDYRIKAEHYHAGMKPDERAEVQQRW 978
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH L KS+E +YQ + G GK S
Sbjct: 979 QAGRSHVIVATIAFGMGIDKPDVRFVIHHSLPKSLEGYYQETGRAGRDGKRS 1030
>gi|401626200|gb|EJS44156.1| sgs1p [Saccharomyces arboricola H-6]
Length = 1463
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 119/343 (34%), Positives = 177/343 (51%), Gaps = 75/343 (21%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----------LLKKK 98
YPWSD V L F L FRPNQ+ A+N L KD ++MPTG L+K
Sbjct: 673 YPWSDEVLYRLHETFKLPGFRPNQIEAVNATLNGKDVFVLMPTGGGKSLCYQLPALVKSG 732
Query: 99 K-----------ICLMTESSS--------------------------------LKLLYVS 115
K I LM + L L+Y+S
Sbjct: 733 KTHGTTIVVSPLISLMQDQVEHLLNKNIKASMFSSKGTAEQRRQTFNLFINGLLDLVYIS 792
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE ++ S+ + ++Y G LARI +DE HC S+WGHDFRPDY+ L K +PD+P+
Sbjct: 793 PEMISASEQCKRAISRLYTDGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPM 852
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATA+ +V +D+ L++++ V +K FNR NL+YEV+ K K+ + E+ D +
Sbjct: 853 IALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVKKK---TKNTIFEICDAVKS 909
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
F+NQ+GIIY S K CE +++ G++ + YHA +E +
Sbjct: 910 NFKNQTGIIYCHSKKSCEQTSAQMQKNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICA 969
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GIDKP+VRFV H + +++E +YQ + G GK+S+
Sbjct: 970 TVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGKYSY 1012
>gi|444313787|ref|XP_004177551.1| hypothetical protein TBLA_0A02320 [Tetrapisispora blattae CBS 6284]
gi|387510590|emb|CCH58032.1| hypothetical protein TBLA_0A02320 [Tetrapisispora blattae CBS 6284]
Length = 1416
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 120/355 (33%), Positives = 184/355 (51%), Gaps = 64/355 (18%)
Query: 3 PNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLK 60
P YPW+ + LK F L+ FRP+QL AIN L +D ++MPT S ++ +V+K
Sbjct: 713 PRYPWTSELEHRLKETFKLSGFRPHQLEAINATLSGRDVFVLMPTGGGKSLCYQLPAVIK 772
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKK---------KICLMTESSS--- 108
S + ++I P L++ + K C+ + +
Sbjct: 773 S-----------------GKTRGTTVVISPLISLMQDQVEHLLDNNIKACMFSSKGTADQ 815
Query: 109 ------------LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDF 156
L L+Y+SPE ++ S+ L+K+Y G LAR+ IDE HC S+WGHDF
Sbjct: 816 RRQHFNLFIHGFLDLIYMSPEMISASEQCKRALKKLYDDGKLARVVIDEAHCVSNWGHDF 875
Query: 157 RPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVR 216
RPDY+ L K FPD+P++ LTATA +V +D+ L++ D V +K FNR NL+YEV
Sbjct: 876 RPDYKELKYFKREFPDIPMIALTATANEQVRMDIIHNLELNDPVFLKQSFNRNNLYYEVT 935
Query: 217 IKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN 276
K K+ + +++D + RF+NQ+GI+Y S CE L G++ + YHA +E +
Sbjct: 936 KK---TKNSIFQMSDEIKSRFKNQTGIVYCHSKNSCEQTSALLEKSGIKAAFYHAGMEPD 992
Query: 277 ------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFV H + +++E +YQ + G
Sbjct: 993 DRLRVQKAWQADEIQVICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAG 1047
>gi|62733310|gb|AAX95427.1| DNA Helicase-related [Oryza sativa Japonica Group]
Length = 759
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 140/386 (36%), Positives = 190/386 (49%), Gaps = 79/386 (20%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQ----------------LAAINIALLKKDAIIIMPT 47
++ W R V + F ++ +R NQ IN + +D ++IM
Sbjct: 70 SFLWDSRADDVRFNVFGISSYRQNQREVSFFILHPFKHIATFQIINAIMSGRDVLVIMAA 129
Query: 48 DYPWS----------DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKK 97
S D + V+ +L + LAA+ I + K + K
Sbjct: 130 GGGKSLCYQLPAVLHDGITLVVSPLLSLIQDQVMGLAALGIQAYMLASTTNKEVEKFVYK 189
Query: 98 KKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFR 157
L LK+LYV+PEK++KSK FM+KL+K + AG L+ IAIDE HCCS WGHDFR
Sbjct: 190 ---ALDKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLIAIDEAHCCSQWGHDFR 246
Query: 158 PDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRI 217
PDY+ L ILK FP VP++ LTATAT KV +D+ +ML I CV + NRPNLFY+V
Sbjct: 247 PDYKNLGILKVQFPSVPMIALTATATNKVQIDLIEMLHIPRCVKFVSTINRPNLFYKVFE 306
Query: 218 KPAAQKDCLDELADLMSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA----- 271
K K +DE+A+ +S + N+SGI+Y S KECE + +EL RG+ YHA
Sbjct: 307 KSPVGKVVIDEIANFISESYPNNESGIVYCFSRKECEQVAKELSERGILADYYHADMDVI 366
Query: 272 ------------KLESNV-SIAFGLGIDKPN----------------------------- 289
KL+ V ++AFG+GI+KP+
Sbjct: 367 SREKVHMRWSKSKLQVIVGTVAFGMGINKPDDSELVLNQRQEDNLACQLLEKGCRFRLGE 426
Query: 290 --VRFVIHHCLSKSMENFYQVSIAFG 313
VRFVIHH LSKSME +YQ S G
Sbjct: 427 NIVRFVIHHSLSKSMETYYQESGRAG 452
>gi|317032832|ref|XP_001394458.2| recQ family helicase MusN [Aspergillus niger CBS 513.88]
Length = 1460
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 178/347 (51%), Gaps = 78/347 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL----------- 95
+PWS VR+ LK +F+L FR NQL AI+ L KD ++MPT GK L
Sbjct: 608 HPWSKDVRNALKDRFHLRGFRLNQLEAIDATLSGKDTFVLMPTGGGKSLCYQLPSVVTSG 667
Query: 96 ---------------------------------------KKKKICLMTESSSL-----KL 111
++++ L T S S+ +L
Sbjct: 668 STRGVTIVISPLLSLMQDQVSHLNRLNIKAYLLNGETPKEQRQWILSTLSGSMAEEDIEL 727
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LY++PE + KS++ L+K+ ++ LARI IDE HC S WGHDFRPDY+ L L+ P
Sbjct: 728 LYITPEMVNKSQAITKSLEKLNRSRKLARIVIDEAHCVSQWGHDFRPDYKELGELRNQLP 787
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP++ LTATAT V +DV L++E C V FNRPNL YEVRIK + L +AD
Sbjct: 788 GVPMMALTATATENVKVDVIHNLRMEGCEVFSQSFNRPNLTYEVRIKKKG-TELLASIAD 846
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN-------------- 276
+ + N+SGI+Y S K CE + LR+ ++ YHA ++S
Sbjct: 847 TIKTSYANKSGIVYCLSRKTCEKVASGLRDDYRIKAEHYHAGMDSAERAKIQQDWQAGRT 906
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G GK S
Sbjct: 907 HVIVATIAFGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAGRDGKRS 953
>gi|50557416|ref|XP_506116.1| YALI0F31977p [Yarrowia lipolytica]
gi|49651986|emb|CAG78930.1| YALI0F31977p [Yarrowia lipolytica CLIB122]
Length = 1300
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 126/346 (36%), Positives = 172/346 (49%), Gaps = 75/346 (21%)
Query: 39 KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----- 93
++ + I +YPW+ V VL+ +F L +FR NQL AIN L D +++MPTG
Sbjct: 478 EECVAIEEDEYPWTQEVYKVLRERFMLNEFRANQLHAINATLNGDDVLVLMPTGGGKSLC 537
Query: 94 --------------------------------LLKKKKICLMTESSS------------- 108
L K C M SS
Sbjct: 538 YQLPALVNGGKTRGLSVVISPLISLMKDQTEALTAKNISCAMFNSSQSVQERKQSLAALS 597
Query: 109 ---LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSI 165
+ LLYVSPE +S L K+++ LARI IDE HC SSWGHDFRPDY+ L
Sbjct: 598 SGDIALLYVSPEMFQQSNIMQNTLHKLHEQNRLARIVIDEAHCVSSWGHDFRPDYKALVN 657
Query: 166 LKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDC 225
+K+ P VPI+ LTATA KV +D+Q L+ + K FNRPNL+YEVR+K K+
Sbjct: 658 VKSRLPGVPIMALTATANEKVRMDIQGCLR-PNRRFFKQSFNRPNLYYEVRLK---TKNF 713
Query: 226 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--------- 276
E+ D++ R+R Q+GIIY S K CE E L+ G++ YHA +E+
Sbjct: 714 QQEITDMLRGRYRGQTGIIYCHSKKLCETTSEFLKEAGIKADFYHAGMETEQRTYVQGNW 773
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDK +VR+VIH + ++ME +YQ + G
Sbjct: 774 QSGKIQVVCATIAFGMGIDKADVRYVIHCTVPRNMEGYYQETGRAG 819
>gi|296813367|ref|XP_002847021.1| RecQ family helicase MusN [Arthroderma otae CBS 113480]
gi|238842277|gb|EEQ31939.1| RecQ family helicase MusN [Arthroderma otae CBS 113480]
Length = 1550
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 129/359 (35%), Positives = 183/359 (50%), Gaps = 79/359 (22%)
Query: 38 KKDAIIIMPTD-YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT----- 91
+KD ++ D +PWS V+S ++ F+L FRPNQL +IN L +D ++MPT
Sbjct: 671 QKDLGMMHSVDGHPWSKDVKSAMREIFHLRGFRPNQLESINSTLSGRDTFVLMPTGGGKS 730
Query: 92 ----------------------------------------------GKLLKKKKICLMTE 105
G + K ++ +M+
Sbjct: 731 LCYQLPSIIKTGQTKGVTIVISPLLSLMQDQVAHLQKLHVKAFLINGDVSKDERTSIMSN 790
Query: 106 ------SSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPD 159
S ++LLYV+PE LAKS++ + L +++ LARI IDE HC S WGHDFRPD
Sbjct: 791 LRSLRADSHIQLLYVTPEMLAKSRAMESALLQLHSNKKLARIVIDEAHCVSQWGHDFRPD 850
Query: 160 YQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKP 219
Y L ++ + VP++ LTATAT V +DV L ++ C V FNRPNL YEVR K
Sbjct: 851 YTALGKMRERYTGVPVMALTATATPNVQVDVIHNLHMKGCDVFTQSFNRPNLTYEVRKKG 910
Query: 220 AAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN-- 276
AQ D L ++ADL++ + + GIIY S K CE + +L ++ G++ + YHA L S
Sbjct: 911 RAQ-DALKDIADLITTDYSGKCGIIYCLSRKTCERVAMQLSSKFGVKTAHYHAGLSSKER 969
Query: 277 ----------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDK NVRFVIHH + +S+E +YQ + G GK S
Sbjct: 970 FAVQRDWQSGRHTVIVATIAFGMGIDKANVRFVIHHSIPQSLEGYYQETGRAGRDGKRS 1028
>gi|358054510|dbj|GAA99436.1| hypothetical protein E5Q_06135 [Mixia osmundae IAM 14324]
Length = 1229
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 134/346 (38%), Positives = 180/346 (52%), Gaps = 43/346 (12%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP-----------WS 52
++PWS V VL F L+ FRPNQL AIN L D I+MPT S
Sbjct: 476 SFPWSRDVLKVLNKHFRLSSFRPNQLKAINATLAADDVFILMPTGGGKSLCYQLPAVVQS 535
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLK-- 110
+ R V L +Q AL+ KD I + L K + ++ E +
Sbjct: 536 GKTRGVSIVISPLLSLIHDQCQ----ALMDKDVIALAFNSDLKKSDRDFVINELRTADDD 591
Query: 111 ----LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
L+YV+PE +AKS F L+ +++ LAR IDE HC SSWG DFRPDY+ L +
Sbjct: 592 TRPCLIYVTPEMIAKSTLFKDVLRNLHRRQRLARFVIDEAHCISSWGFDFRPDYKELGSI 651
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
K +P VPI+ LTATA +V DV L I DC+V+ FNRPNL YEVR K K +
Sbjct: 652 KREYPGVPIMALTATANERVKQDVITSLGINDCLVLSQSFNRPNLRYEVRPK---GKLII 708
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN--------- 276
+++DL+ R F GIIY S K+CED+ E L+ + G++ YHA + +
Sbjct: 709 KDISDLIKRDFAGLCGIIYCLSKKQCEDIAEALKTQHGVKAHHYHAGMAKDDRIRIQADW 768
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDK NVRFV+H +S S+E +YQ + G
Sbjct: 769 QRGKIHVVCATIAFGMGIDKANVRFVLHFTISGSLEAYYQETGRAG 814
>gi|134079141|emb|CAK45953.1| unnamed protein product [Aspergillus niger]
Length = 1548
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 178/347 (51%), Gaps = 78/347 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL----------- 95
+PWS VR+ LK +F+L FR NQL AI+ L KD ++MPT GK L
Sbjct: 696 HPWSKDVRNALKDRFHLRGFRLNQLEAIDATLSGKDTFVLMPTGGGKSLCYQLPSVVTSG 755
Query: 96 ---------------------------------------KKKKICLMTESSSL-----KL 111
++++ L T S S+ +L
Sbjct: 756 STRGVTIVISPLLSLMQDQVSHLNRLNIKAYLLNGETPKEQRQWILSTLSGSMAEEDIEL 815
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LY++PE + KS++ L+K+ ++ LARI IDE HC S WGHDFRPDY+ L L+ P
Sbjct: 816 LYITPEMVNKSQAITKSLEKLNRSRKLARIVIDEAHCVSQWGHDFRPDYKELGELRNQLP 875
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP++ LTATAT V +DV L++E C V FNRPNL YEVRIK + L +AD
Sbjct: 876 GVPMMALTATATENVKVDVIHNLRMEGCEVFSQSFNRPNLTYEVRIKKKG-TELLASIAD 934
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN-------------- 276
+ + N+SGI+Y S K CE + LR+ ++ YHA ++S
Sbjct: 935 TIKTSYANKSGIVYCLSRKTCEKVASGLRDDYRIKAEHYHAGMDSAERAKIQQDWQAGRT 994
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G GK S
Sbjct: 995 HVIVATIAFGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAGRDGKRS 1041
>gi|365990115|ref|XP_003671887.1| hypothetical protein NDAI_0I00750 [Naumovozyma dairenensis CBS 421]
gi|343770661|emb|CCD26644.1| hypothetical protein NDAI_0I00750 [Naumovozyma dairenensis CBS 421]
Length = 1434
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/345 (34%), Positives = 184/345 (53%), Gaps = 75/345 (21%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK--------LLK 96
T++PWS+ V+ L+ F L FRPNQ A++ L KD I+MPT GK ++K
Sbjct: 648 TNFPWSNEVKLKLRQIFKLPGFRPNQEEAVSATLSGKDVFILMPTGGGKSLCYQLPAVIK 707
Query: 97 KKK-----------ICLMTESSS--------------------------------LKLLY 113
K I LM + L ++Y
Sbjct: 708 SGKTKGTTIVISPLISLMQDQVQHLLDKNIKASMFSSRGTVEEKRQVFNLFICGLLDVVY 767
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
+SPE ++ S+ +++++ G LAR+ +DE HC S+WGHDFRPDY+ L K +PDV
Sbjct: 768 ISPEMISASEQCKRAIKRLHSDGKLARVVVDEAHCVSNWGHDFRPDYKELKYFKREYPDV 827
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
P++ LTATA+ +V +D+ L+++D V +K FNR NL+YEVR K K+ + E+AD++
Sbjct: 828 PMMALTATASEQVRMDIIHNLELKDPVFLKQSFNRTNLYYEVRKK---NKNTIFEIADMI 884
Query: 234 SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------- 276
+FRNQ+GIIY S CE +++ G++ + YHA +E +
Sbjct: 885 KSKFRNQTGIIYCHSKNSCEQTSNQMQRAGIKSAYYHAGMEPDDRLKIQKAWQADEIQVI 944
Query: 277 -VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GIDKP+VRFV H + +++E +YQ + G GK+S+
Sbjct: 945 CATVAFGMGIDKPDVRFVFHFTVPRTLEGYYQETGRAGRDGKYSY 989
>gi|391864070|gb|EIT73368.1| ATP-dependent DNA helicase [Aspergillus oryzae 3.042]
Length = 1174
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 131/352 (37%), Positives = 195/352 (55%), Gaps = 42/352 (11%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++PWS V+SVLK +F+L FR NQL AI+ L KD ++MPT S ++ S++KS
Sbjct: 334 HHPWSKDVKSVLKDRFHLRGFRLNQLEAIDATLSGKDTFVLMPTGGGKSLCYQLPSIVKS 393
Query: 62 KFN---------LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS---- 108
L +Q+ ++ L+ A ++ G+ K ++ +M+ SS
Sbjct: 394 GTTRGVTIVISPLLSLMQDQV--YHLRQLEIKAYLL--NGETQKTERQWIMSTLSSSDAE 449
Query: 109 --LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
++LLY++PE + K+++ L+++ LARI IDE HC S WGHDFRPDY+ L L
Sbjct: 450 GHIELLYITPEMVNKNQTLTRNLERLNNRHRLARIVIDEAHCVSQWGHDFRPDYKELGGL 509
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
+ P VP++ LTATAT V +DV L++E C + FNRPNL YEVR K + L
Sbjct: 510 RAQLPGVPMMALTATATENVKVDVIHNLKMEGCDIFTQSFNRPNLTYEVRQKKKGN-ELL 568
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN--------- 276
+AD + + N+SGI+Y S C+ + + LR+ ++ YHA ++ +
Sbjct: 569 ASIADTIKSSYHNKSGIVYCLSRDTCQKVAKSLRDDYRIKAEHYHAGMKPDERAEVQQRW 628
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH L KS+E +YQ + G GK S
Sbjct: 629 QAGRSHVIVATIAFGMGIDKPDVRFVIHHSLPKSLEGYYQETGRAGRDGKRS 680
>gi|254567515|ref|XP_002490868.1| ATP-dependent helicase [Komagataella pastoris GS115]
gi|238030664|emb|CAY68588.1| ATP-dependent helicase [Komagataella pastoris GS115]
gi|328351249|emb|CCA37649.1| bloom syndrome protein [Komagataella pastoris CBS 7435]
Length = 1302
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/342 (33%), Positives = 174/342 (50%), Gaps = 75/342 (21%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT----------------- 91
YPW+D V +L+ F L FR NQL A+N L +D ++MPT
Sbjct: 525 YPWTDEVFYILRETFKLESFRSNQLEAVNATLSGEDVFVLMPTGGGKSLCYQLPALVQSG 584
Query: 92 ------------------------------------GKLLKKKKICLMTESSSLKLLYVS 115
G + +++++ + S L L+Y+S
Sbjct: 585 STRGTTVVVSPLISLMQDQVEHLIANKIKAGMINSKGTVQERRQMFDLLNSGDLDLIYLS 644
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE ++ S + L+++++ G LARI +DE HC SSWGHDFRPDY+ L+ K +PD+P+
Sbjct: 645 PEMISASNQARSSLKRLHRIGKLARIVVDEAHCVSSWGHDFRPDYKTLNYFKKEYPDIPV 704
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATA V++D+ L + K FNR NLFY+V++K K LDE+ ++++
Sbjct: 705 MALTATANEHVVMDIVHNLGLNKPQCFKQSFNRTNLFYKVQVKT---KTHLDEITNMING 761
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
++RNQ+GIIY S CE L G++ S YHA + +
Sbjct: 762 QYRNQTGIIYCHSKNSCEQTSARLIQNGIKCSFYHAGMTTEDRFAVQSAWQSDKIRVICA 821
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIH + +++E +YQ + G G HS
Sbjct: 822 TIAFGMGIDKPDVRFVIHLTVPRTLEGYYQETGRAGRDGNHS 863
>gi|451855559|gb|EMD68851.1| hypothetical protein COCSADRAFT_178603 [Cochliobolus sativus ND90Pr]
Length = 1787
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 131/348 (37%), Positives = 181/348 (52%), Gaps = 36/348 (10%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
N+PWS +R+ L +F L FRP QL IN L ++MPT S ++ SV+ S
Sbjct: 845 NFPWSQDLRTALIRRFGLRGFRPGQLETINTTLAGDHCFVLMPTGGGKSLCYQLPSVIAS 904
Query: 62 KFN---------LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS---L 109
L +Q+ A + +I + KK + + E +
Sbjct: 905 GKTHGVTLVVSPLLSLMEDQVEACRQRFGMQAFLINGESTAAQKKMIMDGLRERDPQQFI 964
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169
++LYV+PE L+K++ + Q+++ G LARI IDE HC S WGHDFRPDY+ L +
Sbjct: 965 QILYVTPEMLSKNQRMINAFQQLHSGGNLARIVIDEAHCVSQWGHDFRPDYKALGDVVRQ 1024
Query: 170 FPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDEL 229
FP VP+L LTATAT V DV L I+ C FNRPNL YEV K K ++ +
Sbjct: 1025 FPGVPVLALTATATKLVRSDVVSNLGIQGCREFSQSFNRPNLSYEVLPK---AKGIINNI 1081
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------- 276
ADL+ R+ +SGIIY S K CE + ++L G+R YHA ++S
Sbjct: 1082 ADLIKERYVGKSGIIYCLSRKSCEQVAQKLSEMGIRAYHYHAGMDSADRSDVQRKWQKNE 1141
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDK +VR+VIHH L KS+E +YQ + G GK S
Sbjct: 1142 YHVIVATIAFGMGIDKADVRYVIHHSLPKSLEGYYQETGRAGRDGKRS 1189
>gi|258574619|ref|XP_002541491.1| hypothetical protein UREG_01007 [Uncinocarpus reesii 1704]
gi|237901757|gb|EEP76158.1| hypothetical protein UREG_01007 [Uncinocarpus reesii 1704]
Length = 1432
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 133/356 (37%), Positives = 189/356 (53%), Gaps = 51/356 (14%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP-----------WS 52
N+PWS V++ L+ F L FRPNQL AIN L KDA ++MPT S
Sbjct: 604 NHPWSADVKAALRDVFKLRGFRPNQLEAINATLNGKDAFVLMPTGGGKSLCYQLPSVVQS 663
Query: 53 DRVRSV---LKSKFNLTDFRPNQLAA-------INIALLKKDAIIIMPTGKLLKKKKICL 102
R R V + +L D + QL + IN +L D I+ L K ++
Sbjct: 664 GRTRGVTVVISPLLSLMDDQVEQLRSLSIKAHFINGSLSAADRCEIL---AYLHKPRV-- 718
Query: 103 MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQY 162
L++LYV+PE + KS+ + L+++++A AR+ IDE HC S WGHDFRPDY+
Sbjct: 719 ---EDYLQILYVTPEMVNKSRVMLGALRQLHRAKKFARLVIDEAHCVSQWGHDFRPDYKE 775
Query: 163 LSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQ 222
L + F VP++ LTATAT V +DV L ++ C FNRPNL YEVR K
Sbjct: 776 LGEFRREFRGVPLMALTATATKNVEVDVIHNLGMQGCETFTQSFNRPNLTYEVRTK-VNY 834
Query: 223 KDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELR-NRGLRVSAYHAKLESN----- 276
+ L+ ++ ++ + ++GIIY S K CE L +LR +R + YHA ++++
Sbjct: 835 DETLESISRIIDFHY-GKTGIIYCLSRKNCERLATDLRVKHQIRATHYHAGMDADQRIDV 893
Query: 277 -------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G GK S
Sbjct: 894 QRKWQSGEHQVIVATIAFGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAGRDGKRS 949
>gi|366993190|ref|XP_003676360.1| hypothetical protein NCAS_0D04180 [Naumovozyma castellii CBS 4309]
gi|342302226|emb|CCC69999.1| hypothetical protein NCAS_0D04180 [Naumovozyma castellii CBS 4309]
Length = 1344
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 118/343 (34%), Positives = 176/343 (51%), Gaps = 75/343 (21%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--------------- 93
+PWSD V L F L FR NQL A++ L KD ++MPTG
Sbjct: 568 HPWSDEVDFKLHEVFKLPGFRSNQLEAVDATLSGKDVFVLMPTGGGKSLCYQLPAVVKSG 627
Query: 94 -----------------------LLKKKKICLMTESSS---------------LKLLYVS 115
L K K C+ + + L L+Y+S
Sbjct: 628 KTKGTTIVISPLISLMQDQVEHLLAKDIKACMFSSKGTAEQRKQTFNLFIHGLLDLIYIS 687
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE ++ S+ + K++ G LARI +DE HC S+WGHDFRPDY+ L K +PDVP+
Sbjct: 688 PEMISASEQCKRAISKLHSDGKLARIVVDEAHCVSNWGHDFRPDYKELKYFKREYPDVPM 747
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATA+ +V +D+ L+++D V +K FNR NL+YEV+ K K+ + E+ D +
Sbjct: 748 IALTATASEQVRMDIIHNLELKDPVFLKQSFNRTNLYYEVKKK---TKNAIFEIIDSIKT 804
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
+FRNQ+GIIY S CE ++L+ +G++ + YHA +E +
Sbjct: 805 KFRNQTGIIYCHSKNSCEQTSDKLQRQGIKCAFYHAGMEPDDRLKVQKAWQADEIQVICA 864
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GIDKP+VRFV H + +++E +YQ + G GK S+
Sbjct: 865 TVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGKFSY 907
>gi|261289349|ref|XP_002603118.1| hypothetical protein BRAFLDRAFT_198907 [Branchiostoma floridae]
gi|229288434|gb|EEN59129.1| hypothetical protein BRAFLDRAFT_198907 [Branchiostoma floridae]
Length = 666
Score = 213 bits (542), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 128/339 (37%), Positives = 179/339 (52%), Gaps = 36/339 (10%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSD 53
++P S R+ S+ F L FR NQL A N ALL KD I+MPT S
Sbjct: 5 HFPHSSRMTSLFNKVFGLHRFRTNQLEACNAALLGKDCFILMPTGGGKSLCYQLPAIVSG 64
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINI--ALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
V V+ +L + ++L + + A L + + +G + L + KL
Sbjct: 65 GVTIVISPLKSLIQDQVSKLNGLEVPAAHLSGELSQQVASGVYMD-----LARRTPQTKL 119
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEK++ S+ ++ L+ +Y+ G L R IDE HC S WGHDFRPDY+ L +L+ FP
Sbjct: 120 LYVTPEKVSSSEKLLSTLKSLYQRGLLDRFVIDEAHCVSQWGHDFRPDYKKLCVLRKSFP 179
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP++ LTATAT +V D+ L + D FNR NL Y V P K E+ +
Sbjct: 180 GVPMMALTATATPRVRRDILHQLGMTDPRWFVQSFNRTNLHYSV--MPKKVKSATKEVLE 237
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--------------- 276
L++ RFR+++GI+Y S KECE + +EL G AYHA +
Sbjct: 238 LINSRFRSKTGIVYCLSRKECETVSDELCRNGTSACAYHAGMSDKERARIQDLWPEHYKV 297
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH+ L KS+E +YQ S G
Sbjct: 298 ICATIAFGMGIDKPDVRFVIHYSLPKSVEGYYQESGRAG 336
>gi|392297356|gb|EIW08456.1| Sgs1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1341
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/346 (35%), Positives = 180/346 (52%), Gaps = 76/346 (21%)
Query: 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK--------LL 95
PT YPWSD V L F L FRPNQL A+N L KD ++MPT GK ++
Sbjct: 552 PT-YPWSDEVLYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVV 610
Query: 96 KKKK-----------ICLMTE--------------------------------SSSLKLL 112
K K I LM + + L L+
Sbjct: 611 KSGKTHGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLDLV 670
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
Y+SPE ++ S+ + ++Y G LARI +DE HC S+WGHDFRPDY+ L K +PD
Sbjct: 671 YISPEMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPD 730
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
+P++ LTATA+ +V +D+ L++++ V +K FNR NL+YEV K K+ + E+ D
Sbjct: 731 IPMIALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKKT---KNTIFEICDA 787
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
+ RF+NQ+GIIY S K CE +++ G++ + YHA +E +
Sbjct: 788 VKSRFKNQTGIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQV 847
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GIDKP+VRFV H + +++E +YQ + G G +S+
Sbjct: 848 ICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSY 893
>gi|6323844|ref|NP_013915.1| Sgs1p [Saccharomyces cerevisiae S288c]
gi|464912|sp|P35187.1|SGS1_YEAST RecName: Full=ATP-dependent helicase SGS1; AltName: Full=Helicase
TPS1
gi|349194|gb|AAA35167.1| bps. 390..881 = homology to E.coli recQ; bps. 414..430 = ATP
binding site [Saccharomyces cerevisiae]
gi|642282|emb|CAA87811.1| Tps1p [Saccharomyces cerevisiae]
gi|726279|gb|AAB60289.1| Sgs1p [Saccharomyces cerevisiae]
gi|285814193|tpg|DAA10088.1| TPA: Sgs1p [Saccharomyces cerevisiae S288c]
Length = 1447
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/346 (35%), Positives = 180/346 (52%), Gaps = 76/346 (21%)
Query: 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK--------LL 95
PT YPWSD V L F L FRPNQL A+N L KD ++MPT GK ++
Sbjct: 658 PT-YPWSDEVLYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVV 716
Query: 96 KKKK-----------ICLMTE--------------------------------SSSLKLL 112
K K I LM + + L L+
Sbjct: 717 KSGKTHGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLDLV 776
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
Y+SPE ++ S+ + ++Y G LARI +DE HC S+WGHDFRPDY+ L K +PD
Sbjct: 777 YISPEMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPD 836
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
+P++ LTATA+ +V +D+ L++++ V +K FNR NL+YEV K K+ + E+ D
Sbjct: 837 IPMIALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK---TKNTIFEICDA 893
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
+ RF+NQ+GIIY S K CE +++ G++ + YHA +E +
Sbjct: 894 VKSRFKNQTGIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQV 953
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GIDKP+VRFV H + +++E +YQ + G G +S+
Sbjct: 954 ICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSY 999
>gi|349580478|dbj|GAA25638.1| K7_Sgs1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1447
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/346 (35%), Positives = 179/346 (51%), Gaps = 76/346 (21%)
Query: 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK--------LL 95
PT YPWSD V L F L FRPNQL A+N L KD ++MPT GK ++
Sbjct: 658 PT-YPWSDEVLYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVV 716
Query: 96 KKKK-----------ICLMTESSS--------------------------------LKLL 112
K K I LM + L L+
Sbjct: 717 KSGKTHGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLDLV 776
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
Y+SPE ++ S+ + ++Y G LARI +DE HC S+WGHDFRPDY+ L K +PD
Sbjct: 777 YISPEMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPD 836
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
+P++ LTATA+ +V +D+ L++++ V +K FNR NL+YEV K K+ + E+ D
Sbjct: 837 IPMIALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK---TKNTIFEICDA 893
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
+ RF+NQ+GIIY S K CE +++ G++ + YHA +E +
Sbjct: 894 VKSRFKNQTGIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQV 953
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GIDKP+VRFV H + +++E +YQ + G G +S+
Sbjct: 954 ICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSY 999
>gi|151945893|gb|EDN64125.1| Nucleolar DNA helicase of the RecQ family involved in maintenance
of genome integrity [Saccharomyces cerevisiae YJM789]
Length = 1447
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/346 (35%), Positives = 180/346 (52%), Gaps = 76/346 (21%)
Query: 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK--------LL 95
PT YPWSD V L F L FRPNQL A+N L KD ++MPT GK ++
Sbjct: 658 PT-YPWSDEVLYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVV 716
Query: 96 KKKK-----------ICLMTE--------------------------------SSSLKLL 112
K K I LM + + L L+
Sbjct: 717 KSGKTHGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLDLV 776
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
Y+SPE ++ S+ + ++Y G LARI +DE HC S+WGHDFRPDY+ L K +PD
Sbjct: 777 YISPEMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPD 836
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
+P++ LTATA+ +V +D+ L++++ V +K FNR NL+YEV K K+ + E+ D
Sbjct: 837 IPMIALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK---TKNTIFEICDA 893
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
+ RF+NQ+GIIY S K CE +++ G++ + YHA +E +
Sbjct: 894 VKSRFKNQTGIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQV 953
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GIDKP+VRFV H + +++E +YQ + G G +S+
Sbjct: 954 ICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSY 999
>gi|312373074|gb|EFR20899.1| hypothetical protein AND_18334 [Anopheles darlingi]
Length = 1384
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 124/335 (37%), Positives = 170/335 (50%), Gaps = 72/335 (21%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLLKKKKICLMTES 106
YP S R++ V K F L FRPNQL IN LL +D ++MPT GK L + L+T
Sbjct: 585 YPHSSRLQMVFKETFGLRTFRPNQLQVINATLLGRDCFVLMPTGGGKSLCYQLPALLTTG 644
Query: 107 SS-------------------------------------------------LKLLYVSPE 117
+ LKLLYV+PE
Sbjct: 645 VTIVVSPLKSLILDQVQKLNTLDIPAGSLSGEAQMADVQRIYDDLYSSCPVLKLLYVTPE 704
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
K++ S F L +++ L RI IDE HC S+WGHDFRPDY+ L +L+ FPDVPI+
Sbjct: 705 KISSSAKFQNLLSALHRRRQLGRIVIDEAHCVSAWGHDFRPDYKRLYMLREQFPDVPIIA 764
Query: 178 LTATATTKVMLDVQKMLQIE-DCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATA T+V +DV L+++ D + FNRPNL Y V K A E+ +L+ +
Sbjct: 765 LTATANTRVRMDVITQLKLQPDTRWFLSSFNRPNLKYLVLPKKGASTK--GEMINLIKAK 822
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------S 278
F +GI+Y S KEC+ L + R G++ +YHA L + +
Sbjct: 823 FARDTGIVYCLSKKECDQLATDFRKAGIKAKSYHAGLTDTIREATQKEWIGDRIKVVCAT 882
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
IAFG+GIDKP+VR+V+H+C+ KS+E +YQ S G
Sbjct: 883 IAFGMGIDKPDVRYVLHYCMPKSIEGYYQESGRAG 917
>gi|256271606|gb|EEU06648.1| Sgs1p [Saccharomyces cerevisiae JAY291]
Length = 1447
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/346 (35%), Positives = 180/346 (52%), Gaps = 76/346 (21%)
Query: 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK--------LL 95
PT YPWSD V L F L FRPNQL A+N L KD ++MPT GK ++
Sbjct: 658 PT-YPWSDEVLYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVV 716
Query: 96 KKKK-----------ICLMTE--------------------------------SSSLKLL 112
K K I LM + + L L+
Sbjct: 717 KSGKTHGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLDLV 776
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
Y+SPE ++ S+ + ++Y G LARI +DE HC S+WGHDFRPDY+ L K +PD
Sbjct: 777 YISPEMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPD 836
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
+P++ LTATA+ +V +D+ L++++ V +K FNR NL+YEV K K+ + E+ D
Sbjct: 837 IPMIALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK---TKNTIFEICDA 893
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
+ RF+NQ+GIIY S K CE +++ G++ + YHA +E +
Sbjct: 894 VKSRFKNQTGIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQV 953
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GIDKP+VRFV H + +++E +YQ + G G +S+
Sbjct: 954 ICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSY 999
>gi|225681066|gb|EEH19350.1| ATP-dependent DNA helicase hus2/rqh1 [Paracoccidioides brasiliensis
Pb03]
Length = 1550
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 129/347 (37%), Positives = 186/347 (53%), Gaps = 34/347 (9%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRSV 58
YPWS V+S L +F L+ FR NQL AIN L KDA ++MPT Y V S
Sbjct: 678 YPWSKDVKSALLHRFGLSGFRLNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPAVVNSG 737
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAI-IIMPTGKLLKKKKICLMTESSS------LKL 111
+ L +A LK+ I + G + K+ K + + ++ ++L
Sbjct: 738 TTKGVTVVISPLLSLMEDQVAHLKELHIQAFLLNGDVNKEHKSLIYSALANPNVEKLIQL 797
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PE + K+ + + L +++ LARI IDE HC S WGHDFRPDY+ L + FP
Sbjct: 798 LYVTPEMVNKNGALLGALSRLHSRKKLARIVIDEAHCVSQWGHDFRPDYKELGNTRAKFP 857
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
+P++ LTATAT V +DV L + + V FNRPNL YEVR KP + ++ +A+
Sbjct: 858 GIPLMALTATATENVKIDVIHNLGMRNAEVFVQSFNRPNLTYEVRPKP-KNTNVIESIAE 916
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN-------------- 276
++ + Q+GIIY S + CE + +LR++ ++ + YHA L S
Sbjct: 917 TINESYSGQAGIIYCLSRRSCEKVAAQLRDKYKIKAAHYHAGLPSEERISIQRDWQSGKY 976
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDK +VRFVIHH + KS+E +YQ + G GK S
Sbjct: 977 NVIVATIAFGMGIDKADVRFVIHHTMPKSLEGYYQETGRAGRDGKRS 1023
>gi|259148775|emb|CAY82020.1| Sgs1p [Saccharomyces cerevisiae EC1118]
Length = 1447
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/346 (35%), Positives = 180/346 (52%), Gaps = 76/346 (21%)
Query: 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK--------LL 95
PT YPWSD V L F L FRPNQL A+N L KD ++MPT GK ++
Sbjct: 658 PT-YPWSDEVLYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVV 716
Query: 96 KKKK-----------ICLMTE--------------------------------SSSLKLL 112
K K I LM + + L L+
Sbjct: 717 KSGKTHGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLDLV 776
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
Y+SPE ++ S+ + ++Y G LARI +DE HC S+WGHDFRPDY+ L K +PD
Sbjct: 777 YISPEMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPD 836
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
+P++ LTATA+ +V +D+ L++++ V +K FNR NL+YEV K K+ + E+ D
Sbjct: 837 IPMIALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK---TKNTIFEICDA 893
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
+ RF+NQ+GIIY S K CE +++ G++ + YHA +E +
Sbjct: 894 VKSRFKNQTGIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQV 953
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GIDKP+VRFV H + +++E +YQ + G G +S+
Sbjct: 954 ICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSY 999
>gi|440636643|gb|ELR06562.1| hypothetical protein GMDG_08035 [Geomyces destructans 20631-21]
Length = 1823
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 124/345 (35%), Positives = 183/345 (53%), Gaps = 41/345 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
+ WS V+ L ++F+L FR NQL AIN L KD ++MPT Y +RS
Sbjct: 864 HKWSGEVKQKLTARFHLRGFRQNQLEAINATLGGKDTFVLMPTGGGKSLCYQLPAIIRSG 923
Query: 58 -------VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE---SS 107
V+ +L + + L + I +I + K + + E
Sbjct: 924 TTRGVTIVISPLLSLMQDQVDHLQKLGIQAF----VINSEVTQSYKNMVMSGLEERIPED 979
Query: 108 SLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
++LLYV+PE + KS++ +++ +++ LARI IDE HC S WGHDFRPDY+ L ++
Sbjct: 980 FVELLYVTPEMVTKSEAILSRFASLHRRHKLARIVIDEAHCVSQWGHDFRPDYKELGEVR 1039
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLD 227
FP VPI+ LTATAT V +DV L +E C FNRPNL YEVR KP ++ +
Sbjct: 1040 ARFPGVPIMALTATATENVKVDVIHNLAMEGCQQYTQSFNRPNLTYEVRPKP-KHEELMK 1098
Query: 228 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLES----------- 275
+ ++++++++ Q+GIIY S K CE + +EL R ++ YHA L+
Sbjct: 1099 SIVEIITKKYKGQTGIIYALSRKNCEKVADELSTRYNIKACHYHAALKPIEKKRVQQDWQ 1158
Query: 276 -------NVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDK NVRFVIH + KS+E +YQ + G
Sbjct: 1159 AGKWQVIVATIAFGMGIDKANVRFVIHQTMPKSLEGYYQETGRAG 1203
>gi|323336083|gb|EGA77356.1| Sgs1p [Saccharomyces cerevisiae Vin13]
Length = 1447
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/346 (35%), Positives = 180/346 (52%), Gaps = 76/346 (21%)
Query: 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK--------LL 95
PT YPWSD V L F L FRPNQL A+N L KD ++MPT GK ++
Sbjct: 658 PT-YPWSDEVLYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVV 716
Query: 96 KKKK-----------ICLMTE--------------------------------SSSLKLL 112
K K I LM + + L L+
Sbjct: 717 KSGKTHGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLDLV 776
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
Y+SPE ++ S+ + ++Y G LARI +DE HC S+WGHDFRPDY+ L K +PD
Sbjct: 777 YISPEMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPD 836
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
+P++ LTATA+ +V +D+ L++++ V +K FNR NL+YEV K K+ + E+ D
Sbjct: 837 IPMIALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK---TKNTIFEICDA 893
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
+ RF+NQ+GIIY S K CE +++ G++ + YHA +E +
Sbjct: 894 VKSRFKNQTGIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQV 953
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GIDKP+VRFV H + +++E +YQ + G G +S+
Sbjct: 954 ICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSY 999
>gi|323307639|gb|EGA60904.1| Sgs1p [Saccharomyces cerevisiae FostersO]
Length = 1396
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/346 (35%), Positives = 180/346 (52%), Gaps = 76/346 (21%)
Query: 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK--------LL 95
PT YPWSD V L F L FRPNQL A+N L KD ++MPT GK ++
Sbjct: 658 PT-YPWSDEVLYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVV 716
Query: 96 KKKK-----------ICLMTE--------------------------------SSSLKLL 112
K K I LM + + L L+
Sbjct: 717 KSGKTHGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLDLV 776
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
Y+SPE ++ S+ + ++Y G LARI +DE HC S+WGHDFRPDY+ L K +PD
Sbjct: 777 YISPEMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPD 836
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
+P++ LTATA+ +V +D+ L++++ V +K FNR NL+YEV K K+ + E+ D
Sbjct: 837 IPMIALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK---TKNTIFEICDA 893
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
+ RF+NQ+GIIY S K CE +++ G++ + YHA +E +
Sbjct: 894 VKSRFKNQTGIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQV 953
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GIDKP+VRFV H + +++E +YQ + G G +S+
Sbjct: 954 ICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSY 999
>gi|190408415|gb|EDV11680.1| ATP-dependent helicase SGS1 [Saccharomyces cerevisiae RM11-1a]
Length = 1447
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/346 (35%), Positives = 180/346 (52%), Gaps = 76/346 (21%)
Query: 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK--------LL 95
PT YPWSD V L F L FRPNQL A+N L KD ++MPT GK ++
Sbjct: 658 PT-YPWSDEVLYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVV 716
Query: 96 KKKK-----------ICLMTE--------------------------------SSSLKLL 112
K K I LM + + L L+
Sbjct: 717 KSGKTHGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLDLV 776
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
Y+SPE ++ S+ + ++Y G LARI +DE HC S+WGHDFRPDY+ L K +PD
Sbjct: 777 YISPEMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPD 836
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
+P++ LTATA+ +V +D+ L++++ V +K FNR NL+YEV K K+ + E+ D
Sbjct: 837 IPMIALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK---TKNTIFEICDA 893
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
+ RF+NQ+GIIY S K CE +++ G++ + YHA +E +
Sbjct: 894 VKSRFKNQTGIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQV 953
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GIDKP+VRFV H + +++E +YQ + G G +S+
Sbjct: 954 ICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSY 999
>gi|365763903|gb|EHN05429.1| Sgs1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1314
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/346 (35%), Positives = 179/346 (51%), Gaps = 76/346 (21%)
Query: 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK--------LL 95
PT YPWSD V L F L FRPNQL A+N L KD ++MPT GK ++
Sbjct: 658 PT-YPWSDEVLYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVV 716
Query: 96 KKKK-----------ICLMTESSS--------------------------------LKLL 112
K K I LM + L L+
Sbjct: 717 KSGKTHGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLDLV 776
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
Y+SPE ++ S+ + ++Y G LARI +DE HC S+WGHDFRPDY+ L K +PD
Sbjct: 777 YISPEMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPD 836
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
+P++ LTATA+ +V +D+ L++++ V +K FNR NL+YEV K K+ + E+ D
Sbjct: 837 IPMIALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK---TKNTIFEICDA 893
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
+ RF+NQ+GIIY S K CE +++ G++ + YHA +E +
Sbjct: 894 VKSRFKNQTGIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQV 953
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GIDKP+VRFV H + +++E +YQ + G G +S+
Sbjct: 954 ICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSY 999
>gi|156848959|ref|XP_001647360.1| hypothetical protein Kpol_1018p31 [Vanderwaltozyma polyspora DSM
70294]
gi|156118046|gb|EDO19502.1| hypothetical protein Kpol_1018p31 [Vanderwaltozyma polyspora DSM
70294]
Length = 1332
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/349 (34%), Positives = 183/349 (52%), Gaps = 35/349 (10%)
Query: 1 MLPNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--------DYPW- 51
M Y W++ V LKS F L FRPNQ A+N L KD ++MPT P
Sbjct: 536 MHEKYRWTNEVNHKLKSIFKLPGFRPNQEDAVNATLDGKDVFVLMPTGGGKSLCYQLPAM 595
Query: 52 --SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSL 109
S + R L +Q+ + +K D + G +++ + L
Sbjct: 596 IKSGKTRGTTIVISPLISLMHDQVEHLKSKDIKAD--MFSSKGTTEQRRNTFNLFILGLL 653
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169
++Y+SPE ++ S+ ++K+Y LARI +DE HC S+WGHDFRPDY+ L K
Sbjct: 654 DIIYISPEMVSASEQCKKAIKKLYVDKKLARIVVDEAHCVSNWGHDFRPDYKELKFFKRE 713
Query: 170 FPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDEL 229
+PD+P++ LTATA +V+LD+ L ++D V +K FNR NLFYE+RIK K+ + E+
Sbjct: 714 YPDIPLMALTATANERVILDINHNLSLKDPVFLKQSFNRTNLFYEIRIK---NKNSIFEM 770
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------- 276
+ + RFRNQ+GIIY S CE + G++ + YHA +E
Sbjct: 771 CNDIKTRFRNQTGIIYCHSKNSCEQTASLIERSGVKCTYYHAGMEPEDRMKVQQAWQEDK 830
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GIDKP+VRFV H + +++E +YQ + G G +S+
Sbjct: 831 IQVICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSY 879
>gi|340914758|gb|EGS18099.1| hypothetical protein CTHT_0061140 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 2325
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 133/390 (34%), Positives = 190/390 (48%), Gaps = 81/390 (20%)
Query: 2 LPNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--DYPWSDRVRSVL 59
L P S R RSVL + A N L++ A+ I P YPWS+ VR L
Sbjct: 1300 LATGPGSIRERSVLSESSGNAGIVARRRPAANTVPLQRKALSINPALMVYPWSEDVRRAL 1359
Query: 60 KSKFNLTDFRPNQLAAINIALLKKDA-----------------------------IIIMP 90
K +F ++ FR NQL AIN L KDA I++ P
Sbjct: 1360 KDRFRMSGFRHNQLEAINATLAGKDAFVLMPTGGGKSLCYQLPAMVNSGKTRGMTIVVSP 1419
Query: 91 ----------------------TGKL---LKKKKICLMTESSS---LKLLYVSPEKLAKS 122
G+L L+ + + E + ++LLYV+PE + S
Sbjct: 1420 LISLMHDQVEHLKALNIRANTFNGELRSDLRSHILNVFNEENPEHYIQLLYVTPEMVVNS 1479
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+F L+ +Y+ AR+ IDE HC S WGHDFRPDY+ L L+ FP VP++ LTATA
Sbjct: 1480 VAFRKALESLYRKKKFARLVIDEAHCVSQWGHDFRPDYKQLGELRRKFPGVPVMALTATA 1539
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSG 242
T V+ D++ L +E+C V FNRPNL+YEVR K + ++ +++ ++ QSG
Sbjct: 1540 TRNVIADIKHNLSMENCEVFSQSFNRPNLYYEVRHK---GPHYVRDIGEMIINKYPGQSG 1596
Query: 243 IIYTTSIKECEDLREELRNR-GLRVSAYHAKLESNV------------------SIAFGL 283
IIYT S E L+ + L+V YHA+++ ++ +IAFG+
Sbjct: 1597 IIYTLSRHAAESTAATLKEKFHLKVRHYHAQIDPSLKVEIQNEWQSGEIQVVVATIAFGM 1656
Query: 284 GIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
GIDKP+VRFVIH + KS+E +YQ + G
Sbjct: 1657 GIDKPDVRFVIHQNIPKSLEGYYQETGRAG 1686
>gi|254583105|ref|XP_002499284.1| ZYRO0E08250p [Zygosaccharomyces rouxii]
gi|238942858|emb|CAR31029.1| ZYRO0E08250p [Zygosaccharomyces rouxii]
Length = 1294
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/350 (36%), Positives = 185/350 (52%), Gaps = 41/350 (11%)
Query: 3 PNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVR 56
P Y WSD V L F L FRPNQL A+N L KD ++MPT Y V+
Sbjct: 541 PRYAWSDEVDYRLHQSFGLRSFRPNQLQAVNSTLAGKDVFVLMPTGGGKSLCYQLPAIVK 600
Query: 57 S--------VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS 108
S V+ +L + L NI A + G ++++ +
Sbjct: 601 SGKTRGTTIVISPLISLMQDQVEHLLNNNIK-----ASMFSSRGTADQRRQTFNLFIHGL 655
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
L L+Y+SPE ++ S+ ++K++ G LARI +DE HC S+WGHDFRPDY+ L K
Sbjct: 656 LDLIYISPEMISASEQCKRGIKKLHNDGKLARIVVDEAHCVSNWGHDFRPDYKELKYFKR 715
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
+P VP++ LTATA+ +V LDV L+++D V +K FNR NLFY V K K+ + E
Sbjct: 716 EYPHVPMMALTATASEQVRLDVIHNLELKDPVFLKQSFNRKNLFYGVVRK---TKNTIAE 772
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
+ + ++ RF NQ+GIIY S CE +++ G+R + YHA +E +
Sbjct: 773 ICESINTRFANQTGIIYCHSKNSCEQTAAQIQRNGIRCAFYHAGMEPDERSDVQRAWQND 832
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GIDK +VRFV H+ + +++E +YQ + G GK SF
Sbjct: 833 DLQVICATVAFGMGIDKADVRFVYHYTVPRTLEGYYQETGRAGRDGKPSF 882
>gi|156057539|ref|XP_001594693.1| hypothetical protein SS1G_04501 [Sclerotinia sclerotiorum 1980]
gi|154702286|gb|EDO02025.1| hypothetical protein SS1G_04501 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1200
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 131/346 (37%), Positives = 184/346 (53%), Gaps = 41/346 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
Y WS V+ LK +F LT FR NQL AIN L +DA I+MPT Y V+S
Sbjct: 814 YAWSKDVKKGLKDRFRLTGFRQNQLEAINATLAGRDAFILMPTGGGKSLCYQLPAIVQSG 873
Query: 58 -------VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS-- 108
V+ L + + L + I + + K K++ +++S
Sbjct: 874 ATKGVTIVVSPLLALMHDQVDHLRRLRIQAY----LFNSESTKETKQELFTGLSQSKPEQ 929
Query: 109 -LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
++LLYV+PE + KS +KL +Y LARI IDE HC S WGHDFRPDY+ L L+
Sbjct: 930 FVELLYVTPEMINKSSIIQSKLDDLYAKERLARIVIDEAHCVSQWGHDFRPDYKSLHELR 989
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIK--PAAQKDC 225
+P VP + LTATAT +V DV L + +C +K FNRPN++YEVR K +
Sbjct: 990 ERYPGVPFIALTATATERVKKDVIHNLGMHNCDQLKQSFNRPNIYYEVRRKMGKGSTAAM 1049
Query: 226 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--------- 276
E+ ++S ++NQSGIIY S CED+ + LR +G++ +HA + +
Sbjct: 1050 FSEITTMLSVDYKNQSGIIYCLSRDNCEDVAKRLRGQGIKAHHFHAHMAAEDKKDIQHQW 1109
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDK NVRFVIH+CL K++E +YQ + G
Sbjct: 1110 QVGDIQVVVATIAFGMGIDKQNVRFVIHYCLPKTLEGYYQETGRAG 1155
>gi|226292234|gb|EEH47654.1| ATP-dependent DNA helicase Q1 [Paracoccidioides brasiliensis Pb18]
Length = 1550
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 129/347 (37%), Positives = 186/347 (53%), Gaps = 34/347 (9%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRSV 58
YPWS V+S L +F L+ FR NQL AIN L KDA ++MPT Y V S
Sbjct: 678 YPWSKDVKSALLHRFGLSGFRLNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAVVNSG 737
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAI-IIMPTGKLLKKKKICLMTESSS------LKL 111
+ L +A LK+ I + G + K+ K + + ++ ++L
Sbjct: 738 TTKGVTVVISPLLSLMEDQVAHLKELHIQAFLLNGDVNKEHKSLIYSALANPNVEKLIQL 797
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PE + K+ + + L +++ LARI IDE HC S WGHDFRPDY+ L + FP
Sbjct: 798 LYVTPEMVNKNGALLGALSRLHSRKKLARIVIDEAHCVSQWGHDFRPDYKELGNTRAKFP 857
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
+P++ LTATAT V +DV L + + V FNRPNL YEVR KP + ++ +A+
Sbjct: 858 GIPLMALTATATENVKIDVIHNLGMRNAEVFVQSFNRPNLTYEVRPKP-KNTNVIESIAE 916
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN-------------- 276
++ + Q+GIIY S + CE + +LR++ ++ + YHA L S
Sbjct: 917 TINESYSGQAGIIYCLSRRSCEKVAAQLRDKYKIKAAHYHAGLPSEERISIQRDWQSGKY 976
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDK +VRFVIHH + KS+E +YQ + G GK S
Sbjct: 977 NVIVATIAFGMGIDKADVRFVIHHTMPKSLEGYYQETGRAGRDGKRS 1023
>gi|357167600|ref|XP_003581242.1| PREDICTED: ATP-dependent DNA helicase Q-like 4A-like [Brachypodium
distachyon]
Length = 1126
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 171/331 (51%), Gaps = 74/331 (22%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG--------------- 92
D+PW+ + + K F FRPNQ IN + D ++MPTG
Sbjct: 348 DFPWTKELEAHNKRVFGNHSFRPNQREIINATMYGSDVFVLMPTGGGKSLTYQLPALIDE 407
Query: 93 ----------KLLKKK----------KICL----------------MTESSSL--KLLYV 114
L++ + ICL M+ SS+ KLLYV
Sbjct: 408 GITLVVCPLVSLIQDQIMHLAQANIPAICLSANVEWTEQQRILRDLMSPSSTCTYKLLYV 467
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PEK+AKS + + +L+ +Y G L+RI IDE HC S WGHDFRPDYQ+L +LK FP+ P
Sbjct: 468 TPEKIAKSDALLRQLEILYSRGHLSRIVIDEAHCVSQWGHDFRPDYQHLGLLKQKFPETP 527
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
+L LTATAT V DV + L + +CVV + FNRPNL Y V K K CL+++ + +
Sbjct: 528 VLALTATATASVKEDVVQALGLANCVVFRQSFNRPNLRYIVMPK---TKKCLEDIDNFIR 584
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES---------------NV-- 277
+ GIIY S +CE + +LR G + S YH ++ N+
Sbjct: 585 ASHHKECGIIYCLSRMDCEKVAAKLREYGHKASHYHGSMDPLDRTEIQRQWSRDKINIIC 644
Query: 278 -SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KP+VRFVIHH L KS+E ++Q
Sbjct: 645 ATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 675
>gi|344302418|gb|EGW32692.1| hypothetical protein SPAPADRAFT_49652 [Spathaspora passalidarum
NRRL Y-27907]
Length = 1278
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 124/341 (36%), Positives = 171/341 (50%), Gaps = 74/341 (21%)
Query: 44 IMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT------------ 91
I P P+ D + VL + F L FR NQL A+ +LL+KD ++MPT
Sbjct: 516 IPPEARPFIDEIYHVLNNVFKLNSFRSNQLEAVIASLLRKDVFVLMPTGGGKSLCYQLPA 575
Query: 92 ---GKLLKKKKICL----------------------MTESSS----------------LK 110
G L K + + M S L
Sbjct: 576 LVKGGLTKGTTVVISPLISLMQDQVHHLEKLNVNVRMINSKGTADEKRHTMHLFREGLLD 635
Query: 111 LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170
++Y+SPE + KS F ++K+Y G LAR+ IDE HC SSWGHDFRPDY+ + + KT F
Sbjct: 636 IVYLSPEMVIKSAMFQKVIEKLYNEGQLARVVIDEAHCLSSWGHDFRPDYKGMGLFKTKF 695
Query: 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA 230
P+VP++ LTATA +V DV L + + V K FNR NLFYEV+ K A + LD +
Sbjct: 696 PNVPVMALTATANERVRADVITHLNLNNPVFFKQSFNRTNLFYEVQWKNA---NHLDVIK 752
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN-------------- 276
D + R+F+N++GIIY S + CE + L GL + YHA + S
Sbjct: 753 DYIFRKFKNKTGIIYCHSKQSCEQTSQRLNQLGLHSAYYHAGMSSEDRIEVQTQWQENKV 812
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH + +S+E +YQ + G
Sbjct: 813 YVICATIAFGMGIDKPDVRFVIHLFIPRSLEGYYQETGRAG 853
>gi|241952456|ref|XP_002418950.1| ATP-dependent helicase, putative [Candida dubliniensis CD36]
gi|223642289|emb|CAX44258.1| ATP-dependent helicase, putative [Candida dubliniensis CD36]
Length = 1164
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 130/340 (38%), Positives = 178/340 (52%), Gaps = 40/340 (11%)
Query: 6 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS-- 57
P+ D V S+L F L FRPNQL A+ L KD ++MPT Y V+S
Sbjct: 423 PFIDEVYSILNDVFKLQSFRPNQLEAVVATLSSKDVFVLMPTGGGKSLCYQLPALVKSGA 482
Query: 58 ------VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
V+ +L + L A NI K + G K I L E L +
Sbjct: 483 TKGTTVVISPLISLMQDQVQHLLAKNI----KAGMFSSKGGNDDNKHTIHLFREGF-LDI 537
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
+Y+SPEK KS + ++Y LAR+ IDE HC SSWGHDFRPDYQ L K FP
Sbjct: 538 VYLSPEKANKSSLIQKIMTQLYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKDKFP 597
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VPI+ LTATA KV +D+ L++++ V++K FNR NLFYE++ K + L E+ D
Sbjct: 598 KVPIMALTATANEKVRMDILHNLKMDNPVLLKQSFNRTNLFYEIKWKSG---NYLLEIKD 654
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--------------- 276
+ RF+ ++GIIY S + CE +L GL+ S YHA + ++
Sbjct: 655 YILSRFKGKTGIIYCHSKQSCEQTSMKLNEYGLKTSFYHAGMSADSRFNIQKRWQESKIQ 714
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L +++E +YQ + G
Sbjct: 715 VICATIAFGMGIDKPDVRFVIHLFLPRTLEGYYQETGRAG 754
>gi|407917347|gb|EKG10661.1| Helicase [Macrophomina phaseolina MS6]
Length = 1739
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/347 (35%), Positives = 177/347 (51%), Gaps = 78/347 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD------------------------ 84
+PW+ V+ LK +F+L FRP+QL IN L KD
Sbjct: 848 FPWTGEVKKTLKDQFHLRGFRPHQLETINATLAGKDCFVLMPTGGGKSLCYQLPAVVQSG 907
Query: 85 -----AIIIMP----------------------TGKLLKKKKICLMTE------SSSLKL 111
++I P G+L +++ +M +++
Sbjct: 908 KTRGVTVVISPLLSLMEDQVNHLRALHIQAFYINGELSYEQRRFIMNALREPQVEKFIQV 967
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PE L+K+++ + LQ ++ LARI IDE HC S WGHDFRPDY+ L + F
Sbjct: 968 LYVTPEMLSKNQAMVNLLQDLHHRQRLARIVIDEAHCVSQWGHDFRPDYKALGETRRQFI 1027
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP++ LTATAT V +D L I+ C + FNRPNL+YEVR K ++D L ++AD
Sbjct: 1028 GVPVMALTATATQNVKVDTIHNLGIQGCEIFAQSFNRPNLYYEVRTK-GKREDTLQKIAD 1086
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN-------------- 276
++ ++R QSGI+Y S K+CE + ++LR + + YHA +ES
Sbjct: 1087 IIKTQYRGQSGIVYCLSRKKCEVIAQQLREKHNISAHHYHAGMESAEKSETQKSWQAGGY 1146
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G GK S
Sbjct: 1147 KVIVATIAFGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAGRDGKRS 1193
>gi|38345369|emb|CAE03209.2| OSJNBa0088K19.8 [Oryza sativa Japonica Group]
Length = 1164
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/333 (35%), Positives = 181/333 (54%), Gaps = 37/333 (11%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT----DYPWSDRVRSVL 59
++ W+ + + K F FRPNQ IN + D ++MPT + + S+
Sbjct: 418 HFAWTKELEANNKRVFGNRSFRPNQREIINATMSGNDVFVLMPTGGGKSLTYQSQNVSIF 477
Query: 60 KSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC--LMTESSSLKLLYVSPE 117
+ + N NI+ A + + + ++++I LM+ + + KLLYV+PE
Sbjct: 478 EVGTGIKRVGRNDWRKANIS-----AAYLSASMEWSEQQEILRELMSPTCTYKLLYVTPE 532
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQY-----LSILKTMFPD 172
K+AKS + + +L+ +Y G L+RI IDE HC S WGHDFRPDYQ+ L ILK FP
Sbjct: 533 KIAKSDALLRQLENLYSRGHLSRIVIDEAHCVSQWGHDFRPDYQFFIHQHLGILKQKFPQ 592
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
P+L LTATAT V DV ++L + +C++ + FNRPNL Y V K K CL+++ +
Sbjct: 593 TPVLALTATATASVKEDVVQVLGLANCIIFRQSFNRPNLRYFVWPKT---KKCLEDIHNF 649
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE----SNV----------- 277
+ + GIIY S +CE + +LR G S YH ++ +N+
Sbjct: 650 IHANHNKECGIIYCLSRMDCEKVAAKLREYGHTASHYHGSMDPEDRANIQKQWSKDRINI 709
Query: 278 ---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KP+VRFVIHH L KS+E ++Q
Sbjct: 710 ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 742
>gi|328707887|ref|XP_001947908.2| PREDICTED: Bloom syndrome protein homolog [Acyrthosiphon pisum]
Length = 1128
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 185/338 (54%), Gaps = 33/338 (9%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
+Y +S + +V K F L FRPNQ AIN ALL + I+MPT S ++ +V+
Sbjct: 379 DYSFSWELLAVFKKTFGLRHFRPNQFEAINAALLGHNCFILMPTGGGKSLCYQLPAVILK 438
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKK----KKICLMTE----SSSLKLLY 113
+ P L ++ I +K + +P LL ++ + +E LKLLY
Sbjct: 439 GITVV-ISP--LKSLIIDQTQKLKSLDIPAAHLLSSITPDEENTIYSELWGADPGLKLLY 495
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
V+PEK+A S + L ++ LARI IDE HC S WGHDFRPDY+ L + K + +V
Sbjct: 496 VTPEKVAASNKLIQVLNNLHCRNLLARIVIDEAHCVSQWGHDFRPDYKRLGVFKQNYQNV 555
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
PI+ LTATAT +V DV L IE+ + FNRPNL YEV P K L E+A L+
Sbjct: 556 PIMALTATATQRVRKDVLHQLNIEETKWFVSSFNRPNLVYEVI--PKKGKSSLLEIAKLI 613
Query: 234 SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL---------------ESNV- 277
+F QSGIIY + KEC++ + G++ +YHA L +SNV
Sbjct: 614 KSKFARQSGIIYCMTKKECDNTAIFMSGEGIKAVSYHAGLTDKKRNDVQMQWTSNKSNVV 673
Query: 278 --SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VR+VIH+ L +S+E FYQ S G
Sbjct: 674 CATIAFGMGIDKPDVRYVIHYSLPQSIEGFYQESGRAG 711
>gi|322801995|gb|EFZ22532.1| hypothetical protein SINV_04660 [Solenopsis invicta]
Length = 1148
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 128/340 (37%), Positives = 180/340 (52%), Gaps = 39/340 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS------------ 52
YP S + + + +F L FRPNQL AIN LL D I+MPT S
Sbjct: 502 YPHSREMLQIFRQRFGLYTFRPNQLQAINATLLGFDCFILMPTGGGKSLCYQLPALLSIG 561
Query: 53 -DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
V S LKS L + +L +++I I + + ++ L + +LK+
Sbjct: 562 LTVVVSPLKS---LISDQVQKLISLDIPAAHLSGSITENQAEAIYRE---LSKKEPALKI 615
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEK++ S + L +Y+ LAR IDEVHC S WGHDFRPDY+ L L+ +P
Sbjct: 616 LYVTPEKISASPKLCSTLTNLYERELLARFVIDEVHCVSQWGHDFRPDYKRLRCLRDNYP 675
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP + LTATAT +V D+ L + + + FNRPNL Y + K K+C DE+
Sbjct: 676 KVPTMALTATATPRVRTDILHQLGMTNPKWFMSSFNRPNLRYSIIAKKG--KNCSDEIVA 733
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE----SN----------- 276
++ +F+N GI+Y S K+C+D +++ G++ +YHA L SN
Sbjct: 734 MIMTKFKNACGIVYCLSRKDCDDYAAQMKKNGIKALSYHAGLSDVQRSNCQGKWISDEIR 793
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKPNVRFVIH L KS+E +YQ S G
Sbjct: 794 VICATIAFGMGIDKPNVRFVIHAALPKSIEGYYQESGRAG 833
>gi|345494123|ref|XP_001606008.2| PREDICTED: Bloom syndrome protein homolog [Nasonia vitripennis]
Length = 1223
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 130/344 (37%), Positives = 177/344 (51%), Gaps = 47/344 (13%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YPW 51
YP S ++ S + KF L +FRPNQL AIN ALL D I+MPT P
Sbjct: 466 YPHSRQMMSFFRQKFGLFNFRPNQLQAINAALLGFDCFILMPTGGGKSLCYQLPALLTPG 525
Query: 52 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS--- 108
V S LKS L + +L +++I +G + + E S
Sbjct: 526 ITIVVSPLKS---LILDQTQKLISLDIPAAHM-------SGDQTDSQTDAIYREMSKKDP 575
Query: 109 -LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
LKLLYV+PEKL+ S+ L +Y+ G L R IDE HC S WGHDFRPDY+ L +L+
Sbjct: 576 VLKLLYVTPEKLSASQKLCNALTALYERGLLGRFVIDEAHCVSQWGHDFRPDYKKLQVLR 635
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLD 227
+P+VP + LTATAT +V D+ L ++ + FNRPNL Y V K K+ D
Sbjct: 636 VKYPNVPTMALTATATPRVRTDILHQLGMQSPKWFMSSFNRPNLRYSVISKKG--KNASD 693
Query: 228 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------- 276
E+ L+ +F++ GI+Y S +C+ E+++ G++ YHA L
Sbjct: 694 EVIGLIKAKFKDDCGIVYCLSRNDCDTYAEQMKINGIKAMGYHAGLSDKQRSDIQGRWIS 753
Query: 277 -------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKPNVRFVIH L KS+E +YQ S G
Sbjct: 754 EQIKVVCATIAFGMGIDKPNVRFVIHASLPKSIEGYYQESGRAG 797
>gi|295673364|ref|XP_002797228.1| ATP-dependent DNA helicase Q1 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226282600|gb|EEH38166.1| ATP-dependent DNA helicase Q1 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1550
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 129/347 (37%), Positives = 185/347 (53%), Gaps = 34/347 (9%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRSV 58
YPWS V+S L +F L+ FR NQL AIN L KDA ++MPT Y V S
Sbjct: 677 YPWSKDVKSALLHRFGLSGFRLNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPAVVNSG 736
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAI-IIMPTGKLLKKKKICLMTESSS------LKL 111
+ L +A LK+ I + G + K+ K + + ++ ++L
Sbjct: 737 TTKGVTVVISPLLSLMEDQVAHLKELHIQAFLLNGDVSKEHKSLIYSALANPNVEKLIQL 796
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PE + K+ + + L ++ LARI IDE HC S WGHDFRPDY+ L + FP
Sbjct: 797 LYVTPEMVNKNGALLGALSHLHSRKKLARIVIDEAHCVSQWGHDFRPDYKELGNTRAKFP 856
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
+P++ LTATAT V +DV L + + V FNRPNL YEVR KP + ++ +A+
Sbjct: 857 GIPLMALTATATENVKIDVIHNLGMRNAEVFVQSFNRPNLTYEVRPKP-KNTNVIESIAE 915
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN-------------- 276
++ + Q+GIIY S + CE + +LR++ ++ + YHA L S
Sbjct: 916 TINESYSGQAGIIYCLSRQSCEKVAAQLRDKYKIKAAHYHAGLPSEERISIQRDWQSGKY 975
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDK +VRFVIHH + KS+E +YQ + G GK S
Sbjct: 976 NVIVATIAFGMGIDKADVRFVIHHTIPKSLEGYYQETGRAGRDGKRS 1022
>gi|380011350|ref|XP_003689771.1| PREDICTED: Bloom syndrome protein homolog [Apis florea]
Length = 1167
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 129/340 (37%), Positives = 178/340 (52%), Gaps = 39/340 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YPW 51
YP S + + + KF L FRPNQL AIN A+L D I+MPT P
Sbjct: 467 YPHSREMLKIFRQKFGLYSFRPNQLQAINAAILGFDCFILMPTGGGKSLCYQLPALLLPG 526
Query: 52 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
V S LKS L + +L +++I I + ++ L + +LKL
Sbjct: 527 VTIVISPLKS---LILDQVQKLTSLDIPATHMSGGITDSQALGIYRE---LSKKDPALKL 580
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEK++ S F L +Y LAR IDE HC S WGHDFRPDY+ L+ L+ +P
Sbjct: 581 LYVTPEKISASPKFCNILSSLYNRRLLARFVIDEAHCVSQWGHDFRPDYKKLNCLRENYP 640
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP++ LTATAT +V D+ L+I + FNRPNL Y + K + K+C DE+
Sbjct: 641 KVPVIVLTATATPRVRSDILHQLRITTPKWFMSSFNRPNLRYSIIAKKS--KNCSDEVIA 698
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--------------- 276
++ +++N GI+Y S K+C+D +R ++ +YHA L N
Sbjct: 699 MIKTKYKNDCGIVYCLSRKDCDDYAMHMRKNSIKALSYHAGLTDNNRSDIQGRWISEEIK 758
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKPNVRFVIH L KS+E +YQ S G
Sbjct: 759 VVCATIAFGMGIDKPNVRFVIHAALPKSIEGYYQESGRAG 798
>gi|260949491|ref|XP_002619042.1| hypothetical protein CLUG_00201 [Clavispora lusitaniae ATCC 42720]
gi|238846614|gb|EEQ36078.1| hypothetical protein CLUG_00201 [Clavispora lusitaniae ATCC 42720]
Length = 1408
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 128/351 (36%), Positives = 178/351 (50%), Gaps = 75/351 (21%)
Query: 40 DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK------ 93
+ I P + D V VL + F L DFRPNQL A+ AL KD +++PTG
Sbjct: 645 EGKTIPPNSGHFIDEVYDVLHNVFKLPDFRPNQLEAVVAALNGKDVFVLIPTGGGKSLCY 704
Query: 94 ----LLKKKK-----------ICLMTE--------------------------------S 106
L+K K I LM + S
Sbjct: 705 QLPALVKGGKTRGVTIVISPLISLMQDQVQHLRDRNINAAMISSRGTTEEKHAAIRELTS 764
Query: 107 SSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
L L+Y+SPE + S L K+Y++ LAR+ +DE HC SSWGHDFRPDYQ +S+
Sbjct: 765 GQLDLVYLSPEMVNSSNMIQRVLSKLYESNMLARVVVDEAHCVSSWGHDFRPDYQGMSLF 824
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
K FP+VPI+ LTATA KV LD+ L++++ V++K FNR NLFYEVR KP +
Sbjct: 825 KEKFPEVPIMALTATANEKVRLDIVHHLRMKNLVLLKQSFNRTNLFYEVRNKPP---NLY 881
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------- 276
+ + D + + ++GIIY S + CE ++L + G++ YHA ++ N
Sbjct: 882 EWIRDYVMGKMAGKTGIIYCHSKQSCETTAQKLNDWGIKCMYYHAGMDPNERFDVQTQWQ 941
Query: 277 --------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIH + KS+E +YQ + G GK S
Sbjct: 942 HNKIQLICATIAFGMGIDKPDVRFVIHMYIPKSLEGYYQETGRAGRDGKES 992
>gi|328778036|ref|XP_396209.4| PREDICTED: Bloom syndrome protein homolog, partial [Apis mellifera]
Length = 1179
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 129/340 (37%), Positives = 177/340 (52%), Gaps = 39/340 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YPW 51
YP S + + + KF L FRPNQL AIN A+L D I+MPT P
Sbjct: 596 YPHSREMLKIFRQKFGLYSFRPNQLQAINAAILGFDCFILMPTGGGKSLCYQLPALLLPG 655
Query: 52 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
V S LKS L + +L +++I I + ++ L + +LKL
Sbjct: 656 VTIVISPLKS---LILDQVQKLTSLDIPATHMSGGITDSQALGIYRE---LSKKDPALKL 709
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEK++ S F L +Y LAR IDE HC S WGHDFRPDY+ L+ L+ +P
Sbjct: 710 LYVTPEKISASPKFCNILSSLYNRRLLARFVIDEAHCVSQWGHDFRPDYKRLNCLRENYP 769
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP++ LTATAT +V D+ L+I + FNRPNL Y + K K+C DE+
Sbjct: 770 KVPVIVLTATATPRVRSDILHQLRITTPKWFMSSFNRPNLRYSIIAKKG--KNCSDEVIG 827
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--------------- 276
++ +++N GI+Y S K+C+D +R ++ +YHA L N
Sbjct: 828 MIKTKYKNDCGIVYCLSRKDCDDYAMHMRKNSIKALSYHAGLTDNNRSDIQGRWISEEIK 887
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKPNVRFVIH L KS+E +YQ S G
Sbjct: 888 VVCATIAFGMGIDKPNVRFVIHAALPKSIEGYYQESGRAG 927
>gi|168052509|ref|XP_001778692.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669907|gb|EDQ56485.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 521
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 122/326 (37%), Positives = 173/326 (53%), Gaps = 36/326 (11%)
Query: 16 KSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSDRVRSVLKSKFNL 65
K F FR NQ IN + +D ++MPT S V V+ +L
Sbjct: 7 KKFFGNKSFRLNQREIINATMSGRDVFVLMPTGGGKSLTYQLPAICSAGVTLVVSPLVSL 66
Query: 66 TDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSF 125
+ L+ NI A + T + ++ +I ++ KLLYV+PEK+A+S
Sbjct: 67 IMDQIMHLSEANIP-----AAYLSGTMEWQEQNEILRNLDAGVYKLLYVTPEKIARSDRL 121
Query: 126 MTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTK 185
L +Y LARI +DE HC S WGHDFRPDYQ L + K FPDVP++ LTATAT
Sbjct: 122 SQHLTSLYDQRLLARIVVDEAHCVSQWGHDFRPDYQNLGVFKERFPDVPLIALTATATLS 181
Query: 186 VMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIY 245
V DV + L++ C++ + FNRPNL YEV K K CL+++ + R N+SGIIY
Sbjct: 182 VKEDVVRALKLTRCIIFRQTFNRPNLRYEVLPKS---KKCLEDIDKFIRERHPNESGIIY 238
Query: 246 TTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDK 287
S +CE + E+LR G +V+ YH +++ + ++AFG+GI+K
Sbjct: 239 CLSRSDCEKVTEKLREFGHKVAFYHGQMDPDERSYVQRMWSKDEVNIICATVAFGMGINK 298
Query: 288 PNVRFVIHHCLSKSMENFYQVSIAFG 313
P+VRFVIHH L KS+E ++Q S G
Sbjct: 299 PDVRFVIHHSLPKSLEGYHQESGRAG 324
>gi|11121449|emb|CAC14868.1| DNA Helicase [Arabidopsis thaliana]
Length = 1182
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 121/329 (36%), Positives = 164/329 (49%), Gaps = 72/329 (21%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLLKKKK---IC- 101
++PW+ ++ K F FRPNQ IN + D ++MPT GK L + IC
Sbjct: 428 EFPWTRKLEVNNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICG 487
Query: 102 ---------------------------------------------LMTESSSLKLLYVSP 116
L +E S KLLYV+P
Sbjct: 488 GITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTP 547
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKS S + L+ + G LAR IDE HC S WGHDFRPDYQ L ILK FP++P+L
Sbjct: 548 EKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVL 607
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATAT V DV + L + +CVV + FNRPNL+Y V K K CL+++ +
Sbjct: 608 ALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPK---TKKCLEDIDKFIKEN 664
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ GIIY S +CE + E L+ G + + YH +E +
Sbjct: 665 HFDECGIIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICAT 724
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+AFG+GI+KP+VRFVIHH L KS+E ++Q
Sbjct: 725 VAFGMGINKPDVRFVIHHSLPKSIEGYHQ 753
>gi|30681987|ref|NP_172562.2| ATP-dependent DNA helicase Q-like 4A [Arabidopsis thaliana]
gi|75329797|sp|Q8L840.1|RQL4A_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 4A; AltName:
Full=RecQ-like protein 4A; Short=AtRecQ4A;
Short=AtRecQl4A; AltName: Full=SGS1-like protein;
Short=AtSGS1
gi|21539533|gb|AAM53319.1| DNA helicase isolog [Arabidopsis thaliana]
gi|33589672|gb|AAQ22602.1| At1g10930 [Arabidopsis thaliana]
gi|332190544|gb|AEE28665.1| ATP-dependent DNA helicase Q-like 4A [Arabidopsis thaliana]
Length = 1188
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 121/329 (36%), Positives = 164/329 (49%), Gaps = 72/329 (21%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLLKKKK---IC- 101
++PW+ ++ K F FRPNQ IN + D ++MPT GK L + IC
Sbjct: 434 EFPWTRKLEVNNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICG 493
Query: 102 ---------------------------------------------LMTESSSLKLLYVSP 116
L +E S KLLYV+P
Sbjct: 494 GITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTP 553
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKS S + L+ + G LAR IDE HC S WGHDFRPDYQ L ILK FP++P+L
Sbjct: 554 EKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVL 613
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATAT V DV + L + +CVV + FNRPNL+Y V K K CL+++ +
Sbjct: 614 ALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPK---TKKCLEDIDKFIKEN 670
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ GIIY S +CE + E L+ G + + YH +E +
Sbjct: 671 HFDECGIIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICAT 730
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+AFG+GI+KP+VRFVIHH L KS+E ++Q
Sbjct: 731 VAFGMGINKPDVRFVIHHSLPKSIEGYHQ 759
>gi|297849458|ref|XP_002892610.1| DNA helicase [Arabidopsis lyrata subsp. lyrata]
gi|297338452|gb|EFH68869.1| DNA helicase [Arabidopsis lyrata subsp. lyrata]
Length = 1189
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 121/329 (36%), Positives = 164/329 (49%), Gaps = 72/329 (21%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLLKKKK---IC- 101
++PW+ ++ K F FRPNQ IN + D ++MPT GK L + IC
Sbjct: 432 EFPWTRKLEVNNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICG 491
Query: 102 ---------------------------------------------LMTESSSLKLLYVSP 116
L +E S KLLYV+P
Sbjct: 492 GITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTP 551
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKS S + L+ + G LAR IDE HC S WGHDFRPDYQ L ILK FP++P+L
Sbjct: 552 EKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVL 611
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATAT V DV + L + +CVV + FNRPNL+Y V K K CL+++ +
Sbjct: 612 ALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPK---TKKCLEDIDKFIKEN 668
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ GIIY S +CE + E L+ G + + YH +E +
Sbjct: 669 HFDECGIIYCLSRMDCEKVSERLQEFGHKTAFYHGSMEPEQRAFIQTQWSKDEINIICAT 728
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+AFG+GI+KP+VRFVIHH L KS+E ++Q
Sbjct: 729 VAFGMGINKPDVRFVIHHSLPKSIEGYHQ 757
>gi|383859981|ref|XP_003705470.1| PREDICTED: Bloom syndrome protein homolog [Megachile rotundata]
Length = 1362
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 126/340 (37%), Positives = 177/340 (52%), Gaps = 39/340 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YPW 51
Y S + + + KF L FRPNQL AIN A+L D ++MPT P
Sbjct: 623 YTHSREMLKIFRQKFGLYSFRPNQLQAINAAMLGFDCFVLMPTGGGKSLCYQLPALLLPG 682
Query: 52 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
V S LKS L + +L +++I I + ++ L + +LKL
Sbjct: 683 VTIVISPLKS---LILDQVQKLTSLDIPAAHLSGTITDAQADAIYRE---LSKKDPALKL 736
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEK++ S+ F L +Y+ G LA+ IDE HC S WGHDFRPDY+ L +L+ +
Sbjct: 737 LYVTPEKISASQKFCNLLSSLYERGLLAKFVIDEAHCVSQWGHDFRPDYKRLKMLRENYT 796
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
V ++ LTATAT +V D+ L + + FNRPNL Y + K K+C DE+
Sbjct: 797 KVGMIALTATATPRVRTDILHQLGLTRPKWFMSSFNRPNLRYSIITKKG--KNCSDEVIA 854
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--------------- 276
++ +++N GI+Y S KEC+D ++R G++ YHA L N
Sbjct: 855 MIKTKYKNDCGIVYCLSRKECDDYAVQMRKNGIKALGYHAGLTDNNRSNIQGRWISEEIK 914
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKPNVRFVIH L KS+E +YQ S G
Sbjct: 915 VVCATIAFGMGIDKPNVRFVIHAALPKSIEGYYQESGRAG 954
>gi|358339333|dbj|GAA38465.2| bloom syndrome protein homolog [Clonorchis sinensis]
Length = 949
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 128/336 (38%), Positives = 176/336 (52%), Gaps = 42/336 (12%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
+P S ++ F L FR NQL AIN ALL D +IMPT S ++ + ++
Sbjct: 199 FPHSAKMMEAFSKLFGLKSFRRNQLQAINAALLGLDCFVIMPTGGGKSLCYQLPAAVQDG 258
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMP-TGKLLKKKKICLMTESSSL-----------K 110
L L + ++ I+ TG+ MTES + K
Sbjct: 259 LTLVISPLKALVLDQVTKMQSLGIVAAHLTGE-------ATMTESDRVYASLHLATLRTK 311
Query: 111 LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170
LLYV+PEK+A S L+++Y+ L R IDE HC S WGHDFRPDY+ LSIL+T F
Sbjct: 312 LLYVTPEKIAASDKLKGCLEQLYRRNLLQRFVIDEAHCVSQWGHDFRPDYRNLSILRTNF 371
Query: 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA 230
P VP++ +TATAT +V D+ L++++ FNR NL +EVR P K C E+
Sbjct: 372 PKVPMMAMTATATPRVREDILHQLKMKNTKWFIQSFNRTNLKFEVR--PKKLKSCTKEII 429
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN-------------- 276
+++ F +SGI+Y S +EC+ + EEL GL SAYHA +
Sbjct: 430 EVIHSEFPRRSGIVYCLSRRECDLVAEELSRAGLAASAYHAGMTDAQRRRIQEAWIQEDK 489
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIHH L KS+E +YQ
Sbjct: 490 CKIVCATIAFGMGIDKPDVRFVIHHSLPKSIEGYYQ 525
>gi|22651415|gb|AAL05260.1| QDE3-like protein [Blumeria graminis]
Length = 1632
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 132/348 (37%), Positives = 184/348 (52%), Gaps = 34/348 (9%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRSV 58
+PWS V+ +LK +F L FR +QL AIN L +DA I+MPT Y V+S
Sbjct: 781 HPWSKDVKKMLKERFKLKGFRHHQLEAINATLNGEDAFILMPTGGGKSLCYQLPAVVQSG 840
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMP-TGKLLKKKKICLMTE------SSSLKL 111
+ L + L+K++I G ++ +M ++L
Sbjct: 841 KTKGVTIVVSPLLSLMHDQVEHLRKNSIQAATINGDTDSAERREIMNNLRQQHPEQHIQL 900
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PE +++S L + + LAR IDE HC S WGHDFR +Y LS L+ FP
Sbjct: 901 LYVTPEMVSQSGQMGDILSSLNQRSKLARFVIDEAHCVSQWGHDFRKEYIALSRLRKDFP 960
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQ-KDCLDELA 230
VPI+ LTATAT V DV L + + FNRPNL+YEVR K + + L E+A
Sbjct: 961 SVPIMALTATATENVKNDVISNLGMGKPPIFSQSFNRPNLYYEVRPKSGRKMPELLKEIA 1020
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN------------- 276
DL++R++R Q+GIIYT S K CED+ ++L + V YHA ++S
Sbjct: 1021 DLVTRKYRGQTGIIYTLSRKGCEDMAKKLSKEFNISVHYYHAGMKSEEKTKVTRDWQSGK 1080
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIH+ + KS+E +YQ + G GK S
Sbjct: 1081 LQVVVATIAFGMGIDKPDVRFVIHYTIPKSLEGYYQETGRAGRDGKKS 1128
>gi|218194880|gb|EEC77307.1| hypothetical protein OsI_15961 [Oryza sativa Indica Group]
Length = 2505
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 184/339 (54%), Gaps = 43/339 (12%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
++ W+ + + K F FRPNQ IN + D ++MPT S +
Sbjct: 1744 HFAWTKELEANNKRVFGNRSFRPNQREIINATMSGNDVFVLMPTGGGKSLTYQLPALICN 1803
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC--LMTESSSLKL 111
V V+ +L + L NI+ A + + + ++++I LM+ + + KL
Sbjct: 1804 GVTLVVSPLVSLIQDQIMHLLQANIS-----AAYLSASMEWSEQQEILRELMSPTCTYKL 1858
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQY-----LSIL 166
LYV+PEK+AKS + + +L+ +Y G L+RI IDE HC S WGHDFRPDYQ+ L IL
Sbjct: 1859 LYVTPEKIAKSDALLRQLENLYSRGHLSRIVIDEAHCVSQWGHDFRPDYQFFIHQHLGIL 1918
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
K FP P+L LTATAT V DV ++L + +C++ + FNRPNL Y V K K CL
Sbjct: 1919 KQKFPQTPVLALTATATASVKEDVVQVLGLANCIIFRQSFNRPNLRYFVWPK---TKKCL 1975
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE----SNV----- 277
+++ + + + GIIY S +CE + +LR G + S YH ++ +N+
Sbjct: 1976 EDIHNFIHANHNKECGIIYCLSRMDCEKVAAKLREYGHKASHYHGSMDPEDRANIQKQWS 2035
Query: 278 ---------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KP+VRFVIHH L KS+E ++Q
Sbjct: 2036 KDRINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 2074
>gi|225448193|ref|XP_002265586.1| PREDICTED: ATP-dependent DNA helicase Q-like 4A-like [Vitis
vinifera]
Length = 1224
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 174/332 (52%), Gaps = 36/332 (10%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSD 53
N+PW+ ++ + K F FRPNQ IN + D ++MPT S
Sbjct: 408 NFPWTKKLEANNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALISP 467
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLY 113
+ V+ +L + L NI A + + + ++++I S KLLY
Sbjct: 468 GITLVISPLVSLIQDQIMHLLQANIP-----AAYLSASMEWNEQQEILRELSSCKYKLLY 522
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
+PEK+AKS M L ++ L+RI IDE HC S WGHDFRPDYQ L ILK FP+
Sbjct: 523 ATPEKVAKSDVLMRNLDNLHARELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNT 582
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
P+L LTATAT V DV + L + +C++ + FNRPNL+Y V K + CLD++ +
Sbjct: 583 PVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWYSVLPK---TRKCLDDIDKFI 639
Query: 234 SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL---------------ESNV- 277
++ GIIY S +CE + E L+ G + + YH + E N+
Sbjct: 640 RENHFDECGIIYCLSRLDCEKVAERLQECGHKAAFYHGSMDPARRAFVQKQWSKDEINII 699
Query: 278 --SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KP+VRFVIHH L KS+E ++Q
Sbjct: 700 CATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 731
>gi|169618104|ref|XP_001802466.1| hypothetical protein SNOG_12240 [Phaeosphaeria nodorum SN15]
gi|160703551|gb|EAT80652.2| hypothetical protein SNOG_12240 [Phaeosphaeria nodorum SN15]
Length = 1681
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/351 (35%), Positives = 182/351 (51%), Gaps = 42/351 (11%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP-----------WS 52
N+PWS +R+ L +F L FRP QL AIN L + ++MPT S
Sbjct: 754 NFPWSQDLRNTLIHRFGLRGFRPGQLDAINATLGGEHCFVLMPTGGGKSLCYQLPAVITS 813
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMT------ES 106
+ + V L +Q+ + A+ + + + G+ + +K +M
Sbjct: 814 GKTQGVTIVVSPLLSLMEDQVTS---AMERFNVQAFLINGESTQAQKTHIMEGLRERDPQ 870
Query: 107 SSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
++LLYV+PE L+K++ ++ Q+++ LARI IDE HC S WGHDFRPDY+ L +
Sbjct: 871 KFMQLLYVTPEMLSKNQRMISAFQQLHSRRRLARIVIDEAHCVSQWGHDFRPDYKALGDV 930
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
FP VP++ LTATAT V DV L I+ C FNRPNL YEV K K+ +
Sbjct: 931 VRQFPGVPVIALTATATQLVRTDVVANLGIQGCRQFSQSFNRPNLSYEVLPK---SKNII 987
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------- 276
+++A L+ + +SGIIY S K CE + E+L N G+ YHA +E
Sbjct: 988 NDIAKLIKEKHDKKSGIIYCLSRKSCEQVAEKLSNLGISAFHYHAGMEPAERSAVQRKWQ 1047
Query: 277 --------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDK +VR+V+HH L KS+E +YQ + G GK S
Sbjct: 1048 HNEYHVIVATIAFGMGIDKADVRYVVHHTLPKSLEGYYQETGRAGRDGKRS 1098
>gi|297739574|emb|CBI29756.3| unnamed protein product [Vitis vinifera]
Length = 1235
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 174/332 (52%), Gaps = 36/332 (10%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSD 53
N+PW+ ++ + K F FRPNQ IN + D ++MPT S
Sbjct: 419 NFPWTKKLEANNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALISP 478
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLY 113
+ V+ +L + L NI A + + + ++++I S KLLY
Sbjct: 479 GITLVISPLVSLIQDQIMHLLQANIP-----AAYLSASMEWNEQQEILRELSSCKYKLLY 533
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
+PEK+AKS M L ++ L+RI IDE HC S WGHDFRPDYQ L ILK FP+
Sbjct: 534 ATPEKVAKSDVLMRNLDNLHARELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNT 593
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
P+L LTATAT V DV + L + +C++ + FNRPNL+Y V K + CLD++ +
Sbjct: 594 PVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWYSVLPK---TRKCLDDIDKFI 650
Query: 234 SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL---------------ESNV- 277
++ GIIY S +CE + E L+ G + + YH + E N+
Sbjct: 651 RENHFDECGIIYCLSRLDCEKVAERLQECGHKAAFYHGSMDPARRAFVQKQWSKDEINII 710
Query: 278 --SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KP+VRFVIHH L KS+E ++Q
Sbjct: 711 CATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 742
>gi|367009466|ref|XP_003679234.1| hypothetical protein TDEL_0A06910 [Torulaspora delbrueckii]
gi|359746891|emb|CCE90023.1| hypothetical protein TDEL_0A06910 [Torulaspora delbrueckii]
Length = 1364
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 123/349 (35%), Positives = 180/349 (51%), Gaps = 77/349 (22%)
Query: 45 MPTD--YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK------- 93
+PT+ +PWS V L+ F L FRP+QL AIN L KD ++MPT GK
Sbjct: 585 LPTESRHPWSAEVEYRLREIFKLPGFRPHQLEAINATLSGKDVFVLMPTGGGKSLCYQLP 644
Query: 94 -LLKKKK-----------ICLMTESSS--------------------------------L 109
++K K I LM + L
Sbjct: 645 AVVKSGKTKGTTIVISPLISLMQDQVEHLLSNNIKASMFSSKGTAEQRRQTFNLFIHGLL 704
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169
L+Y+SPE ++ S+ + K+Y G LARI +DE HC S+WGHDFRPDY+ L K
Sbjct: 705 DLIYISPEMISASEQCKRGINKLYNDGKLARIVVDEAHCVSNWGHDFRPDYKELKYFKRE 764
Query: 170 FPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDEL 229
+PDVP++ LTATA+ +V +D+ L++++ V +K FNR NLFYE+ K K+ + E+
Sbjct: 765 YPDVPMIALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLFYEILKKT---KNSIFEI 821
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------- 276
D + RFRNQ+GIIY S CE +++ G++ + YHA +E +
Sbjct: 822 CDTIKIRFRNQTGIIYCHSKNSCEQTAAQMQRSGIKCAFYHAGMEPDDRLTIQKAWQADE 881
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GIDKP+VRFV H + +++E +YQ + G GK S+
Sbjct: 882 IQVICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGKFSY 930
>gi|222628902|gb|EEE61034.1| hypothetical protein OsJ_14872 [Oryza sativa Japonica Group]
Length = 2486
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 183/339 (53%), Gaps = 43/339 (12%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
++ W+ + + K F FRPNQ IN + D ++MPT S +
Sbjct: 1725 HFAWTKELEANNKRVFGNRSFRPNQREIINATMSGNDVFVLMPTGGGKSLTYQLPALICN 1784
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC--LMTESSSLKL 111
V V+ +L + L NI+ A + + + ++++I LM+ + + KL
Sbjct: 1785 GVTLVVSPLVSLIQDQIMHLLQANIS-----AAYLSASMEWSEQQEILRELMSPTCTYKL 1839
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQY-----LSIL 166
LYV+PEK+AKS + + +L+ +Y G L+RI IDE HC S WGHDFRPDYQ+ L IL
Sbjct: 1840 LYVTPEKIAKSDALLRQLENLYSRGHLSRIVIDEAHCVSQWGHDFRPDYQFFIHQHLGIL 1899
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
K FP P+L LTATAT V DV ++L + +C++ + FNRPNL Y V K K CL
Sbjct: 1900 KQKFPQTPVLALTATATASVKEDVVQVLGLANCIIFRQSFNRPNLRYFVWPK---TKKCL 1956
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE----SNV----- 277
+++ + + + GIIY S +CE + +LR G S YH ++ +N+
Sbjct: 1957 EDIHNFIHANHNKECGIIYCLSRMDCEKVAAKLREYGHTASHYHGSMDPEDRANIQKQWS 2016
Query: 278 ---------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KP+VRFVIHH L KS+E ++Q
Sbjct: 2017 KDRINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 2055
>gi|255579679|ref|XP_002530679.1| DNA helicase hus2, putative [Ricinus communis]
gi|223529772|gb|EEF31710.1| DNA helicase hus2, putative [Ricinus communis]
Length = 1233
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/334 (35%), Positives = 176/334 (52%), Gaps = 38/334 (11%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
N+PW+ ++ + K F FRPNQ IN + D ++MPT S
Sbjct: 440 NFPWTTKLEAYNKKVFGNHSFRPNQREVINATMSGFDVFVLMPTGGGKSLTYQLPALVCP 499
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC--LMTESSSLKL 111
+ V+ +L + L NI+ A + + ++++I L ++ KL
Sbjct: 500 GITLVISPLVSLIQDQIMHLLQANIS-----AAYLSANMEWAEQQEILRELSSDYCKYKL 554
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEK+AKS + L+ + G LARI IDE HC S WGHDFRPDY+ L ILK F
Sbjct: 555 LYVTPEKVAKSDVLLRNLESLNARGLLARIVIDEAHCVSQWGHDFRPDYKELGILKKKFE 614
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
P+L LTATAT V DV + L + DC++ + FNRPNL+Y V K K CLD++
Sbjct: 615 KTPVLALTATATASVKEDVVQALGLVDCIIFRQSFNRPNLWYSVVPKT---KKCLDDIDK 671
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--------------- 276
+ ++ GIIY S +CE + E+L+ G + + YH +++
Sbjct: 672 FIKENHFDECGIIYCLSRMDCEKVAEKLQECGHKAAFYHGNMDAAQRAFVQKQWSKDEIN 731
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KP+VRFVIHH L KS+E ++Q
Sbjct: 732 IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 765
>gi|170587310|ref|XP_001898420.1| ATP-dependent DNA helicase, RecQ family protein [Brugia malayi]
gi|158594144|gb|EDP32732.1| ATP-dependent DNA helicase, RecQ family protein [Brugia malayi]
Length = 585
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 168/335 (50%), Gaps = 93/335 (27%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG--------------- 92
++ W R +L F L+DFRP Q A IN L ++D +++M TG
Sbjct: 68 EFQWMKDCRRILHDIFKLSDFRPLQRAVINAVLSREDCLVVMSTGSGKSLCYQLPAVVMK 127
Query: 93 ------------------------------------KLLKKKKICLMTESSSLKLLYVSP 116
+ + + + L +SL+LLYV+P
Sbjct: 128 GIVLVISPLVALIEDQLHQLRKLGIDAATLNQSTAKQEVNRIQTALTDSKASLRLLYVTP 187
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EKLAKSK M +L+K + L IA+DEVHCCS WGHDFRPD+++L++LK F VP++
Sbjct: 188 EKLAKSKRIMNRLEKCNEMKRLKLIAVDEVHCCSQWGHDFRPDFKFLNVLKRQFQAVPLI 247
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ DV+ ML I VV +A FNRPNL Y V KP++ + +D L +L+
Sbjct: 248 GLTATATADVIDDVKNMLGIPAAVVFRAGFNRPNLHYSVCQKPSSDAEFVDILVELI--- 304
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
+ R +G++ S YHA L++ +
Sbjct: 305 ---------------------KTRAKGVKASHYHAFLDAGKRNITHEKWLNGGINVIVAT 343
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKPNVR+VIHH L KS+EN+YQ S G
Sbjct: 344 VAFGMGIDKPNVRYVIHHSLPKSLENYYQESGRVG 378
>gi|332023927|gb|EGI64145.1| Bloom syndrome protein-like protein [Acromyrmex echinatior]
Length = 1254
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 126/340 (37%), Positives = 177/340 (52%), Gaps = 39/340 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS------------ 52
Y S + + + +F L FRPNQL AIN LL D I+MPT S
Sbjct: 511 YSHSQEMLKIFRQRFGLYTFRPNQLQAINATLLGFDCFILMPTGGGKSLCYQLPALLNVG 570
Query: 53 -DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
V S LKS L + +L +++I I + + ++ L + +LK+
Sbjct: 571 LTIVISPLKS---LILDQVQKLISLDIPAAHLSGSITDNQAEAIYRE---LSKKEPALKI 624
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEK++ S+ F L +Y+ L R IDE HC S WGHDFRPDY+ L L+ +P
Sbjct: 625 LYVTPEKISASQKFCNTLTILYERELLTRFVIDEAHCVSQWGHDFRPDYKKLKCLRNNYP 684
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP + LTATAT +V D+ L + + + FNRPNL Y + K K+C DE+
Sbjct: 685 KVPTMALTATATPRVRTDILHQLGMTNPKWFMSSFNRPNLRYSIISKKG--KNCSDEIVA 742
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--------------- 276
++ +F+N GI+Y S K+CED ++ G++V +YHA L
Sbjct: 743 MIMTKFKNTCGIVYCLSRKDCEDYAAHMKKNGIKVLSYHAGLSDTQRSNCQGKWISDEVH 802
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKPNVRFVIH L KS+E++YQ S G
Sbjct: 803 VICATIAFGMGIDKPNVRFVIHAALPKSIESYYQESGRAG 842
>gi|297837387|ref|XP_002886575.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297332416|gb|EFH62834.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1172
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 120/347 (34%), Positives = 175/347 (50%), Gaps = 64/347 (18%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------- 52
++PW+ + K F FRPNQ IN + D ++MPT S
Sbjct: 475 DFPWTKNLEVYNKIVFGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALLCA 534
Query: 53 --------------DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKK 98
D++ ++L++ + A + +L++
Sbjct: 535 GITLVISPLVSLIQDQIMNLLQTNISAASLSAGMEWAEQLEILQE--------------- 579
Query: 99 KICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRP 158
L +E+S KLLYV+PEK+AKS+S + L+ + LAR IDE HC S WGHDFRP
Sbjct: 580 ---LSSENSKYKLLYVTPEKVAKSESLIRHLEILNSRSLLARFVIDEAHCVSQWGHDFRP 636
Query: 159 DYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIK 218
DYQ L +LK FP++P+L LTATATT V DV + L + +CVV + FNRPNL+Y V
Sbjct: 637 DYQGLGVLKQKFPNIPMLALTATATTSVKEDVVQALGLVNCVVFRQSFNRPNLWYSV--V 694
Query: 219 PAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN-- 276
P K CL+++ + ++ GIIY S +CE + E LR G + + YH ++
Sbjct: 695 PKTNK-CLEDIDKFIRENHFDECGIIYCLSRMDCEKVTEMLRAFGHKAAFYHGSMDPGKR 753
Query: 277 ----------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KP+VRFVIHH L KS+E ++Q
Sbjct: 754 AFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 800
>gi|170042287|ref|XP_001848863.1| ATP-dependent DNA helicase hus2 [Culex quinquefasciatus]
gi|167865792|gb|EDS29175.1| ATP-dependent DNA helicase hus2 [Culex quinquefasciatus]
Length = 1437
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 120/338 (35%), Positives = 167/338 (49%), Gaps = 78/338 (23%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC-----LM 103
YP SD ++ V + F L FRPNQL IN LL D ++MPTG K +C +M
Sbjct: 678 YPHSDTLQIVFRETFGLRSFRPNQLQVINATLLGHDCFVLMPTGG---GKSLCYQLPAIM 734
Query: 104 TESSS-------------------------------------------------LKLLYV 114
TE + LKLLYV
Sbjct: 735 TEGVTIVVSPLKSLIHDQVNKLGSLDIPAAHLSGEVSYADQQKIYADLSSPKPVLKLLYV 794
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PEK++ S F L ++Y+ L R IDE HC S+WGHDFRPDY+ LS+L+ FP +P
Sbjct: 795 TPEKISSSGRFQNILTELYRMKQLGRFVIDEAHCVSAWGHDFRPDYKKLSVLREQFPTIP 854
Query: 175 ILGLTATATTKVMLDVQKMLQI-EDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
++ LTATA +V +DV K L + + FNRPNL Y +R K E+ +L+
Sbjct: 855 VMALTATANPRVRIDVLKQLGLGRNTKWFLCSFNRPNLKYIIRPKQGVATKA--EIMELI 912
Query: 234 SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------- 276
++F +GI+Y S K+C+ L E+R G++ +YHA L
Sbjct: 913 KKKFPRATGIVYCLSKKDCDQLSAEMRCAGIKAKSYHAGLGDAEREATQKDWITDKIKVV 972
Query: 277 -VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VR+VIHH + KS+E +YQ + G
Sbjct: 973 CATIAFGMGIDKPDVRYVIHHSMPKSIEGYYQEAGRAG 1010
>gi|367004206|ref|XP_003686836.1| hypothetical protein TPHA_0H01970 [Tetrapisispora phaffii CBS 4417]
gi|357525138|emb|CCE64402.1| hypothetical protein TPHA_0H01970 [Tetrapisispora phaffii CBS 4417]
Length = 1355
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 116/341 (34%), Positives = 178/341 (52%), Gaps = 75/341 (21%)
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK--------------- 93
W++ V+S L+ F L FRPNQ A+N L KD ++MPT GK
Sbjct: 584 WTNEVKSKLQEVFKLPGFRPNQEDAVNATLSGKDVFVLMPTGGGKSLCYQLPAIIKSGNT 643
Query: 94 ---------------------LLKKKKICLMTESSS---------------LKLLYVSPE 117
L K K + + + L L+Y+SPE
Sbjct: 644 KGTTIVVSPLISLMQDQVDHLLAKNIKASMFSSKGTADQRRQTFNLFIHGLLDLIYISPE 703
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
++ S+ + K+++ G LARI +DE HC S+WGHDFRPDY+ L K +P++P++
Sbjct: 704 MISASEQCKRAIAKLHEDGNLARIVVDEAHCVSNWGHDFRPDYKELKFFKGEYPNIPMMA 763
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATA+ +V +D+ L+++D V +K FNR NL+YE+ IK + K+ + E++D + RRF
Sbjct: 764 LTATASEQVRMDIIHNLKLKDPVFLKQSFNRTNLYYEI-IKKS--KNTIFEMSDDIKRRF 820
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSI 279
RNQ+GIIY S CE ++ G++ + YHA +E + ++
Sbjct: 821 RNQTGIIYCHSKNSCEQTSAQMERAGIKCAYYHAGMEPDDRLKVQKAWQADEVQVICATV 880
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
AFG+GIDKP+VRFV H + +++E +YQ + G GK S+
Sbjct: 881 AFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGKFSY 921
>gi|334183459|ref|NP_176289.7| RECQ helicase L4B [Arabidopsis thaliana]
gi|75334305|sp|Q9FT70.1|RQL4B_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 4B; AltName:
Full=RecQ-like protein 4B; Short=AtRecQ4B;
Short=AtRecQl4B
gi|11121451|emb|CAC14869.1| DNA Helicase [Arabidopsis thaliana]
gi|332195628|gb|AEE33749.1| RECQ helicase L4B [Arabidopsis thaliana]
Length = 1150
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 120/347 (34%), Positives = 174/347 (50%), Gaps = 64/347 (18%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------- 52
++PW+ + K F FRPNQ IN + D ++MPT S
Sbjct: 450 DFPWTKNLEVYNKLVFGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALLCA 509
Query: 53 --------------DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKK 98
D++ ++L++ + A + +L++
Sbjct: 510 GITLVISPLVSLIQDQIMNLLQTNISAASLSAGMEWAEQLEILQE--------------- 554
Query: 99 KICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRP 158
L +E S KLLYV+PEK+AKS+S + L+ + LAR IDE HC S WGHDFRP
Sbjct: 555 ---LSSEKSKYKLLYVTPEKVAKSESLLRHLEILNSRSLLARFVIDEAHCVSQWGHDFRP 611
Query: 159 DYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIK 218
DYQ L +LK FP++P+L LTATATT V DV + L + +CVV + FNRPNL+Y V
Sbjct: 612 DYQGLGVLKQKFPNIPMLALTATATTSVKEDVVQALGLVNCVVFRQSFNRPNLWYSV--V 669
Query: 219 PAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN-- 276
P K CL+++ + ++ GIIY S +CE + E LR G + + YH ++
Sbjct: 670 PKTNK-CLEDIDKFIRENHFDECGIIYCLSRMDCEKVTEALRVFGHKAAFYHGSMDPGKR 728
Query: 277 ----------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KP+VRFVIHH L KS+E ++Q
Sbjct: 729 AFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 775
>gi|1931649|gb|AAB65484.1| DNA helicase isolog; 74946-78841 [Arabidopsis thaliana]
Length = 665
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 124/320 (38%), Positives = 167/320 (52%), Gaps = 34/320 (10%)
Query: 16 KSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFNL 65
K F FRPNQ IN + D ++MPT S + V+ +L
Sbjct: 117 KKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGITLVISPLVSL 176
Query: 66 TDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSF 125
+ L NI A M + LK + L +E S KLLYV+PEK+AKS S
Sbjct: 177 IQDQIMNLLQANIPAASLSAG--MEWAEQLKIFQE-LNSEHSKYKLLYVTPEKVAKSDSL 233
Query: 126 MTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTK 185
+ L+ + G LAR IDE HC S WGHDFRPDYQ L ILK FP++P+L LTATAT
Sbjct: 234 LRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATAS 293
Query: 186 VMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIY 245
V DV + L + +CVV + FNRPNL+Y V K K CL+++ + ++ GIIY
Sbjct: 294 VKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKT---KKCLEDIDKFIKENHFDECGIIY 350
Query: 246 TTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDK 287
S +CE + E L+ G + + YH +E ++AFG+GI+K
Sbjct: 351 CLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINK 410
Query: 288 PNVRFVIHHCLSKSMENFYQ 307
P+VRFVIHH L KS+E ++Q
Sbjct: 411 PDVRFVIHHSLPKSIEGYHQ 430
>gi|345564877|gb|EGX47836.1| hypothetical protein AOL_s00083g48 [Arthrobotrys oligospora ATCC
24927]
Length = 1720
Score = 207 bits (526), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 180/343 (52%), Gaps = 36/343 (10%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS-----DRVRSV 58
N+PWS V LK+ F L FR NQL AIN L D ++MPT S V S
Sbjct: 862 NHPWSTDVARALKTTFKLKGFRANQLEAINATLGGNDVFVLMPTGGGKSLCYQLPAVVSS 921
Query: 59 LKSK---------FNLTDFRPNQLAAINI-ALLKKDAIIIMPTGKLLKKKKICLMTESSS 108
K+K +L + + + L A+ I A + +I ++LK+ K ++S
Sbjct: 922 GKTKGITFVISPLLSLMEDQVDHLGALKIRAFMFNSSITAEERREILKELKSP--DAATS 979
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
++LLYV+PE LA SK + ++K +AR+ IDE HC S WGHDFR DY+ L L+T
Sbjct: 980 IQLLYVTPEMLASSKMMEAAMGSLHKRNLIARVVIDEAHCVSQWGHDFRKDYKELGKLRT 1039
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
VP + LTATAT +V D+ + L I C K FNRPNL YEV ++ + +
Sbjct: 1040 GLRGVPFMALTATATPQVQQDLMRNLSITKCKTFKQSFNRPNLVYEV-LEKVKGGQVVQD 1098
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
+ +L+ ++ + GI+Y S +CE + L+ + + YHA L ++
Sbjct: 1099 IINLIQTSYKGKCGIVYCLSKNDCEQVSSHLQKARILANFYHAGLTTDERRNVQKRWQCG 1158
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G
Sbjct: 1159 ELKVIVATIAFGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAG 1201
>gi|323455269|gb|EGB11138.1| hypothetical protein AURANDRAFT_52627 [Aureococcus anophagefferens]
Length = 616
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 137/217 (63%), Gaps = 19/217 (8%)
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169
++++V+PE++A SK + L+K KAG LAR IDE HC S+WGHD+RPDY L L+T
Sbjct: 175 RVVFVTPERVASSKRLLATLEKCEKAGRLARFVIDEAHCASAWGHDYRPDYAKLGSLRTA 234
Query: 170 FPDVPILGLTATATTKVMLDVQKMLQI-EDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
FP VPIL LTATAT +V+ DV+++L + V + +RPNLF+EVR KPAA+ D +
Sbjct: 235 FPRVPILALTATATPRVLRDVEEILGLGRRTVRFRGKSDRPNLFFEVRRKPAAKDDAVAA 294
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
LA + R +G++Y S KECED+ LR RGLR + YHA L
Sbjct: 295 LAAFVDEVGRTATGVVYCLSQKECEDVSSGLRTRGLRAAPYHAGLPDESRSRVHDAWRRG 354
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFGLGIDKP+VR+V H SK++E++YQ
Sbjct: 355 SVAVVCATIAFGLGIDKPDVRYVAHFTCSKALESYYQ 391
>gi|357484579|ref|XP_003612577.1| ATP-dependent DNA helicase RecQ family protein expressed [Medicago
truncatula]
gi|355513912|gb|AES95535.1| ATP-dependent DNA helicase RecQ family protein expressed [Medicago
truncatula]
Length = 685
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 129/338 (38%), Positives = 185/338 (54%), Gaps = 49/338 (14%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
+ W + + + F ++ +R NQ IN L +D ++IM S ++ +VL++
Sbjct: 71 FEWDSQADDLRLNIFGISSYRANQKEIINAILSGRDVLVIMAAGGGKSLCYQLPAVLRNG 130
Query: 63 FNLTDFRPNQLAAINIALLKKDAIII---MPTGKLLK-KKKICLMT----ESSSLKLLYV 114
L P L+ I ++ A+ I M T K +K+ + + LKLLYV
Sbjct: 131 VALV-VSP-LLSLIQDQVMGLTALGIPAYMLTSTTSKDNEKVYIQSFWRRARGDLKLLYV 188
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PEK+ TK Q++Y+A HCCS WGHDFRPDY+ L ILKT FP+VP
Sbjct: 189 TPEKI-------TKKQEIYEA-----------HCCSQWGHDFRPDYKNLGILKTQFPNVP 230
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
++ LTATAT +V D+ +ML I CV + NRPNLFY V+ K + K +DE+A+ +
Sbjct: 231 MVALTATATQRVQNDLVEMLHIRRCVKFVSTVNRPNLFYMVKEKSSVSKVVVDEIAEFIQ 290
Query: 235 RRFRN-QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------- 276
+ N +SGI+Y S KECE + +ELR RG+ YHA ++ N
Sbjct: 291 ESYPNHESGIVYCFSRKECEQVAKELRERGISAGHYHADMDVNDREKVHMRWSNNKLQVI 350
Query: 277 -VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GI+KP+VRFVIHH LSKSME +YQ S G
Sbjct: 351 VGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAG 388
>gi|303271731|ref|XP_003055227.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463201|gb|EEH60479.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 581
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 132/360 (36%), Positives = 183/360 (50%), Gaps = 52/360 (14%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSDR 54
Y WS R+VL++ FN DFR QLA IN L K D +++MPT S
Sbjct: 53 YEWSSECRAVLRNTFNAQDFRGMQLATINCTLAKHDCLVLMPTGGGKSLCYQLPALISSG 112
Query: 55 VRSVLKSKFNLTDFRPNQLAAINI--ALLKKDAIIIMPTGKLLKKKKIC-LMTESSSLKL 111
V V+ +L + + L+ +NI A+L G+ + L + LKL
Sbjct: 113 VTVVISPLVSLIQDQLHHLSEMNIPAAVLGS----AENEGQAAQDATYSQLYSNPPGLKL 168
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LY++PEK+A+S M L+ ++ G LARI +DEVHC SSWGHDFR DY+ L ILK F
Sbjct: 169 LYLTPEKVARSPKLMRALETLHGRGMLARIVVDEVHCISSWGHDFRKDYKALRILKDRFR 228
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP++GLTATAT +V D + L +E C FNR N+ YEVR K K +DE+ D
Sbjct: 229 QVPVIGLTATATKRVQDDCVRQLGLERCARFFQTFNRTNIMYEVRKKG---KKTVDEIKD 285
Query: 232 LMSRRF-----RNQSGIIYTTSIKECEDLREELRN---------RGLRVSAYHAKLESN- 276
+++ +F R GI+Y S +C + L +GL YHA +
Sbjct: 286 IIAEKFTQRNGRVACGIVYCFSQNDCVKVAAALHTKPRADKRFPKGLAAVPYHAGMGEER 345
Query: 277 ----------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GI+KP+VRFV HH + KS+E ++Q S G G SF
Sbjct: 346 EYNQRQWSNGQVSIICATVAFGMGINKPDVRFVFHHSIPKSLEAYHQESGRAGRDGAKSF 405
>gi|358367182|dbj|GAA83801.1| RecQ family helicase MusN [Aspergillus kawachii IFO 4308]
Length = 1549
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 126/347 (36%), Positives = 174/347 (50%), Gaps = 78/347 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDA----------------------- 85
+PWS VR+ LK +F+L FR NQL AI+ L KD
Sbjct: 697 HPWSKDVRNALKDRFHLRGFRLNQLEAIDATLSGKDTFVLMPTGGGKSLCYQLPSVVTSG 756
Query: 86 ------IIIMP----------------------TGKLLKKKKICLMTESSS------LKL 111
I+I P G+ K+++ +++ S ++L
Sbjct: 757 STRGVTIVISPLLSLMQDQVSHLNKLNIKAYLLNGETPKEQRQWILSTLSGFSAEEDIEL 816
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LY++PE + KS++ L K+ + LARI IDE HC S WGHDFRPDY+ L L+ P
Sbjct: 817 LYITPEMVNKSQAITKSLDKLNCSRKLARIVIDEAHCVSQWGHDFRPDYKELGELRNQLP 876
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP++ LTATAT V +DV L++E C V FNRPNL YEVRIK + L +AD
Sbjct: 877 GVPMMALTATATENVKVDVIHNLKMEGCEVFSQSFNRPNLTYEVRIKKKG-TEVLASIAD 935
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN-------------- 276
+ + N+SGI+Y S K CE + LR+ ++ YHA ++S
Sbjct: 936 TIKTSYANKSGIVYCLSRKTCEKVASGLRDDYRIKAEHYHAGMDSGERAKIQQAWQAGRT 995
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G GK S
Sbjct: 996 HVIVATIAFGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAGRDGKRS 1042
>gi|453080950|gb|EMF09000.1| ATP-dependent DNA helicase [Mycosphaerella populorum SO2202]
Length = 1518
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 125/350 (35%), Positives = 176/350 (50%), Gaps = 46/350 (13%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS-----------D 53
+PWS V L F + FR NQ AIN L KD ++MPT S
Sbjct: 604 FPWSQEVADRLTKVFKMKGFRENQFQAINATLSGKDVFVLMPTGGGKSLTYQLPALIQTG 663
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE------SS 107
+ R V L +Q+ ++ L A +I G+ + K +M
Sbjct: 664 KTRGVTVVVSPLLSLMQDQVQ--HLKQLGIQAFLI--NGETTPEDKRRVMDALWKPNVEQ 719
Query: 108 SLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
++LLYV+PE L KS++ + + +++ G AR+ IDE HC S WGHDFRPDY+ L ++
Sbjct: 720 FVQLLYVTPEMLGKSENMLRAFEGLHRRGKFARLVIDEAHCVSQWGHDFRPDYKNLGEIR 779
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIE-----DCVVIKAPFNRPNLFYEVRIKPAAQ 222
FP VP++ LTATATT+V D L +E C V FNR NL+YEVR KP
Sbjct: 780 QRFPGVPLMALTATATTRVREDTMHNLGMEKNNPDKCQVFTQSFNRENLYYEVRPKPKG- 838
Query: 223 KDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREEL-RNRGLRVSAYHAKLESN----- 276
K+ + +AD++ ++GIIY S CED+ + L + +R YHA L+ +
Sbjct: 839 KEGISAMADIIKDSHPRETGIIYCLSRANCEDIAKALQKTHKIRAQHYHAGLKGSEKSMV 898
Query: 277 -------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDK NVRFVIHH + KS+E +YQ + G
Sbjct: 899 QEEWQAGRIKVIVATIAFGMGIDKSNVRFVIHHTIPKSLEGYYQETGRAG 948
>gi|12323338|gb|AAG51646.1|AC018908_12 putative DNA helicase; 33057-26178 [Arabidopsis thaliana]
Length = 1031
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 172/333 (51%), Gaps = 50/333 (15%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD-----------AIIIMPTDYPWS 52
++PW+ + K F FRPNQ IN + D ++I P
Sbjct: 401 DFPWTKNLEVYNKLVFGNHSFRPNQREIINATMSGCDVFLPALLCAGITLVISPLVSLIQ 460
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLL 112
D++ ++L++ + A + +L++ L +E S KLL
Sbjct: 461 DQIMNLLQTNISAASLSAGMEWAEQLEILQE------------------LSSEKSKYKLL 502
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
YV+PEK+AKS+S + L+ + LAR IDE HC S WGHDFRPDYQ L +LK FP+
Sbjct: 503 YVTPEKVAKSESLLRHLEILNSRSLLARFVIDEAHCVSQWGHDFRPDYQGLGVLKQKFPN 562
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
+P+L LTATATT V DV + L + +CVV + FNRPNL+Y V P K CL+++
Sbjct: 563 IPMLALTATATTSVKEDVVQALGLVNCVVFRQSFNRPNLWYSV--VPKTNK-CLEDIDKF 619
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
+ ++ GIIY S +CE + E LR G + + YH ++
Sbjct: 620 IRENHFDECGIIYCLSRMDCEKVTEALRVFGHKAAFYHGSMDPGKRAFVQKQWSKDEINI 679
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KP+VRFVIHH L KS+E ++Q
Sbjct: 680 ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 712
>gi|298705316|emb|CBJ49006.1| DNA helicase recq1, putative [Ectocarpus siliculosus]
Length = 678
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 157/306 (51%), Gaps = 52/306 (16%)
Query: 57 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLM------------- 103
+L+ F L+ +R NQ +N L +DA ++M TG K +C
Sbjct: 3 GLLRGTFGLSSWRTNQKEIVNATLSGRDAFVVMRTGG---GKSLCYQLPALLKGGITVGG 59
Query: 104 ----------------TESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVH 147
S+ L ++ V+PEK+ KSK FM L K K G LARI IDE H
Sbjct: 60 GGGGGGGGDGKGKGKGKGSTGLVMVLVTPEKVVKSKMFMAALDKTAKNGRLARIVIDEAH 119
Query: 148 CCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQI--EDCVVIKAP 205
CCS WGHDFRP+Y L ILK F VP+L +TAT T + DV K+L + D V K+
Sbjct: 120 CCSQWGHDFRPEYCKLGILKRQFAHVPVLAVTATCTDFIRDDVLKILNLAPADVVCFKSS 179
Query: 206 FNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLR 265
FNR NL YEV KP A K+ L+ LA L+ +R Q+GI+Y S KE D+ L RG+
Sbjct: 180 FNRANLRYEVVEKPEAAKESLELLASLIKDSYRGQAGIVYAFSRKEASDVAAGLGARGVP 239
Query: 266 VSAYHAKLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+ YHA E +IAFG+GI+ VRFV+H LSKS+EN+YQ
Sbjct: 240 AAFYHAGQEERERSRVQQAWMRGDVPVIVATIAFGMGINHLEVRFVVHFSLSKSLENYYQ 299
Query: 308 VSIAFG 313
S G
Sbjct: 300 ESGRAG 305
>gi|157104176|ref|XP_001648286.1| blooms syndrome DNA helicase [Aedes aegypti]
gi|108880401|gb|EAT44626.1| AAEL004039-PA [Aedes aegypti]
Length = 1406
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/336 (35%), Positives = 169/336 (50%), Gaps = 72/336 (21%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLLKKKKICLMTE 105
+YP S + + ++KF L FRPNQL IN LL D ++MPT GK L + L+T
Sbjct: 654 NYPHSQEMAELFRTKFGLQSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPALLTN 713
Query: 106 SSS-------------------------------------------------LKLLYVSP 116
+ +KLLYV+P
Sbjct: 714 GVTIVVSPLKSLILDQVNKLSSLDIEAAHLSGNISYAEEQRIYYDLQSPRPKMKLLYVTP 773
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK++ S F L ++ LAR IDE HC S+WGHDFRPDY+ LS+L+ FP +PI+
Sbjct: 774 EKISSSGRFQNVLSGLHAMKQLARFVIDEAHCVSAWGHDFRPDYKKLSVLREQFPSIPIM 833
Query: 177 GLTATATTKVMLDVQKMLQIE-DCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
LTATA +V +DV K L+++ D FNRPNL Y VR K E+ DL+ +
Sbjct: 834 ALTATANPRVRVDVIKQLRLKSDTKWFLCSFNRPNLKYIVRPKQGVA--TKQEIIDLIKK 891
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
++ SGI+Y + K+C+ L E+++ G+ +YHA L +
Sbjct: 892 KYPRASGIVYCLAKKDCDQLAAEMKSAGISAKSYHAGLSDSQRESTQKDWIADKTKVVCA 951
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VR+VIHH + KS+E +YQ + G
Sbjct: 952 TIAFGMGIDKPDVRYVIHHSIPKSIEGYYQEAGRAG 987
>gi|344231853|gb|EGV63732.1| ATP-dependent DNA helicase [Candida tenuis ATCC 10573]
Length = 1031
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/347 (34%), Positives = 184/347 (53%), Gaps = 42/347 (12%)
Query: 6 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS------------- 52
P+ + SVL KF L +FR NQ AI L +D ++MPT S
Sbjct: 338 PYIKEIYSVLNKKFKLQNFRSNQFEAIISLLQGRDVFVLMPTGGGKSLCYQLPSLIKIGA 397
Query: 53 --DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLK 110
V V+ +L + L NI A +I + +KK+I + +++ L
Sbjct: 398 RNQGVTIVISPLISLMQDQVQHLKNKNIK-----AGMINSKIEYSEKKQIIDLFKTAQLD 452
Query: 111 LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170
L+Y+SPE + S ++++Y L ++ +DE HC SSWGHDFRPDY+ +SI + +
Sbjct: 453 LVYLSPEMVNSSAQIQRIIKQLYDTKQLNKVIVDEAHCISSWGHDFRPDYKAMSIFRQNY 512
Query: 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA 230
PD+PI+ LTATA KV LD+ +L ++ V K FNR NL+YE+R+K A ++++
Sbjct: 513 PDIPIMALTATANDKVRLDILHLLNMKSPKVFKQSFNRINLYYEIRMKKAG---FVEDIR 569
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN-------------- 276
D + +++NQ+GIIY S + CE + +L G+ + YHA + +
Sbjct: 570 DTILAKYKNQTGIIYCHSKQSCEQISMKLNQFGIESAFYHAGMSTEDRFEVQDSWQQERL 629
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKPNVRFVIH L +++E +YQ + G G HS
Sbjct: 630 RVICATIAFGMGIDKPNVRFVIHSFLPRNLEGYYQETGRAGRDGLHS 676
>gi|448111284|ref|XP_004201806.1| Piso0_002008 [Millerozyma farinosa CBS 7064]
gi|359464795|emb|CCE88500.1| Piso0_002008 [Millerozyma farinosa CBS 7064]
Length = 1430
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 123/336 (36%), Positives = 177/336 (52%), Gaps = 38/336 (11%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP-----------WSDRVRS 57
D V L F+L FRPNQL AI L +D ++MPT S + R
Sbjct: 735 DDVYQCLNRLFHLKSFRPNQLEAIVSTLNGRDVFVLMPTGGGKSLCYQLPALISSGKTRG 794
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKD--AIIIMPTGKLLKKKKICLMTESSSLKLLYVS 115
L +Q+ LL K+ A +I G ++K + L+L+Y+S
Sbjct: 795 TTIVISPLISLMQDQVQH----LLHKNIRAGMISSKGSAAERKSTLEQFRNGELQLVYLS 850
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE + S+ + ++Y++ LAR+ +DE HC SSWGHDFRPDY+ +S+ K FP VP+
Sbjct: 851 PEMVNTSQHIQRIIARLYESRQLARVVVDEAHCVSSWGHDFRPDYKGMSLFKQQFPQVPV 910
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATA KV +D+ LQ+ D V++K FNR NLFYE++ K A + LD + D +
Sbjct: 911 MALTATANEKVRMDIVHHLQMSDPVLLKQSFNRTNLFYEIKWKAA---NFLDWIRDYILT 967
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
+ +N++GIIY S + CE + L G+R S YHA L
Sbjct: 968 KQQNKTGIIYCHSKQSCEVTSDRLNQWGVRCSYYHAGLSPTERFQIQTDWQQNRIQVICA 1027
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH + +S+E +YQ + G
Sbjct: 1028 TIAFGMGIDKPDVRFVIHLFIPRSLEGYYQETGRAG 1063
>gi|224070434|ref|XP_002303149.1| predicted protein [Populus trichocarpa]
gi|222840581|gb|EEE78128.1| predicted protein [Populus trichocarpa]
Length = 1194
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/334 (35%), Positives = 175/334 (52%), Gaps = 38/334 (11%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
N+PW+ ++ + K F FRPNQ IN + D ++MPT S
Sbjct: 439 NFPWTKKLEANNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALVCP 498
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC--LMTESSSLKL 111
+ V+ +L + L NI A + + ++++I L ++ +L
Sbjct: 499 GITLVISPLVSLIQDQIMHLLQANIP-----AAYLSANMEWTEQQEILRELCSDYCKYRL 553
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEK+AKS + L+ + G LARI IDE HC S WGHDFRPDY+ L ILK F
Sbjct: 554 LYVTPEKVAKSDVLLRNLESLNGRGLLARIVIDEAHCVSQWGHDFRPDYKELGILKKKFE 613
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
P+L LTATAT V DV + L + DC+V + FNRPNL+Y V K K CL+++
Sbjct: 614 KTPVLALTATATASVKEDVVQALGLVDCIVFRQSFNRPNLWYSVIPKT---KKCLEDIDK 670
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--------------- 276
+ ++ GIIY S +CE + E+L+ G + + YH +++
Sbjct: 671 FIKENHFDECGIIYCLSRMDCEKVAEKLQECGHKTAFYHGNMDAAQRSFVQKQWSKDEIN 730
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KP+VRFVIHH L KS+E ++Q
Sbjct: 731 IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 764
>gi|388853955|emb|CCF52453.1| related to SGS1-DNA helicase [Ustilago hordei]
Length = 1290
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/355 (34%), Positives = 177/355 (49%), Gaps = 74/355 (20%)
Query: 37 LKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKL 94
L K A + MPT YPW+ V L+ +F L FR +QL AIN L +D ++MPT GK
Sbjct: 392 LTKKARLQMPT-YPWTRSVWYELRHRFKLKLFRAHQLEAINHILNARDVFVLMPTGGGKS 450
Query: 95 L---------------------------------------------------KKKKICLM 103
L K K+C
Sbjct: 451 LCYQLPACVMQGKTDGLTVVVSPLLSLIQDQVRHLISLRIPATKLTGDMSSADKNKVCQA 510
Query: 104 TESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL 163
+ +++LLY++PE + +S T +Y+ +AR +DE HC S WGHDFRP Y L
Sbjct: 511 AIAGNIRLLYLTPEYIRQSGQAKTLFNDLYRQKKIARFIVDEAHCVSQWGHDFRPHYTEL 570
Query: 164 SILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK 223
L+ +PDVPI+ LTATA +V+ DV++ L++++ I FNRPNL Y+VR KP
Sbjct: 571 GELRLSYPDVPIMALTATANARVIKDVKECLRMKNVEHISQSFNRPNLEYQVRKKPKTNV 630
Query: 224 DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN------ 276
++E++ L+ + Q GIIY S + CE + +L + G+ YHAKL ++
Sbjct: 631 KAMEEISSLILTSHKGQCGIIYCFSRESCETVAHDLSTQYGISAHHYHAKLSADDRAMVQ 690
Query: 277 ------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G GK S
Sbjct: 691 QRWQKNEFQVIVATIAFGMGIDKPDVRFVIHHSVPKSLEGYYQETGRAGRDGKQS 745
>gi|355778305|gb|EHH63341.1| Bloom syndrome protein [Macaca fascicularis]
Length = 1338
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 122/319 (38%), Positives = 170/319 (53%), Gaps = 34/319 (10%)
Query: 20 NLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIA 79
N TD LA+ N+ + ++ +P + + + KF L +FR NQL AIN A
Sbjct: 651 NYTDKSAQNLASRNLKHERFQSL-----SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAA 705
Query: 80 LLKKDAIIIMPTGKLLKKKKICLMTESSS----LKLLYVSPEKLAKSKSFMTKLQKMYKA 135
LL +D I+MPTG + + + S +KLLYV+PEK+ S ++ L+ +Y+
Sbjct: 706 LLGEDCFILMPTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYER 765
Query: 136 GCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQ 195
LAR IDE HC S WGHDFR DY+ +++L+ FP VP++ LTATA +V D+ L+
Sbjct: 766 KLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLK 825
Query: 196 IEDCVVIKAPFNRPNLFYEVRIKPAAQK--DCLDELADLMSRRFRNQSGIIYTTSIKECE 253
I V FNR NL Y V K + DCL + + + + SGIIY S +EC+
Sbjct: 826 ILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL----EWIRKHYPYDSGIIYCLSRRECD 881
Query: 254 DLREELRNRGLRVSAYHAKLESN-------------------VSIAFGLGIDKPNVRFVI 294
+ + L+ GL AYHA L + +IAFG+GIDKP+VRFVI
Sbjct: 882 TMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRFVI 941
Query: 295 HHCLSKSMENFYQVSIAFG 313
H L KSME +YQ S G
Sbjct: 942 HASLPKSMEGYYQESGRAG 960
>gi|448097267|ref|XP_004198627.1| Piso0_002008 [Millerozyma farinosa CBS 7064]
gi|359380049|emb|CCE82290.1| Piso0_002008 [Millerozyma farinosa CBS 7064]
Length = 1415
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 123/336 (36%), Positives = 176/336 (52%), Gaps = 38/336 (11%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP-----------WSDRVRS 57
D V L F L FRPNQL AI L +D ++MPT S + R
Sbjct: 726 DDVYQCLNRTFYLKSFRPNQLEAIVSTLNGRDVFVLMPTGGGKSLCYQLPALISSGKTRG 785
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKD--AIIIMPTGKLLKKKKICLMTESSSLKLLYVS 115
L +Q+ LL K+ A +I G ++K + L+L+Y+S
Sbjct: 786 TTIVISPLISLMQDQVQH----LLHKNIRAGMISSKGSAAERKSTLEQFRNGELQLVYLS 841
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE + S+ + ++Y++ LAR+ +DE HC SSWGHDFRPDY+ +S+ K FP VP+
Sbjct: 842 PEMVNTSQHIQRIIARLYESRQLARVVVDEAHCVSSWGHDFRPDYKGMSLFKQQFPQVPV 901
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATA KV +D+ LQ+ D V++K FNR NLFYE++ K A + LD + D +
Sbjct: 902 IALTATANEKVRMDIVHHLQMSDPVLLKQSFNRTNLFYEIKWKAA---NFLDWIRDYILT 958
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
+ +N++GIIY S + CE + L G+R S YHA L
Sbjct: 959 KQQNKTGIIYCHSKQSCEVTADRLNQWGVRCSYYHAGLSPTERFQIQTDWQQNRIQVICA 1018
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH + +S+E +YQ + G
Sbjct: 1019 TIAFGMGIDKPDVRFVIHLFIPRSLEGYYQETGRAG 1054
>gi|281206277|gb|EFA80466.1| ATP-dependent DNA helicase RecQ family protein [Polysphondylium
pallidum PN500]
Length = 842
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 126/338 (37%), Positives = 182/338 (53%), Gaps = 33/338 (9%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
+PW V + F RP Q AIN L ++D + +PT S ++ +++ S
Sbjct: 375 FPWDRFVEGCNRLVFGNERLRPLQSDAINSVLYRRDTFVSLPTGGGKSLCFQLPAIIDSG 434
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKL------LKKKKIC---LMTESSSLKLLY 113
L P L A+ L K + +PT L +KKKI L KLLY
Sbjct: 435 VTLV-ISP--LLALMFDQLSKLLQLGVPTCALNSSVPVSEKKKIIKELLDPAGCPYKLLY 491
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
V+PE++ K++ F+ L+ + L R+ IDE HC S WGHDFR DY+ LS + MFP++
Sbjct: 492 VTPERM-KTQEFIDILEHLNNTSQLKRLVIDEAHCISEWGHDFRKDYRKLSKFREMFPNI 550
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
PI+ LTATAT KV LD+++ L + + + I+ F R NL YEVR K + C +++ +
Sbjct: 551 PIVALTATATPKVELDIKQQLSMHNTINIRGSFIRSNLKYEVRKKSTEPEFCFNDIYHFV 610
Query: 234 SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------- 276
+R +N SGI+Y ++I ECE L E L +RGL V YHA L +
Sbjct: 611 NRNHKNSSGIVYCSTIAECESLCEYLTDRGLSVDFYHASLNAAQRVDTQERWITGKFKIV 670
Query: 277 -VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+ RFVIHH + S+E++YQ + G
Sbjct: 671 CTTIAFGMGIDKPDTRFVIHHSIPSSIESYYQQTGRAG 708
>gi|365987708|ref|XP_003670685.1| hypothetical protein NDAI_0F01230 [Naumovozyma dairenensis CBS 421]
gi|343769456|emb|CCD25442.1| hypothetical protein NDAI_0F01230 [Naumovozyma dairenensis CBS 421]
Length = 1110
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 121/360 (33%), Positives = 178/360 (49%), Gaps = 75/360 (20%)
Query: 32 INIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT 91
+ +++ + + +Y W++ V L+ F L FRPNQL AIN L+ KD ++MPT
Sbjct: 439 VGLSIAETRTANVNEEEYRWTEEVYYRLRHTFKLPGFRPNQLEAINSTLIGKDVFVLMPT 498
Query: 92 GK----------LLKKKK-----------ICLMTES------------------------ 106
G ++K K I LM +
Sbjct: 499 GGGKSLCYQLPAIVKSGKTKGTSIVISPLISLMQDQVEHLLDLNIKASMISSKGTTQQRK 558
Query: 107 --------SSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRP 158
L L+Y+SPE +A SK ++K+Y+ G LARI +DE HC SSWGHDFRP
Sbjct: 559 QTFSLFSQGKLDLIYISPEMIASSKQCKRVIKKLYQEGNLARIIVDEAHCVSSWGHDFRP 618
Query: 159 DYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIK 218
DY+ L K+ +P +P++ LTATA V D+ L++ + V +K FNR NLFYEV K
Sbjct: 619 DYKELYFFKSEYPKIPMMVLTATANEHVRQDIVTNLRLRNPVFLKQSFNRTNLFYEVLRK 678
Query: 219 PAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN-- 276
KD +DE+ D + F QSGIIY S CE + +L+N +R YHA ++ +
Sbjct: 679 ---DKDSIDEMIDAIKYHFTEQSGIIYCHSKNSCEKVALQLQNNQIRCGYYHAGMDPDER 735
Query: 277 ----------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GIDK +VRF+ H + +++E +YQ + G GK S+
Sbjct: 736 MMIQRDWQRNKLQVICATVAFGMGIDKSDVRFIYHFTVPRTLEGYYQETGRAGRDGKPSY 795
>gi|302772997|ref|XP_002969916.1| hypothetical protein SELMODRAFT_10140 [Selaginella moellendorffii]
gi|300162427|gb|EFJ29040.1| hypothetical protein SELMODRAFT_10140 [Selaginella moellendorffii]
Length = 703
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 121/336 (36%), Positives = 174/336 (51%), Gaps = 72/336 (21%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLLKKK--KIC- 101
+D+PWS +++ + F FRPNQ IN + D ++MPT GK L + IC
Sbjct: 16 SDFPWSMDLKANNRRYFGNKSFRPNQHEIINATMSGHDVFVLMPTGGGKSLTYQLPAICC 75
Query: 102 -------------LMTE--------------SSSL-------------------KLLYVS 115
+M + SS+L +LLYV+
Sbjct: 76 PGVTLVVCPLVSLIMDQIMHLSQASIRAEHLSSNLEYEEQRQILQQLNFDHCEYRLLYVT 135
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PEK+A+S + + L+ +++ LARI IDE HC S WGHDFRPDYQ L ILK FPDVP+
Sbjct: 136 PEKIARSDNLLRNLENLHRRRLLARIVIDEAHCVSQWGHDFRPDYQNLGILKQKFPDVPL 195
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATAT +V DV + L + C++ + FNRPNL Y V K K +E+ +
Sbjct: 196 MALTATATMRVKEDVVQALGLCKCIIFRQTFNRPNLRYSVVPKT---KKVYEEIDAFIKE 252
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
+ ++SGIIY S +CE + E+LR G ++ YHA ++
Sbjct: 253 NYPHESGIIYCFSKMDCERVCEQLRKTGHKIGFYHASMDPQERNRVQRMWSKDEINIICA 312
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GI+KP+VRFVIHH + KS+E ++Q S G
Sbjct: 313 TVAFGMGINKPDVRFVIHHSIPKSIEGYHQESGRAG 348
>gi|242066738|ref|XP_002454658.1| hypothetical protein SORBIDRAFT_04g035010 [Sorghum bicolor]
gi|241934489|gb|EES07634.1| hypothetical protein SORBIDRAFT_04g035010 [Sorghum bicolor]
Length = 714
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 129/323 (39%), Positives = 166/323 (51%), Gaps = 62/323 (19%)
Query: 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----------------LLKKK 98
+ SVL F + FR QL AI L +D +MPTG LK K
Sbjct: 21 LESVLNQYFGYSGFRGKQLEAIEAVLSGRDCFCLMPTGGGKSMCYQVPALENQVASLKNK 80
Query: 99 KIC-------------------LMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLA 139
I L T + SLKLLYV+PE +A S FM KL+K+Y G L
Sbjct: 81 GIPAEFLSSTQASHTKQRIHEDLDTGNPSLKLLYVTPELVATS-GFMAKLKKLYNRGLLG 139
Query: 140 RIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDC 199
+AIDE HC S+WGHDFRP Y+ LS L+ FPD+P+L LTATA KV DV L +++
Sbjct: 140 LVAIDEAHCISTWGHDFRPSYRKLSSLRKQFPDIPLLALTATAVPKVQKDVISSLCLQNP 199
Query: 200 VVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFR---NQSGIIYTTSIKECEDLR 256
V+++A FNRPN+FYEVR KD LD++ +S + N IIY C+DL
Sbjct: 200 VILRASFNRPNIFYEVRY-----KDLLDDVYSDISNLLKSSGNACSIIYCLERAACDDLS 254
Query: 257 EELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCL 298
L +G+ +AYHA L S V ++AFG+GID+ +VR V H L
Sbjct: 255 MHLSQQGVSSAAYHAGLNSKVRSSVLDDWLSSRTQVVVATVAFGMGIDRQDVRIVCHFNL 314
Query: 299 SKSMENFYQVSIAFGLGKHSFRS 321
KSME+FYQ S G + RS
Sbjct: 315 PKSMESFYQESGRAGRDQRPSRS 337
>gi|255719436|ref|XP_002555998.1| KLTH0H02706p [Lachancea thermotolerans]
gi|238941964|emb|CAR30136.1| KLTH0H02706p [Lachancea thermotolerans CBS 6340]
Length = 1403
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 117/343 (34%), Positives = 171/343 (49%), Gaps = 75/343 (21%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--------------- 93
+ W+ V L + F L FRPNQL AIN +L KD ++MPTG
Sbjct: 618 FEWTAEVYHRLHNVFKLPGFRPNQLEAINASLEGKDVFVLMPTGGGKSLCYQLPAVVRSG 677
Query: 94 -----------------------LLKKKKICLMTESSS---------------LKLLYVS 115
L K K C+ + + L L+Y+S
Sbjct: 678 KTSGTTVVISPLISLMQDQVEHLLAKNIKACMFSSKGTADQKRQTFNLFINGLLDLIYIS 737
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE ++ S+ + K+Y+ LARI +DE HC S+WGHDFRPDY+ L K +PD+P+
Sbjct: 738 PEMISASEQCKKAIGKLYRDKKLARIVVDEAHCVSNWGHDFRPDYKELKYFKREYPDIPM 797
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATA+ +V LD+ LQ+ + V +K FNR NL+YEV K K+ + ++ + +
Sbjct: 798 IALTATASEQVRLDIVHNLQLNNPVFLKQSFNRTNLYYEVLKK---SKNVVFDICNAVKT 854
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
RF+NQ+GIIY S CE L+ G+ + YHA +E +
Sbjct: 855 RFKNQTGIIYCHSKNSCEQTASLLQRNGINSAYYHAGMEPDERLEVQQAWQANRIRIICA 914
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GIDKP+VRFV H + +++E +YQ + G GK SF
Sbjct: 915 TVAFGMGIDKPDVRFVYHLTIPRTLEGYYQETGRAGRDGKFSF 957
>gi|343429696|emb|CBQ73268.1| related to SGS1-DNA helicase [Sporisorium reilianum SRZ2]
Length = 1258
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 124/356 (34%), Positives = 176/356 (49%), Gaps = 77/356 (21%)
Query: 37 LKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---K 93
L KD I MP Y W+ V L+ F L FR NQL AIN L+ +D ++MPTG
Sbjct: 321 LSKDDIRRMPQ-YDWTRDVVYALRRYFKLRRFRHNQLEAINGTLMGRDVFVLMPTGGGKS 379
Query: 94 LLKKKKICLMTES----------------------------------------------- 106
L + C+ TE+
Sbjct: 380 LCYQLPACIDTENAKGLTIVISPLISLINDQVRHLTLKEIAAASITGDTNPADKRLVMDL 439
Query: 107 -----SSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQ 161
SSL+LLY++PE + S L ++Y LAR +DE HC S WGHDFRP Y
Sbjct: 440 ARETKSSLRLLYLTPEFIRTSPQAQLLLDELYSRKQLARFVVDEAHCVSQWGHDFRPHYT 499
Query: 162 YLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAA 221
L L+ +P VPI+ LTATA +V+ DV+ LQ+++ + + + FNRPNL Y+VR KP +
Sbjct: 500 ELGALRKQYPTVPIMALTATANARVVKDVEACLQMKNVLQLSSSFNRPNLEYQVRSKPRS 559
Query: 222 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----- 276
+ +D++A + +++ GI+Y S + CE + +L G+ YHA+L+ +
Sbjct: 560 K--AVDDIASFILASHKDECGIVYCLSRETCETVAADLIKHGISAHHYHARLQKDDRAMV 617
Query: 277 -------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH L KS+E +YQ + G GK S
Sbjct: 618 QDKWQSNEFKVIVATIAFGMGIDKPDVRFVIHHSLPKSLEGYYQETGRAGRDGKSS 673
>gi|390357198|ref|XP_781064.3| PREDICTED: uncharacterized protein LOC575579 [Strongylocentrotus
purpuratus]
Length = 1391
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 123/348 (35%), Positives = 184/348 (52%), Gaps = 65/348 (18%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKF 63
N+P S + V + F L FR NQL AIN ALL +D I+MPT S
Sbjct: 762 NFPHSRELHKVFRKTFGLHQFRENQLEAINAALLGEDCFILMPTGGGKS----------- 810
Query: 64 NLTDFRPNQLAAINIALLKKDAIIIMPTGKLLK---KKKICLMTESSSL----------- 109
LT QL + L K I+I P L++ ++ + L + + L
Sbjct: 811 -LT----YQLPGV---LTKGVTIVISPLKSLIQDQVQRLVSLEIQETHLSGEMAGAAADG 862
Query: 110 ------------KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFR 157
K+LYV+PEK++ S+ ++ ++ +Y G L+R IDE HC S WGHDFR
Sbjct: 863 IYRQLCMRDPVVKMLYVTPEKISASQKLLSTMEHLYTRGLLSRFVIDEAHCVSQWGHDFR 922
Query: 158 PDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRI 217
PDY+ L L+ FP VP++ LTATAT +V D+ L+++ V+ + F+R NL + V
Sbjct: 923 PDYKRLCKLREKFPGVPMMALTATATPRVKTDILHALKMKKPQVLTSSFDRSNLMFRVEK 982
Query: 218 KPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA----KL 273
K ++ ++ + L++ +F+ +SGI+Y S ECE + ++L N G++ S YHA K
Sbjct: 983 KQPSK--MIENITKLINSQFKGKSGIVYCLSRNECEKVADDLSNAGIKASPYHAGQSDKE 1040
Query: 274 ESNV--------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
S V +IAFG+GIDK +VRFVIH+ + KS+E +YQ
Sbjct: 1041 RSTVQTRWINGQYKVVCATIAFGMGIDKADVRFVIHYSMPKSIEGYYQ 1088
>gi|330795187|ref|XP_003285656.1| hypothetical protein DICPUDRAFT_5670 [Dictyostelium purpureum]
gi|325084382|gb|EGC37811.1| hypothetical protein DICPUDRAFT_5670 [Dictyostelium purpureum]
Length = 529
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 174/327 (53%), Gaps = 35/327 (10%)
Query: 16 KSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSDRVRSVLKSKFNL 65
K F FR NQ IN L KD ++MPT + V V+ +L
Sbjct: 2 KKTFGFNQFRENQREIINSVLDSKDTFVLMPTGGGKSLCYQIPGLYQQGVTIVVSPLISL 61
Query: 66 TDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSF 125
+ + L A++ A+ T KK L + S +LLYV+PE++A +++F
Sbjct: 62 IEDQVKFLLALDYPAA---ALCSGITSDDAKKVFRDLRSNSPKTRLLYVTPERVASNETF 118
Query: 126 MTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTK 185
M L +Y+ G RI IDE HC S WGHDFRPDY+ LSIL+ FP VPIL LTATAT K
Sbjct: 119 MDILGDLYQKGKFMRIVIDEAHCVSQWGHDFRPDYKELSILRKNFPSVPILALTATATEK 178
Query: 186 VMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIY 245
V D+ L ++ V K FNRPNL+Y V KP KD ++A+ + +++ ++SGIIY
Sbjct: 179 VRNDIILNLNMKKPVCFKQSFNRPNLYYHVMKKP---KDVSKQMAEFIKKQYPDKSGIIY 235
Query: 246 TTSIKECEDLREELRNR-GLRVSAYHAKLESN------------------VSIAFGLGID 286
S +CE + +L G++ + YHA +E + +IAFG+GI+
Sbjct: 236 CLSKYDCEKISGDLNTEYGIKSAYYHAGMEIHSRNQVQDRWQKGRIKVIVATIAFGMGIN 295
Query: 287 KPNVRFVIHHCLSKSMENFYQVSIAFG 313
KP+VRFV HH + KS+E +YQ S G
Sbjct: 296 KPDVRFVFHHSIPKSLEGYYQESGRAG 322
>gi|449457093|ref|XP_004146283.1| PREDICTED: ATP-dependent DNA helicase Q-like 4A-like, partial
[Cucumis sativus]
gi|449511185|ref|XP_004163888.1| PREDICTED: ATP-dependent DNA helicase Q-like 4A-like, partial
[Cucumis sativus]
Length = 1269
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 121/334 (36%), Positives = 176/334 (52%), Gaps = 38/334 (11%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
N+ W+ + + K F FRPNQ IN + D ++MPT S
Sbjct: 498 NFSWTKELEANNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALICP 557
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC--LMTESSSLKL 111
V V+ +L + L NI+ A + + ++++I L ++ S KL
Sbjct: 558 GVTLVISPLVSLIQDQIMHLIQANIS-----AAYLSANMEWSEQQEIFRDLSSDCSKYKL 612
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEK+AKS + L+ + LARI IDE HC S WGHDFRPDYQ L ILK FP
Sbjct: 613 LYVTPEKVAKSDVLLRHLESLNARHLLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFP 672
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
+P+L LTATAT V DV + L + +C++ + FNRPNL+Y V K K C+D++
Sbjct: 673 KIPVLALTATATASVKEDVVQALGLINCIIFRQSFNRPNLWYSVIPK---TKKCVDDIDK 729
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL---------------ESN 276
+ ++ GI+Y S +CE + E L+ G + + YH + E N
Sbjct: 730 FIKENHFDECGIVYCLSRMDCEKVAERLQECGHKAAFYHGSMDPAQRSFIQKQWSKDEIN 789
Query: 277 V---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+ ++AFG+GI+KP+VRFVIHH L KS+E ++Q
Sbjct: 790 IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 823
>gi|326514896|dbj|BAJ99809.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 763
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 134/339 (39%), Positives = 180/339 (53%), Gaps = 34/339 (10%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDF 68
+ SVLK F ++FR QL AI L +D +MPT S ++ +++K+ L
Sbjct: 24 LESVLKQYFGYSEFRGRQLEAIEAVLSGRDCFCLMPTGGGKSMCYQIPALVKTGVVLVIS 83
Query: 69 RPNQLAAINIALLKKDAI---IIMPTGKLLKKKKICLMTESS--SLKLLYVSPEKLAKSK 123
L ++ LK I + T K KI +S SLKLLYV+PE +A S
Sbjct: 84 PLIALMENQVSSLKSKGIPAEFLSSTQTTANKNKIHEDLDSGRPSLKLLYVTPELVATS- 142
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
F KL K++ G L +AIDE HC S+WGHDFRP Y+ +S L+ FPD+PIL LTATA
Sbjct: 143 GFKAKLTKLHNRGLLGLVAIDEAHCISTWGHDFRPSYRKISSLRKQFPDIPILALTATAV 202
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFR---NQ 240
KV DV L +++ V++KA FNRPN+FYEVR KD LD++ +S + N
Sbjct: 203 PKVQKDVISSLSLQNPVILKASFNRPNIFYEVRY-----KDLLDDVFSDISNLLKSSGNV 257
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282
IIY C+DL L +G+ +AYHA L S V ++AFG
Sbjct: 258 CSIIYCLERAACDDLTMHLSQQGISSAAYHAGLNSKVRTTVLDDWLSSRTQVVVATVAFG 317
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRS 321
+GID+ +VR V H L KSME+FYQ S G + RS
Sbjct: 318 MGIDRHDVRIVCHFNLPKSMESFYQESGRAGRDQQPSRS 356
>gi|255083412|ref|XP_002504692.1| predicted protein [Micromonas sp. RCC299]
gi|226519960|gb|ACO65950.1| predicted protein [Micromonas sp. RCC299]
Length = 531
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 126/349 (36%), Positives = 178/349 (51%), Gaps = 49/349 (14%)
Query: 11 VRSVLKSKFNLT-DFRPNQLAAINIALLKKDAIIIMPT--------------DYPWSDRV 55
V S+L F +T FRP Q IN L +D ++MP D P ++
Sbjct: 1 VDSILADVFRITTGFRPAQRGVINATLSGRDVFVVMPAGGGKSLTYQLPAIIDAP---KL 57
Query: 56 RSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMP----TGKLLKKKKICLMTESSSLKL 111
V+ +L + + Q+ AI + A T +LL + L L
Sbjct: 58 TLVVSPLLSLIEDQVEQMNAIGVGARALTAATSSEEQNETLRLLDDPETRPDPTPPRLCL 117
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEK+AKSK +TKL+K ++AG LAR+ +DE HC S+WGH+FRPDY+ L I KT FP
Sbjct: 118 LYVTPEKVAKSKRLITKLEKAHRAGRLARVVLDEAHCVSAWGHEFRPDYRKLGIFKTQFP 177
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP+L TATAT +V DV +LQI C + RPNL YEV +KP+A+KD D L
Sbjct: 178 SVPVLACTATATPRVQRDVIDVLQIRGCAKFRTSVQRPNLRYEVVLKPSAKKDSDDLLCR 237
Query: 232 LM--------SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------- 276
++ + + + I+Y S +E E E L N G+ YHA
Sbjct: 238 IVLGAMGPDATPKPNCGAAIVYCFSQREAEQCAEVLTNGGITSLPYHAGYTEESRRAVHT 297
Query: 277 ------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+G++KP+VR V+HH +SKS+E++YQ S G
Sbjct: 298 RWSRGDSVRVMCATVAFGMGVNKPDVRLVVHHTVSKSVESYYQESGRAG 346
>gi|50307299|ref|XP_453628.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642762|emb|CAH00724.1| KLLA0D12694p [Kluyveromyces lactis]
Length = 1367
Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 171/336 (50%), Gaps = 74/336 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK------------- 93
Y W+ + L+ F L FRPNQL A+N L KDA ++MPT GK
Sbjct: 577 YAWTSEMYHKLRHVFGLDSFRPNQLEAVNATLQGKDAFVLMPTGGGKSLCYQLPAIVKSG 636
Query: 94 -----------------------LLKKKKICLMTESSS---------------LKLLYVS 115
L K K + + + L+L+Y+S
Sbjct: 637 RTSGTTIVVSPLISLMQDQVEHLLAKDIKASMFSSKGTAEQRRMTFNLFMNGLLELVYIS 696
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE + S + K+Y+ G LARI +DE HC S+WGHDFRPDY+ LS K +PD+P+
Sbjct: 697 PEMIKASVQCKKAISKLYEHGKLARIVVDEAHCVSNWGHDFRPDYKELSFFKQEYPDIPM 756
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATA+ +V +D+ LQ+ + V +K FNR NLFY+V K +K+ + ++ D++
Sbjct: 757 IALTATASEQVRMDIIHNLQLNNPVFLKQSFNRTNLFYQVLKK---EKNSIFQMCDMIRT 813
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
+F+NQ+GIIY S CE ++ G++ + YHA ++ +
Sbjct: 814 KFKNQTGIIYCHSKNSCEQTSALMQKNGVKCAFYHAGMDPDERFQVQQDWQADRVQVICA 873
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFV H + +++E +YQ + G
Sbjct: 874 TVAFGMGIDKPDVRFVFHFTVPRTLEGYYQETGRAG 909
>gi|301116896|ref|XP_002906176.1| ATP-dependent helicase, RECQ family protein [Phytophthora infestans
T30-4]
gi|262107525|gb|EEY65577.1| ATP-dependent helicase, RECQ family protein [Phytophthora infestans
T30-4]
Length = 513
Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 104/228 (45%), Positives = 138/228 (60%), Gaps = 16/228 (7%)
Query: 102 LMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQ 161
L+ S+LK+L V+PEKL KSK M++L+K Y+ G L R IDE HCCS WGHDFR DY
Sbjct: 69 LLDSDSTLKILLVTPEKLIKSKLLMSRLEKAYQTGRLKRFVIDEAHCCSQWGHDFRSDYA 128
Query: 162 YLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAA 221
L I+K +P VPIL LTATAT ++ DV+ +L+I+ CV + F R NL YEV+ KPA
Sbjct: 129 KLGIIKRQYPKVPILALTATATPRLAKDVKTILEIQQCVSFRTSFLRSNLHYEVKEKPAK 188
Query: 222 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----- 276
+D L L+ + +GI+Y + KE E + + L +R + YHA +E
Sbjct: 189 DAAAMDCLVRLVKSFSSSDTGIVYCLTRKETEQVAQHLHQANIRAACYHAHVEKKEEIHM 248
Query: 277 -----------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFGLGI+KP+VRFVIH LSKS+E +YQ S G
Sbjct: 249 AWIRNKLQVVVATIAFGLGINKPDVRFVIHFTLSKSIEGYYQESGRAG 296
>gi|443898809|dbj|GAC76143.1| hypothetical protein PANT_19d00137 [Pseudozyma antarctica T-34]
Length = 1364
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 120/357 (33%), Positives = 178/357 (49%), Gaps = 78/357 (21%)
Query: 37 LKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---- 92
L D + MP D+ W+ V ++ F L FR NQL AIN L+ +D ++MPTG
Sbjct: 621 LSLDVVSTMP-DHKWTRDVVYTMRHFFKLKRFRANQLEAINGTLMGRDVFVLMPTGGGKS 679
Query: 93 -------------------------------------------------KLLKKKKICL- 102
K K+ +C
Sbjct: 680 LCYQLPACVDSGSTKGITIVVSPLLSLIQDQVRHLLSLGIIAAKLTGDMKHADKQTVCAE 739
Query: 103 -MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQ 161
++ S+++L+YV+PE + +S T L +++ +AR +DE HC S WGHDFRP Y
Sbjct: 740 ALSSQSAVRLIYVTPEFIRQSNQAKTLLNDLHRRKRIARFVVDEAHCVSQWGHDFRPHYT 799
Query: 162 YLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAA 221
L L+ +P+VPI+ LTATA +V+ DV++ L ++D + + FNRPNL Y+VR KP
Sbjct: 800 ELGALRDDYPNVPIMALTATANERVIKDVKEHLHMKDVIQLSQSFNRPNLEYQVRPKPGN 859
Query: 222 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN---- 276
+ L+E++ L+ ++Q GIIY S + CE + +L + G+ YHAKL ++
Sbjct: 860 K--VLEEISSLILTSHKDQCGIIYCFSRESCETVAHDLSTKYGISAHHYHAKLSADDRAM 917
Query: 277 --------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH KS+E +YQ + G GK S
Sbjct: 918 VQQKWQQNKFRVIVATIAFGMGIDKPDVRFVIHHSAPKSLEGYYQETGRAGRDGKSS 974
>gi|156844324|ref|XP_001645225.1| hypothetical protein Kpol_1060p23 [Vanderwaltozyma polyspora DSM
70294]
gi|156115884|gb|EDO17367.1| hypothetical protein Kpol_1060p23 [Vanderwaltozyma polyspora DSM
70294]
Length = 1280
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 108/337 (32%), Positives = 173/337 (51%), Gaps = 74/337 (21%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
DY W++ + L + F + FR NQL AIN L +D ++MPTG
Sbjct: 513 DYNWTEELYYRLHNTFRIQSFRQNQLEAINATLSGRDVFVLMPTGGGKSLCYQLPAIVKS 572
Query: 94 ------------------------LLKKKKICLMTESSS---------------LKLLYV 114
L K K C+++ S+ L L+Y+
Sbjct: 573 GTTSGTTIVISPLISLMQDQVEHLLDKNIKACMISSKSTAAQRKETFNLFVNGLLDLVYI 632
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
SPE ++ S+ + K+Y + L+RI +DE HC S+WGHDFRPDY+ LS K +P++P
Sbjct: 633 SPEMISASQQCKRAINKLYSSSKLSRIVVDEAHCVSNWGHDFRPDYKSLSFFKREYPNIP 692
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
++ LTATA+ +V +D+ L++ + + +K FNR NL Y+V+ A K+ ++E+ L+
Sbjct: 693 LVALTATASEQVRMDIIANLEMHNPLTLKQSFNRTNLNYQVK---AKSKETINEICTLLK 749
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------ 276
RF+NQSGIIY S CE + E++ +R + YHA ++
Sbjct: 750 GRFKNQSGIIYCHSKNSCEQVAEQISQHKIRCAFYHAGIDPAERLQIQKAWQKNQIQVIC 809
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VR+V H+ + +++E +YQ + G
Sbjct: 810 ATVAFGMGIDKPDVRYVFHYTVPRTLEGYYQETGRAG 846
>gi|302308466|ref|NP_985391.2| AFL159Wp [Ashbya gossypii ATCC 10895]
gi|299790644|gb|AAS53215.2| AFL159Wp [Ashbya gossypii ATCC 10895]
Length = 1323
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 116/343 (33%), Positives = 174/343 (50%), Gaps = 75/343 (21%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK------------- 93
+PWS + L + F L FRPNQL A+N L KD ++MPT GK
Sbjct: 546 HPWSAELYHKLHNVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAIVKAG 605
Query: 94 -----------------------LLKKKKICLMTESSS---------------LKLLYVS 115
L K K + + + L L+Y+S
Sbjct: 606 CTHGTTIVISPLISLMHDQVEHLLAKNIKASMFSSKGTAEQRRQTFNLFINGLLDLVYIS 665
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE ++ S +QK+Y+ LARI +DE HC S+WGHDFRPDY+ L K +PD+P+
Sbjct: 666 PEMVSASVQCRNAIQKLYRDKKLARIVVDEAHCVSNWGHDFRPDYKELKFFKVEYPDIPM 725
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
L LTATA+ +V +D+ L +++ V +K FNR NL+YEV K K+ L +++ +
Sbjct: 726 LALTATASEQVRMDIIHNLHLKEPVFLKQSFNRSNLYYEVLRK---DKNSLKDISHSIKT 782
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
RF+ Q+GIIY S CE +++ G+R + YHA +E +
Sbjct: 783 RFKGQTGIIYCHSKNSCEQTAAIVQDSGVRCAYYHAGMEPDERLAIQQQWQSDKIQVICA 842
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GIDKP+VRFV H+ + +++E +YQ + G GK+S+
Sbjct: 843 TVAFGMGIDKPDVRFVYHYTVPRTLEGYYQETGRAGRDGKYSY 885
>gi|328770877|gb|EGF80918.1| hypothetical protein BATDEDRAFT_10941 [Batrachochytrium
dendrobatidis JAM81]
Length = 573
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 121/337 (35%), Positives = 176/337 (52%), Gaps = 40/337 (11%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------- 52
+PW+ +V VL+ F+LTDFR NQL +IN L D I+MPT S
Sbjct: 25 TFPWTKQVFKVLQEVFHLTDFRQNQLESINATLNSIDCFILMPTGGGKSLCYQLPACCTT 84
Query: 53 ---DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSL 109
+ V+ +L + ++L +NI + + + + + L E
Sbjct: 85 GKTTGLTVVISPLLSLIQDQVSRLVQLNILAIAISSDMSAEDKRWAYDE---LRKEPLPP 141
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169
K++YV+PE + +S F T L +++ G LAR +DE HC S WGHDFRPDY+ LS L+
Sbjct: 142 KMIYVTPELVMRSGQFKTALNDLFRRGRLARFVVDEAHCVSQWGHDFRPDYKELSTLRVQ 201
Query: 170 FPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLD-E 228
+P VPI+ LTATA KV +D+ K+L I C + FNR NL Y+VR K LD +
Sbjct: 202 YPTVPIIALTATANDKVKMDIIKVLNIPQCAKFQQSFNRSNLRYDVRKKDKG----LDAD 257
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
+ + + N SGIIY +S K CE +L G++ + YHA L+
Sbjct: 258 ITAFIKTFYPNASGIIYCSSRKACEATSAKLCKLGIKAAFYHAGLDKEDRSRIQTAWATN 317
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDK +VRFVIH+ + +S+E +YQ
Sbjct: 318 SVHIIVATIAFGMGIDKGDVRFVIHYSIPQSLEGYYQ 354
>gi|223998386|ref|XP_002288866.1| probable atp-dependent DNA helicase Q5 [Thalassiosira pseudonana
CCMP1335]
gi|220975974|gb|EED94302.1| probable atp-dependent DNA helicase Q5 [Thalassiosira pseudonana
CCMP1335]
Length = 515
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 117/341 (34%), Positives = 188/341 (55%), Gaps = 32/341 (9%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
YPW DR+ L++ F++T+FR +Q IN L D ++M T S ++ +VL+++
Sbjct: 4 YPWQDRMMHHLRNTFHITNFRDHQHDIINSTLSGHDVFVVMRTGGGKSLTYQLPAVLEAE 63
Query: 63 FN----------LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE-SSSLKL 111
+ L +Q +N L G ++ L+ + + + L
Sbjct: 64 SDKRKVTVVISPLISLIRDQEEQMNEMLPGSALSFTSGLGSAEHNRRWGLVRDRNEGVAL 123
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
++V+PEK+ KS F +++K+ + G L R IDE HC WGHDFRPDY L I K FP
Sbjct: 124 IFVTPEKVGKSGRFKGEMEKLNEQGRLGRFVIDECHCACQWGHDFRPDYTKLGIFKHHFP 183
Query: 172 DVPILGLTATATTKVMLDVQKMLQI-EDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA 230
VP+L +TATA+ +V D ++L++ ++ ++ NRPNL Y V+ KP + ++++
Sbjct: 184 SVPVLAVTATASDRVRDDCIQILRLGKNYRFFRSTANRPNLTYSVKTKPDGKDAIVNDMV 243
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL---------------ES 275
D + NQ+GIIYT S KE +++ ++L ++G+ AYH+ + E+
Sbjct: 244 DFIKTNHSNQAGIIYTFSRKEADNVADQLCDKGIIARAYHSDVADARKDNIHRSWMRNET 303
Query: 276 NV---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
V +IAFGLGI+KP+VRFV+HH +SKS+E +YQ S G
Sbjct: 304 QVVVATIAFGLGINKPDVRFVLHHSISKSLEAYYQESGRAG 344
>gi|374108619|gb|AEY97525.1| FAFL159Wp [Ashbya gossypii FDAG1]
Length = 1323
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/343 (33%), Positives = 174/343 (50%), Gaps = 75/343 (21%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK------------- 93
+PWS + L + F L FRPNQL A+N L KD ++MPT GK
Sbjct: 546 HPWSAELYHKLHNVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAIVKAG 605
Query: 94 -----------------------LLKKKKICLMTESSS---------------LKLLYVS 115
L K K + + + L L+Y+S
Sbjct: 606 CTHGTTIVISPLISLMHDQVEHLLAKNIKASMFSSKGTAEQRRQTFNLFINGLLDLVYIS 665
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE ++ S +QK+Y+ LARI +DE HC S+WGHDFRPDY+ L K +PD+P+
Sbjct: 666 PEMVSASVQCRNAIQKLYRDKKLARIVVDEAHCVSNWGHDFRPDYKELKFFKVEYPDIPM 725
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
L LTATA+ +V +D+ L +++ V +K FNR NL+YEV K K+ L +++ +
Sbjct: 726 LALTATASEQVRMDIIHNLHLKEPVFLKQSFNRSNLYYEVLRK---DKNSLKDISHSIKT 782
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
RF+ Q+GIIY S CE +++ G+R + YHA +E +
Sbjct: 783 RFKGQTGIIYCHSKNSCEQTAAIVQDSGVRCAYYHAGMEPDERLAIQQQWQSDKIQVICA 842
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GIDKP+VRFV H+ + +++E +YQ + G GK+S+
Sbjct: 843 TVAFGMGIDKPDVRFVYHYTVPRTLEGYYQETGRAGRDGKYSY 885
>gi|158290315|ref|XP_311930.4| AGAP002967-PA [Anopheles gambiae str. PEST]
gi|157017834|gb|EAA07614.4| AGAP002967-PA [Anopheles gambiae str. PEST]
Length = 1425
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 161/335 (48%), Gaps = 72/335 (21%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT----------------- 91
Y S R++ K F L FRP QL IN LL D ++MPT
Sbjct: 635 YAHSARLQVAFKETFGLRTFRPIQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAVLTVG 694
Query: 92 --------------------------GKLLKKKKIC--------LMTESSSLKLLYVSPE 117
G L + + L + LKLLYV+PE
Sbjct: 695 LTIVVSPLKSLILDQVQKLNSLDIPAGHLSGEANMADVQRIYDDLYSSCPELKLLYVTPE 754
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
K++ S F L +Y+ L RI IDE HC S+WGHDFRPDY+ LS L+ FP VPI+
Sbjct: 755 KISSSAKFQNLLSALYRRSLLGRIVIDEAHCVSAWGHDFRPDYKKLSALREQFPTVPIIA 814
Query: 178 LTATATTKVMLDVQKMLQI-EDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATA +V +D+ L++ D FNRPNL Y V K E+ +L+ +R
Sbjct: 815 LTATANPRVRMDILAQLKLARDTRWFLCSFNRPNLKYLVLPKKGVSTKA--EMIELIRKR 872
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------S 278
F +GI+Y S KEC+ L +E R G++ +YHA L V +
Sbjct: 873 FPRDTGIVYCLSKKECDQLADEFRRAGIKAKSYHAGLSDGVREATQKEWIGDRIKVVCAT 932
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
IAFG+GIDKP+VR+V+H+C+ KS+E +YQ S G
Sbjct: 933 IAFGMGIDKPDVRYVLHYCMPKSIEGYYQESGRAG 967
>gi|164655522|ref|XP_001728890.1| hypothetical protein MGL_3884 [Malassezia globosa CBS 7966]
gi|159102778|gb|EDP41676.1| hypothetical protein MGL_3884 [Malassezia globosa CBS 7966]
Length = 841
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 187/343 (54%), Gaps = 39/343 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRSV 58
YPW D+VR L F L +FR +QL AIN L +D +MPT Y +
Sbjct: 176 YPWDDQVRHSLHHIFLLKEFRADQLEAINATLSGRDVFCLMPTGGGKSLCYQLPSTI--T 233
Query: 59 LKSKFNLTDFRPNQLAAIN---IALLKKDAIIIMPTGKLLKKKK----ICLMTESSSLKL 111
L LT LA I+ +LL+KD + TG + + L+ ++ +++L
Sbjct: 234 LGRTNGLTVVVSPLLALIHNQVKSLLRKDVPAMAITGDMSDADRRYASSELLRKNINVRL 293
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PE ++KS+ LQ +Y+ LAR IDE HC WGHDFRPDY L++L+ +P
Sbjct: 294 LYVTPEFISKSRLASQLLQHLYQTHQLARFVIDEAHCVDQWGHDFRPDYVRLNLLRKTYP 353
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDEL 229
VPI+ LTATA + +Q+ L + + +V++ FNRPNL Y+V +++ +A L+ +
Sbjct: 354 TVPIMALTATARIDTVQSIQQSLGMRNALVLRQSFNRPNLTYKVCPKMRGSA---TLETI 410
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN------------ 276
A ++ + N+ GIIY S ++CE++ +L N+ G++ +HA L
Sbjct: 411 AAIIQKHHANECGIIYCLSRRDCENVSTDLGNKYGIQARHFHAGLNIEDKLRIQEGWEAG 470
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDK +VRFVIHH + KS+E +YQ + G
Sbjct: 471 TFKVIVATIAFGMGIDKADVRFVIHHSMPKSLEGYYQETGRAG 513
>gi|426248114|ref|XP_004017810.1| PREDICTED: Bloom syndrome protein [Ovis aries]
Length = 1429
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 131/361 (36%), Positives = 180/361 (49%), Gaps = 78/361 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------- 52
N+P + + + KF L +FR NQL AIN ALL +D I+MPT S
Sbjct: 660 NFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 719
Query: 53 --------------DRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
D+V+ + + + + D ++ +I + L KKD II
Sbjct: 720 GVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPII------- 772
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y+ G LAR IDE HC S WGH
Sbjct: 773 ---------------KLLYVTPEKVCASNRLISTLENLYERGLLARFVIDEAHCVSQWGH 817
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFRPDY+ ++IL+ FP VP++ LTATA +V D+ L+I V FNR NL Y
Sbjct: 818 DFRPDYKRMNILRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYY 877
Query: 215 VRIKPAAQK--DCLDELADLMSRRFR-NQSGIIYTTSIKECEDLREELRNRGLRVSAYHA 271
V K + DCL+ + R++ + SGIIY S +EC+ + E L+N GL AYHA
Sbjct: 878 VLPKKPKKVAFDCLEWI-----RKYHPHDSGIIYCLSRRECDTMAETLQNDGLAALAYHA 932
Query: 272 KLESN-------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAF 312
L + +IAFG+GIDKP+VRFVIH L KS+E +YQ S
Sbjct: 933 GLSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRA 992
Query: 313 G 313
G
Sbjct: 993 G 993
>gi|167535712|ref|XP_001749529.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771921|gb|EDQ85580.1| predicted protein [Monosiga brevicollis MX1]
Length = 2199
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 176/324 (54%), Gaps = 40/324 (12%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSDRVRSVLKSKF 63
K +F L FRP+QL A+N ALL +D ++MPT S V V+
Sbjct: 600 AFKQRFGLHRFRPHQLEAVNAALLGQDCFVLMPTGGGKSLCYQLPAVTSRGVTVVISPLI 659
Query: 64 NLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC--LMTESSSLKLLYVSPEKLAK 121
+L + L A+ I +L + T ++ ++ L ++ LLY++PE+L K
Sbjct: 660 SLIQDQVAGLQALGIRVL-----FLSSTQSRAEQNEVHRQLCADAVQDDLLYITPERL-K 713
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
S + ++ G LAR IDE HC S WGHDFRPDY+ L I++ FP VP++ LTAT
Sbjct: 714 SSMMRQTFESLHARGLLARFVIDEAHCVSQWGHDFRPDYKELQIVRQWFPRVPLMALTAT 773
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQS 241
AT +V DV +L ++ V ++ FNR NLFYEVR K +K ++A ++++ R S
Sbjct: 774 ATPRVKEDVLNILGMQRAVTFQSSFNRTNLFYEVRPK---KKSLFADIAAIVAKN-RGSS 829
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGL 283
GI+Y S ++ E +L+ RG++ AYHA L+ + +IAFG+
Sbjct: 830 GIVYCMSRRDAETTALDLQRRGIKALAYHAGLDPGLRSEVQDVWARSRADIICATIAFGM 889
Query: 284 GIDKPNVRFVIHHCLSKSMENFYQ 307
GIDKP+VR+VIH L KSME +YQ
Sbjct: 890 GIDKPDVRYVIHATLPKSMEGYYQ 913
>gi|320581820|gb|EFW96039.1| ATP-dependent helicase [Ogataea parapolymorpha DL-1]
Length = 1277
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 118/342 (34%), Positives = 170/342 (49%), Gaps = 75/342 (21%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---------------- 92
+ W+ V SVL++ F L FR NQL AIN L +D ++MPTG
Sbjct: 508 FEWTTEVYSVLRNTFKLPSFRENQLEAINATLSGEDVFVLMPTGGGKSLCYQLPALVKSG 567
Query: 93 ---------------------KLLKKKKICLMTESSS----------------LKLLYVS 115
LL+ + M S S L L+Y+S
Sbjct: 568 ITSGTTIVISPLISLMQDQVHHLLQNQIKAAMINSKSSASQRKQTFDLFVNGFLDLVYLS 627
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE ++ S + ++K LAR+ +DE HC SSWGHDFRPDY+ LS KT +P++P+
Sbjct: 628 PEMISASGMVRNAIATLHKKKMLARVVVDEAHCVSSWGHDFRPDYKALSYFKTEYPEIPM 687
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATA V +D+ L ++ K FNR NL+YEV K +K ++E+A L++R
Sbjct: 688 MALTATANEHVRMDIIHNLNLKHPKFFKQSFNRSNLYYEVLPK---KKTVVEEIAQLINR 744
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
+++N +GIIY S CE L + G++ YHA + +
Sbjct: 745 KYKNMTGIIYCHSKNSCEQTATRLADYGIKCDFYHAGMTQDDRQRVQLGWQTNEIQVICA 804
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIH L +++E +YQ + G GKHS
Sbjct: 805 TIAFGMGIDKPDVRFVIHLTLPRNLEGYYQETGRAGRDGKHS 846
>gi|406603614|emb|CCH44869.1| bloom syndrome protein [Wickerhamomyces ciferrii]
Length = 1521
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 185/345 (53%), Gaps = 35/345 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
+ W+ V L+ F L+ FR NQL A+N L KD ++MPT S ++ +V+KS
Sbjct: 686 HEWTPEVFEKLRQIFKLSSFRQNQLEAVNATLSGKDTFVLMPTGGGKSLCYQLPAVVKSG 745
Query: 63 FN---------LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLY 113
L +Q+ + +K A +I G +++ + L L+Y
Sbjct: 746 VTHGTTIVVSPLISLMQDQVEHLWEKNIK--AGMINSKGSPEERRTTFNLFVDGFLDLVY 803
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
+SPE ++ S + ++Y+ G LAR+ +DE HC SSWGHDFRPDY++LS KT +P++
Sbjct: 804 LSPEMISASNQAKNAIDRLYRQGKLARVVVDEAHCVSSWGHDFRPDYKHLSYFKTNYPEI 863
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
P++ LTATA V +D+ L ++D V +K FNR NLFYEV K KD + + +
Sbjct: 864 PVMALTATANDHVKMDIIHNLNLKDPVFLKQSFNRTNLFYEVLNK---DKDHMKHIEMSI 920
Query: 234 SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------- 276
+F++Q+GIIY S CE ++L N G++ + YHA +
Sbjct: 921 LGKFKDQTGIIYCHSKNACEQTSDKLINSGIKCAFYHAGMTPEDRLDIQKAWQNGTIKVI 980
Query: 277 -VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
+IAFG+GIDK +VRFVIH L +++E +YQ + G G +S+
Sbjct: 981 CATIAFGMGIDKADVRFVIHLTLPRTLEGYYQETGRAGRDGNYSY 1025
>gi|195451292|ref|XP_002072850.1| GK13825 [Drosophila willistoni]
gi|194168935|gb|EDW83836.1| GK13825 [Drosophila willistoni]
Length = 1457
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/337 (35%), Positives = 163/337 (48%), Gaps = 77/337 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC-----LM 103
+ S R+ L F L FRPNQL IN ALL D ++MPTG K +C ++
Sbjct: 679 FDHSSRMTQALSYSFGLKSFRPNQLQVINAALLGNDCFVLMPTGG---GKSLCYQLPAIL 735
Query: 104 TESSSL-------------------------------------------------KLLYV 114
TE ++ KLLYV
Sbjct: 736 TEGVTIVISPLKSLIFDQVNKLASLDICAKSMSGEQSMSDAMTIYRDLESHPPLVKLLYV 795
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PEK++ S F L + ++R IDE HC S WGHDFRPDY+ L IL+ FP+VP
Sbjct: 796 TPEKISSSARFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGILRKRFPNVP 855
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
+ LTATAT +V LD+ L + C + FNR NL Y+V K A L++++ +
Sbjct: 856 TMALTATATPRVRLDILSQLNLTQCKWFLSSFNRSNLRYKVLPKKGAS--TLEDISAFIK 913
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------ 276
R N SGIIY S KEC+D+ +++ G+R AYHA L
Sbjct: 914 SRPANSSGIIYCLSRKECDDVSQKMCKAGIRSVAYHAGLSDTERESRQKDWILSKVRVIC 973
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFV+H+ L KS+E +YQ + G
Sbjct: 974 ATIAFGMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAG 1010
>gi|354548256|emb|CCE44993.1| hypothetical protein CPAR2_407960 [Candida parapsilosis]
Length = 1080
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/337 (36%), Positives = 174/337 (51%), Gaps = 40/337 (11%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP--------------WSDR 54
D V L F L FRPNQL A+ +LL KD ++MPT S
Sbjct: 550 DEVYDTLNKVFKLQSFRPNQLEAVVASLLNKDVFVLMPTGGGKSLCYQLPALIKGGHSKG 609
Query: 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYV 114
V+ +L + L NI K +I K + L E L ++Y+
Sbjct: 610 TTVVISPLISLMQDQVQHLIHKNI----KAGMISSKANSDDNKHTLNLFREGF-LDIVYL 664
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
SPEK KS + ++Y+ LAR+ IDE HC SSWGHDFRPDY+ + K FP VP
Sbjct: 665 SPEKANKSTMIQKIIGRLYERNQLARVVIDEAHCLSSWGHDFRPDYKGMGFFKERFPAVP 724
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
I+ LTATA KV +D+ L+++ V +K FNR NL+YE+R K + L+ + D +
Sbjct: 725 IMALTATANEKVRMDIVHHLKMDSPVYLKQSFNRTNLYYEIRWKSG---NYLESMKDYIL 781
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA--------KLESN---------- 276
R++N+ GIIY S + CE +L + GL+ S YHA K+++N
Sbjct: 782 SRYKNKCGIIYCHSKQSCEQTSAKLNSFGLKTSFYHAGMSPEDRFKIQTNWQKNKIQLIC 841
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH + +S+E +YQ + G
Sbjct: 842 ATIAFGMGIDKPDVRFVIHLFIPRSLEGYYQETGRAG 878
>gi|150866421|ref|XP_001386017.2| ATP-dependent DNA helicase [Scheffersomyces stipitis CBS 6054]
gi|149387677|gb|ABN67988.2| ATP-dependent DNA helicase, partial [Scheffersomyces stipitis CBS
6054]
Length = 1148
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 126/338 (37%), Positives = 185/338 (54%), Gaps = 31/338 (9%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLK-SKFNL 65
D V SVL S F L FR NQL A+ +L KD ++MPT S ++ +++K K N
Sbjct: 455 DEVYSVLNSVFKLQSFRSNQLEAVCASLQSKDVFVLMPTGGGKSLCYQLPALVKGGKTNG 514
Query: 66 TDFRPNQLAAIN----IALLKKD--AIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKL 119
T + L ++ LL K+ A +I + K+ + L L+Y+SPEK
Sbjct: 515 TTVVISPLISLMQDQVQHLLDKNVKAGMISSKATAEENKQTMHLFREGFLDLVYLSPEKA 574
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
S + K+Y+ LAR+ IDE HC SSWGHDFRPDYQ + + K +P+VPI+ LT
Sbjct: 575 NTSNVVQKIISKLYETNRLARVVIDEAHCLSSWGHDFRPDYQSMGLFKERYPNVPIMALT 634
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATA KV LD+ L++E+ V++K FNR NL+YE++ K A + ++ + D + + N
Sbjct: 635 ATANEKVRLDIVHNLKMENAVLLKQSFNRTNLYYEIKWKAA---NYVEWIKDYILKNQNN 691
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAF 281
++GIIY S + CE +L + GL + YHA + +IAF
Sbjct: 692 KTGIIYCHSKQSCEQTSAKLNSFGLHTAFYHAGMSPQDRFDIQSQWQTGRIQLICATIAF 751
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
G+GIDKP+VR+VIH + +S+E +YQ + G GK S
Sbjct: 752 GMGIDKPDVRYVIHLFIPRSLEGYYQETGRAGRDGKQS 789
>gi|281204428|gb|EFA78623.1| ATP-dependent DNA helicase RecQ family protein [Polysphondylium
pallidum PN500]
Length = 1358
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 175/335 (52%), Gaps = 73/335 (21%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMP------------------ 90
+PWS+++ S ++ F FR NQ IN ++ D ++MP
Sbjct: 670 FPWSEKINSTNRNIFGNRSFRLNQEEIINASMAGHDIFVLMPTGGGKSLCYQIPALLADG 729
Query: 91 -----------------------------TGKLLKKKKI----CLMTESSSLKLLYVSPE 117
TG + +++ L +++ ++KLLY++PE
Sbjct: 730 LTIIISPLISLIQDQVMLLQNLSYPTAALTGSISSEEQTRIFKELRSDNPTIKLLYLTPE 789
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
K+ +S S ++ ++ G L R IDE HC S WGHDFRPDY+ L+ILK FP +PIL
Sbjct: 790 KVVQSTSIISLFHQLNSRGKLIRAVIDEAHCVSQWGHDFRPDYKQLAILKREFPKLPILA 849
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR- 236
LTATAT +V DV L ++D + K FNRPNL Y V K +K +D++ + ++
Sbjct: 850 LTATATERVKQDVIFNLSMKDSITFKQSFNRPNLIYAVVKK---KKSIIDDIIEFITANG 906
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL--------ESN----------VS 278
++ +SGIIY S ECE + +EL ++GL+V YHAK+ + N +
Sbjct: 907 YKQKSGIIYCFSTFECEKVAQELNSKGLKVKFYHAKMTPEDRQRTQENWTRDRVKIIVST 966
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
IAFG+GI+KP+VRFVIHH L KS+E +YQ S G
Sbjct: 967 IAFGMGINKPDVRFVIHHSLPKSLEGYYQESGRAG 1001
>gi|449015395|dbj|BAM78797.1| ATP-dependent DNA helicase RecQ [Cyanidioschyzon merolae strain 10D]
Length = 1603
Score = 202 bits (514), Expect = 2e-49, Method: Composition-based stats.
Identities = 131/344 (38%), Positives = 187/344 (54%), Gaps = 46/344 (13%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKF 63
NYPWS ++ + +F FR NQ AIN A+ +D ++MPT S L +
Sbjct: 763 NYPWSAQLHHNNRVQFGNQGFRANQKEAINAAMCGRDVFVLMPTGGGKS------LVYQL 816
Query: 64 NLTDFRP---------NQLAAINIALLKKDAIIIMPTGKLL----KKKKICLMTESSSL- 109
T P + L ++ + + + + +P G L + + LM + SL
Sbjct: 817 AATLTGPAGCGVTVVVSPLKSLIMDQVMRLQALRIPCGALCGATSETESRELMRDLRSLH 876
Query: 110 ---KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
++LYV+PEK++ S++F + L + LAR IDE HC S WGHDFRPDY+ LS+
Sbjct: 877 PKTRILYVTPEKISLSEAFRSILDWLASRKLLARFVIDEAHCVSQWGHDFRPDYKRLSLC 936
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
K +P VP++ LTATAT +V DV+ L I CV K FNRPN+ YEV +K K +
Sbjct: 937 KQRYPSVPLMALTATATREVREDVKVQLGIPRCVTFKQSFNRPNISYEVYLKGPRSK-TV 995
Query: 227 DELADLMSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSA--YHAKL--ESNV---- 277
+ +A+ + R SGIIY S +ECED+ + LR R R++A YHA L ES +
Sbjct: 996 EWIAEFIQNEMPRGASGIIYCFSKQECEDVAKALR-RQFRIAAEHYHAGLTDESRIAVQQ 1054
Query: 278 ------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
+IAFG+GIDKP+VRFVIH+ + K++E FYQ S
Sbjct: 1055 RWMRRATQVIVATIAFGMGIDKPDVRFVIHYTMPKNVEGFYQES 1098
>gi|50292717|ref|XP_448791.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528104|emb|CAG61761.1| unnamed protein product [Candida glabrata]
Length = 1371
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 178/341 (52%), Gaps = 75/341 (21%)
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD-------------------------- 84
W+ V LK+ FNLT FR NQ AIN L KD
Sbjct: 611 WTKEVYKKLKTVFNLTSFRSNQEEAINATLSGKDVFVLMPTGGGKSLCYQLPAIVKGGCT 670
Query: 85 ---AIIIMPTGKLLKKK---------KICLMTESSS---------------LKLLYVSPE 117
I+I P L++ + K +++ L L+Y+SPE
Sbjct: 671 KGTTIVISPLISLMQDQVEHLQKLNVKARMLSSKGGIDEKNHTFNLFINGFLDLIYLSPE 730
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
++ S+ T ++K+Y+ LARI +DE HC S+WGHDFRPDY+ LS K +PD+P++
Sbjct: 731 MISVSEKCKTAIEKLYQNKQLARIVVDEAHCVSNWGHDFRPDYKQLSYFKVQYPDIPMMA 790
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATA+ +V +D+ L+++D + ++ FNR NL+YEVR K K+ + E+ D + ++F
Sbjct: 791 LTATASEQVQMDIVFNLKLKDNLFLRQSFNRTNLYYEVRKKT---KNTIFEICDTIKQQF 847
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSI 279
RNQ+GIIY S CE ++++ G++ + YHA +E++ ++
Sbjct: 848 RNQTGIIYCHSKNSCEQTAQQMQRNGIKCAYYHAGMEADERLQVQREWQNDNLQVICATV 907
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
AFG+GIDK +VRFV H + +++E +YQ + G G +S+
Sbjct: 908 AFGMGIDKADVRFVFHFTVPRTLEGYYQETGRAGRDGNYSY 948
>gi|255072509|ref|XP_002499929.1| predicted protein [Micromonas sp. RCC299]
gi|226515191|gb|ACO61187.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 454
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 125/360 (34%), Positives = 175/360 (48%), Gaps = 94/360 (26%)
Query: 45 MPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL------- 95
M D+ WS R R VL++ FN DFR QLA IN + +D++++MPT GK L
Sbjct: 1 MRDDFEWSARARQVLRNTFNAQDFRGMQLATINCTMSGEDSLVLMPTGGGKSLCYQLPAV 60
Query: 96 ------------------------------------KKKKICLMTES------SSLKLLY 113
+K+ + ++ LKLLY
Sbjct: 61 LSPGVTIVISPLVSLIQDQLHHLSEMNIPAGVLGSMEKEGAAVQNQTYTQLRNDELKLLY 120
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
++PEK+AKS M L++++ G L+RI +DEVHC SSWGHDFR DYQ L ILK F DV
Sbjct: 121 LTPEKIAKSNKLMNTLEQLHNRGKLSRIVVDEVHCISSWGHDFRKDYQALRILKNRFRDV 180
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
P++GLTATAT +V D + L ++ C FNR N+ YEV+ K KD + ++ L+
Sbjct: 181 PLVGLTATATKRVQDDCVRQLGLQKCTRFFQTFNRTNIVYEVKPKT---KDIVKDMKALI 237
Query: 234 SRRFRN------QSGIIYTTSIKECEDLREELR---------NRGLRVSAYHAKLESN-- 276
+F N Q GI+Y S K+CE + E L +GL YHA +
Sbjct: 238 HDKFTNHRNGKVQCGIVYCFSQKDCEKMAESLTCKPNDDKRWPKGLLALPYHAGMTDTDR 297
Query: 277 -----------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GI+KP+VRFV HH + KS+E ++Q S G
Sbjct: 298 KTGVPKRELHQRMWSDGKVPIICATVAFGMGINKPDVRFVFHHSIPKSLEGYHQESGRAG 357
>gi|121710174|ref|XP_001272703.1| RecQ family helicase MusN [Aspergillus clavatus NRRL 1]
gi|119400853|gb|EAW11277.1| RecQ family helicase MusN [Aspergillus clavatus NRRL 1]
Length = 1542
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 122/347 (35%), Positives = 173/347 (49%), Gaps = 78/347 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDA----------------------- 85
+PWS V+ VLK KF+L FR NQL AI+ L KD
Sbjct: 694 HPWSKDVKRVLKDKFHLRGFRMNQLEAIDATLSGKDTFVLMPTGGGKSLCYQLPSVVTTG 753
Query: 86 ------IIIMP----------------------TGKLLKKKKICLMTESSS------LKL 111
I++ P G+ + ++ +M S ++L
Sbjct: 754 STRGVTIVVSPLLSLMQDQVSHLKAINIKAFLLNGETKRDERTWIMQTLSGPVAEERIEL 813
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LY++PE + KS++ + L+K+ K LARI IDE HC S WGHDFRPDY+ L ++ P
Sbjct: 814 LYITPEMINKSQALIQSLEKLNKRHRLARIVIDEAHCVSQWGHDFRPDYKELGEIRNRLP 873
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP++ LTATAT V +D L++E C + FNRPNL YEVR K + +D +A+
Sbjct: 874 GVPMIALTATATENVKVDTIHNLKMEGCEIFTQSFNRPNLTYEVRQK-GKSSEVMDSIAN 932
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN-------------- 276
+ + N+SGI+Y S K CE + E L ++ ++ YHA + S
Sbjct: 933 TIKTSYPNKSGIVYCLSRKACESVAEILASKYKIKADFYHAGVASAKRAEVQERWQTGRV 992
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIHH + KS+E +YQ + G GK S
Sbjct: 993 HVIVATIAFGMGIDKPDVRFVIHHSIPKSLEGYYQETGRAGRDGKRS 1039
>gi|414868215|tpg|DAA46772.1| TPA: hypothetical protein ZEAMMB73_430838, partial [Zea mays]
Length = 368
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 157/282 (55%), Gaps = 14/282 (4%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
++PW + F ++ +R NQ IN + +D ++IM S D
Sbjct: 70 SFPWDLEADDTRFNIFGISSYRSNQREIINAVMSGRDVLVIMAAGGGKSLCYQLPAVLRD 129
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLY 113
+ V+ +L + L+A+ I + K + K L LK+LY
Sbjct: 130 GIALVVSPLLSLIQDQVMGLSALGIPAYMLTSTTNKEVEKFIYK---TLDKGEGELKILY 186
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
V+PEK++KSK FM+KL+K + AG L+ IAIDE HCCS WGHDFRPDY+ L ILK FP V
Sbjct: 187 VTPEKISKSKRFMSKLEKCHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKIQFPSV 246
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
P++ LTATAT+KV +D+ +ML I C+ + NRPNLFY+V K K +DE+ +
Sbjct: 247 PMIALTATATSKVQMDLMEMLHIPRCIKFVSTVNRPNLFYKVSEKSPVGKVVIDEITKFI 306
Query: 234 SRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 274
S + N+SGIIY S KECE + +ELR RG+ YHA ++
Sbjct: 307 SESYPNNESGIIYCFSRKECEQVAKELRERGISADYYHADMD 348
>gi|430814293|emb|CCJ28450.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1066
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 125/361 (34%), Positives = 179/361 (49%), Gaps = 82/361 (22%)
Query: 21 LTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIAL 80
+++F+ +L N++L K I YPW + V +LK+ F L +FR NQL AIN L
Sbjct: 469 VSEFKKTELFPENLSLTSKSKI-----GYPWLNDVFMILKNVFGLKEFRNNQLEAINTTL 523
Query: 81 LKKDAIIIMPT--GKLL------------------------------------------- 95
KD ++MPT GK L
Sbjct: 524 SGKDLFLLMPTGGGKSLCYQLPSLIDSGKTKGLTLVVSPLISLMQDQVEHLLDININSAS 583
Query: 96 --------KKKKICLMTESSSL--KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDE 145
K+K+I M S+ + KLLYV+PE LAK+ SF L +Y AR+ +DE
Sbjct: 584 INGETSSSKRKEIVKMLYSNDIYIKLLYVTPEFLAKNNSFNQALDHIYSKNKFARVVVDE 643
Query: 146 VHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAP 205
HC S WGHDFRPDY+ L +K + VP + LTATA V DV L I +CVV+
Sbjct: 644 AHCISQWGHDFRPDYKQLGQIKQKYQTVPFIALTATANEIVKKDVIHNLNINNCVVLSQS 703
Query: 206 FNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GL 264
FNRPN++Y V ++ + ++ D+++ ++ +SGIIY S K CED + R++ +
Sbjct: 704 FNRPNIYYNVVVRNIS---VYSDIRDIITSKYPGKSGIIYCFSRKNCEDTARKFRDKYHM 760
Query: 265 RVSAYHAKLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFY 306
++ YHA + + +IAFG+GIDK +VRFVIH L KS+E +Y
Sbjct: 761 KIHHYHAGMTNKERSQVQKDWKKGKYHIIVATIAFGMGIDKSDVRFVIHLFLPKSLEGYY 820
Query: 307 Q 307
Q
Sbjct: 821 Q 821
>gi|307195272|gb|EFN77228.1| Bloom syndrome protein-like protein [Harpegnathos saltator]
Length = 1091
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 176/340 (51%), Gaps = 39/340 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS------------ 52
Y S + + + KF L FRPNQL AIN L+ D ++MPT S
Sbjct: 391 YQHSQELLKIFRLKFGLYTFRPNQLQAINATLVGFDCFVLMPTGGGKSLCYQLPALLSTG 450
Query: 53 -DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
V S LKS L + +L +++I + + + + + ++ L + +LK+
Sbjct: 451 LTVVISPLKS---LILDQVQKLISLDIPAAQLSSSVTDKQAEAVYRE---LCKKEPALKI 504
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEK++ S+ F + +Y+ L R IDE HC S WGHDFRPDY+ L L+ +P
Sbjct: 505 LYVTPEKISASQKFCNTMTTLYERDLLTRFVIDEAHCVSQWGHDFRPDYKKLKCLRKNYP 564
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP + LTATAT +V D+ L + + FNRPNL Y + K K+C DE+
Sbjct: 565 KVPTMALTATATPRVRTDILHQLDMTKPKWFMSSFNRPNLRYSIISKKG--KNCSDEVVA 622
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--------------- 276
++ +F+N GI+Y S K+CED L+ ++ +YHA L N
Sbjct: 623 MIKTKFKNVCGIVYCLSRKDCEDYAAHLKKNCIKALSYHAGLTDNQRNNCQGKWILDEIH 682
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKPNVR+VIH L KS+E +YQ S G
Sbjct: 683 VICATIAFGMGIDKPNVRYVIHAALPKSIEGYYQESGRAG 722
>gi|355336772|gb|AER57871.1| ATP-dependent DNA helicase RecQ family protein [Acytostelium
subglobosum]
Length = 1147
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 120/334 (35%), Positives = 172/334 (51%), Gaps = 72/334 (21%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL----------- 95
Y W+D V + ++ F +R NQ+ IN + D ++MPT GK L
Sbjct: 472 YSWTDEVERINRTVFGNRSWRKNQVEIINACMSGHDVFVLMPTGGGKSLCYQIPAMCNEG 531
Query: 96 -----------KKKKICLM------------TESS---------------SLKLLYVSPE 117
+ ++ L+ T SS +LKLLY++PE
Sbjct: 532 VTIIISPLISLIQDQVMLLQTLAYPAAALTGTTSSEDVTQIYRDLRQTPPTLKLLYLTPE 591
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
K+ +S + M + + G LAR IDE HC S WGHDFRP+Y+ L +LKT FP +PIL
Sbjct: 592 KVVQSPAIMDLFRNLNNNGLLARAVIDEAHCVSQWGHDFRPNYKELKLLKTEFPSLPILA 651
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT +V DV L +++ + K FNRPNL Y V K K +D++A+ +++ +
Sbjct: 652 LTATATERVKKDVIFNLHMKNPITFKQSFNRPNLQYAVVKK---SKKIVDDIAEFINKFY 708
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSI 279
+SGI+Y S +C + ELR +GLR + YHA +E + +I
Sbjct: 709 PGKSGIVYCISRNDCVTVASELRKKGLRANFYHANMEPDERQRTQESWTRDRIKIIVSTI 768
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
AFG+GI+KP+VRFVIHH L KS+E +YQ S G
Sbjct: 769 AFGMGINKPDVRFVIHHSLPKSLEGYYQESGRAG 802
>gi|403411346|emb|CCL98046.1| predicted protein [Fibroporia radiculosa]
Length = 862
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 126/358 (35%), Positives = 185/358 (51%), Gaps = 44/358 (12%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
Y WSD +R +K+ F + +FR Q N + ++D I +MPT S ++ ++ S
Sbjct: 154 EYEWSDALRGKMKAVFGIDNFRLCQHGVCNANMDRRDIICVMPTGGGKSLTYQLPALFVS 213
Query: 62 KFNLTDFRPNQLAAINIALLKKDAI-IIMPTGKLLKKK------KICLMTESSS-----L 109
L L I L++ + +M T K++ ++ M S +
Sbjct: 214 GCTLVISPLISLMNDQILHLREAGVEAVMFTSSTSKEEAREIDNRLVAMAHGRSGSDADI 273
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169
KL YV+PEK+AK+K+FM L+K+YKA L R IDE HC S GHD+RPDYQ L++L+ +
Sbjct: 274 KLCYVTPEKIAKNKAFMPLLEKLYKARKLERFVIDEAHCVSEAGHDYRPDYQKLNVLRKV 333
Query: 170 FPDVPILGLTATATTKVMLDVQKMLQ------------IEDCVVIKAPFNRPNLFYEVRI 217
FP VPIL L+AT KVM D+ +LQ ++ V AP R NL Y V
Sbjct: 334 FPKVPILALSATCPPKVMQDLMDVLQMKQPLHHGDRAGVDGTVYFTAPLYRKNLHYSVLP 393
Query: 218 KPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN- 276
KP + K+ ++ +AD + + + SGIIY S K+ E + E+L R ++ YHA + +
Sbjct: 394 KPMSHKEMMNAMADYIMKHHADHSGIIYCLSKKDAETVSEDLSERRIKTGVYHADIGDSQ 453
Query: 277 -----------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKH 317
+IAFGLGIDK +VRFV+HH + KS++ YQ S G H
Sbjct: 454 KETLHQRWRQGLVKVVCATIAFGLGIDKGDVRFVLHHTIPKSVQGLYQESGRAGRDGH 511
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG 92
T+Y WSD +R +K+ F + +FR Q N + ++D I +MPTG
Sbjct: 153 TEYEWSDALRGKMKAVFGIDNFRLCQHGVCNANMDRRDIICVMPTG 198
>gi|448524540|ref|XP_003871523.1| Sgs1 RecQ-related DNA helicase [Candida orthopsilosis Co 90-125]
gi|380353345|emb|CCG26101.1| Sgs1 RecQ-related DNA helicase [Candida orthopsilosis]
Length = 1068
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 172/337 (51%), Gaps = 40/337 (11%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP--------------WSDR 54
D V L F L FRPNQL A+ +LL KD ++MPT S
Sbjct: 539 DEVYDTLNKVFKLQSFRPNQLEAVIASLLNKDVFVLMPTGGGKSLCYQLPALIKGGHSKG 598
Query: 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYV 114
V+ +L + L NI K +I K + L E L ++Y+
Sbjct: 599 TTVVISPLISLMQDQVQHLIHKNI----KAGMISSKANSDDNKHTLNLFREGF-LDIVYL 653
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
SPEK KS + K+Y LAR+ IDE HC SSWGHDFRPDY+ + K FP VP
Sbjct: 654 SPEKANKSTMIQKIIGKLYDRNQLARVVIDEAHCLSSWGHDFRPDYKGMGFFKERFPAVP 713
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
I+ LTATA KV +D+ L++ V +K FNR NL+YE+R K + L+ + D +
Sbjct: 714 IMALTATANEKVRMDIVHHLKMNSPVYLKQSFNRTNLYYEIRWKSG---NYLESMKDYIL 770
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA--------KLESN---------- 276
R++N+ GIIY S + CE +L + GL+ S YHA K+++N
Sbjct: 771 SRYKNKCGIIYCHSKQSCEQTSAKLNSFGLKTSFYHAGMTPEDRFKIQTNWQKNKIQLIC 830
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH + +S+E +YQ + G
Sbjct: 831 ATIAFGMGIDKPDVRFVIHLFIPRSLEGYYQETGRAG 867
>gi|194744401|ref|XP_001954683.1| GF16620 [Drosophila ananassae]
gi|190627720|gb|EDV43244.1| GF16620 [Drosophila ananassae]
Length = 1512
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 121/338 (35%), Positives = 166/338 (49%), Gaps = 77/338 (22%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC-----L 102
++ S R+ L F L FRPNQL IN +LL D ++MPTG K +C +
Sbjct: 670 NFEHSTRLMHGLSYSFGLKSFRPNQLQVINASLLGNDCFVLMPTGG---GKSLCYQLPAI 726
Query: 103 MTESSSL-------------------------------------------------KLLY 113
+TE ++ KLLY
Sbjct: 727 LTEGVTIVISPLKSLIFDQTNKLASLDICAKSLSGEQKLADAMAIYRDLEAQPPMVKLLY 786
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
V+PEK++ S F L + ++R IDE HC S WGHDFRPDY+ L ILK FP+V
Sbjct: 787 VTPEKISSSARFQDTLDTLNANNYISRFVIDEAHCVSQWGHDFRPDYKKLGILKKRFPNV 846
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
P + LTATAT +V LD+ L ++ C + FNR NL Y+V K A LD+++ +
Sbjct: 847 PTIALTATATPRVRLDILAQLNLKHCKWFLSSFNRSNLRYKVMPKKGAS--TLDDISGYI 904
Query: 234 SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------- 276
+ + SGIIY S KEC+D+ +++ G+R AYHA L N
Sbjct: 905 RSKPAHSSGIIYCLSRKECDDVAKKMCKDGVRAVAYHAGLTDNERETRQKDWLTGKLRVI 964
Query: 277 -VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFV+H+ L KS+E FYQ + G
Sbjct: 965 CATIAFGMGIDKPDVRFVLHYSLPKSIEGFYQEAGRAG 1002
>gi|302799268|ref|XP_002981393.1| hypothetical protein SELMODRAFT_10144 [Selaginella moellendorffii]
gi|300150933|gb|EFJ17581.1| hypothetical protein SELMODRAFT_10144 [Selaginella moellendorffii]
Length = 703
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 172/336 (51%), Gaps = 72/336 (21%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLLKKK--KIC- 101
+D+PWS +++ + F FRPNQ IN + D ++MPT GK L + IC
Sbjct: 16 SDFPWSMDLKANNRRYFGNKSFRPNQHEIINATMSGHDVFVLMPTGGGKSLTYQLPAICC 75
Query: 102 -------------LMTE--------------SSSL-------------------KLLYVS 115
+M + SS+L +LLYV+
Sbjct: 76 PGVTLVVCPLVSLIMDQIMHLSQASIRAEHLSSNLEYEEQRQILQQLNFDHCEYRLLYVT 135
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PEK+A+S + + L+ +++ LARI IDE HC S WGHDFRPDYQ L ILK F DVP+
Sbjct: 136 PEKIARSDNLLRNLENLHRRRLLARIVIDEAHCVSQWGHDFRPDYQNLGILKQKFSDVPL 195
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATAT +V DV + L + C++ + FNRPNL Y V K K +E+ +
Sbjct: 196 MALTATATMRVKEDVVQALGLCKCIIFRQTFNRPNLRYSVVPKT---KKVYEEIDAFIKE 252
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
+ +SGIIY S +CE + E+LR G ++ YHA ++
Sbjct: 253 NYPRESGIIYCFSKMDCERVCEQLRKTGHKIGFYHASMDPQERNRVQRMWSKDEINIICA 312
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GI+KP+VRFVIHH + KS+E ++Q S G
Sbjct: 313 TVAFGMGINKPDVRFVIHHSIPKSIEGYHQESGRAG 348
>gi|297487976|ref|XP_002696629.1| PREDICTED: Bloom syndrome protein [Bos taurus]
gi|296475516|tpg|DAA17631.1| TPA: Bloom syndrome, RecQ helicase-like [Bos taurus]
Length = 1430
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 129/360 (35%), Positives = 177/360 (49%), Gaps = 76/360 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------- 52
N+P + + + KF L +FR NQL AIN ALL +D I+MPT S
Sbjct: 661 NFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 720
Query: 53 --------------DRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
D+V+ + + + + D ++ +I + L KKD II
Sbjct: 721 GVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPII------- 773
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGH
Sbjct: 774 ---------------KLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGH 818
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFRPDY+ ++IL+ FP VP++ LTATA +V D+ L+I V FNR NL Y
Sbjct: 819 DFRPDYKRMNILRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYY 878
Query: 215 VRIKPAAQK--DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
V K + DCL + + + + SGIIY S +EC+ + E L+N GL AYHA
Sbjct: 879 VLPKKPKKVAFDCL----EWIRKHHPHDSGIIYCLSRRECDTMAETLQNDGLAALAYHAG 934
Query: 273 LESN-------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L + +IAFG+GIDKP+VRFVIH L KS+E +YQ S G
Sbjct: 935 LSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAG 994
>gi|440913178|gb|ELR62661.1| Bloom syndrome protein [Bos grunniens mutus]
Length = 1430
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 129/360 (35%), Positives = 177/360 (49%), Gaps = 76/360 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------- 52
N+P + + + KF L +FR NQL AIN ALL +D I+MPT S
Sbjct: 661 NFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 720
Query: 53 --------------DRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
D+V+ + + + + D ++ +I + L KKD II
Sbjct: 721 GVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPII------- 773
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGH
Sbjct: 774 ---------------KLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGH 818
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFRPDY+ ++IL+ FP VP++ LTATA +V D+ L+I V FNR NL Y
Sbjct: 819 DFRPDYKRMNILRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYY 878
Query: 215 VRIKPAAQK--DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
V K + DCL + + + + SGIIY S +EC+ + E L+N GL AYHA
Sbjct: 879 VLPKKPKKVAFDCL----EWIRKHHPHDSGIIYCLSRRECDTMAETLQNDGLAALAYHAG 934
Query: 273 LESN-------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L + +IAFG+GIDKP+VRFVIH L KS+E +YQ S G
Sbjct: 935 LSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAG 994
>gi|367001388|ref|XP_003685429.1| hypothetical protein TPHA_0D03600 [Tetrapisispora phaffii CBS 4417]
gi|357523727|emb|CCE62995.1| hypothetical protein TPHA_0D03600 [Tetrapisispora phaffii CBS 4417]
Length = 1280
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 174/336 (51%), Gaps = 74/336 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL----------- 95
+PWS V LK+ FNL FRPNQL AIN L +D ++MPT GK L
Sbjct: 528 FPWSSEVLFRLKNSFNLNSFRPNQLEAINSTLNGRDVFVLMPTGGGKSLCYQLPAIVKSG 587
Query: 96 ----------------------------------------KKKKICLMTESSSLKLLYVS 115
++KK + + L L+Y+S
Sbjct: 588 KTSGTTIVISPLISLMHDQVEHLLNINIKASMISSKSPAAQRKKTFNLFINGLLDLVYIS 647
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE ++ S+ ++++Y+ LARI +DE HC S+WGHDFRPDY+ L + K +P +P+
Sbjct: 648 PEMMSASQQCKRAIKRLYETNKLARIVVDEAHCVSNWGHDFRPDYKELKLFKREYPTIPL 707
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATA +V LD+ L + + +++K FNR NL Y +R K K+ ++E+ +
Sbjct: 708 IALTATANEQVQLDIINNLGVRNPLLLKQSFNRTNLDYIIRTKS---KNTVNEICSSLKT 764
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL------------ESN------V 277
F+NQSGIIY S CE + +++ ++ +R + YHA + ++N
Sbjct: 765 DFKNQSGIIYCNSKISCEQVAQQIASQKIRTAFYHAGMTPSERLKIQKAWQNNQVQVICA 824
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIH + +++E +YQ + G
Sbjct: 825 TVAFGMGIDKPDVRFVIHFTIPRTLEGYYQETGRAG 860
>gi|119913638|ref|XP_613809.3| PREDICTED: Bloom syndrome protein [Bos taurus]
Length = 1430
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 129/360 (35%), Positives = 177/360 (49%), Gaps = 76/360 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------- 52
N+P + + + KF L +FR NQL AIN ALL +D I+MPT S
Sbjct: 661 NFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 720
Query: 53 --------------DRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
D+V+ + + + + D ++ +I + L KKD II
Sbjct: 721 GVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPII------- 773
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGH
Sbjct: 774 ---------------KLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGH 818
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFRPDY+ ++IL+ FP VP++ LTATA +V D+ L+I V FNR NL Y
Sbjct: 819 DFRPDYKRMNILRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYY 878
Query: 215 VRIKPAAQK--DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
V K + DCL + + + + SGIIY S +EC+ + E L+N GL AYHA
Sbjct: 879 VLPKKPKKVAFDCL----EWIRKHHPHDSGIIYCLSRRECDTMAETLQNDGLAALAYHAG 934
Query: 273 LESN-------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L + +IAFG+GIDKP+VRFVIH L KS+E +YQ S G
Sbjct: 935 LSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAG 994
>gi|320167845|gb|EFW44744.1| DEAD/DEAH box helicase [Capsaspora owczarzaki ATCC 30864]
Length = 1784
Score = 200 bits (509), Expect = 7e-49, Method: Composition-based stats.
Identities = 115/337 (34%), Positives = 179/337 (53%), Gaps = 39/337 (11%)
Query: 4 NYPWSDRVRSVLKSKFNLTD-FRPNQLAAINIALLKKDAIIIMPT--------DYPW--S 52
+YPWS V+ ++ F L FR +QL IN + + +++MPT P S
Sbjct: 816 DYPWSGDVQKAMRKVFGLNKGFRTHQLEVINCTMSGRHCLVLMPTGGGKSLCYQNPAVIS 875
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICL--MTESSSLK 110
V V+ +L + L +NI A+ + + ++ ++ L + K
Sbjct: 876 KGVTIVVSPLLSLIQDQVEALVQLNIG-----AVFLSGSQTEAEQSRVYLELSRQDERCK 930
Query: 111 LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170
++Y++PEK++ S +++L +Y++ LAR IDE HC S WGHDFRPDY+ L +L F
Sbjct: 931 VVYMTPEKISHSTRLLSQLDMLYQSKRLARFVIDEAHCVSQWGHDFRPDYKQLRMLHDRF 990
Query: 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA 230
P VP++ LTATAT +V D+ K L I + FNR NL Y+V K K LD++A
Sbjct: 991 PTVPVMALTATATERVRSDIMKQLNIHQAEIFVQSFNRENLRYQVYKK---DKTTLDDIA 1047
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN-------------- 276
++ +++ SGI+Y S K+CE + EL RG+ + YHA ++
Sbjct: 1048 RMIKKQWPKDSGIVYCLSRKDCETVARELVQRGIAATFYHAGMDPGDRAVVQRDWIGNRK 1107
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
+IAFG+GI+KP+VR+V H+ L KS+E +YQ S
Sbjct: 1108 QVIVATIAFGMGINKPDVRYVFHYSLPKSLEGYYQES 1144
Score = 43.9 bits (102), Expect = 0.11, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 47 TDYPWSDRVRSVLKSKFNLTD-FRPNQLAAINIALLKKDAIIIMPTG 92
TDYPWS V+ ++ F L FR +QL IN + + +++MPTG
Sbjct: 815 TDYPWSGDVQKAMRKVFGLNKGFRTHQLEVINCTMSGRHCLVLMPTG 861
>gi|398016123|ref|XP_003861250.1| ATP-dependent DEAD/H DNA helicase recQ, putative [Leishmania
donovani]
gi|322499475|emb|CBZ34548.1| ATP-dependent DEAD/H DNA helicase recQ, putative [Leishmania
donovani]
Length = 1946
Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats.
Identities = 118/331 (35%), Positives = 175/331 (52%), Gaps = 28/331 (8%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
+PWS +R +++ F L D+R QL +N + +D +++PT S ++ +++ +
Sbjct: 505 FPWSAELRRMMREVFGLHDYRFCQLEIMNACMDGRDVFVLLPTGGGKSLCYQLPALMPNP 564
Query: 63 FNLTDFRPNQLAAIN---IALLKKDAIIIMPTGKLLKKKKICLMTESSS----LKLLYVS 115
+T ++ I AL+ D + TG+ + L E +S L+YV+
Sbjct: 565 AQVTVVVSPLISLIQDQVYALIANDIPAMALTGQTNDAARRSLFQEWASGHVVHTLVYVT 624
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE +S F+ LQ + G L R IDE HC S WGHDFRPDY+ LS+LK FP PI
Sbjct: 625 PEYFGRSDHFVGTLQGLADKGLLCRFVIDEAHCVSQWGHDFRPDYRKLSVLKRQFPRTPI 684
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
LTATAT V DV K L + D ++ K FNR NL Y V + K + + DL+
Sbjct: 685 TALTATATDLVQQDVIKTLALRDAIIFKGSFNRANLKYSV--QHVRGKQVIPVVEDLVLH 742
Query: 236 RFRNQS-GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------VS 278
RF S GI+Y S K+CE++ L RG++ S YH++ S +
Sbjct: 743 RFSPSSCGIVYCLSRKDCEEMAAALVRRGIKASYYHSEAASKNERQERWTRDELQVICAT 802
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
IAFG+GI+KP+VR+V+H + KS+E +YQ S
Sbjct: 803 IAFGMGINKPDVRYVVHAAMPKSIEGYYQES 833
>gi|146088064|ref|XP_001465982.1| putative ATP-dependent DEAD/H DNA helicase recQ [Leishmania
infantum JPCM5]
gi|134070083|emb|CAM68416.1| putative ATP-dependent DEAD/H DNA helicase recQ [Leishmania
infantum JPCM5]
Length = 1946
Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats.
Identities = 118/331 (35%), Positives = 175/331 (52%), Gaps = 28/331 (8%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
+PWS +R +++ F L D+R QL +N + +D +++PT S ++ +++ +
Sbjct: 505 FPWSAELRRMMREVFGLHDYRFCQLEIMNACMDGRDVFVLLPTGGGKSLCYQLPALMPNP 564
Query: 63 FNLTDFRPNQLAAIN---IALLKKDAIIIMPTGKLLKKKKICLMTESSS----LKLLYVS 115
+T ++ I AL+ D + TG+ + L E +S L+YV+
Sbjct: 565 AQVTVVVSPLISLIQDQVYALIANDIPAMALTGQTNDAARRSLFQEWASGHVVHTLVYVT 624
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE +S F+ LQ + G L R IDE HC S WGHDFRPDY+ LS+LK FP PI
Sbjct: 625 PEYFGRSDHFVGTLQGLADKGLLCRFVIDEAHCVSQWGHDFRPDYRKLSVLKRQFPRTPI 684
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
LTATAT V DV K L + D ++ K FNR NL Y V + K + + DL+
Sbjct: 685 TALTATATDLVQQDVIKTLALRDAIIFKGSFNRANLKYSV--QHVRGKQVIPVVEDLVLH 742
Query: 236 RFRNQS-GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------VS 278
RF S GI+Y S K+CE++ L RG++ S YH++ S +
Sbjct: 743 RFSPSSCGIVYCLSRKDCEEMAAALVRRGIKASYYHSEAASKNERQERWTRDELQVICAT 802
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
IAFG+GI+KP+VR+V+H + KS+E +YQ S
Sbjct: 803 IAFGMGINKPDVRYVVHAAMPKSIEGYYQES 833
>gi|149239801|ref|XP_001525776.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449899|gb|EDK44155.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1317
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 121/335 (36%), Positives = 173/335 (51%), Gaps = 36/335 (10%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRSVLKSK 62
D + + L + F L FRPNQL A+ LL KD ++MPT Y ++ KS+
Sbjct: 787 DEIYTTLNNTFKLQAFRPNQLEAVVATLLNKDTFVLMPTGGGKSLCYQLPALIKGA-KSQ 845
Query: 63 FNLTDFRP------NQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSP 116
P +Q+ + IA K +I K + L E L ++Y+SP
Sbjct: 846 GTTIVISPLISLMHDQVQHL-IARDIKAGMISSRASSEDNKHTLNLFRE-GFLDIVYLSP 903
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK KS + K+Y+ LAR+ IDE HC SSWGHDFRPDY+ +S K FP VP++
Sbjct: 904 EKANKSSMIQRIISKLYERNQLARVVIDEAHCLSSWGHDFRPDYKGMSFFKENFPSVPVM 963
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATA KV +D+ L++ V +K FNR NL YE++ K +KD L+++ + R
Sbjct: 964 ALTATANEKVRMDIIHNLKLNSPVFLKQSFNRTNLLYEIKWK---KKDYLEDIKTYIMTR 1020
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
F +GI++ S + CED +L GL YHA + + +
Sbjct: 1021 FPRSTGILFCNSKQACEDTSSKLNELGLSTGFYHAGMSTEDRFQAQHLWQTGKTRIICAT 1080
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
IAFG+GIDKP+VRFVIH + +S+E +YQ + G
Sbjct: 1081 IAFGMGIDKPDVRFVIHLFIPRSLEGYYQETGRAG 1115
>gi|357445423|ref|XP_003592989.1| ATP-dependent DNA helicase Q1 [Medicago truncatula]
gi|355482037|gb|AES63240.1| ATP-dependent DNA helicase Q1 [Medicago truncatula]
Length = 1156
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 175/334 (52%), Gaps = 38/334 (11%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
++ W+ + K F FRPNQ IN + D ++MPT S
Sbjct: 389 DFSWTKELEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALINP 448
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC--LMTESSSLKL 111
+ V+ +L + L NI A + + ++++I L ++ KL
Sbjct: 449 GITLVISPLVSLIQDQIMHLLQANIP-----AAYLSANLEWAEQQEILRELNSDYCKYKL 503
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEK+A+S + +L+ ++ L+RI IDE HC S WGHDFRPDYQ L +LK FP
Sbjct: 504 LYVTPEKVARSDVLLRQLESLHGRELLSRIVIDEAHCVSQWGHDFRPDYQGLGVLKQKFP 563
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
+ P+L LTATAT V DV + L + +CVV + FNRPNL+Y V K K CL+++
Sbjct: 564 NTPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPK---TKKCLEDIDK 620
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--------------- 276
+ ++ GIIY S +CE + E+L+ G + + YH ++ +
Sbjct: 621 FIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPDQRAHVQRQWSKDEIN 680
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KP+VRFVIHH L KS+E ++Q
Sbjct: 681 IICATVAFGMGINKPDVRFVIHHSLPKSVEGYHQ 714
>gi|401422966|ref|XP_003875970.1| putative ATP-dependent DEAD/H DNA helicase recQ [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322492210|emb|CBZ27484.1| putative ATP-dependent DEAD/H DNA helicase recQ [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 1687
Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats.
Identities = 117/331 (35%), Positives = 175/331 (52%), Gaps = 28/331 (8%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
+PWS +R +++ F L D+R QL +N + +D +++PT S ++ +++ +
Sbjct: 254 FPWSTELRRMMREVFGLHDYRFCQLEIMNACMDGRDVFVLLPTGGGKSLCYQLPALMPNP 313
Query: 63 FNLTDFRPNQLAAIN---IALLKKDAIIIMPTGKLLKKKKICLMTESS----SLKLLYVS 115
+T ++ I AL+ D + TG+ + L E + L+YV+
Sbjct: 314 AQVTVVVSPLISLIQDQVYALIANDIPAMALTGQTNDAARRSLFQEWAFGHVVHTLVYVT 373
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE +S F+ LQ + G L+R IDE HC S WGHDFRPDY+ LS+LK FP PI
Sbjct: 374 PEYFGRSDHFVGTLQGLADKGLLSRFVIDEAHCVSQWGHDFRPDYRKLSVLKRQFPRTPI 433
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
LTATAT V DV K L + D ++ K FNR NL Y V + K + + DL+
Sbjct: 434 TALTATATDLVQQDVIKTLALRDAIIFKGSFNRANLKYSV--QHVRGKQVIPVVEDLVLH 491
Query: 236 RFRNQS-GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------VS 278
RF S GI+Y S K+CE++ L RG++ S YH++ S +
Sbjct: 492 RFSPSSCGIVYCLSRKDCEEMAAALVRRGIKASYYHSEAASKNERQERWTRDELQVICAT 551
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
IAFG+GI+KP+VR+V+H + KS+E +YQ S
Sbjct: 552 IAFGMGINKPDVRYVVHAAMPKSIEGYYQES 582
>gi|429961617|gb|ELA41162.1| RecQ family ATP-dependent DNA helicase [Vittaforma corneae ATCC
50505]
Length = 733
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 125/323 (38%), Positives = 163/323 (50%), Gaps = 72/323 (22%)
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG-------------------------- 92
L++ FNL +FR NQ I AL K+D ++MPTG
Sbjct: 163 LRNVFNLENFRGNQEEIIKAALNKEDIFVLMPTGGGKSLCYQLPAMIQDGLTVVISPLLS 222
Query: 93 -------KLLKKK-------KICLMTESS----------SLKLLYVSPEKLAKSKSFMTK 128
LL K C +E + S+K++YV+PE L KS F
Sbjct: 223 LIHDQVSNLLNKNIPAVALNSNCTYSERTLIMKTLQACHSVKIVYVTPELLNKSTQFSNI 282
Query: 129 LQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVML 188
L ++ + G L R IDE HC S WGHDFRPDY+ L I+K FP +P++ LTATAT KV L
Sbjct: 283 LHELDRRGRLCRFVIDEAHCVSQWGHDFRPDYKELGIIKRKFPRIPLIALTATATKKVEL 342
Query: 189 DVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTS 248
DV L IE C V + FNRPNL Y V K K L ++ + + N GIIY TS
Sbjct: 343 DVLNSLGIEGCKVFRQSFNRPNLKYYVMSKT---KKSLTDIVSFVHTYYPNSPGIIYCTS 399
Query: 249 IKECEDLREELRNRGLRVSAYHAKL---ESN---------------VSIAFGLGIDKPNV 290
K+CE++ E+L N L+ + YHA L E N +IAFG+GIDK +V
Sbjct: 400 KKDCEEMSEKL-NEHLKTTFYHAGLSKRERNKVQEMWNDGTIKIIVATIAFGMGIDKSDV 458
Query: 291 RFVIHHCLSKSMENFYQVSIAFG 313
RFVIH+ L KS+E +YQ + G
Sbjct: 459 RFVIHYSLPKSLEGYYQETGRAG 481
>gi|166240658|ref|XP_645178.2| ATP-dependent DNA helicase RecQ family protein [Dictyostelium
discoideum AX4]
gi|165988694|gb|EAL71344.2| ATP-dependent DNA helicase RecQ family protein [Dictyostelium
discoideum AX4]
Length = 973
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 117/345 (33%), Positives = 185/345 (53%), Gaps = 39/345 (11%)
Query: 7 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS-----------DRV 55
W + V + + F +FR Q+ AIN L +D + +PT S V
Sbjct: 462 WHELVETCNRDIFGNKEFRNLQIEAINSILHDRDTFVSLPTGGGKSLCFQIPSIVDHRGV 521
Query: 56 RSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC---LMTESSSLKLL 112
V+ L + ++L ++ I A I +G + + + L E+ LKL+
Sbjct: 522 TFVISPLLALMQDQVHKLKSLGIP-----AESINSSGSQRENRDVLDQLLNGETCKLKLI 576
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
Y++PE+LA+S+ F+ L ++Y G L R+ +DE HC S WGH FRP Y+ +S + FP
Sbjct: 577 YITPERLAQSE-FLHLLDQLYDQGRLRRLVVDEAHCISEWGHSFRPKYRLISTFRDRFPS 635
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
VPI TA+AT V +D++ L++ + + I + F RPNL Y+VR K + ++ L ++ +
Sbjct: 636 VPISAFTASATPNVEIDIKNSLKMVNPITINSSFLRPNLLYQVRQKQSDEESLLKDIYNF 695
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
+S ++ N +GIIY +++ECE + + L RGL + YHAKL +
Sbjct: 696 ISFKYPNSTGIIYCATVRECEIVADYLSERGLSSNFYHAKLSNTQRSKLQKDWTNGEFKI 755
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDK + RFVIHH + +SME++YQ + G GKHS
Sbjct: 756 VCTTIAFGMGIDKGDTRFVIHHSMPQSMESYYQQTGRAGRDGKHS 800
>gi|356533550|ref|XP_003535326.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q-like
1-like [Glycine max]
Length = 612
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 128/329 (38%), Positives = 180/329 (54%), Gaps = 44/329 (13%)
Query: 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINI 78
F FRP Q A AL K+D+ I+MPT S L + T +P ++
Sbjct: 206 FGNRTFRPLQHQACKAALAKQDSFILMPTGGGKS------LCYQLPAT-LQPGVTVVVSP 258
Query: 79 AL-LKKDAIIIM------PTGKLLKKKKICLMT--------ESSSLKLLYVSPEKLAKSK 123
L L +D II + P+ L ++ +T + S KLLYV+PE++A ++
Sbjct: 259 LLSLIQDQIITLNLKFGIPSTFLNSQQTASQVTAVLQELRKDKPSCKLLYVTPERIAGNQ 318
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
SF+ L+ M++ G LA +DE HC S WGHDFRPDY+ L LK FPDVP++ LTATAT
Sbjct: 319 SFLEILKFMHQKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKLHFPDVPVMALTATAT 378
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
V D+ K L+I +V++ F+RPNL YEV K K+ L +L L+ RFRNQ GI
Sbjct: 379 HAVREDILKALRIPHALVLERSFDRPNLKYEVIAKT---KEPLKQLGQLLIDRFRNQCGI 435
Query: 244 IYTTSIKECEDLREELRNR-GLRVSAYHAKLESN------------------VSIAFGLG 284
+Y S EC ++ + L + ++ YHA L + +IAFG+G
Sbjct: 436 VYCLSKSECVEVSKFLNEKCKIKTVYYHAGLAARQRVAVQKKWYDGEVHIVCATIAFGMG 495
Query: 285 IDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
IDKP+VRFVIH+ +SKS+E++YQ S G
Sbjct: 496 IDKPDVRFVIHNTMSKSIESYYQESGRAG 524
>gi|348506232|ref|XP_003440664.1| PREDICTED: Bloom syndrome protein homolog [Oreochromis niloticus]
Length = 1403
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 122/337 (36%), Positives = 173/337 (51%), Gaps = 30/337 (8%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKF 63
N+P S + + +F L FR NQL AIN ALL +DA ++MPT S +
Sbjct: 639 NFPHSQEMMKIFHKRFGLHQFRFNQLEAINAALLGEDAFVLMPTGGGKSLCYQLPACVSL 698
Query: 64 NLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKK--------ICLMTESSSLKLLYVS 115
+T + L ++ + ++K + +P L K + L + +KLLYV+
Sbjct: 699 GVT-VVVSPLKSLIVDQVQKLTTLDIPATSLSGDKSDSEASRIYMQLSRKDPIIKLLYVT 757
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PEKL+ S ++ LQ +Y+ G LAR IDE HC S WGHDFRPDY+ L L+ FP+V +
Sbjct: 758 PEKLSASNRLISALQNLYERGLLARFIIDEAHCVSQWGHDFRPDYKKLHELRQKFPNVAM 817
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATAT +V D+ L + V FNR NL Y V P K ++ + +
Sbjct: 818 MALTATATPRVQKDILNQLNMSRPQVFTMSFNRTNLKYAVL--PKKPKKVDEDCTSWIKK 875
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------- 276
+ SGI+Y S +C+ + E L+ GL +YHA L +
Sbjct: 876 HYPRDSGIVYCLSRNDCDAMAESLQRAGLSALSYHAGLSDSDREYVQSKWINQDGCQVIC 935
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VR+VIH L KSME +YQ S G
Sbjct: 936 ATIAFGMGIDKPDVRYVIHASLPKSMEGYYQESGRAG 972
>gi|307103815|gb|EFN52072.1| hypothetical protein CHLNCDRAFT_36987 [Chlorella variabilis]
Length = 589
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 120/333 (36%), Positives = 166/333 (49%), Gaps = 75/333 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----------LLKKK 98
+ WSD +R + F DFR NQL +N L KD ++MPTG LL K
Sbjct: 26 FAWSDELRVRNREAFGNRDFRHNQLGIMNSTLSNKDVFVLMPTGGGKSLCYQLPALLSKG 85
Query: 99 KICLMTESSSL-----------------------------------------KLLYVSPE 117
+++ SL ++L+++PE
Sbjct: 86 VTIVVSPLVSLIQDQVHHLTVLGIPAAFVGGSMDWKQQARPADFFSAVLRCWQVLFITPE 145
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
KL+ S + L +++ G LAR+ IDE HC S WGHDFR DY LS+ K FP VP+L
Sbjct: 146 KLSASGKLQSTLDSLHRRGLLARVVIDEAHCVSQWGHDFRKDYTRLSLFKQRFPSVPLLA 205
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT +V DV L I C+V K FNRPNL YEVR K +K C+DE+A+L+ + F
Sbjct: 206 LTATATERVQHDVVAQLGINRCLVFKNSFNRPNLRYEVRRK---KKGCVDEMAELILQNF 262
Query: 238 RNQSGIIYTTSIKECEDLREELRNR---GLRVSAYHAKL-------------ESNV---- 277
+ GI+Y S ECE + ++L + + YHA L +V
Sbjct: 263 LKKCGIVYCLSRAECERVADDLEAKLADAIYPLHYHASLLPEEREAVQAEWTNGDVPIIV 322
Query: 278 -SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
+IAFG+GI+K +VRFV+H+ L KS+E + Q S
Sbjct: 323 ATIAFGMGINKCDVRFVLHYSLPKSLEGYLQAS 355
>gi|66802111|ref|XP_629849.1| ATP-dependent DNA helicase RecQ family protein [Dictyostelium
discoideum AX4]
gi|60463228|gb|EAL61421.1| ATP-dependent DNA helicase RecQ family protein [Dictyostelium
discoideum AX4]
Length = 1259
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 124/355 (34%), Positives = 175/355 (49%), Gaps = 68/355 (19%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKF 63
N+PWS ++ + +S F FR NQ IN L D ++MPT S
Sbjct: 507 NFPWSQKIIDINRSMFGFHVFRENQREIINSTLEGNDTFVLMPTGGGKS----------- 555
Query: 64 NLTDFRPNQLAAINIALLKKD-AIIIMPTGKLLKKKKICLMT------------------ 104
L AL +K I+I P L+ + L T
Sbjct: 556 ---------LCYQIPALYQKGLTIVISPLISLINDQVEFLETLGYPAAALSSAVSSDAAI 606
Query: 105 --------ESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDF 156
S ++LLY++PE++ KS S + L + + G +RI IDE HC S WGHDF
Sbjct: 607 DVYKDIRSNSPKIRLLYLTPERVVKSDSLIEILANLDQKGLFSRIVIDEAHCVSQWGHDF 666
Query: 157 RPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVR 216
RPDY+ LSIL+ FP VPIL LTATAT +V DV L + + V K FNRPNL Y+V
Sbjct: 667 RPDYKELSILRRKFPKVPILALTATATERVRNDVIYNLSMRNPVCFKQSFNRPNLIYQVL 726
Query: 217 IKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN 276
K K +D+++ + + ++SGI+Y S +CE++ + LR + + YHA LE++
Sbjct: 727 KK---TKQVVDDMSKFIHSTYPDKSGIVYCISKYDCENVAKRLRELKISAAHYHAGLEND 783
Query: 277 ------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GI+K +VRFVIHH + KS+E +YQ S G
Sbjct: 784 ERAKVQANWQKGRIKVIVATIAFGMGINKADVRFVIHHSVPKSLEGYYQESGRAG 838
>gi|190348308|gb|EDK40739.2| hypothetical protein PGUG_04837 [Meyerozyma guilliermondii ATCC
6260]
Length = 1176
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 182/385 (47%), Gaps = 83/385 (21%)
Query: 6 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAII------IMPTDYPWSDRVRSVL 59
P S V S L+S DF L AI ++ A + P P+ V S+L
Sbjct: 456 PVSSTVLSDLESDL---DFSDEDLCAIPDSIFPVPAAQATAGKKLPPGSEPFIKEVYSIL 512
Query: 60 KSKFNLTDFRPNQLAAINIALLKKDAIIIMPT---------------------------- 91
+S FNL+ FRPNQL A+ L KD ++MPT
Sbjct: 513 QSTFNLSSFRPNQLEAVTATLQGKDTFVLMPTGGGKSLCYQLPALVTSGRTRGTTIVISP 572
Query: 92 -------------------------GKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFM 126
G ++K+ + S L L+Y+SPE + S
Sbjct: 573 LISLMQDQVQHLLDKNIRAGMVSSKGTASERKQTVELFRSGQLDLVYLSPEMVNASSQIQ 632
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186
+ ++ LARI +DE HC SSWGHDFRPDY+ +++ K +P++P++ LTATA KV
Sbjct: 633 NIISRLNSNQQLARIVVDEAHCVSSWGHDFRPDYKGMNMFKQQYPNIPLMALTATANEKV 692
Query: 187 MLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYT 246
+D+ L + + V++K FNR NLFYE++ K + L+ + D + ++ + +GIIY
Sbjct: 693 RMDIIHHLNMTEPVLLKQSFNRTNLFYEIKRKNG---NYLEWIRDYIVAKYAHNTGIIYC 749
Query: 247 TSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDKP 288
S + CE E+L GL+ S YHA + +IAFG+GIDKP
Sbjct: 750 HSKQSCEQTSEKLNMWGLKTSFYHAGMGPTERFDIQKKWQDGSVKIICATIAFGMGIDKP 809
Query: 289 NVRFVIHHCLSKSMENFYQVSIAFG 313
+VRFVIH + +S+E +YQ + G
Sbjct: 810 DVRFVIHLFIPRSLEGYYQETGRAG 834
>gi|189527306|ref|XP_701357.3| PREDICTED: Bloom syndrome protein homolog, partial [Danio rerio]
Length = 1261
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 125/347 (36%), Positives = 176/347 (50%), Gaps = 50/347 (14%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------- 52
N+P S + + KF L FR NQL AIN +LL +D ++MPT S
Sbjct: 659 NFPHSPEMMKIFHKKFGLHQFRFNQLEAINASLLGEDTFVLMPTGGGKSLCYQLPACVSA 718
Query: 53 ------DRVRSVLKSKFN-LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE 105
+RS++ + LT + A +++ KKD+ +L +K
Sbjct: 719 GVTVVISPLRSLIVDQVQKLTTL---DICATSLSGDKKDSEAARIYMQLSRK-------- 767
Query: 106 SSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSI 165
++KLLY +PEK+ S ++ LQ +Y+ G LAR+ IDE HC S WGHDFRPDY+ L
Sbjct: 768 DPAIKLLYATPEKVCASGRMISALQNLYERGLLARLVIDEAHCVSQWGHDFRPDYKRLHE 827
Query: 166 LKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDC 225
L+ MFP+VPI+ LTATAT +V D+ L + V FNR NL Y V P K
Sbjct: 828 LRRMFPNVPIMALTATATPRVQKDILNQLAMTRPQVFTMSFNRNNLKYSVL--PKKPKKV 885
Query: 226 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--------- 276
+E + + + SGI+Y S +C+ L + L+ G+ AYHA L +
Sbjct: 886 DEECIQWIKKYYPRDSGIVYCLSRNDCDTLADSLQRAGIAALAYHAGLSDSDREYVQNKW 945
Query: 277 ----------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VR+VIH L KS+E +YQ S G
Sbjct: 946 INQDGCQVMCATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAG 992
>gi|399215939|emb|CCF72627.1| unnamed protein product [Babesia microti strain RI]
Length = 706
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 116/333 (34%), Positives = 177/333 (53%), Gaps = 36/333 (10%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSD 53
++ WS+ ++ + FN T FRP QL IN + D ++PT +SD
Sbjct: 158 DFDWSNEIKRINSEVFNNTGFRPMQLEIINSVISGNDTFALVPTGGGKTLCYQLPAIYSD 217
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKICLMTESSSLKLL 112
+ V+ +L + +L +NI+ PT + ++ I ++ +K+L
Sbjct: 218 GITLVISPLISLIQDQVQRLEFLNISCAS------FPTEQEYFERLSIIEKLRNAEIKVL 271
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
+V+PEK+ SK F + L ++Y L R IDE HC S WG DFRPDY L +L+ +PD
Sbjct: 272 FVTPEKIVSSKWFQSVLDELYSKELLVRFVIDEAHCISHWGSDFRPDYASLGVLRKCYPD 331
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
VPIL LTATAT+ V D+ +++++ +C FNRPNL ++V K K ++EL
Sbjct: 332 VPILLLTATATSNVFDDLIRIMRLRNCQAFSCNFNRPNLKFKVVPKSRNTKLAIEELIGY 391
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES---------------NV 277
+ R + SGI+Y S ++CE + EL G+ YHA+L+ NV
Sbjct: 392 V-REYPTSSGIVYCLSCQDCEFVSSELVKSGINSMHYHAQLDQLTRKHVQQSWMEGSINV 450
Query: 278 ---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GIDK NVRFVIH + KS+EN++Q
Sbjct: 451 VVATLAFGMGIDKSNVRFVIHFSMPKSIENYFQ 483
>gi|357137820|ref|XP_003570497.1| PREDICTED: ATP-dependent DNA helicase Q-like 3-like [Brachypodium
distachyon]
Length = 777
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 127/339 (37%), Positives = 178/339 (52%), Gaps = 34/339 (10%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLT-- 66
+ +VLK F + FR QL AI L +D +MPT S ++ +++K+ L
Sbjct: 24 LENVLKQYFGYSGFRGRQLEAIEAVLSGRDCFCLMPTGGGKSMCYQIPALVKAGIVLVIS 83
Query: 67 ---DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSK 123
NQ+ ++ + + + T K + L + + SLKLLYV+PE L +
Sbjct: 84 PLIALMENQVTSLKSKGVPAEFLSSTQTAKNKNEIYEDLDSGNPSLKLLYVTPE-LVATF 142
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
F KL K+Y G L +AIDE HC S+WGHDFRP Y+ +S L+ FPD+PIL LTATA
Sbjct: 143 GFKAKLTKLYSRGLLGLVAIDEAHCISTWGHDFRPSYRKISSLRKQFPDIPILALTATAV 202
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFR---NQ 240
KV DV L +++ V+++A FNRPN+FYEVR KD LD++ +S + N
Sbjct: 203 PKVQKDVISSLCLQNPVILRASFNRPNIFYEVRY-----KDLLDDVYSDISNLLKSSGNV 257
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282
IIY C+DL L +G+ + YHA L S V ++AFG
Sbjct: 258 CSIIYCLERAACDDLNMHLSQQGISSAVYHAGLNSKVRSAVLDDWLSSRTQVVVATVAFG 317
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRS 321
+GID+ +VR V H L KSME+FYQ S G + RS
Sbjct: 318 MGIDRQDVRIVCHFNLPKSMESFYQESGRAGRDQQPSRS 356
>gi|307183296|gb|EFN70165.1| Bloom syndrome protein-like protein [Camponotus floridanus]
Length = 1313
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 122/356 (34%), Positives = 170/356 (47%), Gaps = 71/356 (19%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD------------------------ 40
Y S + + + +F L FRPNQL AIN LL D
Sbjct: 616 YSHSQEMLKIFRQRFGLYTFRPNQLQAINATLLGFDCFVLMPTGGGKSLCYQLPALLSVG 675
Query: 41 -AIIIMPTDYPWSDRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLL 95
I+I P D+V+ + + + + NQ A+ L KK+ I
Sbjct: 676 LTIVISPLKSLILDQVQKLTSLDIPAAHLSSSITDNQAEAVYRELAKKEPI--------- 726
Query: 96 KKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHD 155
LK+LYV+PEK++ S L +Y+ LAR IDE HC S WGHD
Sbjct: 727 -------------LKILYVTPEKISASTKLCNTLTILYERELLARFVIDEAHCVSQWGHD 773
Query: 156 FRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV 215
FRPDY+ L L+ +P VP + LTATAT +V D+ L + + + FNRPNL Y +
Sbjct: 774 FRPDYKRLKCLRDNYPKVPTMALTATATPRVRTDILHQLGMTNPKWFMSGFNRPNLRYSI 833
Query: 216 RIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES 275
K K+C DE+ ++ ++RN GI+Y S K+C+D +++ G++ +YHA L
Sbjct: 834 ITKKG--KNCSDEVIAMIMTKYRNTCGIVYCLSRKDCDDYAAQMKKNGIKALSYHAGLTD 891
Query: 276 N------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
N +IAFG+GIDKPNVRFVIH L KS+E +YQ S G
Sbjct: 892 NQRSNCQGRWIADEIHVICATIAFGMGIDKPNVRFVIHAALPKSIEGYYQESGRAG 947
>gi|393247277|gb|EJD54785.1| ATP-dependent DNA helicase [Auricularia delicata TFB-10046 SS5]
Length = 819
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 125/359 (34%), Positives = 182/359 (50%), Gaps = 55/359 (15%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKF 63
+Y W+ +++ ++ F + DFR Q N + ++D + IMPT S + L S F
Sbjct: 96 DYEWTPDMKARMQRVFGIQDFRLCQQGVCNANMDRRDIVCIMPTGGGKS--LTYQLPSLF 153
Query: 64 N---------LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLM----------- 103
+ L +Q+ + A ++ +M TG K+ +M
Sbjct: 154 SPGCTVVISPLISLITDQILHLREAGVEA----VMLTGATRKEDTRSIMNRLISYDPSAQ 209
Query: 104 TESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL 163
+ +KL YV+PEK+AKSK+F++ L+K+ G LAR+ IDE HC S GHDFRPDY+ L
Sbjct: 210 SGEKEIKLCYVTPEKVAKSKTFVSMLEKLANKGRLARLVIDEAHCVSQLGHDFRPDYKKL 269
Query: 164 SILKTMFPDVPILGLTATATTKVMLDVQKMLQI-----------EDCVVIKAPFNRPNLF 212
SIL+ +FP VPI+ L+AT +V+ DV K+L++ V AP RPNL
Sbjct: 270 SILRQLFPRVPIMALSATCPPQVLDDVLKILRLPPVTDGSAANTAGTVYFSAPLYRPNLH 329
Query: 213 YEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
Y V KP+ L +AD + SGI+Y S K+ E + L+ RG+R YHA
Sbjct: 330 YSVLPKPSGAVAALTTMADYILASHAEDSGIVYCLSKKDTESVAMGLQERGIRSGIYHAD 389
Query: 273 LESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+ +IAFGLGIDK +VRFV+HH +SKS+E +YQ S G
Sbjct: 390 IGDEEKERLHVRWRKGQVKVVCATIAFGLGIDKGDVRFVLHHTMSKSLEGYYQESGRAG 448
>gi|389601408|ref|XP_001565398.2| putative ATP-dependent DEAD/H DNA helicase recQ [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|322505030|emb|CAM42308.2| putative ATP-dependent DEAD/H DNA helicase recQ [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 2031
Score = 196 bits (499), Expect = 9e-48, Method: Composition-based stats.
Identities = 116/331 (35%), Positives = 175/331 (52%), Gaps = 28/331 (8%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
+PWS +R +++ F L D+R QL +N + +D +++PT S ++ +++ +
Sbjct: 520 FPWSTELRRMMREVFGLHDYRFCQLEIMNACMDGRDVFVLLPTGGGKSLCYQLPALMPNP 579
Query: 63 FNLTDFRPNQLAAIN---IALLKKDAIIIMPTGKLLKKKKICLMTESSS----LKLLYVS 115
+T ++ I AL+ D + TG+ + L E +S L+YV+
Sbjct: 580 AQVTVVVSPLISLIQDQVYALIANDIPAMALTGQTNDAARRSLFQEWASGHVVHTLVYVT 639
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE +S F+ LQ + G L R IDE HC S WGHDFRPDY+ LS+LK FP PI
Sbjct: 640 PEYFGRSDHFVGTLQGLTDKGLLCRFVIDEAHCVSQWGHDFRPDYRKLSVLKRQFPRTPI 699
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
LTATAT V DV K L + + ++ K FNR NL Y V + K + + DL+
Sbjct: 700 TALTATATDVVQQDVIKTLALRNAIIFKGSFNRANLKYSV--QHVRGKQVVSVVEDLILH 757
Query: 236 RFR-NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------VS 278
RF + GI+Y S K+CE++ L RG++ S YH++ S +
Sbjct: 758 RFSPSWCGIVYCLSRKDCEEMAAALVRRGIKASYYHSEAASKNERQERWTRDELQVICAT 817
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
IAFG+GI+KP+VR+V+H + KS+E +YQ S
Sbjct: 818 IAFGMGINKPDVRYVVHAAMPKSIEGYYQES 848
>gi|356528815|ref|XP_003532993.1| PREDICTED: ATP-dependent DNA helicase Q-like 4A-like [Glycine max]
Length = 1160
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 164/329 (49%), Gaps = 72/329 (21%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLLKKKKICLMTE 105
D+PW+ + K F FRPNQ IN ++ D ++MPT GK L + L+
Sbjct: 391 DFPWTKELEVNNKKVFGNHSFRPNQREIINASMSGCDVFVLMPTGGGKSLTYQLPALIRP 450
Query: 106 SSSL-------------------------------------------------KLLYVSP 116
+L KLLYV+P
Sbjct: 451 GITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWAEQQEILRELNSDYCKYKLLYVTP 510
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+A+S + + L ++ LARI IDE HC S WGHDFRPDYQ L ILK FP+ P+L
Sbjct: 511 EKVARSDNLLRHLDNLHFRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVL 570
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATAT V DV + L + +C++ + FNRPNL+Y V K K CL+++ +
Sbjct: 571 ALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWYSVVPK---TKKCLEDIDKFIRVN 627
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL---------------ESNV---S 278
++ GIIY S +CE + E+L+ G + + YH + E N+ +
Sbjct: 628 HFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPAQRASVQKQWSKDEINIICAT 687
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+AFG+GI+KP+VRFVIHH L KS+E ++Q
Sbjct: 688 VAFGMGINKPDVRFVIHHSLPKSIEGYHQ 716
>gi|428173190|gb|EKX42094.1| BLM RecQ DNA helicase family member, partial [Guillardia theta
CCMP2712]
Length = 412
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 116/339 (34%), Positives = 174/339 (51%), Gaps = 35/339 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSDR 54
+ W++++R + K F FR +Q IN L D ++MPT S
Sbjct: 3 FDWTEKLRKINKHVFRNPSFRKHQEEIINTILSGHDCFVLMPTGGGKSLCYQLPALMSPG 62
Query: 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICL--MTESSSLKLL 112
V V+ L +Q+ +N+ + I L++ CL + E + +L+
Sbjct: 63 VTIVISP---LVSLMHDQVYNLNLLRIGAYCISANTPMSELEEMYSCLRGVKEGINCQLI 119
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
Y++PEK A S+ ++Q+ ++ G L+RI IDE HC S WGHDFRPDY+ L LK+ P
Sbjct: 120 YITPEKFAHSQRLQNEMQRSFQNGKLSRIIIDEAHCVSEWGHDFRPDYKMLGALKSKLPG 179
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
V I+ LTATAT +V D++ +LQI + FNRPNL YEVR K +K + +A
Sbjct: 180 VQIMALTATATPRVRRDIRNILQINEAYTFMQSFNRPNLRYEVRKK--EKKKSAENIATF 237
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------- 277
+ + ++GIIY S CE++ +++ ++ YHA L+
Sbjct: 238 IKENYPGETGIIYCLSKNRCEEMAAKMQEFKIKALPYHAGLDDQTRKFNQDQWSNDKTHV 297
Query: 278 ---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GI+KP+VRFVIH L KSME +YQ S G
Sbjct: 298 IVATIAFGMGINKPDVRFVIHESLPKSMEGYYQESGRAG 336
>gi|270010585|gb|EFA07033.1| hypothetical protein TcasGA2_TC010005 [Tribolium castaneum]
Length = 1017
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/352 (36%), Positives = 179/352 (50%), Gaps = 63/352 (17%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD------------------------ 40
YP ++ + VL KF L FRP+Q IN +L ++D
Sbjct: 278 YPHTEVMYEVLHQKFGLRHFRPHQEEIINASLTQQDCFVLMPTGGGKSLCYQLPAVLMPG 337
Query: 41 -AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKK 99
I+I P SD+V K N D L + + K D +I KL ++
Sbjct: 338 VTIVISPLRALISDQV-----DKLNALDIPSAHLCS---DVKKADVDVIFQ--KLHVREP 387
Query: 100 ICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPD 159
I LKLLY++PEK++ S ++ +Y LAR IDEVHC S WGHDFRPD
Sbjct: 388 I--------LKLLYLTPEKMSASGKVTDMIKSLYARNKLARFVIDEVHCLSQWGHDFRPD 439
Query: 160 YQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKP 219
Y+ LS L+ +P+VPI+ LTATAT +V DV +L +++ FNRPN+ Y R+ P
Sbjct: 440 YKQLSNLRKQYPEVPIICLTATATKQVQGDVTNILGLKNPKTFIRSFNRPNIKY--RVIP 497
Query: 220 AAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-- 277
++E+ L+ +RF +SGIIY +CE L E+L G++ AYHA + ++
Sbjct: 498 KNGIKVVEEITKLIKQRFYRKSGIIYCLCRADCEKLAEDLCKLGIKAKAYHAGMSDSIRE 557
Query: 278 ----------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH+ + KS+E FYQ S G
Sbjct: 558 KQQREWMQDQFHVIVATIAFGMGIDKPDVRFVIHNSMPKSVEAFYQESGRAG 609
>gi|195157038|ref|XP_002019403.1| GL12253 [Drosophila persimilis]
gi|194115994|gb|EDW38037.1| GL12253 [Drosophila persimilis]
Length = 1349
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 166/337 (49%), Gaps = 77/337 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC-----LM 103
+ S R+ L F L FRPNQL IN LL+ D ++MPTG K +C ++
Sbjct: 571 FEHSTRLMHGLSYSFGLKSFRPNQLQVINATLLRNDCFVLMPTGG---GKSLCYQLPAIL 627
Query: 104 TESSSL-------------------------------------------------KLLYV 114
TE ++ KLLYV
Sbjct: 628 TEGVTIVISPLKSLIFDQINKLASLDICSKSLSGDVAMADVMAIYRDLESHPPMVKLLYV 687
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PEK++ S F L + ++R IDE HC S WGHDFRPDY+ L ILK FP+VP
Sbjct: 688 TPEKISSSARFQDILDTLNANNYISRFVIDEAHCVSQWGHDFRPDYKKLGILKKRFPNVP 747
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
+ LTATAT +V LD+ L +++C + FNR NL Y+V K A +D+++ +
Sbjct: 748 TIALTATATPRVRLDILSQLNLKNCKWFLSSFNRSNLRYKVLPKKGAS--TIDDMSAYIR 805
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------ 276
+ N SGIIY S KEC+++ +++ G+R AYHA L +
Sbjct: 806 TKPPNSSGIIYCLSRKECDEVAKKMCKDGVRAVAYHAGLTDSEREGRQKDWLTNKIRVIC 865
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFV+H+ L KS+E +YQ + G
Sbjct: 866 ATIAFGMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAG 902
>gi|195054415|ref|XP_001994120.1| GH17364 [Drosophila grimshawi]
gi|193895990|gb|EDV94856.1| GH17364 [Drosophila grimshawi]
Length = 1404
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/334 (35%), Positives = 157/334 (47%), Gaps = 71/334 (21%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---------------- 92
+ S R+ L F L FRPNQL IN ALL D ++MPTG
Sbjct: 625 FEHSTRLMQALSFSFGLKSFRPNQLQVINAALLGNDCFVLMPTGGGKSLCYQLPAILTEG 684
Query: 93 ----------------KLLKKKKIC-------------------LMTESSSLKLLYVSPE 117
L IC L S +KLLYV+PE
Sbjct: 685 VTIVISPLKSLIFDQVSKLASLDICAKSMSGEQSMEDTMAIYRDLEGHSPLVKLLYVTPE 744
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
K++ S F L + ++R IDE HC S WGHDFRPDY+ L IL+ FP+VP +
Sbjct: 745 KISSSARFQDTLDHLSANNFISRFVIDEAHCVSQWGHDFRPDYKKLGILRKRFPNVPTMA 804
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT +V D+ + L + C + FNR NL ++V K A LDE+ + R
Sbjct: 805 LTATATPRVRQDILQQLNLTHCKWFLSSFNRSNLRFQVLPKKGAS--TLDEMRSFIQTRP 862
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSI 279
SGIIY S KEC+++ ++ G+R AYHA L +I
Sbjct: 863 ITASGIIYCLSRKECDEVAHKMSAAGIRAVAYHAGLTDTARESRQKDWITNKVRVICATI 922
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
AFG+GIDKP+VRFV+H+ L KS+E +YQ + G
Sbjct: 923 AFGMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAG 956
>gi|198454689|ref|XP_001359676.2| GA19957 [Drosophila pseudoobscura pseudoobscura]
gi|198132910|gb|EAL28826.2| GA19957 [Drosophila pseudoobscura pseudoobscura]
Length = 1349
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 166/337 (49%), Gaps = 77/337 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC-----LM 103
+ S R+ L F L FRPNQL IN LL+ D ++MPTG K +C ++
Sbjct: 571 FEHSTRLMHGLSYSFGLKSFRPNQLQVINATLLRNDCFVLMPTGG---GKSLCYQLPAIL 627
Query: 104 TESSSL-------------------------------------------------KLLYV 114
TE ++ KLLYV
Sbjct: 628 TEGVTIVISPLKSLIFDQINKLASLDICSKSLSGDVAMADVMAIYRDLESHPPMVKLLYV 687
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PEK++ S F L + ++R IDE HC S WGHDFRPDY+ L ILK FP+VP
Sbjct: 688 TPEKISSSARFQDILDTLNANNYISRFVIDEAHCVSQWGHDFRPDYKKLGILKKRFPNVP 747
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
+ LTATAT +V LD+ L +++C + FNR NL Y+V K A +D+++ +
Sbjct: 748 TIALTATATPRVRLDILSQLNLKNCKWFLSSFNRSNLRYKVLPKKGAS--TIDDMSAYIR 805
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------ 276
+ N SGIIY S KEC+++ +++ G+R AYHA L +
Sbjct: 806 TKPPNSSGIIYCLSRKECDEVAKKMCKDGVRAVAYHAGLTDSEREGRQKDWLTNKIRVIC 865
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFV+H+ L KS+E +YQ + G
Sbjct: 866 ATIAFGMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAG 902
>gi|242063976|ref|XP_002453277.1| hypothetical protein SORBIDRAFT_04g003070 [Sorghum bicolor]
gi|241933108|gb|EES06253.1| hypothetical protein SORBIDRAFT_04g003070 [Sorghum bicolor]
Length = 1154
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 124/358 (34%), Positives = 180/358 (50%), Gaps = 63/358 (17%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKF 63
N+PW+ + + ++KF FRPNQ IN + D ++MPT S +
Sbjct: 422 NFPWTKDLEAKNRNKFGNRSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALISV 481
Query: 64 NLTDFRPNQLAAINIALLKKDAIIIMP---------TGKL--LKKKKICLMTESSSLKLL 112
LT L + L +D I+ + +G L ++++I +S KLL
Sbjct: 482 GLT------LVVCPLVSLIQDQIMHLSQANIPATYLSGNLDWSEQQEIMRDLKSCRYKLL 535
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
YV+PEK+A+S + L+ + G L+RI IDE HC S WGHDFRPDY+ L +LK FP
Sbjct: 536 YVTPEKIARSGALSGLLRDLDSQGHLSRIVIDEAHCVSQWGHDFRPDYKELGVLKQNFPK 595
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
P+L LTATAT +V DV + L +E+C+V K FNRPNL Y +R K K C++++
Sbjct: 596 TPVLALTATATARVKEDVVQALALENCIVFKQSFNRPNLRYYLRPK---TKKCVEDIDMF 652
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES---------------NV 277
+ + GIIY S +CE + E+LR G V+ YH ++ N+
Sbjct: 653 IRENHYKECGIIYCLSRMDCEKVSEKLRECGHTVAHYHGSMDPVNRTRIQEDWSKDKINI 712
Query: 278 ---SIAFGL-------------------------GIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+ GI+KP+VRFVIHH L KS+E ++Q
Sbjct: 713 ICATIAFGMGNLIFQTPVYVTSIIGCSILIGQTVGINKPDVRFVIHHSLPKSIEGYHQ 770
>gi|71402467|ref|XP_804144.1| ATP-dependent DEAD/H DNA helicase recQ [Trypanosoma cruzi strain CL
Brener]
gi|70866957|gb|EAN82293.1| ATP-dependent DEAD/H DNA helicase recQ, putative [Trypanosoma
cruzi]
Length = 1310
Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats.
Identities = 119/332 (35%), Positives = 175/332 (52%), Gaps = 29/332 (8%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
N+ WS +R + F L +R QL +N + +DA +++PT S ++ +++ +
Sbjct: 366 NFSWSADLRRTMIDVFGLHQYRFLQLEIMNACMDGRDAFVLLPTGGGKSLCYQLPALMPN 425
Query: 62 KFNLTDFRPNQLAAIN---IALLKKDAIIIMPTGKLLKKKKICLMTESSSLK----LLYV 114
+T ++ I AL+ D I TG+ + L E +S + L+YV
Sbjct: 426 PAQVTIVISPLISLIQDQVYALIANDIPAIALTGQTSDAPRRALFAEWASGRIVHTLVYV 485
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PE +S F+ L + G L+R +DE HC S WGHDFRPDY+ L+ILK FP +P
Sbjct: 486 TPEYFGRSDHFVQCLVHLASRGLLSRFVVDEAHCVSQWGHDFRPDYRKLAILKQHFPAIP 545
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
I LTATAT V D+ L+++D +V K FNR NL Y VR + + DL+
Sbjct: 546 ISALTATATDMVQQDIISTLRLQDALVFKGSFNRQNLSYSVR---KVGRSVGQVVVDLIK 602
Query: 235 RRFRNQS-GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------V 277
RF +S GI+Y S K+CE++ EL G+R S YHA+
Sbjct: 603 HRFPPRSCGIVYCLSRKDCENMAAELVGAGIRASYYHAEASGKNEKQERWTKDEIQVICA 662
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
+IAFG+GI+KP+VRFVIH + KS+E +YQ S
Sbjct: 663 TIAFGMGINKPDVRFVIHAAMPKSIEGYYQES 694
>gi|410080512|ref|XP_003957836.1| hypothetical protein KAFR_0F01050 [Kazachstania africana CBS 2517]
gi|372464423|emb|CCF58701.1| hypothetical protein KAFR_0F01050 [Kazachstania africana CBS 2517]
Length = 873
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 116/331 (35%), Positives = 167/331 (50%), Gaps = 73/331 (22%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG----------KLLKK 97
++ WS + L++ F L +FR +QL+AIN L D I+MPTG +++
Sbjct: 213 NHLWSGELVYKLQNVFKLPNFRSDQLSAINATLSGDDVFILMPTGGGKSLCYQLPSIIRS 272
Query: 98 KKICLMT-------------------------------------------ESSSLKLLYV 114
C T + L LLY+
Sbjct: 273 GVTCGTTIVISPLISLMQDQIDHLLQLNIKACSISSKLSTSQRNFYFSLFANGDLDLLYI 332
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
SPE L SK F T L K++K+ LARIA+DE HC S+WGHDFRPDY+ L + +PD+P
Sbjct: 333 SPEMLTASKKFKTTLDKLHKSRKLARIAVDEAHCLSNWGHDFRPDYKNLDYFRINYPDIP 392
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
I+ LTATA V D+ + L++ +V+K FNR NLFYEV P +K ++A +
Sbjct: 393 IVALTATANNLVQDDIIRNLRLGRPLVLKQSFNRNNLFYEVL--PKDKKIVTSQIASYIL 450
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL------------ESN------ 276
F++QSGI+Y S CE + L G++ S YHA + +SN
Sbjct: 451 NDFKSQSGIVYCHSKDTCEKVSMALTQMGVKASFYHAGMTNKQRDHVQKLWQSNRYQVIC 510
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GIDK +VRFVIH+ + +S+E +YQ
Sbjct: 511 ATVAFGMGIDKADVRFVIHYTVPRSLEGYYQ 541
>gi|195112008|ref|XP_002000568.1| GI22449 [Drosophila mojavensis]
gi|193917162|gb|EDW16029.1| GI22449 [Drosophila mojavensis]
Length = 1409
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/339 (36%), Positives = 177/339 (52%), Gaps = 37/339 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DR 54
Y S R+ L F L FRPNQL IN ALL D ++MPT S +
Sbjct: 632 YEHSTRLMQALSFSFGLKSFRPNQLQVINAALLGNDCFVLMPTGGGKSLCYQLPAILTEG 691
Query: 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS--LKLL 112
V V+ +L + ++L++++I A I L + I ES +KLL
Sbjct: 692 VTIVISPLKSLIFDQVSKLSSLDIC-----AKSISGDQSLDEVMTIYRDLESHPPLVKLL 746
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
YV+PEK++ S F L ++ ++R IDE HC S WGHDFRPDY+ L IL+ FP+
Sbjct: 747 YVTPEKISSSPRFQDTLDQLNANNYISRFVIDEAHCVSQWGHDFRPDYKKLGILRKRFPN 806
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
VP + LTATAT +V D+ + L + C + FNR NL Y+V K LD++ +
Sbjct: 807 VPTMALTATATPRVRQDILQQLNLTHCKWFLSSFNRRNLRYQVLPKKGVS--TLDDMRNF 864
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------- 277
+ R SGIIY S KEC+++ +++ G+R +YHA L V
Sbjct: 865 IQSRPATASGIIYCLSRKECDEVAKKMCAVGIRALSYHAGLTDVVRESRQKDWITNKVRV 924
Query: 278 ---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFV+H+ L KS+E +YQ + G
Sbjct: 925 ICATIAFGMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAG 963
>gi|405119097|gb|AFR93870.1| ATP-dependent DNA helicase hus2/rqh1 [Cryptococcus neoformans var.
grubii H99]
Length = 934
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 177/340 (52%), Gaps = 35/340 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS-----DRVRSVL 59
+PWS V L+ F L +FR +Q AI+ + KD ++MPT S V S
Sbjct: 90 HPWSKEVNQKLRQVFKLPNFRKHQKEAIDETMAGKDVFVLMPTGGGKSLTYQLPAVCSSG 149
Query: 60 KSKFNLTDFRPNQLAAINIA---LLKKDAIIIMPTGKLLKKKKICLMTESSS----LKLL 112
K++ +T ++ IN L+ + I TG L ++ K E S K++
Sbjct: 150 KTR-GVTFVVSPLISLINDQTRHLISRGIPAIAYTGDLTQRDKNVAHEELSKREPITKVV 208
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
YV+PE ++ + L+ + + LAR IDE HC S WGHDFR DY L L+ +P
Sbjct: 209 YVTPEMMSMGGHIKSILRGLLQRKQLARFVIDEAHCVSQWGHDFRADYLRLGELRRDYPG 268
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
VPI+ LTATA KV D+ + L+IE CV ++ FNRPNL YEVR K ++ + E+
Sbjct: 269 VPIMALTATAQNKVQEDIIRSLRIEGCVCLRQSFNRPNLHYEVRPKTSS---VIQEIVAF 325
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELR-NRGLRVSAYHAKLESN--------------- 276
+ + SGI+Y S CE+L ++LR + GLR YHA +
Sbjct: 326 VRTQEARASGIVYCNSRDNCENLAKKLREDHGLRAYHYHAGMTKENRRKMQEGWQDHKFE 385
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VR+VIHH L +S+E +YQ + G
Sbjct: 386 IMVATIAFGMGIDKPDVRYVIHHHLPRSLEGYYQETGRAG 425
>gi|195396248|ref|XP_002056744.1| GJ10048 [Drosophila virilis]
gi|194143453|gb|EDW59856.1| GJ10048 [Drosophila virilis]
Length = 1324
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 120/337 (35%), Positives = 164/337 (48%), Gaps = 77/337 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC-----LM 103
+ S R+ L F L FRPNQL IN ALL D ++MPTG K +C ++
Sbjct: 550 FEHSTRLMQALSFSFGLKSFRPNQLQVINAALLGNDCFVLMPTGG---GKSLCYQLPAIL 606
Query: 104 TESSSL-------------------------------------------------KLLYV 114
TE ++ KLLYV
Sbjct: 607 TEGVTIVISPLKSLIFDQVNKLASLDICAKSMSGEQTLDEVMTIYRDLECHPPLVKLLYV 666
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PEK++ S F L ++ ++R IDE HC S WGHDFRPDY+ L IL+ FP+VP
Sbjct: 667 TPEKISSSARFQDTLDQLSANNYISRFVIDEAHCVSQWGHDFRPDYKKLGILRKRFPNVP 726
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
+ LTATAT +V D+ + L + C + FNR NL Y+V K A LD++ +
Sbjct: 727 SMALTATATPRVRQDILQQLNLTHCKWFLSSFNRSNLRYQVLPKKGAS--TLDDIRSFIQ 784
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL-----ESN------------- 276
R SGIIY S KEC+++ +++ G+R AYHA L ES
Sbjct: 785 TRAVTASGIIYCLSRKECDEVAQKMCAVGIRAVAYHAGLTDAARESRQKDWITNKVRVIC 844
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFV+H+ L KS+E +YQ + G
Sbjct: 845 ATIAFGMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAG 881
>gi|269861548|ref|XP_002650477.1| ATP-dependent DNA helicase recQ [Enterocytozoon bieneusi H348]
gi|220066069|gb|EED43580.1| ATP-dependent DNA helicase recQ [Enterocytozoon bieneusi H348]
Length = 793
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/344 (36%), Positives = 175/344 (50%), Gaps = 66/344 (19%)
Query: 7 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLT 66
+ D LK+ F L +FR NQ I +L D ++MPT S L
Sbjct: 261 YKDEKYFYLKTIFRLDEFRSNQKKIIEASLRGDDVFVLMPTGGGKS------------LC 308
Query: 67 DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMT---------------------- 104
P A IN+ L I+I P L++ + L+
Sbjct: 309 YQLP---ALINVGL----TIVISPLLSLIQDQISSLLNKNIPAAALNSNCTVGERDLIYK 361
Query: 105 ---ESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQ 161
+++ ++LLYV+PE L S F L+ +Y + R IDE HC S WGHDFRPDY+
Sbjct: 362 CIRDTNLIRLLYVTPELLNNSDRFKGILKSLYCENKVCRFVIDEAHCVSQWGHDFRPDYK 421
Query: 162 YLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAA 221
LS LK +P VPI+ LTATAT KV +D+ +L I++C + K+ FNRPNL Y R+ P
Sbjct: 422 ELSKLKQSYPTVPIIALTATATKKVEVDIINVLNIQNCKIFKSSFNRPNLIY--RVLPKT 479
Query: 222 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES------ 275
LD + ++ + + GIIY TS KECE + EEL +R L+++ YH L
Sbjct: 480 ATTILD-IVSFINSHYADSPGIIYCTSKKECEKMAEEL-SRDLKITYYHGGLSKYDRIRI 537
Query: 276 ---------NV---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
N+ ++AFG+GIDKP+VRFVIH+ L KS+E +YQ
Sbjct: 538 QEQWNNKTYNIIIATVAFGMGIDKPDVRFVIHYSLPKSLEGYYQ 581
>gi|71406960|ref|XP_805980.1| ATP-dependent DEAD/H DNA helicase recQ [Trypanosoma cruzi strain CL
Brener]
gi|70869587|gb|EAN84129.1| ATP-dependent DEAD/H DNA helicase recQ, putative [Trypanosoma
cruzi]
Length = 1451
Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats.
Identities = 119/332 (35%), Positives = 175/332 (52%), Gaps = 29/332 (8%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
N+ WS +R + F L +R QL +N + +DA +++PT S ++ +++ +
Sbjct: 366 NFSWSADLRRTMIDVFGLHQYRFLQLEIMNACMDGRDAFVLLPTGGGKSLCYQLPALMPN 425
Query: 62 KFNLTDFRPNQLAAIN---IALLKKDAIIIMPTGKLLKKKKICLMTESSSLK----LLYV 114
+T ++ I AL+ D I TG+ + L E +S + L+YV
Sbjct: 426 PAQVTIVISPLISLIQDQVYALIANDIPAIALTGQTSDAPRRALFAEWASGRIVHTLVYV 485
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PE +S F+ L + G L+R +DE HC S WGHDFRPDY+ L+ILK FP +P
Sbjct: 486 TPEYFGRSDHFVQCLVHLASRGLLSRFVVDEAHCVSQWGHDFRPDYRKLAILKQHFPAIP 545
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
I LTATAT V D+ L+++D +V K FNR NL Y VR + + DL+
Sbjct: 546 ISALTATATDMVQQDIISTLRLQDALVFKGSFNRQNLSYSVR---KVGRSVGQVVVDLIK 602
Query: 235 RRFRNQS-GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------V 277
RF +S GI+Y S K+CE++ EL G+R S YHA+
Sbjct: 603 HRFPPRSCGIVYCLSRKDCENMAAELVGAGIRASYYHAEASGKNEKQERWTKDELQVICA 662
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
+IAFG+GI+KP+VRFVIH + KS+E +YQ S
Sbjct: 663 TIAFGMGINKPDVRFVIHAAMPKSIEGYYQES 694
>gi|134111480|ref|XP_775656.1| hypothetical protein CNBD6100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258318|gb|EAL21009.1| hypothetical protein CNBD6100 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 893
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 185/377 (49%), Gaps = 87/377 (23%)
Query: 18 KFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAIN 77
+F L+ N + ++ + I + +P+S + + L++ FNL FR Q IN
Sbjct: 95 EFQLSSISRNPCPSDSLFSTAANTIDYQSSCFPFSSAIAATLRNTFNLNKFRLCQEGVIN 154
Query: 78 IALLKKDAIIIMPTG--------------------------------KLLKKKKI-CLMT 104
A+ +D + +MPTG + LK+ I C+M
Sbjct: 155 AAVDDRDIVCVMPTGGGKSLTYQLPAVMGRGLTVVVSPLLALIWDQVRALKEIGIECVML 214
Query: 105 ESSS----------------------LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIA 142
S+ ++L YV+PEK++KSK FM+ L+KM ++G L R
Sbjct: 215 TGSTSTQEQNEIYKRLRDGPSHGEKEIRLCYVTPEKVSKSKRFMSVLEKMNQSGRLRRFV 274
Query: 143 IDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQI------ 196
IDE HCCS GHDFRPDY+ LS+LKT+FP VPI +TAT ++K + D+ K+L++
Sbjct: 275 IDEAHCCSQLGHDFRPDYKKLSMLKTLFPRVPIQAVTATLSSKTLPDLLKILRLGPITDG 334
Query: 197 -----EDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKE 251
V +P RPNL Y+V K + K + E+ + + +SGI+Y S K+
Sbjct: 335 RSSKTTGTVFFSSPLFRPNLHYKVLPKASNAKTAIAEMGRWIQDKHPGESGIVYCLSKKD 394
Query: 252 CEDLREELR---NRGLRVSAYHAKLESN------------------VSIAFGLGIDKPNV 290
E + EEL+ N ++ YHA ++ +IAFGLGIDK +V
Sbjct: 395 AETVAEELKGWSNGSIKTGVYHAGIDDTEKETIHVKWREGKINCICATIAFGLGIDKGDV 454
Query: 291 RFVIHHCLSKSMENFYQ 307
R+VIHH +SKS+E +YQ
Sbjct: 455 RYVIHHSMSKSLEGYYQ 471
>gi|407425855|gb|EKF39533.1| ATP-dependent DEAD/H DNA helicase recQ, putative [Trypanosoma cruzi
marinkellei]
Length = 1364
Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats.
Identities = 119/332 (35%), Positives = 175/332 (52%), Gaps = 29/332 (8%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
N+ WS +R + F L +R QL +N + +DA +++PT S ++ +++ +
Sbjct: 366 NFSWSADLRRTMIDVFGLHQYRFLQLEIMNACMDGRDAFVLLPTGGGKSLCYQLPALMPN 425
Query: 62 KFNLTDFRPNQLAAIN---IALLKKDAIIIMPTGKLLKKKKICLMTESSSLK----LLYV 114
+T ++ I AL+ D I TG+ + L E +S + L+YV
Sbjct: 426 PAQVTIVISPLISLIQDQVYALIANDIPAIALTGQTSDAPRRALFAEWASGRIVHTLVYV 485
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PE +S F+ L + G L+R +DE HC S WGHDFRPDY+ L+ILK FP +P
Sbjct: 486 TPEYFGRSDHFVQCLVHLASRGLLSRFVVDEAHCVSQWGHDFRPDYRKLTILKQHFPAIP 545
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
I LTATAT V D+ L+++D +V K FNR NL Y VR + + DL+
Sbjct: 546 ISALTATATDMVQQDIISTLRLQDALVFKGSFNRQNLSYSVR---KVGRSVGQVVVDLIK 602
Query: 235 RRFRNQS-GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------V 277
RF +S GI+Y S K+CE++ EL G+R S YHA+
Sbjct: 603 HRFPPRSCGIVYCLSRKDCENMAAELVGAGIRASYYHAEASGKNEKQERWTKDELQVICA 662
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
+IAFG+GI+KP+VRFVIH + KS+E +YQ S
Sbjct: 663 TIAFGMGINKPDVRFVIHAAMPKSIEGYYQES 694
>gi|367043916|ref|XP_003652338.1| hypothetical protein THITE_2113711 [Thielavia terrestris NRRL 8126]
gi|346999600|gb|AEO66002.1| hypothetical protein THITE_2113711 [Thielavia terrestris NRRL 8126]
Length = 1637
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 129/391 (32%), Positives = 184/391 (47%), Gaps = 81/391 (20%)
Query: 1 MLPNYPWSDRVRSVL-KSKFNLTDFRPNQLAAINIALLKKDAIIIMP-TDYPWSDRVRSV 58
ML P + R RS L +S N +L A + L + A I + YPWS+ VR
Sbjct: 637 MLAARPHAHRERSALSESSGNAGPPVRKRLTAKSAPLRQPKASINLELMKYPWSEDVRRA 696
Query: 59 LKSKFNLTDFRPNQL-----------------------------AAINIALLKKDAIIIM 89
LK +F +T FR NQL A +N + ++I
Sbjct: 697 LKDRFRMTGFRHNQLEAINATLAGKDAFVLMPTGGGKSLCYQLPAMVNSGKTRGITLVIS 756
Query: 90 PTGKL-------LKKKKICLMTESSSL---------------------KLLYVSPEKLAK 121
P L LK+ I + + S+ +LLY +PE L
Sbjct: 757 PLLSLMNDQVAHLKRLNILATSFNGSINSELRNHILSVFREENPEHFIQLLYATPEMLTS 816
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
S +F ++ +Y+ LARI IDE HC S WGHDFRPDY+ L + F VP++ LTAT
Sbjct: 817 SPAFRKGIETLYRKKKLARIVIDEAHCVSHWGHDFRPDYKALGQFRLAFTGVPVMALTAT 876
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQS 241
AT+ V+ D++ L +E C V FNRPNL+YEV K Q + + +++++++ QS
Sbjct: 877 ATSNVIADIKHNLSMEGCEVFSQSFNRPNLYYEVIEK---QTRFIQGMGEMITKKYPGQS 933
Query: 242 GIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN------------------VSIAFG 282
GI+YT S K E L + G++ YHA ++ +IAFG
Sbjct: 934 GIVYTLSRKSAEGTASTLATKHGIKARYYHAMMDPESKAEVQRKWQEGEIHVVVATIAFG 993
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+GIDKP+VRFVIH L KS+E +YQ + G
Sbjct: 994 MGIDKPDVRFVIHQNLPKSLEGYYQETGRAG 1024
>gi|157870239|ref|XP_001683670.1| putative ATP-dependent DEAD/H DNA helicase recQ [Leishmania major
strain Friedlin]
gi|68126736|emb|CAJ05096.1| putative ATP-dependent DEAD/H DNA helicase recQ [Leishmania major
strain Friedlin]
Length = 1691
Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats.
Identities = 117/331 (35%), Positives = 174/331 (52%), Gaps = 28/331 (8%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
+PWS +R +++ F L D+R QL +N + +D +++PT S ++ +++ +
Sbjct: 251 FPWSAELRRMMREVFGLHDYRFCQLEIMNACMDGRDVFVLLPTGGGKSLCYQLPALMPNP 310
Query: 63 FNLTDFRPNQLAAIN---IALLKKDAIIIMPTGKLLKKKKICLMTESSS----LKLLYVS 115
+T ++ I AL+ D + TG+ + L E +S L+YV+
Sbjct: 311 AQVTIVVSPLISLIQDQVYALIANDIPAMALTGQTNDAARRSLFQEWASGHVVHTLVYVT 370
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE +S F+ LQ + G L R IDE HC S WGHDFRPDY+ LS+LK F PI
Sbjct: 371 PEYFGRSDHFVGTLQGLADKGLLCRFVIDEAHCVSQWGHDFRPDYRKLSVLKRQFLRTPI 430
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
LTATAT V DV K L + D ++ K FNR NL Y V + K + + DL+
Sbjct: 431 TALTATATDLVQQDVIKTLALRDAIIFKGSFNRANLKYSV--QHVRGKQVIPVVEDLVLH 488
Query: 236 RFRNQS-GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------VS 278
RF S GI+Y S K+CE++ L RG++ S YH++ S +
Sbjct: 489 RFSPSSCGIVYCLSRKDCEEMAAALVRRGIKASYYHSEAASKNERQERWTRDELQVICAT 548
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
IAFG+GI+KP+VR+V+H + KS+E +YQ S
Sbjct: 549 IAFGMGINKPDVRYVVHAAMPKSIEGYYQES 579
>gi|407860729|gb|EKG07462.1| ATP-dependent DEAD/H DNA helicase recQ, putative [Trypanosoma
cruzi]
Length = 1310
Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats.
Identities = 119/332 (35%), Positives = 175/332 (52%), Gaps = 29/332 (8%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
N+ WS +R + F L +R QL +N + +DA +++PT S ++ +++ +
Sbjct: 221 NFSWSADLRRTMIDVFGLHQYRFLQLEIMNACMDGRDAFVLLPTGGGKSLCYQLPALMPN 280
Query: 62 KFNLTDFRPNQLAAIN---IALLKKDAIIIMPTGKLLKKKKICLMTESSSLK----LLYV 114
+T ++ I AL+ D I TG+ + L E +S + L+YV
Sbjct: 281 PAQVTIVISPLISLIQDQVYALIANDIPAIALTGQTSDAPRRALFAEWASGRIVHTLVYV 340
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PE +S F+ L + G L+R +DE HC S WGHDFRPDY+ L+ILK FP +P
Sbjct: 341 TPEYFGRSDHFVQCLVHLASRGLLSRFVVDEAHCVSQWGHDFRPDYRKLAILKQHFPAIP 400
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
I LTATAT V D+ L+++D +V K FNR NL Y VR + + DL+
Sbjct: 401 ISALTATATDMVQQDIITTLRLQDALVFKGSFNRQNLSYSVR---KVGRSVGQVVVDLIK 457
Query: 235 RRFRNQS-GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------V 277
RF +S GI+Y S K+CE++ EL G+R S YHA+
Sbjct: 458 HRFPPRSCGIVYCLSRKDCENMAAELVGAGIRASYYHAEASGKNEKQERWTKDELQVICA 517
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
+IAFG+GI+KP+VRFVIH + KS+E +YQ S
Sbjct: 518 TIAFGMGINKPDVRFVIHAAMPKSIEGYYQES 549
>gi|407042405|gb|EKE41307.1| recQ family helicase, putative [Entamoeba nuttalli P19]
Length = 1173
Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats.
Identities = 114/333 (34%), Positives = 165/333 (49%), Gaps = 74/333 (22%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL---------- 95
++ W + ++ + F FRP+Q A IN + + +A+++MPT GK L
Sbjct: 434 EFSWKENIKKCNNTVFGNDSFRPSQEAIINCVMSRNNALVLMPTGGGKSLCYQLPSYFIK 493
Query: 96 -----------------------KKKKICLMTESSS------------------LKLLYV 114
+ I + SSS +K ++V
Sbjct: 494 GITLVVSPLVSLIQDQVSNLVETGMEAIAFYSGSSSEEAKQFYKESYQKEGKCTIKFVFV 553
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PE++ +SKSF L + Y+ + IDE HC S WGHDFR YQ LS+ +P +P
Sbjct: 554 TPERITQSKSFKEALNRYYENNNFGMVVIDEAHCISQWGHDFRDSYQKLSVFSQEYPGIP 613
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
IL LTATAT +V D+ L I + VV FNR NL Y VR K K +DE+ +++
Sbjct: 614 ILMLTATATERVKNDILLSLGINEAVVFSQSFNRKNLTYCVRPK---TKGVIDEIEEMIK 670
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------ 276
R+++ QSGIIY S K D+ +EL RG++ YHA +++
Sbjct: 671 RKYKGQSGIIYCLSQKNTMDIAQELNKRGIKSKYYHAGMDTKERTTVQKEWCDGEFNVIC 730
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
+IAFG+GIDKP+VRFVIHH L KS+E +YQ S
Sbjct: 731 ATIAFGMGIDKPDVRFVIHHSLPKSLEGYYQES 763
>gi|72393397|ref|XP_847499.1| ATP-dependent DEAD/H DNA helicase recQ [Trypanosoma brucei TREU927]
gi|62359597|gb|AAX80030.1| ATP-dependent DEAD/H DNA helicase recQ, putative [Trypanosoma
brucei]
gi|70803529|gb|AAZ13433.1| ATP-dependent DEAD/H DNA helicase recQ, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 1548
Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats.
Identities = 123/340 (36%), Positives = 176/340 (51%), Gaps = 45/340 (13%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------------YPW 51
+YPWS+ +R + F L +FR QL +N + +D +++PT P
Sbjct: 444 HYPWSEELRRTMVDVFGLHNFRFLQLEIMNACMANRDVFVLLPTGGGKSLCYQLPALLPN 503
Query: 52 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLK- 110
+V V+ +L +Q+ A+ L A+ TG+ L + L E SS +
Sbjct: 504 PAKVTIVISPLVSLIQ---DQVYALRAYDLPAMAL----TGQTLDAPRRDLFNEWSSGRI 556
Query: 111 ---LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
L+YV+PE +S F+ L+ + G L R +DE HC S WGHDFRPDY+ L+ LK
Sbjct: 557 VCTLVYVTPEYFGRSDHFVQSLKSLENRGLLNRFVVDEAHCVSQWGHDFRPDYRKLAALK 616
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV-RIKPAAQKDCL 226
FP VPI LTATAT V D+ + L + + V K FNR NL Y V RI A
Sbjct: 617 HHFPQVPISALTATATDTVQRDIIQTLGLHNAVSFKGSFNRHNLKYSVQRITSKAGS--- 673
Query: 227 DELADLMSRRFRNQS-GIIYTTSIKECEDLREELRNRGLRVSAYHAKL-ESN-------- 276
+A+++ + F +S GI+Y S K+CE++ LR G+R S YHA E N
Sbjct: 674 -TVAEIIKKNFPPRSCGIVYCISKKDCEEMAAVLRKEGIRASYYHADASEKNEKQEQWTR 732
Query: 277 -------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
++AFG+GI+KP+VRFVIH + KS+E +YQ S
Sbjct: 733 DELQVLCATVAFGMGINKPDVRFVIHAAMPKSIEGYYQES 772
>gi|356541884|ref|XP_003539402.1| PREDICTED: ATP-dependent DNA helicase Q-like 4A-like [Glycine max]
Length = 1534
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 118/341 (34%), Positives = 170/341 (49%), Gaps = 73/341 (21%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG--------------- 92
D+ W+ + K F FRPNQ IN ++ D ++MPTG
Sbjct: 765 DFSWTKELEVNNKKVFGNHSFRPNQREIINASMSGCDVFVLMPTGGGKSLTYQLPALIHP 824
Query: 93 ----------KLLKKKKICLM---------------TESSSL-----------KLLYVSP 116
L++ + + L+ TE + KLLYV+P
Sbjct: 825 GITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQDILRELNSDYCKYKLLYVTP 884
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+A+S + + L ++ LARI IDE HC S WGHDFRPDYQ L ILK FP+ P+L
Sbjct: 885 EKVARSDNLLRHLDNLHFRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVL 944
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATAT V DV + L + +C++ + FNRPNL Y V K K CL+++ +
Sbjct: 945 ALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLRYSVIPK---TKKCLEDIDKFIREN 1001
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL---------------ESNV---S 278
++ GI+Y S +CE + E+L+ G + + YH + E N+ +
Sbjct: 1002 HFDECGIVYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPVQRASVQKQWSKDEINIICAT 1061
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+AFG+GI+KP+VRFVIHH L KS+E ++Q G G+HS
Sbjct: 1062 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQHS 1102
>gi|403364021|gb|EJY81760.1| ATP-dependent DNA helicase, RecQ family protein [Oxytricha
trifallax]
Length = 923
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 117/327 (35%), Positives = 180/327 (55%), Gaps = 24/327 (7%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
+PW ++ + F F NQ IN AL KD + ++PT S ++ +++ +
Sbjct: 334 FPWDQHIQEFNQKVFRNKTFLENQREIINAALNGKDVMALIPTGGGKSLTFQLTALMNNG 393
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC--LMTESSSL-KLLYVSPEKL 119
+ L I L++ + + + +K+ + L+ S L KL+Y++PEKL
Sbjct: 394 YTFVIMPLIALIEDQIEQLRRLKVKCVYYNRSIKQGQFYTDLLANSDPLMKLIYLTPEKL 453
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
++K F+ L K+Y+ +AR IDEVHC S WG DFR DY+ L IL+ +P VP++ LT
Sbjct: 454 VQTKPFINILDKLYQDNRIARFVIDEVHCVSHWGQDFRKDYRELQILRMRYPTVPMIVLT 513
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM-SRRFR 238
ATAT V D+ K L++++ V ++ FNRPNL YE+R K +K+ +++ L+ R++
Sbjct: 514 ATATIAVKYDIVKHLKLDNIVFFQSSFNRPNLLYEIRDKAKIKKNIAEDIIMLLRDRKYV 573
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIA 280
QSGIIY S ECE+L EL ++ YHAK+ N +IA
Sbjct: 574 YQSGIIYCLSRTECEELCRELSEFDVKCDYYHAKMNENERRIIQQRWMRNEIHIIIATIA 633
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FGLGI+K +VRFVIH + KS+EN+ Q
Sbjct: 634 FGLGINKRDVRFVIHTTIPKSLENYAQ 660
>gi|269859903|ref|XP_002649675.1| ATP-dependent DNA helicase recQ [Enterocytozoon bieneusi H348]
gi|220066870|gb|EED44340.1| ATP-dependent DNA helicase recQ [Enterocytozoon bieneusi H348]
Length = 793
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 124/344 (36%), Positives = 175/344 (50%), Gaps = 66/344 (19%)
Query: 7 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLT 66
+ D LK+ F L +FR NQ I +L D ++MPT S L
Sbjct: 261 YKDEKYFYLKTIFRLDEFRSNQKKIIEASLRGDDVFVLMPTGGGKS------------LC 308
Query: 67 DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMT---------------------- 104
P A IN+ L I+I P L++ + L+
Sbjct: 309 YQLP---ALINVGL----TIVISPLLSLIQDQISSLLNKNIPAAALNSNCTVGERDLIYK 361
Query: 105 ---ESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQ 161
+++ ++LLYV+PE L S F L+ +Y + R IDE HC S WGHDFRPDY+
Sbjct: 362 CIRDTNLIRLLYVTPELLNNSDRFKGILKSLYCENKVCRFVIDEAHCVSQWGHDFRPDYK 421
Query: 162 YLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAA 221
LS L+ +P VPI+ LTATAT KV +D+ +L I++C + K+ FNRPNL Y R+ P
Sbjct: 422 ELSKLRQSYPTVPIIALTATATKKVEVDIINVLNIQNCKIFKSSFNRPNLIY--RVLPKT 479
Query: 222 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES------ 275
LD + ++ + + GIIY TS KECE + EEL +R L+++ YH L
Sbjct: 480 ATTILD-IVSFINSHYADSPGIIYCTSKKECEKMAEEL-SRDLKITYYHGGLSKYDRIRI 537
Query: 276 ---------NV---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
N+ ++AFG+GIDKP+VRFVIH+ L KS+E +YQ
Sbjct: 538 QEQWNNKTYNIIIATVAFGMGIDKPDVRFVIHYSLPKSLEGYYQ 581
>gi|449704341|gb|EMD44603.1| ATP-dependent helicase SGS1, putative [Entamoeba histolytica KU27]
Length = 1170
Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats.
Identities = 114/333 (34%), Positives = 165/333 (49%), Gaps = 74/333 (22%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL---------- 95
++ W + ++ + F FRP+Q A IN + + +A+++MPT GK L
Sbjct: 431 EFSWKENIKKCNNTVFGNDSFRPSQEAIINCVMSRNNALVLMPTGGGKSLCYQLPSYFIK 490
Query: 96 -----------------------KKKKICLMTESSS------------------LKLLYV 114
+ I + SSS +K ++V
Sbjct: 491 GITLVVSPLVSLIQDQVSNLVETGMEAIAFYSGSSSEDAKQFYKESYQKEGKCTIKFVFV 550
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PE++ +SKSF L + Y+ + IDE HC S WGHDFR YQ LS+ +P +P
Sbjct: 551 TPERITQSKSFKEALNRYYENNNFGMVVIDEAHCISQWGHDFRDSYQKLSVFSQEYPGIP 610
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
IL LTATAT +V D+ L I + VV FNR NL Y VR K K +DE+ +++
Sbjct: 611 ILMLTATATERVKNDILLSLGINEAVVFSQSFNRKNLTYCVRPK---TKGVIDEIEEMIK 667
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------ 276
R+++ QSGIIY S K D+ +EL RG++ YHA +++
Sbjct: 668 RKYKGQSGIIYCLSQKNTMDIAQELNKRGIKSKYYHAGMDTKERTTVQKEWCDGEFNVIC 727
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
+IAFG+GIDKP+VRFVIHH L KS+E +YQ S
Sbjct: 728 ATIAFGMGIDKPDVRFVIHHSLPKSLEGYYQES 760
>gi|67469885|ref|XP_650914.1| recQ family helicase [Entamoeba histolytica HM-1:IMSS]
gi|56467579|gb|EAL45525.1| recQ family helicase, putative [Entamoeba histolytica HM-1:IMSS]
Length = 1182
Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats.
Identities = 114/333 (34%), Positives = 165/333 (49%), Gaps = 74/333 (22%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL---------- 95
++ W + ++ + F FRP+Q A IN + + +A+++MPT GK L
Sbjct: 443 EFSWKENIKKCNNTVFGNDSFRPSQEAIINCVMSRNNALVLMPTGGGKSLCYQLPSYFIK 502
Query: 96 -----------------------KKKKICLMTESSS------------------LKLLYV 114
+ I + SSS +K ++V
Sbjct: 503 GITLVVSPLVSLIQDQVSNLVETGMEAIAFYSGSSSEDAKQFYKESYQKEGKCTIKFVFV 562
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PE++ +SKSF L + Y+ + IDE HC S WGHDFR YQ LS+ +P +P
Sbjct: 563 TPERITQSKSFKEALNRYYENNNFGMVVIDEAHCISQWGHDFRDSYQKLSVFSQEYPGIP 622
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
IL LTATAT +V D+ L I + VV FNR NL Y VR K K +DE+ +++
Sbjct: 623 ILMLTATATERVKNDILLSLGINEAVVFSQSFNRKNLTYCVRPK---TKGVIDEIEEMIK 679
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------ 276
R+++ QSGIIY S K D+ +EL RG++ YHA +++
Sbjct: 680 RKYKGQSGIIYCLSQKNTMDIAQELNKRGIKSKYYHAGMDTKERTTVQKEWCDGEFNVIC 739
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
+IAFG+GIDKP+VRFVIHH L KS+E +YQ S
Sbjct: 740 ATIAFGMGIDKPDVRFVIHHSLPKSLEGYYQES 772
>gi|242071927|ref|XP_002451240.1| hypothetical protein SORBIDRAFT_05g026350 [Sorghum bicolor]
gi|241937083|gb|EES10228.1| hypothetical protein SORBIDRAFT_05g026350 [Sorghum bicolor]
Length = 624
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 167/327 (51%), Gaps = 40/327 (12%)
Query: 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YPWSDRVRSVLKSKFNL 65
F FRP Q A A+ +D I+MPT +P V S L S
Sbjct: 220 FGNKSFRPLQYEACRAAMNNQDCFILMPTGGGKSLCYQLPATLHPGVTVVVSPLLSLIQD 279
Query: 66 TDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSF 125
AI A L + + + L + S KLLYV+PE++A + SF
Sbjct: 280 QIVALTYKFAIPAAFLNSQQTPAQASAVIQE-----LRYGTPSFKLLYVTPERIAANYSF 334
Query: 126 MTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTK 185
M L+ + + G LAR IDE HC S WGHDFRPDY+ L LK FP VPI+ LTATAT
Sbjct: 335 MEMLRGLDQRGLLARFVIDEAHCVSQWGHDFRPDYRGLGCLKQNFPRVPIMALTATATES 394
Query: 186 VMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIY 245
V DV L+I + V++K F+R NL YEV K + +L DL+ RF N+SGI+Y
Sbjct: 395 VRKDVLSALRIPNAVILKRSFDRLNLNYEVIGKTKTPQ---KQLGDLLKERFMNKSGIVY 451
Query: 246 TTSIKECEDLREELRNR-GLRVSAYHAKLESN------------------VSIAFGLGID 286
S EC D + LR + ++ + YHA L + +IAFG+GID
Sbjct: 452 CLSKNECADTAKFLREKYKIKCAHYHAGLAARQRTSVQEKWHSGEVKVICATIAFGMGID 511
Query: 287 KPNVRFVIHHCLSKSMENFYQVSIAFG 313
KP+VRFVIH+ +SKS+E++YQ S G
Sbjct: 512 KPDVRFVIHNTMSKSIESYYQESGRAG 538
>gi|178056740|ref|NP_001116556.1| Bloom syndrome protein [Sus scrofa]
gi|168084100|dbj|BAG09489.1| Bloom syndrome protein [Sus scrofa]
Length = 1426
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 126/360 (35%), Positives = 175/360 (48%), Gaps = 76/360 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------- 52
N+P + + + KF L +FR NQL AIN ALL +D I+MPT S
Sbjct: 660 NFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSS 719
Query: 53 --------------DRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
D+V+ + + + + D ++ +I + L KKD II
Sbjct: 720 GVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPII------- 772
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y LAR IDE HC S WGH
Sbjct: 773 ---------------KLLYVTPEKVCASNRLISTLENLYNRKLLARFVIDEAHCVSQWGH 817
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFRPDY+ +++L+ FP VP++ LTATA +V D+ L+I V FNR NL Y
Sbjct: 818 DFRPDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFTMSFNRHNLKYY 877
Query: 215 VRIKPAAQK--DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
V K + DCL + + + + SGIIY S +EC+ + + L+ GL AYHA
Sbjct: 878 VLPKKPKKVAFDCL----EWIRKHHPHDSGIIYCLSRRECDTMADTLQKDGLAALAYHAG 933
Query: 273 LESN-------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L + +IAFG+GIDKP+VRFVIH L KS+E +YQ S G
Sbjct: 934 LSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAG 993
>gi|221482271|gb|EEE20626.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
Length = 1625
Score = 194 bits (493), Expect = 5e-47, Method: Composition-based stats.
Identities = 119/336 (35%), Positives = 175/336 (52%), Gaps = 41/336 (12%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
++P+S RV + K F TDFR QL AIN + +D ++MPT S
Sbjct: 624 DFPFSARVDRINKEVFGYTDFRGLQLGAINAVMSGRDCFLVMPTGGGKSLCYQLPAYALG 683
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE----SSSL 109
+ V+ L + L + + K D G++ K + L E S SL
Sbjct: 684 GLTLVISPLLALMGDQLRSLKNLGVEAAKID-------GEISKSDLLALYDELSQPSFSL 736
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169
++L +PE LA+S++ T L+ ++ G L+ + +DE HC WG DFR DY L LK
Sbjct: 737 RVLMATPEFLARSEALTTVLRSVHARGLLSLLVVDEAHCVCQWGEDFRADYLSLGRLKKT 796
Query: 170 FPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDEL 229
FPDVP+L LTA+A+ V +V+++L+I V + NRPNLF EVR K +++ D
Sbjct: 797 FPDVPLLALTASASPDVFSEVKRILRIPKSVDFRMSINRPNLFLEVREK--SRQTIYDIH 854
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------- 276
L S RN++GIIY SIK+CE + L + +R + YHAK+ S
Sbjct: 855 RLLSSPALRNEAGIIYCLSIKDCEVVASHLISLEIRAAPYHAKMASRRRQETQAAWMAGD 914
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFGLG+D+P+VRFV HH + S+E +YQ
Sbjct: 915 IAVIVSTVAFGLGVDRPDVRFVFHHSMPPSLERYYQ 950
>gi|167386794|ref|XP_001737905.1| ATP-dependent helicase SGS1 [Entamoeba dispar SAW760]
gi|165899114|gb|EDR25795.1| ATP-dependent helicase SGS1, putative [Entamoeba dispar SAW760]
Length = 1162
Score = 194 bits (492), Expect = 6e-47, Method: Composition-based stats.
Identities = 114/333 (34%), Positives = 165/333 (49%), Gaps = 74/333 (22%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL---------- 95
++ W + ++ + F FRP+Q A IN + + +A+++MPT GK L
Sbjct: 426 EFSWKENIKKCNNAVFGNDSFRPSQEAIINCVMSRNNALVLMPTGGGKSLCYQLPSYFIK 485
Query: 96 -----------------------KKKKICLMTESSS------------------LKLLYV 114
+ I + SSS +K ++V
Sbjct: 486 GITVVVSPLVSLIQDQVSNLVETGMEAIAFYSGSSSEEAKQFYKESYQKEGKCTIKFVFV 545
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PE++ +SKSF L + Y+ + IDE HC S WGHDFR YQ LS+ +P +P
Sbjct: 546 TPERITQSKSFKEALNRYYENNNFGMVVIDEAHCISQWGHDFRDSYQKLSVFSQEYPGIP 605
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
IL LTATAT +V D+ L I + VV FNR NL Y VR K K +DE+ +++
Sbjct: 606 ILMLTATATERVKNDILLSLGINEAVVFSQSFNRKNLTYCVRPK---TKGVIDEIEEMIK 662
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------ 276
R+++ QSGIIY S K D+ +EL RG++ YHA +++
Sbjct: 663 RKYKGQSGIIYCLSQKNTMDVAQELNKRGIKSKYYHAGMDTKERTKVQKEWCDGEFNVIC 722
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
+IAFG+GIDKP+VRFVIHH L KS+E +YQ S
Sbjct: 723 ATIAFGMGIDKPDVRFVIHHSLPKSLEGYYQES 755
>gi|401412075|ref|XP_003885485.1| hypothetical protein NCLIV_058800 [Neospora caninum Liverpool]
gi|325119904|emb|CBZ55457.1| hypothetical protein NCLIV_058800 [Neospora caninum Liverpool]
Length = 962
Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 126/364 (34%), Positives = 187/364 (51%), Gaps = 64/364 (17%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YP 50
++PW+ + F + DFR NQ +N L +DA++IMPT +
Sbjct: 144 DFPWTPALEKAALRFFGIQDFRFNQREVMNTVLSSRDALLIMPTGGGKSLCFQLPALIHG 203
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINIALL-------------KKDAIIIM-------- 89
S + ++ +L +Q+AA+ L K +A ++
Sbjct: 204 ASSHLTLIVSPLLSLM---ADQVAALRALRLQAFYLSATSLKDEKDEASGVLKSLEGTSG 260
Query: 90 --PTGKLLKKKKICLMTESSSLK-----LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIA 142
T K K +K+ ++ S LYV+PE++AKSK M++L+K+Y A LA I
Sbjct: 261 CSQTQKRQKTEKVAAVSPDQSSDEPGAVFLYVTPERIAKSKKLMSQLEKIYAAKNLALIV 320
Query: 143 IDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVI 202
+DE HC S WGH FR DY+ L +LKT FP VP+L LTATAT V+ D++KML I V
Sbjct: 321 VDEAHCASQWGHSFRQDYRQLILLKTQFPRVPLLALTATATPPVVDDIKKMLHIPHSRVF 380
Query: 203 KAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR 262
++ NR NLFY V KP ++ + +AD + R F QSGI+Y S KE E L L++
Sbjct: 381 RSHTNRANLFYHVVHKPKTSEEQIRLIADFI-RAFNGQSGILYCLSRKEAEILCVALKHD 439
Query: 263 -GLRVSAYHAKLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSME 303
+ + YH L++N ++AFG+GI+K +VRFV+HH L KS++
Sbjct: 440 FQISCAFYHGDLDANSRLEIHRQWSAGYVSVVVATVAFGMGINKADVRFVVHHSLPKSVD 499
Query: 304 NFYQ 307
N+YQ
Sbjct: 500 NYYQ 503
>gi|303390001|ref|XP_003073232.1| ATP-dependent DNA helicase [Encephalitozoon intestinalis ATCC
50506]
gi|303302377|gb|ADM11872.1| ATP-dependent DNA helicase [Encephalitozoon intestinalis ATCC
50506]
Length = 762
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 123/326 (37%), Positives = 173/326 (53%), Gaps = 45/326 (13%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFN 64
L+ F + +FR NQ I L KD ++MPT S + V V+ +
Sbjct: 225 LREVFKMKEFRTNQREVIQACLSGKDVFVLMPTGGGKSICYQLPALVYEGVTIVVSPLLS 284
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS-----LKLLYVSPEKL 119
L +Q+ + LL+KD I+ +P L + + L+ E+ K+ YV+PE +
Sbjct: 285 LV---QDQI----LNLLQKD-ILALPINSNLSRTERRLVFEALGSDELICKIFYVTPELI 336
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
AKS F + + + G L R IDE HC S WGHDFRPDY+ L ++ +P VPI+ LT
Sbjct: 337 AKSGHFHEVVSGLVRRGRLKRFVIDEAHCVSQWGHDFRPDYKELGSIRRRYPSVPIIALT 396
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATAT KV LD+ + L I C K FNR NL YEVR K + + LD + + F +
Sbjct: 397 ATATKKVELDILENLGIRGCETFKMSFNRANLRYEVRAKTSTVE--LD-IVSFVQTHFPD 453
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAF 281
GIIY TS KECE + E+L+ + ++ + YHA L N +IAF
Sbjct: 454 CCGIIYCTSKKECEMISEKLK-KHMKTAFYHAGLSKNERNSVQEKWNKGEFKVIVATIAF 512
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GIDK +VRFVIH+C+ KS+E +YQ
Sbjct: 513 GMGIDKKDVRFVIHYCIPKSLEGYYQ 538
>gi|440794542|gb|ELR15702.1| ATPdependent DNA helicase, RecQ subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 621
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 117/337 (34%), Positives = 166/337 (49%), Gaps = 79/337 (23%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---------------- 92
+PW+D+V VLK+ FN FRPNQ IN L +DA +IMPTG
Sbjct: 112 FPWADKVDHVLKTVFNHEQFRPNQRKVINCVLSGRDAFVIMPTGAGKSLLYQLPGVISNG 171
Query: 93 ----------------KLLKKKKICLMTESSS--------------------------LK 110
L+KK + + SSS +K
Sbjct: 172 FTLVISPLLSLIQDQVSALRKKGVVAVELSSSRTPKEVSQMLKKRHWYTNAALAKDTNVK 231
Query: 111 LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170
L+V+PE++ KS F L++ LAR+ IDE HC S WG+DFRPD++ L +L+ F
Sbjct: 232 FLFVTPERVVKSTRFFAFLRQQVDQARLARVVIDECHCISQWGYDFRPDFKQLLVLRKEF 291
Query: 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA 230
P+VPIL LT++AT + +D + L +E+C FNRPNL Y V K ++
Sbjct: 292 PNVPILALTSSATNRCKVDTMRQLGLEECDFFTQSFNRPNLRYAVENKTKKTT---KKII 348
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN-------------- 276
+ ++ ++SGIIY S KECE + +L+ ++ + YHA L
Sbjct: 349 QFIKKKHNSESGIIYCLSKKECEAMARKLQAAKIQANFYHAGLSPAKREKVQRKWMAGEF 408
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
+IAFGLGIDK +VRFVIHH L +++E+FYQ S
Sbjct: 409 AVMVATIAFGLGIDKADVRFVIHHSLPRTIEDFYQES 445
>gi|237842165|ref|XP_002370380.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
gi|211968044|gb|EEB03240.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
gi|221502834|gb|EEE28548.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
Length = 1626
Score = 193 bits (491), Expect = 7e-47, Method: Composition-based stats.
Identities = 119/336 (35%), Positives = 175/336 (52%), Gaps = 41/336 (12%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
++P+S RV + K F TDFR QL AIN + +D ++MPT S
Sbjct: 625 DFPFSARVDRINKEVFGYTDFRGLQLGAINAVMSGRDCFLVMPTGGGKSLCYQLPAYALG 684
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE----SSSL 109
+ V+ L + L + + K D G++ K + L E S SL
Sbjct: 685 GLTLVISPLLALMGDQLRSLKNLGVEAAKID-------GEISKGDLLALYDELSQPSFSL 737
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169
++L +PE LA+S++ T L+ ++ G L+ + +DE HC WG DFR DY L LK
Sbjct: 738 RVLMATPEFLARSEALTTVLRSVHARGLLSLLVVDEAHCVCQWGEDFRADYLSLGRLKKT 797
Query: 170 FPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDEL 229
FPDVP+L LTA+A+ V +V+++L+I V + NRPNLF EVR K +++ D
Sbjct: 798 FPDVPLLALTASASPDVFSEVKRILRIPKSVDFRMSINRPNLFLEVREK--SRQTIYDIH 855
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------- 276
L S RN++GIIY SIK+CE + L + +R + YHAK+ S
Sbjct: 856 RLLSSPALRNEAGIIYCLSIKDCEVVASHLISLDIRAAPYHAKMASRRRQETQAAWMAGD 915
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFGLG+D+P+VRFV HH + S+E +YQ
Sbjct: 916 IAVIVSTVAFGLGVDRPDVRFVFHHSMPPSLERYYQ 951
>gi|452978196|gb|EME77960.1| hypothetical protein MYCFIDRAFT_216933 [Pseudocercospora fijiensis
CIRAD86]
Length = 1607
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 123/354 (34%), Positives = 173/354 (48%), Gaps = 63/354 (17%)
Query: 7 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLT 66
WS V VL+ F L FR NQL AIN L +D ++MPT S LT
Sbjct: 690 WSPDVGRVLRHVFKLKGFRKNQLEAINATLEGQDVFVLMPTGGGKS------------LT 737
Query: 67 DFRPNQLAAINIALLKKDAIIIMPTGKLLKKK---------KICLMTESSS--------- 108
P A + + I+I P L++ + + L+ +S
Sbjct: 738 YQLP---ALVPTGKTQGVTIVISPLLSLMQDQVEHLRKLGVQATLINSETSREERDLIMD 794
Query: 109 ----------LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRP 158
++LLYV+PE L KS+ + + +++ LARI IDE HC S WGHDFRP
Sbjct: 795 ALWDREPERMVQLLYVTPEMLGKSEKMLRTFEGLHRKRKLARIVIDEAHCVSQWGHDFRP 854
Query: 159 DYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIK 218
DY+ L ++ FP VP++ LTATAT V D L ++ C V + FNR NL Y V K
Sbjct: 855 DYKNLGEVRQRFPGVPVMALTATATEIVKSDTIHNLSMDGCAVFTSSFNRTNLSYSVLPK 914
Query: 219 PAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRG-LRVSAYHAKLES-- 275
P ++D + +A+++ + +GIIY S K CED+ L N ++ YHA ++S
Sbjct: 915 PKGKQD-VQSMAEVIKKDHAKDTGIIYCLSRKNCEDIAAALVNEHRIKAKHYHAGMDSIA 973
Query: 276 ----------------NVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDK NVRFVIHH + KS+E +YQ + G
Sbjct: 974 KADVQKEWQAGHVHVIVATIAFGMGIDKSNVRFVIHHSIPKSLEGYYQETGRAG 1027
>gi|261330758|emb|CBH13743.1| ATP-dependent DEAD/H DNA helicase recQ, putative [Trypanosoma
brucei gambiense DAL972]
Length = 1548
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 124/344 (36%), Positives = 177/344 (51%), Gaps = 45/344 (13%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------------YPW 51
+YPWS+ +R + F L +FR QL +N + +D +++PT P
Sbjct: 444 HYPWSEELRRTMVDVFGLHNFRFLQLEIMNACMANRDVFVLLPTGGGKSLCYQLPALLPN 503
Query: 52 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLK- 110
+V V+ +L +Q+ A+ L A+ TG+ L + L E SS +
Sbjct: 504 PAKVTIVISPLVSLIQ---DQVYALRAYDLPAMAL----TGQTLDAPRRDLFNEWSSGRI 556
Query: 111 ---LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
L+YV+PE +S F+ L+ + G L R +DE HC S WGHDFRPDY+ L+ LK
Sbjct: 557 VCTLVYVTPEYFGRSDHFVQSLKSLENRGLLNRFVVDEAHCVSQWGHDFRPDYRKLAALK 616
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV-RIKPAAQKDCL 226
FP VPI LTATAT V D+ + L + + V K FNR NL Y V RI A
Sbjct: 617 HHFPQVPISALTATATDTVQRDIIQTLGLHNAVSFKGSFNRHNLKYSVQRITSKAGS--- 673
Query: 227 DELADLMSRRFRNQS-GIIYTTSIKECEDLREELRNRGLRVSAYHAKL-ESN-------- 276
+A+++ + F +S GI+Y S K+CE++ LR G+R S YHA E N
Sbjct: 674 -TVAEIIKKNFPPRSCGIVYCISKKDCEEMAAVLRKEGIRASYYHADASEKNEKQEQWTR 732
Query: 277 -------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GI+KP+VRFVIH + KS+E +YQ S G
Sbjct: 733 DELQVLCATVAFGMGINKPDVRFVIHAAMPKSIEGYYQESGRAG 776
>gi|146413823|ref|XP_001482882.1| hypothetical protein PGUG_04837 [Meyerozyma guilliermondii ATCC
6260]
Length = 1176
Score = 193 bits (491), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 111/339 (32%), Positives = 165/339 (48%), Gaps = 74/339 (21%)
Query: 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT-------------- 91
P P+ V S+L+S FNL FRPNQL A+ L KD ++MPT
Sbjct: 499 PGSEPFIKEVYSILQSTFNLLSFRPNQLEAVTATLQGKDTFVLMPTGGGKSLCYQLPALV 558
Query: 92 ---------------------------------------GKLLKKKKICLMTESSSLKLL 112
G ++K+ + S L L+
Sbjct: 559 TSGRTRGTTIVISPLISLMQDQVQHLLDKNIRAGMVSSKGTASERKQTVELFRSGQLDLV 618
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
Y+SPE + S + ++ LARI +DE HC SSWGHDFRPDY+ +++ K +P+
Sbjct: 619 YLSPEMVNASLQIQNIISRLNSNQQLARIVVDEAHCVSSWGHDFRPDYKGMNMFKQQYPN 678
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
+P++ LTATA KV +D+ L + + V++K FNR NLFYE++ K + L+ + D
Sbjct: 679 IPLMALTATANEKVRMDIIHHLNMTEPVLLKQSFNRTNLFYEIKRKNG---NYLEWIRDY 735
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
+ ++ + +GIIY S + CE E+L GL+ S YHA +
Sbjct: 736 IVAKYAHNTGIIYCHSKQLCEQTSEKLNMWGLKTSFYHAGMGPTERFDIQKKWQDGSVKI 795
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH + +S+E +YQ + G
Sbjct: 796 ICATIAFGMGIDKPDVRFVIHLFIPRSLEGYYQETGRAG 834
>gi|221505512|gb|EEE31157.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
Length = 1753
Score = 193 bits (490), Expect = 1e-46, Method: Composition-based stats.
Identities = 118/334 (35%), Positives = 175/334 (52%), Gaps = 34/334 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--------DYPW--SDR 54
+ W + VR+ + F FRP Q A IN L ++D ++MPT P S
Sbjct: 721 FEWDEAVRACNEKVFGNRAFRPMQRAIINAVLSQRDVFVMMPTGGGKSLCFQLPAIVSGG 780
Query: 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYV 114
V V+ +L + Q+ +N+ A K + + L + + LL V
Sbjct: 781 VTVVVMPLVSLITDQLEQMQLLNVGCRAFAANQPWEEQKAVYDE---LRRGTGEIHLLLV 837
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PEKL S + L ++ + GCL R AIDE HC S WG+DFRPDY+ L L+ +P+VP
Sbjct: 838 TPEKLKGSSLLRSCLHELNREGCLDRFAIDEAHCVSQWGNDFRPDYRQLQSLREEYPNVP 897
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
++ LTATAT V+ DV L++ + VV + F+RPNL YEVR P + ++++A +
Sbjct: 898 LVALTATATKAVLQDVVTQLRMREPVVFQGSFDRPNLRYEVR--PKVPRRIVEDIAATIK 955
Query: 235 RRFRNQSGIIYTTSIKECEDLREEL-RNRGLRVSAYHAKLESN----------------- 276
F SGI+Y S +ECE + E L R+ G+ YHA+L++
Sbjct: 956 TEFHGLSGIVYCLSRRECERVAEGLQRHAGISAGFYHAQLDAEKREEIQRDWMNDDIKVI 1015
Query: 277 -VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
++AFG+GI+K +VRFVIH + K +ENFYQ S
Sbjct: 1016 VATLAFGMGINKRDVRFVIHCAMPKCLENFYQES 1049
>gi|237838631|ref|XP_002368613.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
gi|211966277|gb|EEB01473.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
Length = 1753
Score = 193 bits (490), Expect = 1e-46, Method: Composition-based stats.
Identities = 118/334 (35%), Positives = 175/334 (52%), Gaps = 34/334 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--------DYPW--SDR 54
+ W + VR+ + F FRP Q A IN L ++D ++MPT P S
Sbjct: 721 FEWDEAVRACNEKVFGNRAFRPMQRAIINAVLSQRDVFVMMPTGGGKSLCFQLPAIVSGG 780
Query: 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYV 114
V V+ +L + Q+ +N+ A K + + L + + LL V
Sbjct: 781 VTVVVMPLVSLITDQLEQMQLLNVGCRAFAANQPWEEQKAVYDE---LRRGTGEIHLLLV 837
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PEKL S + L ++ + GCL R AIDE HC S WG+DFRPDY+ L L+ +P+VP
Sbjct: 838 TPEKLKGSSLLRSCLHELNREGCLDRFAIDEAHCVSQWGNDFRPDYRQLQSLREEYPNVP 897
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
++ LTATAT V+ DV L++ + VV + F+RPNL YEVR P + ++++A +
Sbjct: 898 LVALTATATKAVLQDVVTQLRMREPVVFQGSFDRPNLRYEVR--PKVPRRIVEDIAATIK 955
Query: 235 RRFRNQSGIIYTTSIKECEDLREEL-RNRGLRVSAYHAKLESN----------------- 276
F SGI+Y S +ECE + E L R+ G+ YHA+L++
Sbjct: 956 TEFHGLSGIVYCLSRRECERVAEGLQRHAGISAGFYHAQLDAEKREEIQRDWMNDDIKVI 1015
Query: 277 -VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
++AFG+GI+K +VRFVIH + K +ENFYQ S
Sbjct: 1016 VATLAFGMGINKRDVRFVIHCAMPKCLENFYQES 1049
>gi|194901954|ref|XP_001980516.1| GG17198 [Drosophila erecta]
gi|190652219|gb|EDV49474.1| GG17198 [Drosophila erecta]
Length = 1457
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 159/334 (47%), Gaps = 71/334 (21%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---------------- 92
+ S R+ L F L FRPNQL IN LL D ++MPTG
Sbjct: 689 FEHSTRLMHGLSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEG 748
Query: 93 ----------------KLLKKKKIC-------------------LMTESSSLKLLYVSPE 117
L IC L ++ +KLLYV+PE
Sbjct: 749 VTIVISPLKSLIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPE 808
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
K++ S F L + ++R IDE HC S WGHDFRPDY+ L +LK FP+VP +
Sbjct: 809 KISSSARFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIA 868
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT +V LD+ L +++C + FNR NL Y R+ P LD+++ + +
Sbjct: 869 LTATATPRVRLDILAQLNLKNCKWFLSSFNRSNLRY--RVLPKKGASTLDDISRYIRSKP 926
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSI 279
+ SGIIY S KEC++ + + G+R AYHA L +I
Sbjct: 927 AHFSGIIYCLSRKECDETSKRMCKDGVRAVAYHAGLTDTEREGRQKDWLTGKIRVICATI 986
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
AFG+GIDKP+VRFV+H+ L KS+E +YQ + G
Sbjct: 987 AFGMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAG 1020
>gi|413920232|gb|AFW60164.1| hypothetical protein ZEAMMB73_604033 [Zea mays]
Length = 618
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 165/327 (50%), Gaps = 40/327 (12%)
Query: 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YPWSDRVRSVLKSKFNL 65
F FRP Q A A+ +D I+MPT +P V S L S
Sbjct: 214 FGNKGFRPLQYEACRAAMDNQDCFILMPTGGGKSLCYQLPATLHPGVTVVVSPLLSLIQD 273
Query: 66 TDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSF 125
A+ A L + + + L + KLLYV+PE++ + SF
Sbjct: 274 QIVALTYRFAVPAAFLNSQQTSAQASAVIQE-----LRCGKPAFKLLYVTPERIVTNYSF 328
Query: 126 MTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTK 185
M L+ + + G LAR IDE HC S WGHDFRPDY+ L LK FP VPI+ LTATAT
Sbjct: 329 METLRGLDQRGLLARFVIDEAHCVSQWGHDFRPDYRGLGCLKQNFPRVPIMALTATATES 388
Query: 186 VMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIY 245
V DV L+I + VV+K F+R NL YEV K K +L DL+ RF N+SGI+Y
Sbjct: 389 VRKDVLGALRIPNAVVLKRSFDRLNLNYEVIGKT---KTFQKQLGDLLKERFMNESGIVY 445
Query: 246 TTSIKECEDLREELRNR-GLRVSAYHAKLESN------------------VSIAFGLGID 286
S EC D + LR + ++ + YHA L + +IAFG+GID
Sbjct: 446 CLSKNECADTAKFLREKYKIKCAHYHASLAARQRTSVQEKWHSGEVKVICATIAFGMGID 505
Query: 287 KPNVRFVIHHCLSKSMENFYQVSIAFG 313
KP+VRFVIH+ LSKS+E++YQ S G
Sbjct: 506 KPDVRFVIHNTLSKSIESYYQESGRAG 532
>gi|363748979|ref|XP_003644707.1| hypothetical protein Ecym_2138 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888340|gb|AET37890.1| Hypothetical protein Ecym_2138 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1394
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/335 (32%), Positives = 166/335 (49%), Gaps = 74/335 (22%)
Query: 50 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK-------------- 93
PW+ V L++ F L +FRPNQL AIN L +D ++MPT GK
Sbjct: 613 PWTAEVFHKLQNIFKLPNFRPNQLEAINATLGGQDVFVLMPTGGGKSLCYQLPAIVKSGN 672
Query: 94 ----------------------LLKKKKICLMTESSS---------------LKLLYVSP 116
L K K + + + L L+Y+SP
Sbjct: 673 TSGTTIVVSPLISLMQDQVEHLLAKNIKASMFSSKGTAEQRRQTFNLFINGLLDLVYISP 732
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
E + S +QK+Y+ L+RI +DE HC S+WGHDFRPDY+ L K +P++P++
Sbjct: 733 EMICASVQCKNAIQKLYRDHKLSRIVVDEAHCVSNWGHDFRPDYKELKFFKEEYPNIPMM 792
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATA+ +V +D+ LQ+ V +K FNR NL+Y+V K K+ +DE+ + + +
Sbjct: 793 ALTATASEQVRMDIIHNLQLRQPVFLKQSFNRTNLYYQVLRK---SKNSMDEICETIKTK 849
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
FR Q+GI+Y S CE + G++ + YHA ++ + +
Sbjct: 850 FRGQTGIVYCHSKNSCEQTAATMVRSGVKCAYYHAGMDPDERLQVQQGWQSNKVQVICAT 909
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFV H + +++E +YQ + G
Sbjct: 910 VAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAG 944
>gi|328864030|gb|EGG13129.1| hypothetical protein MELLADRAFT_46354 [Melampsora larici-populina
98AG31]
Length = 498
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 125/334 (37%), Positives = 170/334 (50%), Gaps = 34/334 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRSV 58
+PWS V L F L +R NQL AIN L + ++MPT Y VRS
Sbjct: 3 HPWSKDVAKALTKIFKLKAWRRNQLDAINATLSGEHCFVLMPTGGGKSLCYQLPAVVRSG 62
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMP-TGKLLKKKKIC----LMTESSSLKLLY 113
+ L I L + I P TG + K++K L ++ SL LLY
Sbjct: 63 KTHGVTIVVSPLLSLITDQIQSLCEKEIGAAPWTGTMSKQEKAAVTSDLRSKDPSLCLLY 122
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLS-ILKTMFPD 172
V+PE + +S L+ + K +AR IDE HC S WGHDFRPDY L L F
Sbjct: 123 VTPESMMQSGELKGILKDLQKRSLIARFVIDEAHCLSQWGHDFRPDYILLGKHLALDFSG 182
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
+PIL LTATA V D+ K LQI CV + FNRPNL YEVR K K+ +++L +
Sbjct: 183 IPILALTATANGVVQQDIIKNLQIGSCVKLTQSFNRPNLRYEVRNKT---KEAMNDLIRI 239
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRG-LRVSAYHAKLESN--------------- 276
++ + GI+Y S ++CE + +L +RG +R YHA + +N
Sbjct: 240 ITVDHAGKCGIVYCFSKRDCEQVASDLVSRGNVRAHHYHAGMSTNDRQRIQQDWQRGVLQ 299
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFV+H+ L S+E +YQ
Sbjct: 300 VLCATIAFGMGIDKPDVRFVVHYSLPSSLEGYYQ 333
>gi|115486585|ref|NP_001068436.1| Os11g0672700 [Oryza sativa Japonica Group]
gi|77552472|gb|ABA95269.1| ATP-dependent DNA helicase, RecQ family protein, expressed [Oryza
sativa Japonica Group]
gi|113645658|dbj|BAF28799.1| Os11g0672700 [Oryza sativa Japonica Group]
gi|125535256|gb|EAY81804.1| hypothetical protein OsI_36975 [Oryza sativa Indica Group]
gi|125568785|gb|EAZ10300.1| hypothetical protein OsJ_00135 [Oryza sativa Japonica Group]
Length = 588
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 125/322 (38%), Positives = 168/322 (52%), Gaps = 30/322 (9%)
Query: 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-----LTDFRPN 71
F FRP Q A A+ D ++MPT S ++ + L L +
Sbjct: 182 FGNKSFRPLQYEACRAAVSNMDTFVLMPTGGGKSLCYQLPATLHPGVTVVVCPLLSLIED 241
Query: 72 QLAAINIALLKKDAIIIMPTGKLLKKKKIC-LMTESSSLKLLYVSPEKLAKSKSFMTKLQ 130
Q+ A+N A + I L + S KLLYV+PE++A + SF+ L
Sbjct: 242 QIVALNFKFAIPAAFLNSQQTPSQSSAVIQELRSGKPSFKLLYVTPERMAGNSSFIGILI 301
Query: 131 KMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDV 190
+++ G LAR IDE HC S WGHDFRPDY+ L LK FP VPI+ LTATAT V D+
Sbjct: 302 GLHQRGLLARFVIDEAHCVSQWGHDFRPDYRGLGCLKQNFPRVPIMALTATATASVCKDI 361
Query: 191 QKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIK 250
L+I + V+K F+R NL YEV K + +L DL+ RF N SGI+Y S
Sbjct: 362 LSTLRIPNATVLKRSFDRTNLNYEVIGKTKTPQ---KQLGDLLKERFMNMSGIVYCLSKN 418
Query: 251 ECEDLREELRNR-GLRVSAYHAKL----ESNV--------------SIAFGLGIDKPNVR 291
EC D + LR + ++ + YHA L SNV +IAFG+GIDKP+VR
Sbjct: 419 ECADTAKFLREKYKIKCAHYHAGLAARQRSNVQGKWHSGEVKVICATIAFGMGIDKPDVR 478
Query: 292 FVIHHCLSKSMENFYQVSIAFG 313
FVIH+ +SKS+E++YQ S G
Sbjct: 479 FVIHNTMSKSIESYYQESGRAG 500
>gi|392575674|gb|EIW68807.1| hypothetical protein TREMEDRAFT_12143, partial [Tremella
mesenterica DSM 1558]
Length = 663
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 118/346 (34%), Positives = 174/346 (50%), Gaps = 87/346 (25%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLLKKK-------- 98
+PWS + + L+ F L+ FR Q IN A+ ++ + +MPT GK L +
Sbjct: 78 FPWSPAIATTLRQVFKLSGFRLCQEGVINAAMDDRNIVCVMPTGGGKSLTYQLPAMMGRG 137
Query: 99 ------------------------KICLMTESSS---------------------LKLLY 113
+ +MT +++ L+L Y
Sbjct: 138 VTVVISPLLALIWDQVRSLKDLGVECAMMTGATTKAEQNQIYEKIEGGSSKGGRELRLCY 197
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
V+PEK+AKSK FM+ L+K G L +DE HCCS GHDFRPDY+ LS+LKT+FP V
Sbjct: 198 VTPEKVAKSKRFMSALEKANAMGRLPERHVDEAHCCSQLGHDFRPDYKKLSVLKTLFPRV 257
Query: 174 PILGLTATATTKVMLDVQKMLQI-----------EDCVVIKAPFNRPNLFYEVRIKPAAQ 222
PI +TAT +TK + D+ K+LQ+ V AP +R NL Y+V KP++
Sbjct: 258 PIQAVTATLSTKTLPDLLKILQLPPVCDGNKANSTGTVFFSAPLHRANLHYKVLPKPSSA 317
Query: 223 KDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELR--NRG-LRVSAYHAKLESN--- 276
K ++ + + + R+ SGIIY S K+ E + +ELR +RG ++ YHA ++
Sbjct: 318 KAAIERIGNWIQRKHPGDSGIIYCLSKKDTETVADELREWSRGQIKTGVYHAGVDDAAKE 377
Query: 277 ---------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFGLGIDK +VR+VIHH +SKS++ +YQ
Sbjct: 378 GIHLDWRKGRINCICATIAFGLGIDKGDVRYVIHHSMSKSLDGYYQ 423
>gi|443726019|gb|ELU13361.1| hypothetical protein CAPTEDRAFT_91032 [Capitella teleta]
Length = 579
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 175/332 (52%), Gaps = 40/332 (12%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YPWSDRVRSVLK 60
+ ++ F L +FR NQL A+N ALL D I+MPT P V S L+
Sbjct: 4 IFRTIFGLNEFRHNQLQAVNAALLGHDCFILMPTGGGKSLCYQLPALVTPGVTLVISPLR 63
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
S L + +L ++++ + + + + + L + +KLLY++PEK+
Sbjct: 64 S---LIQDQVQRLCSLDVPATHLSSDV---SPAQANQTFMLLHQKIPPVKLLYLTPEKIV 117
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
S + L+ +Y+ LAR IDE HC S WGHDFRPDY+ L+ L+ FP VP++ +TA
Sbjct: 118 ASAKLNSVLENLYRRKMLARFIIDEAHCVSQWGHDFRPDYKKLNGLRERFPGVPMIAVTA 177
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TAT +V D+ L + FNR NL YEV P K ++ +++ RF NQ
Sbjct: 178 TATPRVRKDILHQLGMNSPKWFMQSFNRVNLKYEVL--PKKPKSLTSDVINMIHSRFSNQ 235
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKL----ESNV---------------SIAF 281
SGI+Y S +EC+ + +L G++ AYHA L S+V +IAF
Sbjct: 236 SGIVYCLSRRECDTVSTDLTKAGIQAKAYHAGLTDAQRSSVQQKWLNEDGCKVVCATIAF 295
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
G+GIDKP+VRFV+H+ L KS+E +YQ S G
Sbjct: 296 GMGIDKPDVRFVVHYSLPKSIEGYYQESGRAG 327
>gi|24646066|ref|NP_524319.2| bloom syndrome helicase ortholog [Drosophila melanogaster]
gi|17366114|sp|Q9VGI8.1|BLM_DROME RecName: Full=Bloom syndrome protein homolog; Short=Dmblm; AltName:
Full=Mutagen-sensitive protein 309; AltName: Full=RecQ
helicase homolog
gi|7299503|gb|AAF54691.1| bloom syndrome helicase ortholog [Drosophila melanogaster]
Length = 1487
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/334 (34%), Positives = 161/334 (48%), Gaps = 71/334 (21%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---------------- 92
+ S R+ L F L FRPNQL IN LL D ++MPTG
Sbjct: 719 FEHSTRLMHGLSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEG 778
Query: 93 ----------------KLLKKKKIC-------------------LMTESSSLKLLYVSPE 117
L IC L ++ +KLLYV+PE
Sbjct: 779 VTIVISPLKSLIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPE 838
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
K++ S F L + ++R IDE HC S WGHDFRPDY+ L +LK FP+VP +
Sbjct: 839 KISSSARFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIA 898
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT +V LD+ L +++C + FNR NL Y R+ P LD+++ + +
Sbjct: 899 LTATATPRVRLDILAQLNLKNCKWFLSSFNRSNLRY--RVLPKKGVSTLDDISRYIRSKP 956
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSI 279
++ SGIIY S KEC++ +++ G+R +YHA L ++
Sbjct: 957 QHFSGIIYCLSRKECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATV 1016
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
AFG+GIDKP+VRFV+H+ L KS+E +YQ + G
Sbjct: 1017 AFGMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAG 1050
>gi|353234730|emb|CCA66752.1| related to RecQ family helicase RecQL1 [Piriformospora indica DSM
11827]
Length = 888
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 126/364 (34%), Positives = 185/364 (50%), Gaps = 55/364 (15%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDY-------------P 50
++ WS ++ +K F FR Q N ++ +D I +MPT P
Sbjct: 106 SFDWSGELKKRMKRVFGFDSFRLCQEGICNASMDNRDVIAVMPTGGGKSLTYQLPALLCP 165
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDA-------IIIMPTGKLLKKKKICLM 103
+ V S L S ++ A I +L A + T K ++I +
Sbjct: 166 GTTLVISPLISLITDQILHLHE-AGIEACMLTGSASKEEQRSTLQRMTPKATNGRRISAV 224
Query: 104 --TESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQ 161
+KL+YV+PEK+AKSKSF++ LQKM KAG LARI IDE HC S GHDFRPDYQ
Sbjct: 225 DGQADGEIKLVYVTPEKIAKSKSFLSVLQKMEKAGTLARIVIDEAHCVSQLGHDFRPDYQ 284
Query: 162 YLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDC-----------VVIKAPFNRPN 210
LSIL+ +FP+VPIL L+AT V+ D+ K+L+++ C V +P R N
Sbjct: 285 KLSILRQLFPNVPILALSATCPPNVLKDLLKVLKMDACVDGNNAPAKGTVYFSSPLYREN 344
Query: 211 LFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLRE---ELRNRGLRVS 267
L Y+V KPA+ ++ + + + ++++GI+Y S K+ E + E N ++
Sbjct: 345 LHYKVVPKPASSAAVIETMCNYILENHKDETGIVYCLSKKDAETVAAGLVETSNGKIKTG 404
Query: 268 AYHA---------------KLESNV---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
YHA K E V +IAFGLGIDK +VRF++HH +SKS++ +YQ +
Sbjct: 405 VYHADIPDARKEELHRRWRKGEVKVVCATIAFGLGIDKGDVRFILHHSMSKSLDGYYQET 464
Query: 310 IAFG 313
G
Sbjct: 465 GRAG 468
>gi|5281068|gb|AAD41441.1|U92536_1 RECQ helicase homolog [Drosophila melanogaster]
Length = 1487
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/334 (34%), Positives = 161/334 (48%), Gaps = 71/334 (21%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---------------- 92
+ S R+ L F L FRPNQL IN LL D ++MPTG
Sbjct: 719 FEHSTRLMHGLSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEG 778
Query: 93 ----------------KLLKKKKIC-------------------LMTESSSLKLLYVSPE 117
L IC L ++ +KLLYV+PE
Sbjct: 779 VTIVISPLKSLIFDQINKLASLDICAESLSGEQKMADVMAIYRDLESQPPMVKLLYVTPE 838
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
K++ S F L + ++R IDE HC S WGHDFRPDY+ L +LK FP+VP +
Sbjct: 839 KISSSARFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIA 898
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT +V LD+ L +++C + FNR NL Y R+ P LD+++ + +
Sbjct: 899 LTATATPRVRLDILAQLNLKNCKWFLSSFNRSNLRY--RVLPKKGVSTLDDISRYIRSKP 956
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSI 279
++ SGIIY S KEC++ +++ G+R +YHA L ++
Sbjct: 957 QHFSGIIYCLSRKECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATV 1016
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
AFG+GIDKP+VRFV+H+ L KS+E +YQ + G
Sbjct: 1017 AFGMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAG 1050
>gi|395747150|ref|XP_002825880.2| PREDICTED: LOW QUALITY PROTEIN: Bloom syndrome protein [Pongo
abelii]
Length = 1398
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 173/344 (50%), Gaps = 52/344 (15%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YP 50
++P + + + KF L +FR NQL AIN ALL +D I+MPT P
Sbjct: 637 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 696
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLK 110
V S L+S +Q+ A + K D+ +L KK I +K
Sbjct: 697 GVTIVISPLRS------LIVDQIPATYLTGDKTDSEATNIYLQLSKKDPI--------IK 742
Query: 111 LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170
LLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+ F
Sbjct: 743 LLYVTPEKICASNRLVSTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKF 802
Query: 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK--DCLDE 228
P VP++ LTATA +V D+ L+I V FNR NL Y V K + DCL
Sbjct: 803 PSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL-- 860
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
+ + + SGIIY S +EC+ + + L+ GL AYHA L +
Sbjct: 861 --EWIRKHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQ 918
Query: 277 -------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L KSME +YQ S G
Sbjct: 919 DDCQVICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAG 962
>gi|380797039|gb|AFE70395.1| Bloom syndrome protein, partial [Macaca mulatta]
Length = 786
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 176/346 (50%), Gaps = 48/346 (13%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YP 50
++P + + + KF L +FR NQL AIN ALL +D I+MPT P
Sbjct: 17 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 76
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINI--ALLKKDAIIIMPTGKLLKKKKICLMTESSS 108
V S L+S L + +L +++I L D T L+ L +
Sbjct: 77 GVTIVISPLRS---LIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQ-----LSKKDPI 128
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+
Sbjct: 129 IKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQ 188
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK--DCL 226
FP VP++ LTATA +V D+ L+I V FNR NL Y V K + DCL
Sbjct: 189 KFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL 248
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------- 276
+ + + + SGIIY S +EC+ + + L+ GL AYHA L +
Sbjct: 249 ----EWIRKHYPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWI 304
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L KSME +YQ S G
Sbjct: 305 NQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAG 350
>gi|410907219|ref|XP_003967089.1| PREDICTED: Bloom syndrome protein homolog [Takifugu rubripes]
Length = 1392
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 171/349 (48%), Gaps = 54/349 (15%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YP 50
N+ +S + + +F L FR NQL AIN L +D ++MPT P
Sbjct: 624 NFHYSQEMMKIFHKRFGLHQFRYNQLEAINATLQGEDTFVLMPTGGGKSLCYQLPACVSP 683
Query: 51 WSDRVRSVLKS-------KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLM 103
V S LKS K D L+ L +++A I +L +K+ I
Sbjct: 684 GVTVVISPLKSLIVDQIQKLTTLDIPATSLSG---DLGEREAGRIY--MQLSRKEPI--- 735
Query: 104 TESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL 163
+KLLYV+PEK++ S ++ LQ +Y+ G LAR IDE HC S WGHDFRPDY+ L
Sbjct: 736 -----VKLLYVTPEKVSASNKLISALQNLYERGLLARFVIDEAHCVSQWGHDFRPDYKKL 790
Query: 164 SILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK 223
L+ FP VP++ LTATAT +V D+ L + V FNR NL Y V P K
Sbjct: 791 HELRKKFPQVPMMALTATATPRVQKDIHNQLNMNRPQVFTMSFNRTNLKYAVL--PKKPK 848
Query: 224 DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------- 276
++ + + + SGIIY S +C+ + E L+ GL +YHA L
Sbjct: 849 KVDEDCISWIKKHYPRDSGIIYCLSRNDCDAMAESLQRAGLLALSYHAGLSDGNREYVQT 908
Query: 277 ------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VR+VIH L KS+E +YQ S G
Sbjct: 909 KWINQDGCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAG 957
>gi|403215321|emb|CCK69820.1| hypothetical protein KNAG_0D00680 [Kazachstania naganishii CBS
8797]
Length = 881
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 119/347 (34%), Positives = 168/347 (48%), Gaps = 75/347 (21%)
Query: 45 MPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----------L 94
PT Y W+D + L++ F L FRPNQL AIN L KD ++MPTG L
Sbjct: 211 QPT-YRWTDELYYHLQATFKLKGFRPNQLTAINSVLSGKDVFVLMPTGGGKSLCYQLPAL 269
Query: 95 LKKKK-----------ICLMTE--------------------------------SSSLKL 111
+K + I LM + + L L
Sbjct: 270 VKSGETRGTTVVISPLISLMQDQVEHLLDLNIRACMFNSKNSAAQRNEVFNLLINGDLDL 329
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
+Y+SPE + S L +YK LARI IDE HC S+WGHDFRPDY+ LS K +P
Sbjct: 330 IYMSPEMIKASAQCQRALGTLYKNRQLARIVIDEAHCVSNWGHDFRPDYKQLSYFKMQYP 389
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
++P++ LTATA +V D+ L+++ V ++ FNR NLFY+ P K + + +
Sbjct: 390 EIPVIALTATANKQVQSDIINNLRLKSAVQLRQSFNRDNLFYQS--IPKNNKTSIPLIVN 447
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--------------- 276
+ FR QSGIIY S CE L L+ G+ YHA +++
Sbjct: 448 SLKTVFRGQSGIIYCHSKIACEKLTALLKKEGINCRFYHAGMDTTDRELVQRGWQANQIQ 507
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
+IAFG+GIDK +VRFV H+ + +++EN+YQ + G GK S+
Sbjct: 508 VIIATIAFGMGIDKSDVRFVFHYTVPRTLENYYQETGRAGRDGKFSY 554
>gi|396081744|gb|AFN83359.1| ATP-dependent DNA helicase [Encephalitozoon romaleae SJ-2008]
Length = 765
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 123/326 (37%), Positives = 174/326 (53%), Gaps = 45/326 (13%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFN 64
L+ F + +FR NQ I L KD ++MPT S + + V+ +
Sbjct: 228 LREVFKMKEFRMNQREVIQACLSGKDVFVLMPTGGGKSICYQLPALVYEGITIVVSPLLS 287
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE---SSSL--KLLYVSPEKL 119
L +Q+ LL+KD I+ +P L + + L+ E S L K+ YV+PE +
Sbjct: 288 LV---QDQIR----NLLQKD-ILALPINSNLSRNERSLVFEALRSDELICKIFYVTPELI 339
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
AKS F + ++ + G L R IDE HC S WGHDFRPDY+ L ++ +P VPI+ LT
Sbjct: 340 AKSGHFHDVVSELVRRGRLKRFVIDEAHCVSQWGHDFRPDYKELGSIRIRYPSVPIIALT 399
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATAT KV LD+ + L I C K FNR NL YEVR K + + LD + + F +
Sbjct: 400 ATATKKVELDILENLGIRGCETFKMSFNRSNLRYEVRAKTSTVE--LD-IVSFVQTHFPD 456
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAF 281
GIIY TS KECE + ++L+ + ++ + YHA L N +IAF
Sbjct: 457 CCGIIYCTSKKECEMISDKLK-KYMKTAFYHAGLSKNERNSVQEKWNKGEFKVIVATIAF 515
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GIDK +VRFVIH+C+ KS+E +YQ
Sbjct: 516 GMGIDKKDVRFVIHYCIPKSLEGYYQ 541
>gi|402875293|ref|XP_003901445.1| PREDICTED: Bloom syndrome protein-like [Papio anubis]
Length = 1042
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 176/346 (50%), Gaps = 48/346 (13%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YP 50
++P + + + KF L +FR NQL AIN ALL +D I+MPT P
Sbjct: 273 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 332
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINI--ALLKKDAIIIMPTGKLLKKKKICLMTESSS 108
V S L+S L + +L +++I L D T L+ L +
Sbjct: 333 GVTIVISPLRS---LIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQ-----LSKKDPI 384
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+
Sbjct: 385 IKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQ 444
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK--DCL 226
FP VP++ LTATA +V D+ L+I V FNR NL Y V K + DCL
Sbjct: 445 KFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL 504
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------- 276
+ + + + SGIIY S +EC+ + + L+ GL AYHA L +
Sbjct: 505 ----EWIRKHYPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWI 560
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L KSME +YQ S G
Sbjct: 561 NQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAG 606
>gi|157278040|ref|NP_001098120.1| Bloom syndrome helicase [Oryzias latipes]
gi|140083401|gb|ABO84823.1| Bloom syndrome helicase [Oryzias latipes]
Length = 1393
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 172/344 (50%), Gaps = 44/344 (12%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YP 50
N+P S + + +F L FR NQL AIN ALL +DA ++MPT P
Sbjct: 627 NFPHSQEMMKIFHKRFGLHQFRFNQLEAINAALLGEDAFVLMPTGGGKSLCYQLPACVSP 686
Query: 51 WSDRVRSVLKSKF--NLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS 108
V S LKS + + A +++ K D+ +L +K +
Sbjct: 687 GVTVVVSPLKSLIVDQIQKLTTLDIPATSLSGDKSDSEAGRIYMQLSRKDPL-------- 738
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KLLYV+PEK++ S ++ LQ +Y+ G LAR IDE HC S WGHDFRPD++ L L+
Sbjct: 739 IKLLYVTPEKVSASGRLISALQNLYERGLLARFIIDEAHCVSQWGHDFRPDFKRLHELRQ 798
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
FP V ++ LTATAT +V D+ L + V FNR NL Y V P K ++
Sbjct: 799 KFPSVRMMALTATATPRVQKDILNQLNMMRPQVFTMSFNRSNLKYSVL--PKKPKKVDED 856
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
+ + + SGI+Y S +C+ + E L+ G++ +YHA L
Sbjct: 857 CIGWIKKHYPRDSGIVYCLSRNDCDAMAESLKRAGIQALSYHAGLSDGDREYVQSKWINQ 916
Query: 277 -------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VR+VIH L KS+E +YQ S G
Sbjct: 917 DGCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAG 960
>gi|302678065|ref|XP_003028715.1| hypothetical protein SCHCODRAFT_70092 [Schizophyllum commune H4-8]
gi|300102404|gb|EFI93812.1| hypothetical protein SCHCODRAFT_70092 [Schizophyllum commune H4-8]
Length = 788
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 125/363 (34%), Positives = 181/363 (49%), Gaps = 50/363 (13%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YP 50
++PW +R+ +K F + +FR Q AIN ++ +D +++MPT P
Sbjct: 67 DFPWMSALRAKMKEVFGIREFRLAQKKAINASMDGRDIVLVMPTGGGKSLTYQLPALMTP 126
Query: 51 WSDRVRSVLKSKFN--LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS 108
V S L + + + + A+ I T +L L +
Sbjct: 127 GCTLVISPLVALISDQILHLEEAGVRAVKITAATPKEQSREITQQLTAMANRSLPRGTPE 186
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KL YV+PE++AKSK+F++ LQ++ K LARI IDE HC S GHDFRPDY+ L +L++
Sbjct: 187 IKLCYVTPERIAKSKTFLSLLQRLAKGAMLARIVIDEAHCVSQMGHDFRPDYEKLHVLRS 246
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQI-----------EDCVVIKAPFNRPNLFYEVRI 217
+FP+VPI+ L+AT +V+ D+ K LQ+ + V +P R NL Y V
Sbjct: 247 LFPNVPIIALSATCPPQVLKDLTKTLQLKPVINHTKNRDDGTVYFSSPLYRANLHYAVVP 306
Query: 218 KPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRG---LRVSAYHAKLE 274
KPA+ LD + D + SGIIY S +E E + E LR + +R YHA
Sbjct: 307 KPASADALLDLMKDFILSHHPGASGIIYCRSKQEAESVAEGLRKKSEGRIRTGVYHADKP 366
Query: 275 SN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-G 315
N +IAFGLGIDK +VRFV+HH SK+++ FYQ S G G
Sbjct: 367 DNEKENLHVQWRSGRIQVVCATIAFGLGIDKGDVRFVLHH--SKTLDGFYQESGRAGRDG 424
Query: 316 KHS 318
K S
Sbjct: 425 KDS 427
>gi|195329754|ref|XP_002031575.1| GM26077 [Drosophila sechellia]
gi|194120518|gb|EDW42561.1| GM26077 [Drosophila sechellia]
Length = 1268
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 114/334 (34%), Positives = 160/334 (47%), Gaps = 71/334 (21%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---------------- 92
+ S R+ L F L FRPNQL IN LL D ++MPTG
Sbjct: 500 FEHSTRLMHGLSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEG 559
Query: 93 ----------------KLLKKKKIC-------------------LMTESSSLKLLYVSPE 117
L IC L ++ +KLLYV+PE
Sbjct: 560 VTIVISPLKSLIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPE 619
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
K++ S F L + ++R IDE HC S WGHDFRPDY+ L +LK FP+VP +
Sbjct: 620 KISSSARFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIA 679
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT +V LD+ L +++C + FNR NL Y R+ P LD+++ + +
Sbjct: 680 LTATATPRVRLDILAQLNLKNCKWFLSSFNRSNLRY--RVLPKKGVSTLDDISRYIRSKP 737
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSI 279
+ SGIIY S KEC++ +++ G+R +YHA L ++
Sbjct: 738 AHFSGIIYCLSRKECDETSKKMCKDGIRAVSYHAGLTDTERESRQKDWLTGKIRVICATV 797
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
AFG+GIDKP+VRFV+H+ L KS+E +YQ + G
Sbjct: 798 AFGMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAG 831
>gi|109082375|ref|XP_001097543.1| PREDICTED: Bloom syndrome protein [Macaca mulatta]
Length = 1416
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 176/346 (50%), Gaps = 48/346 (13%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YP 50
++P + + + KF L +FR NQL AIN ALL +D I+MPT P
Sbjct: 647 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 706
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINI--ALLKKDAIIIMPTGKLLKKKKICLMTESSS 108
V S L+S L + +L +++I L D T L+ L +
Sbjct: 707 GVTIVISPLRS---LIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQ-----LSKKDPI 758
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+
Sbjct: 759 IKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQ 818
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK--DCL 226
FP VP++ LTATA +V D+ L+I V FNR NL Y V K + DCL
Sbjct: 819 KFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL 878
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------- 276
+ + + + SGIIY S +EC+ + + L+ GL AYHA L +
Sbjct: 879 ----EWIRKHYPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWI 934
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L KSME +YQ S G
Sbjct: 935 NQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAG 980
>gi|390598243|gb|EIN07641.1| ATP-dependent DNA helicase [Punctularia strigosozonata HHB-11173
SS5]
Length = 521
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 116/323 (35%), Positives = 164/323 (50%), Gaps = 78/323 (24%)
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG-------------------------- 92
LKS F L FR +QL AIN A+ KD ++MPTG
Sbjct: 4 LKSVFGLHRFRDHQLDAINAAMAGKDVFVLMPTGGGKSLCYQLPAVCTGGKGRRVSFVVS 63
Query: 93 ----------KLLKKKKICLMTESSS-------------------LKLLYVSPEKLAKSK 123
K LK K + ++T S+ +++Y++PEKL +
Sbjct: 64 PLVALIKDQSKALKDKGVDVVTLGSADSDAHRTGAMSRLTGSGRKPQIVYLTPEKL-NTH 122
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
L K+YK G +AR +DE HC +SWG +FR Y L+ L+ +PDVPI+ LTATA
Sbjct: 123 YMRGILDKLYKDGHIARFVMDEAHCITSWGRNFRGSYANLNWLRDTYPDVPIMALTATAK 182
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
+ ++++ L++ DCV IK+PFNRPNL YE+R K + + ++A + N+SGI
Sbjct: 183 AEDIINIHNHLKLRDCVFIKSPFNRPNLNYEIRQKGSK---VVADIAAYIKSTHPNESGI 239
Query: 244 IYTTSIKECEDLREELR-NRGLRVSAYHAKLESN------------------VSIAFGLG 284
IY S +CE++ +ELR N L +HA + +IAFG+G
Sbjct: 240 IYCLSRNKCEEIAQELRDNYALSARHFHAAMSDEDKHNAQKAWQEGEGEIIVATIAFGMG 299
Query: 285 IDKPNVRFVIHHCLSKSMENFYQ 307
IDKP+VRFVIHH L KSME +YQ
Sbjct: 300 IDKPDVRFVIHHHLPKSMEGYYQ 322
>gi|403258502|ref|XP_003921799.1| PREDICTED: Bloom syndrome protein [Saimiri boliviensis boliviensis]
Length = 1499
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 176/346 (50%), Gaps = 48/346 (13%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YP 50
++P + + + KF L +FR NQL AIN ALL +D I+MPT P
Sbjct: 647 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 706
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINI--ALLKKDAIIIMPTGKLLKKKKICLMTESSS 108
V S L+S L + +L +++I L D T L+ L +
Sbjct: 707 GVTIVISPLRS---LIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQ-----LSKKDPI 758
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+
Sbjct: 759 IKLLYVTPEKICASNRLVSTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQ 818
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK--DCL 226
FP VP++ LTATA +V D+ L+I V FNR NL Y V K + DCL
Sbjct: 819 KFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL 878
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------- 276
+ + + + SGIIY S +EC+ + + L+ GL AYHA L +
Sbjct: 879 ----EWIRKHYPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWI 934
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L KSME +YQ S G
Sbjct: 935 NQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAG 980
>gi|383420697|gb|AFH33562.1| Bloom syndrome protein [Macaca mulatta]
Length = 1416
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 176/346 (50%), Gaps = 48/346 (13%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YP 50
++P + + + KF L +FR NQL AIN ALL +D I+MPT P
Sbjct: 647 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 706
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINI--ALLKKDAIIIMPTGKLLKKKKICLMTESSS 108
V S L+S L + +L +++I L D T L+ L +
Sbjct: 707 GVTIVISPLRS---LIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQ-----LSKKDPI 758
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+
Sbjct: 759 IKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQ 818
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK--DCL 226
FP VP++ LTATA +V D+ L+I V FNR NL Y V K + DCL
Sbjct: 819 KFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL 878
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------- 276
+ + + + SGIIY S +EC+ + + L+ GL AYHA L +
Sbjct: 879 ----EWIRKHYPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWI 934
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L KSME +YQ S G
Sbjct: 935 NQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAG 980
>gi|296204062|ref|XP_002749167.1| PREDICTED: Bloom syndrome protein isoform 2 [Callithrix jacchus]
Length = 1415
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 176/346 (50%), Gaps = 48/346 (13%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YP 50
++P + + + KF L +FR NQL AIN ALL +D I+MPT P
Sbjct: 647 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 706
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINI--ALLKKDAIIIMPTGKLLKKKKICLMTESSS 108
V S L+S L + +L +++I L D T L+ L +
Sbjct: 707 GVTIVISPLRS---LIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQ-----LSKKDPI 758
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+
Sbjct: 759 IKLLYVTPEKICASNRLISTLENLYERRLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQ 818
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK--DCL 226
FP VP++ LTATA +V D+ L+I V FNR NL Y V K + DCL
Sbjct: 819 KFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL 878
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------- 276
+ + + + SGIIY S +EC+ + + L+ GL AYHA L +
Sbjct: 879 ----EWIRKHYPYDSGIIYCLSRRECDTMADTLQRDGLSALAYHAGLSDSARDEIQQKWI 934
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L KSME +YQ S G
Sbjct: 935 NQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAG 980
>gi|405951020|gb|EKC18968.1| ATP-dependent DNA helicase Q1 [Crassostrea gigas]
Length = 338
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 101/227 (44%), Positives = 142/227 (62%), Gaps = 17/227 (7%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--------DYP--WSD 53
++ WS ++ +KS F +++ RP QL +N+ + KD I+IMPT P S
Sbjct: 98 DFQWSAALKQKMKSVFGISELRPMQLQTMNVTMSGKDCILIMPTGGGKSLCFQLPALLSK 157
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKI--CLMTESSSLKL 111
V V+ +L + + L N+ DA+++ + + + + +++++KL
Sbjct: 158 GVTLVVSPLVSLMEDQVIALENYNV-----DAVMLNASTDRNRVTAVQNAMTDKTATMKL 212
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEKLAKSK FM KL+KMY G +R+ IDEVHCCS WGHDFRPDY++L I+K FP
Sbjct: 213 LYVTPEKLAKSKRFMAKLEKMYAMGRFSRLVIDEVHCCSQWGHDFRPDYKFLGIMKRQFP 272
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIK 218
+VPILGLTATAT V+ DV+K+L I C + KA FNRPNLFYEV K
Sbjct: 273 EVPILGLTATATKNVIEDVKKILNIPVCTLFKASFNRPNLFYEVNTK 319
>gi|355692996|gb|EHH27599.1| Bloom syndrome protein [Macaca mulatta]
Length = 1416
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 176/346 (50%), Gaps = 48/346 (13%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YP 50
++P + + + KF L +FR NQL AIN ALL +D I+MPT P
Sbjct: 647 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 706
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINI--ALLKKDAIIIMPTGKLLKKKKICLMTESSS 108
V S L+S L + +L +++I L D T L+ L +
Sbjct: 707 GVTIVISPLRS---LIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQ-----LSKKDPI 758
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+
Sbjct: 759 IKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQ 818
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK--DCL 226
FP VP++ LTATA +V D+ L+I V FNR NL Y V K + DCL
Sbjct: 819 KFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL 878
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------- 276
+ + + + SGIIY S +EC+ + + L+ GL AYHA L +
Sbjct: 879 ----EWIRKHYPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWI 934
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L KSME +YQ S G
Sbjct: 935 NQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAG 980
>gi|118489987|gb|ABK96790.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 617
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 121/330 (36%), Positives = 174/330 (52%), Gaps = 38/330 (11%)
Query: 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-----LTDFRPN 71
F FRP Q A + K+D ++MPT S ++ + LK L +
Sbjct: 211 FGNKTFRPLQHQACKATVAKQDCFVLMPTGGGKSLCYQLPATLKPGVTVVISPLLSLIQD 270
Query: 72 QLAAINI-----ALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFM 126
Q+ +N+ A +L++ L + S KLLYV+PE++A + +F+
Sbjct: 271 QIITLNLKFGIRATFLNSQQTSAQAAAILQE----LRKDKPSCKLLYVTPERIAGNPAFL 326
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186
L+ ++ G LA +DE HC S WGHDFRPDY+ L LK FP VP++ LTATAT V
Sbjct: 327 EILKCLHLKGQLAGFVVDEAHCVSQWGHDFRPDYKRLGCLKQNFPVVPVMALTATATHSV 386
Query: 187 MLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYT 246
D+ K L+I +V++ F+RPNL YEV K K+ L +L DL+ RF+NQ GI+Y
Sbjct: 387 REDILKTLRIPGALVLETSFDRPNLKYEVIGKT---KESLKQLGDLLRDRFKNQCGIVYC 443
Query: 247 TSIKECEDLREELRNR-GLRVSAYHAKLESN------------------VSIAFGLGIDK 287
S EC ++ + L + ++ YHA L + +IAFG+GIDK
Sbjct: 444 LSKNECVEVSKFLNEKCKIKAVYYHAGLGARQRVDVQRKWHTGEVHIVCATIAFGMGIDK 503
Query: 288 PNVRFVIHHCLSKSMENFYQVSIAFGLGKH 317
P+VRFVIH+ LSKS+E++YQ S G H
Sbjct: 504 PDVRFVIHNTLSKSIESYYQESGRAGRDSH 533
>gi|449329518|gb|AGE95789.1| ATP-dependent DNA helicase [Encephalitozoon cuniculi]
Length = 766
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 119/318 (37%), Positives = 165/318 (51%), Gaps = 29/318 (9%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDFRPNQ 72
L+ F + +FR NQ I L KD ++MPT S ++ +++ +
Sbjct: 229 LREVFKMKEFRTNQREVIQACLSGKDVFVLMPTGGGKSICYQLPALVYDGITIVVSPLLS 288
Query: 73 LAAINIALLKKDAIIIMPTGKLLKKKK-----ICLMTESSSLKLLYVSPEKLAKSKSFMT 127
L I L + I+ +P L + + L + K+ YV+PE +AKS F
Sbjct: 289 LVQDQIRNLLQKGILALPINSNLSRAERDLVFQVLGGDELICKIFYVTPELIAKSGHFHD 348
Query: 128 KLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVM 187
L + G L R IDE HC S WGHDFRPDY+ L ++ +P VPI+ LTATAT KV
Sbjct: 349 VLSGLVCRGRLKRFVIDEAHCVSQWGHDFRPDYKELGSMRARYPSVPIIALTATATQKVE 408
Query: 188 LDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTT 247
+D+ + L I C K FNR NL YEVR K + + LD +A + F + GIIY T
Sbjct: 409 MDILENLGIRGCETFKMSFNRSNLRYEVRAKTSTVE--LD-IASFVQTHFPDCCGIIYCT 465
Query: 248 SIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDKPN 289
S KECE + E+LR + + + YHA L N +IAFG+GIDK +
Sbjct: 466 SKKECEMISEKLR-KYMGTAFYHAGLSKNERNSVQEKWNRGEFKVIVATIAFGMGIDKKD 524
Query: 290 VRFVIHHCLSKSMENFYQ 307
VRFVIH+C+ KS+E +YQ
Sbjct: 525 VRFVIHYCIPKSLEGYYQ 542
>gi|224123710|ref|XP_002330189.1| predicted protein [Populus trichocarpa]
gi|222871645|gb|EEF08776.1| predicted protein [Populus trichocarpa]
Length = 588
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 121/330 (36%), Positives = 174/330 (52%), Gaps = 38/330 (11%)
Query: 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-----LTDFRPN 71
F FRP Q A + K+D ++MPT S ++ + LK L +
Sbjct: 182 FGNKTFRPLQHQACKATVAKQDCFVLMPTGGGKSLCYQLPATLKPGVTVVISPLLSLIQD 241
Query: 72 QLAAINI-----ALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFM 126
Q+ +N+ A +L++ L + S KLLYV+PE++A + +F+
Sbjct: 242 QIITLNLKFGIPATFLNSQQTSAQAAAILQE----LRHDKPSCKLLYVTPERIAGNPAFL 297
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186
L+ ++ G LA +DE HC S WGHDFRPDY+ L LK FP VP++ LTATAT V
Sbjct: 298 EILKCLHLKGQLAGFVVDEAHCVSQWGHDFRPDYKRLGCLKQNFPVVPVMALTATATHSV 357
Query: 187 MLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYT 246
D+ K L+I +V++ F+RPNL YEV K K+ L +L DL+ RF+NQ GI+Y
Sbjct: 358 REDILKTLRIPGALVLETSFDRPNLKYEVIGKT---KESLKQLGDLLRDRFKNQCGIVYC 414
Query: 247 TSIKECEDLREELRNR-GLRVSAYHAKLESN------------------VSIAFGLGIDK 287
S EC ++ + L + ++ YHA L + +IAFG+GIDK
Sbjct: 415 LSKNECVEVSKFLNEKCKIKAVYYHAGLGARQRVDVQRKWHTGEVHIVCATIAFGMGIDK 474
Query: 288 PNVRFVIHHCLSKSMENFYQVSIAFGLGKH 317
P+VRFVIH+ LSKS+E++YQ S G H
Sbjct: 475 PDVRFVIHNTLSKSIESYYQESGRAGRDSH 504
>gi|300708803|ref|XP_002996574.1| hypothetical protein NCER_100319 [Nosema ceranae BRL01]
gi|239605886|gb|EEQ82903.1| hypothetical protein NCER_100319 [Nosema ceranae BRL01]
Length = 529
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 123/329 (37%), Positives = 181/329 (55%), Gaps = 28/329 (8%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDFRPN 71
+L++ F L FR NQ + I L KKD ++MPT S ++ +++ + +
Sbjct: 189 ILRNVFKLEKFRTNQESIIKSILEKKDVFVLMPTGGGKSLCYQIPALIDNGVTIIISPLL 248
Query: 72 QLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSL---KLLYVSPEKLAKSKSFMTK 128
L I+ L + I+ +P L + ++ E+ +L K+ YV+PE L + + +K
Sbjct: 249 SLVHDQISNLLNNNILALPFNSTLNASERRMVLENMTLGVVKMFYVTPESLCANYNLESK 308
Query: 129 LQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVML 188
L+++ + L+R +DE HC S WGHDFRPDY + +K M+P VPI+ LTATAT KV L
Sbjct: 309 LKELLRMNKLSRFVVDEAHCVSQWGHDFRPDYIEMKKIKEMYPSVPIVALTATATPKVEL 368
Query: 189 DVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTS 248
D+ LQI D VV K FNR NL Y V KP + LD + + ++N+ GIIY TS
Sbjct: 369 DIMSNLQIRDAVVYKQSFNRENLKYFV--KPKTRSVELD-IVTFIQSHYQNECGIIYCTS 425
Query: 249 IKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDKPNV 290
KECE + ++L N+ L+ + YHA L +IAFG+GIDK +V
Sbjct: 426 KKECEMISDKL-NKHLKTAFYHAGLTKKERMSIQSMWNDNRFKIIVATIAFGMGIDKKDV 484
Query: 291 RFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
RFVIH+ + KS+E +YQ + G GK S
Sbjct: 485 RFVIHYSMPKSLEGYYQETGRAGRDGKES 513
>gi|429327654|gb|AFZ79414.1| ATP-dependent DNA helicase, RecQ family member protein [Babesia
equi]
Length = 809
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 121/354 (34%), Positives = 181/354 (51%), Gaps = 61/354 (17%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFN 64
+PW+ V + + F FRPNQL AIN L D +++PT S
Sbjct: 149 FPWTKLVHEINRDVFKNVAFRPNQLEAINCLLDGNDTFVVIPTGGGKSLCF--------- 199
Query: 65 LTDFRPNQLAAINIALLKKD--AIIIMP----------------------TGKLL--KKK 98
QL A+ ++K+ ++IMP G+L ++K
Sbjct: 200 -------QLPAVVDHYMQKNCLTVVIMPLISLIHDQMKRLKNLGIGCRALVGELTWSERK 252
Query: 99 KIC--LMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDF 156
I + + S+ +L+++PE L SK+ + L ++ KA L+R +DEVHC S WG+DF
Sbjct: 253 GIYDDISENTESVSILFLTPEGLTTSKNLLDLLHQLDKARRLSRFVLDEVHCVSQWGNDF 312
Query: 157 RPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVR 216
RP+Y + ++K FP +P+ LTATAT VM DV K L++ + ++ K+ FNR NL YEV
Sbjct: 313 RPNYGAMGLIKHDFPHLPVCALTATATESVMRDVIKKLRLRNPIIFKSDFNRKNLRYEVI 372
Query: 217 IKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELR------------NRGL 264
K K ++ L +L++ RF +Q GI+Y S +E ED+ L N
Sbjct: 373 KKDKQSKRAVNGLIELITNRFMDQCGIVYCLSCREAEDVANALSSHVTSCYYHAQINMVT 432
Query: 265 RVSAYHAKLESNVSI-----AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
R YH +E V++ AFG+GIDKP+VRFVIH + KS+EN++Q S G
Sbjct: 433 RNRIYHDWIEGRVNVIVATLAFGMGIDKPDVRFVIHFSMPKSLENYFQESGRAG 486
>gi|301106430|ref|XP_002902298.1| bloom syndrome protein [Phytophthora infestans T30-4]
gi|262098918|gb|EEY56970.1| bloom syndrome protein [Phytophthora infestans T30-4]
Length = 1022
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 117/342 (34%), Positives = 177/342 (51%), Gaps = 46/342 (13%)
Query: 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVL 59
R + VL+ F FRP+Q + A +D ++MPT S D V V+
Sbjct: 207 RAKRVLRDVFGHNAFRPSQERTVMEAFSGRDVFVLMPTGGGKSLCFQLPACIDDGVTIVI 266
Query: 60 KSKFNLTDFRPNQLAAINIAL--LKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPE 117
+L + QL A+++ + LK D ++ + L + +K+LYV+PE
Sbjct: 267 SPLVSLIQDQVQQLEALDVGVANLKGDQDYATEQRPIISE----LFSNQIRIKMLYVTPE 322
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
K+A S + + K G LAR IDE HC S WGHDFR DY L L+T FP VPI+
Sbjct: 323 KIASSGMLSNLFKSLEKRGLLARFVIDEAHCISQWGHDFRKDYLNLGTLRTKFPSVPIMA 382
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATA ++ D+ K L++ + + ++ FNRPNL Y+VR K + + E+AD + R+
Sbjct: 383 LTATANSQTEADIVKNLKLRNPFITRSSFNRPNLTYDVRKKTSK---FMSEIADFV-RKH 438
Query: 238 RNQSGIIYTTSIKECEDLREEL--------RNRGLRVSAYHAKLESN------------- 276
+ SGIIY S K+CE E+L + ++S YHA LE+
Sbjct: 439 IDDSGIIYCLSKKDCEQTAEKLIKALGFEHTRKASQISFYHAGLEAGDRAYRHHEWSKGK 498
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GI+KP+VR+VIHH + +S+ ++YQ + G
Sbjct: 499 IKLICATVAFGMGINKPDVRYVIHHTIPQSVTHYYQEAGRAG 540
>gi|414868214|tpg|DAA46771.1| TPA: hypothetical protein ZEAMMB73_430838 [Zea mays]
Length = 265
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 90/169 (53%), Positives = 118/169 (69%), Gaps = 1/169 (0%)
Query: 107 SSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
LK+LYV+PEK++KSK FM+KL+K + AG L+ IAIDE HCCS WGHDFRPDY+ L IL
Sbjct: 79 GELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGIL 138
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
K FP VP++ LTATAT+KV +D+ +ML I C+ + NRPNLFY+V K K +
Sbjct: 139 KIQFPSVPMIALTATATSKVQMDLMEMLHIPRCIKFVSTVNRPNLFYKVSEKSPVGKVVI 198
Query: 227 DELADLMSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 274
DE+ +S + N+SGIIY S KECE + +ELR RG+ YHA ++
Sbjct: 199 DEITKFISESYPNNESGIIYCFSRKECEQVAKELRERGISADYYHADMD 247
>gi|401827051|ref|XP_003887618.1| ATP-dependent DNA helicase RecQ [Encephalitozoon hellem ATCC 50504]
gi|392998624|gb|AFM98637.1| ATP-dependent DNA helicase RecQ [Encephalitozoon hellem ATCC 50504]
Length = 766
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 123/326 (37%), Positives = 172/326 (52%), Gaps = 45/326 (13%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFN 64
L+ F + +FR NQ I L KD ++MPT S + + V+ +
Sbjct: 229 LREVFKMKEFRMNQREVIQACLSGKDVFVLMPTGGGKSICYQLPALVYEGITIVVSPLLS 288
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE---SSSL--KLLYVSPEKL 119
L +Q+ LL+KD I+ +P L + + L+ E S L K+ YV+PE +
Sbjct: 289 LV---QDQIR----NLLEKD-ILALPINSNLSRTERSLVFEVLGSEELICKIFYVTPELI 340
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
AKS F + + + G L R IDE HC S WGHDFRPDY+ L ++ +P VPI+ LT
Sbjct: 341 AKSGHFHDVVSGLVRRGRLKRFVIDEAHCVSQWGHDFRPDYKELGSIRARYPSVPIIALT 400
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATAT KV LD+ + L I C K FNR NL YEVR K + + LD + + F +
Sbjct: 401 ATATKKVELDILENLGIRGCETFKMSFNRSNLRYEVRAKTSTVE--LD-IVSFVQTHFPD 457
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAF 281
GIIY TS KECE + + L+ + ++ + YHA L N +IAF
Sbjct: 458 CCGIIYCTSKKECEMISDRLK-KYMKTAFYHAGLSKNERNSVQEKWNKGEFKVIVATIAF 516
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GIDK +VRFVIH+C+ KS+E +YQ
Sbjct: 517 GMGIDKKDVRFVIHYCIPKSLEGYYQ 542
>gi|225444694|ref|XP_002277754.1| PREDICTED: ATP-dependent DNA helicase Q-like 3-like [Vitis
vinifera]
Length = 730
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 127/336 (37%), Positives = 180/336 (53%), Gaps = 34/336 (10%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKF-----NLT 66
+L+ F +FR QL AI L +D +MPT S ++ ++ K L
Sbjct: 27 LLRWHFGHAEFRGRQLEAIEAILSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVCPLI 86
Query: 67 DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFM 126
NQ+ A+ + + + T K+ K L + SL+LLYV+PE +A + FM
Sbjct: 87 ALMENQVMALKEKGIAAEFLSSTQTTKVRDKIHEDLQSGKPSLRLLYVTPELIA-TPGFM 145
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186
++L K++ G L IAIDE HC SSWGHDFRP Y+ LS L+ PDVPIL LTATA KV
Sbjct: 146 SRLTKIHARGLLNLIAIDEAHCISSWGHDFRPSYRKLSSLRNHLPDVPILALTATAVPKV 205
Query: 187 MLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFR---NQSGI 243
DV + L +++ +V+K+ FNRPN++YEVR KD LD++ +S+ + N GI
Sbjct: 206 QKDVIESLCLQNPLVLKSSFNRPNIYYEVRY-----KDLLDDVYADLSKLLKSCGNVCGI 260
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHA----KLESNV--------------SIAFGLGI 285
+Y C++L L G+ +AYHA KL S+V ++AFG+GI
Sbjct: 261 VYCLERTTCDELSAHLSKNGISSAAYHAGLNNKLRSSVLDDWISSKIQVVVATVAFGMGI 320
Query: 286 DKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRS 321
D+ +VR V H + KSME FYQ S G + RS
Sbjct: 321 DRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSRS 356
>gi|195501810|ref|XP_002097953.1| GE10090 [Drosophila yakuba]
gi|194184054|gb|EDW97665.1| GE10090 [Drosophila yakuba]
Length = 1490
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 160/334 (47%), Gaps = 71/334 (21%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---------------- 92
+ S R+ L F L FRPNQL IN LL D ++MPTG
Sbjct: 722 FEHSTRLMHGLSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEG 781
Query: 93 ----------------KLLKKKKIC-------------------LMTESSSLKLLYVSPE 117
L IC L ++ +KLLYV+PE
Sbjct: 782 VTIVISPLKSLIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPE 841
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
K++ S F L + ++R IDE HC S WGHDFRPDY+ L +LK FP+VP +
Sbjct: 842 KISSSARFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIA 901
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT +V LD+ L +++C + FNR NL Y V P LD+++ + +
Sbjct: 902 LTATATPRVRLDILAQLNLKNCKWFLSSFNRSNLRYMVL--PKKGTSTLDDISRYIRSKP 959
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSI 279
+ SGIIY S KEC++ +++ G+R AYHA L + +I
Sbjct: 960 AHFSGIIYCLSRKECDETSKKMCKDGVRSVAYHAGLTDSEREGRQKDWLTGKIRVICATI 1019
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
AFG+GIDKP+VRFV+H+ L KS+E +YQ + G
Sbjct: 1020 AFGMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAG 1053
>gi|148236484|ref|NP_001079095.1| Bloom syndrome protein homolog [Xenopus laevis]
gi|17366056|sp|Q9DEY9.1|BLM_XENLA RecName: Full=Bloom syndrome protein homolog; Short=xBLM; AltName:
Full=RecQ helicase homolog
gi|11120568|gb|AAG30928.1|AF307841_1 Bloom's syndrome-like protein [Xenopus laevis]
Length = 1364
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 124/358 (34%), Positives = 172/358 (48%), Gaps = 72/358 (20%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------- 52
N+P S + + KF L FR NQL AIN L +D I+MPT S
Sbjct: 600 NFPHSKEMMKIFHKKFGLHRFRTNQLEAINACLCGEDCFILMPTGGGKSLCYQLPGCISP 659
Query: 53 --------------DRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
D+V+ + + + + D + A+I + L KKD II
Sbjct: 660 GVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDAEAASIYLQLSKKDPII------- 712
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ ++ +Y+ LAR IDE HC S WGH
Sbjct: 713 ---------------KLLYVTPEKVCASTRLISTMENLYERQLLARFVIDEAHCVSQWGH 757
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFRPDY+ L++L+ F VP++ LTATA +V D+ L++ + FNR NL YE
Sbjct: 758 DFRPDYKRLNVLRQKFQSVPMMALTATANPRVKKDILNQLKMTKPQIFTMSFNRDNLKYE 817
Query: 215 VRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL- 273
V P K + + + + N SGIIY S EC+ + + L+ GL AYHA L
Sbjct: 818 VL--PKKPKRVALDCVEWIKKHHPNDSGIIYCLSRHECDTMADTLQKEGLAALAYHAGLA 875
Query: 274 ESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+SN +IAFG+GIDKP+VR+VIH L KS+E +YQ S G
Sbjct: 876 DSNRDYVQHKWINQDDCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAG 933
>gi|156085174|ref|XP_001610070.1| ATP-dependent DNA helicase, RecQ family protein [Babesia bovis]
gi|154797322|gb|EDO06502.1| ATP-dependent DNA helicase, RecQ family protein [Babesia bovis]
Length = 832
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/335 (33%), Positives = 175/335 (52%), Gaps = 35/335 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------------YPWS 52
Y W+D V + + F FRP QL AIN L K+D ++MPT Y
Sbjct: 166 YEWTDAVHRINREVFKNPGFRPTQLEAINCILSKRDTFVVMPTGGGKSLCFQLPVVYDGM 225
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAII--IMPTGKLLKKKKICLMTESSSLK 110
R V L +Q+ +N + +A++ I + + + + I E S +
Sbjct: 226 LRTGGVTVVVMPLVSLIQDQIKRLNTLGIPCNALVGEISYSDREVVFEDIRSRGEGSCV- 284
Query: 111 LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170
L+V+PE++ SK+ + + + L+R IDE HC S WG+DFRPDY+ + + K F
Sbjct: 285 -LFVTPERITTSKAVLQVFRNLESQNRLSRFVIDEAHCVSEWGNDFRPDYKAMGLFKHEF 343
Query: 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA 230
P+VP+ LTATAT +V+ DV L++++ V+K+ FNRPNL YEV K L +L
Sbjct: 344 PNVPVCALTATATPQVVADVCAELRLKEPTVLKSNFNRPNLRYEVLPKDRNWDKSLTQLV 403
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------- 277
L++ RF+ GI+Y S E E + E L ++V+ YHA++ +
Sbjct: 404 QLINSRFKGLCGIVYCLSCNEVERVTEAL-GTSMKVAPYHAQMNMALRTSYYDQWMSGSV 462
Query: 278 -----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GIDK +VRFV+H + KS+EN++Q
Sbjct: 463 DVMVATLAFGMGIDKSDVRFVVHFSIPKSIENYFQ 497
>gi|410261436|gb|JAA18684.1| Bloom syndrome, RecQ helicase-like [Pan troglodytes]
Length = 1417
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 175/346 (50%), Gaps = 48/346 (13%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YP 50
++P + + + KF L +FR NQL AIN ALL +D I+MPT P
Sbjct: 648 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 707
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINI--ALLKKDAIIIMPTGKLLKKKKICLMTESSS 108
V S L+S L + +L +++I L D T L+ L +
Sbjct: 708 GVTVVISPLRS---LIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQ-----LSKKDPI 759
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+
Sbjct: 760 IKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQ 819
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK--DCL 226
FP VP++ LTATA +V D+ L+I V FNR NL Y V K + DCL
Sbjct: 820 KFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL 879
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------- 276
+ + + SGIIY S +EC+ + + L+ GL AYHA L +
Sbjct: 880 ----EWIRKHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWI 935
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L KSME +YQ S G
Sbjct: 936 NQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAG 981
>gi|397472473|ref|XP_003807768.1| PREDICTED: Bloom syndrome protein isoform 1 [Pan paniscus]
gi|397472475|ref|XP_003807769.1| PREDICTED: Bloom syndrome protein isoform 2 [Pan paniscus]
Length = 1417
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 175/346 (50%), Gaps = 48/346 (13%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YP 50
++P + + + KF L +FR NQL AIN ALL +D I+MPT P
Sbjct: 648 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 707
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINI--ALLKKDAIIIMPTGKLLKKKKICLMTESSS 108
V S L+S L + +L +++I L D T L+ L +
Sbjct: 708 GVTVVISPLRS---LIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQ-----LSKKDPI 759
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+
Sbjct: 760 IKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQ 819
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK--DCL 226
FP VP++ LTATA +V D+ L+I V FNR NL Y V K + DCL
Sbjct: 820 KFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL 879
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------- 276
+ + + SGIIY S +EC+ + + L+ GL AYHA L +
Sbjct: 880 ----EWIRKHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWI 935
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L KSME +YQ S G
Sbjct: 936 NQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAG 981
>gi|410346341|gb|JAA40688.1| Bloom syndrome, RecQ helicase-like [Pan troglodytes]
Length = 1417
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 175/346 (50%), Gaps = 48/346 (13%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YP 50
++P + + + KF L +FR NQL AIN ALL +D I+MPT P
Sbjct: 648 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 707
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINI--ALLKKDAIIIMPTGKLLKKKKICLMTESSS 108
V S L+S L + +L +++I L D T L+ L +
Sbjct: 708 GVTVVISPLRS---LIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQ-----LSKKDPI 759
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+
Sbjct: 760 IKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQ 819
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK--DCL 226
FP VP++ LTATA +V D+ L+I V FNR NL Y V K + DCL
Sbjct: 820 KFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL 879
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------- 276
+ + + SGIIY S +EC+ + + L+ GL AYHA L +
Sbjct: 880 ----EWIRKHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWI 935
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L KSME +YQ S G
Sbjct: 936 NQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAG 981
>gi|114658901|ref|XP_510594.2| PREDICTED: Bloom syndrome protein isoform 2 [Pan troglodytes]
gi|332844655|ref|XP_003314898.1| PREDICTED: Bloom syndrome protein isoform 1 [Pan troglodytes]
Length = 1417
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 175/346 (50%), Gaps = 48/346 (13%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YP 50
++P + + + KF L +FR NQL AIN ALL +D I+MPT P
Sbjct: 648 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 707
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINI--ALLKKDAIIIMPTGKLLKKKKICLMTESSS 108
V S L+S L + +L +++I L D T L+ L +
Sbjct: 708 GVTVVISPLRS---LIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQ-----LSKKDPI 759
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+
Sbjct: 760 IKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQ 819
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK--DCL 226
FP VP++ LTATA +V D+ L+I V FNR NL Y V K + DCL
Sbjct: 820 KFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL 879
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------- 276
+ + + SGIIY S +EC+ + + L+ GL AYHA L +
Sbjct: 880 ----EWIRKHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWI 935
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L KSME +YQ S G
Sbjct: 936 NQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAG 981
>gi|302851980|ref|XP_002957512.1| hypothetical protein VOLCADRAFT_68317 [Volvox carteri f.
nagariensis]
gi|300257154|gb|EFJ41406.1| hypothetical protein VOLCADRAFT_68317 [Volvox carteri f.
nagariensis]
Length = 544
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/319 (38%), Positives = 171/319 (53%), Gaps = 41/319 (12%)
Query: 27 NQLAAINIALLKKDAIIIMPTDYPWSDRVR-SVLKSKFNLTDFRPNQLAAIN--IALLKK 83
+Q A IN L +D ++MPT S + L S +T ++ I I L++
Sbjct: 37 SQEAIINATLDGRDVFVLMPTGGGKSLCYQLPALMSDSGVTVVVSPLVSLIQDQIHHLRE 96
Query: 84 DAIIIMPTGKLLKKKKICLMTES-----SSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCL 138
I G + + + ES S ++LL+V+PEK+A+S + + L + AG L
Sbjct: 97 AGIGTAHLGGSQEWSEAAGVMESIRSGASDVRLLFVTPEKVARSDALVRLLDGLVAAGRL 156
Query: 139 ARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIED 198
R +DE HC S WGHDFRPDY+ L++ K+ +P VP+L LTATAT +V DV+ L+I D
Sbjct: 157 DRCVVDEAHCVSQWGHDFRPDYRELAVFKSKWPRVPLLALTATATPRVQADVRLQLRIPD 216
Query: 199 CVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF------RNQSGIIYTTSIKEC 252
CVV K+ FNRPNL YEV K K +++L L+ RF R Q GI+Y S EC
Sbjct: 217 CVVFKSSFNRPNLRYEVVRK---SKAIVEDLKTLLLERFVDRVKKRVQCGIVYCQSRGEC 273
Query: 253 EDLREELR------NRGLRVSAYHAKLESN------------------VSIAFGLGIDKP 288
E + EELR R L + YHA L + +IAFG+GI+KP
Sbjct: 274 ERVAEELRKVRQPNGRMLNAAHYHAALSHDEREQVQTRWSNDEVQVIVATIAFGMGINKP 333
Query: 289 NVRFVIHHCLSKSMENFYQ 307
+VRFVIH L KS+E ++Q
Sbjct: 334 DVRFVIHFSLPKSLEGYHQ 352
>gi|392587356|gb|EIW76690.1| ATP-dependent DNA helicase [Coniophora puteana RWD-64-598 SS2]
Length = 898
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 114/343 (33%), Positives = 164/343 (47%), Gaps = 76/343 (22%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK------------- 93
T P+ + S LK+ F L+ FR NQL AI L +D ++MPTG
Sbjct: 153 TASPYYSEIISNLKNTFKLSSFRTNQLEAITATLDGRDVFVLMPTGGGKSLCYQLPAICK 212
Query: 94 -----------------------LLKKKKICLMTESSSL--------------------- 109
LK K I ++ SS
Sbjct: 213 TGKTQGVTIVITPLLALMTDQVMALKAKNIDAVSLSSGAFCGETTRDVESRLRRKGAPKP 272
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169
L+YV+PE++ S S ++ L ++ + LAR +DE H SWG DFR Y+ L++L+
Sbjct: 273 SLVYVTPERMQNSNSLLSLLDELNDSKQLARFVVDEAHVIQSWGRDFRDAYKELNVLRNK 332
Query: 170 FPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDEL 229
+P+VPI+ LTATA + D+ LQ++D V + FNRPNL Y VR KP +K E+
Sbjct: 333 WPNVPIMALTATADETAIRDITTQLQLKDEVKLMQSFNRPNLSYTVRPKPNNKKQATHEI 392
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESNV----------- 277
A + R N SG++Y S +CE++ +LR+ GL YHA +++
Sbjct: 393 ATFIKSRHPNSSGVVYCWSRNDCEEVASQLRDDFGLSAHYYHAGIDTATRPVIQSDWLSG 452
Query: 278 -------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIHH L K M+ +YQ + G
Sbjct: 453 KFKIVVATIAFGMGIDKPDVRFVIHHSLPKDMDGYYQETGRAG 495
>gi|134109345|ref|XP_776787.1| hypothetical protein CNBC2780 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259467|gb|EAL22140.1| hypothetical protein CNBC2780 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1217
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 120/344 (34%), Positives = 174/344 (50%), Gaps = 47/344 (13%)
Query: 7 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP-----------WSDRV 55
WS V L+ F L +FR +Q AI+ + +D ++MPT S +
Sbjct: 374 WSKEVNQKLRQVFKLPNFRKHQKEAIDETMAGRDVFVLMPTGGGKSLTYQLPAICSSGKT 433
Query: 56 RSVLKSKFNLTDFRPNQLAAINIA---LLKKDAIIIMPTGKLLKKKKICLMTESSS---- 108
R V F ++ ++ IN L+ + I TG L ++ K E S
Sbjct: 434 RGVT---FVVSPL----ISLINDQTRHLISRGIPAIAYTGDLTQRDKNLAHEELSKREPI 486
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
K++YV+PE ++ + L+ + + LAR IDE HC S WGHDFR DY L L+
Sbjct: 487 TKVVYVTPEMMSMGGHIKSILRGLLQRKQLARFVIDEAHCVSQWGHDFRADYLRLGELRR 546
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
+P VPI+ LTATA KV D+ + L+IE CV ++ FNRPNL YEVR K ++ + E
Sbjct: 547 DYPGVPIMALTATAQNKVQEDIIRSLRIEGCVCLRQSFNRPNLHYEVRPKTSS---VIQE 603
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELR-NRGLRVSAYHAKLESN----------- 276
+ + + SGI+Y S CE+L ++LR + GLR YHA +
Sbjct: 604 IVAFVHTQEARASGIVYCNSRDNCENLAKKLREDHGLRAYHYHAGMTKENRRKMQEGWQD 663
Query: 277 -------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VR+VIHH L +S+E +YQ + G
Sbjct: 664 HKFEIMVATIAFGMGIDKPDVRYVIHHHLPRSLEGYYQETGRAG 707
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 34 IALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG 92
+ + + +I + + WS V L+ F L +FR +Q AI+ + +D ++MPTG
Sbjct: 357 VPAVPQHRVIPLEITHRWSKEVNQKLRQVFKLPNFRKHQKEAIDETMAGRDVFVLMPTG 415
>gi|395861752|ref|XP_003803142.1| PREDICTED: Bloom syndrome protein [Otolemur garnettii]
Length = 1389
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 126/361 (34%), Positives = 175/361 (48%), Gaps = 78/361 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------- 52
N+P + + + KF L +FR NQL AIN ALL +D I+MPT S
Sbjct: 638 NFPHTKEMLKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 697
Query: 53 --------------DRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
D+V+ + + + + D ++ +I + L KKD II
Sbjct: 698 GVTVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPII------- 750
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGH
Sbjct: 751 ---------------KLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGH 795
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFR DY+ +++L+ FP VP++ LTATA +V D+ L+I V FNR NL Y
Sbjct: 796 DFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYY 855
Query: 215 VRIKPAAQK--DCLDELADLMSRRFRN-QSGIIYTTSIKECEDLREELRNRGLRVSAYHA 271
V K + DCL+ + R++ SGIIY S +EC+ + LR GL AYHA
Sbjct: 856 VLPKKPKKVAFDCLEWI-----RKYHPYDSGIIYCLSRRECDTMAGTLRKDGLAALAYHA 910
Query: 272 KLESN-------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAF 312
L + ++AFG+GIDKP+VRFVIH L KS+E +YQ S
Sbjct: 911 GLSDSERDEVQHKWINQDGCQVICATVAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRA 970
Query: 313 G 313
G
Sbjct: 971 G 971
>gi|357155794|ref|XP_003577240.1| PREDICTED: ATP-dependent DNA helicase Q-like 1-like [Brachypodium
distachyon]
Length = 599
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 171/332 (51%), Gaps = 50/332 (15%)
Query: 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YPWSDRV----RSVLKS 61
F FRP Q A + AL +D I+MPT +P V S+++
Sbjct: 193 FGNKSFRPLQYEACSAALNNRDCFILMPTGGGKSLCYQLPATLHPGVTVVVCPLLSLIQD 252
Query: 62 KFNLTDFRPN-QLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+ F+ Q + +N A ++M L + S KLLYV+PE++
Sbjct: 253 QVVALTFKFGIQASFLNSQQTSSQASVVMQE----------LRNGTPSFKLLYVTPERMV 302
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+ SFM L+ +++ G LAR IDE HC S WGHDFRPDY+ L LK FP VPI+ LTA
Sbjct: 303 GNYSFMEILRGLHQRGLLARFVIDEAHCVSQWGHDFRPDYRALGCLKQNFPRVPIMALTA 362
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TAT V D+ L++ + +V+K F+R NL Y V K + +L +L+ RF N
Sbjct: 363 TATEAVRKDILSTLRVPNALVLKRSFDRLNLNYMVIGKTKTPQ---MQLGELLKERFMNM 419
Query: 241 SGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN------------------VSIAF 281
SGI+Y S EC D + LR + ++ + YHA L + +IAF
Sbjct: 420 SGIVYCLSKNECADTAKFLREKYKIKCAHYHAGLAARQRTSVQEKWHRGEVKVICATIAF 479
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
G+GIDKP+VRFVIH+ LSKS+E++YQ S G
Sbjct: 480 GMGIDKPDVRFVIHNTLSKSIESYYQESGRAG 511
>gi|294658176|ref|XP_460513.2| DEHA2F03388p [Debaryomyces hansenii CBS767]
gi|202952930|emb|CAG88826.2| DEHA2F03388p [Debaryomyces hansenii CBS767]
Length = 1367
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 179/363 (49%), Gaps = 75/363 (20%)
Query: 23 DFRPNQLAAINI-ALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL 81
DF ++ INI K + I P + V S L S F L++FRPNQL AI+ L
Sbjct: 582 DFSDDEDELINILNNHKPNKENIPPNSEAFIKEVYSKLNSVFKLSNFRPNQLHAISSTLN 641
Query: 82 KKDAIIIMPTGK----------LLKKKK-----------ICLMTE--------------- 105
KD ++MPTG L+K K I LM +
Sbjct: 642 GKDVFVLMPTGGGKSLCYQLPALVKSGKTRGTTIVVSPLISLMQDQVQHLLNKNIKAGMV 701
Query: 106 -----------------SSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHC 148
+ L L+Y+SPE + S+ + K+Y LAR+ +DE HC
Sbjct: 702 SSKGSASERKSTLDSFRNGQLDLVYLSPEMINASQHIQRIITKLYDMNELARVVVDEAHC 761
Query: 149 CSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNR 208
SSWGHDFRPDY+ ++ K +P VP++ LTATA KV +D+ L++++ +++K FNR
Sbjct: 762 VSSWGHDFRPDYKGMNYFKHNYPKVPVMALTATANEKVRMDIIHHLKMDNPILLKQSFNR 821
Query: 209 PNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSA 268
NLFYE++ K + + L+ + + + + N++GIIY S + CE E+L G+ S
Sbjct: 822 LNLFYEIKWKTS---NTLEWIKNYILTKQVNKTGIIYCHSKQSCEHTSEKLNEWGVNASY 878
Query: 269 YHAKLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSI 310
YHA L +IAFG+GIDKP+VR+VIH + +++E +YQ +
Sbjct: 879 YHAGLSPTDRFEIQNKWQQNELQIICATIAFGMGIDKPDVRYVIHLFIPRTLEGYYQETG 938
Query: 311 AFG 313
G
Sbjct: 939 RAG 941
>gi|410960520|ref|XP_003986837.1| PREDICTED: Bloom syndrome protein [Felis catus]
Length = 1428
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 124/360 (34%), Positives = 175/360 (48%), Gaps = 76/360 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------- 52
++P + + + KF L +FR NQL AIN ALL +D I+MPT S
Sbjct: 659 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 718
Query: 53 --------------DRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
D+V+ + + + + D ++ +I + L KKD II
Sbjct: 719 GVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPII------- 771
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGH
Sbjct: 772 ---------------KLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGH 816
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFR DY+ +++L+ FP VP++ LTATA +V D+ L+I V FNR NL Y
Sbjct: 817 DFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILQPQVFSMSFNRHNLKYY 876
Query: 215 VRIKPAAQK--DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
V K + DCL + + + + SGIIY S +EC+ + + L+ GL AYHA
Sbjct: 877 VLPKKPKKVAFDCL----EWIRKHHPHDSGIIYCLSRRECDTMADTLQKDGLAALAYHAG 932
Query: 273 LESN-------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L + +IAFG+GIDKP+VRFVIH L KS+E +YQ S G
Sbjct: 933 LSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAG 992
>gi|345798304|ref|XP_003434427.1| PREDICTED: Bloom syndrome protein [Canis lupus familiaris]
Length = 1420
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 125/361 (34%), Positives = 177/361 (49%), Gaps = 78/361 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------- 52
++P + + + KF L +FR NQL AIN ALL +D I+MPT S
Sbjct: 650 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 709
Query: 53 --------------DRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
D+V+ + + + + D ++ +I + L KKD II
Sbjct: 710 GVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPII------- 762
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGH
Sbjct: 763 ---------------KLLYVTPEKVCASNRLLSTLENLYERKLLARFVIDEAHCVSQWGH 807
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFR DY+ +++L+ FP VP++ LTATA +V D+ L+I V FNR NL Y
Sbjct: 808 DFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILQPQVFSMSFNRHNLKYY 867
Query: 215 VRIKPAAQK--DCLDELADLMSRRFR-NQSGIIYTTSIKECEDLREELRNRGLRVSAYHA 271
V K + DCL+ + R++ + SGIIY S +EC+ + + L+ GL AYHA
Sbjct: 868 VLPKKPKKVAFDCLEWI-----RKYHPHDSGIIYCLSRRECDTMADTLQKDGLAALAYHA 922
Query: 272 KLESN-------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAF 312
L + +IAFG+GIDKP+VRFVIH L KS+E +YQ S
Sbjct: 923 GLSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRA 982
Query: 313 G 313
G
Sbjct: 983 G 983
>gi|343473260|emb|CCD14808.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 1399
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 116/336 (34%), Positives = 173/336 (51%), Gaps = 29/336 (8%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
+PWS +R V+ F L +R QL +N + ++D +++PT S ++ ++L +
Sbjct: 409 GFPWSAELRRVMIDVFGLHQYRFLQLEIMNACMDERDVFVLLPTGGGKSLCYQLPALLPN 468
Query: 62 KFNLTDFRPNQLAAIN---IALLKKDAIIIMPTGKLLKKKKICLMTESS----SLKLLYV 114
+T ++ I AL+ + TG+ K L E + S L+YV
Sbjct: 469 PAQVTIVISPLISLIQDQVYALMANGIPSMALTGQTNDSAKRKLFNEWAMGQISCALVYV 528
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PE +S F+ L ++ G L R IDE HC S WGHDFRPDY+ L++LK FP P
Sbjct: 529 TPEYFGRSDYFVQSLSRVASRGLLNRFVIDEAHCVSQWGHDFRPDYRKLAMLKQQFPTTP 588
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
I LTATAT V DV + L ++ ++ + FNR NL Y VR K + +AD++
Sbjct: 589 ISALTATATDVVQQDVVRTLGLQKALMFRGSFNRSNLGYSVR---KVGKGVAEVVADIIK 645
Query: 235 RRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------V 277
+F R GI+Y S K CE++ + L G+R S YH+ +
Sbjct: 646 NQFPRRSCGIVYCLSRKNCENMSKALTAHGIRASYYHSDADEKNERQEQWTKDELQVLCA 705
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GI+KP+VRFVIH + KS+E +YQ S G
Sbjct: 706 TIAFGMGINKPDVRFVIHAAMPKSIEGYYQESGRAG 741
>gi|301768849|ref|XP_002919837.1| PREDICTED: Bloom syndrome protein-like [Ailuropoda melanoleuca]
gi|281350343|gb|EFB25927.1| hypothetical protein PANDA_008500 [Ailuropoda melanoleuca]
Length = 1423
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 124/360 (34%), Positives = 175/360 (48%), Gaps = 76/360 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------- 52
++P + + + KF L +FR NQL AIN ALL +D I+MPT S
Sbjct: 655 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 714
Query: 53 --------------DRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
D+V+ + + + + D ++ +I + L KKD II
Sbjct: 715 GVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPII------- 767
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGH
Sbjct: 768 ---------------KLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGH 812
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFR DY+ +++L+ FP VP++ LTATA +V D+ L+I V FNR NL Y
Sbjct: 813 DFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILQPQVFSMSFNRHNLKYY 872
Query: 215 VRIKPAAQK--DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
V K + DCL + + + + SGIIY S +EC+ + + L+ GL AYHA
Sbjct: 873 VLPKKPKKVAFDCL----EWIRKHHPHDSGIIYCLSRRECDTMADTLQKDGLAALAYHAG 928
Query: 273 LESN-------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L + +IAFG+GIDKP+VRFVIH L KS+E +YQ S G
Sbjct: 929 LSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAG 988
>gi|298708608|emb|CBJ26095.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 1537
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/341 (35%), Positives = 170/341 (49%), Gaps = 42/341 (12%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+R + F FR Q I A+ KD ++MPT S + V
Sbjct: 580 IRKEVSDIFGHAKFRTGQEEVIVDAMKGKDVFVLMPTGGGKSLCYQLPACCCPGLAVVFS 639
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + Q+ A + ++ + + ++ + + LKLLY++PEK
Sbjct: 640 PLISLVQDQVAQMRATGVEAAYINSEQDYDSEVRVVMDQLYRLQDYGGLKLLYITPEKFC 699
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+S S LQ+++ G L+R IDE HC S WGHDFRPDY L IL+ FPDVPI+ LTA
Sbjct: 700 RSPSMNKALQRLHSKGLLSRFVIDEAHCVSDWGHDFRPDYLKLGILRKDFPDVPIMALTA 759
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TA T V D + LQ+ + V FNRPNL YE+R K AA LDE+A +M + F Q
Sbjct: 760 TANTVVRDDTIRRLQLRNPTVRTESFNRPNLKYEIRPKKAA---VLDEIAKVM-QSFPGQ 815
Query: 241 SGIIYTTSIKECEDLREEL---------RNRG-LRVSAYHAKLESN-------------- 276
SGI+Y S K+CE + L +RG RV YHA +
Sbjct: 816 SGIVYCLSRKDCEKVASGLLKKLSETTGGHRGRFRVDFYHADRTAAEKARVHREWSAGRI 875
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GI+KP+VR+VIHH + K++ +FYQ S G
Sbjct: 876 HLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAG 916
>gi|19074536|ref|NP_586042.1| ATP-DEPENDENT DNA HELICASE [Encephalitozoon cuniculi GB-M1]
gi|19069178|emb|CAD25646.1| ATP-DEPENDENT DNA HELICASE [Encephalitozoon cuniculi GB-M1]
Length = 766
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 164/318 (51%), Gaps = 29/318 (9%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDFRPNQ 72
L+ F + +FR NQ I L KD ++MPT S ++ +++ +
Sbjct: 229 LREVFKMKEFRTNQREVIQACLSGKDVFVLMPTGGGKSICYQLPALVYDGITIVVSPLLS 288
Query: 73 LAAINIALLKKDAIIIMPTGKLLKKKK-----ICLMTESSSLKLLYVSPEKLAKSKSFMT 127
L I L + I+ +P L + + L + K+ YV+PE +AKS F
Sbjct: 289 LVQDQIRNLLQKGILALPINSNLSRAERDLVFQVLGGDELICKIFYVTPELIAKSGHFHD 348
Query: 128 KLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVM 187
L + G L R IDE HC S WGHDFRPDY+ L ++ +P VPI+ LTATAT KV
Sbjct: 349 VLSGLVCRGRLKRFVIDEAHCVSQWGHDFRPDYKELGSMRARYPSVPIIALTATATQKVE 408
Query: 188 LDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTT 247
+D+ + L I C K FNR NL YEVR K + + LD +A + F + GIIY T
Sbjct: 409 MDILENLGIRGCETFKMSFNRSNLRYEVRAKTSTVE--LD-IASFVQTHFPDCCGIIYCT 465
Query: 248 SIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDKPN 289
S KECE + E+L + + + YHA L N +IAFG+GIDK +
Sbjct: 466 SKKECEMISEKL-GKYMGTAFYHAGLSKNERNSVQEKWNRGEFKVIVATIAFGMGIDKKD 524
Query: 290 VRFVIHHCLSKSMENFYQ 307
VRFVIH+C+ KS+E +YQ
Sbjct: 525 VRFVIHYCIPKSLEGYYQ 542
>gi|441498157|ref|ZP_20980358.1| ATP-dependent DNA helicase RecQ [Fulvivirga imtechensis AK7]
gi|441438064|gb|ELR71407.1| ATP-dependent DNA helicase RecQ [Fulvivirga imtechensis AK7]
Length = 728
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 171/327 (52%), Gaps = 43/327 (13%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSV 58
D ++S LK F FR NQ A IN L ++ +IMPT S D + V
Sbjct: 7 DLLKSKLKEVFGYNQFRGNQEAIINNILNGRNTFVIMPTGAGKSLCYQLPALVTDGLAIV 66
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEK 118
+ L + +QL A + +A + T + ++ T S+KLLYV+PE
Sbjct: 67 ISPLIALMKNQVDQLNAFGV-----NAQFLNSTLTKAEMNRVKKETLDGSIKLLYVAPES 121
Query: 119 LAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGL 178
L K ++ K ++ +A+DE HC S WGHDFRP+Y+ + + + ++PI+ L
Sbjct: 122 LTKEENI-----DFLKKANVSFVAVDEAHCISEWGHDFRPEYRRIKEIIGLLGNLPIIAL 176
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFR 238
TATAT KV LD+QK L +E V K+ FNR NLFYEVR K A+K + L R +
Sbjct: 177 TATATPKVQLDIQKNLHMEGADVFKSSFNRTNLFYEVRQKKHAKKQLIQFL-----RDHK 231
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGI+Y S K+ ++ E L G + + YHA LE V +IA
Sbjct: 232 GKSGIVYCLSRKKVVEIAELLNVNGFKAAPYHAGLEPAVREKNQDDFLNEDVDIVVATIA 291
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GIDKP+VRFV+H+ + KS+E +YQ
Sbjct: 292 FGMGIDKPDVRFVVHYDVPKSLEGYYQ 318
>gi|325189523|emb|CCA24010.1| bloom syndrome protein putative [Albugo laibachii Nc14]
Length = 700
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 121/337 (35%), Positives = 176/337 (52%), Gaps = 46/337 (13%)
Query: 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVL 59
+ + VL+ F T FRPNQ I+ A K+D ++MPT S D + V+
Sbjct: 352 QAKGVLRDIFGHTTFRPNQERVIHNAFEKRDIFVLMPTGGGKSLCYQLPACVDDGLTVVI 411
Query: 60 KSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC--LMTESSSLKLLYVSPE 117
+L + QL A+++ + A + ++ I L + + +KLLYV+PE
Sbjct: 412 SPLVSLIQDQVQQLQALDVGV----AYLNGEQDYETVQRPIVSELFSSQNRIKLLYVTPE 467
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
K+A S + + LAR IDE HC S WGHDFR DY L L+ FP V I+
Sbjct: 468 KIASSGMLTKLFESLENRSKLARFVIDEAHCISQWGHDFRKDYMNLGQLRRQFPSVRIMA 527
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATA ++ D+ K LQ+E+ + ++ FNRPNL Y+VR K ++ L E+AD + R
Sbjct: 528 LTATANSQTEADIVKNLQLENPFITRSSFNRPNLTYDVRKKGSS---FLSEIADFV-RNH 583
Query: 238 RNQSGIIYTTSIKECEDLREEL--------RNRGLRVSAYHAKLE-------------SN 276
SGIIY S K+CE E+L R R++ YHA LE N
Sbjct: 584 SQDSGIIYCLSKKDCEQTVEKLIKLLGYEGTKRASRIAFYHAGLEPEDRSFRHHEWSKGN 643
Query: 277 V-----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQV 308
V +IAFG+GI+KP+VR+VIH+ + +S+ ++YQV
Sbjct: 644 VKLIVATIAFGMGINKPDVRYVIHYTIPQSVTHYYQV 680
>gi|332238724|ref|XP_003268551.1| PREDICTED: LOW QUALITY PROTEIN: Bloom syndrome protein [Nomascus
leucogenys]
Length = 1417
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 175/340 (51%), Gaps = 36/340 (10%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVR-SVLKSK 62
++P + + + KF L +FR NQL AIN ALL +D I+MPT S + S
Sbjct: 648 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 707
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKK--------ICLMTESSSLKLLYV 114
+ + P L ++ + ++K + +P L K + L + +KLLYV
Sbjct: 708 GDTIEISP--LRSLIVDPVQKLTSLDIPATYLTGDKTDSETTNIYLQLSKKDPIIKLLYV 765
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ ++IL+ FP VP
Sbjct: 766 TPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNILRQKFPSVP 825
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK--DCLDELADL 232
++ LTATA +V D+ L+I V FNR NL Y V K + DCL +
Sbjct: 826 VMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL----EW 881
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
+ + SGIIY S +EC+ + + L+ GL AYHA L +
Sbjct: 882 IRKHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQ 941
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L KS+E +YQ S G
Sbjct: 942 VICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAG 981
>gi|145344767|ref|XP_001416896.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577122|gb|ABO95189.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 470
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 125/362 (34%), Positives = 177/362 (48%), Gaps = 52/362 (14%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
N+ WS L++ FN FR QL A+N + +D +++MPT S
Sbjct: 13 NFQWSKLCEQTLRNTFNAKSFRSLQLLAVNATMAARDCLVLMPTGGGKSLCYQLPAVVKP 72
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLY 113
+ V+ +L + + L+ + I A ++ L + + L+LLY
Sbjct: 73 GITVVISPLISLIQDQLHHLSEMGIP-----ATVLSAAKDSDNTIYDDLRSPTPELRLLY 127
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
V+PEK+ +S T LQ++Y+ G L R +DE HC S+WGHDFR DY L LK +FP
Sbjct: 128 VTPEKVVRSGKLKTALQRLYERGMLNRFVLDEAHCISAWGHDFRKDYTELRGLKHLFPTT 187
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL- 232
PI+ LTATAT +V D+ + L + C+ FNR NL YEV K K ++E+ +L
Sbjct: 188 PIMCLTATATRRVQDDIVRQLNLPKCLRFFDTFNRTNLTYEVHPKLKG-KQMVNEIKNLI 246
Query: 233 ----MSRRFRNQSGIIYTTSIKECEDLREEL----RNRG--------LRVSAYHAKLESN 276
+ R R Q GIIY S +CE + EL R+ G LR YHA L N
Sbjct: 247 VSRKLMRNNRVQCGIIYCFSQADCEKIATELNKIDRSVGDRERFPKRLRAVPYHAGLADN 306
Query: 277 V------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKH 317
V ++AFG+GI+KPNVRFV HH + KS+E ++Q S G G H
Sbjct: 307 VRKKHQEMWQRDEVNIICATVAFGMGINKPNVRFVFHHSMPKSLEAYHQESGRAGRDGDH 366
Query: 318 SF 319
Sbjct: 367 GL 368
>gi|110636721|ref|YP_676928.1| ATP-dependent DNA helicase RecQ [Cytophaga hutchinsonii ATCC 33406]
gi|110279402|gb|ABG57588.1| ATP-dependent DNA helicase RecQ [Cytophaga hutchinsonii ATCC 33406]
Length = 725
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 172/322 (53%), Gaps = 44/322 (13%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFN 64
LKS F FR Q IN L KD +IMPT S V V+
Sbjct: 13 LKSVFGYDRFRGEQEEIINNVLSGKDTFVIMPTGAGKSLCYQLPAISLPGVAIVISPLIA 72
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKS 124
L + +QL A + ++ + +KK+ T + +KLLYV+PE L K +
Sbjct: 73 LMKNQVDQLNAFGVNAQFLNSTLTKAEINRVKKE-----TLNGEIKLLYVAPESLTKEDN 127
Query: 125 FMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLTATAT 183
+ K ++ +AIDE HC S WGHDFRP+Y+ + SI++++ ++PI+ LTATAT
Sbjct: 128 IL-----FLKKAAISFVAIDEAHCISEWGHDFRPEYRKIHSIIESINNNIPIIALTATAT 182
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
KV LD+QK LQ++D V+ K+ FNR NLFYEVR K +K +L + R + QSGI
Sbjct: 183 PKVQLDIQKNLQMDDAVLFKSSFNRENLFYEVRPKGDTKK----KLIKFIKAR-KGQSGI 237
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGI 285
IY S K+ E++ E LR ++ YHA LE V +IAFG+GI
Sbjct: 238 IYCLSRKKVEEIAELLRVNDVKALPYHAGLEPAVRMGNQDAFLNEDADVIVATIAFGMGI 297
Query: 286 DKPNVRFVIHHCLSKSMENFYQ 307
DKP+VRFV+H+ KS+E +YQ
Sbjct: 298 DKPDVRFVVHYDTPKSLEGYYQ 319
>gi|357441847|ref|XP_003591201.1| Bloom syndrome protein-like protein [Medicago truncatula]
gi|355480249|gb|AES61452.1| Bloom syndrome protein-like protein [Medicago truncatula]
Length = 603
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 123/329 (37%), Positives = 176/329 (53%), Gaps = 44/329 (13%)
Query: 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINI 78
F RP Q A AL K+D+ I+MPT S L + T +P ++
Sbjct: 197 FGNKSLRPLQHQACKAALAKQDSFILMPTGGGKS------LCYQLPAT-LQPGVTVVVSP 249
Query: 79 AL-LKKDAIIIM------PTGKLLKKKKIC--------LMTESSSLKLLYVSPEKLAKSK 123
L L +D II + P L ++ L + S KLLYV+PE++A ++
Sbjct: 250 LLSLIQDQIITLNLKFGIPATFLNSQQNASQAAAVLQELRKDKPSCKLLYVTPERIAGNQ 309
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
SF+ L+ M++ G LA +DE HC S WGHDFRPDY+ L LK FP VP++ LTATAT
Sbjct: 310 SFVGILKCMHQKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQNFPRVPVMALTATAT 369
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
V D+ L+I +V++ F+RPNL YEV +K K+ L +L L+ RF++Q GI
Sbjct: 370 HPVREDILNALRIPHAIVLERSFDRPNLKYEVIVKT---KEPLKQLGQLLMDRFKSQCGI 426
Query: 244 IYTTSIKECEDLREELRNR-GLRVSAYHAKLESN------------------VSIAFGLG 284
+Y S EC D+ + L + ++ + YHA L + +IAFG+G
Sbjct: 427 VYCLSKSECVDVSKFLNEKCKIKAAYYHAGLAARQRVAVQKKWHDGEVHIVCATIAFGMG 486
Query: 285 IDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
IDK +VRFVIH+ +SKS+E++YQ S G
Sbjct: 487 IDKADVRFVIHNTMSKSIESYYQESGRAG 515
>gi|219518767|gb|AAI43281.1| BLM protein [Homo sapiens]
Length = 1042
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 126/346 (36%), Positives = 175/346 (50%), Gaps = 48/346 (13%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YP 50
++P + + + KF L +FR NQL AIN ALL +D I+MPT P
Sbjct: 273 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 332
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINI--ALLKKDAIIIMPTGKLLKKKKICLMTESSS 108
V S L+S L + +L +++I L D T L+ L +
Sbjct: 333 GVTVVISPLRS---LIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQ-----LSKKDPI 384
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+
Sbjct: 385 IKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQ 444
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK--DCL 226
FP VP++ LTATA +V D+ L+I V FNR NL Y V K + DCL
Sbjct: 445 KFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL 504
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------- 276
+ + + SGIIY S +EC+ + + L+ GL AYHA L +
Sbjct: 505 ----EWIRKHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWI 560
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L KS+E +YQ S G
Sbjct: 561 NQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAG 606
>gi|302805332|ref|XP_002984417.1| hypothetical protein SELMODRAFT_234552 [Selaginella moellendorffii]
gi|300147805|gb|EFJ14467.1| hypothetical protein SELMODRAFT_234552 [Selaginella moellendorffii]
Length = 605
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 138/231 (59%), Gaps = 21/231 (9%)
Query: 102 LMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQ 161
L + S KLLYV+PEKLAKS SF L + + LAR IDE HC S WGHDFRPDY+
Sbjct: 289 LRKQRPSCKLLYVTPEKLAKSASFQDVLHGLDRHRLLARFVIDEAHCVSQWGHDFRPDYK 348
Query: 162 YLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAA 221
L ILK FP VP++ LTATAT V D+ +L+I VI+ F+RPNL Y+V IK
Sbjct: 349 ALGILKQQFPRVPLMALTATATHSVRKDILSILRIPHATVIETSFDRPNLKYKVVIKDP- 407
Query: 222 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN---- 276
KD L++L ++ F Q GI+Y S EC+D+ + L N+ ++ + YHA L +
Sbjct: 408 -KDPLEQLGKIIKDDFARQCGIVYCLSKNECKDVCDYLSNKCKIKTAFYHAGLSNRERVL 466
Query: 277 --------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDK +VRFVIH+ +SK++E +YQ S G
Sbjct: 467 VQNKWQKNEVQVICATIAFGMGIDKADVRFVIHNTMSKAIEGYYQESGRAG 517
>gi|307179407|gb|EFN67737.1| ATP-dependent DNA helicase Q1 [Camponotus floridanus]
Length = 445
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/228 (43%), Positives = 137/228 (60%), Gaps = 7/228 (3%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
+ WS +++ LK F + R QL +N + K+D I+IMPT S ++ +V+
Sbjct: 78 FDWSAKLKKALKDVFKIDKLRELQLPTMNAIMSKEDVILIMPTGGGKSLCYQLPAVISKG 137
Query: 63 FN-----LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPE 117
L +QL ++ +K + + +K L + S LKL+YV+PE
Sbjct: 138 ITIVVSPLVSLMEDQLHGLHKFNVKATMLCAKADKESVKMTMNALADKKSDLKLIYVTPE 197
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
+AKS FM+KLQK Y+ G L R AIDEVHCCS WGHDFRPDY++L +LK+MF +PILG
Sbjct: 198 YMAKSNRFMSKLQKAYELGHLERFAIDEVHCCSQWGHDFRPDYKFLGVLKSMFQGIPILG 257
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDC 225
LTATA K+++DVQKML I C+V++A FNRPNL+YEV Q C
Sbjct: 258 LTATAPAKIIVDVQKMLDISGCLVLRASFNRPNLYYEVLTYCLDQTSC 305
>gi|6714387|gb|AAF26076.1|AC012393_2 putative DNA helicase [Arabidopsis thaliana]
Length = 624
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 121/321 (37%), Positives = 175/321 (54%), Gaps = 38/321 (11%)
Query: 24 FRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-----LTDFRPNQLAAI 76
FRP Q A ++ +KD ++MPT S ++ + LK+ L +Q+ A+
Sbjct: 225 FRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLPATLKAGVTIVISPLLSLIQDQIVAL 284
Query: 77 NI-----ALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQK 131
N+ A +L++ L ++ S KLLYV+PEK+A S SF+ L+
Sbjct: 285 NLKFGIPATFLNSQQTSSQAAAVLQE----LRRDNPSCKLLYVTPEKIAGSSSFLETLRC 340
Query: 132 MYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQ 191
+ + G LA +DE HC S WGHDFRPDY+ L LK FP VP++ LTATAT V DV
Sbjct: 341 LDRKGLLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPRVPVMALTATATESVCQDVL 400
Query: 192 KMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKE 251
K L+I V+K F+R NL YEV +K K+ L +L +L+ RF++QSGI+Y S E
Sbjct: 401 KSLRIPRAPVLKMSFDRINLKYEVIVKT---KEPLKQLQELLRDRFKDQSGIVYCLSKSE 457
Query: 252 CEDLREELRNR-GLRVSAYHAKLESN------------------VSIAFGLGIDKPNVRF 292
C D+ + L + ++ YHA + + +IAFG+GIDK +VRF
Sbjct: 458 CVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRF 517
Query: 293 VIHHCLSKSMENFYQVSIAFG 313
VIH+ LSK++E++YQ S G
Sbjct: 518 VIHNTLSKAVESYYQESGRAG 538
>gi|30679600|ref|NP_187225.2| ATP-dependent DNA helicase Q-like 1 [Arabidopsis thaliana]
gi|75334309|sp|Q9FT74.1|RQL1_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 1; AltName:
Full=RecQ-like protein 1; Short=AtRecQ1; Short=AtRecQl1
gi|10944747|emb|CAC14163.1| DNA Helicase [Arabidopsis thaliana]
gi|332640767|gb|AEE74288.1| ATP-dependent DNA helicase Q-like 1 [Arabidopsis thaliana]
Length = 606
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 121/321 (37%), Positives = 175/321 (54%), Gaps = 38/321 (11%)
Query: 24 FRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-----LTDFRPNQLAAI 76
FRP Q A ++ +KD ++MPT S ++ + LK+ L +Q+ A+
Sbjct: 207 FRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLPATLKAGVTIVISPLLSLIQDQIVAL 266
Query: 77 NI-----ALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQK 131
N+ A +L++ L ++ S KLLYV+PEK+A S SF+ L+
Sbjct: 267 NLKFGIPATFLNSQQTSSQAAAVLQE----LRRDNPSCKLLYVTPEKIAGSSSFLETLRC 322
Query: 132 MYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQ 191
+ + G LA +DE HC S WGHDFRPDY+ L LK FP VP++ LTATAT V DV
Sbjct: 323 LDRKGLLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPRVPVMALTATATESVCQDVL 382
Query: 192 KMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKE 251
K L+I V+K F+R NL YEV +K K+ L +L +L+ RF++QSGI+Y S E
Sbjct: 383 KSLRIPRAPVLKMSFDRINLKYEVIVKT---KEPLKQLQELLRDRFKDQSGIVYCLSKSE 439
Query: 252 CEDLREELRNR-GLRVSAYHAKLESN------------------VSIAFGLGIDKPNVRF 292
C D+ + L + ++ YHA + + +IAFG+GIDK +VRF
Sbjct: 440 CVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRF 499
Query: 293 VIHHCLSKSMENFYQVSIAFG 313
VIH+ LSK++E++YQ S G
Sbjct: 500 VIHNTLSKAVESYYQESGRAG 520
>gi|4557365|ref|NP_000048.1| Bloom syndrome protein [Homo sapiens]
gi|1705486|sp|P54132.1|BLM_HUMAN RecName: Full=Bloom syndrome protein; AltName: Full=DNA helicase,
RecQ-like type 2; Short=RecQ2; AltName: Full=RecQ
protein-like 3
gi|1072122|gb|AAA87850.1| Bloom's syndrome protein [Homo sapiens]
gi|58003498|gb|AAW62255.1| Bloom syndrome [Homo sapiens]
gi|62739395|gb|AAH93622.1| Bloom syndrome [Homo sapiens]
gi|75517719|gb|AAI01568.1| Bloom syndrome [Homo sapiens]
gi|92096020|gb|AAI15033.1| Bloom syndrome [Homo sapiens]
gi|92097932|gb|AAI15031.1| Bloom syndrome [Homo sapiens]
gi|119622513|gb|EAX02108.1| Bloom syndrome, isoform CRA_b [Homo sapiens]
Length = 1417
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 126/346 (36%), Positives = 175/346 (50%), Gaps = 48/346 (13%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YP 50
++P + + + KF L +FR NQL AIN ALL +D I+MPT P
Sbjct: 648 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 707
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINI--ALLKKDAIIIMPTGKLLKKKKICLMTESSS 108
V S L+S L + +L +++I L D T L+ L +
Sbjct: 708 GVTVVISPLRS---LIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQ-----LSKKDPI 759
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+
Sbjct: 760 IKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQ 819
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK--DCL 226
FP VP++ LTATA +V D+ L+I V FNR NL Y V K + DCL
Sbjct: 820 KFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL 879
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------- 276
+ + + SGIIY S +EC+ + + L+ GL AYHA L +
Sbjct: 880 ----EWIRKHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWI 935
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L KS+E +YQ S G
Sbjct: 936 NQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAG 981
>gi|189054874|dbj|BAG36927.1| unnamed protein product [Homo sapiens]
Length = 1417
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 126/346 (36%), Positives = 175/346 (50%), Gaps = 48/346 (13%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YP 50
++P + + + KF L +FR NQL AIN ALL +D I+MPT P
Sbjct: 648 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 707
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINI--ALLKKDAIIIMPTGKLLKKKKICLMTESSS 108
V S L+S L + +L +++I L D T L+ L +
Sbjct: 708 GVTVVISPLRS---LIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQ-----LSKKDPI 759
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+
Sbjct: 760 IKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQ 819
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK--DCL 226
FP VP++ LTATA +V D+ L+I V FNR NL Y V K + DCL
Sbjct: 820 KFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL 879
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------- 276
+ + + SGIIY S +EC+ + + L+ GL AYHA L +
Sbjct: 880 ----EWIRKHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWI 935
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L KS+E +YQ S G
Sbjct: 936 NQGGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAG 981
>gi|344284334|ref|XP_003413923.1| PREDICTED: Bloom syndrome protein [Loxodonta africana]
Length = 1429
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 124/360 (34%), Positives = 173/360 (48%), Gaps = 76/360 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------- 52
++P + + + KF L +FR NQL AIN ALL +D I+MPT S
Sbjct: 660 DFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACIAP 719
Query: 53 --------------DRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
D+V+ + + + + D ++ +I + L KKD II
Sbjct: 720 GVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPII------- 772
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGH
Sbjct: 773 ---------------KLLYVTPEKVCASNRLISTLENLYQRTLLARFVIDEAHCVSQWGH 817
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFR DY+ +++L+ FP VP++ LTATA +V D+ L+I V FNR NL Y
Sbjct: 818 DFRQDYKRMNMLRQKFPLVPVMALTATANPRVQKDILTQLKILKPQVFSMSFNRHNLKYY 877
Query: 215 VRIKPAAQK--DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
V K + DCL + + + SGIIY S +EC+ + E L+ GL AYHA
Sbjct: 878 VLPKKPKKVAFDCL----EWIRKHHPYDSGIIYCLSRRECDTMAETLKKNGLAALAYHAG 933
Query: 273 LES-------------------NVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L ++AFG+GIDKP+VRFVIH L KS+E +YQ S G
Sbjct: 934 LSDCARDEVQHKWINQDGCQVICATVAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAG 993
>gi|449517902|ref|XP_004165983.1| PREDICTED: ATP-dependent DNA helicase Q-like 1-like [Cucumis
sativus]
Length = 601
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 122/323 (37%), Positives = 173/323 (53%), Gaps = 33/323 (10%)
Query: 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINI 78
F FRP Q A A K+D I+MPT S + + +T L+ I
Sbjct: 196 FGNKAFRPLQHEACKAAASKQDCFILMPTGGGKSLCYQLPATVQPGVTVVISPLLSLIQD 255
Query: 79 ALLKKDAIIIMPTGKLLKKKKIC--------LMTESSSLKLLYVSPEKLAKSKSFMTKLQ 130
++ + +P+ L ++ L + S KLLYV+PE++A ++SF+ L+
Sbjct: 256 QIVTLNLKFGIPSTFLNSQQTSSQAAVVLQELRQDKPSCKLLYVTPERIA-TQSFLEILR 314
Query: 131 KMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDV 190
M+ LA +DE HC S WGHDFRPDY+ L LK FPDVP++ LTATAT V DV
Sbjct: 315 FMHMKKQLASFVVDEAHCVSQWGHDFRPDYRNLGCLKQNFPDVPVMALTATATHSVREDV 374
Query: 191 QKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIK 250
K L+I ++++ F+RPNL YEV K K+ L +L + RF+NQ GI+Y S
Sbjct: 375 LKALRIPHALILERSFDRPNLKYEVVCKT---KEPLVQLGQFIKERFKNQCGIVYCLSKS 431
Query: 251 ECEDLREELRNRGLRVSA--YHAKLESN------------------VSIAFGLGIDKPNV 290
EC ++ E L N+ ++ A YHA L + +IAFG+GIDKP+V
Sbjct: 432 ECVEVSETL-NKKFKIKAAYYHAGLAARQRVLVQKKWHVGDIQIVCATIAFGMGIDKPDV 490
Query: 291 RFVIHHCLSKSMENFYQVSIAFG 313
RFVIH+ +SKS+E++YQ S G
Sbjct: 491 RFVIHNTMSKSIESYYQESGRAG 513
>gi|348680141|gb|EGZ19957.1| hypothetical protein PHYSODRAFT_312852 [Phytophthora sojae]
Length = 1112
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 117/341 (34%), Positives = 178/341 (52%), Gaps = 44/341 (12%)
Query: 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVL 59
R + VL+ F FRPNQ + A ++D ++MPT S D V V+
Sbjct: 295 RAKRVLRDVFGHNAFRPNQERTVMEAFSRRDVFVLMPTGGGKSLCYQLPACIDDGVTIVV 354
Query: 60 KSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC-LMTESSSLKLLYVSPEK 118
+L + QL A+++ + + T ++K I L + +K+LYV+PEK
Sbjct: 355 SPLVSLIQDQVQQLEALDVGVANLNGDQDYDT---VQKPIISELFSNRIRIKMLYVTPEK 411
Query: 119 LAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGL 178
+A S + + K G LAR IDE HC S WGHDFR DY L L++ FP VPI+ L
Sbjct: 412 IASSGMLNNLFESLEKRGLLARFVIDEAHCISQWGHDFRKDYMTLGSLRSKFPSVPIMAL 471
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFR 238
TATA T+ D+ K L++++ + ++ FNRPNL Y+VR K + + E+AD + R+
Sbjct: 472 TATANTQTEADIVKNLKLKNPFITRSSFNRPNLTYDVRKKTSK---FMTEIADYV-RKHI 527
Query: 239 NQSGIIYTTSIKECEDLREEL--------RNRGLRVSAYHAKLESN-------------- 276
+ SGIIY S K+CE ++L + ++S YHA LE
Sbjct: 528 DDSGIIYCLSKKDCEQTADKLIKALGFEHTRKASQISFYHAGLEPEDRAYRHHEWSKGKI 587
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GI+KP+VR+VIHH + +S+ ++YQ + G
Sbjct: 588 KLICATVAFGMGINKPDVRYVIHHTIPQSVTHYYQEAGRAG 628
>gi|302782143|ref|XP_002972845.1| hypothetical protein SELMODRAFT_98462 [Selaginella moellendorffii]
gi|300159446|gb|EFJ26066.1| hypothetical protein SELMODRAFT_98462 [Selaginella moellendorffii]
Length = 602
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 137/231 (59%), Gaps = 21/231 (9%)
Query: 102 LMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQ 161
L + S KLLYV+PEKLAKS SF L + + LAR IDE HC S WGHDFRPDY+
Sbjct: 287 LRKQRPSCKLLYVTPEKLAKSASFQDVLHGLDRHRLLARFVIDEAHCVSQWGHDFRPDYK 346
Query: 162 YLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAA 221
L ILK FP VP++ LTATAT V D+ +L+I VI+ F+RPNL Y+V IK
Sbjct: 347 ALGILKQQFPRVPLMALTATATHSVRKDILSILRIPHATVIETSFDRPNLKYKVVIKDP- 405
Query: 222 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN---- 276
KD L++L ++ F Q GI+Y S EC D+ + L N+ ++ + YHA L +
Sbjct: 406 -KDPLEQLGKIIKDDFARQCGIVYCLSKNECRDVCDYLSNKCKIKTAFYHAGLSNRERVL 464
Query: 277 --------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDK +VRFVIH+ +SK++E +YQ S G
Sbjct: 465 VQNKWQKNEVQVICATIAFGMGIDKADVRFVIHNTMSKAIEGYYQESGRAG 515
>gi|242214076|ref|XP_002472863.1| predicted protein [Postia placenta Mad-698-R]
gi|220728069|gb|EED81971.1| predicted protein [Postia placenta Mad-698-R]
Length = 452
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 117/323 (36%), Positives = 162/323 (50%), Gaps = 77/323 (23%)
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL--KKKKIC------------- 101
LK F L+ FR NQL AI AL KD ++MPT GK L + +C
Sbjct: 1 LKDVFGLSGFRTNQLEAITAALDGKDVFLLMPTGGGKSLCYQLPAVCSSGTTKGVTVVIS 60
Query: 102 ----LMT-----------------------ESSSLK-----------LLYVSPEKLAKSK 123
LMT ES ++ LLY++PEK+ S
Sbjct: 61 PLRSLMTDQVESLQAKNVDVVYFSSDQSRDESDEVQHRLRSNGQKPSLLYLTPEKIKHSD 120
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
+ L +Y++ LAR +DE HC SSWG FR Y L+ L+ FPDVPI+ LTATAT
Sbjct: 121 ALKRDLTDLYESKMLARFVVDEAHCISSWGRQFRDSYGALAYLRKTFPDVPIMALTATAT 180
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
+ D+ L I C+ + FNRPNL YEVR+K +K DE+ D + + +N+SG+
Sbjct: 181 GEAKNDIIAHLGIRGCIELTQSFNRPNLNYEVRLK---KKKVTDEIVDFIVTKHKNESGV 237
Query: 244 IYTTSIKECEDLREELRNR-GLRVSAYHAKLESN------------------VSIAFGLG 284
IY +S +CE++ + LR++ GL+ YHA L+ +IA G+G
Sbjct: 238 IYCSSKVKCEEVAKNLRDKYGLKARHYHAGLDDRDRTVTMQEWKRGDFKIVVATIALGMG 297
Query: 285 IDKPNVRFVIHHCLSKSMENFYQ 307
IDK NVRFVIH+ + S+E +YQ
Sbjct: 298 IDKGNVRFVIHYAMPSSLEGYYQ 320
>gi|114778864|ref|ZP_01453663.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Mariprofundus ferrooxydans PV-1]
gi|114550899|gb|EAU53464.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Mariprofundus ferrooxydans PV-1]
Length = 724
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 122/324 (37%), Positives = 171/324 (52%), Gaps = 37/324 (11%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-- 64
++ R VLK F FRP Q I L KDA ++MPT S ++ ++++
Sbjct: 10 EQARKVLKDIFGYDMFRPMQEEIICNLLDGKDAFVLMPTGGGKSICYQIPAIMREGTGIV 69
Query: 65 ---LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAK 121
L +Q+ A+ +K A + K + K + E+ L LLYV+PE+L
Sbjct: 70 VSPLISLMKDQVDALTACGVK--AAYYNSSLKAAEAKDVLERFEAGELDLLYVAPERLL- 126
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
SKSF+TKL+K+ L+ AIDE HC S WGHDFRP+Y L L+ +FPDVP+L LTAT
Sbjct: 127 SKSFLTKLEKLK----LSMFAIDEAHCVSQWGHDFRPEYVRLGELREIFPDVPMLALTAT 182
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQS 241
A D+ LQ+ A F+RPN+ Y V A ++ L ++ + + N S
Sbjct: 183 ADEHTREDISDRLQLGKAKRFVASFDRPNIRYLV----AEKRQPLTQILQFLD-GWPNAS 237
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGL 283
G+IY S K EDL L+ G+R +AYHA + +IAFG+
Sbjct: 238 GVIYCLSRKRVEDLAVNLQRHGIRAAAYHAGIPGRSRERVQDDFLRDRVKVIVATIAFGM 297
Query: 284 GIDKPNVRFVIHHCLSKSMENFYQ 307
G+DKPNVRFVIHH L KS+E++YQ
Sbjct: 298 GVDKPNVRFVIHHDLPKSIESYYQ 321
>gi|47497399|dbj|BAD19436.1| DNA helicase RECQE-like [Oryza sativa Japonica Group]
gi|125583898|gb|EAZ24829.1| hypothetical protein OsJ_08609 [Oryza sativa Japonica Group]
Length = 692
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 119/286 (41%), Positives = 156/286 (54%), Gaps = 31/286 (10%)
Query: 54 RVRSVLKSKFNLTDFRPNQLAAI----------NIALLKKDAI---IIMPTGKLLKKKKI 100
+ +VLK F + FR QL AI +A LK I + T K+KI
Sbjct: 25 ELENVLKQHFGYSGFRGKQLEAIEAVLSALMENQVASLKSKGIPAEFLSSTQTSHNKQKI 84
Query: 101 C--LMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRP 158
L + + SLKLLYV+PE +A S F KL K+Y G L +AIDE HC S+WGHDFRP
Sbjct: 85 HEDLDSGNPSLKLLYVTPELVATS-GFKAKLTKLYNRGLLGLVAIDEAHCISTWGHDFRP 143
Query: 159 DYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIK 218
Y+ LS L+ FPD+PIL LTATA KV DV L + + ++++A FNRPN+FYEVR
Sbjct: 144 SYRKLSSLRNQFPDIPILALTATAVPKVQKDVISSLCLRNPLILRASFNRPNIFYEVRY- 202
Query: 219 PAAQKDCLDELADLMSRRFR---NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES 275
KD LD++ +S + N I+Y C+DL L +G+ +AYHA L S
Sbjct: 203 ----KDLLDDVYSDISNLLKSSGNVCSIVYCLERAVCDDLTMHLSQQGISSAAYHAGLNS 258
Query: 276 NVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRS 321
GID+ +VR V H+ L KSME FYQ S G + +S
Sbjct: 259 K-------GIDRQDVRIVCHYNLPKSMEAFYQESGRAGRDQQPSKS 297
>gi|125541362|gb|EAY87757.1| hypothetical protein OsI_09175 [Oryza sativa Indica Group]
Length = 692
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 119/286 (41%), Positives = 156/286 (54%), Gaps = 31/286 (10%)
Query: 54 RVRSVLKSKFNLTDFRPNQLAAI----------NIALLKKDAI---IIMPTGKLLKKKKI 100
+ +VLK F + FR QL AI +A LK I + T K+KI
Sbjct: 25 ELENVLKQHFGYSGFRGKQLEAIEAVLSALMENQVASLKSKGIPAEFLSSTQTSHNKQKI 84
Query: 101 C--LMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRP 158
L + + SLKLLYV+PE +A S F KL K+Y G L +AIDE HC S+WGHDFRP
Sbjct: 85 HEDLDSGNPSLKLLYVTPELVATS-GFKAKLTKLYNRGLLGLVAIDEAHCISTWGHDFRP 143
Query: 159 DYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIK 218
Y+ LS L+ FPD+PIL LTATA KV DV L + + ++++A FNRPN+FYEVR
Sbjct: 144 SYRKLSSLRNQFPDIPILALTATAVPKVQKDVISSLCLRNPLILRASFNRPNIFYEVRY- 202
Query: 219 PAAQKDCLDELADLMSRRFR---NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES 275
KD LD++ +S + N I+Y C+DL L +G+ +AYHA L S
Sbjct: 203 ----KDLLDDVYSDISNLLKSSGNVCSIVYCLERAVCDDLTMHLSQQGISSAAYHAGLNS 258
Query: 276 NVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRS 321
GID+ +VR V H+ L KSME FYQ S G + +S
Sbjct: 259 K-------GIDRQDVRIVCHYNLPKSMEAFYQESGRAGRDQQPSKS 297
>gi|449454038|ref|XP_004144763.1| PREDICTED: ATP-dependent DNA helicase Q-like 1-like [Cucumis
sativus]
Length = 601
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 122/323 (37%), Positives = 173/323 (53%), Gaps = 33/323 (10%)
Query: 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINI 78
F FRP Q A A K+D I+MPT S + + +T L+ I
Sbjct: 196 FGNKAFRPLQHEACKAAASKQDCFILMPTGGGKSLCYQLPATVQPGVTVVISPLLSLIQD 255
Query: 79 ALLKKDAIIIMPTGKLLKKKKIC--------LMTESSSLKLLYVSPEKLAKSKSFMTKLQ 130
++ + +P+ L ++ L + S KLLYV+PE++A ++SF+ L+
Sbjct: 256 QIVTLNLKFGIPSTFLNSQQTSSQAAVVLQELRQDKPSCKLLYVTPERIA-TQSFLEILR 314
Query: 131 KMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDV 190
M+ LA +DE HC S WGHDFRPDY+ L LK FPDVP++ LTATAT V DV
Sbjct: 315 FMHMKKQLAGFVVDEAHCVSQWGHDFRPDYRNLGCLKQNFPDVPVMALTATATHSVREDV 374
Query: 191 QKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIK 250
K L+I ++++ F+RPNL YEV K K+ L +L + RF+NQ GI+Y S
Sbjct: 375 LKALRIPHALILERSFDRPNLKYEVVCKT---KEPLVQLGQFIKERFKNQCGIVYCLSKS 431
Query: 251 ECEDLREELRNRGLRVSA--YHAKLESN------------------VSIAFGLGIDKPNV 290
EC ++ E L N+ ++ A YHA L + +IAFG+GIDKP+V
Sbjct: 432 ECVEVSETL-NKKFKIKAAYYHAGLAARQRVLVQKKWHVGDIQIVCATIAFGMGIDKPDV 490
Query: 291 RFVIHHCLSKSMENFYQVSIAFG 313
RFVIH+ +SKS+E++YQ S G
Sbjct: 491 RFVIHNTMSKSIESYYQESGRAG 513
>gi|440298813|gb|ELP91444.1| DNA helicase hus2, putative [Entamoeba invadens IP1]
Length = 1361
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 175/337 (51%), Gaps = 32/337 (9%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
+ W + + F FRP+Q A IN AL + +++MPT S ++ S L +
Sbjct: 616 FTWDEVALKQNHNDFGNDSFRPSQKAIINCALSGHNTLVLMPTGGGKSLCYQLASALMTG 675
Query: 63 FN-----LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTES---SSLKLLYV 114
L +Q+A +N L+ + + K+ ++S LKL+++
Sbjct: 676 ITVVISPLVSLIQDQVANLNSTSLENNVLAYYQGSDFEAGKRFFAESKSVCKPKLKLVFL 735
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PE++ + SF+ L Y A I +DE HC S WGHDFR YQ LS+L +P VP
Sbjct: 736 TPERI-QLDSFLEALDSYYNNRNFALIVVDEAHCVSQWGHDFRESYQKLSVLTQRYPGVP 794
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
++ LTATAT +V D+ + +E VV FNR NL Y V+ K K+ +D++ L+
Sbjct: 795 LMMLTATATERVQNDILLSVGVESAVVFTQSFNRKNLRYCVKPKT---KNVIDDIEKLIK 851
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------ 276
++RNQSGI+Y S K +D+ ++L RG++ YHA+L
Sbjct: 852 TKYRNQSGIVYCLSRKNTKDVCDQLVARGIKACFYHAELTPEERQKAQRGWSDGEFDVIC 911
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GI+KP+VRFVIHH L K++E +YQ S G
Sbjct: 912 ATIAFGMGINKPDVRFVIHHSLPKTLEGYYQESGRAG 948
>gi|308801525|ref|XP_003078076.1| DNA helicase isolog (ISS) [Ostreococcus tauri]
gi|116056527|emb|CAL52816.1| DNA helicase isolog (ISS) [Ostreococcus tauri]
Length = 1174
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 125/362 (34%), Positives = 182/362 (50%), Gaps = 52/362 (14%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
N+ WS ++ L++ FN FR QL A+N + +D +++MPT S
Sbjct: 332 NFAWSKLIQQTLRNTFNAKSFRSLQLLAVNATMAARDCLVLMPTGGGKSLCYQLPAVVKP 391
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLY 113
V V+ +L + + L+ + I A ++ + L + + L+LLY
Sbjct: 392 GVTVVISPLISLIQDQLHHLSEMGIP-----ATVLSAAKESDNSIYDDLRSSTPELRLLY 446
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
V+PEK+ +S T LQ++Y+ L R +DE HC S+WGHDFR DY L LK +FP
Sbjct: 447 VTPEKVVRSGKLKTALQRLYERNMLNRFVLDEAHCISAWGHDFRKDYTELRGLKHLFPTT 506
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
PI+ LTATAT +V D+ + L + C+ FNR NL YEV K K + E+ D++
Sbjct: 507 PIMCLTATATRRVQDDIVRQLNLPKCLRFFDTFNRTNLTYEVHPK-LKGKQMISEIKDVI 565
Query: 234 SRR--FRN---QSGIIYTTSIKECEDLREEL----RNRG--------LRVSAYHAKL--- 273
+R RN Q GIIY S +CE + EL R+ G L+ YHA L
Sbjct: 566 VKRGLMRNKRVQCGIIYCFSQADCEKIASELNKVDRSAGDHTRFPKRLKAVPYHAGLPEA 625
Query: 274 ------------ESNV---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKH 317
E N+ ++AFG+GI+KPNVRFV HH + KS+E ++Q S G G+H
Sbjct: 626 TRKKHQEMWQRDEVNIICATVAFGMGINKPNVRFVFHHSMPKSLEAYHQESGRAGRDGEH 685
Query: 318 SF 319
Sbjct: 686 GL 687
>gi|71021179|ref|XP_760820.1| hypothetical protein UM04673.1 [Ustilago maydis 521]
gi|46100194|gb|EAK85427.1| hypothetical protein UM04673.1 [Ustilago maydis 521]
Length = 748
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 185/361 (51%), Gaps = 57/361 (15%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++ WSD VR S F + FR QL IN AL ++A+++MPT S ++ ++L+
Sbjct: 107 SFSWSDDVRLAALSVFGIPSFRFCQLGVINAALDGRNAVVVMPTGGGKSLCYQLPAILRR 166
Query: 62 KFNL---------TDFRPN-QLAAINIALL-----KKDAIIIMPTGKLLKKKKICLMTES 106
L TD + Q I LL ++ + I+ +L +I T S
Sbjct: 167 GVTLVVSPLISLMTDQVLHLQQVGIQSELLCSTTPRERSNAILKQIRLGTTSEIEQATCS 226
Query: 107 SS--------LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRP 158
S +KLLYV+PE++AKSK+ ++ LQ Y+ L+RI IDE HCCS GHD+RP
Sbjct: 227 SGWNYHQNDGIKLLYVTPERIAKSKTCLSALQSAYEQARLSRIVIDEAHCCSQMGHDYRP 286
Query: 159 DYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIE-----------DCVVIKAPFN 207
DY LS+L+ +FP VPI+ LTAT KV+ ++ +++ +E + AP
Sbjct: 287 DYAKLSLLRRLFPKVPIMCLTATCGPKVLNEILEIIDLEPITEPDNAAPKRTIYFTAPLF 346
Query: 208 RPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLRE---ELRNRGL 264
RPNL Y+V +P K + + D + + SGI+Y S + + + EL + +
Sbjct: 347 RPNLAYKVVQRPQQTKAAAEAIVDYILQNHAGHSGIVYCLSQADTQATAKALSELSSGRI 406
Query: 265 RVSAYHAKLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFY 306
YHA L+ +IAFG+GIDKP+VRFVIH C+SKS++ +Y
Sbjct: 407 ATGCYHAGLDDASKHMIHTDWRTGRIQVVCATIAFGMGIDKPDVRFVIHACISKSIDGYY 466
Query: 307 Q 307
Q
Sbjct: 467 Q 467
>gi|3370996|dbj|BAA32001.1| mBlm [Mus musculus]
Length = 1416
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 125/360 (34%), Positives = 172/360 (47%), Gaps = 76/360 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD----------------------- 40
N+P + + + KF L +FR NQL AIN ALL +D
Sbjct: 656 NFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 715
Query: 41 --AIIIMPTDYPWSDRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
I+I P D+V+ + + + + D ++ A I + L KKD II
Sbjct: 716 GVTIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPII------- 768
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGH
Sbjct: 769 ---------------KLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGH 813
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFR DY+ +++L+ FP VP++ LTATA +V D+ L+I V FNR NL Y
Sbjct: 814 DFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYY 873
Query: 215 VRIKPAAQK--DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
V K + DCL + + + SGIIY S +EC+ + + L+ GL AYHA
Sbjct: 874 VLPKKPKKVAFDCL----EWIRKHHPYDSGIIYCLSRRECDTMADTLQREGLAALAYHAG 929
Query: 273 LESN-------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L + +IAFG+GIDKP+VRFVIH L KSME +YQ S G
Sbjct: 930 LSDSARDEVQHKWINQDNCQVICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAG 989
>gi|148675036|gb|EDL06983.1| Bloom syndrome homolog (human), isoform CRA_b [Mus musculus]
Length = 1417
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 125/360 (34%), Positives = 172/360 (47%), Gaps = 76/360 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD----------------------- 40
N+P + + + KF L +FR NQL AIN ALL +D
Sbjct: 657 NFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 716
Query: 41 --AIIIMPTDYPWSDRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
I+I P D+V+ + + + + D ++ A I + L KKD II
Sbjct: 717 GVTIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPII------- 769
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGH
Sbjct: 770 ---------------KLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGH 814
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFR DY+ +++L+ FP VP++ LTATA +V D+ L+I V FNR NL Y
Sbjct: 815 DFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYY 874
Query: 215 VRIKPAAQK--DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
V K + DCL + + + SGIIY S +EC+ + + L+ GL AYHA
Sbjct: 875 VLPKKPKKVAFDCL----EWIRKHHPYDSGIIYCLSRRECDTMADTLQREGLAALAYHAG 930
Query: 273 LESN-------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L + +IAFG+GIDKP+VRFVIH L KSME +YQ S G
Sbjct: 931 LSDSARDEVQHKWINQDNCQVICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAG 990
>gi|393911114|gb|EJD76172.1| ATP-dependent DNA helicase [Loa loa]
Length = 564
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 122/335 (36%), Positives = 173/335 (51%), Gaps = 72/335 (21%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG--------------- 92
D+ W VL + F L+DFRP Q A IN L K+D +++M TG
Sbjct: 68 DFQWMKECLHVLHNVFKLSDFRPLQRAVINAVLSKEDCLVVMSTGSGKSLCYQLPAVIMK 127
Query: 93 ---------------KLLKKKKICL--------------------MTESSS-LKLLYVSP 116
+L + +K+ + +T+S + L+LLYV+P
Sbjct: 128 GIVLVVSPLIALIEDQLHQLRKLGIDAATLNQSTAKEEISRVQTALTDSKAPLRLLYVTP 187
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EKLAKSK M +L+K + + R+ + + + F L +LK F VP++
Sbjct: 188 EKLAKSKRIMNRLEKCNE---MKRLKLMKYTAALNGDMIFGQILNSLIVLKRQFQAVPLI 244
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ DV+ ML I VV +A FNRPNL Y V KP++ + +D L +L+ R
Sbjct: 245 GLTATATADVIDDVKNMLGIPAAVVFRAGFNRPNLHYSVCQKPSSDVEFVDILVELIKTR 304
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
F SGIIY S KECE+L + LR +G++ S YHA L+++ +
Sbjct: 305 FAELSGIIYCFSRKECEELTKSLRAKGVKASHYHAFLDADKRNITHEKWLNGGINVIVAT 364
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
IAFG+GIDKP+VR+VIHH L KS+EN+YQ S G
Sbjct: 365 IAFGMGIDKPDVRYVIHHSLPKSLENYYQESGRVG 399
>gi|226693393|ref|NP_031576.4| Bloom syndrome protein homolog isoform 1 [Mus musculus]
Length = 1419
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 125/360 (34%), Positives = 172/360 (47%), Gaps = 76/360 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD----------------------- 40
N+P + + + KF L +FR NQL AIN ALL +D
Sbjct: 659 NFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 718
Query: 41 --AIIIMPTDYPWSDRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
I+I P D+V+ + + + + D ++ A I + L KKD II
Sbjct: 719 GVTIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPII------- 771
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGH
Sbjct: 772 ---------------KLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGH 816
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFR DY+ +++L+ FP VP++ LTATA +V D+ L+I V FNR NL Y
Sbjct: 817 DFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYY 876
Query: 215 VRIKPAAQK--DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
V K + DCL + + + SGIIY S +EC+ + + L+ GL AYHA
Sbjct: 877 VLPKKPKKVAFDCL----EWIRKHHPYDSGIIYCLSRRECDTMADTLQREGLAALAYHAG 932
Query: 273 LESN-------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L + +IAFG+GIDKP+VRFVIH L KSME +YQ S G
Sbjct: 933 LSDSARDEVQHKWINQDNCQVICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAG 992
>gi|148675035|gb|EDL06982.1| Bloom syndrome homolog (human), isoform CRA_a [Mus musculus]
Length = 1420
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 125/360 (34%), Positives = 172/360 (47%), Gaps = 76/360 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD----------------------- 40
N+P + + + KF L +FR NQL AIN ALL +D
Sbjct: 660 NFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 719
Query: 41 --AIIIMPTDYPWSDRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
I+I P D+V+ + + + + D ++ A I + L KKD II
Sbjct: 720 GVTIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPII------- 772
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGH
Sbjct: 773 ---------------KLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGH 817
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFR DY+ +++L+ FP VP++ LTATA +V D+ L+I V FNR NL Y
Sbjct: 818 DFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYY 877
Query: 215 VRIKPAAQK--DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
V K + DCL + + + SGIIY S +EC+ + + L+ GL AYHA
Sbjct: 878 VLPKKPKKVAFDCL----EWIRKHHPYDSGIIYCLSRRECDTMADTLQREGLAALAYHAG 933
Query: 273 LESN-------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L + +IAFG+GIDKP+VRFVIH L KSME +YQ S G
Sbjct: 934 LSDSARDEVQHKWINQDNCQVICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAG 993
>gi|110225360|ref|NP_001035992.1| Bloom syndrome protein homolog isoform 2 [Mus musculus]
gi|5921178|sp|O88700.1|BLM_MOUSE RecName: Full=Bloom syndrome protein homolog; Short=mBLM; AltName:
Full=RecQ helicase homolog
gi|3452495|emb|CAB10933.1| BLM protein [Mus musculus]
gi|162318414|gb|AAI57096.1| Bloom syndrome homolog (human) [synthetic construct]
Length = 1416
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 125/360 (34%), Positives = 172/360 (47%), Gaps = 76/360 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD----------------------- 40
N+P + + + KF L +FR NQL AIN ALL +D
Sbjct: 656 NFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 715
Query: 41 --AIIIMPTDYPWSDRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
I+I P D+V+ + + + + D ++ A I + L KKD II
Sbjct: 716 GVTIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPII------- 768
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGH
Sbjct: 769 ---------------KLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGH 813
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFR DY+ +++L+ FP VP++ LTATA +V D+ L+I V FNR NL Y
Sbjct: 814 DFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYY 873
Query: 215 VRIKPAAQK--DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
V K + DCL + + + SGIIY S +EC+ + + L+ GL AYHA
Sbjct: 874 VLPKKPKKVAFDCL----EWIRKHHPYDSGIIYCLSRRECDTMADTLQREGLAALAYHAG 929
Query: 273 LESN-------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L + +IAFG+GIDKP+VRFVIH L KSME +YQ S G
Sbjct: 930 LSDSARDEVQHKWINQDNCQVICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAG 989
>gi|312066223|ref|XP_003136168.1| ATP-dependent DNA helicase [Loa loa]
Length = 590
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/335 (35%), Positives = 167/335 (49%), Gaps = 72/335 (21%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG--------------- 92
D+ W VL + F L+DFRP Q A IN L K+D +++M TG
Sbjct: 68 DFQWMKECLHVLHNVFKLSDFRPLQRAVINAVLSKEDCLVVMSTGSGKSLCYQLPAVIMK 127
Query: 93 ------------------------------------KLLKKKKICLMTESSSLKLLYVSP 116
+ + + + L + L+LLYV+P
Sbjct: 128 GIVLVVSPLIALIEDQLHQLRKLGIDAATLNQSTAKEEISRVQTALTDSKAPLRLLYVTP 187
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EKLAKSK M +L+K + + R+ + + + F L +LK F VP++
Sbjct: 188 EKLAKSKRIMNRLEKCNE---MKRLKLMKYTAALNGDMIFGQILNSLIVLKRQFQAVPLI 244
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ DV+ ML I VV +A FNRPNL Y V KP++ + +D L +L+ R
Sbjct: 245 GLTATATADVIDDVKNMLGIPAAVVFRAGFNRPNLHYSVCQKPSSDVEFVDILVELIKTR 304
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
F SGIIY S KECE+L + LR +G++ S YHA L+++ +
Sbjct: 305 FAELSGIIYCFSRKECEELTKSLRAKGVKASHYHAFLDADKRNITHEKWLNGGINVIVAT 364
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
IAFG+GIDKP+VR+VIHH L KS+EN+YQ S G
Sbjct: 365 IAFGMGIDKPDVRYVIHHSLPKSLENYYQESGRVG 399
>gi|242013217|ref|XP_002427311.1| blooms syndrome DNA helicase, putative [Pediculus humanus corporis]
gi|212511652|gb|EEB14573.1| blooms syndrome DNA helicase, putative [Pediculus humanus corporis]
Length = 1152
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/337 (35%), Positives = 167/337 (49%), Gaps = 33/337 (9%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSDR 54
YP S + + KF L FR NQL +N ALL D ++MPT S
Sbjct: 389 YPHSQDLIKMFHLKFGLKSFRTNQLQVMNAALLGHDCFVLMPTGGGKSLCYQLPAIVSQG 448
Query: 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYV 114
V V+ +L + +L ++I + + +K L +KLLYV
Sbjct: 449 VTVVISPLRSLILDQVTKLVTLDIKACHLSGDVKESEVVDIYRK---LNMPEPEIKLLYV 505
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PEK+ S S ++Y LAR IDE HC S WGHDFRPDY+ L L+ +P+V
Sbjct: 506 TPEKVGASTSLRNIFSRLYNRNMLARFVIDEAHCVSQWGHDFRPDYKKLRELRENYPNVN 565
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
I+ LTATAT +V +D+ L+++ + FNR NL Y V+ K K L ++A L+
Sbjct: 566 IMALTATATPRVRIDILHQLKVKSPKWFLSSFNRSNLCYAVKEKKG--KSTLKDIAALIQ 623
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------ 276
+ F +GIIY S KECED+ +L+ G+ YHA L
Sbjct: 624 QEFSRDTGIIYCFSRKECEDVARDLKVHGIGAIPYHAGLNDTERTKAQNLWMNGKVKVVC 683
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDK +VR+V H+ L KS+E +YQ S G
Sbjct: 684 ATIAFGMGIDKLDVRYVFHYSLPKSIEGYYQESGRAG 720
>gi|336388103|gb|EGO29247.1| hypothetical protein SERLADRAFT_445074 [Serpula lacrymans var.
lacrymans S7.9]
Length = 562
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 122/349 (34%), Positives = 178/349 (51%), Gaps = 50/349 (14%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDFRPNQ 72
+K F++ +FR Q N L +D + +MPT S ++ ++L L
Sbjct: 1 MKKVFHIDNFRLCQQGVCNANLDGRDVVCVMPTGGGKSLTYQLPAILTPGCTLVVSPLIS 60
Query: 73 LAAINIALLKKDAI-IIMPTGKLLKKK------KICLMTESSS---------LKLLYVSP 116
L I L++ I +M T K + ++ M S S +KL YV+P
Sbjct: 61 LMTDQILHLREAGIEAVMLTSGTSKGELSSILSRLTAMASSRSHSMDDFAKDIKLCYVTP 120
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK+FM+ LQK+ LARI IDE HC SS GHDFRPDY+ L L+ FPDVPIL
Sbjct: 121 EKIAKSKTFMSLLQKLVDGAKLARIVIDEAHCVSSLGHDFRPDYKELRKLRQYFPDVPIL 180
Query: 177 GLTATATTKVMLDVQKMLQI-----------EDCVVIKAPFNRPNLFYEVRIKPAAQKDC 225
L+AT KV+ D+ K+LQ+ + V AP R NL Y V KP++
Sbjct: 181 ALSATCPPKVLNDILKILQMKHTVDGKAATRQGTVYFSAPLYRKNLHYAVLPKPSSTTQV 240
Query: 226 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRG---LRVSAYHAKLESN------ 276
++ + + + + R++SGI+Y ++ K+ E + E L ++ YH+++
Sbjct: 241 IEAMVEYILEKHRDESGIVYCSTKKDTESVAENLHQISGGVIKAGVYHSEVPDGKKEQLH 300
Query: 277 ------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFGLGIDK NVRFV+HH +SKS++ FYQ S G
Sbjct: 301 RQWRQGDVQVVCATIAFGLGIDKGNVRFVLHHTMSKSLDGFYQESGRAG 349
>gi|345315332|ref|XP_001515695.2| PREDICTED: Bloom syndrome protein [Ornithorhynchus anatinus]
Length = 865
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 125/360 (34%), Positives = 172/360 (47%), Gaps = 76/360 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------- 52
++ S + + KF L FR NQL AIN ALL +D I+MPT S
Sbjct: 68 DFAHSKEMMKIFHKKFGLHHFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACISP 127
Query: 53 --------------DRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
D+V+ + + + + D ++ A+I + L KKD II
Sbjct: 128 GVSIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEAASIYLQLSKKDPII------- 180
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGH
Sbjct: 181 ---------------KLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGH 225
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFR DY+ +++L+ FP VP++ LTATA +V D+ L+I V FNR NL Y+
Sbjct: 226 DFRQDYKRMNVLRQKFPSVPVMALTATANPRVQKDILTQLKILKPQVFSMSFNRHNLKYD 285
Query: 215 VRIKPAAQK--DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
V K + DCL + + SGIIY S +EC+ + LR GL AYHA
Sbjct: 286 VLPKKPKKVAFDCL----SWIRKHHPYDSGIIYCLSRRECDTMALTLRKDGLAALAYHAG 341
Query: 273 LESN-------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L + +IAFG+GIDKP+VR+VIH L KS+E +YQ S G
Sbjct: 342 LSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAG 401
>gi|123494203|ref|XP_001326459.1| ATP-dependent DNA helicase, RecQ family protein [Trichomonas
vaginalis G3]
gi|121909374|gb|EAY14236.1| ATP-dependent DNA helicase, RecQ family protein [Trichomonas
vaginalis G3]
Length = 1081
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 118/350 (33%), Positives = 174/350 (49%), Gaps = 50/350 (14%)
Query: 9 DRVRSVLKSKFNLTD--------FRPNQLAAINIALLKKDAIIIMPTDYPWS-------- 52
+++ ++SK N+ + FR Q AI AL KD ++MPT S
Sbjct: 358 EQISPAVESKMNIVNQKVFHHMHFRGKQRDAIGAALNGKDVFVLMPTGGGKSLCYQLPGY 417
Query: 53 --DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLM---TESS 107
+ V+ +L + L +NI M G K+K M ++
Sbjct: 418 MQGGITLVVSPLISLIQDQVRSLVELNIE--------AMSFGADTSKEKYSEMWRKISNN 469
Query: 108 SLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
SL+ L+++PEK+ + L ++Y L R IDE HC S WGHDFRPDY LS L+
Sbjct: 470 SLRFLFLTPEKIMAGSTLDGFLTQLYNENRLTRFVIDEAHCVSQWGHDFRPDYTQLSNLR 529
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLD 227
FP+V I+ LTATAT V D+ + L I+ C + K+ FNRPN+FYEV K ++
Sbjct: 530 VRFPNVRIMALTATATDAVQKDIVENLGIKGCSLFKSSFNRPNIFYEVMKKETGFREAA- 588
Query: 228 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------- 276
L + + +RN +GI++ S E E + + ++ GL YHAK++ N
Sbjct: 589 -LKWIEEKNYRNSTGIVFCMSTAETEQIAKFFQDNGLSAKFYHAKMDKNDRKMTQIEWTK 647
Query: 277 -------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
++AFG+GIDKP+VR+VIH + KS+E +YQ S G GK S
Sbjct: 648 GRVKVIVATLAFGMGIDKPDVRYVIHMTMPKSLEEYYQESGRAGRDGKQS 697
>gi|390599702|gb|EIN09098.1| ATP-dependent DNA helicase [Punctularia strigosozonata HHB-11173
SS5]
Length = 828
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 126/383 (32%), Positives = 178/383 (46%), Gaps = 93/383 (24%)
Query: 24 FRPNQLAAIN----IALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIA 79
FRP+ A+ N I +D+ W+ ++R +K F + DFR Q A N
Sbjct: 84 FRPSANASHNGISDAKATSSTTIDYASSDWDWTPQLRRAMKKVFGIDDFRLCQEAVCNAN 143
Query: 80 LLKKDAIIIMPTG-----------KLLKKKKIC-----------------------LMTE 105
+ +D I +MPTG +LL + +MT
Sbjct: 144 MDGRDIICVMPTGGGKSLTYQLPAQLLPGTTLVISPLISLITDQIMHLHEAGVQAVMMTG 203
Query: 106 SSS---------------------LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAID 144
S+S +KL YV+PEKL+KSK+FM+ LQ+M + G L R+ ID
Sbjct: 204 STSKTEIKDIYSRLTGPIDSQRGEIKLCYVTPEKLSKSKAFMSVLQRMDEQGRLTRVVID 263
Query: 145 EVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIE------- 197
E HC S GHDFRPDY+ LS ++ +FP VPIL L+AT KV + +L+++
Sbjct: 264 EAHCVSELGHDFRPDYKELSKIRVLFPRVPILCLSATCPPKVRNSILHILRLDPVIQCGG 323
Query: 198 ------DCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKE 251
V AP R NL Y+V KPAA KD L +A + +QSGI+Y K+
Sbjct: 324 SISSKKGTVYFSAPLYRKNLHYKVLPKPAASKDVLKVMAQYILTNHADQSGIVYCYRKKD 383
Query: 252 CEDLREELRNRG---LRVSAYHAKLESN------------------VSIAFGLGIDKPNV 290
ED+ LR ++ YHA + +IAFGLGIDK +V
Sbjct: 384 TEDVAAGLREHSDSRIKTGVYHADIGDTAKEQLHTRWRKGEIKIVCATIAFGLGIDKGDV 443
Query: 291 RFVIHHCLSKSMENFYQVSIAFG 313
RFV+HH +SKS++ +YQ + G
Sbjct: 444 RFVLHHSMSKSLDGYYQETGRAG 466
>gi|397569954|gb|EJK47070.1| hypothetical protein THAOC_34236, partial [Thalassiosira oceanica]
Length = 977
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 112/344 (32%), Positives = 182/344 (52%), Gaps = 37/344 (10%)
Query: 6 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKF 63
PW DR+ L+ F L FR NQ A N L +D +IM T S ++ ++++S+
Sbjct: 341 PWHDRMMHHLRKTFKLESFRENQEAICNATLSGRDCFVIMRTGGGKSLTYQLPALIESEL 400
Query: 64 N------------LTDFRPNQLAAINIALLKKDAIII---MPTGKLLKKKKICLMTE-SS 107
+ L +Q +N A+ + A+ M G ++ L+ + ++
Sbjct: 401 DQHPRKISIVISPLISLIRDQEEQMN-AIRRGSALSFTSNMQGGSSEHARRWGLVRDPNA 459
Query: 108 SLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
+ L++V+PEK++KS ++L+K+ G L R IDE HC WG DFRPDY L ILK
Sbjct: 460 GVCLIFVTPEKVSKSGKLKSELEKLNGQGRLGRFVIDECHCACQWGCDFRPDYAKLGILK 519
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLD 227
FP +P+L +TATA+ +V +D + + + + ++ +RPNL Y V K ++ +D
Sbjct: 520 HHFPRIPLLAVTATASERVRVDCLAIFKSRNSLFFRSTASRPNLHYSVLAKSDNKQQVVD 579
Query: 228 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------- 276
++A + R ++GIIYT S +E + ++L +G+ AYHA ++
Sbjct: 580 DMAQFIKENHRVEAGIIYTFSKREANETADKLCAKGIVARAYHADVDDRRKDQIQRSWMR 639
Query: 277 -------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFGLGI+KP+VRFV+HH +SK++E +YQ S G
Sbjct: 640 NETQVVVATIAFGLGINKPDVRFVLHHSISKTLEAYYQESGRAG 683
>gi|38230500|gb|AAR14271.1| predicted protein [Populus tremula x Populus alba]
Length = 772
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 131/329 (39%), Positives = 180/329 (54%), Gaps = 39/329 (11%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNL--TDFR 69
+L+ F DFR QL AI L +D +MPT S ++ ++ K L +
Sbjct: 28 LLRWHFGYQDFRGKQLEAIEAVLSGRDCFCLMPTGGGKSMCYQIPALAKHGIVLVVSPLI 87
Query: 70 PNQLAAINIALLKKD--AIIIMPTGKLLKKKKIC--LMTESSSLKLLYVSPEKLAKSKSF 125
NQ+ IAL +K A + T + + KI L + S++LLYV+PE +A + F
Sbjct: 88 ENQV----IALKEKGIAAEFLSSTQHQVVRNKIHEDLDSGKPSVRLLYVTPELIA-TPGF 142
Query: 126 MTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTK 185
M+KL K++ G L IAIDE HC SSWGHDFRP Y+ LS L+ PDVP+L LTATA K
Sbjct: 143 MSKLTKIHTRGLLNLIAIDEAHCISSWGHDFRPSYRKLSSLRNHLPDVPVLALTATAAPK 202
Query: 186 VMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE-LADLMS--RRFRNQSG 242
V DV + L ++D +V+K+ FNRPN++YEVR KD LD+ ADL S + +
Sbjct: 203 VQNDVIESLCLQDPLVLKSSFNRPNIYYEVRY-----KDLLDDAYADLPSVLKSCGDVCA 257
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHA----KLESNV--------------SIAFGLG 284
I+Y C+ L L G+ +AYHA KL S+V ++AFG+G
Sbjct: 258 IVYCLERATCDGLSAHLSKNGISSAAYHAGLNNKLRSSVLDDWISSKIQVVVATVAFGMG 317
Query: 285 IDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
ID+ +VR V H + KSME+FYQ S G
Sbjct: 318 IDRKDVRMVCHFNIPKSMESFYQESGRAG 346
>gi|440748399|ref|ZP_20927652.1| ATP-dependent DNA helicase RecQ [Mariniradius saccharolyticus AK6]
gi|436483223|gb|ELP39291.1| ATP-dependent DNA helicase RecQ [Mariniradius saccharolyticus AK6]
Length = 725
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 118/329 (35%), Positives = 177/329 (53%), Gaps = 48/329 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--------DYPW--SDRVRSVLK 60
++ LK F +FR NQ + L+ ++ +IMPT +P S+ V+
Sbjct: 5 IKEKLKKIFGFNNFRGNQEPIVGNVLIGRNTFVIMPTGAGKSLCYQFPAVVSEGTAIVIS 64
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPT---GKLLKKKKICLMTESSSLKLLYVSPE 117
L + +QL A + +A + T ++ K KK L S KLLYV+PE
Sbjct: 65 PLIALMKNQVDQLNAFGV-----NAYFLNSTLNKSEITKVKKEVL---SGKTKLLYVAPE 116
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPIL 176
L K ++ K L+ +AIDE HC S WGHDFRP+Y+ + SI+ + P++PI+
Sbjct: 117 SLTKDENIA-----FLKEAKLSFVAIDEAHCISEWGHDFRPEYRKIKSIIGQIGPELPIV 171
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATAT KV D+Q+ LQ+E+ + K+ FNRPNLFYEVR P + + + + +
Sbjct: 172 ALTATATPKVQQDIQRNLQMEEADIFKSSFNRPNLFYEVR--PKVKNETKKAIIKYIKSQ 229
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------S 278
+ +SGIIY S K+ E++ E L+ G+ + YHA L+ V +
Sbjct: 230 -KGKSGIIYCLSRKKVEEIAELLKVNGISAAPYHAGLDQAVRIKNQDDFLNEEIDVIVAT 288
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
IAFG+GIDKP+VR+VIH+ + KS+E +YQ
Sbjct: 289 IAFGMGIDKPDVRYVIHYDVPKSLEGYYQ 317
>gi|336476813|ref|YP_004615954.1| ATP-dependent DNA helicase RecQ [Methanosalsum zhilinae DSM 4017]
gi|335930194|gb|AEH60735.1| ATP-dependent DNA helicase RecQ [Methanosalsum zhilinae DSM 4017]
Length = 611
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 174/331 (52%), Gaps = 43/331 (12%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
++ +L+ F DFRP Q I+ L KD +MPT S D V V+
Sbjct: 1 MQHILQKYFGYNDFRPLQKEIISDILEGKDTFALMPTGGGKSLCYQLPALMMDGVTVVIS 60
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + + L + IA ++ + K + +K I + +K+LYV+PE+L
Sbjct: 61 PLISLMKDQVDNLKSNGIAAEYLNSTLGYSQIKQVHEKLI-----DNRIKILYVAPERLI 115
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
S +F K G ++ A+DE HC S WGHDFRP+Y+ L+ILK F +VPI+ LTA
Sbjct: 116 MSDTF-----SYLKKGKVSMFAVDEAHCISEWGHDFRPEYRRLNILKKRFRNVPIVALTA 170
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TA+ KV D+ K L +EDC +A FNR NLFY V+ K KD +L + ++ R +
Sbjct: 171 TASPKVEKDIVKQLSLEDCRTYRASFNRKNLFYHVKTK----KDTYRQLKAYL-KKHRGE 225
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKL-----ESN-------------VSIAFG 282
SGIIY S E L + L G + AYHA L E N ++AFG
Sbjct: 226 SGIIYCQSRSMVETLSKRLNKDGFKTLAYHAGLSDFKREYNQNSFIQDNTDIIVATVAFG 285
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+GIDKP+VRFVIH+ L K++E++YQ + G
Sbjct: 286 MGIDKPDVRFVIHYDLPKNLESYYQETGRGG 316
>gi|412985574|emb|CCO19020.1| predicted protein [Bathycoccus prasinos]
Length = 1352
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/353 (33%), Positives = 179/353 (50%), Gaps = 48/353 (13%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
N+ W+ L++ F D+R QL AIN + KD +++MPT S D
Sbjct: 466 NFLWTKDCYYALRNNFGAQDYRGLQLQAINATMAGKDTLVLMPTGGGKSLCYQLPAIVRD 525
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLY 113
V V+ +L + + L ++I K ++ K + L +KLLY
Sbjct: 526 GVTIVVCPLISLIQDQLSNLEQLDI----KACLLGAYNAKNDAEVYNDLYGPEPKIKLLY 581
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
V+PEKL+ S + ++ +++ G L R IDE HC SSWGHDFR DY+ L +LK FPD+
Sbjct: 582 VTPEKLSMSNKLINLMKSLHRKGRLQRFVIDEAHCISSWGHDFRKDYKELRVLKHQFPDI 641
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
P++ LTATAT +V D+ + L + +CV FNR N+ YEV I +K ++E+ L+
Sbjct: 642 PVMALTATATVRVQDDIVRQLGLANCVRFFTTFNRTNITYEV-IPKKKEKQNVEEILSLI 700
Query: 234 ------SRRFRNQSGIIYTTSIKECEDLREE--LRN-------RGLRVSAYHAKLESNV- 277
RR R + GI+Y S +CE + L+N G++ YHA L+ V
Sbjct: 701 HDRGFVDRRGRVECGIVYCFSKNDCEKMANALCLKNNQDSRFRHGIKALPYHAGLDDKVR 760
Query: 278 -----------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GI+KP+VR+V HH + KS+E ++Q S G
Sbjct: 761 KAHQEAWTNDTCNIICATIAFGMGINKPDVRYVFHHSMPKSLEAYHQESGRAG 813
>gi|392337763|ref|XP_003753349.1| PREDICTED: Bloom syndrome protein homolog [Rattus norvegicus]
Length = 1401
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 124/360 (34%), Positives = 173/360 (48%), Gaps = 76/360 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD----------------------- 40
N+P + + + + KF L +FR NQL AIN ALL +D
Sbjct: 639 NFPHTKEMMKIFRKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 698
Query: 41 --AIIIMPTDYPWSDRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
I+I P D+V+ + + + + D ++ A I + L KKD II
Sbjct: 699 GVTIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPII------- 751
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGH
Sbjct: 752 ---------------KLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGH 796
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFR DY+ +++L+ FP VP++ LTATA +V D+ L+I V FNR NL Y
Sbjct: 797 DFRQDYKRMNMLRQRFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYY 856
Query: 215 VRIKPAAQK--DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
V K + DCL + + + SGIIY S KEC+ + + L+ GL AYHA
Sbjct: 857 VLPKKPKKVALDCL----EWIRKHHPYDSGIIYCLSRKECDTMADTLQREGLAALAYHAG 912
Query: 273 LESN-------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L + +IAFG+GIDKP+VRFV+H L KS+E +YQ S G
Sbjct: 913 LSDSARDEVQHKWINQDNCQVICATIAFGMGIDKPDVRFVVHASLPKSVEGYYQESGRAG 972
>gi|392344358|ref|XP_003748936.1| PREDICTED: Bloom syndrome protein homolog [Rattus norvegicus]
Length = 1401
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 124/360 (34%), Positives = 173/360 (48%), Gaps = 76/360 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD----------------------- 40
N+P + + + + KF L +FR NQL AIN ALL +D
Sbjct: 639 NFPHTKEMMKIFRKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 698
Query: 41 --AIIIMPTDYPWSDRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
I+I P D+V+ + + + + D ++ A I + L KKD II
Sbjct: 699 GVTIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPII------- 751
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGH
Sbjct: 752 ---------------KLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGH 796
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFR DY+ +++L+ FP VP++ LTATA +V D+ L+I V FNR NL Y
Sbjct: 797 DFRQDYKRMNMLRQRFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYY 856
Query: 215 VRIKPAAQK--DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
V K + DCL + + + SGIIY S KEC+ + + L+ GL AYHA
Sbjct: 857 VLPKKPKKVALDCL----EWIRKHHPYDSGIIYCLSRKECDTMADTLQREGLAALAYHAG 912
Query: 273 LESN-------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L + +IAFG+GIDKP+VRFV+H L KS+E +YQ S G
Sbjct: 913 LSDSARDEVQHKWINQDNCQVICATIAFGMGIDKPDVRFVVHASLPKSVEGYYQESGRAG 972
>gi|409046313|gb|EKM55793.1| hypothetical protein PHACADRAFT_95968 [Phanerochaete carnosa
HHB-10118-sp]
Length = 620
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/332 (32%), Positives = 167/332 (50%), Gaps = 36/332 (10%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--------------DRVRSVL 59
L++ F L FRPNQL A ++ D ++MPT S D V V+
Sbjct: 96 TLRNAFGLRTFRPNQLEACTASMQGHDVFVLMPTGGGKSLCFQLPAVVKNAQMDGVTVVI 155
Query: 60 KSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKL 119
L +Q++A+ +K + T + L T +LY +PEKL
Sbjct: 156 SP---LVSLMHDQVSALRAKGVKVACFVGDQTSEEANNVHQMLKTPRHRPAILYATPEKL 212
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
KS+ LQ +Y+AG L RI DE HC +WG +FR Y+ + ++ +P VP++ LT
Sbjct: 213 DKSERLKNDLQALYEAGLLVRIVADEAHCIVTWGRNFRDSYKDFTWIRDRYPSVPVIALT 272
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATA + + D+ L++ +CV FNRPNL YEVR + + D++A +++ ++R
Sbjct: 273 ATANKQAIQDIIARLRMRNCVQYAMSFNRPNLLYEVRERGSVNV-MKDDIARMINSQYRG 331
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAF 281
++GIIY +S +CE ++LR G+ YHA L + +IAF
Sbjct: 332 KTGIIYYSSRDKCETFAKQLRKAGIVAEHYHASLPVSEKERVQQQWQAGHVKVIVATIAF 391
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
G+GIDKP+VRFVIH L S+ ++YQ + G
Sbjct: 392 GMGIDKPDVRFVIHCSLPNSLSDYYQETGRAG 423
>gi|237830999|ref|XP_002364797.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
gi|211962461|gb|EEA97656.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
gi|221507678|gb|EEE33282.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
Length = 932
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 128/370 (34%), Positives = 187/370 (50%), Gaps = 64/370 (17%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DR 54
++PW+ + + F + DFR NQ +N L DA++IMPT S D
Sbjct: 141 DFPWTSALETAALRFFGIRDFRFNQREVMNTILSSHDALLIMPTGGGKSLCFQLPALIDG 200
Query: 55 VRSVLKSKFN-LTDFRPNQLAAINIALLKKDAIIIMPTG------------KLLKKKKIC 101
S L + L +Q+AA+ L+ A + T K L+ K
Sbjct: 201 AASRLTLIVSPLLSLMADQVAALRA--LRLHAFYLSATSSKDEKDEASRVLKRLEGKAAA 258
Query: 102 LMTE----------------SSSLKLLY--VSPEKLAKSKSFMTKLQKMYKAGCLARIAI 143
++ S +L ++ V+PE++AKSK M++L+K++ A L I +
Sbjct: 259 SQSQKGQKTENRSAVSPDRSSENLGAVFVYVTPERIAKSKKLMSQLEKIHAAKNLGLIVV 318
Query: 144 DEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIK 203
DE HC S WGH FR DY+ L +LKT FP VP+L LTATAT V+ D++KML I V +
Sbjct: 319 DEAHCASQWGHSFRQDYRQLILLKTQFPRVPLLALTATATPPVVDDIKKMLHIPYSRVFR 378
Query: 204 APFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRG 263
+ NR NLFY V KP ++ + +AD + + F QSGI+Y S KE E L L+ R
Sbjct: 379 SHTNRANLFYHVVHKPKTSEEQIRLIADFI-KAFNGQSGILYCLSRKEAETLCVALK-RD 436
Query: 264 LRVSA--YHAKLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSME 303
R+S YH L++N ++AFG+GI+K +VRFV+HH L KS++
Sbjct: 437 FRISCAFYHGDLDANSRLEIHRQWSTGYISVVVATVAFGMGINKADVRFVVHHSLPKSLD 496
Query: 304 NFYQVSIAFG 313
N+YQ + G
Sbjct: 497 NYYQETGRAG 506
>gi|149057328|gb|EDM08651.1| Bloom syndrome homolog (human) (predicted), isoform CRA_a [Rattus
norvegicus]
gi|149057329|gb|EDM08652.1| Bloom syndrome homolog (human) (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 999
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 124/360 (34%), Positives = 173/360 (48%), Gaps = 76/360 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD----------------------- 40
N+P + + + + KF L +FR NQL AIN ALL +D
Sbjct: 639 NFPHTKEMMKIFRKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 698
Query: 41 --AIIIMPTDYPWSDRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
I+I P D+V+ + + + + D ++ A I + L KKD II
Sbjct: 699 GVTIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPII------- 751
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGH
Sbjct: 752 ---------------KLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGH 796
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFR DY+ +++L+ FP VP++ LTATA +V D+ L+I V FNR NL Y
Sbjct: 797 DFRQDYKRMNMLRQRFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYY 856
Query: 215 VRIKPAAQK--DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
V K + DCL + + + SGIIY S KEC+ + + L+ GL AYHA
Sbjct: 857 VLPKKPKKVALDCL----EWIRKHHPYDSGIIYCLSRKECDTMADTLQREGLAALAYHAG 912
Query: 273 LESN-------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L + +IAFG+GIDKP+VRFV+H L KS+E +YQ S G
Sbjct: 913 LSDSARDEVQHKWINQDNCQVICATIAFGMGIDKPDVRFVVHASLPKSVEGYYQESGRAG 972
>gi|146165477|ref|XP_001015163.2| ATP-dependent DNA helicase, RecQ family protein [Tetrahymena
thermophila]
gi|146145471|gb|EAR94918.2| ATP-dependent DNA helicase, RecQ family protein [Tetrahymena
thermophila SB210]
Length = 1198
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 179/339 (52%), Gaps = 37/339 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DR 54
+PW +V +L + + +FR NQ A IN L KD +MPT S D
Sbjct: 388 HPWDQKVNDILANVYGYKNFRNNQRAIINCVLENKDVFAMMPTGGGKSLTFQIPGLVQDG 447
Query: 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYV 114
V V+ +L + N + +NI +++ + ++ L ++ + K++ +
Sbjct: 448 VYIVIMPLISLISDQYNHMLRLNIPVIR----VQGARKNYQRELDSILYSDKNQSKIVLI 503
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PEK++ + F L ++Y+ L R IDE HC S WGH+FR DY L LK +P++P
Sbjct: 504 TPEKISSDEDFNQFLSQIYEKNKLRRFVIDEAHCVSQWGHEFRKDYLSLGQLKIKYPNIP 563
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
L LTATAT K +D+ ++L ++ + ++ FNR NL+Y+V P QK ++ + + +
Sbjct: 564 TLALTATATEKCKIDIIQLLNMKGTLYFQSSFNRTNLYYDVVRIP--QKVTIEHMVNFIK 621
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSA--YHAKLE------------SN---- 276
+F QSGIIY + K+ E+L +L N +++A YH + SN
Sbjct: 622 EKFNKQSGIIYCCTKKDSEELASKL-NIQYKINAAYYHGSMNDKEKEQVQQLWMSNDIQV 680
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDK +VRFVIH+ SKS+EN+YQ + G
Sbjct: 681 ICATIAFGMGIDKHDVRFVIHYTFSKSIENYYQEAGRAG 719
>gi|336375158|gb|EGO03494.1| hypothetical protein SERLA73DRAFT_83518 [Serpula lacrymans var.
lacrymans S7.3]
Length = 712
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/351 (34%), Positives = 181/351 (51%), Gaps = 52/351 (14%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLT-----D 67
+K F++ +FR Q N L +D + +MPT S ++ ++L L
Sbjct: 1 MKKVFHIDNFRLCQQGVCNANLDGRDVVCVMPTGGGKSLTYQLPAILTPGCTLVVSPLIS 60
Query: 68 FRPNQLAAINIALLKKDAIIIMPT---GKLLK-KKKICLMTESSS---------LKLLYV 114
+Q+ + A K +A+++ G+L ++ M S S +KL YV
Sbjct: 61 LMTDQILHLREAGSKFEAVMLTSGTSKGELSSILSRLTAMASSRSHSMDDFAKDIKLCYV 120
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PEK+AKSK+FM+ LQK+ LARI IDE HC SS GHDFRPDY+ L L+ FPDVP
Sbjct: 121 TPEKIAKSKTFMSLLQKLVDGAKLARIVIDEAHCVSSLGHDFRPDYKELRKLRQYFPDVP 180
Query: 175 ILGLTATATTKVMLDVQKMLQI-----------EDCVVIKAPFNRPNLFYEVRIKPAAQK 223
IL L+AT KV+ D+ K+LQ+ + V AP R NL Y V KP++
Sbjct: 181 ILALSATCPPKVLNDILKILQMKHTVDGKAATRQGTVYFSAPLYRKNLHYAVLPKPSSTT 240
Query: 224 DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRG---LRVSAYHAKLESN---- 276
++ + + + + R++SGI+Y ++ K+ E + E L ++ YH+++
Sbjct: 241 QVIEAMVEYILEKHRDESGIVYCSTKKDTESVAENLHQISGGVIKAGVYHSEVPDGKKEQ 300
Query: 277 --------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFGLGIDK NVRFV+HH +SKS++ FYQ S G
Sbjct: 301 LHRQWRQGDVQVVCATIAFGLGIDKGNVRFVLHHTMSKSLDGFYQESGRAG 351
>gi|449547748|gb|EMD38716.1| hypothetical protein CERSUDRAFT_172197, partial [Ceriporiopsis
subvermispora B]
Length = 361
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 169/332 (50%), Gaps = 34/332 (10%)
Query: 6 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS-----------DR 54
PW VR L F + FR NQL AIN L +D ++MPT S R
Sbjct: 3 PWYPEVRKKLSDVFKVESFRRNQLEAINATLDGQDVFVLMPTGGGKSLCFQLPAICETGR 62
Query: 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYV 114
+ V L +Q+ A+ + +AI + + ++ + L KLLYV
Sbjct: 63 TKGVTVVIGPLISLMDDQVQALREKGIDVEAIHKDMSSEKSREIRYRLRQSPDKPKLLYV 122
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PE++ + L +Y+ LAR A+DEVHC S WG DFR Y+ L +L+ FP VP
Sbjct: 123 TPERI-QLDGMNETLGVLYRQNLLARFAVDEVHCISEWGRDFRDAYKALDVLRKNFPKVP 181
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
I+ LT TAT +V+ D+ L+IE+CV ++ FNRPNL Y V K L ++ + ++
Sbjct: 182 IMALTGTATKRVVNDIITRLRIEECVQLRQSFNRPNLNYMVESKVGRG---LAKIVEFIN 238
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESNV---------------- 277
R ++GIIY S +CE + EL ++ + +HA+LE +
Sbjct: 239 SRHPGKTGIIYCRSRADCEQVAGELCDQYHIPAEFFHARLERDTKTQILQDWQSGACKVV 298
Query: 278 --SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+ AFG+GIDK +VRFVIH CL +S+E +YQ
Sbjct: 299 VATTAFGMGIDKADVRFVIHQCLPRSLEGYYQ 330
>gi|30690461|ref|NP_195299.2| ATP-dependent DNA helicase Q-like 3 [Arabidopsis thaliana]
gi|75334307|sp|Q9FT72.1|RQL3_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 3; AltName:
Full=RecQ-like protein 3; Short=AtRecQ3; Short=AtRecQl3
gi|11121447|emb|CAC14867.1| DNA Helicase [Arabidopsis thaliana]
gi|332661156|gb|AEE86556.1| ATP-dependent DNA helicase Q-like 3 [Arabidopsis thaliana]
Length = 713
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 175/337 (51%), Gaps = 36/337 (10%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLT----- 66
+L+ F DFR QL AI + +D +MPT S ++ ++ K L
Sbjct: 27 LLRWHFGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAKPGIVLVVSPLI 86
Query: 67 DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFM 126
NQ+ A+ + + + + K L + S++LLYV+PE +A +K FM
Sbjct: 87 ALMENQVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIA-TKGFM 145
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186
KL+K++ G L IAIDE HC SSWGHDFRP Y+ LS L+ DVP+L LTATA KV
Sbjct: 146 LKLRKLHSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLALTATAAPKV 205
Query: 187 MLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLD----ELADLMSRRFRNQSG 242
DV L + + +V+K+ FNRPN+FYEVR KD LD +L +L+ + N
Sbjct: 206 QKDVIDSLNLRNPLVLKSSFNRPNIFYEVRY-----KDLLDNAYTDLGNLL-KSCGNICA 259
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 284
IIY C+DL L + G+ +AYHA L S + ++AFG+G
Sbjct: 260 IIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMG 319
Query: 285 IDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRS 321
IDK +VR V H + KSME+FYQ S G + RS
Sbjct: 320 IDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRS 356
>gi|126273765|ref|XP_001368666.1| PREDICTED: Bloom syndrome protein [Monodelphis domestica]
Length = 1401
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/360 (33%), Positives = 173/360 (48%), Gaps = 76/360 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------- 52
++P + + + KF L FR NQL AIN LL +D ++MPT S
Sbjct: 632 DFPHTKEMMKIFHKKFGLHHFRTNQLEAINAVLLGEDCFVLMPTGGGKSLCYQLPACVSP 691
Query: 53 --------------DRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
D+V+ + + + + D ++ A I + L KKD II
Sbjct: 692 GVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEAANIYLQLSKKDPII------- 744
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGH
Sbjct: 745 ---------------KLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGH 789
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFR DY+ +++L+ FP VP++ LTATA +V D+ L+I V FNR NL Y
Sbjct: 790 DFRQDYKRMNMLRQKFPSVPMMALTATANPRVQKDILTQLKILKPQVFSMSFNRHNLKYS 849
Query: 215 VRIKPAAQK--DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
V K + DCL + + + + SGIIY S +EC+ + + L+ GL +YHA
Sbjct: 850 VLPKKPKKVAFDCL----EWIRKHHPHDSGIIYCLSRRECDTMADTLQKDGLAALSYHAG 905
Query: 273 LESN-------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L + +IAFG+GIDKP+VR+VIH L KS+E +YQ S G
Sbjct: 906 LSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRYVIHSSLPKSVEGYYQESGRAG 965
>gi|147783250|emb|CAN73069.1| hypothetical protein VITISV_005845 [Vitis vinifera]
Length = 1640
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 117/326 (35%), Positives = 170/326 (52%), Gaps = 38/326 (11%)
Query: 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-----LTDFRPN 71
F FRP Q A ++ K+D ++MPT S ++ + L+ L +
Sbjct: 315 FGNRTFRPLQHQACKASVTKRDCFVLMPTGGGKSLCYQLPATLQPGVTVVVCPLLSLIQD 374
Query: 72 QLAAINI-----ALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFM 126
Q+ +N+ A +LK+ L + S KLLYV+PE++A + +F
Sbjct: 375 QIITLNLNFGIPATFLSSQQTASQAAAVLKE----LRKDKPSCKLLYVTPERIAGNSTFF 430
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186
L+ ++ G LA +DE HC S WGHDFRPDY+ L LK FPDVP++ LTATAT V
Sbjct: 431 EILKSLHWKGQLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPDVPVMALTATATQPV 490
Query: 187 MLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYT 246
D+ L+I +V++ F+R NL YEV K K+ L +L L+ RF+N GI+Y
Sbjct: 491 RKDILNSLRIPHALVLETSFDRSNLKYEVIGK---TKEPLKQLGQLLKDRFKNLCGIVYC 547
Query: 247 TSIKECEDLREELRNR-GLRVSAYHAKLESN------------------VSIAFGLGIDK 287
S EC ++ + L + ++ YHA L + +IAFG+GI+K
Sbjct: 548 LSKSECAEVSKFLNGKCKIKTVYYHAGLSARQRIDVQKKWHTGKVHIICATIAFGMGINK 607
Query: 288 PNVRFVIHHCLSKSMENFYQVSIAFG 313
PNVRFVIH+ +SKS+EN+YQ S G
Sbjct: 608 PNVRFVIHNTMSKSIENYYQESGRAG 633
>gi|403223910|dbj|BAM42040.1| DNA helicase [Theileria orientalis strain Shintoku]
Length = 931
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 172/333 (51%), Gaps = 35/333 (10%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
++P+S +V + ++ F FR QLAAIN LL D ++M T S +
Sbjct: 220 DFPFSQKVNEINRNVFGFESFRGVQLAAINSLLLGMDCFVLMATGVGKSHCYQLPSLLLN 279
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLY 113
V +L D + + L A I +A MP + + K E + +L+
Sbjct: 280 GTVVVFSPLLSLVDDQMHSLKAHGIEAQTLNAKTTMPEFRAISKSLTDRHREYLNGSILF 339
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
++PEK KSKS ++ L+ MY+ L IDE HC S WGH FR DY+ L LK FP V
Sbjct: 340 ITPEKFDKSKSVLSLLKTMYEMDRLKLFVIDEAHCVSQWGHSFRKDYRKLGNLKNNFPTV 399
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE-LADL 232
PIL +TATAT V++D+ +L++ CV + NRPNL+ EVR K K+ +DE L L
Sbjct: 400 PILAVTATATPDVIVDITGVLRMSKCVTLITTINRPNLWLEVREK---TKNYMDEVLQIL 456
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
MS GI+Y + +C+ + E++ + G+ VS YHAK++
Sbjct: 457 MS---TTGCGIVYCLTTSDCDKVAEKIYSHGISVSVYHAKMDLEDRTRSQKLWKSGDVRI 513
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GIDKP+VR ++H S+ ++YQ
Sbjct: 514 IVATVAFGMGIDKPDVRLILHTSAPTSILSYYQ 546
>gi|388858117|emb|CCF48354.1| related to RecQ family helicase RecQL1 [Ustilago hordei]
Length = 782
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 123/379 (32%), Positives = 182/379 (48%), Gaps = 87/379 (22%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++ WSD VR S F + FR Q A IN AL ++A+++MPT S ++ ++L
Sbjct: 103 SFSWSDHVRLAAMSLFGIPSFRFCQQAVINAALDGRNAVVVMPTGGGKSLCYQLPAILTP 162
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMT----------------- 104
L + + I+L+ + + G +K + +C T
Sbjct: 163 GVTL-------VVSPLISLMTDQVLHLQEVG--IKSELLCASTSREETNAILKQIRTDTT 213
Query: 105 ---------------------ESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAI 143
++ +KLLYV+PE++AKSK ++ LQ Y+ G L+RI I
Sbjct: 214 TDPRTTFASSSKSQDSNWNQHQADGIKLLYVTPERIAKSKPCLSALQSAYEQGRLSRIVI 273
Query: 144 DEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIK 203
DE HCCS GHD+RPDY LS+L+ +FP VPI+ LTAT KV+ +++L+I D I
Sbjct: 274 DEAHCCSQMGHDYRPDYAKLSLLRRLFPKVPIMCLTATCGPKVL---KEILEIIDLPAIT 330
Query: 204 APFN--------------RPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSI 249
P N RPNL Y+V +P K + + D + +SGI+Y S
Sbjct: 331 EPDNAAPMRTIYFIAPLFRPNLKYQVVQRPKEAKAASEAIVDYILEHHAGESGIVYCLSR 390
Query: 250 KECEDLRE---ELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDKP 288
+ E + E+ N + YHA L+ +IAFG+GIDKP
Sbjct: 391 PDTEATAKALTEISNGRIATGHYHAGLDDASKQLIHTHWRTGQIQVVCATIAFGMGIDKP 450
Query: 289 NVRFVIHHCLSKSMENFYQ 307
NVRFVIH C+SKS++ +YQ
Sbjct: 451 NVRFVIHACISKSLDGYYQ 469
>gi|402220569|gb|EJU00640.1| ATP-dependent DNA helicase [Dacryopinax sp. DJM-731 SS1]
Length = 725
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 180/365 (49%), Gaps = 48/365 (13%)
Query: 2 LPNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVL 59
+ ++ WS + K F + DFR Q N + +D + +MPT S ++ ++L
Sbjct: 1 MDDFEWSGELLHRAKQVFGIQDFRFCQKGVCNANMDGRDVVCVMPTGGGKSLTYQLPALL 60
Query: 60 KSKFNLTDFRPNQLAAINIALLKKDAI-IIMPTGKL-----------LKKKKICLMTESS 107
+ L I L++ + +M TG L KKK E
Sbjct: 61 TPGTTVVISPLVSLITDQILHLREAGVEAVMLTGGTKKEESREVFNRLGKKKHAREQEEK 120
Query: 108 SLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
+KL YV+PE++AKSK+FM+ ++KM G LARI IDE HC SS GHDFRPDY+ LSIL+
Sbjct: 121 EIKLCYVTPERIAKSKTFMSLMEKMALDGRLARIVIDEAHCVSSLGHDFRPDYKKLSILR 180
Query: 168 TMFPDVPILGLTATATTKV------------MLDVQKMLQIEDCVVIKAPFNRPNLFYEV 215
+FP VPIL L+AT V ++D V +P R NL Y V
Sbjct: 181 QLFPSVPILALSATCPPSVLKDLLKILKLRPVVDGTSAPLDGGTVYFSSPLYRANLHYSV 240
Query: 216 RIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREEL--RNRG-LRVSAYHAK 272
KP + + +AD + R +SGI+Y S K+ + + + + ++G +R YHA
Sbjct: 241 LPKPPSAAGAIQAMADYILAHHRGESGIVYCLSKKDTQTVADGIAQASKGKIRTGVYHAD 300
Query: 273 LESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL 314
+E +IAFGLGIDK +VRFV+HH +SKS++ FYQ S G
Sbjct: 301 VEDAEKEGIHRRWRTGQVQVVCATIAFGLGIDKGDVRFVLHHSMSKSLDGFYQESGRAGR 360
Query: 315 -GKHS 318
GKH+
Sbjct: 361 DGKHA 365
>gi|255542856|ref|XP_002512491.1| DNA helicase hus2, putative [Ricinus communis]
gi|223548452|gb|EEF49943.1| DNA helicase hus2, putative [Ricinus communis]
Length = 586
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 118/326 (36%), Positives = 173/326 (53%), Gaps = 38/326 (11%)
Query: 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-----LTDFRPN 71
F FRP Q A ++ K+D ++MPT S ++ + LK L +
Sbjct: 201 FGNMSFRPLQHQACKASVAKRDCFVLMPTGGGKSLCYQLPATLKPGVTVVVSPLLSLIQD 260
Query: 72 QLAAINI-----ALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFM 126
Q+ +N+ A +L++ L + S KLLYV+PE++A + F+
Sbjct: 261 QIITLNLKFGIPATFLNSQQTASQAAAVLQE----LRKDKPSCKLLYVTPERIAGNLGFL 316
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186
L+ ++ G LA +DE HC S WGHDFRPDY+ L LK F DVP++ LTATAT V
Sbjct: 317 EILKCLHWKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGCLKQNFRDVPLVALTATATHSV 376
Query: 187 MLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYT 246
D+ K L+I + +V++ F+RPNL YEV K K+ L ++ L+ RF+NQ GI+Y
Sbjct: 377 REDILKALRIPNALVLETSFDRPNLKYEVIGKT---KESLKQVGQLLKDRFKNQCGIVYC 433
Query: 247 TSIKECEDLREELRNR-GLRVSAYHAKLESN------------------VSIAFGLGIDK 287
S EC ++ L ++ ++ YHA L + +IAFG+GIDK
Sbjct: 434 LSKNECIEVSNFLNDKCKIKTVYYHAGLATRQRVEVQRKWHMGEAHIVCATIAFGMGIDK 493
Query: 288 PNVRFVIHHCLSKSMENFYQVSIAFG 313
P+VRFVIH+ LSKS+E++YQ S G
Sbjct: 494 PDVRFVIHNTLSKSIESYYQESGRAG 519
>gi|395330106|gb|EJF62490.1| ATP-dependent RNA helicase [Dichomitus squalens LYAD-421 SS1]
Length = 582
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 119/333 (35%), Positives = 163/333 (48%), Gaps = 70/333 (21%)
Query: 50 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK---------------- 93
P+ +++ LK F L FRP QL AI A+ +D ++ PTG
Sbjct: 61 PYYNQILDTLKRVFGLPTFRPKQLDAICAAMDGRDVFVLFPTGSGKSLTFQLPAVCQKGV 120
Query: 94 ---------LLKKKKICL-------------MTESSSLK------------LLYVSPEKL 119
L++ + L M ES K LLYV+PE+L
Sbjct: 121 TIVVSPLLSLMRDQVQALQKIGVHCALINGDMKESERTKVKTQLRSRDKPNLLYVTPEQL 180
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
S + LQ +Y+ G L R IDE HC S WG FR Y +L+ L+ +P VPI LT
Sbjct: 181 QMSGYMQSTLQWLYEHGQLMRFVIDEAHCISDWGRRFRDSYTHLTELRKSYPKVPISALT 240
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATA +V+ D+ L I +CV +K FNR NL YEVR K + K C+DE+A L+ RF
Sbjct: 241 ATANAEVVHDIVSRLDIPNCVRLKLSFNRTNLDYEVRPK-KSHKACVDEIAALIQTRFPT 299
Query: 240 QSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKL-------------ESNV-----SIA 280
+GIIY S +CE++ +ELR R L +HA L E V ++A
Sbjct: 300 HTGIIYCHSRDKCEEVAKELRERYKLNAKHFHAGLADCDKRRVQREWSEGEVLIIVATVA 359
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
FG+GIDK +VR+VIHH L ++ N+YQ + G
Sbjct: 360 FGMGIDKADVRYVIHHTLPATLANYYQETGRAG 392
>gi|221487894|gb|EEE26126.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
Length = 932
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 127/370 (34%), Positives = 187/370 (50%), Gaps = 64/370 (17%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DR 54
++PW+ + + F + DFR NQ +N L DA++IMPT S D
Sbjct: 141 DFPWTSALETAALRFFGIRDFRFNQREVMNTILSSHDALLIMPTGGGKSLCFQLPALIDG 200
Query: 55 VRSVLKSKFN-LTDFRPNQLAAINIALLKKDAIIIMPTG------------KLLKKKKIC 101
S L + L +Q+AA+ L+ A + T K L+ K
Sbjct: 201 AASRLTLIVSPLLSLMADQVAALRA--LRLHAFYLSATSSKDEKDEASRVLKRLEGKAAA 258
Query: 102 LMTE----------------SSSLKLLY--VSPEKLAKSKSFMTKLQKMYKAGCLARIAI 143
++ S +L ++ V+PE++AKSK M++L+K++ A L I +
Sbjct: 259 SQSQKGQKTENRSAVSPDRSSENLGAVFVYVTPERIAKSKKLMSQLEKIHAAKNLGLIVV 318
Query: 144 DEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIK 203
DE HC S WGH FR DY+ L +LKT FP VP+L LTATAT V+ D++KML I V +
Sbjct: 319 DEAHCASQWGHSFRQDYRQLILLKTQFPRVPLLALTATATPPVVDDIKKMLHIPYSRVFR 378
Query: 204 APFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRG 263
+ NR NLFY V KP ++ + +AD + + F QSGI+Y + KE E L L+ R
Sbjct: 379 SHTNRANLFYHVVHKPKTSEEQIRLIADFI-KAFNGQSGILYCLTRKEAETLCVALK-RD 436
Query: 264 LRVSA--YHAKLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSME 303
R+S YH L++N ++AFG+GI+K +VRFV+HH L KS++
Sbjct: 437 FRISCAFYHGDLDANSRLEIHRQWSTGYISVVVATVAFGMGINKADVRFVVHHSLPKSLD 496
Query: 304 NFYQVSIAFG 313
N+YQ + G
Sbjct: 497 NYYQETGRAG 506
>gi|355672742|gb|AER95092.1| Bloom syndrome, RecQ helicase-like protein [Mustela putorius furo]
Length = 843
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 124/364 (34%), Positives = 175/364 (48%), Gaps = 80/364 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------- 52
++P + + + KF L +FR NQL AIN ALL +D I+MPT S
Sbjct: 70 SFPHTKEMMKIFHXKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 129
Query: 53 --------------DRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
D+V+ + + + + D ++ +I + L KKD II
Sbjct: 130 GVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPII------- 182
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGH
Sbjct: 183 ---------------KLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGH 227
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFR DY+ +++L+ FP VP++ LTATA +V D+ L+I V FNR NL Y
Sbjct: 228 DFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILQPQVFSMSFNRHNLKYY 287
Query: 215 VRIKPAAQK--DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
V K + DCL + + + + SGIIY S +EC+ + + L+ GL AYHA
Sbjct: 288 VLPKKPKKVAFDCL----EWIRKHHPHDSGIIYCLSRRECDTMADTLQKDGLAALAYHAG 343
Query: 273 LESN-------------------VSIAFGLGIDKPNVRFVIHHCL----SKSMENFYQVS 309
L + +IAFG+GIDKP+VRFVIH L KS+E +YQ S
Sbjct: 344 LSDSARDEVQHKWVNQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVPKSVEGYYQES 403
Query: 310 IAFG 313
G
Sbjct: 404 GRAG 407
>gi|291410501|ref|XP_002721547.1| PREDICTED: Bloom syndrome protein [Oryctolagus cuniculus]
Length = 1414
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 124/360 (34%), Positives = 173/360 (48%), Gaps = 76/360 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD----------------------- 40
N+P + + + KF L +FR NQL AIN ALL +D
Sbjct: 650 NFPHTKDMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACISP 709
Query: 41 --AIIIMPTDYPWSDRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
I+I P D+V+ + + + + D ++ A+I + L KKD II
Sbjct: 710 GVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEAASIYLQLSKKDPII------- 762
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGH
Sbjct: 763 ---------------KLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGH 807
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFR DY+ +++L+ FP VP++ LTATA +V D+ L+I V FNR NL Y
Sbjct: 808 DFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKIVRPQVFSMSFNRHNLKYY 867
Query: 215 VRIKPAAQK--DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
V K + DCL + + + SGIIY S +EC+ + + L+ GL AYHA
Sbjct: 868 VLPKKPKKVAFDCL----EWIRKHHPYDSGIIYCLSRRECDTMADTLQKDGLAALAYHAG 923
Query: 273 LESN-------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L + +IAFG+GIDKP+VRFVIH L KS+E +YQ S G
Sbjct: 924 LSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAG 983
>gi|341891934|gb|EGT47869.1| hypothetical protein CAEBREN_30811 [Caenorhabditis brenneri]
Length = 978
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 118/339 (34%), Positives = 177/339 (52%), Gaps = 42/339 (12%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YPWSDR 54
++ + S LKSKF FR Q I L+ D ++MPT P
Sbjct: 223 NEELYSTLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILPGVTV 282
Query: 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYV 114
V S L+S L + + ++ + I +A+ T ++ L +E+ ++KLLYV
Sbjct: 283 VVSPLRS---LIEDQKMKMKELGIGC---EALTADLTASAHEEIYSDLSSENPTIKLLYV 336
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF--PD 172
+PEK++ S + +++ G LAR IDE HC S WGHDFRPDY L+ L+ + P
Sbjct: 337 TPEKISASGRLSSVFYTLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLNTLREKYNNPP 396
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
VPI+ LTATAT K++ D + L+++D + + F R NL Y+ + P A K ++ + +
Sbjct: 397 VPIIALTATATPKIVTDARDHLKMQDSKLFISSFVRDNLKYD--LIPKAAKSLVN-VVEK 453
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------- 277
M + + +SGI+Y S KECE ++ L GL YHA L N+
Sbjct: 454 MKQLYPGKSGIVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDNLRVSVQKSWLANKFDV 513
Query: 278 ---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH+ L KS+E +YQ + G
Sbjct: 514 ICATIAFGMGIDKPDVRFVIHYSLPKSIEGYYQETGRAG 552
>gi|56603560|dbj|BAD80740.1| DNA helicase [Lentinula edodes]
Length = 945
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 108/336 (32%), Positives = 164/336 (48%), Gaps = 73/336 (21%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG--------------- 92
++P+ + L+ F L +FR NQL AI A+ +D ++MPTG
Sbjct: 380 NHPFYKEIMRNLQRVFRLKNFRQNQLEAILAAMAGRDVFVLMPTGGGKSLCYQLPAVCNG 439
Query: 93 ---------------------KLLKKKKICLMTESSSL----------------KLLYVS 115
LK K + ++ +S LLYVS
Sbjct: 440 GSTKGVTIVISPLLSLMTNQVDALKTKDVDVLVWNSETVDHGEIMRRLRGYPKPSLLYVS 499
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PEK+ S + + +Y+AG LAR +DE HC S+WGHDFR YQ L L+ +P VPI
Sbjct: 500 PEKVKDSGALKSIFADLYRAGDLARFVVDEAHCISTWGHDFREAYQCLDSLRETYPRVPI 559
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATA ++ D+ K L++++C + FNR NL Y + K A LD++ ++
Sbjct: 560 MALTATANQTMVDDIMKRLKLKNCAFFQQSFNRVNLNYLILDKKAK---ILDDIYSFINT 616
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
+ R ++GIIY +CE + +LR +GL+ +HA++ +
Sbjct: 617 KHRGETGIIYCLGRDKCEKVAGQLRQKGLKARHFHAQMSTTDKEQVLQEWQSDRIQIVVA 676
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDK NVRFVIHH L KS++ +YQ + G
Sbjct: 677 TVAFGMGIDKANVRFVIHHDLPKSLDGYYQETGRAG 712
>gi|251787844|ref|YP_003002565.1| ATP-dependent DNA helicase RecQ [Dickeya zeae Ech1591]
gi|247536465|gb|ACT05086.1| ATP-dependent DNA helicase RecQ [Dickeya zeae Ech1591]
Length = 599
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 115/325 (35%), Positives = 171/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q A IN A+ +D ++IMPT S D + V+
Sbjct: 5 QVLRETFGYQQFRPGQQAIINAAVSGRDCLVIMPTGGGKSLCYQIPALVLDGLTLVVSPL 64
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A +A A + T +++ + LKLLY++PE+L +
Sbjct: 65 ISLMKDQVDQLQAYGVA-----AACLNSTQSREQQQAVFSACRRGELKLLYIAPERLT-T 118
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
F+ +L A IAIDE HC S WGHDFRP+Y+ L +K FP +PI+ LTATA
Sbjct: 119 DGFLDQLAHWNTA----LIAIDEAHCISQWGHDFRPEYRALGQIKQQFPALPIVALTATA 174
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L + D + + F+RPN+ Y + + KP LD+L L + R +
Sbjct: 175 DETTRQDIARLLDLRDPLTNISSFDRPNIRYTLVEKFKP------LDQLW-LFIQGQRGK 227
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGI+Y S + EDL L+NRGL V AYHA LE++ ++AFG
Sbjct: 228 SGIVYCNSRAKVEDLCARLQNRGLSVGAYHAGLENDRRAQVQEAFLRDDLQVVVATVAFG 287
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 288 MGINKPNVRFVVHFDIPRNIESYYQ 312
>gi|443900420|dbj|GAC77746.1| ATP-dependent DNA helicase [Pseudozyma antarctica T-34]
Length = 800
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 122/365 (33%), Positives = 179/365 (49%), Gaps = 64/365 (17%)
Query: 7 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVR 56
WS +RS KS F + FR Q A IN A+ + A+++MPT S V
Sbjct: 107 WSSTIRSTAKSVFRIPSFRFCQEAVINAAMDARHAVVVMPTGGGKSLCYQLPAILNPGVT 166
Query: 57 SVLKSKFNLTDFRPNQLAAINI-------ALLKKDAIIIM------PTGKLLKKKKICLM 103
V+ +L + L + I + ++D+ I+ P K
Sbjct: 167 LVVSPLISLMTDQVLHLKEVGIESELLCGSTSREDSTAILKKIRHGPALAGPSKHANSNA 226
Query: 104 TESSSL---------KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
+ SS L KLLYV+PE++AKSK+F++ LQ Y+ G L+RI IDE HCCS GH
Sbjct: 227 SASSELLEDHRTDGIKLLYVTPERIAKSKTFLSALQNAYEQGRLSRIVIDEAHCCSQMGH 286
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVM------LDVQKMLQIEDCVVIK----- 203
D+RPDY LS+L+ +FP VP++ LTAT KV+ +D+ + Q ++ ++
Sbjct: 287 DYRPDYAKLSLLRRLFPKVPVMCLTATCGPKVLKEIIEIIDLPPITQPDNAAPMRTIYFT 346
Query: 204 APFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLRE---ELR 260
AP RPNL Y V +P + + D + GI+Y S + E + + EL
Sbjct: 347 APLFRPNLLYRVVQRPQQAQAASQAIVDYILAHHAGHCGIVYCLSQSDTEAMAKALMELS 406
Query: 261 NRGLRVSAYHAKLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSM 302
+R + YHA L+ +IAFG+GIDKP+VRFVIH C+SKS+
Sbjct: 407 SRRIATGTYHAGLDDASKQRIHTDWRKGRIQVVCATIAFGMGIDKPDVRFVIHACISKSL 466
Query: 303 ENFYQ 307
+ +YQ
Sbjct: 467 DAYYQ 471
>gi|343425568|emb|CBQ69103.1| related to RecQ family helicase RecQL1 [Sporisorium reilianum SRZ2]
Length = 791
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 115/364 (31%), Positives = 180/364 (49%), Gaps = 60/364 (16%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
++ WSD +R S F + FR Q A IN A+ ++DA+++MPT S
Sbjct: 106 SFSWSDTIRLAALSVFGIPSFRFCQEAVINAAMDRRDAVVVMPTGGGKSLCYQLPAILTP 165
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINI-ALLKKDAIIIMPTGKLLKKKKICLMTESSS---- 108
V V+ +L + L + I + L + + +LK+ ++ ++ S
Sbjct: 166 GVTLVVSPLISLMTDQVLHLQEVGIESQLLCGSTSREDSNAILKQIRLGTASDDRSFSSK 225
Query: 109 -------------LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHD 155
+KLLYV+PE++AKSK+ ++ LQ Y+ G L+RI IDE HCCS GHD
Sbjct: 226 SGDASWNQHQNDGIKLLYVTPERIAKSKTCLSALQSAYEQGRLSRIVIDEAHCCSQMGHD 285
Query: 156 FRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQI-----------EDCVVIKA 204
+RPDY LS+L +FP P++ LTAT KV+ ++ +++ + + + A
Sbjct: 286 YRPDYAKLSLLCRLFPKTPVMCLTATCGPKVLREIIEIMGLHAVTEPDNAAPKRTIYFTA 345
Query: 205 PFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLR---EELRN 261
P RPNL Y+V +P + + D + + SGI+Y S + E E+ N
Sbjct: 346 PLFRPNLLYQVVQRPQQANAAAEAMVDYILQHHAGHSGIVYCLSQADTEATATSLTEISN 405
Query: 262 RGLRVSAYHAKLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSME 303
++ YHA L+ +IAFG+GIDKP+VRFVIH C+SKS++
Sbjct: 406 GRIKTGRYHAGLDDQSKQAIHTDWRTGRIQVVCATIAFGMGIDKPDVRFVIHACISKSLD 465
Query: 304 NFYQ 307
+YQ
Sbjct: 466 GYYQ 469
>gi|348580071|ref|XP_003475802.1| PREDICTED: Bloom syndrome protein-like [Cavia porcellus]
Length = 1405
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 163/337 (48%), Gaps = 76/337 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---KLLKKKKICLM-- 103
+P + + + KF L +FR NQL AIN LL +D I+MPTG L + C++
Sbjct: 636 FPHTKEMMKIFHKKFGLHNFRTNQLEAINATLLGEDCFILMPTGGGKSLCYQLPACVLPG 695
Query: 104 -----------------------------------TESSSL-----------KLLYVSPE 117
+E++S+ KLLYV+PE
Sbjct: 696 VTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEAASIYLQLSKKDPIIKLLYVTPE 755
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
K+ S ++ L+ +Y+ LAR IDE HC S WGHDFRPDY+ +++L+ FP VP++
Sbjct: 756 KVCASNRLISILENLYERKLLARFVIDEAHCVSQWGHDFRPDYKRMNMLRQKFPSVPVMA 815
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK--DCLDELADLMSR 235
LTATA ++V D+ L+I V FNR NL Y V K + DCL + + +
Sbjct: 816 LTATANSRVQTDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL----EWIRK 871
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------- 276
SGIIY S EC+ + + L+ GL AYHA L
Sbjct: 872 HHPYDSGIIYCLSRWECDTMADTLQKDGLAALAYHAGLSDAARDEVQHKWINQDGCQVIC 931
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L KS+E +YQ S G
Sbjct: 932 ATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAG 968
>gi|225450636|ref|XP_002282715.1| PREDICTED: ATP-dependent DNA helicase Q-like 1-like [Vitis
vinifera]
Length = 602
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 117/326 (35%), Positives = 170/326 (52%), Gaps = 38/326 (11%)
Query: 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-----LTDFRPN 71
F FRP Q A ++ K+D ++MPT S ++ + L+ L +
Sbjct: 198 FGNRTFRPLQHQACKASVTKRDCFVLMPTGGGKSLCYQLPATLQPGVTVVVCPLLSLIQD 257
Query: 72 QLAAINI-----ALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFM 126
Q+ +N+ A +LK+ L + S KLLYV+PE++A + +F
Sbjct: 258 QIITLNLNFGIPATFLSSQQTASQAAAVLKE----LRKDKPSCKLLYVTPERIAGNSTFF 313
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186
L+ ++ G LA +DE HC S WGHDFRPDY+ L LK FPDVP++ LTATAT V
Sbjct: 314 EILKSLHWKGQLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPDVPVMALTATATQPV 373
Query: 187 MLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYT 246
D+ L+I +V++ F+R NL YEV K K+ L +L L+ RF+N GI+Y
Sbjct: 374 RKDILNSLRIPHALVLETSFDRSNLKYEVIGKT---KEPLKQLGQLLKDRFKNLCGIVYC 430
Query: 247 TSIKECEDLREELRNR-GLRVSAYHAKLESN------------------VSIAFGLGIDK 287
S EC ++ + L + ++ YHA L + +IAFG+GI+K
Sbjct: 431 LSKSECAEVSKFLNGKCKIKTVYYHAGLSARQRIDVQKKWHTGKVHIICATIAFGMGINK 490
Query: 288 PNVRFVIHHCLSKSMENFYQVSIAFG 313
PNVRFVIH+ +SKS+EN+YQ S G
Sbjct: 491 PNVRFVIHNTMSKSIENYYQESGRAG 516
>gi|328866871|gb|EGG15254.1| ATP-dependent DNA helicase RecQ family protein [Dictyostelium
fasciculatum]
Length = 834
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 112/331 (33%), Positives = 160/331 (48%), Gaps = 72/331 (21%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKL----------- 94
++PW D V S K+ F + + R Q AIN L ++D + +PT GK
Sbjct: 371 EFPWDDLVNSCAKTVFGVGELRALQKDAINAILYRRDTFVSLPTGGGKSLCFQLPALIDA 430
Query: 95 -------------------LKKKKIC-------------------LMTESSSLKLLYVSP 116
L+++ I L S+KLLYV+P
Sbjct: 431 GLTVVVSPLLALMNDQVTKLRQRGIPAAVLNSGISVSERTRTMEELENPQGSIKLLYVTP 490
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
E+L S+ F ++ + + G L R+ IDE HC S WGHDFR DY+ LS + FP VPI+
Sbjct: 491 ERLV-SEDFAKRMARWHYQGRLRRLVIDEAHCISEWGHDFRSDYRKLSSFRKTFPHVPIV 549
Query: 177 GLTATATTKVMLDVQKMLQI--EDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
LTATAT V D++ L I +D V ++ F R NL Y VR KPA+ ++ +
Sbjct: 550 ALTATATDYVEHDIKNQLGISRDDVVNVRGTFQRNNLRYAVRDKPASPIGVAMDIESFIK 609
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------ 276
R+ SGI+Y + ECE+L LR+ GL Y+A L +
Sbjct: 610 ARYPTSSGIVYCATSVECENLASHLRDVGLSAHHYYASLSTPTRLEIQDNWIKGKIKVIC 669
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+ AFG+GIDKP+ RFVIHH + +S+E++YQ
Sbjct: 670 TTTAFGMGIDKPDTRFVIHHSMPQSIESYYQ 700
>gi|411116551|ref|ZP_11389038.1| ATP-dependent DNA helicase RecQ [Oscillatoriales cyanobacterium
JSC-12]
gi|410712654|gb|EKQ70155.1| ATP-dependent DNA helicase RecQ [Oscillatoriales cyanobacterium
JSC-12]
Length = 741
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 177/328 (53%), Gaps = 35/328 (10%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN---- 64
+ S LK F FRP Q I AL +D +++MPT S ++ ++LK
Sbjct: 14 LESALKHYFGYDSFRPGQRQIIEKALQNQDLLVVMPTGGGKSLCYQLPALLKPGLTVVVS 73
Query: 65 -LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSK 123
L +Q+ A+ + + +G L++++ ++ +KL+Y++PE+L
Sbjct: 74 PLIALMQDQVQALQDNGIPATFLNSSLSGTELRERERAIL--DGEMKLVYIAPERLLNEG 131
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
L ++Y +A IAIDE HC S WGHDFRP+Y+ LS L+ F +VPI+ LTATAT
Sbjct: 132 RLAGWLSQVY----VAAIAIDEAHCVSEWGHDFRPEYRQLSQLRQWFANVPIMALTATAT 187
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
+V D+ + L ++D V+ + FNRPNL+YEVR K K EL L+ R+ SGI
Sbjct: 188 ERVRYDIIEQLNLQDPVLHVSTFNRPNLYYEVRPK---HKQSYRELLQLI-RQQAGASGI 243
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGI 285
IY S K ++L +L+ G+ YHA +++ + +IAFG+GI
Sbjct: 244 IYCLSRKRVDELTTKLQRDGISALPYHAGMDNQLRSENQSRFIRDNVQVMVATIAFGMGI 303
Query: 286 DKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+KP+VRFV+H+ L +++E +YQ S G
Sbjct: 304 NKPDVRFVVHYDLPRNIEGYYQESGRAG 331
>gi|427713763|ref|YP_007062387.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 6312]
gi|427377892|gb|AFY61844.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 6312]
Length = 730
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 115/323 (35%), Positives = 169/323 (52%), Gaps = 27/323 (8%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSD--RVRSVLKSKFNLTDFRPN 71
LK F FRP Q I +L ++D + I+PT S ++ ++LK+ L
Sbjct: 6 ALKHYFGYEAFRPGQADIITASLNQQDVLAILPTGGGKSICFQLPALLKTGITLVVSPLI 65
Query: 72 QLAAINIALLKKDAI---IIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTK 128
L + L+K+ I + T + + + +KLLYV+PE+L S SF
Sbjct: 66 ALMLDQVVALQKNGIAATFLNSTLSAAEARGRIAAIMAGEVKLLYVAPERLV-SDSFTAL 124
Query: 129 LQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVML 188
L+ +++ ++ I +DE HC S WGHDFRPDY+ LS L+ FP +P++ LTATAT +V
Sbjct: 125 LETIHQTVGISSIVVDEAHCVSEWGHDFRPDYRQLSRLRERFPTIPVIALTATATHRVRT 184
Query: 189 DVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTS 248
D+ + L ++ V A FNRPNL+YEV I+ + K L EL + SGIIY S
Sbjct: 185 DITEQLSLKKPFVHVASFNRPNLYYEV-IEKSRGKVSLSELTGYIKE--TEGSGIIYCMS 241
Query: 249 IKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNV 290
K+ E L EL G+ YHA L + ++AFG+GI+KP+V
Sbjct: 242 RKQVEKLASELNENGISALPYHAGLSNETRTDHQTRFIRDDVQIMVATVAFGMGINKPDV 301
Query: 291 RFVIHHCLSKSMENFYQVSIAFG 313
RFVIH+ L +++E +YQ S G
Sbjct: 302 RFVIHYDLPQTIEGYYQESGRAG 324
>gi|242219722|ref|XP_002475637.1| predicted protein [Postia placenta Mad-698-R]
gi|220725158|gb|EED79158.1| predicted protein [Postia placenta Mad-698-R]
Length = 457
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 115/323 (35%), Positives = 161/323 (49%), Gaps = 77/323 (23%)
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL--KKKKIC------------- 101
L+ F L+ FR NQL AI AL KD ++MPT GK L + +C
Sbjct: 6 LQDVFGLSGFRTNQLEAITAALDGKDVFLLMPTGGGKSLCYQLPAVCSSGTTKGVTVVIS 65
Query: 102 ----LMT-----------------------ESSSLK-----------LLYVSPEKLAKSK 123
LMT ES ++ LLY++PEK+ S
Sbjct: 66 PLRSLMTDQVESLQAKNVDVVYFSSDQSRDESDEVQHRLRSNGQKPSLLYLTPEKIKHSD 125
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
+ L +Y++ LAR +DE HC SSWG FR Y L+ L+ FPDVPI+ LTATAT
Sbjct: 126 ALKRDLTDLYESKMLARFVVDEAHCISSWGRQFRDSYGALAYLRKTFPDVPIMALTATAT 185
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
+ D+ L I C + FNRPNL YEVR+K +K DE+ + + + +N+SG+
Sbjct: 186 GEAKNDIIAHLGIRGCTELTQSFNRPNLNYEVRLK---KKKVTDEIVNFIVTKHKNESGV 242
Query: 244 IYTTSIKECEDLREELRNR-GLRVSAYHAKLESN------------------VSIAFGLG 284
IY +S +CE++ + LR++ GL+ YHA L+ +IA G+G
Sbjct: 243 IYCSSKVKCEEVAKNLRDKYGLKARHYHAGLDDRDRTVTMQEWKRGDFKIIVATIALGMG 302
Query: 285 IDKPNVRFVIHHCLSKSMENFYQ 307
IDK NVRFVIH+ + S+E +YQ
Sbjct: 303 IDKGNVRFVIHYAMPSSLEGYYQ 325
>gi|432093931|gb|ELK25783.1| Bloom syndrome protein [Myotis davidii]
Length = 1296
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 123/360 (34%), Positives = 172/360 (47%), Gaps = 76/360 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD----------------------- 40
N+P + + + KF L FR NQL AIN ALL +D
Sbjct: 529 NFPHTKEMMKIFHKKFGLHHFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 588
Query: 41 --AIIIMPTDYPWSDRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
I+I P D+V+ + + + + D ++ +I + L KKD II
Sbjct: 589 GVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPII------- 641
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGH
Sbjct: 642 ---------------KLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGH 686
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFR DY+ +++L+ FP VP++ LTATA +V D+ L+I V FNR NL Y
Sbjct: 687 DFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFTMSFNRHNLKYY 746
Query: 215 VRIKPAAQK--DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
V K + DCL + + + + SGIIY S +EC+ + + L+ GL AYHA
Sbjct: 747 VLPKKPKKVAFDCL----EWIRKHHPHDSGIIYCLSRRECDTMADTLQKNGLPALAYHAG 802
Query: 273 LESN-------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L + +IAFG+GIDKP+VRFVIH L KS+E +YQ S G
Sbjct: 803 LSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAG 862
>gi|383815908|ref|ZP_09971314.1| ATP-dependent DNA helicase RecQ [Serratia sp. M24T3]
gi|383295198|gb|EIC83526.1| ATP-dependent DNA helicase RecQ [Serratia sp. M24T3]
Length = 610
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 109/325 (33%), Positives = 175/325 (53%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q IN A+L KD +++MPT S D + V+
Sbjct: 15 QVLRDTFGYQQFRPGQQTIINAAILGKDCLVVMPTGGGKSLCYQIPALVMDGLTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A + +A + T +++++ S +K+LY++PE+L
Sbjct: 75 ISLMKDQVDQLMAAGV-----EAGCLNSTQTREQQQEVMAGCRSGRIKMLYIAPERLTMG 129
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
F+ +LQ+ A +A+DE HC S WGHDFRP+Y+ L LK +P +P++ LTATA
Sbjct: 130 -DFLEQLQQWNPA----MLAVDEAHCISQWGHDFRPEYRALGQLKLRYPQLPVIALTATA 184
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L++ D +V + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 185 DDATRNDIVRLLELNDPLVQVSSFDRPNIRYTLVEKFKP------LDQLLRFVQDQ-RGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S + ED L++RG+ V AYHA LE++ ++AFG
Sbjct: 238 SGIIYCGSRAKVEDTAARLQSRGISVGAYHAGLENDRRSQVQEAFQRDDVQIVVATVAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|53133486|emb|CAG32072.1| hypothetical protein RCJMB04_17c23 [Gallus gallus]
Length = 1183
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 125/340 (36%), Positives = 171/340 (50%), Gaps = 38/340 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSDR 54
+ S+ + + KF L FR NQL AIN ALL +D I+MPT S
Sbjct: 420 FSHSEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAG 479
Query: 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYV 114
V V+ +L + +L ++IA I T K + L + +KLLYV
Sbjct: 480 VTVVISPLRSLIIDQVQKLKTLDIASTYLTGDI---TDADASKTYMQLSKKDPIIKLLYV 536
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PEK+ S ++ L+ +Y LAR IDE HC S WGHDFR DY+ L++L+ F VP
Sbjct: 537 TPEKVCASNRLLSALENLYNRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVP 596
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQ--KDCLDELADL 232
++ LTATA +V D+Q L++ V FNR NL Y+V K + DCL +
Sbjct: 597 MMALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDVLPKKPKKVAMDCL----EW 652
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL-ESN--------------- 276
+ + + SGIIY S EC+ L+ GL AYHA L +SN
Sbjct: 653 IKKYHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQ 712
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VR+VIH L KS+E +YQ S G
Sbjct: 713 VICATIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAG 752
>gi|321478461|gb|EFX89418.1| DNA helicase bloom's syndrome protein A [Daphnia pulex]
Length = 1276
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/223 (42%), Positives = 134/223 (60%), Gaps = 19/223 (8%)
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KLLY++PEKL+ S + L + LAR +DE HC S WGHDFRPDY+ LS+LK
Sbjct: 607 IKLLYITPEKLSASMKLLNALNALNGRQLLARFVVDEAHCVSQWGHDFRPDYKKLSVLKE 666
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
FP VP + LTATAT +V D+ + L + + + FNRPNL Y V K + L E
Sbjct: 667 KFPTVPTMALTATATPRVRFDILRQLNMRNPKWFLSSFNRPNLKYCVLPK-KMKAGVLTE 725
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------- 277
+A+L+++RF +SGI+Y S +EC+++ + L++ ++ +YHA L +
Sbjct: 726 IAELITKRFDRKSGIVYCLSRRECDEVAQSLQSSRIKAISYHAGLSDELRSESQLKWING 785
Query: 278 -------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L KS+E +YQ S G
Sbjct: 786 TVQVVCATIAFGMGIDKPDVRFVIHFSLPKSIEGYYQESGRAG 828
>gi|413935533|gb|AFW70084.1| hypothetical protein ZEAMMB73_899248 [Zea mays]
Length = 750
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 115/323 (35%), Positives = 167/323 (51%), Gaps = 21/323 (6%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
N+PW+ + + ++KF FRPNQ IN + D ++MPT S ++ +++ S
Sbjct: 424 NFPWTKELEAKNRNKFGNHSFRPNQREIINATMSGHDVFVLMPTGGGKSLTYQLPALISS 483
Query: 62 KFNLTDFRPNQLAAINIALLKKDAI-IIMPTGKLLKKKKICLMTE--SSSLKLLYVSPEK 118
L L I L + I +G L ++ +M + S KLLYV+PEK
Sbjct: 484 GLTLVVCPLVSLIQDQIMHLSQANIPATYLSGNLDWSEQQEIMKDLMSCRYKLLYVTPEK 543
Query: 119 LAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGL 178
+AKS + L + G L+RI IDE HC S WGHDFRPDY+ L +LK FP P+L L
Sbjct: 544 IAKSGALSRLLDNLNSQGHLSRIVIDEAHCVSQWGHDFRPDYKSLGVLKQNFPKTPVLAL 603
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFR 238
TATAT +V DV + L +E+C+V K FNR NL Y +R K K C++++ +
Sbjct: 604 TATATARVKEDVVQALALENCIVFKQSFNRANLRYYLRPK---TKKCVEDIDLFIRTNHS 660
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHCL 298
+ GIIY S +CE + E+LR+ G +VS YH ++ P R I
Sbjct: 661 KECGIIYCLSRMDCEKVAEKLRDCGHKVSHYHGSMD-------------PMDRTHIQKLW 707
Query: 299 SKSMENFYQVSIAFGLGKHSFRS 321
SK N ++AFG+G F++
Sbjct: 708 SKDKINIICATVAFGMGNLIFQT 730
>gi|116180606|ref|XP_001220152.1| hypothetical protein CHGG_00931 [Chaetomium globosum CBS 148.51]
gi|88185228|gb|EAQ92696.1| hypothetical protein CHGG_00931 [Chaetomium globosum CBS 148.51]
Length = 1451
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 130/224 (58%), Gaps = 22/224 (9%)
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
++LLYV+PE + S +F +Q +Y G LARI IDE HC S WGHDFRPDY+ L +
Sbjct: 670 VQLLYVTPEMITNSPAFKKGIQTLYDKGKLARIVIDEAHCVSHWGHDFRPDYKALGTFRA 729
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
FP VP++ LTATAT VM DV+ L +E+C + FNRPNL+YEV I AA+ +
Sbjct: 730 AFPGVPVMALTATATKNVMADVKHNLSMENCEIFTQSFNRPNLYYEV-IPKAAR--FIGG 786
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN----------- 276
+ L++ ++ Q GI+Y S K E L + ++ YHA+++
Sbjct: 787 MGKLITTKYPGQCGIVYCLSRKSAEGTATALVTKHNIKARYYHAQMDPEAKVEVQEKWQK 846
Query: 277 -------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH + KS+E +YQ + G
Sbjct: 847 GEVHVVVATIAFGMGIDKPDVRFVIHQNMPKSLEGYYQETGRAG 890
>gi|149690733|ref|XP_001502766.1| PREDICTED: Bloom syndrome protein [Equus caballus]
Length = 1421
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 123/360 (34%), Positives = 171/360 (47%), Gaps = 76/360 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD----------------------- 40
++P + + + KF L FR NQL AIN ALL +D
Sbjct: 654 SFPHTKEMMKIFHKKFGLHHFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 713
Query: 41 --AIIIMPTDYPWSDRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
I+I P D+V+ + + + + D ++ +I + L KKD II
Sbjct: 714 GVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPII------- 766
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S +T L+ +Y+ LAR IDE HC S WGH
Sbjct: 767 ---------------KLLYVTPEKVCASNRLITTLENLYERKLLARFVIDEAHCVSQWGH 811
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFR DY+ +++L+ FP VP++ LTATA +V D+ L+I V FNR NL Y
Sbjct: 812 DFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILSPQVFSMSFNRHNLKYY 871
Query: 215 VRIKPAAQK--DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
V K + DCL + + + SGIIY S +EC+ + + L+ GL AYHA
Sbjct: 872 VLPKKPKKVAFDCL----EWIRKHHPYDSGIIYCLSRRECDTMADTLQKDGLAALAYHAG 927
Query: 273 LESN-------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L + +IAFG+GIDKP+VRFVIH L KS+E +YQ S G
Sbjct: 928 LSDSARDAVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAG 987
>gi|296089753|emb|CBI39572.3| unnamed protein product [Vitis vinifera]
Length = 591
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 121/343 (35%), Positives = 174/343 (50%), Gaps = 53/343 (15%)
Query: 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS-------------------------D 53
F FRP Q A ++ K+D ++MPT S D
Sbjct: 168 FGNRTFRPLQHQACKASVTKRDCFVLMPTGGGKSLCYQLPATLQPGVTVVVCPLLSLIQD 227
Query: 54 RVRSVLKSKFNL-TDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE---SSSL 109
++ + L F + F +Q A A + K+ ++ P G + + L E S
Sbjct: 228 QIIT-LNLNFGIPATFLSSQQTASQAAAVLKELRLLFP-GICFQNCYLLLSFEVKDKPSC 285
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169
KLLYV+PE++A + +F L+ ++ G LA +DE HC S WGHDFRPDY+ L LK
Sbjct: 286 KLLYVTPERIAGNSTFFEILKSLHWKGQLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQN 345
Query: 170 FPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDEL 229
FPDVP++ LTATAT V D+ L+I +V++ F+R NL YEV K K+ L +L
Sbjct: 346 FPDVPVMALTATATQPVRKDILNSLRIPHALVLETSFDRSNLKYEVIGKT---KEPLKQL 402
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN------------ 276
L+ RF+N GI+Y S EC ++ + L + ++ YHA L +
Sbjct: 403 GQLLKDRFKNLCGIVYCLSKSECAEVSKFLNGKCKIKTVYYHAGLSARQRIDVQKKWHTG 462
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GI+KPNVRFVIH+ +SKS+EN+YQ S G
Sbjct: 463 KVHIICATIAFGMGINKPNVRFVIHNTMSKSIENYYQESGRAG 505
>gi|347800747|ref|NP_001007088.2| Bloom syndrome protein homolog [Gallus gallus]
Length = 1380
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/340 (36%), Positives = 171/340 (50%), Gaps = 38/340 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSDR 54
+ S+ + + KF L FR NQL AIN ALL +D I+MPT S
Sbjct: 617 FSHSEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAG 676
Query: 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYV 114
V V+ +L + +L ++IA I T K + L + +KLLYV
Sbjct: 677 VTVVISPLRSLIIDQVQKLKTLDIASTYLTGDI---TDADASKTYMQLSKKDPIIKLLYV 733
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PEK+ S ++ L+ +Y LAR IDE HC S WGHDFR DY+ L++L+ F VP
Sbjct: 734 TPEKVCASNRLLSALENLYNRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVP 793
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQ--KDCLDELADL 232
++ LTATA +V D+Q L++ V FNR NL Y+V K + DCL +
Sbjct: 794 MMALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDVLPKKPKKVAMDCL----EW 849
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL-ESN--------------- 276
+ + + SGIIY S EC+ L+ GL AYHA L +SN
Sbjct: 850 IKKYHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQ 909
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VR+VIH L KS+E +YQ S G
Sbjct: 910 VICATIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAG 949
>gi|431795569|ref|YP_007222473.1| ATP-dependent DNA helicase RecQ [Echinicola vietnamensis DSM 17526]
gi|430786334|gb|AGA76463.1| ATP-dependent DNA helicase RecQ [Echinicola vietnamensis DSM 17526]
Length = 725
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/327 (35%), Positives = 173/327 (52%), Gaps = 42/327 (12%)
Query: 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVL 59
+++ LK F FR NQ A ++ L + +IMPT S + V+
Sbjct: 4 KIKENLKKIFGFNQFRGNQEAIVDNILQGNNTFVIMPTGAGKSLCYQLPAVTKEGTAIVI 63
Query: 60 KSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKL 119
L + +QL A I +A + T + K+ S + KLLYV+PE L
Sbjct: 64 SPLIALMKNQVDQLNAFGI-----NAHFLNSTLSKTETNKVKKEVLSGATKLLYVAPESL 118
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGL 178
K ++ + K+ L+ +AIDE HC S WGHDFRP+Y+ + SI+ + +PI+ L
Sbjct: 119 TKEENV-----EFLKSAQLSFVAIDEAHCISEWGHDFRPEYRKIKSIIAQIGDALPIIAL 173
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFR 238
TATAT KV D+Q+ L +E+ + K+ FNR NLFYEVR P A+ D L + + +
Sbjct: 174 TATATPKVQQDIQRNLNMEEADLFKSSFNRTNLFYEVR--PKAKSDTKKHLIKYVKSQ-K 230
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S K+ E++ E L+ G+ + YHA LES + +IA
Sbjct: 231 GKSGIIYCLSRKKVEEIAELLKVNGINAAPYHAGLESAMRIKNQDDFLNEEVDVVVATIA 290
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GIDKP+VR+VIH+ + KS+E +YQ
Sbjct: 291 FGMGIDKPDVRYVIHYDVPKSLEGYYQ 317
>gi|123426519|ref|XP_001307056.1| ATP-dependent DNA helicase, RecQ family protein [Trichomonas
vaginalis G3]
gi|121888663|gb|EAX94126.1| ATP-dependent DNA helicase, RecQ family protein [Trichomonas
vaginalis G3]
Length = 1279
Score = 182 bits (463), Expect = 2e-43, Method: Composition-based stats.
Identities = 115/337 (34%), Positives = 177/337 (52%), Gaps = 38/337 (11%)
Query: 4 NYPWSDRVRSVL----KSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSD 53
NY D +VL K+ F FR QL AI A+ D I+MPT Y +
Sbjct: 548 NYGLPDEYINVLNEVNKNVFGHDSFRGVQLPAIAAAVRGNDVFILMPTGGGKSLCYMLTG 607
Query: 54 RVRS----VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSL 109
V+ V+ +L + +QL ++NI A +I K ++ KI + +
Sbjct: 608 MVQGGVTLVISPLLSLIKDQVDQLKSLNI-----QAELINYETKQEEESKILNEAKQGRV 662
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169
+ LY++PEKL S + L +Y L RI +DE HC S WGHDFRPDY + ++
Sbjct: 663 RFLYMTPEKLNLSGNVSQFLNDIYSQNKLTRIVVDEAHCVSHWGHDFRPDYMQIGKVREN 722
Query: 170 FPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDEL 229
+P+VP++ LTATAT KV+ D + L +++ + FNRPN+ +EV K + C +++
Sbjct: 723 YPEVPLMALTATATQKVIEDCYEQLCMKNVEIFHQTFNRPNINFEVHAKEGTTEGCYNQI 782
Query: 230 ADLMSRR-FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL--------------- 273
+ + ++ + N SGII+ + + E++ L RGLR YH K+
Sbjct: 783 VNWIYQKGYDNASGIIFCMTTRTTEEMSIYLNQRGLRTLHYHGKMDMEHRKDTQDRWMRN 842
Query: 274 ESNV---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
E N+ ++AFG+GI+KP+VRFVIHH + KS+E +YQ
Sbjct: 843 EINIVVATLAFGMGINKPDVRFVIHHSIPKSIEEYYQ 879
>gi|345095759|gb|AEN67421.1| helicase [Heliconius numata arcuella]
gi|345095793|gb|AEN67438.1| helicase [Heliconius numata aurora]
gi|345095805|gb|AEN67444.1| helicase [Heliconius numata silvana]
gi|345095821|gb|AEN67452.1| helicase [Heliconius numata silvana]
gi|345095829|gb|AEN67456.1| helicase [Heliconius numata silvana]
Length = 245
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 2 MFPNIPILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 61
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 62 LEKLLKXRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 121
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 122 XYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 164
>gi|67605840|ref|XP_666710.1| DEAD/DEAH box helicase [Cryptosporidium hominis TU502]
gi|54657750|gb|EAL36476.1| DEAD/DEAH box helicase [Cryptosporidium hominis]
Length = 990
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 115/347 (33%), Positives = 175/347 (50%), Gaps = 42/347 (12%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------- 52
++ WS+ ++ + + F FR NQ +N + ++D ++MPT S
Sbjct: 218 DFEWSEDMKRINEQVFGNESFRSNQRQIMNAVVSQRDVFVMMPTGGGKSLCFQLPGLLKY 277
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLK-------KDAIIIMPTGKLLKKKKICLMTE 105
+ SV L +Q+ +NI +K + A + LLKK
Sbjct: 278 NNPASVTVVIMPLVALMVDQIEQLNILGIKCASLNSNQSADELNHITSLLKKG-----DP 332
Query: 106 SSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSI 165
+ L+V+PEKL SK+ + L+++ L R AIDE HC WG DFRPDY L
Sbjct: 333 ETCPAFLFVTPEKLKHSKTLFSLLKQINDESRLLRFAIDEAHCVCQWGFDFRPDYIQLCK 392
Query: 166 LKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDC 225
L+ FP+VPI+ LTATAT ++ DV K L++ + F+RPNL YEVR K ++K
Sbjct: 393 LREEFPNVPIIALTATATHSILSDVIKQLKMRSPTIFSLSFDRPNLKYEVRAKSGSKKKM 452
Query: 226 LDELADLM-SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN-------- 276
L+E+ +L+ S RF + IIY S ECE++ ++L G+ + YH ++ +
Sbjct: 453 LNEICELLRSPRFCRSTSIIYCLSRNECEEVSKDLNKEGISATYYHGSMKEDKRNLAQRR 512
Query: 277 ----------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GI+K +VR VIH + KS+EN+YQ S G
Sbjct: 513 WMNDEKQVMVATIAFGMGINKKDVRLVIHLSMPKSLENYYQESGRAG 559
>gi|392585074|gb|EIW74415.1| ATP-dependent DNA helicase [Coniophora puteana RWD-64-598 SS2]
Length = 885
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/357 (33%), Positives = 173/357 (48%), Gaps = 52/357 (14%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YP 50
+ W+ +++ ++ F + +FR Q N + +D + +MPT P
Sbjct: 125 EFEWNQQLKGTMRQVFGIREFRLCQQGVCNANMDGRDIVCVMPTGGGKSLTYQLPALLAP 184
Query: 51 WSDRVRSVLKSKF--NLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS 108
V S L S + + N++ A+ + A + +L +
Sbjct: 185 GCTLVISPLISLMTDQILHLQENKIEAVMLTSATPKAQVNAAEARLYA---MARGDADRE 241
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KL YV+PE++AK+K F + LQ++ G LARI IDE HC S GHDFRPDYQ LS L+
Sbjct: 242 IKLCYVTPERIAKNKKFSSLLQRLSDGGQLARIVIDEAHCVSQLGHDFRPDYQKLSTLRQ 301
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQI-----------EDCVVIKAPFNRPNLFYEVRI 217
F VPIL L+AT VM D+ K L++ + V AP R NL Y V
Sbjct: 302 FFSQVPILALSATCPPAVMRDILKTLKMKPTVDGTAAPRDGTVCFTAPLYRKNLHYTVLP 361
Query: 218 KPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLRE---ELRNRGLRVSAYHAKLE 274
KPAA KD L +AD + +++SGIIY K+ E++ + EL ++ YHA++
Sbjct: 362 KPAASKDVLTVMADYIRFNHKDESGIIYCLKRKDAENVAQVLHELSKGQIKTGVYHAEVG 421
Query: 275 SN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFGLGIDK NVRFVIHH +K+++ +YQ S G
Sbjct: 422 DAEKEHLHKQWRSGAVQVVCATIAFGLGIDKGNVRFVIHH--TKTLDGYYQESGRAG 476
>gi|403173011|ref|XP_003332116.2| hypothetical protein PGTG_13483 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375170091|gb|EFP87697.2| hypothetical protein PGTG_13483 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1231
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 119/345 (34%), Positives = 174/345 (50%), Gaps = 44/345 (12%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRSV 58
+PWS V L F L +R NQ+ AIN L KD ++MPT Y VRS
Sbjct: 448 HPWSRDVGKALVKIFKLHTWRHNQIDAINTTLSGKDCFVLMPTGGGKSLCYQLPAVVRSG 507
Query: 59 LKSKFN-----LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE----SSSL 109
+ L +Q+ A+ + A TG + +++ +M + +L
Sbjct: 508 VTKGVTIVISPLISLITDQVQALCAKHIGAAAF----TGSMTAQERENVMNDLRSVDPAL 563
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLS-ILKT 168
L+YV+PE + +S L + LAR DE HC S WGHDFRPDY+ + +L+
Sbjct: 564 CLVYVTPEMIMRSSVLSNILTDLKNRKLLARFVFDEAHCVSQWGHDFRPDYKDIGPMLRK 623
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
F ++P + LTATA +V DV L+I C V+ FNR NL YEVR K KD L++
Sbjct: 624 EFKNIPFIALTATANHRVQQDVMSNLKITGCRVLTQSFNRINLRYEVRPK---TKDVLND 680
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSA--YHAKLESN---------- 276
+ +++ + +SGIIY S K+CE++ L + R++A YHA + +
Sbjct: 681 IIQIITVDHKGESGIIYCLSKKQCEEVAAHLSAKN-RITAHHYHAGMSKDDRQKIQHGWQ 739
Query: 277 --------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIHH + S+E +YQ + G
Sbjct: 740 VGKLQVICATIAFGMGIDKPDVRFVIHHSMPSSLEGYYQETGRAG 784
>gi|345095743|gb|AEN67413.1| helicase [Heliconius numata illustris]
Length = 245
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 2 MFPNIPILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 61
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 62 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 121
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 122 GYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 164
>gi|345095807|gb|AEN67445.1| helicase [Heliconius numata silvana]
Length = 245
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 2 MFPNIPILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 61
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 62 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 121
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 122 GYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 164
>gi|345095749|gb|AEN67416.1| helicase [Heliconius numata illustris]
gi|345095771|gb|AEN67427.1| helicase [Heliconius numata aurora]
gi|345095777|gb|AEN67430.1| helicase [Heliconius numata aurora]
Length = 245
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 2 MFPNIPILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 61
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 62 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 121
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 122 GYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 164
>gi|345095745|gb|AEN67414.1| helicase [Heliconius numata illustris]
Length = 245
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 2 MFPNIPILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 61
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 62 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 121
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 122 GYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 164
>gi|345095801|gb|AEN67442.1| helicase [Heliconius numata aurora]
Length = 245
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 2 MFPNIPILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 61
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 62 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVXMKWHAK 121
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 122 XYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 164
>gi|196013025|ref|XP_002116374.1| hypothetical protein TRIADDRAFT_30770 [Trichoplax adhaerens]
gi|190580965|gb|EDV21044.1| hypothetical protein TRIADDRAFT_30770 [Trichoplax adhaerens]
Length = 752
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 120/358 (33%), Positives = 174/358 (48%), Gaps = 97/358 (27%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMP----------------- 90
++ +S++++ + +SKF L FR NQL AIN ALL D I+MP
Sbjct: 63 NHHFSNKMKEIFRSKFGLHKFRTNQLEAINAALLGYDCFILMPTGGGKSLCYQLPAIVND 122
Query: 91 ------------------------------TGKLLKKKKICLMTE----SSSLKLLYVSP 116
TG++ K+ + E S+ LLY++P
Sbjct: 123 GVTVVISPLRSLIQDQVQGLLNLDFPVGQFTGEMTMKENNEMYQELYKRIPSISLLYLTP 182
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHC---------CS-----------SWGHDF 156
EKL+ S ++ L+ ++ L+R IDE HC CS WGHDF
Sbjct: 183 EKLSASSKLLSVLRSLHLRKMLSRFVIDEAHCISQVTTYASCSLCIYNISCTYLQWGHDF 242
Query: 157 RPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV- 215
RPDY+ LS ++ FP VP++ LTATAT +V D+ L++ + + FNRPNL Y V
Sbjct: 243 RPDYKKLSAIRENFPGVPVMALTATATPRVRKDILNQLKVPNPIWFVQSFNRPNLQYSVL 302
Query: 216 -RIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 274
+ K AQ E+ +++ +FRN+SGI+Y S EC+ + LR G+ +YHA L+
Sbjct: 303 PKNKCTAQ-----EIIKIVNSQFRNESGIVYCLSRNECDRVSSTLREAGIAALSYHAGLD 357
Query: 275 ----SNV---------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+NV +IAFG+GIDK +VRFVIH+ L KS E +YQ S G
Sbjct: 358 AKERTNVQKRWITENRCKIVCATIAFGMGIDKADVRFVIHYSLPKSTEGYYQESGRAG 415
>gi|66475914|ref|XP_627773.1| RecQ bloom helicase (RNA helicase+hrdc) [Cryptosporidium parvum
Iowa II]
gi|32399019|emb|CAD98259.1| DEAD/DEAH box helicase [Cryptosporidium parvum]
gi|46229189|gb|EAK90038.1| RecQ bloom helicase (RNA helicase+hrdc) [Cryptosporidium parvum
Iowa II]
Length = 990
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 115/347 (33%), Positives = 175/347 (50%), Gaps = 42/347 (12%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------- 52
++ WS+ ++ + + F FR NQ +N + ++D ++MPT S
Sbjct: 218 DFEWSEDMKRINEQVFGNESFRSNQRQIMNAVVSQRDVFVMMPTGGGKSLCFQLPGLLKY 277
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLK-------KDAIIIMPTGKLLKKKKICLMTE 105
+ SV L +Q+ +NI +K + A + LLKK
Sbjct: 278 NNPASVTVVIMPLVALMVDQIEQLNILGIKCASLNSNQSADELNHITSLLKKG-----DP 332
Query: 106 SSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSI 165
+ L+V+PEKL SK+ + L+++ L R AIDE HC WG DFRPDY L
Sbjct: 333 ETCPAFLFVTPEKLKHSKTLFSLLKQINDESRLLRFAIDEAHCVCQWGFDFRPDYIQLCK 392
Query: 166 LKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDC 225
L+ FP+VPI+ LTATAT ++ DV K L++ + F+RPNL YEVR K ++K
Sbjct: 393 LREEFPNVPIIALTATATHSILSDVIKQLKMRSPAIFSLSFDRPNLKYEVRAKSGSKKKM 452
Query: 226 LDELADLM-SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN-------- 276
L+E+ +L+ S RF + IIY S ECE++ ++L G+ + YH ++ +
Sbjct: 453 LNEICELLRSPRFCRSTSIIYCLSRNECEEVSKDLNKEGISATYYHGSMKEDKRNLAQRR 512
Query: 277 ----------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GI+K +VR VIH + KS+EN+YQ S G
Sbjct: 513 WMNDEKQVMVATIAFGMGINKKDVRLVIHLSMPKSLENYYQESGRAG 559
>gi|345095797|gb|AEN67440.1| helicase [Heliconius numata aurora]
Length = 245
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 2 MFPNIPILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 61
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 62 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSXVHMKWHAK 121
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 122 EYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 164
>gi|345095765|gb|AEN67424.1| helicase [Heliconius numata aurora]
gi|345095815|gb|AEN67449.1| helicase [Heliconius numata silvana]
gi|345095841|gb|AEN67462.1| helicase [Heliconius numata silvana]
Length = 245
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 2 MFPNIPILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 61
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 62 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 121
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 122 XYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 164
>gi|345095757|gb|AEN67420.1| helicase [Heliconius numata arcuella]
gi|345095767|gb|AEN67425.1| helicase [Heliconius numata aurora]
Length = 245
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 2 MFPNIPILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 61
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 62 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 121
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 122 GYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 164
>gi|345095781|gb|AEN67432.1| helicase [Heliconius numata aurora]
Length = 245
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 2 MFPNIPILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 61
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 62 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 121
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 122 EYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 164
>gi|327265368|ref|XP_003217480.1| PREDICTED: Bloom syndrome protein homolog [Anolis carolinensis]
Length = 1383
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 128/351 (36%), Positives = 172/351 (49%), Gaps = 58/351 (16%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------- 52
++P S+ + V +F L FR NQ AIN ALL +D ++MPT S
Sbjct: 627 SFPHSNEMMKVFHKRFGLHHFRTNQQEAINAALLGEDCFVLMPTGGGKSLCYQLPACILV 686
Query: 53 ------DRVRSVLKSKFN-LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE 105
+RS++ + LT + A + K DA +L KK I
Sbjct: 687 GVTIVISPLRSLIVDQVQKLTSM---DIPATYLTGDKTDAEASRIYMQLSKKDPI----- 738
Query: 106 SSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSI 165
+KLLYV+PEK+ S M+ L+ +Y+ LAR IDE HC S WGHDFR DY+ L++
Sbjct: 739 ---IKLLYVTPEKVCSSGRLMSTLENLYQRQLLARFVIDEAHCVSQWGHDFRQDYKRLNM 795
Query: 166 LKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV---RIKPAAQ 222
L+ F VP++ LTATA +V D+ L++ V FNR NL Y+V R K A
Sbjct: 796 LRKKFASVPMMALTATANPRVQKDILNQLEMLKPQVFSMSFNRHNLKYDVLPKRPKSVAL 855
Query: 223 KDCLDELADLMSRRFRN-QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---- 277
DCL + R++ SGIIY S EC+ + L+ GL AYHA L
Sbjct: 856 -DCLQWI-----RKYHPYDSGIIYCLSRYECDSMASNLQKAGLSALAYHAGLPDETRDIV 909
Query: 278 ---------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L KS+E +YQ S G
Sbjct: 910 QQKWINQDGCQIICATIAFGMGIDKPDVRFVIHASLPKSIEGYYQESGRAG 960
>gi|345095825|gb|AEN67454.1| helicase [Heliconius numata silvana]
Length = 245
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 2 MFPNIPILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 61
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 62 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 121
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 122 GYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 164
>gi|345095753|gb|AEN67418.1| helicase [Heliconius numata aurora]
Length = 244
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 1 MFPNIPILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 60
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 61 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 120
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 121 GYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 163
>gi|345095751|gb|AEN67417.1| helicase [Heliconius numata illustris]
gi|345095761|gb|AEN67422.1| helicase [Heliconius numata aurora]
gi|345095763|gb|AEN67423.1| helicase [Heliconius numata aurora]
gi|345095775|gb|AEN67429.1| helicase [Heliconius numata aurora]
gi|345095783|gb|AEN67433.1| helicase [Heliconius numata aurora]
gi|345095789|gb|AEN67436.1| helicase [Heliconius numata aurora]
gi|345095791|gb|AEN67437.1| helicase [Heliconius numata aurora]
gi|345095795|gb|AEN67439.1| helicase [Heliconius numata aurora]
gi|345095799|gb|AEN67441.1| helicase [Heliconius numata aurora]
gi|345095803|gb|AEN67443.1| helicase [Heliconius numata aurora]
gi|345095809|gb|AEN67446.1| helicase [Heliconius numata silvana]
gi|345095813|gb|AEN67448.1| helicase [Heliconius numata silvana]
gi|345095823|gb|AEN67453.1| helicase [Heliconius numata silvana]
gi|345095827|gb|AEN67455.1| helicase [Heliconius numata silvana]
gi|345095831|gb|AEN67457.1| helicase [Heliconius numata silvana]
gi|345095833|gb|AEN67458.1| helicase [Heliconius numata silvana]
gi|345095843|gb|AEN67463.1| helicase [Heliconius numata silvana]
Length = 245
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 2 MFPNIPILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 61
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 62 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 121
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 122 GYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 164
>gi|345095741|gb|AEN67412.1| helicase [Heliconius numata aurora]
gi|345095837|gb|AEN67460.1| helicase [Heliconius numata silvana]
gi|345095839|gb|AEN67461.1| helicase [Heliconius numata silvana]
Length = 245
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 2 MFPNIPILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 61
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 62 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 121
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 122 EYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 164
>gi|345095819|gb|AEN67451.1| helicase [Heliconius numata silvana]
Length = 245
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 2 MFPNIPILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 61
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 62 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRFDVHMKWHAK 121
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 122 GYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 164
>gi|354683879|gb|AER35068.1| ATP-dependent DNA helicase [Dictyostelium lacteum]
Length = 748
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 174/339 (51%), Gaps = 34/339 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS------------ 52
+ W V K F FR Q AIN L KD I +PT S
Sbjct: 268 FEWDRVVSECNKMVFGNDSFRRLQKEAINAILSNKDTFISLPTGGGKSLCFQLPALIGKD 327
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLL 112
V V+ L + ++L ++ + + ++ + + K + ++ L + S+KLL
Sbjct: 328 AGVNIVISPLLALMQDQLSKLKSLGVPVETLNSQLSISERKRVFQE---LNNINCSIKLL 384
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
YV+PE+ + S F L ++ G L R+ +DE H S WGHDFRP Y+ LS+ + FP
Sbjct: 385 YVTPERFSGS-DFQEILVNIHDRGQLKRLIVDEAHSISEWGHDFRPSYRRLSLFRKQFPG 443
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
+PI+ LTATAT +V D++ LQ+ V I++ F R NL Y+VR+K + L ++
Sbjct: 444 LPIVALTATATDRVEKDIKSSLQMRSIVNIRSSFMRSNLIYQVRLKSQDSQSVLTDIYAY 503
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
+S+++ +SGIIY + K+CE + E L +RGL YHA L+ +
Sbjct: 504 ISKKYPKESGIIYCATTKDCEIISEYLSSRGLDTCFYHASLKPSQRIQLQNDWTEGRFKV 563
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDK N RFVIHH + +S+E +YQ + G
Sbjct: 564 VCTTIAFGMGIDKSNTRFVIHHTIPQSIEAYYQQTGRAG 602
>gi|345095747|gb|AEN67415.1| helicase [Heliconius numata illustris]
Length = 245
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 2 MFPNIPILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 61
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 62 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 121
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 122 GYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 164
>gi|345095817|gb|AEN67450.1| helicase [Heliconius numata silvana]
Length = 245
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCJ
Sbjct: 2 MFPNIPILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCJSI 61
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 62 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 121
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 122 GYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 164
>gi|261870784|gb|ACY02250.1| helicase [Heliconius cydno]
gi|261870788|gb|ACY02252.1| helicase [Heliconius cydno]
Length = 302
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 1 MFPNIPILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 60
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 61 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 120
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 121 GYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 163
>gi|403369477|gb|EJY84584.1| hypothetical protein OXYTRI_17569 [Oxytricha trifallax]
Length = 1341
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 115/331 (34%), Positives = 174/331 (52%), Gaps = 29/331 (8%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
+PW V ++ F FR NQ IN KD + ++PT S ++ +V
Sbjct: 249 FPWDQEVDIANQAIFGNEIFRENQREIINATKSHKDVLALIPTGGGKSLTFQLSAVTDEG 308
Query: 63 FNLTDFRPNQLAAINIALLKKDAI----IIMPTGKLLKKKKI--CLMT-ESSSLKLLYVS 115
L L N + ++ I + P +++++ C ++ KL+Y++
Sbjct: 309 VTLVIMPLLSLIEDNFSFVEDLGIPACNLSSPNQSQKEERRVYQCYNDIKNVVYKLVYLT 368
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PEKL KS M+ + +Y G + R IDEVHC S WG DFR DY +L +LK +P VP+
Sbjct: 369 PEKLVKSPGLMSAMDHLYAIGKIDRFVIDEVHCVSHWGQDFRKDYLHLDMLKQRYPKVPL 428
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
L LTATAT KV D+ K L I+D + ++ FNR NL YE+R K K+ +++ +++
Sbjct: 429 LCLTATATLKVKDDILKRLGIKDAKLFQSSFNRTNLLYEIRDKKQF-KNVTEDIVNMLRT 487
Query: 236 RFRNQSGIIYTTSIKECEDLREEL-RNRGLRVSAYHAKLESN------------------ 276
RF+ + GIIY S KEC+ L E L RN ++ YHA++ N
Sbjct: 488 RFKGKCGIIYCISRKECQKLSEILKRNYHIKCDYYHAEVSYNQRKDIQERWMKNEIQIII 547
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GI+K +VRFVIH+ + KS+E + Q
Sbjct: 548 ATIAFGMGINKKDVRFVIHYSMPKSLEGYVQ 578
>gi|345095835|gb|AEN67459.1| helicase [Heliconius numata silvana]
Length = 245
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCJ
Sbjct: 2 MFPNIPILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCJSI 61
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 62 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 121
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 122 GYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 164
>gi|345095755|gb|AEN67419.1| helicase [Heliconius numata arcuella]
Length = 245
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 2 MFPNIPILGLTATATAHVLSDVQKMLSIQXCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 61
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 62 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 121
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 122 EYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 164
>gi|358054726|dbj|GAA99652.1| hypothetical protein E5Q_06355 [Mixia osmundae IAM 14324]
Length = 768
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 117/349 (33%), Positives = 177/349 (50%), Gaps = 40/349 (11%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++ WS +R LKS +++ FRP Q A N + + + IM T S ++ ++L+
Sbjct: 145 SFAWSADLRKHLKSVWHIDTFRPLQEAVCNAVMDGRTLMAIMATGSGKSLCYQLPALLQE 204
Query: 62 KFN-----LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSP 116
L +QL ++ ++ +A+I T K + + +KLLYV+P
Sbjct: 205 GTTVIISPLLSLIHDQLYSLREVGVEAEALIGTTT-KEQTNGIMARLQRGDDIKLLYVTP 263
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+ KS+ + L K+ AG LARI IDE HC S GHDFRPDY+ L +L+ +FP+VP
Sbjct: 264 EKVVKSRRLVNVLTKLETAGNLARIVIDEAHCASQQGHDFRPDYRQLVMLRKLFPEVPFT 323
Query: 177 GLTATATTKVMLDVQKMLQIE-----------DCVVIKAPFNRPNLFYEVRIKPAAQKDC 225
+TAT + V+ D+ +L++ V+ +AP R NL Y V+ KPA+
Sbjct: 324 LVTATCSPTVLKDLLSILELPPVTEPSAANAYGTVLFRAPLYRANLHYTVKAKPASPPAL 383
Query: 226 LDELADLMSRRFRNQSGIIYTTSIKECEDLR---EELRNRGLRVSAYHAKLESN------ 276
++E+ D + R QSGI+Y S K+ E EE G+ A+HA LE
Sbjct: 384 VEEMVDFIQEYHRGQSGIVYCLSQKDTETTAQAIEEASKGGIVARAFHAGLEDAEKERCH 443
Query: 277 ------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFGLG+D P+ RFV HH LSK+++ + Q S G
Sbjct: 444 RKWRNKSIQVICATIAFGLGVDSPDCRFVFHHSLSKNLDAYLQESGRSG 492
>gi|434389644|ref|YP_007100255.1| ATP-dependent DNA helicase RecQ [Chamaesiphon minutus PCC 6605]
gi|428020634|gb|AFY96728.1| ATP-dependent DNA helicase RecQ [Chamaesiphon minutus PCC 6605]
Length = 743
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 117/337 (34%), Positives = 176/337 (52%), Gaps = 31/337 (9%)
Query: 1 MLPNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSV 58
ML + + LK F +FR Q I AL +D +++MPT S ++ ++
Sbjct: 1 MLAGSNQFETLEHALKHYFGYDEFRSGQREIITTALANRDLLVVMPTGGGKSLCFQLPAL 60
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAI---IIMPTGKLLKKKKICLMTESSSLKLLYVS 115
LK+ + L + LL + I + + +K+ + +KLLYV+
Sbjct: 61 LKNGVTIVVSPLIALMQDQVQLLANNGIPATFLNSSITTEEKRDRVAAIHNGEIKLLYVA 120
Query: 116 PEKLAKSKSFMTK-LQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
PE+L ++ F++ L +++ +A AIDE HC S WGHDFRPDY+ L+ L+ FP VP
Sbjct: 121 PERL--NQEFISNFLVDLHQEVGIAGFAIDEAHCVSEWGHDFRPDYRKLAQLRHYFPKVP 178
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
LGLTATAT +V D+ L++ + V A FNRPNL+YEVR K A L L
Sbjct: 179 WLGLTATATDRVRSDIINQLELREPHVHIASFNRPNLYYEVRRKTTAPYKEL-----LAQ 233
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------- 277
+ SGIIY S K+ ++L +L+ G++V YHA L+
Sbjct: 234 VKQSEGSGIIYCLSRKKVDELTTKLKQDGIKVVPYHAGLDGETRTKNQNSFIRDDVKVIV 293
Query: 278 -SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GI+KP+VRFVIH+ L +++E +YQ S G
Sbjct: 294 ATVAFGMGINKPDVRFVIHYDLPRNIEGYYQESGRAG 330
>gi|345095773|gb|AEN67428.1| helicase [Heliconius numata aurora]
Length = 245
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCJ
Sbjct: 2 MFPNIPILGLTATATAHVLSDVQKMLSIQXCLVIKSTFNRPNLYYKILEKPTSQEDCJSI 61
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 62 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 121
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 122 GYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 164
>gi|328865354|gb|EGG13740.1| hypothetical protein DFA_11501 [Dictyostelium fasciculatum]
Length = 1329
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 112/329 (34%), Positives = 166/329 (50%), Gaps = 33/329 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFN 64
+PW+D R + F FR NQL IN A+ D ++MPT +S+ +
Sbjct: 606 FPWTDEARRINSELFGNASFRHNQLEIINAAMDGNDVFVLMPT-----GGGKSLC---YQ 657
Query: 65 LTDFRPNQLAAIN---IALLKKDAIIIMPTGKLLK----------KKKICLMTESS--SL 109
+ + L I I+L++ + G + + K++I +S+
Sbjct: 658 IPAYMNQGLTVIISPLISLIQDQVTFLKGMGYMARSLTSATDADEKREIYADIKSTDPQT 717
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169
KLLY++PE++ + + M +Y AR+ IDE HC S WGHDFRPDY+ LS+LK+
Sbjct: 718 KLLYLTPERIVQDQGMMGIFSNLYSRQMFARVIIDEAHCVSQWGHDFRPDYKELSVLKSN 777
Query: 170 FPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDEL 229
FP +PIL LTATAT +V DV L + V K FNRPNL + V K K+ ++ +
Sbjct: 778 FPRLPILALTATATERVKADVIANLGMRSSVCFKQSFNRPNLTFAVMKK---TKEVIESI 834
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-----SIAFGLG 284
A + + + SGI+Y ++ D + G R V +IAFG+G
Sbjct: 835 ASFIKKTYPKSSGIVYC--LRLSSDFYHGSMDAGDRQRVQERWTRDRVKIICSTIAFGMG 892
Query: 285 IDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
I+KP+VRFVIHH L K++E +YQ S G
Sbjct: 893 INKPDVRFVIHHSLPKTLEGYYQESGRAG 921
>gi|345095787|gb|AEN67435.1| helicase [Heliconius numata aurora]
gi|345095811|gb|AEN67447.1| helicase [Heliconius numata silvana]
Length = 245
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 2 MFPNIPILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 61
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 62 LEKLLKFRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 121
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 122 EYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 164
>gi|157368442|ref|YP_001476431.1| ATP-dependent DNA helicase RecQ [Serratia proteamaculans 568]
gi|157320206|gb|ABV39303.1| ATP-dependent DNA helicase RecQ [Serratia proteamaculans 568]
Length = 614
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 110/325 (33%), Positives = 173/325 (53%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q IN A+ +D +++MPT S D + V+
Sbjct: 19 QVLRDTFGYQQFRPGQQTIINTAIGGQDCLVVMPTGGGKSLCYQIPALVMDGLTLVVSPL 78
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A +A A T ++ ++ S +K+LY++PE+L
Sbjct: 79 ISLMKDQVDQLLAYGVA-----AACYNSTQTREQQLEVMAGCRSGQIKMLYIAPERLMMD 133
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
SF+ +L A +A+DE HC S WGHDFRP+Y+ L +LK FPD+P++ LTATA
Sbjct: 134 -SFLDQL----GGNPPALLAVDEAHCISQWGHDFRPEYRALGLLKQRFPDMPVIALTATA 188
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L ++D +V + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 189 DESTRGDIVRLLALQDPLVQVSSFDRPNIRYTLVEKFKP------LDQLWRFVQDQ-RGK 241
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S + ED L++RGL V AYHA L+++ ++AFG
Sbjct: 242 SGIIYCNSRAKVEDTTARLQSRGLSVGAYHAGLDNDRRAQVQEAFQRDDLQVVVATVAFG 301
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 302 MGINKPNVRFVVHFDIPRNIESYYQ 326
>gi|340055704|emb|CCC50025.1| putative ATP-dependent DEAD/H DNA helicase recQ, fragment
[Trypanosoma vivax Y486]
Length = 1395
Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats.
Identities = 106/300 (35%), Positives = 149/300 (49%), Gaps = 41/300 (13%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG--KLLKKKKICLMTE 105
++PWS +R + F L +R QL +N + D +++PTG K L + L+T
Sbjct: 343 NFPWSTELRRTMVDVFGLHQYRFLQLEIMNACMDGCDVFVLLPTGGGKSLCYQLPALLTY 402
Query: 106 SSSLKL--------------------LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDE 145
+ + L +YV+PE +S F+ L ++ G L R +DE
Sbjct: 403 PAQVTLEAPRRALFAEWYSGHIIHTLVYVTPEYFGRSDHFVQSLSRLASHGLLNRFVVDE 462
Query: 146 VHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAP 205
HC S WGHDFRPDY+ L+ILK FP PI LTATAT V D+ L + + K
Sbjct: 463 AHCVSQWGHDFRPDYRKLAILKQQFPSTPISALTATATDAVQQDIVGTLGLSKALFFKGS 522
Query: 206 FNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLR 265
FNR NL Y VR + + D++ GI+Y S K CE++ LR G+R
Sbjct: 523 FNRVNLRYSVR---RVGRQVAPVVIDIIREFPPRACGIVYCLSRKNCEEMAAALRAAGIR 579
Query: 266 VSAYHAKL-ESN---------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
S YH++ E N +IAFG+GI+KP+VRFVIH + KS+E +YQ S
Sbjct: 580 ASYYHSEAGEKNEKQELWTKDELQVLCATIAFGMGINKPDVRFVIHAAMPKSIEGYYQES 639
>gi|345095769|gb|AEN67426.1| helicase [Heliconius numata aurora]
gi|345095779|gb|AEN67431.1| helicase [Heliconius numata aurora]
Length = 245
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 113/163 (69%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DC+
Sbjct: 2 MFPNIPILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCISI 61
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 62 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 121
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 122 GYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 164
>gi|452821743|gb|EME28770.1| ATP-dependent DNA helicase RecQ [Galdieria sulphuraria]
Length = 529
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 119/336 (35%), Positives = 176/336 (52%), Gaps = 38/336 (11%)
Query: 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS-----------DRVRSV 58
R+ + LK F +FRP Q I L KD + PT S +V V
Sbjct: 5 RIENNLKKYFGYENFRPLQQEVITSVLEGKDVFFLAPTGGGKSLCFQLPALLLEGKVSFV 64
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL---LYVS 115
+ L + + N+L A+NI + I+ GK K++ L+ +S +L +Y++
Sbjct: 65 ISPLVALIEDQVNKLTALNI----RAYSILSCQGKKHKERIFSLLEQSHKERLPSLIYLT 120
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE ++ ++ F L+ +Y+ + A+DE HC S WGHDFRP Y+ L ILK + D+PI
Sbjct: 121 PECVSTNR-FQKLLKSLYRNKEIGLFAVDEAHCISCWGHDFRPKYRRLEILKQLCCDIPI 179
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
L LTATAT V+ D+ L ++ C+ + FNRPN+FY+V + + +D+L +S
Sbjct: 180 LALTATATKMVVDDIITCLGMKQCIQFRQSFNRPNIFYQVIHESQLSMNVMDDLKCFVS- 238
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK-------------LESNVS---- 278
F N SGIIY + E L ++L G++ YHA L +++S
Sbjct: 239 SFGNSSGIIYARQREVTEYLCQKLIASGIKAGVYHAGKKACEKQKTLKDWLSNDLSVICC 298
Query: 279 -IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIH L KS+ENFYQ S G
Sbjct: 299 TVAFGMGIDKPDVRFVIHFNLPKSLENFYQESGRAG 334
>gi|207342194|gb|EDZ70032.1| YMR190Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 952
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 103/282 (36%), Positives = 147/282 (52%), Gaps = 57/282 (20%)
Query: 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK--------LL 95
PT YPWSD V L F L FRPNQL A+N L KD ++MPT GK ++
Sbjct: 658 PT-YPWSDEVLYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVV 716
Query: 96 KKKK-----------ICLMTESSS--------------------------------LKLL 112
K K I LM + L L+
Sbjct: 717 KSGKTHGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLDLV 776
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
Y+SPE ++ S+ + ++Y G LARI +DE HC S+WGHDFRPDY+ L K +PD
Sbjct: 777 YISPEMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPD 836
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
+P++ LTATA+ +V +D+ L++++ V +K FNR NL+YEV K K+ + E+ D
Sbjct: 837 IPMIALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK---TKNTIFEICDA 893
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 274
+ RF+NQ+GIIY S K CE +++ G++ + YHA +E
Sbjct: 894 VKSRFKNQTGIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGME 935
>gi|261870786|gb|ACY02251.1| helicase [Heliconius cydno]
Length = 302
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 112/163 (68%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 1 MFPNIPILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 60
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 61 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 120
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP VRFVIHH +SKS+EN+YQ S G
Sbjct: 121 GYQAIVATVAFGMGIDKPXVRFVIHHTISKSIENYYQESGRAG 163
>gi|47224193|emb|CAG13113.1| unnamed protein product [Tetraodon nigroviridis]
Length = 827
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 126/375 (33%), Positives = 171/375 (45%), Gaps = 80/375 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YP 50
N+P+S + + +F L FR NQL AIN L +D ++MPT P
Sbjct: 12 NFPYSQEMMKIFHKRFGLHQFRFNQLEAINATLGGEDTFVLMPTGGGKSLCYQLPACVSP 71
Query: 51 WSDRVRSVLKS-------KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLM 103
V S LKS K D L+ L ++A I +L +K+ I
Sbjct: 72 GVTVVISPLKSLIVDQIQKLTTLDIPATSLSG---DLGDREAGRIYM--QLSRKEPI--- 123
Query: 104 TESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSS------------ 151
+KLLYV+PEK++ S ++ LQ +Y+ G LAR IDE HC S
Sbjct: 124 -----VKLLYVTPEKVSASNKLISALQNLYERGLLARFVIDEAHCVSQVCFQVYTQSAEC 178
Query: 152 --------------WGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIE 197
WGHDFRPDY+ L L+ FP VP++ LTATAT +V D+ L +
Sbjct: 179 VQTFTFNPPTLILQWGHDFRPDYKKLHELRKKFPQVPMMALTATATPRVQKDIHNQLNMR 238
Query: 198 DCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLRE 257
V FNR NL Y V P K ++ + + + SGIIY S +C+ + E
Sbjct: 239 QPQVFTMSFNRTNLKYAVL--PKKPKKVDEDCISWIKKHYPRDSGIIYCLSRNDCDTMAE 296
Query: 258 ELRNRGLRVSAYHAKLESN-------------------VSIAFGLGIDKPNVRFVIHHCL 298
L+ GL +YHA L +IAFG+GIDKP+VR+VIH L
Sbjct: 297 SLQRAGLLALSYHAGLRDGEREYVQTKWINQDGCQVICATIAFGMGIDKPDVRYVIHASL 356
Query: 299 SKSMENFYQVSIAFG 313
KS+E +YQ S G
Sbjct: 357 PKSVEGYYQESGRAG 371
>gi|426380348|ref|XP_004056835.1| PREDICTED: Bloom syndrome protein [Gorilla gorilla gorilla]
Length = 1377
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 120/331 (36%), Positives = 166/331 (50%), Gaps = 49/331 (14%)
Query: 20 NLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIA 79
N TD LA+ N+ + ++ +P + + + KF L +FR NQL AIN A
Sbjct: 623 NYTDKSAQNLASRNLKHERFQSL-----SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAA 677
Query: 80 LLKKDAIIIMPTGKLLKKKKICLMTES----------SSLKLLYVSP-EKLAK-----SK 123
LL +D I+MPTG K +C + S L+ L V +KL S
Sbjct: 678 LLGEDCFILMPTGG---GKSLCYQLPACVSPGVTIVISPLRSLIVDQVQKLTSLDICASN 734
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+ FP VP++ LTATA
Sbjct: 735 RLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATAN 794
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK--DCLDELADLMSRRFRNQS 241
+V D+ L+I V FNR NL Y V K + DCL + + + S
Sbjct: 795 PRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL----EWIRKHHPYDS 850
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN-------------------VSIAFG 282
GIIY S +EC+ + + L+ GL AYHA L + +IAFG
Sbjct: 851 GIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFG 910
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+GIDKP+VRFVIH L KS+E +YQ S G
Sbjct: 911 MGIDKPDVRFVIHASLPKSVEGYYQESGRAG 941
>gi|428184941|gb|EKX53795.1| hypothetical protein GUITHDRAFT_52059, partial [Guillardia theta
CCMP2712]
Length = 340
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 168/327 (51%), Gaps = 39/327 (11%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFN 64
LK F L+DFRP Q AI+ L KD I+ + T S V V+
Sbjct: 1 LKQAFGLSDFRPLQKEAIHNVLGGKDVIVCLATGGGKSLCYQLPALVLPGVTVVISPLIA 60
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC---LMTESSSLKLLYVSPEKLAK 121
L + L I DA+++ T + + I + S +KLLYV+PE L+
Sbjct: 61 LMQDQVFSLREKGI-----DAVLLNSTLSPTETRNILHRLWAIKHSPIKLLYVTPEALSG 115
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
S F L ++ + L+ AIDE HC SSWGHDFRP ++ LSILK + VP++ LTAT
Sbjct: 116 STLF-PYLNRLNEQNKLSLFAIDEAHCISSWGHDFRPAFRKLSILKRFYSKVPVIALTAT 174
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAA-QKDCLDELADLMSRRFRNQ 240
AT +V D+ L + + + A FNRPN+ YEVR K D ++A +S + + Q
Sbjct: 175 ATKRVRDDIASTLMLNNPEFLIATFNRPNITYEVRFKEQVPDSDVQGDIARFLS-KMKGQ 233
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
GIIY EC ++ L+ +G + AYHA L+++ ++AFG
Sbjct: 234 CGIIYCFKRTECSEIAMYLKGKGFSIEAYHAGLKNDERSEILQNWTEGKIHIVAATVAFG 293
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQVS 309
+GIDK +VRFVIH + KSME+FYQ S
Sbjct: 294 MGIDKADVRFVIHQTMPKSMESFYQES 320
>gi|407452782|ref|YP_006724507.1| Superfamily II DNA helicase [Riemerella anatipestifer RA-CH-1]
gi|403313766|gb|AFR36607.1| Superfamily II DNA helicase [Riemerella anatipestifer RA-CH-1]
Length = 734
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 116/322 (36%), Positives = 165/322 (51%), Gaps = 42/322 (13%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DRVRSVLKSKFNL 65
LK F + F+ Q A I+ L KD ++MPT S +++ S L
Sbjct: 12 LKKYFGFSTFKGQQEAIISTLLGGKDVFVLMPTGGGKSLCYQLPALISEGTAIVVSP--L 69
Query: 66 TDFRPNQLAAINIALLKKDAIIIMPTGKLLKK--KKICLMTESSSLKLLYVSPEKLAKSK 123
NQ+ A+N L ++ + + L K K++ S KLLYV+PE L K
Sbjct: 70 IALMKNQVDAVN-GLSSEEGVAHVLNSSLNKTQIKQVFSDINSGRTKLLYVAPESLIKED 128
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
K ++ +AIDE HC S WGHDFRP+Y+ L + +VP++ LTATAT
Sbjct: 129 YL-----DFLKQANISFVAIDEAHCISEWGHDFRPEYRNLKGIIDKIANVPVIALTATAT 183
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
KV D+QK L + D VV K FNRPNLFYEVR K +K E+ +++ + +SGI
Sbjct: 184 PKVQDDIQKTLGMSDAVVFKESFNRPNLFYEVRPKVDVEK----EIVKFINKN-KGKSGI 238
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGI 285
+Y S K+ E+ + L+ G+ YHA L+ +IAFG+GI
Sbjct: 239 VYCLSRKKVEEFAQTLQVNGINALPYHAGLDQKTRVANQDKFLMEECDVIVATIAFGMGI 298
Query: 286 DKPNVRFVIHHCLSKSMENFYQ 307
DKP+VRFVIH+ KS+E++YQ
Sbjct: 299 DKPDVRFVIHYDFPKSLESYYQ 320
>gi|298675436|ref|YP_003727186.1| ATP-dependent DNA helicase RecQ [Methanohalobium evestigatum
Z-7303]
gi|298288424|gb|ADI74390.1| ATP-dependent DNA helicase RecQ [Methanohalobium evestigatum
Z-7303]
Length = 596
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 116/328 (35%), Positives = 170/328 (51%), Gaps = 43/328 (13%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKF 63
+L F +FR +Q I L KKD ++MPT S + V V+
Sbjct: 4 ILHKYFGYEEFRSHQKDIITDILDKKDTFVVMPTGGGKSLCYQLPALLMEGVTIVVSPLI 63
Query: 64 NLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSK 123
+L + ++L + I+ A + T + +IC + + +LY++PE+L SK
Sbjct: 64 SLMKDQVDELRSNGIS-----AACLNSTLGYQESNQICNDLLYNRIDVLYITPERLTMSK 118
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
+ ++ + AIDE HC S WG DFRP+Y L++LK FPD+P++ LTATAT
Sbjct: 119 TL-----DFLESVNINLFAIDEAHCISEWGQDFRPEYLRLNMLKKKFPDIPLIALTATAT 173
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
+V DV +L++EDC + FNR NL+YEVR K A K + L + R +GI
Sbjct: 174 PRVQNDVISLLELEDCRRYISSFNRDNLYYEVRHKKDAYKQMVRYL-----KTHRKYNGI 228
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGI 285
IY S + EDL +L+ G RV YHA L + + +IAFG+GI
Sbjct: 229 IYCQSRRAVEDLYNKLKKEGFRVLPYHAGLPAKIREENQESFIRDDVQIIVATIAFGMGI 288
Query: 286 DKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+KPNVRFVIH+ L K++EN+YQ + G
Sbjct: 289 NKPNVRFVIHYDLPKNLENYYQQTGRGG 316
>gi|442772186|gb|AGC72851.1| ATP-dependent DNA helicase RecQ [uncultured bacterium A1Q1_fos_97]
Length = 607
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 121/334 (36%), Positives = 173/334 (51%), Gaps = 57/334 (17%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YPWSDRV 55
D+ + LK F FRP Q I KDA+++MPT P + V
Sbjct: 4 DKAKLALKRYFGYDQFRPLQADIIRAIFSGKDALVLMPTGGGKSVCFQIPAVTLPGTCIV 63
Query: 56 RSVLKS--KFNLTDFRPNQLAA--INIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
S L S K + R N +AA IN A+ ++ + + + + L L
Sbjct: 64 VSPLISLMKDQVEGLRANGIAAAFINSAIDSREQLRVEES------------FYAGELDL 111
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYVSPEKL S +F++ L K G + AIDE HC S+WGHDFRP+Y + +LK FP
Sbjct: 112 LYVSPEKLV-SGNFVSIL----KRGKINLFAIDEAHCISAWGHDFRPEYTQMGMLKQHFP 166
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP++ LTATA D+ L++E+ + A F+RPNL EVR P Q+ L ++ D
Sbjct: 167 RVPVVALTATADKLTRKDIVDQLKLEEPGIFIASFDRPNLSLEVR--PGQQR--LQQIED 222
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--------------- 276
+ R+ Q+GIIYT S K ED+ ++L+ +G + AYHA L +
Sbjct: 223 FI-RKHPKQAGIIYTLSRKATEDIADKLKQKGFKAEAYHAGLSPDRRSKIQDHFINDNLH 281
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GIDK NVR+VIH+ L K++E +YQ
Sbjct: 282 IICATVAFGMGIDKSNVRWVIHYNLPKNLEGYYQ 315
>gi|119622512|gb|EAX02107.1| Bloom syndrome, isoform CRA_a [Homo sapiens]
Length = 1392
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 120/331 (36%), Positives = 166/331 (50%), Gaps = 49/331 (14%)
Query: 20 NLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIA 79
N TD LA+ N+ + ++ +P + + + KF L +FR NQL AIN A
Sbjct: 638 NYTDKSAQNLASRNLKHERFQSL-----SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAA 692
Query: 80 LLKKDAIIIMPTGKLLKKKKICLMTES----------SSLKLLYVSP-EKLAK-----SK 123
LL +D I+MPTG K +C + S L+ L V +KL S
Sbjct: 693 LLGEDCFILMPTGG---GKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSLDICASN 749
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+ FP VP++ LTATA
Sbjct: 750 RLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATAN 809
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK--DCLDELADLMSRRFRNQS 241
+V D+ L+I V FNR NL Y V K + DCL + + + S
Sbjct: 810 PRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL----EWIRKHHPYDS 865
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN-------------------VSIAFG 282
GIIY S +EC+ + + L+ GL AYHA L + +IAFG
Sbjct: 866 GIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFG 925
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+GIDKP+VRFVIH L KS+E +YQ S G
Sbjct: 926 MGIDKPDVRFVIHASLPKSVEGYYQESGRAG 956
>gi|449471881|ref|XP_004175079.1| PREDICTED: LOW QUALITY PROTEIN: Bloom syndrome protein homolog
[Taeniopygia guttata]
Length = 1069
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 174/343 (50%), Gaps = 44/343 (12%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSDR 54
+P S + ++ KF L FR NQL AIN ALL +D I+MPT S
Sbjct: 377 FPHSAEMMNIFHRKFGLHCFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAG 436
Query: 55 VRSVLKSKFNLTDFRPNQLAAINIALL-----KKDAIIIMPTGKLLKKKKICLMTESSSL 109
V V+ +L + +L ++IA + DA +L KK + +
Sbjct: 437 VTIVISPLRSLIIDQVQKLKTLDIAATYLTGDRTDADASKIYMQLSKKDPV--------I 488
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169
KLLYV+PEK+ S M+ L+ +Y LAR IDE HC S WGHDFR DY+ L++L+
Sbjct: 489 KLLYVTPEKVCASNRLMSTLENLYDRKLLARFVIDEAHCVSQWGHDFRQDYKRLNMLRRK 548
Query: 170 FPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDEL 229
F VP++ LTATA +V D+ L++ V FNR NL Y+V K +K LD L
Sbjct: 549 FGSVPMMALTATANPRVQKDILNQLEMLKPQVFTMSFNRHNLKYDVLPK-KPKKVALDCL 607
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL-ESN------------ 276
+ + + + SGIIY S EC+ L+ GL AYHA L +SN
Sbjct: 608 -EWIKKYHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDSNRDLVQQKWVNQE 666
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VR+VIH L KS+E +YQ S G
Sbjct: 667 GCQVICATIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAG 709
>gi|404449892|ref|ZP_11014879.1| ATP-dependent DNA helicase RecQ [Indibacter alkaliphilus LW1]
gi|403764371|gb|EJZ25272.1| ATP-dependent DNA helicase RecQ [Indibacter alkaliphilus LW1]
Length = 726
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 114/326 (34%), Positives = 172/326 (52%), Gaps = 42/326 (12%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
V+ LK F + FR NQ ++ L + +IMPT S D V+
Sbjct: 5 VKENLKRIFGFSQFRGNQEPIVDNVLRGNNTFVIMPTGAGKSLCYQLPAVIQDGTAIVIS 64
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
L + +QL A I +A + T + K+ S KLLYV+PE L
Sbjct: 65 PLIALMKNQVDQLNAFGI-----NAHFLNSTLNKTETNKVKKEVLSGKTKLLYVAPESLT 119
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLT 179
K ++ + K L+ +AIDE HC S WGHDFRP+Y+ + +I+ + ++PI+ LT
Sbjct: 120 KEENVL-----FLKDAKLSFVAIDEAHCISEWGHDFRPEYRKIKTIIAQIGSNLPIVALT 174
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATAT KV D+Q+ LQ+E+ + K+ FNR NL+YEVR P + + ++ + + +
Sbjct: 175 ATATPKVQQDIQRNLQMEEADLFKSSFNRTNLYYEVR--PKVKNETKKQIIKYIKSQ-KG 231
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 281
+SGIIY S K+ E++ L+ G++ + YHA LE NV +IAF
Sbjct: 232 KSGIIYCLSRKKVEEIANLLKVNGIKAAPYHAGLEQNVRVKNQDDFLNEEVDVIVATIAF 291
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GIDKP+VR+VIH+ + KS+E +YQ
Sbjct: 292 GMGIDKPDVRYVIHYDVPKSLEGYYQ 317
>gi|384253210|gb|EIE26685.1| ATP-dependent DNA helicase, partial [Coccomyxa subellipsoidea
C-169]
Length = 513
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 163/323 (50%), Gaps = 44/323 (13%)
Query: 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFNLTDF 68
F FRPNQL AIN + D ++MPT S + V V+ +L
Sbjct: 9 FGNASFRPNQLEAINATIKGNDCFVLMPTGGGKSLCYQLPALLTNGVTVVISPLVSLIQD 68
Query: 69 RPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTK 128
+ L IA + + ++ L +++L+V+PEK+A+S M
Sbjct: 69 QVFHLQQAGIACGYLSGTQDYEDSRSIMQR---LQQTPPDIRVLFVTPEKVARSDYLMRT 125
Query: 129 LQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVML 188
L ++ L R+A+DE HC S WGHDFRPDY+ LS+ K +P VP+L LTATAT +V
Sbjct: 126 LDVLHSRRLLDRVAVDEAHCVSQWGHDFRPDYKGLSVFKRRYPMVPLLALTATATPRVQH 185
Query: 189 DVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF----RNQSGII 244
DV + L ++ CVV ++ FNR NL Y D + E+ D ++R F R Q GI+
Sbjct: 186 DVVQQLSLKHCVVFRSSFNRQNLRY------GKFDDAIKEMEDRIARNFCHHGRVQCGIV 239
Query: 245 YTTSIKECEDLREELR--NRGLRVSAYHAKLESN------------------VSIAFGLG 284
Y S +CE + EL+ +RG V YHA L +IAFG+G
Sbjct: 240 YCLSRNDCEKVAAELQEYSRGC-VFHYHAALTQQEREEVQANWTHDRMQIIVATIAFGMG 298
Query: 285 IDKPNVRFVIHHCLSKSMENFYQ 307
I+KP+VRFV+H + KS+E ++Q
Sbjct: 299 INKPDVRFVMHFSVPKSLEGYHQ 321
>gi|345095739|gb|AEN67411.1| helicase [Heliconius numata arcuella]
Length = 245
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 112/163 (68%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 2 MFPNIPILGLTATATAHVPADVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 61
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 62 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 121
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 122 GYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 164
>gi|342320631|gb|EGU12570.1| Hypothetical Protein RTG_01103 [Rhodotorula glutinis ATCC 204091]
Length = 979
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 125/373 (33%), Positives = 177/373 (47%), Gaps = 69/373 (18%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSDR 54
+ WSD + + + +RP Q AIN L ++ + ++PT S
Sbjct: 171 FSWSDEAERLAGDIWGVKKWRPGQEGAINATLDGREVVAVLPTGGGKSLIFQIPALLSKG 230
Query: 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC---LMTESSS--- 108
V+ +L + + L A +A A +I + + K+I L T S
Sbjct: 231 TTIVITPLISLMSDQVHNLHARGVA-----AEMIHASTSQAEIKEIMQRMLGTVGSKGKG 285
Query: 109 ------------LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDF 156
+KL+YV+PE++ KSK+F+ LQKMY AG LAR IDE HC S GHD+
Sbjct: 286 KKAAAAMEQAEEVKLVYVTPERIEKSKTFVNTLQKMYDAGLLARFVIDEAHCVSMQGHDY 345
Query: 157 RPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQI------------EDCVVIKA 204
R Y L LK +FP PIL +TATA V+ D+ K+L + + V+ A
Sbjct: 346 RTSYLSLQRLKVLFPSTPILAVTATAPQTVVADMLKILTLPANLSPGNAALPKTTVLFTA 405
Query: 205 PFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREEL----R 260
P RPNL Y + KP++ + LD + D + + +GIIYT S + E+L + + R
Sbjct: 406 PLYRPNLRYAIVPKPSSAQTALDAIVDWILENRKGSTGIIYTLSRADSENLTKGINGHER 465
Query: 261 NRG-LRVSAYHAKLES-------------------NVSIAFGLGIDKPNVRFVIHHCLSK 300
+G LR + YHA LE S +FGLGID PNVRFVIHH L K
Sbjct: 466 AKGKLRAAFYHAYLEDAEKQRVHEMWMSGKIQVVVATSASFGLGIDNPNVRFVIHHSLPK 525
Query: 301 SMENFYQVSIAFG 313
S+ N+ Q S G
Sbjct: 526 SLANYQQESGRAG 538
>gi|313205605|ref|YP_004044782.1| ATP-dependent DNA helicase recq [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|383484930|ref|YP_005393842.1| ATP-dependent DNA helicase recq [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|312444921|gb|ADQ81276.1| ATP-dependent DNA helicase RecQ [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|380459615|gb|AFD55299.1| ATP-dependent DNA helicase recq [Riemerella anatipestifer ATCC
11845 = DSM 15868]
Length = 734
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 116/322 (36%), Positives = 165/322 (51%), Gaps = 42/322 (13%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DRVRSVLKSKFNL 65
LK F + F+ Q A I+ L KD ++MPT S +++ S L
Sbjct: 12 LKKYFGFSTFKGQQEAIISTLLGGKDVFVLMPTGGGKSLCYQLPALISEGTAIVVSP--L 69
Query: 66 TDFRPNQLAAINIALLKKDAIIIMPTGKLLKK--KKICLMTESSSLKLLYVSPEKLAKSK 123
NQ+ A+N L ++ + + L K K++ S KLLYV+PE L K
Sbjct: 70 IALMKNQVDAVN-GLSSEEGVAHVLNSSLNKTQIKQVFNDINSGRTKLLYVAPESLIKED 128
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
K ++ +AIDE HC S WGHDFRP+Y+ L + +VP++ LTATAT
Sbjct: 129 YL-----DFLKQANISFVAIDEAHCISEWGHDFRPEYRNLKGIIDKIANVPVIALTATAT 183
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
KV D+QK L + D VV K FNRPNLFYEVR K +K E+ +++ + +SGI
Sbjct: 184 PKVQDDIQKTLGMSDAVVFKESFNRPNLFYEVRPKVDVEK----EIVKFINKN-KGKSGI 238
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGI 285
+Y S K+ E+ + L+ G+ YHA L+ +IAFG+GI
Sbjct: 239 VYCLSRKKVEEFAQTLQVNGINALPYHAGLDQKTRVANQDKFLMEECDVIVATIAFGMGI 298
Query: 286 DKPNVRFVIHHCLSKSMENFYQ 307
DKP+VRFVIH+ KS+E++YQ
Sbjct: 299 DKPDVRFVIHYDFPKSLESYYQ 320
>gi|345095737|gb|AEN67410.1| helicase [Heliconius numata arcuella]
Length = 245
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 112/163 (68%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 2 MFPNIPILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 61
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 62 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 121
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRF IHH +SKS+EN+YQ S G
Sbjct: 122 XYQAIVATVAFGMGIDKPDVRFXIHHTISKSIENYYQESGRAG 164
>gi|386320424|ref|YP_006016586.1| Superfamily II DNA helicase [Riemerella anatipestifer RA-GD]
gi|416111385|ref|ZP_11592598.1| ATP-dependent DNA helicase RecQ [Riemerella anatipestifer RA-YM]
gi|442315223|ref|YP_007356526.1| Superfamily II DNA helicase [Riemerella anatipestifer RA-CH-2]
gi|315022665|gb|EFT35690.1| ATP-dependent DNA helicase RecQ [Riemerella anatipestifer RA-YM]
gi|325334967|gb|ADZ11241.1| Superfamily II DNA helicase [Riemerella anatipestifer RA-GD]
gi|441484146|gb|AGC40832.1| Superfamily II DNA helicase [Riemerella anatipestifer RA-CH-2]
Length = 734
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 116/322 (36%), Positives = 165/322 (51%), Gaps = 42/322 (13%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DRVRSVLKSKFNL 65
LK F + F+ Q A I+ L KD ++MPT S +++ S L
Sbjct: 12 LKKYFGFSTFKGQQEAIISTLLGGKDIFVLMPTGGGKSLCYQLPALISEGTAIVVSP--L 69
Query: 66 TDFRPNQLAAINIALLKKDAIIIMPTGKLLKK--KKICLMTESSSLKLLYVSPEKLAKSK 123
NQ+ A+N L ++ + + L K K++ S KLLYV+PE L K
Sbjct: 70 IALMKNQVDAVN-GLSSEEGVAHVLNSSLNKTQIKQVFSDINSGRTKLLYVAPESLIKED 128
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
K ++ +AIDE HC S WGHDFRP+Y+ L + +VP++ LTATAT
Sbjct: 129 YL-----DFLKQANISFVAIDEAHCISEWGHDFRPEYRNLKGIIDKIANVPVIALTATAT 183
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
KV D+QK L + D VV K FNRPNLFYEVR K +K E+ +++ + +SGI
Sbjct: 184 PKVQDDIQKTLGMSDAVVFKESFNRPNLFYEVRPKVDVEK----EIVKFINKN-KGKSGI 238
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGI 285
+Y S K+ E+ + L+ G+ YHA L+ +IAFG+GI
Sbjct: 239 VYCLSRKKVEEFAQTLQVNGINALPYHAGLDQKTRVANQDKFLMEECDVIVATIAFGMGI 298
Query: 286 DKPNVRFVIHHCLSKSMENFYQ 307
DKP+VRFVIH+ KS+E++YQ
Sbjct: 299 DKPDVRFVIHYDFPKSLESYYQ 320
>gi|223997914|ref|XP_002288630.1| probable DNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220975738|gb|EED94066.1| probable DNA helicase [Thalassiosira pseudonana CCMP1335]
Length = 518
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 135/232 (58%), Gaps = 29/232 (12%)
Query: 107 SSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
+KLLY++PEKLA S L + G ++R +DE HC S WGHDFRPDY L L
Sbjct: 82 GGIKLLYITPEKLAHSNMIKGVLSNLANNGRISRFVVDEAHCLSDWGHDFRPDYNQLGCL 141
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
+ +P+VP++ LTATA KV+ D + L + + ++ FNRPNL YEVR K +
Sbjct: 142 RRDYPNVPLMALTATANKKVVSDAIRALGMRNEYSYRSSFNRPNLHYEVRRK---DNKTV 198
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRN-------RGLRVSAYHAKLESN--- 276
D +AD ++ R RN SG+IY S K+CE L ++L N R +RVS YHA+L+
Sbjct: 199 DTIADYIAER-RNDSGVIYCLSRKDCETLSDKLNNKLREKGFRDVRVSYYHAELDQRERH 257
Query: 277 ---------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VR+V+H+ + KS+ ++YQ S G
Sbjct: 258 QRHHAWSLGHISVLCATIAFGMGIDKPDVRYVMHYSMPKSITHYYQESGRAG 309
>gi|401887675|gb|EJT51654.1| hypothetical protein A1Q1_07066 [Trichosporon asahii var. asahii
CBS 2479]
Length = 929
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 114/338 (33%), Positives = 172/338 (50%), Gaps = 40/338 (11%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKF 63
Y WS V L+ F L +FR +Q AI+ + +D + + V V+
Sbjct: 183 QYAWSKEVNQKLRQVFMLPNFRTHQKEAIDETMAGRDDQLPAICSQGKTRGVTFVVSPLI 242
Query: 64 NLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS----LKLLYVSPEKL 119
+L + + L +K++ I TG L + K E K++YV+PE L
Sbjct: 243 SLINDQTRHL-------IKRNIPAIAYTGDLTQADKNIAHAELDRPVPYTKVVYVTPEML 295
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
+ L+ + + LAR IDE HC S WGHD R L+ +P +PI+ LT
Sbjct: 296 SMGSRIQGILRGLEQRKQLARFVIDEAHCVSGWGHDLRD-------LRKDYPGIPIMALT 348
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATA KV D+ ++L I C V+K FNRPNL YEVR K QK+ L+++ + + + +
Sbjct: 349 ATAPEKVQDDIIRVLGIRGCTVLKQSFNRPNLHYEVRPK---QKNVLEKIVNFIKTQTQG 405
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAF 281
SGI+Y +S ++CE + +ELR++ +R YHA + +IAF
Sbjct: 406 VSGIVYCSSREKCEIIAKELRDKDIRAWHYHAGMTKGDRRKIQEGWQEHKFEVIVATIAF 465
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
G+GIDKP+VR+VIHH L +S+E +YQ + G GK+S
Sbjct: 466 GMGIDKPDVRYVIHHSLPRSLEGYYQETGRAGRDGKNS 503
>gi|443476000|ref|ZP_21065927.1| ATP-dependent DNA helicase RecQ [Pseudanabaena biceps PCC 7429]
gi|443019101|gb|ELS33248.1| ATP-dependent DNA helicase RecQ [Pseudanabaena biceps PCC 7429]
Length = 769
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 175/329 (53%), Gaps = 27/329 (8%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSD--RVRSVLKSKFNL 65
SD ++ LK F FR Q I+ L +D + IMPT S ++ ++LK+ +
Sbjct: 31 SDSLQQALKQYFGYESFRAGQREIIDAHLAGRDTLAIMPTGGGKSICFQLPALLKTGVTI 90
Query: 66 TDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTES---SSLKLLYVSPEKLAKS 122
L + LK++ I L ++ +++ ++KL+YV+PE+L +
Sbjct: 91 VVSPLIALMQDQVTALKENGIGATFLNSTLSGRETNQRSQAILNGAIKLIYVAPERLF-A 149
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+ F+ L + +A AIDE HC S WGHDFRP+Y+ LS L+ +PDVP++GLTATA
Sbjct: 150 EQFIEFLNIVKNKIGIAGFAIDEAHCVSEWGHDFRPEYRQLSRLRQFYPDVPVIGLTATA 209
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSG 242
T +V D+ + L ++ V A FNR NL+YEV K ++ ++ L + +R + SG
Sbjct: 210 TERVREDIIQQLDLQQPYVHVASFNRDNLYYEVVPKQGTEQSYVNLLQQI--KRMQG-SG 266
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKL-----ESN-------------VSIAFGLG 284
I+Y S K ++ E LR G+ YHA L E N +IAFG+G
Sbjct: 267 IVYCLSRKRVNEIAERLREDGIAAIPYHAGLSAKEREENQTRWIRDDVQVMVATIAFGMG 326
Query: 285 IDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
I+KP+VRFVIH+ L K++E +YQ S G
Sbjct: 327 INKPDVRFVIHYDLPKNIEGYYQESGRAG 355
>gi|308452165|ref|XP_003088938.1| hypothetical protein CRE_17749 [Caenorhabditis remanei]
gi|308244257|gb|EFO88209.1| hypothetical protein CRE_17749 [Caenorhabditis remanei]
Length = 1020
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 112/327 (34%), Positives = 164/327 (50%), Gaps = 74/327 (22%)
Query: 52 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG------------------- 92
++ + S LKSKF FR Q I L+ D ++MPTG
Sbjct: 266 NEELYSTLKSKFGFNQFRHRQKQCILSTLMGNDTFVLMPTGAGKSLCYQLPAVILPGVTV 325
Query: 93 ------KLLKKKKI--------C------------------LMTESSSLKLLYVSPEKLA 120
L++ +K+ C L +E+ ++KLLYV+PEK++
Sbjct: 326 VVSPLRSLIEDQKMKMKELGIGCEALTADLSAGAQEDIYSDLTSENPTIKLLYVTPEKIS 385
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF--PDVPILGL 178
S ++ +++ G LAR IDE HC S WGHDFRPDY LS L+ F P VPI+ L
Sbjct: 386 ASGRLISVFYTLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSTLREKFHNPPVPIIAL 445
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFR 238
TATAT K++ D + L++++ + + F R NL Y+ + P A K ++ + + M + +
Sbjct: 446 TATATPKIVTDARYNLKMQNSKLFISSFVRDNLKYD--LIPKAAKSLIN-VVEKMKQLYP 502
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGI+Y S KECE ++ L GL YHA L + +IA
Sbjct: 503 GKSGIVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDGLRVSVQKGWLANKFDVICATIA 562
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GIDKP+VRFVIH+ L KS+E +YQ
Sbjct: 563 FGMGIDKPDVRFVIHYSLPKSIEGYYQ 589
>gi|345095785|gb|AEN67434.1| helicase [Heliconius numata aurora]
Length = 245
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/163 (52%), Positives = 112/163 (68%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++PILGLTATAT V+ D QKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCJ
Sbjct: 2 MFPNIPILGLTATATAHVLSDXQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCJSI 61
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 62 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 121
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 122 GYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 164
>gi|25145561|ref|NP_502390.2| Protein HIM-6 [Caenorhabditis elegans]
gi|28201770|sp|O18017.2|BLM_CAEEL RecName: Full=Bloom syndrome protein homolog; AltName: Full=High
incidence of males protein 6; AltName: Full=RecQ
helicase homolog
gi|20853750|gb|AAM26298.1| RecQ helicase [Caenorhabditis elegans]
gi|22859109|emb|CAB05609.2| Protein HIM-6 [Caenorhabditis elegans]
Length = 988
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/327 (35%), Positives = 170/327 (51%), Gaps = 42/327 (12%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YPWSDRVRSVLK 60
LKSKF FR Q I L+ D ++MPT P V S L+
Sbjct: 238 TLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILPGVTVVVSPLR 297
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
S L + + ++ + I A + P + + + L + + S+KLLYV+PEK++
Sbjct: 298 S---LIEDQKMKMKELGIGCEALTADLGAPAQEKIYAE---LGSGNPSIKLLYVTPEKIS 351
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF--PDVPILGL 178
S + +++ G LAR IDE HC S WGHDFRPDY LS L+ + P VPI+ L
Sbjct: 352 ASGRLNSVFFDLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIAL 411
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFR 238
TATAT K++ D + L++++ + + F R NL Y+ + P A + ++ + + M + +
Sbjct: 412 TATATPKIVTDARDHLKMQNSKLFISSFVRDNLKYD--LIPKAARSLIN-VVEKMKQLYP 468
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGI+Y S KECE ++ L GL YHA L N+ +IA
Sbjct: 469 GKSGIVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDNLRVSVQRSWIANKFDVICATIA 528
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GIDKP+VRFVIH+ L KS+E +YQ
Sbjct: 529 FGMGIDKPDVRFVIHYSLPKSIEGYYQ 555
>gi|427712781|ref|YP_007061405.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 6312]
gi|427376910|gb|AFY60862.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 6312]
Length = 732
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 116/324 (35%), Positives = 166/324 (51%), Gaps = 27/324 (8%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSD--RVRSVLKSKFNLTDFRP 70
LK F FRP Q IN +L ++D + I+PT S ++ ++LK L
Sbjct: 5 EALKHYFGYEAFRPGQAEIINASLNQQDVLAILPTGGGKSICFQLPALLKPGVTLVVSPL 64
Query: 71 NQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTES---SSLKLLYVSPEKLAKSKSFMT 127
L + L+K+ I L + S +KLLYV+PE+L S SF
Sbjct: 65 IALMLDQVLALQKNGIPATFLNSTLAAAEARARIHSILNGEVKLLYVAPERLV-SDSFTA 123
Query: 128 KLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVM 187
L +++ +A +DE HC S WGHDFRPDY+ LS L+ +FP +P++ LTATAT V
Sbjct: 124 LLANIHQTVGIASFVVDEAHCVSEWGHDFRPDYRQLSRLRELFPSIPMMALTATATHCVR 183
Query: 188 LDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTT 247
D+ + L ++ + A FNRPNL+YEV I+ + K L EL + + SGIIY
Sbjct: 184 ADITEQLSLKQPFIHVASFNRPNLYYEV-IEKSRGKVSLSELTRYIKK--TEGSGIIYCM 240
Query: 248 SIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPN 289
S K E L EL G+ YHA L ++ ++AFG+GI+KP+
Sbjct: 241 SRKNVEKLASELNENGISALPYHAGLNNDTRTDHQTRFIRDDVQIMVATVAFGMGINKPD 300
Query: 290 VRFVIHHCLSKSMENFYQVSIAFG 313
VRFVIH+ L +++E +YQ S G
Sbjct: 301 VRFVIHYDLPQTIEGYYQESGRGG 324
>gi|58266374|ref|XP_570343.1| ATP-dependent DNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|57226576|gb|AAW43036.1| ATP-dependent DNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 876
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/367 (31%), Positives = 180/367 (49%), Gaps = 84/367 (22%)
Query: 18 KFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAIN 77
+F L+ N + ++ + I + +P+S + + L++ FNL FR Q IN
Sbjct: 95 EFQLSSISRNPCPSDSLFSTAANTIDYQSSCFPFSSAIAATLRNTFNLNKFRLCQEGVIN 154
Query: 78 IALLKKDAIIIMPTG--------------------------------KLLKKKKI-CLMT 104
A+ +D + +MPTG + LK+ I C+M
Sbjct: 155 AAVDDRDIVCVMPTGGGKSLTYQLPAVMGRGLTVVVSPLLALIWDQVRALKEIGIECVML 214
Query: 105 ESSS----------------------LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIA 142
S+ ++L YV+PEK++KSK FM+ L+KM ++G L R
Sbjct: 215 TGSTSTQEQNEIYKRLRDGPSHGEKEIRLCYVTPEKVSKSKRFMSVLEKMNQSGRLRRFV 274
Query: 143 IDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQI----ED 198
IDE HCCS GHDFRPDY+ LS+LKT+FP VPI +TAT ++K + D+ K+L++ +
Sbjct: 275 IDEAHCCSQLGHDFRPDYKKLSMLKTLFPRVPIQAVTATLSSKTLPDLLKILRLGPITDG 334
Query: 199 CVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREE 258
+ +P RPNL Y+V K + K + E+ + + +SGI+Y S K+ E + EE
Sbjct: 335 RIFFSSPLFRPNLHYKVLPKASNAKTAIAEMGRWIQDKHPGESGIVYCLSKKDAETVAEE 394
Query: 259 LRNRGLRVSAYHAKLESN------------------VSIAFGLGIDKPNVRFVIHHCLSK 300
L +G YHA ++ +IAFGLGIDK +VR+ +SK
Sbjct: 395 L--KGWSNGVYHAGIDDTEKETIHVKWREGKINCICATIAFGLGIDKGDVRY-----MSK 447
Query: 301 SMENFYQ 307
S+E +YQ
Sbjct: 448 SLEGYYQ 454
>gi|311746386|ref|ZP_07720171.1| ATP-dependent DNA helicase RecQ [Algoriphagus sp. PR1]
gi|126575272|gb|EAZ79604.1| ATP-dependent DNA helicase RecQ [Algoriphagus sp. PR1]
Length = 725
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/329 (34%), Positives = 176/329 (53%), Gaps = 42/329 (12%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSDRVRS 57
++V+ LK F + FR NQ ++ L ++ +IMPT S+
Sbjct: 2 EEKVKEDLKKIFGFSQFRGNQEPIVDNLLGHRNTFVIMPTGAGKSLCYQLPAVVSNGTAI 61
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPE 117
V+ L + +QL AI I +A + T + K+ S KLLYV+PE
Sbjct: 62 VISPLIALMKNQVDQLKAIGI-----NAHFLNSTLNKSESTKVKNEVLSKKTKLLYVAPE 116
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPIL 176
L K ++ K+ L+ +AIDE HC S WGHDFRP+Y+ + +I+ + P++PI+
Sbjct: 117 SLTKEENIA-----FLKSAELSFVAIDEAHCISEWGHDFRPEYRKIKTIVAQIAPNLPII 171
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATAT KV D+Q+ LQ+E+ + K+ FNR NLFYEVR P + + +L + +
Sbjct: 172 ALTATATPKVQQDIQRNLQMEEADLFKSSFNRTNLFYEVR--PKMKNESKKQLIKFI-KN 228
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------S 278
+ +SGIIY S K+ E++ + L+ + + YHA L+S + +
Sbjct: 229 HKGKSGIIYCLSRKKVEEIAQLLQVNQINAAPYHAGLDSAIRIKNQDDFLNEELDVIVAT 288
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
IAFG+GIDKP+VR+VIH+ + KS+E +YQ
Sbjct: 289 IAFGMGIDKPDVRYVIHYDVPKSLEGYYQ 317
>gi|325187369|emb|CCA21907.1| bloom syndrome protein putative [Albugo laibachii Nc14]
Length = 590
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/342 (33%), Positives = 165/342 (48%), Gaps = 46/342 (13%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLT 66
DR +++ F FR Q + I + +KD ++MPT S ++ +VL +
Sbjct: 157 DRANALI---FGNASFRTIQRSVIEATMAQKDCFVLMPTGGGKSLCYQLPAVLSQGVTIV 213
Query: 67 DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE--------SSSLKLLYVSPEK 118
L + L ++ +PT L + I L S+KLLYV+ E+
Sbjct: 214 VSPLLSLIQDQVTQLIQNPSAGIPTAYLSSQTGIALKKTIYAELKRPRPSIKLLYVTAER 273
Query: 119 LAK-SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
+ + FM+ L +++ LAR IDE HC S WGHDFRPDY L +LKT FP +PIL
Sbjct: 274 IGSVAADFMSLLHDLHQKKMLARFVIDEAHCISQWGHDFRPDYSKLGVLKTAFPSIPILA 333
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATA V+ V K L I D +V++ FNR NL +EV KP+ + L L++ RF
Sbjct: 334 LTATAAENVVRHVLKSLHINDALVLRTGFNRSNLLFEVHEKPSGDIEARKHLLALLTCRF 393
Query: 238 --------------RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------- 276
SGI+Y + ECED+ L + G+ YH
Sbjct: 394 GYRKATWTEDSFSSEGPSGIVYCMTRDECEDVANFLFDHGISADFYHGGQSKTDRQLVQQ 453
Query: 277 -----------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IA+G+GI+K +VRFVIH+ L+KS+E +YQ
Sbjct: 454 AWQRGHVRIVCATIAYGMGINKADVRFVIHYSLAKSIEGYYQ 495
>gi|302689945|ref|XP_003034652.1| hypothetical protein SCHCODRAFT_15081 [Schizophyllum commune H4-8]
gi|300108347|gb|EFI99749.1| hypothetical protein SCHCODRAFT_15081 [Schizophyllum commune H4-8]
Length = 702
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/344 (34%), Positives = 168/344 (48%), Gaps = 45/344 (13%)
Query: 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--------DYPWSDRVRSVLKS 61
+V K F FR Q A+ A+ +D ++ PT P V
Sbjct: 63 KVEKSAKQIFGYPSFRGKQKEAVEAAVQGQDVFVLAPTGMGKSLCFQVPAVAAAHGVTLV 122
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS----LKLLYVSPE 117
L NQ+ A++ K + T + LK K ++ + S +LLYVSPE
Sbjct: 123 VSPLLALMKNQVEALDA----KGVHVASLTSETLKSVKNAVINDLRSARPKTRLLYVSPE 178
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
+ + F L+ ++ G L R+ +DE HC S WGHDFR +Y+ L + + FP+VPI+
Sbjct: 179 RFC-TADFQAILEGLHDNGMLNRLVVDEAHCISQWGHDFRAEYRKLGMFRDNFPEVPIMA 237
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKA--PFNRPNLFYEVRIKPAAQ---KDCLDELADL 232
LTATAT V D+ + L + D + KA PFNR NL+YEVR +A KD D ++ L
Sbjct: 238 LTATATPAVQSDILRSLNMTDDRLFKALHPFNRANLYYEVRYSCSATGQMKDIYDLISRL 297
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYH------------------AKLE 274
RR R SGI+Y C++L E LR RG+ YH ++E
Sbjct: 298 HERRGRPSSGIVYCRRRDTCDELAEFLRKRGMNARPYHRGIKGPTLDKTLAEWTAGGQVE 357
Query: 275 SNV-----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++ +IAFGLGIDKP+VR++IH+ L S E +YQ + G
Sbjct: 358 GDLHVVVATIAFGLGIDKPDVRYIIHYDLPTSFEGYYQETGRAG 401
>gi|410029263|ref|ZP_11279099.1| ATP-dependent DNA helicase RecQ [Marinilabilia sp. AK2]
Length = 726
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 113/326 (34%), Positives = 175/326 (53%), Gaps = 42/326 (12%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
V+ LK F + FR NQ ++ L +K+ +IMPT S + V+
Sbjct: 5 VKEKLKKIFGFSQFRGNQEPIVDNILGQKNTFVIMPTGAGKSLCYQLPAVIQEGTAIVIS 64
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
L + +QL A I +A + T + K+ S KLLYV+PE L
Sbjct: 65 PLIALMKNQVDQLNAFGI-----NAHFLNSTLNKSETNKVKKEVLSGKTKLLYVAPESLT 119
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLT 179
K ++ + K L+ +AIDE HC S WGHDFRP+Y+ + SI+ + ++PI+ LT
Sbjct: 120 KEENIL-----FLKDAKLSFVAIDEAHCISEWGHDFRPEYRKIKSIIAQLGKELPIIALT 174
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATAT KV D+Q+ LQ+E+ + K+ FNR NL+YE+R P + + ++ + + +
Sbjct: 175 ATATPKVQQDIQRNLQMEEADLFKSSFNRTNLYYEIR--PKLKNETKKQIIKYIKSQ-KG 231
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 281
+SGIIY S K+ E++ E L+ G++ + YHA L+ +V +IAF
Sbjct: 232 KSGIIYCLSRKKVEEIAELLKVNGIKAAPYHAGLDQSVRIKNQDDFLNEEVDVIVATIAF 291
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GIDKP+VR+VIH+ + KS+E +YQ
Sbjct: 292 GMGIDKPDVRYVIHYDVPKSLEGYYQ 317
>gi|321263530|ref|XP_003196483.1| ATP-dependent DNA helicase [Cryptococcus gattii WM276]
gi|317462959|gb|ADV24696.1| ATP-dependent DNA helicase, putative [Cryptococcus gattii WM276]
Length = 862
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 120/374 (32%), Positives = 186/374 (49%), Gaps = 88/374 (23%)
Query: 12 RSVLKSKFNLTDFRPNQL-AAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRP 70
R VL+S+ + RP + +++ + + I + +P+S + + L++ FNL FR
Sbjct: 91 RRVLESQLS---SRPRHAHTSSSLSSIAANTIDYQSSHFPFSSAIAATLRNTFNLNKFRL 147
Query: 71 NQLAAINIALLKKDAIIIMPTG--------------------------------KLLKKK 98
Q IN A+ +D + +MPTG + LK+
Sbjct: 148 CQEGVINAAVDDRDIVCVMPTGGGKSLTYQLPAVMGRGLTVVVSPLLALIWDQVRALKEI 207
Query: 99 KI-CLMTESSS----------------------LKLLYVSPEKLAKSKSFMTKLQKMYKA 135
I C+M S+ ++L YV+PEK++KSK F++ L+KM ++
Sbjct: 208 GIECVMLTGSTSTQEQNEIYARLRDGPSHGEKEIRLCYVTPEKISKSKRFISALEKMNQS 267
Query: 136 GCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQ 195
G L R IDE HCCS GHDFRPDY+ LS+LKT+FP VPI +TAT ++K + D+ K+L+
Sbjct: 268 GQLRRFVIDEAHCCSQLGHDFRPDYKKLSMLKTLFPRVPIQAVTATLSSKTLPDLLKILR 327
Query: 196 I----EDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKE 251
+ + + +P RPNL Y+V K + K + E+ + + +SGI+Y S K+
Sbjct: 328 LGPITDGRIFFSSPLFRPNLHYKVLPKASNAKTAIAEMGKWIQDKHPGESGIVYCLSKKD 387
Query: 252 CEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDKPNVRFV 293
E + EELR V YHA ++ +IAFGLGIDK +VR+
Sbjct: 388 AETVAEELREWSNGV--YHAGIDDAEKEIIHVRWREGKVNCICATIAFGLGIDKGDVRY- 444
Query: 294 IHHCLSKSMENFYQ 307
+SKS+E +YQ
Sbjct: 445 ----MSKSLEGYYQ 454
>gi|395502424|ref|XP_003755581.1| PREDICTED: Bloom syndrome protein [Sarcophilus harrisii]
Length = 1445
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 122/360 (33%), Positives = 171/360 (47%), Gaps = 76/360 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD----------------------- 40
++P S + + KF L FR NQL AIN LL +D
Sbjct: 682 DFPHSKEMMKIFHKKFGLHHFRTNQLEAINAVLLGEDCFVLMPTGGGKSLCYQLPACVSP 741
Query: 41 --AIIIMPTDYPWSDRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
I+I P D+V+ + + + + D ++ A I + L KKD II
Sbjct: 742 GVTIVISPLRSLIIDQVQKLTSLDIPATYLTGDKTDSEAANIYLQLSKKDPII------- 794
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGH
Sbjct: 795 ---------------KLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGH 839
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFR DY+ L++L+ FP V ++ LTATA +V D+ L+I + V FNR NL Y
Sbjct: 840 DFRQDYKRLNMLRHKFPSVSMMALTATANPRVQKDILTQLKILNPQVFSMSFNRHNLKYS 899
Query: 215 VRIKPAAQK--DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
V K + DCL + + + + SGIIY S +EC+ + + L+ GL AYHA
Sbjct: 900 VLPKKPKKVAFDCL----EWIRKHHPHDSGIIYCLSRRECDTMADTLQKDGLAALAYHAG 955
Query: 273 LESN-------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L + +IAFG+GIDKP+VR+VIH L KS+E +YQ S G
Sbjct: 956 LSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRYVIHSSLPKSVEGYYQESGRAG 1015
>gi|348679514|gb|EGZ19330.1| hypothetical protein PHYSODRAFT_491373 [Phytophthora sojae]
Length = 400
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 133/220 (60%), Gaps = 20/220 (9%)
Query: 108 SLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
SLKLLY++PEK+ KS LQ +Y+ LAR IDE HC S WGHDFRP+Y L +LK
Sbjct: 83 SLKLLYLTPEKIVKSAEMADLLQTLYRNKMLARFVIDEAHCVSQWGHDFRPEYSQLGMLK 142
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKP-AAQKDCL 226
FP+VP++ LTATA KV+ VQ+ L+I + V FNR NL +EVR KP + +
Sbjct: 143 KTFPNVPLMALTATAPPKVIQGVQRSLKISNGPVFSMSFNRQNLTFEVRDKPLGSDVKAM 202
Query: 227 DELADLMSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--------- 276
+ L +L+S+ + R+ GI+Y + ++ ED+ L +RGL YHA +
Sbjct: 203 EALYELISKTYPRDAVGIVYCMTKQDSEDVANYLFDRGLSADFYHAGQSATDRHMVQEAW 262
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IA+G+GI+KP+VR+VIH ++KS+E +YQ
Sbjct: 263 QNGQLSIVCATIAYGMGINKPDVRYVIHFSVAKSIEGYYQ 302
>gi|261870790|gb|ACY02253.1| helicase [Heliconius pachinus]
Length = 302
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 112/163 (68%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++ ILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 1 MFPNISILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 60
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 61 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 120
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 121 GYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 163
>gi|410670594|ref|YP_006922965.1| ATP-dependent DNA helicase RecQ [Methanolobus psychrophilus R15]
gi|409169722|gb|AFV23597.1| ATP-dependent DNA helicase RecQ [Methanolobus psychrophilus R15]
Length = 705
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/328 (35%), Positives = 164/328 (50%), Gaps = 43/328 (13%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKF 63
L+ F ++FRP Q I L KD ++MPT S D + V+
Sbjct: 4 TLQKYFGYSEFRPLQKDIIQDVLDGKDTFVLMPTGGGKSLCYQLPALLMDGLTVVISPLI 63
Query: 64 NLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSK 123
+L + + L A + +A + T + +KIC ++ +K+LY++PE+LA S
Sbjct: 64 SLMKDQVDSLRANGV-----NAAFLNSTQNYTESRKICDDIATNDIKILYMAPERLAMSG 118
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
+ M ++ AIDE HC S WGHDFRP+Y+ LS+LK FP VPI+ LTATAT
Sbjct: 119 TL-----SMITKAKVSLFAIDESHCISEWGHDFRPEYRKLSMLKKKFPKVPIIALTATAT 173
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
KV D L + + A FNR NL YE+R K K+ D++ + RR + + GI
Sbjct: 174 PKVREDTLNQLGLTNPKTYIASFNRSNLLYEIRPK----KETYDQILQYL-RRNKGKGGI 228
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGI 285
IY S K + + +LR G YHA L +IAFG+GI
Sbjct: 229 IYCQSRKNVDTVTAKLRKAGFNALPYHAGLSDTQRGRNQEAFIKDKADIIVATIAFGMGI 288
Query: 286 DKPNVRFVIHHCLSKSMENFYQVSIAFG 313
DKPNVRFVIH+ L K++E +YQ + G
Sbjct: 289 DKPNVRFVIHYDLPKNLEGYYQETGRGG 316
>gi|261870792|gb|ACY02254.1| helicase [Heliconius pachinus]
Length = 302
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 112/163 (68%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++ ILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 1 MFPNISILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 60
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 61 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 120
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 121 GYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 163
>gi|261870794|gb|ACY02255.1| helicase [Heliconius pachinus]
gi|261870798|gb|ACY02257.1| helicase [Heliconius pachinus]
Length = 302
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 112/163 (68%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++ ILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 1 MFPNISILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 60
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 61 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 120
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 121 GYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 163
>gi|392399436|ref|YP_006436037.1| ATP-dependent DNA helicase RecQ [Flexibacter litoralis DSM 6794]
gi|390530514|gb|AFM06244.1| ATP-dependent DNA helicase RecQ [Flexibacter litoralis DSM 6794]
Length = 729
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/325 (37%), Positives = 168/325 (51%), Gaps = 43/325 (13%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS----VLK 60
++ LK F FR NQ I L K+ +IMPT Y VR V+
Sbjct: 8 LKKTLKEVFGYNQFRGNQETIIQNLLDGKNTFVIMPTGAGKSLCYQLPAIVREGTAIVIS 67
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
L + +QL A+ I +A + T + K+ + + KLLYV+PE L
Sbjct: 68 PLIALMKNQVDQLNAVGI-----NASFLNSTLSKSESNKVKKSVLAGNTKLLYVAPESLT 122
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
K ++ L + KA L+ IAIDE HC S WGHDFRP+Y+ + + D+PI+ LTA
Sbjct: 123 KPEN----LDFLAKAN-LSFIAIDEAHCISEWGHDFRPEYRRIRFIVDSLGDLPIIALTA 177
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TAT KV D+QK L +ED V K FNR NL+YEVR K +K + L + + Q
Sbjct: 178 TATPKVQQDIQKNLHMEDANVFKTSFNRQNLYYEVRPKTNVKKQLIKYL-----KGKKGQ 232
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282
SGIIY S K+ E++ E L+ ++ YHA L+S++ +IAFG
Sbjct: 233 SGIIYCLSRKKVEEIHEFLKVNDIKSRPYHAGLDSSIRMQNQDAFLNEEVDIIVATIAFG 292
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GIDKP+VR VIH+ KS+E +YQ
Sbjct: 293 MGIDKPDVRCVIHYDAPKSLEGYYQ 317
>gi|440296127|gb|ELP88968.1| ATP-dependent DNA helicase recQ, putative [Entamoeba invadens IP1]
Length = 517
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/330 (33%), Positives = 178/330 (53%), Gaps = 36/330 (10%)
Query: 7 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN 64
+ ++ VL + F++ DFRP Q I L D ++IMPT S +++SVL +K
Sbjct: 19 YDKKLDDVLHNTFHIADFRPQQRDIILSTLNNTDTVVIMPTGGGKSLCFQLQSVLTNKIT 78
Query: 65 -----LTDFRPNQLAAIN----IALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVS 115
L N + A+N ++ + ++ ++L L + S L LLYV+
Sbjct: 79 IVISPLISLMQNHVDALNARGVVSYIFNSSLTKSEASRVL----AILNSTSPELYLLYVT 134
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE++ K++ F + K+ G + AIDE HC S WGHDFRP Y LS LK FP +P+
Sbjct: 135 PEQI-KTQRFQNIMNKLNDNGKIGLFAIDEAHCISQWGHDFRPSYLELSYLKQTFPQIPV 193
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATAT KV D+ K L ++D + + F+RPN+++ V K + + +EL +++
Sbjct: 194 IALTATATEKVKDDIIKALGLKDPNIFTSTFDRPNIYFRVLYKDLYE-NPQEELLKYLTQ 252
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
+ + GI+Y ++ ECE L + L+++G RV YHA + ++
Sbjct: 253 H-QQEGGIVYCSTRNECELLEKYLKSKGFRVGKYHAGMSASDRESVQKMWERKETGIVIA 311
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GID+ +VRFV+H + K++E F Q
Sbjct: 312 TVAFGMGIDRSDVRFVVHWNIPKNIEGFIQ 341
>gi|193212332|ref|YP_001998285.1| ATP-dependent DNA helicase RecQ [Chlorobaculum parvum NCIB 8327]
gi|193085809|gb|ACF11085.1| ATP-dependent DNA helicase RecQ [Chlorobaculum parvum NCIB 8327]
Length = 609
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 119/331 (35%), Positives = 167/331 (50%), Gaps = 41/331 (12%)
Query: 2 LPNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVL 59
L P +D + + F FRPNQ + + +D +MPT S ++ +VL
Sbjct: 8 LQTSPLNDALHRI----FGFHSFRPNQEEIVRALMGGRDVFAVMPTGGGKSLCYQLPAVL 63
Query: 60 KSKFNLT-----DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYV 114
L +Q+ A + +K A + + + + +S L LLYV
Sbjct: 64 MPGTALVVSPLISLMKDQVDAARLNGIK--AAFLNSSLDFTDQSAVLRSLQSGDLDLLYV 121
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PE+ A + + +++ C++ IDE HC S WGHDFRPDY LS L + PDVP
Sbjct: 122 APERFA-----LDQFRELLAGCCISIAVIDEAHCISEWGHDFRPDYLSLSSLVELLPDVP 176
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
+ TATAT KV D+ L + D V++A F+RPNL YEVR K A + +L L++
Sbjct: 177 VAAFTATATQKVQRDIVSKLGLRDPFVLRASFDRPNLTYEVRFKEAGES----QLVSLLN 232
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL---------------ESNV-- 277
F QSGIIY TS K D L+ RG+R YHA L E +V
Sbjct: 233 -EFSGQSGIIYRTSRKSVNDTAAMLQKRGIRALPYHAGLADRERHDNQEAFIRDEVDVIV 291
Query: 278 -SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GIDK NVRFVIH L KS+E++YQ
Sbjct: 292 ATVAFGMGIDKSNVRFVIHADLPKSIESYYQ 322
>gi|307132960|ref|YP_003884976.1| ATP-dependent DNA helicase [Dickeya dadantii 3937]
gi|306530489|gb|ADN00420.1| ATP-dependent DNA helicase [Dickeya dadantii 3937]
Length = 614
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/325 (34%), Positives = 170/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q A IN A+ +D ++IMPT S + + V+
Sbjct: 20 QVLRETFGYQQFRPGQQAIINAAVSGRDCLVIMPTGGGKSLCYQIPALVLEGLTLVVSPL 79
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A +A A + T +++ + LKLLY++PE+L +
Sbjct: 80 ISLMKDQVDQLQAYGVA-----AACLNSTQTREQQQAVFSACRRGELKLLYIAPERLT-T 133
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
F+ +L IAIDE HC S WGHDFRP+Y+ L +K P +PI+ LTATA
Sbjct: 134 DGFLEQLTHWNTT----LIAIDEAHCISQWGHDFRPEYRALGQIKQQLPALPIVALTATA 189
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L + D ++ + F+RPN+ Y + + KP LD+L L + R +
Sbjct: 190 DETTRQDIARLLDLRDPLINISSFDRPNIRYTLVEKFKP------LDQLW-LFVQGQRGK 242
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGI+Y S + EDL L+NRGL V AYHA L+++ ++AFG
Sbjct: 243 SGIVYCNSRAKVEDLCARLQNRGLSVGAYHAGLDNDRRSQVQEAFLRDDLQVVVATVAFG 302
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 303 MGINKPNVRFVVHFDIPRNIESYYQ 327
>gi|443244229|ref|YP_007377454.1| ATP-dependent DNA helicase [Nonlabens dokdonensis DSW-6]
gi|442801628|gb|AGC77433.1| ATP-dependent DNA helicase [Nonlabens dokdonensis DSW-6]
Length = 730
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 122/325 (37%), Positives = 169/325 (52%), Gaps = 46/325 (14%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DRVRSVLKSKFNL 65
LK F FR Q I L K+D +IMPT S +++ S L
Sbjct: 12 LKKYFGFEQFRGLQKQVITSLLNKEDCFVIMPTGGGKSLCYQLPALMQEGTAIVVSP--L 69
Query: 66 TDFRPNQLAAINIALLKKDAIIIMPTGKLLKK--KKICLMTESSSLKLLYVSPEKLAKSK 123
NQ+ AI + D + + L K +++ E+ KLLYV+PE L K +
Sbjct: 70 IALMKNQVDAIR-GVSDHDGVAHVLNSSLSKTDVQQVKDDIENGITKLLYVAPESLTKEE 128
Query: 124 --SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLTA 180
F+ K QK ++ +A+DE HC S WGHDFRP+Y+ L I+ + D+PI+GLTA
Sbjct: 129 YVDFL-KQQK------ISFLAVDEAHCISEWGHDFRPEYRNLRKIIDRIGSDIPIIGLTA 181
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TAT KV D+ K LQI D +A FNRPNLFYEVR K A +D ++ +
Sbjct: 182 TATPKVQEDILKNLQITDATTFQASFNRPNLFYEVRPKTA----NVDADITRFIKQNEGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282
SGI+Y S K E+L + L+ G++ YHA L++ +IAFG
Sbjct: 238 SGIVYCLSRKRVEELAQVLQVNGIKAVPYHAGLDAKTRVKHQDMFLMEDTDVVVATIAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 298 MGIDKPDVRFVIHHDIPKSIESYYQ 322
>gi|145220257|ref|YP_001130966.1| ATP-dependent DNA helicase RecQ [Chlorobium phaeovibrioides DSM
265]
gi|145206421|gb|ABP37464.1| ATP-dependent DNA helicase RecQ [Chlorobium phaeovibrioides DSM
265]
Length = 622
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 120/326 (36%), Positives = 159/326 (48%), Gaps = 51/326 (15%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDFRPN 71
L+ F FRPNQ + L +D +MPT S ++ +VL P
Sbjct: 20 ALQKVFGFKGFRPNQREVVRALLDGRDVFAVMPTGGGKSLCYQLPAVLL---------PG 70
Query: 72 QLAAIN--IALLKKDAIIIMPTG----------KLLKKKKICLMTESSSLKLLYVSPEKL 119
I+ IAL+K G L ++K+ ES SL LLYV+PE+
Sbjct: 71 TCMVISPLIALMKDQVDGARANGIRAAYLNSSLSLADRRKVLDELESGSLDLLYVAPERF 130
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
A + +K+ ++ IDE HC S WGHDFRPDY LS L TMF DVP+ G T
Sbjct: 131 A-----LDSFRKLIGKVPVSMAVIDEAHCISEWGHDFRPDYLQLSSLVTMFRDVPVAGFT 185
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATAT +V LD + L + + ++A F+RPNL Y V KD +D + R
Sbjct: 186 ATATQRVQLDTLRRLALREPFTVRASFDRPNLTYSVLF-----KDGVDAQIVSLLRAHSG 240
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL-----ESN-------------VSIAF 281
++GIIY TS K D L+ +G R AYHA L E N +IAF
Sbjct: 241 KAGIIYRTSRKSVNDTAAMLQAKGFRALAYHAGLGDEERERNQNAFIRDEVDVIVATIAF 300
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GIDK N+RFVIH + KS+EN+YQ
Sbjct: 301 GMGIDKSNIRFVIHADMPKSIENYYQ 326
>gi|426200367|gb|EKV50291.1| hypothetical protein AGABI2DRAFT_64426 [Agaricus bisporus var.
bisporus H97]
Length = 648
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 167/332 (50%), Gaps = 28/332 (8%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS-----DRVRSVLKSK 62
SD +R LK F L++FR NQL AIN + KD ++MPT S V S +K++
Sbjct: 32 SDEIRKQLKDVFGLSEFRANQLEAINATMEGKDVFLLMPTGGGKSLCFQLPAVCSNMKTQ 91
Query: 63 FNLTDFRP-NQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLK--LLYVSPEKL 119
P L ++ L I + ++ S K LLY++PEK+
Sbjct: 92 GVTVVVSPLTALMEDQVSALTSRGISAFYWSADSPQHEVNAKLWSGDRKPALLYLTPEKI 151
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
S + L K+Y G LAR AIDE HC S+WG DFR YQ L L+ +P VPI+ LT
Sbjct: 152 KASPACRNLLLKLYNQGQLARFAIDEAHCISTWGQDFRSAYQGLGQLREDYPKVPIIALT 211
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATA D+ L++ D FNRPNL Y IK +K+ L E+ + + + N
Sbjct: 212 ATANQCTREDIVTQLKLRDHAFFTQSFNRPNLKY--FIKAKKKKNMLPEIVEFIKKEHPN 269
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL---ESN---------------VSIAF 281
+G+IY + K C+ L E+L+ G+ + +HA L E N +IAF
Sbjct: 270 HTGVIYCLARKSCQLLAEQLQKEGVAANFFHAGLSKEEKNRLLESWKADKFHVMVATIAF 329
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
G+GIDK +VRFVIHH L KS+ +YQ + G
Sbjct: 330 GMGIDKADVRFVIHHDLPKSLSGYYQETGRAG 361
>gi|317494839|ref|ZP_07953250.1| ATP-dependent DNA helicase RecQ [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316917164|gb|EFV38512.1| ATP-dependent DNA helicase RecQ [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 612
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 171/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q IN A+ +D +++MPT S D + V+
Sbjct: 15 QVLRDTFGYQQFRPGQQTIINAAIAGRDCLVVMPTGGGKSLCYQIPALVMDGLTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A ++ A + T +++++ S ++KLLY++PE+L
Sbjct: 75 ISLMKDQVDQLQANGVS-----AACLNSTQNREQQQEVYAGCRSGAIKLLYIAPERLMMD 129
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+F+ +L + +A+DE HC S WGHDFRP+Y L ++K FPD+P++ LTATA
Sbjct: 130 -NFLDQLPHWNPS----LLAVDEAHCISQWGHDFRPEYSALGLIKQRFPDIPVIALTATA 184
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D++++L + D +V + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 185 DDATRNDIERLLSLNDPLVQVSSFDRPNIRYTLIEKFKP------LDQLIRFVQEQ-RGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S + ED L++RG V AYHA L+ ++AFG
Sbjct: 238 SGIIYCNSRAKVEDTTARLQSRGFSVGAYHAGLDHEHRSSVQDAFQRDDLQIVVATVAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E +YQ
Sbjct: 298 MGINKPNVRFVVHFDIPRNIEAYYQ 322
>gi|261870780|gb|ACY02248.1| helicase [Heliconius cydno]
Length = 302
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 112/163 (68%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++ ILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 1 MFPNIXILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 60
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 61 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 120
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 121 GYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 163
>gi|300868275|ref|ZP_07112904.1| ATP-dependent DNA helicase [Oscillatoria sp. PCC 6506]
gi|300333710|emb|CBN58088.1| ATP-dependent DNA helicase [Oscillatoria sp. PCC 6506]
Length = 726
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 173/334 (51%), Gaps = 29/334 (8%)
Query: 3 PNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLK 60
P + + LK F FRP Q + AL K+D +I+MPT S ++ ++LK
Sbjct: 7 PTFTQPRSLEQALKHFFGYDSFRPGQREIVEAALSKRDMLIVMPTGGGKSLCFQLPALLK 66
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAI---IIMPTGKLLKKKKICLMTESSSLKLLYVSPE 117
+ L + L+ + I + T L++ + +KLLYV+PE
Sbjct: 67 PGLTVVVSPLIALMQDQVESLRDNGIGATFLNSTLSLMETRSRETAILDGKIKLLYVAPE 126
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
+L S+ F+ L ++ + ++ AIDE HC S WGHDFRPDY+ + ++ +P +PI+
Sbjct: 127 RLL-SERFLPFLDQVAASLGISAFAIDEAHCVSEWGHDFRPDYRQILQVRDRYPHIPIMA 185
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT +V LD+ + L + + + A FNRPNL+YEVR K K EL ++ +
Sbjct: 186 LTATATDRVRLDIMQQLALREPYIHVASFNRPNLYYEVRAK---TKHSFAELLQIIDK-- 240
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSI 279
SGIIY S K ++L +L+ G+ YHA L + ++
Sbjct: 241 NGGSGIIYCLSRKNVDELAYKLQQVGISALPYHAGLNDSDRTSNQTRFIRDDVQIMVATV 300
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
AFG+GI+KP+VRFV+H+ L +++E +YQ S G
Sbjct: 301 AFGMGINKPDVRFVVHYNLPRNLEGYYQESGRAG 334
>gi|261870782|gb|ACY02249.1| helicase [Heliconius cydno]
Length = 302
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 112/163 (68%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++ ILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 1 MFPNIXILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 60
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+R +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 61 LEKLLKYRYRGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 120
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 121 GYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 163
>gi|401401364|ref|XP_003880993.1| hypothetical protein NCLIV_040350 [Neospora caninum Liverpool]
gi|325115405|emb|CBZ50960.1| hypothetical protein NCLIV_040350 [Neospora caninum Liverpool]
Length = 1699
Score = 178 bits (452), Expect = 3e-42, Method: Composition-based stats.
Identities = 112/332 (33%), Positives = 162/332 (48%), Gaps = 74/332 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL----------- 95
+ W ++ + F FRP Q A IN L ++D ++MPT GK L
Sbjct: 653 FEWDSKIHQCNQEVFGNRSFRPMQRAIINAVLSQRDVFVMMPTGGGKSLCFQLPAVVSGG 712
Query: 96 ----KKKKICLMTES----------------------------------SSLKLLYVSPE 117
+ L+T+ + LL V+PE
Sbjct: 713 VTVVVMPLVSLITDQLEQMQLLNVGCRAFAANQPWEEQKAVYDELRRGDGEINLLLVTPE 772
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
KL S + L ++ + G L R AIDE HC S WG+DFRPDY+ L L+ +P+VP++
Sbjct: 773 KLKGSSLLRSCLHELNREGRLDRFAIDEAHCVSQWGNDFRPDYRQLQSLREEYPNVPLVA 832
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT V+ DV L++++ VV + F+RPNL YEVR P K ++++A + F
Sbjct: 833 LTATATKAVLQDVIAQLRMQEPVVFQGSFDRPNLRYEVR--PKVTKRIIEDIATTIKTEF 890
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSA--YHAKLESN------------------V 277
SGI+Y S +ECE + E L+ R+SA YHA+L+
Sbjct: 891 DGLSGIVYCLSRRECERVAEGLQKHA-RISAGFYHAQLDPEKREEIQRDWMNDDIKVIVA 949
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
++AFG+GI+K +VRFVIH + K +ENFYQ S
Sbjct: 950 TLAFGMGINKRDVRFVIHCAMPKCLENFYQES 981
>gi|395213964|ref|ZP_10400385.1| ATP-dependent DNA helicase RecQ [Pontibacter sp. BAB1700]
gi|394456500|gb|EJF10790.1| ATP-dependent DNA helicase RecQ [Pontibacter sp. BAB1700]
Length = 726
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 113/325 (34%), Positives = 172/325 (52%), Gaps = 43/325 (13%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+++ LK F FR NQ IN + K+ +IMPT S V+
Sbjct: 9 LKNKLKEVFGYNQFRGNQELIINNIINGKNTFVIMPTGAGKSLCYQLPALSLPGTAIVIS 68
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
L + +QL A + +A + T + K+ T + +KLLYV+PE L
Sbjct: 69 PLIALMKNQVDQLNAFGV-----NAHFLNSTLSKSEINKVKKETLAGEVKLLYVAPESLT 123
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
K ++ + +A ++ +AIDE HC S WGHDFRP+Y+ + + ++PI+ LTA
Sbjct: 124 KEETV-----EFLRASNISFVAIDEAHCISEWGHDFRPEYRRIRGIIDQIGNLPIIALTA 178
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TAT KV LD+Q+ LQ+++ V K+ FNR NL+YEVR K +K + + ++ + +
Sbjct: 179 TATPKVQLDIQRNLQMDEASVFKSSFNRTNLYYEVRPKHNTKKQVIQYV-----KKHKGK 233
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282
SG+IY S K+ E++ E LR ++ YHA L+SN+ +IAFG
Sbjct: 234 SGVIYCLSRKKVEEIAELLRVNDIKALPYHAGLDSNIRMANQDAFLNEEADVIVATIAFG 293
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GIDKP+VRFVIH+ KS+E +YQ
Sbjct: 294 MGIDKPDVRFVIHYDTPKSIEGYYQ 318
>gi|390943602|ref|YP_006407363.1| ATP-dependent DNA helicase RecQ [Belliella baltica DSM 15883]
gi|390417030|gb|AFL84608.1| ATP-dependent DNA helicase RecQ [Belliella baltica DSM 15883]
Length = 725
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 113/326 (34%), Positives = 172/326 (52%), Gaps = 42/326 (12%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
V+ LK F + FR NQ A ++ L + +IMPT S + V+
Sbjct: 5 VKENLKEIFGFSQFRGNQEAIVDNILGGSNTFVIMPTGAGKSLCYQLPAVIKNGTAVVIS 64
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
L + +QL A I +A + T + K+ + + KLLYV+PE L
Sbjct: 65 PLIALMKNQVDQLNAFGI-----NAYFLNSTLNKSETNKVKKEVLAGNTKLLYVAPESLT 119
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLT 179
K ++ K K ++ +AIDE HC S WGHDFRP+Y+ + SI+ + +PI+ LT
Sbjct: 120 KEENV-----KFLKEANISFVAIDEAHCISEWGHDFRPEYRRIKSIIAQIGEKLPIIALT 174
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATAT KV D+Q+ LQ+E+ + K+ FNR NL+YEVR P + + ++ + + +
Sbjct: 175 ATATPKVQQDIQRNLQMEEADLFKSSFNRTNLYYEVR--PKIKNETKKQIIKYIKGQ-KG 231
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 281
+SGIIY S K+ E++ L+ G+ + YHA L+ NV +IAF
Sbjct: 232 KSGIIYCLSRKKVEEIASLLKVNGINAAPYHAGLDQNVRIKNQDDFLNEELDVIVATIAF 291
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GIDKP+VR+VIH+ + KS+E +YQ
Sbjct: 292 GMGIDKPDVRYVIHYDVPKSLEGYYQ 317
>gi|50288805|ref|XP_446832.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526141|emb|CAG59763.1| unnamed protein product [Candida glabrata]
Length = 718
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 108/341 (31%), Positives = 159/341 (46%), Gaps = 74/341 (21%)
Query: 38 KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK---- 93
KK+ + T PW +V+++LK F++ FR +Q+ IN L K ++M TG
Sbjct: 71 KKENKSSLNTANPWDKQVQNILKCTFHMEQFRGSQIDIINSTLQGKHVFVLMCTGGGKSL 130
Query: 94 ----------------------------------LLKKKKICLMT--------------- 104
+ K+ K C+++
Sbjct: 131 CYQLPSLVTLGYTKGTTIVISPLISLMHDQVEALISKRIKACMLSSTSSSKQKTMALQLL 190
Query: 105 ESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLS 164
L L Y+SPE + S ++++Y+ LAR+ IDE HC SSWGHDFRP+Y+ L
Sbjct: 191 SEGKLNLFYISPEMVMGSSPCKGIIRRLYRQNRLARLVIDEAHCISSWGHDFRPEYKKLG 250
Query: 165 ILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKD 224
L F VP++ LTATA + D+ K+L +++ VV K NR NL+YEV K +
Sbjct: 251 QLTKEFDGVPVMALTATANDNIQEDILKILNLKNVVVFKDSLNRKNLYYEVVQKNSRT-- 308
Query: 225 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN-------- 276
++ + L+ F QSGIIY S CE + +EL + YHA +N
Sbjct: 309 -IEYMTYLLKTEFHGQSGIIYCNSKASCEKVSKELNQANISSEFYHAGKTANSRLNTQRK 367
Query: 277 ----------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDK NVRFV H+ + +SME +YQ
Sbjct: 368 WQQGTIQVVCATIAFGMGIDKENVRFVFHYDIPRSMEGYYQ 408
>gi|379642609|ref|NP_001243837.1| Bloom syndrome, RecQ helicase-like [Xenopus (Silurana) tropicalis]
Length = 1327
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 154/301 (51%), Gaps = 40/301 (13%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTES- 106
++P S + + KF L FR NQL AIN LL +D I+MPTG K +C
Sbjct: 602 NFPHSKEMMKIFHKKFGLHRFRTNQLEAINACLLGEDCFILMPTGG---GKSLCYQLPGC 658
Query: 107 ---------SSLKLLYVSP-EKLAK-----SKSFMTKLQKMYKAGCLARIAIDEVHCCSS 151
S L+ L V +KL S ++ ++ +Y+ LAR IDE HC S
Sbjct: 659 VSPGVTIVISPLRSLIVDQVQKLTSLDVCASTRLISTMENLYERQLLARFVIDEAHCVSQ 718
Query: 152 WGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNL 211
WGHDFRPDY+ L++L+ F VP++ LTATA +V D+ L++ + FNR NL
Sbjct: 719 WGHDFRPDYKRLNMLRQKFQSVPMMALTATANPRVQKDILNQLKMTKPQIFTMSFNRDNL 778
Query: 212 FYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA 271
Y+V P K + + + + N SGIIY S EC+ + + L+ GL AYHA
Sbjct: 779 KYDVL--PKKPKRVALDCVEWIKKYHPNDSGIIYCLSRHECDTMADTLQKGGLAALAYHA 836
Query: 272 KL-ESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAF 312
L +SN +IAFG+GIDKP+VR+VIH L KS+E +YQ S
Sbjct: 837 GLADSNRDYVQHKWINQDDCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRA 896
Query: 313 G 313
G
Sbjct: 897 G 897
>gi|365833970|ref|ZP_09375421.1| ATP-dependent DNA helicase RecQ [Hafnia alvei ATCC 51873]
gi|364570619|gb|EHM48223.1| ATP-dependent DNA helicase RecQ [Hafnia alvei ATCC 51873]
Length = 612
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 171/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q IN A+ +D +++MPT S + + V+
Sbjct: 15 QVLRDTFGYQQFRPGQQTIINAAIAGRDCLVVMPTGGGKSLCYQIPALVMEGLTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A ++ A + T +++++ S ++KLLY++PE+L
Sbjct: 75 ISLMKDQVDQLQANGVS-----AACLNSTQNREQQQEVYAGCRSGAIKLLYIAPERLMMD 129
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+F+ +L A +A+DE HC S WGHDFRP+Y L ++K FPD+P++ LTATA
Sbjct: 130 -NFLDQLPHWNPA----LLAVDEAHCISQWGHDFRPEYSALGLIKQRFPDIPVIALTATA 184
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D++++L + D +V + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 185 DDATRNDIERLLSLNDPLVQVSSFDRPNIRYTLIEKFKP------LDQLIRFVQEQ-RGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S + ED L++RG V AYHA L+ ++AFG
Sbjct: 238 SGIIYCNSRAKVEDTTARLQSRGFSVGAYHAGLDHEHRSSVQDAFQRDDLQIVVATVAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E +YQ
Sbjct: 298 MGINKPNVRFVVHFDIPRNIEAYYQ 322
>gi|325110491|ref|YP_004271559.1| ATP-dependent DNA helicase RecQ [Planctomyces brasiliensis DSM
5305]
gi|324970759|gb|ADY61537.1| ATP-dependent DNA helicase RecQ [Planctomyces brasiliensis DSM
5305]
Length = 741
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/325 (33%), Positives = 171/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
+VLK + FRP Q AI L ++D+++++PT S D + V+
Sbjct: 25 AVLKRYWGYDSFRPLQEEAIRAVLQRRDSVVVLPTGGGKSLCYQVPAALRDGLAVVVSPL 84
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
L + + L + I+ A + + ++++I E+ + +LYV+PE+L
Sbjct: 85 IALMKDQVDALTDLGIS-----AAAVNSSLPAEERRQIARRVEAGEISMLYVAPERLCNE 139
Query: 123 K--SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+ F+++ Q + IA+DE HC SSWGH FRP+Y+ L L+ FP+V I TA
Sbjct: 140 RMLDFLSRQQVSF-------IAVDEAHCISSWGHQFRPEYRLLGSLRDRFPNVDIHAYTA 192
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TAT +V D+ L + + + F+RPNL Y R+ P ++D ++ +++ RF+ Q
Sbjct: 193 TATAQVRDDIAAQLDLREPELHVGNFDRPNLTY--RVVP--RQDSKKQIREVLD-RFKGQ 247
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S K+ ++L E L G R +AYHA LE + ++AFG
Sbjct: 248 SGIIYCISRKQVDELNEYLNQSGFRSAAYHAGLEHDQRQAAQDAFLSEQVDIVVATVAFG 307
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GIDKPNVRFVIH +KS+EN+ Q
Sbjct: 308 MGIDKPNVRFVIHASSTKSLENYQQ 332
>gi|30690466|ref|NP_849500.1| ATP-dependent DNA helicase Q-like 3 [Arabidopsis thaliana]
gi|332661157|gb|AEE86557.1| ATP-dependent DNA helicase Q-like 3 [Arabidopsis thaliana]
Length = 620
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 138/236 (58%), Gaps = 29/236 (12%)
Query: 108 SLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
S++LLYV+PE +A +K FM KL+K++ G L IAIDE HC SSWGHDFRP Y+ LS L+
Sbjct: 35 SVRLLYVTPELIA-TKGFMLKLRKLHSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLR 93
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLD 227
DVP+L LTATA KV DV L + + +V+K+ FNRPN+FYEVR KD LD
Sbjct: 94 DSLADVPVLALTATAAPKVQKDVIDSLNLRNPLVLKSSFNRPNIFYEVRY-----KDLLD 148
Query: 228 ----ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------ 277
+L +L+ + N IIY C+DL L + G+ +AYHA L S +
Sbjct: 149 NAYTDLGNLL-KSCGNICAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLD 207
Query: 278 ------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRS 321
++AFG+GIDK +VR V H + KSME+FYQ S G + RS
Sbjct: 208 DWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRS 263
>gi|373957711|ref|ZP_09617671.1| ATP-dependent DNA helicase RecQ [Mucilaginibacter paludis DSM
18603]
gi|373894311|gb|EHQ30208.1| ATP-dependent DNA helicase RecQ [Mucilaginibacter paludis DSM
18603]
Length = 731
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 169/324 (52%), Gaps = 45/324 (13%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFN 64
L++ F +F+ Q A I L D +IMPT S D + V+
Sbjct: 12 LQNFFGFDNFKGEQEAIITNILSGNDTFVIMPTGGGKSMCYQLPALMTDGMAIVISPLIA 71
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKK--KICLMTESSSLKLLYVSPEKLAKS 122
L + +QL A D+I L K + K+ S KLLYV+PE L K
Sbjct: 72 LMKNQVDQLRAFG----GSDSIAHFLNSSLTKSEITKVKEDVLSGKTKLLYVAPESLTKQ 127
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLTAT 181
++ + ++ +A+DE HC S WGHDFRP+Y+ + ++ + ++PI+ LTAT
Sbjct: 128 ENI-----DFLRLNSVSFVAVDEAHCISEWGHDFRPEYRKIRQVISNIGENIPIIALTAT 182
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQS 241
AT KV D+QK LQ+ + + K+ FNR NLFYEVR A+++ L E+ + ++ +S
Sbjct: 183 ATPKVQQDIQKNLQMNNATIYKSSFNRGNLFYEVR----AKRNVLKEIVRFV-KQHTGKS 237
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGL 283
GIIY S K+ E++ E L G++ YHA L++ V +IAFG+
Sbjct: 238 GIIYCLSRKKVEEVAEALSLNGVKALPYHAGLDAKVRADTQDRFLMEDVDVIVATIAFGM 297
Query: 284 GIDKPNVRFVIHHCLSKSMENFYQ 307
GIDKP+VR+VIHH + KSME +YQ
Sbjct: 298 GIDKPDVRYVIHHDVPKSMEGYYQ 321
>gi|360043045|emb|CCD78457.1| putative blooms syndrome DNA helicase [Schistosoma mansoni]
Length = 881
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 156/296 (52%), Gaps = 32/296 (10%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDY--------------- 49
+P S R+ F L FR NQL AIN ALL +D +IMPTD
Sbjct: 375 FPHSKRMMEAFSKMFGLRSFRRNQLQAINAALLDRDCFVIMPTDITVMCASVHLFRSIVS 434
Query: 50 ----PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKI----- 100
++ +V++S + P L A+ + + K + +P L + +
Sbjct: 435 RGGKSLCYQLPAVVQSGLTVV-ISP--LKALVLDQVTKLQSLGVPAAHLTGEASLSETDQ 491
Query: 101 ---CLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFR 157
L + LKLLYV+PEK+A S L+++YK L R IDE HC S WGHDFR
Sbjct: 492 VYTALHMANLRLKLLYVTPEKIAASDKLKGCLEQLYKRKRLDRFVIDEAHCVSQWGHDFR 551
Query: 158 PDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRI 217
PDY+ L+IL+ FPDVP++ +TATAT KV D+ L++ + FNR NL +EVR
Sbjct: 552 PDYRNLNILRINFPDVPMMAMTATATPKVRRDILLQLKMTNTKWFIQSFNRANLRFEVR- 610
Query: 218 KPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL 273
P K+C E+ D++ F +SGI+Y S +EC+ + EEL+ GL+ SAYHA +
Sbjct: 611 -PKKLKNCTKEIIDVIRNEFPKRSGIVYCLSRRECDVVAEELKAAGLQASAYHAGM 665
>gi|406699602|gb|EKD02803.1| hypothetical protein A1Q2_02878 [Trichosporon asahii var. asahii
CBS 8904]
Length = 929
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 113/338 (33%), Positives = 172/338 (50%), Gaps = 40/338 (11%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKF 63
+ WS V L+ F L +FR +Q AI+ + +D + + V V+
Sbjct: 183 QFAWSKEVNQKLRQVFMLPNFRTHQKEAIDETMAGRDDQLPAICSQGKTRGVTFVVSPLI 242
Query: 64 NLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS----LKLLYVSPEKL 119
+L + + L +K++ I TG L + K E K++YV+PE L
Sbjct: 243 SLINDQTRHL-------IKRNIPAIAYTGDLTQADKNIAHAELDRPVPYTKVVYVTPEML 295
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
+ L+ + + LAR IDE HC S WGHD L L+ +P +PI+ LT
Sbjct: 296 SMGSRIQGILRGLEQRKQLARFVIDEAHCVSGWGHD-------LGDLRKDYPGIPIMALT 348
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATA KV D+ ++L I C V+K FNRPNL YEVR K QK+ L+++ + + + +
Sbjct: 349 ATAPEKVQDDIIRVLGIRGCTVLKQSFNRPNLHYEVRPK---QKNVLEKIVNFIKTQTQG 405
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAF 281
SGI+Y +S ++CE + +ELR++ +R YHA + +IAF
Sbjct: 406 VSGIVYCSSREKCEIIAKELRDKDIRAWHYHAGMTKGDRRKIQEGWQEHKFEVIVATIAF 465
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
G+GIDKP+VR+VIHH L +S+E +YQ + G GK+S
Sbjct: 466 GMGIDKPDVRYVIHHSLPRSLEGYYQETGRAGRDGKNS 503
>gi|403222103|dbj|BAM40235.1| DNA helicase [Theileria orientalis strain Shintoku]
Length = 887
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 117/357 (32%), Positives = 180/357 (50%), Gaps = 56/357 (15%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS------------ 52
+ WS++V+ + + F+ FR NQL+AIN L D +I+PT S
Sbjct: 166 FEWSNQVKKINEEVFHNPSFRLNQLSAINCILSNNDTFVIIPTGGGKSLCFQLPAVYDTL 225
Query: 53 ---DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE---- 105
V+ +L + + N+L + I+ AI+ G L +K+ ++ +
Sbjct: 226 TGRGSTTIVIMPLLSLIEDQVNRLKELKISCR---AIV----GDLKLSEKLSILKDLSRG 278
Query: 106 ------------SSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWG 153
S + +L+++PE L S L MY+ G ++R +DEVHC S WG
Sbjct: 279 TKGPGGYQGGEGGSDISVLFITPESLVSSNILKNSLLSMYRNGQISRFVLDEVHCVSQWG 338
Query: 154 HDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFY 213
+DFRP+Y L +++ FP+VPI+ LTATAT V+ DV L + D VV K+ FNR NL Y
Sbjct: 339 NDFRPNYGKLGMIRANFPEVPIVALTATATESVIKDVILKLNLRDVVVFKSDFNRKNLEY 398
Query: 214 EVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELR------------N 261
V K + K + +L +++ F++ GI+Y S E E + EL +
Sbjct: 399 VVVEKQRSFKLAIKQLTEIV-ENFKDSCGIVYCFSCNESERVSRELSKVTSCFHYHAQMS 457
Query: 262 RGLRVSAYHAKLESNV-----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+R Y+ + NV +IAFG+GIDK +VRFV+H LSKS+EN++Q S G
Sbjct: 458 TAMRTRVYNDWINDNVRVIVATIAFGMGIDKKDVRFVVHFSLSKSVENYFQESGRAG 514
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG 92
++ WS++V+ + + F+ FR NQL+AIN L D +I+PTG
Sbjct: 165 EFEWSNQVKKINEEVFHNPSFRLNQLSAINCILSNNDTFVIIPTG 209
>gi|385301828|gb|EIF45990.1| atp-dependent helicase [Dekkera bruxellensis AWRI1499]
Length = 358
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 136/229 (59%), Gaps = 22/229 (9%)
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
L L+Y SPE ++ S ++K+++ G LAR+ +DE HC SSWGHDFRPDY+ LS K
Sbjct: 39 LDLVYFSPEMISASGQCKRAIEKLHRDGRLARVVVDEAHCVSSWGHDFRPDYKALSYFKE 98
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
+PD+P++ LTATA V LD+ L++ +K FNR NL+Y V K +K+ +
Sbjct: 99 QYPDIPVMALTATANDHVCLDIVHNLKLSSPKFLKQSFNRTNLYYGVVPK---KKNTVQR 155
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
+A+L+++++ N +GIIY S CE E+L G++ YHA + +
Sbjct: 156 IAELINKKYTNYTGIIYCHSKNSCEHTSEKLCAFGIKCDFYHAGMSTEDRSRVQMAWQHD 215
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDKP+VRFVIH + +++E +YQ + G GKHS
Sbjct: 216 QIKVICATIAFGMGIDKPDVRFVIHLTMPRNLEGYYQETGRAGRDGKHS 264
>gi|322834919|ref|YP_004214946.1| ATP-dependent DNA helicase RecQ [Rahnella sp. Y9602]
gi|384260143|ref|YP_005404077.1| ATP-dependent DNA helicase RecQ [Rahnella aquatilis HX2]
gi|321170120|gb|ADW75819.1| ATP-dependent DNA helicase RecQ [Rahnella sp. Y9602]
gi|380756119|gb|AFE60510.1| ATP-dependent DNA helicase RecQ [Rahnella aquatilis HX2]
Length = 610
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 173/325 (53%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q IN AL +D +++MPT S D + V+
Sbjct: 15 QVLRDTFGYQQFRPGQQTIINTALSGRDCLVVMPTGGGKSLCYQIPALVMDGLTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A + +A + T ++ ++ + +K+LY++PE+L
Sbjct: 75 ISLMKDQVDQLMAAGV-----EAGCLNSTQTREQQLEVMAGCRAGRIKMLYIAPERLMMG 129
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
F+ +LQ+ A +A+DE HC S WGHDFRP+Y+ L LK +P +P++ LTATA
Sbjct: 130 -DFLEQLQQWNPA----MLAVDEAHCISQWGHDFRPEYRALGQLKLRYPQLPVIALTATA 184
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L++ D ++ + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 185 DEATRNDIVRLLELNDPLIQVSSFDRPNIRYTLVEKFKP------LDQLIRFVQDQ-RGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282
SGIIY S + ED L++RGL V AYHA L+++ ++AFG
Sbjct: 238 SGIIYCNSRAKVEDTAARLQSRGLSVGAYHAGLDNDTRARVQEGFQRDDLQIVVATVAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 298 MGINKPNVRFVVHFDIPRTIESYYQ 322
>gi|238763624|ref|ZP_04624584.1| ATP-dependent DNA helicase recQ [Yersinia kristensenii ATCC 33638]
gi|238698102|gb|EEP90859.1| ATP-dependent DNA helicase recQ [Yersinia kristensenii ATCC 33638]
Length = 610
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 108/325 (33%), Positives = 172/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q IN L +D +++MPT S D + V+
Sbjct: 15 QVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A + A + + ++ + S +KLLY++PE+L
Sbjct: 75 ISLMKDQVDQLLAYGVG-----AGCLNSSQTREQQLAVMDGCRSGQIKLLYIAPERLVM- 128
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+SF+ +L + A +A+DE HC S WGHDFRP+Y+ L LK FPD+P++ LTATA
Sbjct: 129 ESFLDQLHQWRPA----LLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATA 184
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L +E+ ++ + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 185 DEATRGDIVRLLNLENPLIQVSSFDRPNIRYTLVEKFKP------LDQLWRFVQDQ-RGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S + ED L++RGL V+AYHA L++ ++AFG
Sbjct: 238 SGIIYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 298 MGINKPNVRFVVHFDIPRTIESYYQ 322
>gi|221040662|dbj|BAH12008.1| unnamed protein product [Homo sapiens]
Length = 1047
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 121/331 (36%), Positives = 170/331 (51%), Gaps = 41/331 (12%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YP 50
++P + + + KF L +FR NQL AIN ALL +D I+MPT P
Sbjct: 301 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 360
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINI--ALLKKDAIIIMPTGKLLKKKKICLMTESSS 108
V S L+S L + +L +++I L D T L+ L +
Sbjct: 361 GVTVVISPLRS---LIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQ-----LSKKDPI 412
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+
Sbjct: 413 IKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQ 472
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK--DCL 226
FP VP++ LTATA +V D+ L+I V FNR NL Y V K + DCL
Sbjct: 473 KFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL 532
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELR----NRGLRVSAYHAKLESNVSIAFG 282
+ + + SGIIY S +EC+ + + L+ G +V +IAFG
Sbjct: 533 ----EWIRKHHPYDSGIIYCLSRRECDTMADTLQKWINQDGCQVIC--------ATIAFG 580
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+GIDKP+VRFVIH L KS+E +YQ S G
Sbjct: 581 MGIDKPDVRFVIHASLPKSVEGYYQESGRAG 611
>gi|409082538|gb|EKM82896.1| hypothetical protein AGABI1DRAFT_104723 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 682
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 119/323 (36%), Positives = 164/323 (50%), Gaps = 19/323 (5%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS-----DRVRSVLKSK 62
SD +R LK F L++FR NQL AIN + KD ++MPT S V S +K++
Sbjct: 90 SDEIRKQLKDVFGLSEFRANQLEAINATMEGKDVFLLMPTGGGKSLCFQLPAVCSNIKTQ 149
Query: 63 FNLTDFRP-NQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLK--LLYVSPEKL 119
P L ++ L I + ++ S K LLY++PEK+
Sbjct: 150 GVTVVVSPLTALMEDQVSALTSRGISAFYWSADSPQHEVNAKLWSGDRKPALLYLTPEKI 209
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
S + L K+Y G LAR AIDE HC S+WG DFR YQ L L+ +P VPI+ LT
Sbjct: 210 KASPACRNLLLKLYNQGQLARFAIDEAHCISTWGQDFRSAYQGLGQLREDYPKVPIIALT 269
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATA D+ L++ D FNRPNL Y IK +K+ L E+ + + + N
Sbjct: 270 ATANQCTREDIVTQLKLRDHAFFTQSFNRPNLKY--FIKAKKKKNMLPEIVEFIKKEHPN 327
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES---------NVSIAFGLGIDKPNV 290
+G+IY + K C+ L E+L+ GL + LES +IAFG+GIDK +V
Sbjct: 328 HTGVIYCLARKSCQLLAEQLQKEGLSKEEKNRLLESWKADKFHVMVATIAFGMGIDKADV 387
Query: 291 RFVIHHCLSKSMENFYQVSIAFG 313
RFVIHH L KS+ +YQ + G
Sbjct: 388 RFVIHHDLPKSLSGYYQETGRAG 410
>gi|345866766|ref|ZP_08818787.1| ATP-dependent DNA helicase RecQ [Bizionia argentinensis JUB59]
gi|344048686|gb|EGV44289.1| ATP-dependent DNA helicase RecQ [Bizionia argentinensis JUB59]
Length = 733
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 173/329 (52%), Gaps = 46/329 (13%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DRVRSVLKS 61
+ S LK+ F + F+ Q + L KD +IMPT S +++ S
Sbjct: 8 LHSALKTYFGFSAFKGLQEPVVKSILSGKDTFVIMPTGGGKSLCYQLPALMQEGTAIVVS 67
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKK--KKICLMTESSSLKLLYVSPEKL 119
L NQ+ AI + D + + L K +++ S KLLYV+PE L
Sbjct: 68 P--LIALMKNQVDAIR-GISDHDGVAHVLNSSLNKTEIRQVKEDITSGITKLLYVAPESL 124
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGL 178
K ++ + ++ ++ +A+DE HC S WGHDFRP+Y+ L SI++ + ++PI+GL
Sbjct: 125 TKEENV-----EFLRSVKISFMAVDEAHCISEWGHDFRPEYRNLKSIIERIGDNIPIIGL 179
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS--RR 236
TATAT KV D+ K L I D KA FNRPNL+YEVR K AD++ ++
Sbjct: 180 TATATPKVQEDILKNLNINDAKTFKASFNRPNLYYEVRPKTKHVD------ADIIRFVKK 233
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
+ +SGI+Y S K E+L + L+ G++ YHA L++ +
Sbjct: 234 YEGKSGIVYCLSRKRVEELAQTLQVNGIKAVPYHAGLDAKSRARHQDMFLMEDVDVVVAT 293
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
IAFG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 294 IAFGMGIDKPDVRFVIHHDIPKSIESYYQ 322
>gi|406674061|ref|ZP_11081273.1| ATP-dependent DNA helicase RecQ [Bergeyella zoohelcum CCUG 30536]
gi|405584835|gb|EKB58711.1| ATP-dependent DNA helicase RecQ [Bergeyella zoohelcum CCUG 30536]
Length = 733
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 116/323 (35%), Positives = 165/323 (51%), Gaps = 44/323 (13%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFN 64
LK F + F+ Q I+ L KD ++MPT S + V+
Sbjct: 12 LKKYFGFSTFKGRQEEVISSLLEGKDVFVLMPTGGGKSLCYQLPALLLEGTAIVVSP--- 68
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKL--LKKKKICLMTESSSLKLLYVSPEKLAKS 122
L NQ+ A+N L +D + + L + +++ E KLLYV+PE L K
Sbjct: 69 LIALMKNQVDAVN-GLSNEDGVAHVLNSSLNRTQTQQVFDDIEKGKTKLLYVAPESLIKD 127
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+ K+ ++ +AIDE HC S WGHDFRP+Y+ L + DVPI+ LTATA
Sbjct: 128 E-----YSDFLKSVKISFVAIDEAHCISEWGHDFRPEYRNLKNIIEKIADVPIIALTATA 182
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSG 242
T KV D+QK L + D V K+ FNRPNL+YEVR K K E+ +++R + +SG
Sbjct: 183 TPKVQDDIQKTLGMSDAEVYKSSFNRPNLYYEVRPKINVDK----EIVKFINQR-KGKSG 237
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 284
IIY S K+ E+ + L+ G+ YHA L+ +IAFG+G
Sbjct: 238 IIYCLSRKKVEEFAQLLQVNGINALPYHAGLDQKTRVANQDKFLMEECDVIVATIAFGMG 297
Query: 285 IDKPNVRFVIHHCLSKSMENFYQ 307
IDKP+VRFVIH+ KS+E++YQ
Sbjct: 298 IDKPDVRFVIHYDFPKSLESYYQ 320
>gi|440756898|ref|ZP_20936098.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa TAIHU98]
gi|440172927|gb|ELP52411.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa TAIHU98]
Length = 701
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 114/329 (34%), Positives = 169/329 (51%), Gaps = 31/329 (9%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLT 66
D + VLK F FRPNQ I AL +D ++IMPT S ++ +++K +
Sbjct: 5 DSLEKVLKHHFGYDQFRPNQRQIIEAALNDQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 67 DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKI----CLMTESSSLKLLYVSPEKLAKS 122
L + L + I L K++ L+ + +KLLYV+PE+L S
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRDRESLILQ-GKIKLLYVAPERLL-S 122
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
SF+ L + LA +A+DE HC S WGHDFRP+Y+ + ++ FP VPIL LTATA
Sbjct: 123 PSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATA 182
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSG 242
T +V D+ + L + D + A FNRPNL+YEVR K + L + + + SG
Sbjct: 183 TQQVREDIIQQLGLRDASIHIASFNRPNLYYEVRAKTSKSYQQLYQYI-----KGQKGSG 237
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLG 284
I+Y S K + + E+L+ G+ YHA + +IAFG+G
Sbjct: 238 IVYCISRKTVDQVAEQLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATIAFGMG 297
Query: 285 IDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
I+KP+VRFV+H+ L +++E +YQ S G
Sbjct: 298 INKPDVRFVVHYDLPRNLEGYYQESGRAG 326
>gi|242237700|ref|YP_002985881.1| ATP-dependent DNA helicase RecQ [Dickeya dadantii Ech703]
gi|242129757|gb|ACS84059.1| ATP-dependent DNA helicase RecQ [Dickeya dadantii Ech703]
Length = 607
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 108/325 (33%), Positives = 172/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
+L+ F FRP Q A I+ A+ +D ++IMPT S D + V+
Sbjct: 15 QILRETFGYQQFRPGQQAIIHAAVSGRDCLVIMPTGGGKSLCYQIPALVLDGLTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A ++ A + T ++ + S ++LLY++PE+L +
Sbjct: 75 ISLMKDQVDQLQAYGVS-----AACLNSTQTREQQMAVIAGCRSGQIRLLYIAPERLT-N 128
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+ F+ + + + IAIDE HC S WGHDFRP+Y+ L +K FP +P++ LTATA
Sbjct: 129 EGFLEQ----FTGWNPSLIAIDEAHCISQWGHDFRPEYRELGYIKQRFPQLPVVALTATA 184
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L + D +V + F+RPN+ Y + + KP LD+L L + R +
Sbjct: 185 DETTRNDIIRLLGLRDPLVQISSFDRPNIRYTLVEKFKP------LDQLW-LFVQGQRGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S + ED+ L+NRGL V AYHA L++ ++AFG
Sbjct: 238 SGIIYCNSRAKVEDISARLQNRGLSVGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 298 MGINKPNVRFVVHFDIPRTIESYYQ 322
>gi|332667951|ref|YP_004450739.1| ATP-dependent DNA helicase RecQ [Haliscomenobacter hydrossis DSM
1100]
gi|332336765|gb|AEE53866.1| ATP-dependent DNA helicase RecQ [Haliscomenobacter hydrossis DSM
1100]
Length = 713
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 120/334 (35%), Positives = 173/334 (51%), Gaps = 57/334 (17%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YPWSDRV 55
D+ + LK F FRP Q I KDA+++MPT P + V
Sbjct: 4 DKAKQALKRYFGYDQFRPLQAEIIRAIFAGKDALVLMPTGGGKSVCFQIPAVTMPGTCVV 63
Query: 56 RSVLKS--KFNLTDFRPN--QLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
S L S K + R N Q A +N A+ ++ + K+ + +L L
Sbjct: 64 VSPLISLMKDQVEGLRANGIQAAFLNSAIDSREQL------------KVEESFYAGALNL 111
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYVSPEKL S +F++ L K G + AIDE HC S+WGHDFRP+Y + +LK FP
Sbjct: 112 LYVSPEKLV-SGNFVSIL----KRGKINLFAIDEAHCISAWGHDFRPEYTQMGMLKQHFP 166
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP++ LTATA D+ L++E+ + A F+RPNL EVR P Q+ L ++ +
Sbjct: 167 QVPVIALTATADKLTRKDIVDQLKLEEPGIFIASFDRPNLSLEVR--PGQQR--LGQIQE 222
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA--------KLESN------- 276
+ + + Q+GIIY S K ED+ +L +GL+ AYHA K++ N
Sbjct: 223 FVQKHPK-QAGIIYCLSRKTAEDVAAKLAQQGLKAEAYHAGLSPDRRSKIQDNFINDNIH 281
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GIDK NVR+VIH+ L K++E +YQ
Sbjct: 282 IICATVAFGMGIDKSNVRWVIHYNLPKNLEGYYQ 315
>gi|313677434|ref|YP_004055430.1| ATP-dependent DNA helicase recQ [Marivirga tractuosa DSM 4126]
gi|312944132|gb|ADR23322.1| ATP-dependent DNA helicase RecQ [Marivirga tractuosa DSM 4126]
Length = 725
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 115/323 (35%), Positives = 165/323 (51%), Gaps = 39/323 (12%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--------DYPWSDRVRSVLKSK 62
++ LK F FR NQ + + K+ +IMPT P R + L
Sbjct: 9 LKEKLKEVFGYNQFRGNQELIMQNLINGKNTFVIMPTGAGKSLCYQLPAISREGTALVVS 68
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
L NQ+ + L +A + T + K++ S +LKLLYV+PE L K
Sbjct: 69 -PLIALMKNQVDTL--VALGVNAAFLNSTLTKTETKRVKKEVMSGNLKLLYVAPESLTKE 125
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
++ + K ++ AIDE HC S WGHDFRP+Y+ + + ++PI+ LTATA
Sbjct: 126 ENV-----EFLKQANISFAAIDEAHCISEWGHDFRPEYRRIKSILQQISNIPIIALTATA 180
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSG 242
T KV LD+QK L +E+ V K+ FNR NL+YEVR K A+K +L ++ R + + G
Sbjct: 181 TPKVQLDIQKNLNMEEANVFKSSFNRENLYYEVRPKNQAKK----QLIRFLNER-KGKCG 235
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 284
+IY S K+ E++ E L G + YHA LE +IAFG+G
Sbjct: 236 VIYCLSRKKVEEIAEFLNVNGFNAAPYHAGLEGATRMKNQDDFLNEDVDIIVATIAFGMG 295
Query: 285 IDKPNVRFVIHHCLSKSMENFYQ 307
IDKP+VRFVIH+ KS+E +YQ
Sbjct: 296 IDKPDVRFVIHYDTPKSVEGYYQ 318
>gi|302692420|ref|XP_003035889.1| hypothetical protein SCHCODRAFT_50616 [Schizophyllum commune H4-8]
gi|300109585|gb|EFJ00987.1| hypothetical protein SCHCODRAFT_50616, partial [Schizophyllum
commune H4-8]
Length = 474
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 117/344 (34%), Positives = 165/344 (47%), Gaps = 40/344 (11%)
Query: 2 LPNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT-------------- 47
L P+ + L F L FR NQL AI + KD ++MPT
Sbjct: 27 LKKTPFYPEIVQKLHRFFRLQTFRKNQLQAITATMEGKDVFVLMPTGGGKSLCYQLPAIC 86
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESS 107
+ + V ++ L + + L I L+ + T L ++ M ++
Sbjct: 87 EGGSTKGVTIIVSPLLALMEDQVENLTRRGIEALQWTSADARDTPSLDVNRR---MYSNN 143
Query: 108 SLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
+LLYV+PEK+ S + L ++ G +AR IDE HC SSWGHDFR Y L L+
Sbjct: 144 RPRLLYVTPEKMHNSGQAKSLLSYLHGRGLIARFVIDEAHCISSWGHDFRSAYLALGQLR 203
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLD 227
+P VPI+ LTATAT + D+ K L+IE CV + FNR NL Y V K +
Sbjct: 204 QTYPGVPIMALTATATPRAADDIVKNLRIERCVRLTQSFNRTNLHYSV-----VPKQKMS 258
Query: 228 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL------------ES 275
+A ++ +SGIIYT S K E E+LR G+ YHA + +S
Sbjct: 259 TIAKWINETHPGESGIIYTLSKKNAEVGAEQLRKEGVSAEYYHAGMTDEDRKTVYMNWKS 318
Query: 276 N------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
N +IAFG+GIDK +VRFVIHH + KS++ +YQ + G
Sbjct: 319 NRTQVMVATIAFGMGIDKADVRFVIHHSIPKSLDGYYQETGRAG 362
>gi|297802358|ref|XP_002869063.1| hypothetical protein ARALYDRAFT_491073 [Arabidopsis lyrata subsp.
lyrata]
gi|297314899|gb|EFH45322.1| hypothetical protein ARALYDRAFT_491073 [Arabidopsis lyrata subsp.
lyrata]
Length = 744
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 130/368 (35%), Positives = 176/368 (47%), Gaps = 67/368 (18%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YPWSDRVRSVLK 60
+L+ F DFR QL AI + +D +MPT P V S L
Sbjct: 27 LLRWHFGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAKPGIVLVVSPLI 86
Query: 61 SK---------------------FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKK 99
FN + NQ+ A+ + + + + K
Sbjct: 87 ESLFLLVSLTMCFVSTLMLSCFFFNFSALMENQVMALKEKGIAAEYLSSTQATHVKNKIH 146
Query: 100 ICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPD 159
L + S++LLYV+PE +A +K FM KL+K++ G L IAIDE HC SSWGHDFRP
Sbjct: 147 EDLDSGKPSVRLLYVTPELIA-TKGFMLKLRKLHSRGLLNLIAIDEAHCISSWGHDFRPS 205
Query: 160 YQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKP 219
Y+ LS L+ DVP+L LTATA KV DV L +++ +V+K+ FNRPN+FYEVR
Sbjct: 206 YRQLSTLRDSLADVPVLALTATAAPKVQKDVIDSLNLQNPLVLKSSFNRPNIFYEVRY-- 263
Query: 220 AAQKDCLD----ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES 275
KD LD +L +L+ + N IIY C+DL L + G+ SAYHA L S
Sbjct: 264 ---KDLLDNAYTDLGNLL-KSCGNICAIIYCLERTTCDDLSVHLSSIGISSSAYHAGLNS 319
Query: 276 NV------------------SIAFG----LGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+ ++AFG +GIDK +VR V H + KSME+FYQ S G
Sbjct: 320 KLRSTVLDDWLSSKKQIIVATVAFGSMGHVGIDKKDVRMVCHFNIPKSMESFYQESGRAG 379
Query: 314 LGKHSFRS 321
+ RS
Sbjct: 380 RDQLPSRS 387
>gi|123494887|ref|XP_001326616.1| ATP-dependent DNA helicase, RecQ family protein [Trichomonas
vaginalis G3]
gi|121909533|gb|EAY14393.1| ATP-dependent DNA helicase, RecQ family protein [Trichomonas
vaginalis G3]
Length = 1447
Score = 176 bits (447), Expect = 1e-41, Method: Composition-based stats.
Identities = 107/328 (32%), Positives = 165/328 (50%), Gaps = 35/328 (10%)
Query: 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVL 59
++ V K F + FR Q AI AL +D ++MPT S V V+
Sbjct: 353 KINEVNKKVFKHSHFRGRQRDAIAAALNGEDVFVLMPTGGGKSLCYQLPGFIQMGVTIVI 412
Query: 60 KSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKL 119
+L + L + + DA+ +I + L+ L+++PEK+
Sbjct: 413 SPLISLIQDQVRSLTELGL-----DAMAYGQETTAADYNEIVRKINNGRLRFLFMTPEKI 467
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
+ +Y+ L R ID+ HC S WGHDFRPDY L +LKTM+PD+PI+ LT
Sbjct: 468 MMGSINTRFIGSIYEKKRLTRFVIDKAHCVSQWGHDFRPDYTQLGVLKTMYPDIPIMALT 527
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATAT V D++++L I +C V K+ FNRPN+FYEV K KD + + + + + N
Sbjct: 528 ATATDAVQRDIKEILNIRNCHVFKSSFNRPNIFYEVIQKEENSKD--EMIRWIKAHGYEN 585
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAF 281
+GII+ + E +L + + +G + YH K+E+ ++AF
Sbjct: 586 STGIIFCMTTPETVNLSQYMNTKGFNTAYYHGKMENADRKKVQEMWMNNQIRVIVATLAF 645
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQVS 309
G+GIDKP+VR+VIH + +S+E +YQ S
Sbjct: 646 GMGIDKPDVRYVIHMTMPRSLEAYYQES 673
>gi|391333104|ref|XP_003740962.1| PREDICTED: Bloom syndrome protein-like [Metaseiulus occidentalis]
Length = 1216
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 111/317 (35%), Positives = 151/317 (47%), Gaps = 68/317 (21%)
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTG------------------------------ 92
F LT+FR NQ AIN ALL D ++MPTG
Sbjct: 566 FGLTEFRHNQKQAINAALLNNDCFVLMPTGGGKSLCYQLPAICSKGVTVVVSPLKSLIYD 625
Query: 93 -----KLLKKKKICLMTESSS-------------LKLLYVSPEKLAKSKSFMTKLQKMYK 134
K + +M+E S LKLLYV+PEKLA S +K+++
Sbjct: 626 QVTKLKSMGIPATAMMSEVSDREVYEDLRRAEPLLKLLYVTPEKLAASNLLKNTFEKLHR 685
Query: 135 AGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKML 194
LAR IDE HC S WGHDFR DY L L+ FP VPI+ LTATA+ V D+ K L
Sbjct: 686 RNQLARFVIDEAHCVSQWGHDFRVDYHKLGQLRQTFPGVPIMALTATASPSVRKDILKQL 745
Query: 195 QIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECED 254
+++ FNRPNL Y++ +K + + L+S ++ +SGI+Y S K+C+
Sbjct: 746 LMKEPKWFLQSFNRPNLRYQI-VK-YFSGSPVTHIIKLISNKYFEKSGIVYCLSRKDCDQ 803
Query: 255 LREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDKPNVRFVIHH 296
+L + G+ +YHA + +IAFG+GIDK NVRFV H
Sbjct: 804 TAAKLESAGISAVSYHAGMNDAERSSIQDMWINGRKHVVCATIAFGMGIDKANVRFVFHT 863
Query: 297 CLSKSMENFYQVSIAFG 313
L KS+E +YQ + G
Sbjct: 864 GLPKSVEGYYQETGRAG 880
>gi|423316589|ref|ZP_17294494.1| ATP-dependent DNA helicase RecQ [Bergeyella zoohelcum ATCC 43767]
gi|405583639|gb|EKB57579.1| ATP-dependent DNA helicase RecQ [Bergeyella zoohelcum ATCC 43767]
Length = 733
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/323 (35%), Positives = 165/323 (51%), Gaps = 44/323 (13%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFN 64
LK F + F+ Q I+ L KD ++MPT S + V+
Sbjct: 12 LKKYFGFSTFKGRQEEVISSLLEGKDVFVLMPTGGGKSLCYQLPALLLEGTAIVVSP--- 68
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKL--LKKKKICLMTESSSLKLLYVSPEKLAKS 122
L NQ+ A+N L +D + + L + +++ E KLLYV+PE L K
Sbjct: 69 LIALMKNQVDAVN-GLSNEDGVAHVLNSSLNRTQTQQVFDDIEKGKTKLLYVAPESLIKD 127
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+ K+ ++ +AIDE HC S WGHDFRP+Y+ L + DVPI+ LTATA
Sbjct: 128 E-----YSDFLKSVKISFVAIDEAHCISEWGHDFRPEYRNLKNIIEKIADVPIIALTATA 182
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSG 242
T KV D+QK L + D V K+ FNRPNL+YEVR K K E+ +++R + +SG
Sbjct: 183 TPKVQDDIQKTLGMSDAKVYKSSFNRPNLYYEVRPKINVDK----EIVKFINQR-KGKSG 237
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 284
IIY S K+ E+ + L+ G+ YHA L+ +IAFG+G
Sbjct: 238 IIYCLSRKKVEEFAQLLQVNGINALPYHAGLDQKTRVANQDKFLMEECDVIVATIAFGMG 297
Query: 285 IDKPNVRFVIHHCLSKSMENFYQ 307
IDKP+VRFVIH+ KS+E++YQ
Sbjct: 298 IDKPDVRFVIHYDFPKSLESYYQ 320
>gi|261870796|gb|ACY02256.1| helicase [Heliconius pachinus]
Length = 302
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/163 (52%), Positives = 111/163 (68%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++ ILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 1 MFPNISILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 60
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+ +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 61 LEKLLKYRYXGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 120
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 121 GYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 163
>gi|392969325|ref|ZP_10334740.1| ATP-dependent DNA helicase RecQ [Fibrisoma limi BUZ 3]
gi|387841519|emb|CCH56798.1| ATP-dependent DNA helicase RecQ [Fibrisoma limi BUZ 3]
Length = 736
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 115/325 (35%), Positives = 170/325 (52%), Gaps = 43/325 (13%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSDRVRSVLK 60
++ LK F + FR +Q A I+ L ++ +IMPT SD V+
Sbjct: 12 LKERLKEIFGYSQFRGDQEAIIHSILAGRNTFVIMPTGAGKSLCYQLPAIVSDGTAIVIS 71
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
L + +QL A I +A + T + K+ T S SLKLLY++PE L
Sbjct: 72 PLIALMKNQVDQLNAFGI-----NAQFLNSTLSKAEMNKVKKDTLSGSLKLLYIAPESLT 126
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
K ++ K ++ +AIDE HC S WGHDFRP+Y+ + + ++P++ LTA
Sbjct: 127 KEENL-----DFLKKANISFVAIDEAHCISEWGHDFRPEYRKIRGIVDNIGNLPVIALTA 181
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TAT KV D+QK LQ+ED + K+ FNR NL+YE++ K A+K + + ++ + +
Sbjct: 182 TATPKVQQDIQKNLQMEDANLYKSSFNRKNLYYEIKPKIDAKKQLIKYV-----KQNKGK 236
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKL---------------ESNV---SIAFG 282
SGI+Y S K ED+ E L ++ YHA L E +V +IAFG
Sbjct: 237 SGIVYCLSRKTVEDIAELLNVNDIKALPYHAGLDPLTRMNNQDAFLNEEVDVIVATIAFG 296
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GIDKP+VRFVIH+ KS+E +YQ
Sbjct: 297 MGIDKPDVRFVIHYDAPKSLEGYYQ 321
>gi|452823697|gb|EME30705.1| ATP-dependent DNA helicase RecQ [Galdieria sulphuraria]
Length = 1210
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/334 (32%), Positives = 165/334 (49%), Gaps = 73/334 (21%)
Query: 33 NIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG 92
NI +++ D + ++PW+ +++ F FRPNQL ++N L +D ++MPTG
Sbjct: 363 NIPIVRNDYNLQWTGEFPWTYQLKKDNYIYFGNVSFRPNQLESMNAILSNRDVFVLMPTG 422
Query: 93 -----------------KLLKKKKICLMTESSS--------------------------- 108
++ I L+T+ S
Sbjct: 423 GGKSLCYQLPALWGPGVTIVVSPLISLITDQVSQLHEKGIFAAALTASTSAQVRKSIFDD 482
Query: 109 -------LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQ 161
L+LLYV+PE+++KS+ F L ++Y LAR IDE HC S WGHDFRPDY
Sbjct: 483 LRATFPRLRLLYVTPERISKSQMFHKFLNQLYGRKLLARFVIDEAHCVSQWGHDFRPDYT 542
Query: 162 YLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAA 221
L +LK FPD+PI+ LTATAT +V D++ L I + V + FNR NL Y VR K
Sbjct: 543 QLKLLKREFPDIPIMALTATATVEVREDIKVQLGIPNSVTFQQSFNRSNLTYCVREK--- 599
Query: 222 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN---- 276
+K+ + E+A+ + R+ ++ GIIY S ++CE L + L + + + YHA L
Sbjct: 600 KKNSIQEIAEEIRERYVHECGIIYCLSQRDCEMLADTLYHEYDILAAPYHAGLGDERRQL 659
Query: 277 --------------VSIAFGLGIDKPNVRFVIHH 296
++AFG+GI+K +VR+V H+
Sbjct: 660 THEDWMSGRVHVICATVAFGMGINKGDVRYVYHN 693
>gi|271502372|ref|YP_003335398.1| ATP-dependent DNA helicase RecQ [Dickeya dadantii Ech586]
gi|270345927|gb|ACZ78692.1| ATP-dependent DNA helicase RecQ [Dickeya dadantii Ech586]
Length = 614
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/325 (34%), Positives = 170/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q IN A+ +D ++IMPT S D + V+
Sbjct: 20 QVLRETFGYQQFRPGQQDIINAAINGRDCLVIMPTGGGKSLCYQIPALVLDGLTLVVSPL 79
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A +A A + T +++ + LKLLY++PE+L+ +
Sbjct: 80 ISLMKDQVDQLQAYGVA-----AACLNSTQSREQQQAVFNACRRGELKLLYIAPERLS-T 133
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
F+ +L + IAIDE HC S WGHDFRP+Y+ L +K P +PI+ LTATA
Sbjct: 134 DGFLDQLVHWNTS----LIAIDEAHCISQWGHDFRPEYRALGQIKQQCPTLPIVALTATA 189
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L + D +V + F+RPN+ Y + + KP LD+L L R +
Sbjct: 190 DDTTRQDIARLLDLRDPLVNVSSFDRPNIRYTLVEKFKP------LDQLW-LFIHGQRGK 242
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGI+Y S + EDL L+NRGL V AYHA L+++ ++AFG
Sbjct: 243 SGIVYCNSRAKVEDLCARLQNRGLSVGAYHAGLDNDRRSQVQEAFLRDDLQVVVATVAFG 302
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 303 MGINKPNVRFVVHFDIPRNIESYYQ 327
>gi|406659948|ref|ZP_11068084.1| ATP-dependent DNA helicase recQ [Cecembia lonarensis LW9]
gi|405556351|gb|EKB51290.1| ATP-dependent DNA helicase recQ [Cecembia lonarensis LW9]
Length = 726
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 115/328 (35%), Positives = 172/328 (52%), Gaps = 46/328 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
V+ LK F + FR NQ ++ L K+ +IMPT S D V+
Sbjct: 5 VKEKLKKIFGFSQFRGNQEPIVDNILKGKNTFVIMPTGAGKSLCYQLPAVIQDGTAIVIS 64
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
L + +QL A I +A + T + K+ S KLLYV+PE L
Sbjct: 65 PLIALMKNQVDQLNAFGI-----NAHFLNSTLNKSETNKVKKEVLSGKTKLLYVAPESLT 119
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLT 179
K ++ + K L+ +AIDE HC S WGHDFRP+Y+ + SI+ + +PI+ LT
Sbjct: 120 KEENIL-----FLKDAKLSFVAIDEAHCISEWGHDFRPEYRKIKSIIAQVGESLPIIALT 174
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVR--IKPAAQKDCLDELADLMSRRF 237
ATAT KV D+Q+ L +E+ + K+ FNR NL+YEVR IK +K + + +
Sbjct: 175 ATATPKVQQDIQRNLHMEEADLYKSSFNRTNLYYEVRPKIKNETKKQIIKYI-----KSH 229
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SI 279
+ +SGIIY S K+ E++ + L+ G++ + YHA L+ +V +I
Sbjct: 230 KGKSGIIYCLSRKKVEEIADLLKVNGIKAAPYHAGLDQSVRIKNQDDFLNEEVDVIVATI 289
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
AFG+GIDKP+VR+VIH+ + KS+E +YQ
Sbjct: 290 AFGMGIDKPDVRYVIHYDVPKSLEGYYQ 317
>gi|443668675|ref|ZP_21134223.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa DIANCHI905]
gi|159029588|emb|CAO90247.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330750|gb|ELS45444.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa DIANCHI905]
Length = 701
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/329 (34%), Positives = 168/329 (51%), Gaps = 31/329 (9%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLT 66
D + VLK F FRPNQ I AL +D ++IMPT S ++ +++K +
Sbjct: 5 DSLEKVLKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 67 DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKI----CLMTESSSLKLLYVSPEKLAKS 122
L + L + I L K++ L+ + +KLLYV+PE+L S
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRDRESLILQ-GKIKLLYVAPERLL-S 122
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
SF+ L + LA +A+DE HC S WGHDFRP+Y+ + ++ FP VPIL LTATA
Sbjct: 123 PSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATA 182
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSG 242
T +V D+ + L + D + A FNRPNL+YEVR K + L + + + SG
Sbjct: 183 TQQVREDIIQQLGLRDASIHIASFNRPNLYYEVRAKTSKSYQQLYQYI-----KGKKGSG 237
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLG 284
I+Y S K + + E L+ G+ YHA + +IAFG+G
Sbjct: 238 IVYCISRKTVDQVAEHLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATIAFGMG 297
Query: 285 IDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
I+KP+VRFV+H+ L +++E +YQ S G
Sbjct: 298 INKPDVRFVVHYDLPRNLEGYYQESGRAG 326
>gi|124004539|ref|ZP_01689384.1| ATP-dependent DNA helicase RecQ [Microscilla marina ATCC 23134]
gi|123990111|gb|EAY29625.1| ATP-dependent DNA helicase RecQ [Microscilla marina ATCC 23134]
Length = 728
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 123/332 (37%), Positives = 172/332 (51%), Gaps = 57/332 (17%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDY-------------PWSDRVRS 57
++ LK F FR Q I L +K+ +IMPT P S V S
Sbjct: 9 LKEKLKEVFGYGQFRGAQQEIIKSILGEKNTFVIMPTGAGKSLCYQLPAIVSPGSAIVIS 68
Query: 58 VLKSKFNLTDFRPNQLAA--INIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVS 115
L L + +QL A IN L + G++ + KK L E +KLLYV+
Sbjct: 69 PL---IALMKNQVDQLNALGINAQFLNS----TLTKGEITRVKKDVLNGE---VKLLYVA 118
Query: 116 PEKLAKSKS--FMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
PE L K + F+ K Q ++ +AIDE HC S WGHDFRP+Y+ + + ++
Sbjct: 119 PESLTKESNVDFLKKAQ-------ISFVAIDEAHCISEWGHDFRPEYRKIRQIIDNLGNL 171
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
PI+ LTATAT KV D+Q+ LQ+ED V K+ FNRPNL+YEVR K +K + L
Sbjct: 172 PIIALTATATPKVQQDIQRNLQMEDASVFKSSFNRPNLYYEVRPKIHVKKQLIKYL---- 227
Query: 234 SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---------------- 277
+ + +SGIIY S K+ E++ E L+ ++ YHA L+S+V
Sbjct: 228 -KNKKGESGIIYCLSRKKVEEIYEFLKVNDIKALPYHAGLDSSVRMRNQDAFLNEDADII 286
Query: 278 --SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VR VIH+ KS+E +YQ
Sbjct: 287 VATIAFGMGIDKPDVRCVIHYDAPKSLEGYYQ 318
>gi|149276388|ref|ZP_01882532.1| putative ATP-dependent DNA helicase [Pedobacter sp. BAL39]
gi|149232908|gb|EDM38283.1| putative ATP-dependent DNA helicase [Pedobacter sp. BAL39]
Length = 729
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/324 (35%), Positives = 169/324 (52%), Gaps = 45/324 (13%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSDRVRSVLKSKFN 64
L++ F +F+ +Q + I L KK+ +IMPT S+ V+
Sbjct: 11 LQTFFGFDNFKGDQESIITNVLEKKNTFVIMPTGGGKSICYQLPALMSEGTAIVISPLIA 70
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE--SSSLKLLYVSPEKLAKS 122
L + +QL A D+I L K + + ++ S KLLYV+PE L K
Sbjct: 71 LMKNQVDQLRAFG----GSDSIAHFLNSSLNKAEITQVKSDLLSGQTKLLYVAPESLGKQ 126
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLTAT 181
+ + K+ K ++ +A+DE HC S WGHDFRP+Y+ + ++ + +PI+ LTAT
Sbjct: 127 DNI--EFLKLIK---ISFVAVDEAHCISEWGHDFRPEYRKIRQVISGLGVGIPIIALTAT 181
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQS 241
AT KV D+ K LQ+ D + K+ FNRPNLFYE+R K +D + E+ + +S
Sbjct: 182 ATPKVQQDIIKNLQMSDATLFKSSFNRPNLFYEIRPK----RDVIKEIIRYIKYN-TGKS 236
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGL 283
GIIY S K+ E++ E L G++ YHA LE V +IAFG+
Sbjct: 237 GIIYCLSRKKVEEVAESLNLNGIKALPYHAGLEPKVRADTQDKFLMEDVEVIVATIAFGM 296
Query: 284 GIDKPNVRFVIHHCLSKSMENFYQ 307
GIDKP+VRFVIHH + KSME +YQ
Sbjct: 297 GIDKPDVRFVIHHDIPKSMEGYYQ 320
>gi|356532786|ref|XP_003534951.1| PREDICTED: ATP-dependent DNA helicase Q-like 3-like [Glycine max]
Length = 732
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/336 (37%), Positives = 171/336 (50%), Gaps = 39/336 (11%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLT----- 66
+L+ F DFR QL AI L KD +MPT S ++ ++ K+ L
Sbjct: 29 LLRWHFGYPDFRDMQLDAIQAVLSGKDCFCLMPTGGGKSMCYQIPALAKAGIVLVVCPLI 88
Query: 67 DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFM 126
NQ+ A+ + + + T K L + S +LLYV+PE L + FM
Sbjct: 89 ALMENQVMALKEKGIAAEFLSSTKTTDAKVKIHEDLDSGKPSTRLLYVTPE-LITTPGFM 147
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186
TKL K+Y G L IAIDE HC SSWGHDFRP Y+ LS L++ PDVPIL LTATA KV
Sbjct: 148 TKLTKIYTRGLLNLIAIDEAHCISSWGHDFRPSYRKLSSLRSHLPDVPILALTATAVPKV 207
Query: 187 MLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE-LADLMS--RRFRNQSGI 243
DV + LQ+++ +++K+ FNRPN++YEVR KD LD+ ADL + + + I
Sbjct: 208 QKDVVESLQMQNPLMLKSSFNRPNIYYEVRY-----KDLLDDAYADLSNTLKSLGDVCAI 262
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGI 285
+Y C+DL L G+ +AYHA L + + ++AFG
Sbjct: 263 VYCLERSMCDDLSTNLSQNGISCAAYHAGLNNKMRTSVLDDWISSKIKVVVATVAFG--- 319
Query: 286 DKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRS 321
+VR V H + KSME FYQ S G + RS
Sbjct: 320 --KDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSRS 353
>gi|261870800|gb|ACY02258.1| helicase [Heliconius pachinus]
Length = 302
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/163 (52%), Positives = 111/163 (68%), Gaps = 18/163 (11%)
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
MFP++ ILGLTATAT V+ DVQKML I+ C+VIK+ FNRPNL+Y++ KP +Q+DCL
Sbjct: 1 MFPNIXILGLTATATAHVLSDVQKMLSIQGCLVIKSTFNRPNLYYKILEKPTSQEDCLSI 60
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------ 276
L L+ R+ +SGIIYT SIK+ ED+ L+ RGLRV YHA +E+
Sbjct: 61 LEKLLKYRYXGESGIIYTNSIKDSEDIANGLKKRGLRVGYYHATMEAKSRSDVHMKWHAK 120
Query: 277 ------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIHH +SKS+EN+YQ S G
Sbjct: 121 GYQAIVATVAFGMGIDKPDVRFVIHHTISKSIENYYQESGRAG 163
>gi|358410697|gb|AEU10083.1| ATP-dependent DNA helicase RecQ [Photobacterium damselae subsp.
piscicida]
Length = 613
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 119/342 (34%), Positives = 172/342 (50%), Gaps = 59/342 (17%)
Query: 2 LPNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--------- 52
L +YP + +++L+ F FR Q I AL D+++IMPT S
Sbjct: 6 LCDYPTLAQAQTLLEDVFGYQQFRDGQQDIITTALNHSDSLVIMPTGGGKSLCYQIPALL 65
Query: 53 -DRVRSVLKSKFNLTDFRPNQLAAINI------ALLKKDAIIIMPTGKLLKKKKICLMTE 105
D + V+ +L + +QL A I + L +D I + + E
Sbjct: 66 LDGLTLVISPLISLMKDQVDQLVANGIPAACIHSALTRDEI-----------ETVFSQLE 114
Query: 106 SSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSI 165
S LKLLYVSPE++ + F+ +LQ++ LA +A+DE HC S WGHDFRP+Y L
Sbjct: 115 SGELKLLYVSPERVLM-RDFIARLQQVK----LALLAVDEAHCISQWGHDFRPEYAELGQ 169
Query: 166 LKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQK 223
LK MF +P++ LTATA D+ L +E + F RPN+ Y + + KP +Q
Sbjct: 170 LKQMFAPLPVMALTATADETTRQDIISRLALEQPYIHLGSFERPNIRYTLLEKYKPLSQ- 228
Query: 224 DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------- 276
L LA + R Q GIIY S K E + E+L GLR +AYHA + N
Sbjct: 229 -LLSYLASV-----RGQCGIIYCNSRKRVEQICEKLCENGLRAAAYHAGMSVNDRAYVQE 282
Query: 277 -----------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KPNVRFVIHH + +++E++YQ
Sbjct: 283 AFQRDDIHIVVATVAFGMGINKPNVRFVIHHDIPRNIESYYQ 324
>gi|71028986|ref|XP_764136.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351090|gb|EAN31853.1| hypothetical protein TP04_0501 [Theileria parva]
Length = 1044
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 172/332 (51%), Gaps = 33/332 (9%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
N+P+S V + K F FR QL AIN L D ++M T + S +
Sbjct: 267 NFPFSKAVHDINKRVFKHNTFRGVQLPAINAVLQGNDCFVMMATGFGKSHCYQLPALLLN 326
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLY 113
V +L + + L A NI ++ + + + + + ++ S+ +L+
Sbjct: 327 GTVVVFSPLLSLVEDQMKSLKAKNINAETLNSKTTITEYRRISRYFMDNDSDFSNGSILF 386
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
++PEKL KSK + L++MY L IDE HC S WGH FR DY+ L LK +FP+V
Sbjct: 387 ITPEKLDKSKKVLDMLERMYSMNRLKLFVIDEAHCVSQWGHSFRKDYRKLCNLKPIFPNV 446
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
PIL +TATAT +V+ D+ +L ED V++K NRPNL+ EVR K L+E+ ++
Sbjct: 447 PILAMTATATPEVVEDITAVLGFEDHVLLKTTINRPNLWIEVREKYTGY---LEEIIKIL 503
Query: 234 SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK------LESN----------- 276
R + IIY + ++C+ L E+L + GL + YHAK LES
Sbjct: 504 --RLTSGCVIIYCLTTRDCDRLGEKLEHNGLYNAVYHAKMNMKDRLESQRLWNEGEVRIM 561
Query: 277 -VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GIDKPNVR ++H S+ ++YQ
Sbjct: 562 VATVAFGMGIDKPNVRLIMHTSAPFSLLSYYQ 593
>gi|408675008|ref|YP_006874756.1| ATP-dependent DNA helicase RecQ [Emticicia oligotrophica DSM 17448]
gi|387856632|gb|AFK04729.1| ATP-dependent DNA helicase RecQ [Emticicia oligotrophica DSM 17448]
Length = 715
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 167/319 (52%), Gaps = 33/319 (10%)
Query: 12 RSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSD--RVRSVLKSKFNLTDFR 69
VLK F FRP Q I + +KD +++MPT S +V +++ L
Sbjct: 4 EEVLKKYFGYDSFRPLQAEIIETIIAQKDCMVLMPTGGGKSICFQVPAMVMPGITLVISP 63
Query: 70 PNQLAAINIALLKKDAI---IIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFM 126
L + LK + I + T ++++ I ++ SLKLLY+SPEKL F
Sbjct: 64 LIALMQDQVQALKSNGIPAAFLNSTLSTIEQRTIEEDCKNGSLKLLYISPEKL-----FS 118
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186
K + +IAIDE HC S+WGHDFRP+Y L LK FP+VP++ LTATA
Sbjct: 119 NNYLGFIKTLNVNQIAIDESHCVSTWGHDFRPEYIQLKALKDTFPNVPMVALTATADRVT 178
Query: 187 MLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYT 246
D+ L I + ++ + F+RPNL +R+ P ++ L + + +++R NQSGIIY
Sbjct: 179 RKDILNQLGIPEALIFISSFDRPNL--NLRVLPG--RNRLKVIHEFIAKR-TNQSGIIYC 233
Query: 247 TSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKP 288
S K ED+ E LR G+R YHA L++ +IAFG+GIDK
Sbjct: 234 LSRKNTEDVAEGLRKLGIRAMHYHAGLDAQTRAEVQDAYIKDEIQVIVATIAFGMGIDKS 293
Query: 289 NVRFVIHHCLSKSMENFYQ 307
NVRFVIH+ L ++E+FYQ
Sbjct: 294 NVRFVIHYSLPSNVESFYQ 312
>gi|326800755|ref|YP_004318574.1| ATP-dependent DNA helicase RecQ [Sphingobacterium sp. 21]
gi|326551519|gb|ADZ79904.1| ATP-dependent DNA helicase RecQ [Sphingobacterium sp. 21]
Length = 729
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 170/325 (52%), Gaps = 47/325 (14%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSDRVRSVLKSKFN 64
L++ F F+ +Q A I L KKD +IMPT S+ V+
Sbjct: 11 LQNFFGFDTFKGDQEAIITNILQKKDTFVIMPTGGGKSICYQLPALMSEGTAVVISPLIA 70
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTES---SSLKLLYVSPEKLAK 121
L + +QL A A D+I L K +I + + KLLYV+PE LAK
Sbjct: 71 LMKNQVDQLRAFGGA----DSIAHFLNSSL-NKSEITRVKQDVLDGKTKLLYVAPESLAK 125
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLTA 180
+ + + K ++ +A+DE HC S WGHDFRP+Y+ + ++ + ++PI+ LTA
Sbjct: 126 TDNI-----EFLKLITVSFVAVDEAHCISEWGHDFRPEYRKIRQVINGIGENIPIIALTA 180
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TAT KV D++K LQ+ D + K+ FNRPNL+YEVR K K+ + E+ + ++
Sbjct: 181 TATPKVQSDIRKNLQMNDATLFKSSFNRPNLYYEVRPK----KNVVKEIVKFIKNN-PSK 235
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282
SGIIY S K+ E++ E L G+ YHA L++ +IAFG
Sbjct: 236 SGIIYCLSRKKVEEIAEVLNINGISALPYHAGLDAKTRAETQDKFLMEDVEVIVATIAFG 295
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GIDKP+VR+VIHH + KSME +YQ
Sbjct: 296 MGIDKPDVRYVIHHDIPKSMEGYYQ 320
>gi|255037353|ref|YP_003087974.1| ATP-dependent DNA helicase RecQ [Dyadobacter fermentans DSM 18053]
gi|254950109|gb|ACT94809.1| ATP-dependent DNA helicase RecQ [Dyadobacter fermentans DSM 18053]
Length = 737
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 175/332 (52%), Gaps = 51/332 (15%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSDRVRS 57
+D ++ LK F + FR +Q I LL K+ +IMPT SD +
Sbjct: 10 NDTLKGKLKEIFGYSQFRGDQEVIIQNILLGKNTFVIMPTGAGKSLCYQLPALVSDGLTI 69
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTES--SSLKLLYVS 115
V+ L + +QL A I +A + T L K + + T++ +LKLLY++
Sbjct: 70 VISPLIALMKNQVDQLTAFGI-----NAQFLNST--LTKAEMTRVKTDALDGTLKLLYIA 122
Query: 116 PEKLAKSKS--FMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
PE L K + F+ +++ ++ +AIDE HC S WGHDFRP+Y+ + + ++
Sbjct: 123 PESLTKEDNLDFLKRVK-------ISFVAIDEAHCISEWGHDFRPEYRRIHGIIENIGNL 175
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
PI+ LTATAT KV D++K LQ+E+ K+ FNR NL+YE+R K +K + +
Sbjct: 176 PIIALTATATPKVQQDIRKNLQMEEAETFKSSFNRKNLYYEIRPKKDVKKQLIRYI---- 231
Query: 234 SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---------------- 277
R + +SGI+Y S K E++ E L +R YHA L++N
Sbjct: 232 -RNNKGKSGIVYCLSRKTVEEVAELLNVNDVRALPYHAGLDANTRMANQDAFLNEECDVI 290
Query: 278 --SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIH+ + KS+E +YQ
Sbjct: 291 VATIAFGMGIDKPDVRFVIHYDVPKSLEGYYQ 322
>gi|383192105|ref|YP_005202233.1| ATP-dependent DNA helicase RecQ [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
gi|371590363|gb|AEX54093.1| ATP-dependent DNA helicase RecQ [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
Length = 610
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/325 (32%), Positives = 172/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q IN A+ +D +++MPT S D + V+
Sbjct: 15 QVLRDTFGYQQFRPGQQTIINTAISGRDCLVVMPTGGGKSLCYQIPALVMDGLTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A + +A + T ++ + + +K+LY++PE+L
Sbjct: 75 ISLMKDQVDQLMAAGV-----EAGCLNSTQTREQQLDVMAGCRAGRIKMLYIAPERLMMG 129
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
F+ +LQ+ A +A+DE HC S WGHDFRP+Y+ L LK +P +P++ LTATA
Sbjct: 130 -DFLEQLQQWNPA----MLAVDEAHCISQWGHDFRPEYRALGQLKLRYPQLPVIALTATA 184
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L++ D ++ + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 185 DEATRNDIVRLLELNDPLIQVSSFDRPNIRYTLVEKFKP------LDQLIRFVQDQ-RGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282
SGIIY S + ED L++RGL V AYHA L+++ ++AFG
Sbjct: 238 SGIIYCNSRAKVEDTAARLQSRGLSVGAYHAGLDNDTRARVQEGFQRDDLQIVVATVAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 298 MGINKPNVRFVVHFDIPRTIESYYQ 322
>gi|290490724|dbj|BAI79322.1| BLM helicase [Gallus gallus]
Length = 1380
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 119/337 (35%), Positives = 159/337 (47%), Gaps = 76/337 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL----------- 95
+ S+ + + KF L FR NQL AIN ALL +D I+MPT GK L
Sbjct: 617 FSHSEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAG 676
Query: 96 --------------------------------------KKKKICLMTESSSLKLLYVSPE 117
K + L + +KLLYV+PE
Sbjct: 677 VTVVISPLRSLIIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPE 736
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
K+ S ++ L+ +Y LAR IDE HC S WGHDFR DY+ L++L+ F VP++
Sbjct: 737 KVCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMA 796
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQ--KDCLDELADLMSR 235
LTATA +V D+Q L++ V FNR NL Y+V K + DCL + + +
Sbjct: 797 LTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDVLPKKPKKVAMDCL----EWIKK 852
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL-ESN------------------ 276
+ SGIIY S EC+ L+ GL AYHA L +SN
Sbjct: 853 YHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVIC 912
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VR+VIH L KS+E +YQ S G
Sbjct: 913 ATIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAG 949
>gi|167751826|ref|ZP_02423953.1| hypothetical protein ALIPUT_00068 [Alistipes putredinis DSM 17216]
gi|167660067|gb|EDS04197.1| ATP-dependent DNA helicase RecQ [Alistipes putredinis DSM 17216]
Length = 730
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 165/330 (50%), Gaps = 50/330 (15%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+R LK F + F+ NQ A I L KD ++MPT S D V V+
Sbjct: 9 LREKLKEYFGFSSFKGNQEAVIRNVLSGKDTFVLMPTGGGKSLCYQLPALLMDGVAIVIS 68
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE---SSSLKLLYVSPE 117
L NQ+ A+ DA I L K + + KLLY +PE
Sbjct: 69 P---LIALMKNQVDAMRT--YSNDAGIAHFLNSSLNKSAVAQVRNDVLEGRTKLLYFAPE 123
Query: 118 KLAKSK--SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
L K +F+ K++ ++ AIDE HC S WGHDFRP+Y+ + + P+
Sbjct: 124 SLTKEDNVAFLRKVK-------VSFYAIDEAHCISEWGHDFRPEYRRIRPIINEIGTAPL 176
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATAT KV +D+QK L + D V K+ FNRPNL+YE+R K ++ + + +
Sbjct: 177 IALTATATPKVQMDIQKNLGMSDASVFKSSFNRPNLYYEIRPKHDVDREIIRYI-----K 231
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------ 277
+ +SGIIY S K+ E+L E L G+R AYHA +++
Sbjct: 232 QHEGKSGIIYCLSRKKVEELTELLVANGIRALAYHAGMDAQTRAANQDDFLMERADVIVA 291
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VR+VIH+ + KS+E +YQ
Sbjct: 292 TIAFGMGIDKPDVRYVIHYDIPKSLEGYYQ 321
>gi|150025301|ref|YP_001296127.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium psychrophilum
JIP02/86]
gi|149771842|emb|CAL43316.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium psychrophilum
JIP02/86]
Length = 731
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 120/321 (37%), Positives = 174/321 (54%), Gaps = 39/321 (12%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-----LTD 67
LK F F+ Q I + K ++ +IMPT S ++ ++++ L
Sbjct: 12 LKKYFGFNQFKGLQEQVIKSIVAKHNSFVIMPTGGGKSLCYQLPALMQGGTAIVVSPLIA 71
Query: 68 FRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE--SSSL-KLLYVSPEKLAKSKS 124
NQ+ AI L +A I L K +I + + SS L KLLYV+PE L K +
Sbjct: 72 LMKNQVDAIR--SLSSEAGIAHVLNSSLTKTEIAQVKKDISSGLTKLLYVAPESLTKEE- 128
Query: 125 FMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATT 184
++T LQK ++ +AIDE HC S WGHDFRP+Y+ L + + DVPI+GLTATAT
Sbjct: 129 YVTFLQKE----KISFVAIDEAHCISEWGHDFRPEYRNLKNIIKLLGDVPIIGLTATATP 184
Query: 185 KVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGII 244
KV D+ K L + + KA FNRPNL+YEVR K K+ ++ + ++ + +SGII
Sbjct: 185 KVQEDILKNLDMANANTFKASFNRPNLYYEVRTKT---KNVESDIIRFI-KQHKGKSGII 240
Query: 245 YTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGID 286
Y S K+ E + + L+ G+ YHA L++ +IAFG+GID
Sbjct: 241 YCLSRKKVEAIAQVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGID 300
Query: 287 KPNVRFVIHHCLSKSMENFYQ 307
KP+VRFVIHH + KS+E++YQ
Sbjct: 301 KPDVRFVIHHDIPKSLESYYQ 321
>gi|392558417|gb|EIW51605.1| ATP-dependent DNA helicase [Trametes versicolor FP-101664 SS1]
Length = 717
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 117/347 (33%), Positives = 174/347 (50%), Gaps = 51/347 (14%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDFRP-- 70
+KS F FR Q N ++ +D + IMPT S ++ +++ S L P
Sbjct: 1 MKSVFGFDSFRLCQEGICNASMDGRDVVGIMPTGGGKSLGYQLPALMVSGCTLV-ISPLL 59
Query: 71 ----NQLAAINIALLKKDAIIIMPTGKLLKKKKI--------CLMTESSSLKLLYVSPEK 118
+Q+ +N A + DA+++ ++ I + + +KL YV+PEK
Sbjct: 60 ALIRDQIMHLNEAGV--DAVMLTSATSQAEQNNIYSRLREMASGASHAPEIKLCYVTPEK 117
Query: 119 LAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGL 178
+AKSK+F + L+K+Y+ LAR IDE HC S GHDFRPDYQ LS L+ +FP VPIL L
Sbjct: 118 IAKSKTFTSALEKLYRVNKLARFVIDEAHCVSQQGHDFRPDYQRLSSLRQLFPSVPILAL 177
Query: 179 TATATTKVMLDVQKMLQI-----------EDCVVIKAPFNRPNLFYEVRIKPAAQKDCLD 227
+AT V+ D+ K LQ+ + V+ AP R NL Y V KP++ + +
Sbjct: 178 SATCPPIVLRDLLKTLQMGAPIIGTAATTKGTVLFSAPLYRKNLHYSVLPKPSSAQSSIR 237
Query: 228 ELADLMSRRFRNQSGIIYTTSIKECEDLREEL---RNRGLRVSAYHAKLESNV------- 277
+ D + +GI+Y S K+ E + E L R + YHA + +V
Sbjct: 238 AMCDYILEHHPKDTGIVYCLSKKDAEHVAEALSEESGRKILTGVYHADVADSVKESLHKK 297
Query: 278 -----------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFGLGIDK +VR+V+HH + KS++ FYQ S G
Sbjct: 298 WRSGQVKVVCATIAFGLGIDKGDVRYVLHHTVRKSLDGFYQESGRAG 344
>gi|146298045|ref|YP_001192636.1| ATP-dependent DNA helicase RecQ [Flavobacterium johnsoniae UW101]
gi|146152463|gb|ABQ03317.1| ATP-dependent DNA helicase, RecQ family [Flavobacterium johnsoniae
UW101]
Length = 731
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 119/330 (36%), Positives = 170/330 (51%), Gaps = 47/330 (14%)
Query: 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVL 59
+ LK F + F+ Q I L K + +IMPT S D V+
Sbjct: 7 EIHKELKKYFGFSQFKGLQEQVITSILGKTNTFVIMPTGGGKSLCYQLPALIQDGTAIVV 66
Query: 60 KSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS--LKLLYVSPE 117
L NQ+ AI +L ++ I + L K + + + SS KLLYV+PE
Sbjct: 67 SP---LIALMKNQVDAIR-SLSSENGIAHVLNSSLTKTEIAQVKKDISSGLTKLLYVAPE 122
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
L K + ++ LQ + ++ +AIDE HC S WGHDFRP+Y+ L + VPI+G
Sbjct: 123 SLTKEE-YVAFLQSV----PISFVAIDEAHCISEWGHDFRPEYRNLRTIIKQLGKVPIIG 177
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS--R 235
LTATAT KV D+ K L + D KA FNRPNL+YEVR K + + +D++ +
Sbjct: 178 LTATATPKVQEDILKNLDMSDANTFKASFNRPNLYYEVRTKTKSIE------SDIIRFIK 231
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------ 277
+ + +SGIIY S K+ E + E L+ G+ YHA L++
Sbjct: 232 QHKGKSGIIYCLSRKKVESIAEVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVA 291
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 292 TIAFGMGIDKPDVRFVIHHDIPKSLESYYQ 321
>gi|347536771|ref|YP_004844196.1| ATP-dependent DNA helicase RecQ [Flavobacterium branchiophilum
FL-15]
gi|345529929|emb|CCB69959.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium branchiophilum
FL-15]
Length = 731
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 165/339 (48%), Gaps = 75/339 (22%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------------------- 52
LK F + F+ Q I L K + +IMPT S
Sbjct: 12 LKKYFGFSQFKGLQEQVIRSLLAKNNTFVIMPTGGGKSLCYQLPALMLEGTAIVVSPLIA 71
Query: 53 ------DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTES 106
D +RS L S+ + + L IA +K D + +
Sbjct: 72 LMKNQVDAIRS-LSSEVGVAHVLNSSLNKTEIAQVKSDIV-------------------A 111
Query: 107 SSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
KLLYV+PE L K + +++ LQ + L+ +AIDE HC S WGHDFRP+Y+ L +
Sbjct: 112 GKTKLLYVAPESLTKEE-YVSFLQTV----PLSFVAIDEAHCISEWGHDFRPEYRNLKNI 166
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
DVPI+GLTATAT KV D+ K L + D KA FNRPNLFYEVR K K+
Sbjct: 167 IKQLSDVPIIGLTATATPKVQEDILKNLDMPDAKTFKASFNRPNLFYEVRTKT---KNIE 223
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------- 277
++ + ++ + +SGIIY S K+ E + E L+ G+ YHA L++
Sbjct: 224 SDIIRFI-KQNKGKSGIIYCLSRKKVESIAEVLKVNGISAVPYHAGLDAKTRAKHQDMFL 282
Query: 278 ---------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 283 MEDVEVVVATIAFGMGIDKPDVRFVIHHDIPKSLESYYQ 321
>gi|425441134|ref|ZP_18821420.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9717]
gi|389718248|emb|CCH97777.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9717]
Length = 703
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 175/330 (53%), Gaps = 33/330 (10%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-- 64
D + VLK F FRPNQ I AL +D ++IMPT S ++ +++K
Sbjct: 5 DSLEKVLKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 65 ---LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAK 121
L +Q+ A+ + + K +++++ ++ +KLLYV+PE+L
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLIL--QGKIKLLYVAPERLL- 121
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
S SF+ L + LA +A+DE HC S WGHDFRP+Y+ + ++ FP VPIL LTAT
Sbjct: 122 SPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTAT 181
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQS 241
AT +V D+ + L + D + A FNRPNL+YEV+ K + L + + + +
Sbjct: 182 ATQQVREDIIQQLGLRDTSIHIASFNRPNLYYEVQPKTSKSYQQLYQYI-----KGQKGA 236
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLE----SN--------------VSIAFGL 283
GI+Y S K + + E+L+ G+ YHA +E SN +IAFG+
Sbjct: 237 GIVYCISRKTVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRDDVQIMVATIAFGM 296
Query: 284 GIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
GI+KP+VRFVIH+ L +++E +YQ S G
Sbjct: 297 GINKPDVRFVIHYDLPRNLEGYYQESGRAG 326
>gi|375014002|ref|YP_004990990.1| ATP-dependent DNA helicase RecQ [Owenweeksia hongkongensis DSM
17368]
gi|359349926|gb|AEV34345.1| ATP-dependent DNA helicase RecQ [Owenweeksia hongkongensis DSM
17368]
Length = 731
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/326 (35%), Positives = 169/326 (51%), Gaps = 41/326 (12%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN---- 64
V LK F F+ NQ A IN + D +IMPT S ++ ++++S
Sbjct: 6 VHDELKKYFGFDQFKGNQEAVINNVIAGNDTFVIMPTGGGKSMCYQLPALMQSGTAIVVS 65
Query: 65 -LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE--SSSLKLLYVSPEKLAK 121
L NQ+ +I ++ + + L K + + + + KLLYV+PE L K
Sbjct: 66 PLIALMKNQVDSIR-GFSEEHGVAHVLNSSLTKGQTEQVKEDIRNGITKLLYVAPESLTK 124
Query: 122 SKSFMTKLQKMYKAGC-LARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
++ + GC ++ AIDE HC S WGHDFRP+Y+ L + T P++ LTA
Sbjct: 125 EENIE------FLQGCDISFYAIDEAHCISEWGHDFRPEYRNLKNIITAIGRKPVIALTA 178
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPA-AQKDCLDELADLMSRRFRN 239
TAT KV D+QK L ++D V KA FNRPNL+YEVR K +D + + M +
Sbjct: 179 TATPKVQGDIQKNLGMDDAQVFKASFNRPNLYYEVRPKTEHVDRDIIKFIKGHMGK---- 234
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAF 281
SGIIY S K+ E+L E L+ G+ YHA L++ +IAF
Sbjct: 235 -SGIIYCLSRKKVEELAETLQVNGINALPYHAGLDAKSRVRHQDAFLMEEADVIVATIAF 293
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GIDKP+VRFV+H+ + KS+E++YQ
Sbjct: 294 GMGIDKPDVRFVMHYDMPKSLESYYQ 319
>gi|324502420|gb|ADY41066.1| Bloom syndrome protein [Ascaris suum]
Length = 1090
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 158/332 (47%), Gaps = 74/332 (22%)
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG-------------------- 92
D++ VLK KF FR Q AI ALL D ++MPTG
Sbjct: 303 DQMYDVLKKKFGFNQFRHRQKTAIIAALLGYDCFVLMPTGAGKSLCYQLPSVLSGGVTVV 362
Query: 93 -----KLLKKKKI---------CLMTESSS-----------------LKLLYVSPEKLAK 121
L++ +K C +T S + LLYV+PEK+A
Sbjct: 363 ISPLKSLIEDQKTKMKQLEINCCALTSDLSQAESDRIYAALSETNPKINLLYVTPEKIAA 422
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF--PDVPILGLT 179
S+ +++ G L R IDE HC S WGHDFRPDY L L+ ++ P VPI+ LT
Sbjct: 423 SEKLNNVFASLHRRGLLTRFVIDEAHCISQWGHDFRPDYTKLHSLRKVYINPRVPIMALT 482
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATAT K+ D + L + + + + F R NL Y+V K + L + + M +
Sbjct: 483 ATATPKIATDARDHLSMPNSKLFISSFVRSNLKYDVIAK---RPKSLSAVMERMKALYPG 539
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL----ESNV--------------SIAF 281
+SGI+Y S KECE + + L+N+G+ YHA L NV +IAF
Sbjct: 540 KSGIVYCLSRKECETVSKSLQNQGISADVYHAGLPDKQRQNVQAKWINNHINVICATIAF 599
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
G+GIDKP+VRFVIH + KS+E +YQ + G
Sbjct: 600 GMGIDKPDVRFVIHFSMPKSIEGYYQETGRAG 631
>gi|449446630|ref|XP_004141074.1| PREDICTED: ATP-dependent DNA helicase Q-like 3-like [Cucumis
sativus]
gi|449488107|ref|XP_004157941.1| PREDICTED: ATP-dependent DNA helicase Q-like 3-like [Cucumis
sativus]
Length = 729
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/325 (36%), Positives = 166/325 (51%), Gaps = 28/325 (8%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLT----- 66
+L+ F ++FR QL I L KD +MPT S ++ ++ + L
Sbjct: 27 LLRWHFGHSEFRGKQLETIEAVLSGKDCFCLMPTGGGKSVCYQIPALASNGMVLVVCPLI 86
Query: 67 DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFM 126
NQ+ A+ + + + + + K L + +L+LLYV+PE +A S FM
Sbjct: 87 ALMENQVMALKEKGISAEYLSSTQSTQAKNKIHEDLNSSKPTLRLLYVTPELIATS-GFM 145
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186
KL K+Y G L IAIDE HC S+WGHDFRP Y+ LS L++ P++PIL LTATA KV
Sbjct: 146 AKLMKIYSRGLLNLIAIDEAHCISTWGHDFRPSYRKLSSLRSQLPNIPILALTATAVPKV 205
Query: 187 MLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYT 246
DV L +E+ +V+K+ FNRPN++YEVR K D L S + IIY
Sbjct: 206 QKDVIISLGLENPLVLKSSFNRPNIYYEVRYKDLLDDPLADLCNQLKSS--GDVCAIIYC 263
Query: 247 TSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKP 288
C+ L L G+ +AYHA L++ + ++AFG+GID+
Sbjct: 264 LERAMCDQLSVYLAKYGISCAAYHAGLKNELRKSVLEDWISSRIQVVVATVAFGMGIDRK 323
Query: 289 NVRFVIHHCLSKSMENFYQVSIAFG 313
+VR V H + KSME FYQ S G
Sbjct: 324 DVRVVCHFNIPKSMEAFYQESGRAG 348
>gi|399026913|ref|ZP_10728551.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. CF136]
gi|398075677|gb|EJL66783.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. CF136]
Length = 731
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 119/328 (36%), Positives = 170/328 (51%), Gaps = 43/328 (13%)
Query: 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVL 59
+ LK F + F+ Q I L KK+ +IMPT S D V+
Sbjct: 7 EIHKELKKYFGFSQFKGLQEQVITSILNKKNTFVIMPTGGGKSLCYQLPALIQDGTAIVV 66
Query: 60 KSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS--LKLLYVSPE 117
L NQ+ AI +L ++ I + L K + + + +S KLLYV+PE
Sbjct: 67 SP---LIALMKNQVDAIR-SLSSENGIAHVLNSSLTKTEIAQVKKDITSGLTKLLYVAPE 122
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
L K + ++ LQ + ++ +AIDE HC S WGHDFRP+Y+ L + VPI+G
Sbjct: 123 SLTKEE-YVAFLQSV----PISFVAIDEAHCISEWGHDFRPEYRNLKNIIKQLGSVPIIG 177
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT KV D+ K L + D KA FNRPNL+YEVR K K+ ++ + ++
Sbjct: 178 LTATATPKVQEDILKNLDMSDANTFKASFNRPNLYYEVRTKT---KNIESDIIRFI-KQH 233
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SI 279
+ +SGIIY S K+ E + E L+ G+ YHA L++ +I
Sbjct: 234 KGKSGIIYCLSRKKVETIAEVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATI 293
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
AFG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 294 AFGMGIDKPDVRFVIHHDIPKSLESYYQ 321
>gi|294944133|ref|XP_002784103.1| ATP-dependent DNA helicase Q1, putative [Perkinsus marinus ATCC
50983]
gi|239897137|gb|EER15899.1| ATP-dependent DNA helicase Q1, putative [Perkinsus marinus ATCC
50983]
Length = 369
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/226 (42%), Positives = 129/226 (57%), Gaps = 20/226 (8%)
Query: 104 TESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL 163
++ SSL ++V+PEKLA+S L+++ K G LAR IDE HC S WGHDFR Y L
Sbjct: 74 SQRSSLLPVFVTPEKLAESTRVANILKRLRKNGQLARFIIDEAHCVSQWGHDFRSSYLKL 133
Query: 164 SILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQ- 222
LK F DVPI LTATAT + DVQ L++ + V IK NR NL Y V K ++
Sbjct: 134 KNLKAAFDDVPITALTATATPGIAQDVQAQLRMTNTVFIKGGINRANLAYRVMKKSRSRV 193
Query: 223 -KDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----- 276
D L + D+ SGI+Y + ECE + + L+N G+ YHA ++++
Sbjct: 194 LNDILQLIKDMNGEVQGKASGIVYCGTKVECETVADGLKNLGVTAGFYHASMDTDDRTDI 253
Query: 277 -------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
+IAFG+GI+KP+VRFVIH+ LSK+ME +YQ S
Sbjct: 254 QRRWMADKIQVIVATIAFGMGINKPDVRFVIHYGLSKTMEGYYQES 299
>gi|20093292|ref|NP_619367.1| DNA helicase RecQ [Methanosarcina acetivorans C2A]
gi|19918649|gb|AAM07847.1| DNA helicase RecQ [Methanosarcina acetivorans C2A]
Length = 909
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 122/334 (36%), Positives = 169/334 (50%), Gaps = 49/334 (14%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRS 57
S R+ SVL+ F T FRP Q I L +KD ++MPT S D V
Sbjct: 22 SARMHSVLRQYFGYTAFRPLQEEIIRDVLDRKDVFVLMPTGGGKSICYQLPSLLLDGVTV 81
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPE 117
V+ +L + + L A IA A + T + + + + LK+LY++PE
Sbjct: 82 VVSPLISLMKDQVDGLEANGIA-----AACMNSTQSAREIRDVKSAFLENRLKILYIAPE 136
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL---KTMFPDVP 174
+L M K G ++ AIDE HC S WGHDFRP+Y+ L +L KT FPDVP
Sbjct: 137 RL-----MMPGTITFLKKGKISLFAIDEAHCISEWGHDFRPEYRKLKLLRDPKTGFPDVP 191
Query: 175 ILGLTATATTKVMLDVQKMLQIE---DCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
++ LTATAT +V D+ L ++ + + A FNR NL+YEVR K KD E+ D
Sbjct: 192 VIALTATATGRVRKDIIVQLGLDLDPEKGLYVASFNRSNLYYEVRPK----KDTFSEITD 247
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--------------- 276
+ R R ++GIIY S E L ++L G R YHA L +
Sbjct: 248 YL-LRHRGEAGIIYCQSRNNVETLTKKLNLAGFRALPYHAGLSDSERSRNQEMFIKDDVD 306
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDK NVRFVIH+ L +++E++YQ
Sbjct: 307 IIVATIAFGMGIDKSNVRFVIHYDLPRNLESYYQ 340
>gi|387791080|ref|YP_006256145.1| ATP-dependent DNA helicase RecQ [Solitalea canadensis DSM 3403]
gi|379653913|gb|AFD06969.1| ATP-dependent DNA helicase RecQ [Solitalea canadensis DSM 3403]
Length = 729
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 116/326 (35%), Positives = 169/326 (51%), Gaps = 49/326 (15%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSDRVRSVLKSKFN 64
L++ F F+ Q I L D +IMPT SD V+
Sbjct: 11 LQNFFGFEKFKGEQEEIITSILSGNDTFVIMPTGGGKSMCYQLPALMSDGTAIVISPLIA 70
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKK--KICLMTESSSLKLLYVSPEKLAKS 122
L + +QL A D+I L K + K+ S KLLYV+PE L+K
Sbjct: 71 LMKNQVDQLRAFG----STDSIAHFLNSSLNKTETAKVKQDVLSGETKLLYVAPESLSKQ 126
Query: 123 KS--FMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLT 179
++ F+ + ++ +A+DE HC S WGHDFRP+Y+ + I+ + ++PI+ LT
Sbjct: 127 ENIDFLRDID-------ISFVAVDEAHCISEWGHDFRPEYRKIRQIIGQLGENIPIIALT 179
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATAT KV D+QK LQ+++ V K+ FNRPNLFYE+R K K+ L E+ + +
Sbjct: 180 ATATPKVQQDIQKNLQMQNSQVFKSSFNRPNLFYEIRPK----KNELKEIIKYIKSQ-NG 234
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 281
++GIIY S K+ E++ E L G++ YHA L++N +IAF
Sbjct: 235 KAGIIYCLSRKKVEEVAETLNVNGIKALPYHAGLDANTRATTQDKFLMEDVQVIVATIAF 294
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GIDKP+VRFVIH+ + KSME +YQ
Sbjct: 295 GMGIDKPDVRFVIHYDMPKSMEGYYQ 320
>gi|365961574|ref|YP_004943141.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium columnare ATCC
49512]
gi|365738255|gb|AEW87348.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium columnare ATCC
49512]
Length = 731
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 169/329 (51%), Gaps = 55/329 (16%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFN 64
LK F + F+ Q + + +++ +IMPT S + V V+
Sbjct: 12 LKKYFGFSQFKGLQEQVVKSIVSRENTFVIMPTGGGKSLCYQLPALIQEGVAIVVSP--- 68
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLK------KKKICLMTESSSLKLLYVSPEK 118
L NQ+ A+ +L DAI + L K KK I S KLLYV+PE
Sbjct: 69 LIALMKNQVDALR-SLGSGDAIAHVLNSSLNKTEINQVKKDIA----SGFTKLLYVAPES 123
Query: 119 LAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGL 178
L K + K ++ +AIDE HC S WGHDFRP+Y+ L + ++PI+GL
Sbjct: 124 LTKEEYI-----DFLKEHKISFVAIDEAHCISEWGHDFRPEYRNLRNIIRALGEIPIIGL 178
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS--RR 236
TATAT KV D+ K L++ D V KA FNRPNLFYEVR K + AD++ ++
Sbjct: 179 TATATPKVQEDILKNLEMSDANVFKASFNRPNLFYEVRTKTKNVE------ADIIRFIKQ 232
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------S 278
+ +SG+IY S K+ E++ E L+ G+ YHA L++ +
Sbjct: 233 HKGKSGVIYCLSRKKVEEIAEVLKVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVAT 292
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
IAFG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 293 IAFGMGIDKPDVRFVIHHDIPKSLESYYQ 321
>gi|113476788|ref|YP_722849.1| ATP-dependent DNA helicase RecQ [Trichodesmium erythraeum IMS101]
gi|110167836|gb|ABG52376.1| ATP-dependent DNA helicase RecQ [Trichodesmium erythraeum IMS101]
Length = 731
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/316 (35%), Positives = 158/316 (50%), Gaps = 71/316 (22%)
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG-------------------------- 92
LK+ F FRP Q I AL +KD +IIMPTG
Sbjct: 18 LKNYFGYDSFRPGQKQIIQTALQQKDLLIIMPTGGGKSLCFQMPALLKPGLTIVVSPLIS 77
Query: 93 ------KLLKKKKICL--------MTES---------SSLKLLYVSPEKLAKSKSFMTKL 129
+ LK I +TE+ +KLLYV+PE+L S+ F+ L
Sbjct: 78 LMQDQVESLKDNGIAATFLNSTLDLTETRRRSTDIILGKIKLLYVAPERLL-SEKFLEFL 136
Query: 130 QKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLD 189
+ + ++ AIDE HC S WGHDFRP+Y+ L +L+ +PDVPI+ LTATAT +V D
Sbjct: 137 ELISSQQGISTFAIDEAHCVSEWGHDFRPEYRQLKLLRETYPDVPIMALTATATKRVRED 196
Query: 190 VQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSI 249
+ L ++ + A F R NL+YEVR K +A K+ E+ ++ R SGI+Y S
Sbjct: 197 ITTQLNLQKPYIHIASFFRSNLYYEVRQKTSA-KNTFAEILQII--RTIGGSGIVYCNSR 253
Query: 250 KECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDKPNVR 291
K +++ +LR + AYHA + ++AFG+GIDKP+VR
Sbjct: 254 KRVDEIAYKLRQNNVSALAYHAGMTDEERTTNQTKFIRDDVDVIVATVAFGMGIDKPDVR 313
Query: 292 FVIHHCLSKSMENFYQ 307
FVIH+ LSK++E +YQ
Sbjct: 314 FVIHYDLSKNIEGYYQ 329
>gi|397169212|ref|ZP_10492647.1| ATP-dependent DNA helicase [Alishewanella aestuarii B11]
gi|396089292|gb|EJI86867.1| ATP-dependent DNA helicase [Alishewanella aestuarii B11]
Length = 605
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 176/336 (52%), Gaps = 59/336 (17%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT-------------DYPWSDR 54
S+++ +VLK F + +R Q I+ L +D +++PT P
Sbjct: 2 SEQLLAVLKQSFGYSSWRSGQQEIISAVLQGRDCFVLLPTGGGKSLCYQLPALQLPGVTL 61
Query: 55 VRSVLKS--KFNLTDFRPNQLAAINI-ALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
V S L S K + R N +AA + + L ++A++ + LKL
Sbjct: 62 VVSPLMSLMKDQVDSLRANGIAAAYVNSSLSREAVL-----------DVLNQLRYGELKL 110
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PE+L + SF+ +LQ++ ++ AIDE HC S WGHDFRPDY LS LK FP
Sbjct: 111 LYVAPERLLQP-SFLERLQEV----GVSLFAIDEAHCISQWGHDFRPDYMALSQLKQRFP 165
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDEL 229
VP + LTATA D+ + L + + + + F+RPN+ Y V + +P L++L
Sbjct: 166 GVPFIALTATADPATQQDILQQLGLSNPYIHRGSFDRPNIRYTVQEKFRP------LEQL 219
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------- 276
+ ++ NQSGIIY +S ++ ++L +L+ RG +V+AYHA +S
Sbjct: 220 LAYLKQQ-ENQSGIIYCSSRRKVDELTAQLQERGYKVAAYHAGHDSTERQRVQDAFKRDD 278
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+G+DKPN+RFV+H L +++E +YQ
Sbjct: 279 INLIVATVAFGMGVDKPNIRFVVHFELPRTIEAYYQ 314
>gi|403419682|emb|CCM06382.1| predicted protein [Fibroporia radiculosa]
Length = 1116
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 166/333 (49%), Gaps = 40/333 (12%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--------------DRVRSVLK 60
L+ F LT FR NQL I + +D +++MPT S V V+
Sbjct: 383 LQRCFGLTSFRKNQLETIIATMTGRDTLVLMPTGGGKSLCYQLPAICTSGVTRGVTVVIS 442
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
L + QL I +L ++ + T + L ++Y +PEKL
Sbjct: 443 PLLALMQDQVEQLNRKGIDVLYFNSDQDREESARVASHLRAYGTGNKPL-IVYATPEKLQ 501
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
S F++ L+ +Y G LAR IDE HC WG DFR Y+ L L+ FP +PI+ LTA
Sbjct: 502 HSGEFLSILKGLYSKGLLARFPIDEAHCIVKWGRDFREAYKLLGRLRDEFPKIPIMALTA 561
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TAT +V D+ ++L+I+DC ++ NR NLFYE+R K KD + D + + N+
Sbjct: 562 TATEQVKTDIIRLLKIKDCEILWQSMNRQNLFYEIRSKKGYIKD----MVDFIVTQHSNE 617
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSA--YHAKLESN------------------VSIA 280
+GIIY S K CE+L + LR++ R+ A YHA + S ++A
Sbjct: 618 TGIIYCQSRKSCEELAKTLRDQ-YRLDALHYHAGMISADRKDVQARWQTGRCKIIVATVA 676
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
FG+G+DKP+VRFVIH L ++ +YQ + G
Sbjct: 677 FGMGVDKPDVRFVIHRDLPNDLDGYYQETGRAG 709
>gi|406997576|gb|EKE15607.1| hypothetical protein ACD_11C00117G0003 [uncultured bacterium]
Length = 719
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 118/327 (36%), Positives = 168/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRP 70
+ ++LK F +FRP Q I L K+D ++MPT S L + F P
Sbjct: 1 METILKKYFGFDEFRPLQREIIENVLNKRDTFVLMPTGGGKS------LCYQLPALKF-P 53
Query: 71 NQLAAIN--IALLKKDAIIIMPTG---KLLKK-------KKICLMTESSSLKLLYVSPEK 118
I+ IAL+K + +G + L ++I + +K+LY++PE+
Sbjct: 54 GITLVISPLIALMKDQVDFLKASGVAAEFLNSSLSGDEIQRIQKEIKEGKVKILYIAPER 113
Query: 119 LAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGL 178
+A S F LQ + + IA+DE HC S WGHDFRPDY+ L LK +FP VPI+ L
Sbjct: 114 MA-SNGFENFLQNLKPS----LIAVDEAHCISEWGHDFRPDYRNLRRLKDIFPGVPIMAL 168
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFR 238
TATAT KV D+ L E+ + + FNR NLF+ V +K+ ++L L+ R R
Sbjct: 169 TATATEKVRQDILNQLNFENPNIFISSFNRDNLFFRV----IEKKNSFEKLLKLLENR-R 223
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIA 280
+S IIY S K+ E+L LR+ G AYHA L+S +IA
Sbjct: 224 KESVIIYCFSRKDTENLALNLRSEGFSALAYHAGLDSAKRKKTQEDFIQDKINIIVATIA 283
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GIDKP+VR V+H+ KS+E +YQ
Sbjct: 284 FGMGIDKPDVRMVVHYTFPKSLEGYYQ 310
>gi|269103722|ref|ZP_06156419.1| ATP-dependent DNA helicase RecQ [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163620|gb|EEZ42116.1| ATP-dependent DNA helicase RecQ [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 613
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/340 (34%), Positives = 173/340 (50%), Gaps = 59/340 (17%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
++P + +++L+ F FR Q I AL + D+++IMPT S D
Sbjct: 8 DHPTLAQAQTLLEDVFGYQQFRDGQQDIITTALNRSDSLVIMPTGGGKSLCYQIPALLLD 67
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINI------ALLKKDAIIIMPTGKLLKKKKICLMTESS 107
+ V+ +L + +QL A I + L +D I + + ES
Sbjct: 68 GLTLVISPLISLMKDQVDQLVANGIQAACIHSALTRDEI-----------ETVFSQLESG 116
Query: 108 SLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
LKLLYVSPE++ + F+ +LQ++ LA +A+DE HC S WGHDFRP+Y L LK
Sbjct: 117 ELKLLYVSPERVLM-RDFIARLQQVK----LALLAVDEAHCISQWGHDFRPEYAELGQLK 171
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDC 225
MF +P++ LTATA D+ L +E + F+RPN+ Y + + KP +Q
Sbjct: 172 QMFAPLPVMALTATADETTRQDIISRLALEQPHIHLGSFDRPNIRYTLLEKYKPLSQ--L 229
Query: 226 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--------- 276
L LA + R Q GIIY S K E + E+L GLR +AYHA + N
Sbjct: 230 LSYLASV-----RGQCGIIYCNSRKRVEQICEKLCENGLRAAAYHAGMSVNDRAYVQEAF 284
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KPNVRFVIHH + +++E++YQ
Sbjct: 285 QRDDIHIVVATVAFGMGINKPNVRFVIHHDIPRNIESYYQ 324
>gi|195571657|ref|XP_002103819.1| GD20640 [Drosophila simulans]
gi|194199746|gb|EDX13322.1| GD20640 [Drosophila simulans]
Length = 1473
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 107/316 (33%), Positives = 150/316 (47%), Gaps = 64/316 (20%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---------------- 92
+ S R+ L F L FRPNQL IN LL D ++MPTG
Sbjct: 733 FEHSTRLMHGLSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEG 792
Query: 93 ----------------KLLKKKKIC-------------------LMTESSSLKLLYVSPE 117
L IC L ++ +KLLYV+PE
Sbjct: 793 VTIVISPLKSLIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPE 852
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
K++ S F L + ++R IDE HC S WGHDFRPDY+ L +LK FP+VP +
Sbjct: 853 KISSSARFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIA 912
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT +V LD+ L +++C + FNR NL Y R+ P LD+++ + +
Sbjct: 913 LTATATPRVRLDILAQLNLKNCKWFLSSFNRSNLRY--RVLPKKGVSTLDDISRYIRSKP 970
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHC 297
+ SGIIY S KEC++ +++ G+R +YHA L D +VRFV+H+
Sbjct: 971 AHFSGIIYCLSRKECDETSKKMCKDGIRAVSYHAGL-----------TDTEHVRFVLHYS 1019
Query: 298 LSKSMENFYQVSIAFG 313
L KS+E +YQ + G
Sbjct: 1020 LPKSIEGYYQEAGRAG 1035
>gi|429329645|gb|AFZ81404.1| ATP-dependent DNA helicase, RecQ family member protein [Babesia
equi]
Length = 1077
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 111/332 (33%), Positives = 175/332 (52%), Gaps = 33/332 (9%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS 57
N+ +SD++ + ++ F FR QLAAIN +L +D ++M T Y + +
Sbjct: 386 NFHFSDKLDRLNETVFGYKGFRGVQLAAINAIMLGRDCFVMMATGGGKSHCYQLPSLLLN 445
Query: 58 VLKSKFN-LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLK---LLY 113
L F+ L +Q+ I ++ + + T + L+ L+ ++ + + +L+
Sbjct: 446 GLVVVFSPLISLMEDQIHIIKSYGIQAETLNAKSTAQDLRHLSKRLLDKNETFEHGCILF 505
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
++PEK KS S M LQ + A L IDE HC S WG FR DY+ L LK FP+V
Sbjct: 506 ITPEKFDKSTSVMKLLQNVDNADRLKLFVIDEAHCVSQWGLSFRKDYRKLGNLKGSFPNV 565
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
PIL LTATAT VM+D+ +L +++ V ++ NRPNL+ EVR K K+ E+ D++
Sbjct: 566 PILALTATATPDVMVDITNVLSLKNHVTVRTTINRPNLWIEVREKT---KNTTKEIIDIL 622
Query: 234 SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------- 276
++ GIIY + +C+ + ++L + V+AYHAKL+ +
Sbjct: 623 TK--TTGCGIIYCLTTSDCDKMAQKLSESNISVAAYHAKLDISERSLAQKQWKMGLVRVM 680
Query: 277 -VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFV H S+ +YQ
Sbjct: 681 IATIAFGMGIDKPDVRFVFHSSAPTSILGYYQ 712
>gi|395324100|gb|EJF56547.1| ATP-dependent DNA helicase [Dichomitus squalens LYAD-421 SS1]
Length = 817
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 116/353 (32%), Positives = 177/353 (50%), Gaps = 45/353 (12%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
+ W+ + LK+ F FR Q + N L ++D + IMPT S ++ ++L
Sbjct: 91 EFEWTGALYDKLKTVFGFDSFRSCQESICNANLDRRDIVAIMPTGGGKSLGYQLPALLTP 150
Query: 62 KFNLTDFRPNQLAAINIALLKKDAI-IIMPTGKLLKK------KKICLMTESS----SLK 110
L L A + L + + +M TG K+ +++ M + +K
Sbjct: 151 GCTLVISPLLALIADQVMHLHEAGVDAVMLTGATSKEEQNRIYQRLQAMANGTPGAPDIK 210
Query: 111 LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170
L YV+PEK+A SK F L K+++ LAR IDE HC S GHDFRPDYQ L++L+ ++
Sbjct: 211 LCYVTPEKIANSKKFKAALDKLHRVHKLARFVIDEAHCVSQQGHDFRPDYQKLNVLRELW 270
Query: 171 PDVPILGLTATATTKVMLDVQKML---------QIEDCVVIKAPFNRPNLFYEVRIKPAA 221
P VP L L+AT V+ D+ + L +++ V+ R NL Y V KP++
Sbjct: 271 PGVPFLALSATCPAAVLGDLLRTLGMRRPTHAQAVDETVIFSTSLYRKNLHYAVLPKPSS 330
Query: 222 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREE---LRNRGLRVSAYHAKL----- 273
++++ D + RN +GI+Y + K+CE + E+ L + +R YHA +
Sbjct: 331 GTGSIEKMRDYILTHHRNDTGIVYCLTRKDCESVAEDLMRLSDGAIRTGVYHADVADAKK 390
Query: 274 --------ESNV-----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
E V +IAFGLGIDK +VRFV+HH SKS++ FYQ S G
Sbjct: 391 EALHRQWREGKVKVVCATIAFGLGIDKGDVRFVVHH--SKSLDGFYQESGRAG 441
>gi|225011808|ref|ZP_03702246.1| ATP-dependent DNA helicase, RecQ family [Flavobacteria bacterium
MS024-2A]
gi|225004311|gb|EEG42283.1| ATP-dependent DNA helicase, RecQ family [Flavobacteria bacterium
MS024-2A]
Length = 729
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 178/332 (53%), Gaps = 46/332 (13%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DRVRSV 58
SD ++ LK F + F+ Q + I L K+++ +IMPT S ++
Sbjct: 3 SDDLKKALKKHFGFSTFKGLQESVITHMLNKENSFVIMPTGGGKSLCYQLPALMQEGTAI 62
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKK--KKICLMTESSSLKLLYVSP 116
+ S L NQ+ AI + ++ I + L K +++ S KLLYV+P
Sbjct: 63 VVSP--LIALMKNQVDAIR-GISSENGIAHVLNSSLNKTAVEQVKSDIRSGITKLLYVAP 119
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPI 175
E L+K ++ +K+ ++ +A+DE HC S WGHDFRP+Y+ L +IL+ + +PI
Sbjct: 120 ESLSKRENI-----DFFKSVKISFLAVDEAHCISEWGHDFRPEYRNLRAILEQLEQPIPI 174
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS- 234
+ LTATAT KV DV K L+I + KA FNRPNL+YEVR K Q D +D++
Sbjct: 175 IALTATATPKVQEDVMKNLRISGARLFKASFNRPNLYYEVRPK-TGQVD-----SDIIRF 228
Query: 235 -RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------- 276
++ +SGIIY S K E+L + L+ G+ YHA L+S
Sbjct: 229 IKQNSGKSGIIYCLSRKRVEELAQTLQVNGINALPYHAGLDSKSRVNNQDQFLKDDCDVI 288
Query: 277 -VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 289 VATIAFGMGIDKPDVRFVIHHDIPKSIESYYQ 320
>gi|375109707|ref|ZP_09755949.1| ATP-dependent DNA helicase [Alishewanella jeotgali KCTC 22429]
gi|374570229|gb|EHR41370.1| ATP-dependent DNA helicase [Alishewanella jeotgali KCTC 22429]
Length = 605
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 176/336 (52%), Gaps = 59/336 (17%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT-------------DYPWSDR 54
S+++ +VLK F + +R Q I+ L +D +++PT P
Sbjct: 2 SEQLLAVLKQSFGYSSWRNGQQEIISAVLQGRDCFVLLPTGGGKSLCYQLPALQLPGVTL 61
Query: 55 VRSVLKS--KFNLTDFRPNQLAAINI-ALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
V S L S K + R N +AA + + L ++A++ + LKL
Sbjct: 62 VVSPLMSLMKDQVDSLRANGIAAAYVNSSLSREAVL-----------DVLNQLRYGELKL 110
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PE+L + SF+ +LQ++ ++ AIDE HC S WGHDFRPDY LS LK FP
Sbjct: 111 LYVAPERLLQP-SFLERLQEV----GVSLFAIDEAHCISQWGHDFRPDYMALSQLKQRFP 165
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDEL 229
VP + LTATA D+ + L + + + + F+RPN+ Y V + +P L++L
Sbjct: 166 GVPFIALTATADPATQQDILQQLGLSNPYIHRGSFDRPNIRYTVQEKFRP------LEQL 219
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------- 276
+ ++ NQSGIIY +S ++ ++L +L+ RG +V+AYHA +S
Sbjct: 220 LAYLKQQ-ENQSGIIYCSSRRKVDELTAQLQERGYKVAAYHAGHDSTERQRVQDAFKRDD 278
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+G+DKPN+RFV+H L +++E +YQ
Sbjct: 279 INLIVATVAFGMGVDKPNIRFVVHFELPRTIEAYYQ 314
>gi|238022984|ref|ZP_04603410.1| hypothetical protein GCWU000324_02906 [Kingella oralis ATCC 51147]
gi|237865792|gb|EEP66930.1| hypothetical protein GCWU000324_02906 [Kingella oralis ATCC 51147]
Length = 604
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 112/331 (33%), Positives = 165/331 (49%), Gaps = 42/331 (12%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ +L+ F +FR NQ I+ + A ++MPT S + V V+
Sbjct: 4 AQQILQDTFGYPNFRGNQAQIIDTVVQGNSAFVLMPTGGGKSLCYQIPALMREGVAIVIS 63
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
L D + A+ I A + ++I +S SLKLLYVSPE+L
Sbjct: 64 PLIALMDDQVANARAVGI-----HAAAVHSGTPADTIRQIAEDIDSGSLKLLYVSPERLT 118
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
K F+ L ++ AIDE HC S WGHDFRP+YQ LS+L +P +P + LTA
Sbjct: 119 TEK-FLRFLDHT----TVSLFAIDEAHCVSQWGHDFRPEYQQLSLLAQRYPHIPRIALTA 173
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TA + LD++ LQ+ D + F+RPN+ Y+V + +K +L D + ++ Q
Sbjct: 174 TADAQTRLDIKHYLQLNDAAEFISSFDRPNIHYQVIERQNGKK----QLLDFIQKQAAGQ 229
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKL--------------ESNV----SIAFG 282
SGI+Y S K ED+ + L + GL YHA L E N+ ++AFG
Sbjct: 230 SGIVYCLSRKSVEDIAQYLCDSGLNALPYHAGLPIQTRSQNQHRFTHEDNIIIVATVAFG 289
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+GIDKP+VR+V H + +S+E+FYQ S G
Sbjct: 290 MGIDKPDVRYVAHLDMPQSVEHFYQESGRAG 320
>gi|297738545|emb|CBI27790.3| unnamed protein product [Vitis vinifera]
Length = 746
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 125/353 (35%), Positives = 177/353 (50%), Gaps = 51/353 (14%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKF-----NLT 66
+L+ F +FR QL AI L +D +MPT S ++ ++ K L
Sbjct: 27 LLRWHFGHAEFRGRQLEAIEAILSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVCPLI 86
Query: 67 DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFM 126
NQ+ A+ + + + T K+ K L + SL+LLYV+PE +A + FM
Sbjct: 87 ALMENQVMALKEKGIAAEFLSSTQTTKVRDKIHEDLQSGKPSLRLLYVTPELIA-TPGFM 145
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186
++L K++ G L IAIDE HC SSWGHDFRP Y+ LS L+ PDVPIL LTATA KV
Sbjct: 146 SRLTKIHARGLLNLIAIDEAHCISSWGHDFRPSYRKLSSLRNHLPDVPILALTATAVPKV 205
Query: 187 MLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFR---NQSGI 243
DV + L +++ +V+K+ FNRPN++YEVR KD LD++ +S+ + N GI
Sbjct: 206 QKDVIESLCLQNPLVLKSSFNRPNIYYEVRY-----KDLLDDVYADLSKLLKSCGNVCGI 260
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHA----KLESNV---------------------- 277
+Y C++L L G+ +AYHA KL S+V
Sbjct: 261 VYCLERTTCDELSAHLSKNGISSAAYHAGLNNKLRSSVLDDWISSKIQVVINSWGFFFIF 320
Query: 278 ---------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRS 321
+I +GID+ +VR V H + KSME FYQ S G + RS
Sbjct: 321 NFFLFFALFNIILSIGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSRS 373
>gi|407040860|gb|EKE40365.1| recQ family DNA helicase [Entamoeba nuttalli P19]
Length = 508
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 110/331 (33%), Positives = 175/331 (52%), Gaps = 38/331 (11%)
Query: 7 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN 64
+ R+ L FN+ FRP Q I L KD ++IMPT S +++ VL +
Sbjct: 20 YEQRIDDTLHKCFNIQSFRPQQREIILSTLQHKDTLVIMPTGGGKSLCFQLQPVLTERIT 79
Query: 65 -----LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS--LKLLYVSPE 117
L NQ+ +N + + I+ T + K+ + SS+ L LLYV+PE
Sbjct: 80 IVISPLIALMQNQVDGLNKRGI--TSFILNSTLSKSEATKVLSILNSSNPELYLLYVTPE 137
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
++ K++ F ++K+Y L A+DE HC S WGHDFRP Y LS LK +PD+PI+
Sbjct: 138 QI-KTQRFQNIMKKLYSVKKLGMFAVDEAHCISQWGHDFRPSYLELSYLKKTYPDIPIIA 196
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR-- 235
LTATAT+KV D+ K L++++ + + F+RPN++++V KD + ++++
Sbjct: 197 LTATATSKVKEDIIKSLELKNPQIFTSSFDRPNIYFKV-----IYKDLYETPIQILTQIL 251
Query: 236 -RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------ 276
+ + GIIY ++ ECE + + + G V+ YHA ++S
Sbjct: 252 HQHEKEGGIIYCSTRMECELIEKYISTNGYPVAKYHAGMKSEERETIQKKWESGEVNVVV 311
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GID+ +VRFVIH + K++E F Q
Sbjct: 312 ATIAFGMGIDRGDVRFVIHWNIPKTIEGFMQ 342
>gi|284040794|ref|YP_003390724.1| ATP-dependent DNA helicase RecQ [Spirosoma linguale DSM 74]
gi|283820087|gb|ADB41925.1| ATP-dependent DNA helicase RecQ [Spirosoma linguale DSM 74]
Length = 736
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 114/325 (35%), Positives = 168/325 (51%), Gaps = 43/325 (13%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSDRVRSVLK 60
+R LK F + FR Q A I L ++ +IMPT S+ V+
Sbjct: 12 LRERLKEIFGYSQFRGEQEAIIYSILAGRNTFVIMPTGAGKSLCYQLPAIVSEGTAVVIS 71
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
L + +QL A I +A + T + K+ T + +LKLLY++PE L
Sbjct: 72 PLIALMKNQVDQLNAFGI-----NAQFLNSTLSKAEMNKVKKDTLNGTLKLLYIAPESLT 126
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
K ++ K ++ +AIDE HC S WGHDFRP+Y+ + + ++P++ LTA
Sbjct: 127 KEENL-----DFLKKANISFVAIDEAHCISEWGHDFRPEYRKIRGIVDNIGNLPVIALTA 181
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TAT KV D+QK LQ+ED + K FNR NL+YE+R K A+K + + ++ + +
Sbjct: 182 TATPKVQQDIQKNLQMEDANLYKTSFNRKNLYYEIRPKVDAKKQLIKYI-----KQNKGK 236
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE-----SN-------------VSIAFG 282
SGIIY S K E++ E LR ++ YHA L+ +N +IAFG
Sbjct: 237 SGIIYCLSRKTVEEIAELLRVNDVKALPYHAGLDPVTRMNNQDAFLNEDVDVICATIAFG 296
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GIDKP+VRFVIH+ KS+E +YQ
Sbjct: 297 MGIDKPDVRFVIHYDAPKSLEGYYQ 321
>gi|67475629|ref|XP_653505.1| recQ family DNA helicase [Entamoeba histolytica HM-1:IMSS]
gi|56470462|gb|EAL48119.1| recQ family DNA helicase [Entamoeba histolytica HM-1:IMSS]
gi|449702365|gb|EMD43019.1| ATP-dependent DNA helicase recQ, putative [Entamoeba histolytica
KU27]
Length = 509
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 110/331 (33%), Positives = 175/331 (52%), Gaps = 38/331 (11%)
Query: 7 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN 64
+ R+ L FN+ FRP Q I L KD ++IMPT S +++ VL +
Sbjct: 20 YEQRIDETLHKCFNIQSFRPQQREIILSTLQHKDTLVIMPTGGGKSLCFQLQPVLTERIT 79
Query: 65 -----LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS--LKLLYVSPE 117
L NQ+ +N + + I+ T + K+ + SS+ L LLYV+PE
Sbjct: 80 IVISPLIALMQNQVDGLNKRGI--TSFILNSTLSKSEATKVLSILNSSNPELYLLYVTPE 137
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
++ K++ F ++K+Y L A+DE HC S WGHDFRP Y LS LK +PD+PI+
Sbjct: 138 QI-KTQRFQNIMKKLYSIKKLGMFAVDEAHCISQWGHDFRPSYLELSYLKKTYPDIPIIA 196
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR-- 235
LTATAT+KV D+ K L++++ + + F+RPN++++V KD + ++++
Sbjct: 197 LTATATSKVKEDIIKSLELKNPQIFTSSFDRPNIYFKV-----IYKDLYETPIQILTQIL 251
Query: 236 -RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------ 276
+ + GIIY ++ ECE + + + G V+ YHA ++S
Sbjct: 252 HQHEKEGGIIYCSTRMECELIEKYISTNGYPVAKYHAGMKSEERETIQKKWESGEVNVVV 311
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GID+ +VRFVIH + K++E F Q
Sbjct: 312 ATIAFGMGIDRGDVRFVIHWNIPKTIEGFMQ 342
>gi|425461242|ref|ZP_18840722.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9808]
gi|389825935|emb|CCI23927.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9808]
Length = 701
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 113/328 (34%), Positives = 157/328 (47%), Gaps = 73/328 (22%)
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----------LLKKKK--- 99
D + VLK F FRPNQ I AL +D ++IMPTG L+KK
Sbjct: 5 DSLEKVLKYHFGYDQFRPNQRQIIEAALNDQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 100 ----ICLMTES--------------------------------SSLKLLYVSPEKLAKSK 123
I LM + +KLLYV+PE+L S
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRDRESLILQGKIKLLYVAPERLL-SP 123
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
SF+ L + LA +A+DE HC S WGHDFRP+Y+ + ++ FP VPIL LTATAT
Sbjct: 124 SFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATAT 183
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
+V D+ + L + D + A FNRPNL+YEVR K + L + + + SGI
Sbjct: 184 QQVREDIIQQLGLRDASIHIASFNRPNLYYEVRAKTSKSYQQLYQYI-----KGKKGSGI 238
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGI 285
+Y S K + + E L+ G+ YHA + +IAFG+GI
Sbjct: 239 VYCISRKTVDQVAEHLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATIAFGMGI 298
Query: 286 DKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+KP+VRFV+H+ L +++E +YQ S G
Sbjct: 299 NKPDVRFVVHYDLPRNLEGYYQESGRAG 326
>gi|241765486|ref|ZP_04763451.1| ATP-dependent DNA helicase RecQ [Acidovorax delafieldii 2AN]
gi|241364740|gb|EER59740.1| ATP-dependent DNA helicase RecQ [Acidovorax delafieldii 2AN]
Length = 618
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 168/325 (51%), Gaps = 36/325 (11%)
Query: 12 RSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN----- 64
+SVL+ F FR Q A + + DA+++MPT S +V ++++ +
Sbjct: 5 QSVLRDVFGYEQFRGPQQAIVEHVIAGSDALVLMPTGGGKSLCYQVPAIVRQRQGRGVTI 64
Query: 65 ----LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
L +Q+ A++ A + DA + T + + + L ++ + LLY +PE+L
Sbjct: 65 VVSPLIALMHDQVGALHEAGV--DAAFLNSTLSFDEAQDVELRLQTGDITLLYAAPERL- 121
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+ F+ L +Y+ G L+ AIDE HC S WGHDFRP+Y+ L++L + VP + LTA
Sbjct: 122 NTPRFLGILDSLYRGGHLSLFAIDEAHCVSQWGHDFRPEYRALTVLHERYAGVPRIALTA 181
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TA D+ + LQ+ED + + F+RPN+ Y + +KD +L + R +
Sbjct: 182 TADALTRADIIERLQLEDARLFISSFDRPNIRYTI----VEKKDATTQLLRFIEREHAGE 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282
+G++Y S K E+L L + G+ YHA L++ V +IAFG
Sbjct: 238 AGVVYCQSRKRVEELAATLCDAGITALPYHAGLDTKVRQKNQDRFLREEGIVMVATIAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GIDKP+VRFV H + K++E +YQ
Sbjct: 298 MGIDKPDVRFVAHVDMPKNIEGYYQ 322
>gi|336363644|gb|EGN92022.1| hypothetical protein SERLA73DRAFT_99863 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380498|gb|EGO21651.1| hypothetical protein SERLADRAFT_357494 [Serpula lacrymans var.
lacrymans S7.9]
Length = 527
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 111/328 (33%), Positives = 164/328 (50%), Gaps = 35/328 (10%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP-----------WSDRVRSVLKS 61
S+LK+ F L FR NQL A+N L KD ++MPT S + R V
Sbjct: 2 SILKNTFRLNHFRKNQLEAMNATLNGKDVFVLMPTGGGKSLCYQLPALCQSGKTRGVTFV 61
Query: 62 KFNLTDFRPNQLAAINIALLKKD--AIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKL 119
L +Q+ A+ + + I G + + + S ++YV+PEKL
Sbjct: 62 VSPLIALMFDQVKALKSKNVDAELFGSSISAPGADISTALMRRLRSSEKPSIVYVTPEKL 121
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
+S + L +Y++ +AR IDE HC +WG DFR Y+ L +L+ +PDVPI+ LT
Sbjct: 122 QESPQLQSILSDLYESRQIARFVIDEAHCIVTWGRDFRDAYKSLHVLRERYPDVPIMALT 181
Query: 180 ATAT-TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFR 238
ATA T + V ++ DCV + FNRPNL Y VR P A K+ L + +
Sbjct: 182 ATADLTAIEGIVSRLTLRTDCVRLTQSFNRPNLHYSVR--PKAGKNALQPIVAFIKSNHP 239
Query: 239 NQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKL-----ESN-------------VSI 279
N +G+IY S + C+D+ ++LR + YHA + E N ++
Sbjct: 240 NSTGVIYCLSRQNCDDVAQKLREEYKIDARPYHAAMSALDRERNQVDWQNDKYKVIVATV 299
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
AFG+GIDK +VRFVIH+ + KSM+ +YQ
Sbjct: 300 AFGMGIDKADVRFVIHYSIPKSMDGYYQ 327
>gi|17366086|sp|Q9I920.1|BLM_CHICK RecName: Full=Bloom syndrome protein homolog; AltName: Full=RecQ
helicase homolog
gi|8567899|dbj|BAA96742.1| Gd BLM [Gallus gallus]
Length = 1142
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 158/337 (46%), Gaps = 76/337 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL----------- 95
+ S+ + + KF L FR NQL AIN ALL +D I+MPT GK L
Sbjct: 379 FSHSEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAG 438
Query: 96 --------------------------------------KKKKICLMTESSSLKLLYVSPE 117
K + L + +KLLYV+PE
Sbjct: 439 VTVVISPLRSLIIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPE 498
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
K+ S ++ L+ +Y LAR IDE HC S WGHDFR DY+ L++L+ F VP++
Sbjct: 499 KVCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMA 558
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQ--KDCLDELADLMSR 235
LTATA +V D+Q L++ V FNR NL Y+V K + DCL + + +
Sbjct: 559 LTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDVLPKKPKKVAMDCL----EWIKK 614
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL-ESN------------------ 276
+ SGIIY S EC+ L+ GL AYHA L +SN
Sbjct: 615 YHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVIC 674
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VR+VIH L KS+E +Y S G
Sbjct: 675 ATIAFGMGIDKPDVRYVIHASLPKSVEGYYHESGRAG 711
>gi|425444700|ref|ZP_18824746.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9443]
gi|425454418|ref|ZP_18834158.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9807]
gi|389735511|emb|CCI01005.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9443]
gi|389804921|emb|CCI15689.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9807]
Length = 703
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 173/330 (52%), Gaps = 33/330 (10%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-- 64
D + VLK F FRPNQ I AL +D ++IMPT S ++ +++K
Sbjct: 5 DSLEKVLKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 65 ---LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAK 121
L +Q+ A+ + + K +++++ ++ +KLLYV+PE+L
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLIL--QGKIKLLYVAPERLL- 121
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
S SF+ L + LA +A+DE HC S WGHDFRP+Y+ + ++ FP VPIL LTAT
Sbjct: 122 SPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTAT 181
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQS 241
AT +V D+ + L + D + A FNRPNL+YEV+ K + L + + + S
Sbjct: 182 ATQQVREDIIQQLGLRDTSIHIASFNRPNLYYEVQPKTSKSYQQLYQYI-----KGQKGS 236
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGL 283
GI+Y S K + + E+L+ G+ YHA ++ +IAFG+
Sbjct: 237 GIVYCISRKTVDKVAEQLQKDGIDALPYHAGMDDRERSENQTRFIRDDVQIMVATIAFGM 296
Query: 284 GIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
GI+KP+VRFV+H+ L +++E +YQ S G
Sbjct: 297 GINKPDVRFVVHYDLPRNLEGYYQESGRAG 326
>gi|238793565|ref|ZP_04637189.1| ATP-dependent DNA helicase recQ [Yersinia intermedia ATCC 29909]
gi|238727155|gb|EEQ18685.1| ATP-dependent DNA helicase recQ [Yersinia intermedia ATCC 29909]
Length = 610
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 107/327 (32%), Positives = 174/327 (53%), Gaps = 51/327 (15%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q IN L +D +++MPT S D + V+
Sbjct: 15 QVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMT--ESSSLKLLYVSPEKLA 120
+L + +QL A + ++ +++++ +M S +KLLY++PE+L
Sbjct: 75 ISLMKDQVDQLLAYGVGAGCLNS-------SQTREQQLAVMDGCRSGQIKLLYIAPERLV 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+SF+ +L + A +A+DE HC S WGHDFRP+Y+ L LK FPD+P++ LTA
Sbjct: 128 M-ESFLDQLYQWRPA----LLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L ++ ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADEATRGDIVRLLNLDQPLIQISSFDRPNIRYTLVEKFKP------LDQLWRFVQDQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIA 280
+SGIIY S + ED L++RGL V+AYHA L++ ++A
Sbjct: 236 GKSGIIYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRGQVQEAFQRDDLQVVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRTIESYYQ 322
>gi|145632079|ref|ZP_01787814.1| ATP-dependent DNA helicase [Haemophilus influenzae 3655]
gi|145634861|ref|ZP_01790569.1| organic solvent tolerance protein [Haemophilus influenzae PittAA]
gi|144986986|gb|EDJ93516.1| ATP-dependent DNA helicase [Haemophilus influenzae 3655]
gi|145268027|gb|EDK08023.1| organic solvent tolerance protein [Haemophilus influenzae PittAA]
Length = 619
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 117/325 (36%), Positives = 169/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
SVLKS F FR Q IN AL +DA+++M T S D + V+
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A I +A + + L +++++ S LKLLYVSPEK+ +
Sbjct: 78 ISLMKDQVDQLQANGI-----EADFLNSSQTLEQQQRVQNKLISGQLKLLYVSPEKVM-T 131
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
SF + Y C IAIDE HC S WGHDFRP+Y L LK FPD PI+ LTATA
Sbjct: 132 NSFFQLIS--YSKVCF--IAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATA 187
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFY--EVRIKPAAQKDCLDELADLMSRRFRNQ 240
D+ + L +++ F+RPN+ Y E + KP +++L + + + +
Sbjct: 188 DYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKP------MEQLTRFVLAQ-KGK 240
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282
SGIIY S + E + E LRN+G+ +AYHA +E+ + +IAFG
Sbjct: 241 SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFG 300
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+K NVRFV H L +S+E++YQ
Sbjct: 301 MGINKSNVRFVAHFDLPRSIESYYQ 325
>gi|298209031|ref|YP_003717210.1| ATP-dependent DNA helicase [Croceibacter atlanticus HTCC2559]
gi|83848958|gb|EAP86827.1| putative ATP-dependent DNA helicase [Croceibacter atlanticus
HTCC2559]
Length = 734
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 115/321 (35%), Positives = 170/321 (52%), Gaps = 38/321 (11%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-----LTD 67
LK F + F+ Q I + +D +IMPT S ++ +++K L
Sbjct: 12 LKKYFGFSQFKGLQEQVIKSIVSNEDTFVIMPTGGGKSLCYQLPALIKDGTAIVVSPLIA 71
Query: 68 FRPNQLAAINIALLKKDAIIIMPTGKLLKKK--KICLMTESSSLKLLYVSPEKLAKSKSF 125
NQ+ A+ ++ ++ I + L K + ++ L + KLLYV+PE L K +
Sbjct: 72 LMKNQVDALR-SISSQEGIAHVLNSSLNKTEINQVKLDITNGVTKLLYVAPESLTKDEYV 130
Query: 126 MTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLS-ILKTMFPDVPILGLTATATT 184
K ++ +AIDE HC S WGHDFRP+Y+ L I+K + D+PI+GLTATAT
Sbjct: 131 -----DFLKEQTISFLAIDEAHCISEWGHDFRPEYRNLKKIIKRIGDDIPIIGLTATATP 185
Query: 185 KVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGII 244
KV D+ K L + + KA FNRPNL+YEVR K K+ ++ + +R +SGII
Sbjct: 186 KVQEDILKNLNMSNANTFKASFNRPNLYYEVRPKT---KEVFSDIIRFIKKR-TGKSGII 241
Query: 245 YTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGID 286
Y S K E+L + L+ G+ YHA L++ +IAFG+GID
Sbjct: 242 YCLSRKSVEELAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGID 301
Query: 287 KPNVRFVIHHCLSKSMENFYQ 307
KP+VRFVIHH + KS+E++YQ
Sbjct: 302 KPDVRFVIHHDIPKSLESYYQ 322
>gi|170026209|ref|YP_001722714.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis YPIII]
gi|186893559|ref|YP_001870671.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis PB1/+]
gi|420570412|ref|ZP_15065845.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-05]
gi|420576075|ref|ZP_15070964.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-06]
gi|420634593|ref|ZP_15123519.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-19]
gi|420656190|ref|ZP_15143047.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-34]
gi|420677196|ref|ZP_15162026.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-46]
gi|420715828|ref|ZP_15195768.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-56]
gi|420748668|ref|ZP_15224634.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-64]
gi|420759919|ref|ZP_15234148.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-66]
gi|420770307|ref|ZP_15243422.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-72]
gi|420775288|ref|ZP_15247941.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-76]
gi|420786536|ref|ZP_15257793.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-89]
gi|420791561|ref|ZP_15262319.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-90]
gi|420807567|ref|ZP_15276750.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-93]
gi|169752743|gb|ACA70261.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis YPIII]
gi|186696585|gb|ACC87214.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis PB1/+]
gi|391437458|gb|EIQ98312.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-05]
gi|391441078|gb|EIR01593.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-06]
gi|391501167|gb|EIR55597.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-19]
gi|391518233|gb|EIR70963.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-34]
gi|391549862|gb|EIR99531.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-46]
gi|391581169|gb|EIS27080.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-56]
gi|391611365|gb|EIS53551.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-64]
gi|391626018|gb|EIS66438.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-66]
gi|391635100|gb|EIS74299.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-72]
gi|391645325|gb|EIS83215.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-76]
gi|391652808|gb|EIS89836.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-89]
gi|391658455|gb|EIS94858.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-90]
gi|391675277|gb|EIT09812.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-93]
Length = 597
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 107/325 (32%), Positives = 171/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q IN L +D +++MPT S D + V+
Sbjct: 2 QVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSPL 61
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A + A + + ++ + S +KLLY++PE+L
Sbjct: 62 ISLMKDQVDQLLAYGVG-----AGCLNSSQTREQQLAVMDGCRSGQIKLLYIAPERLVM- 115
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+SF+ +L + A +A+DE HC S WGHDFRP+Y+ L LK FPD+P++ LTATA
Sbjct: 116 ESFLDQLYQWRPA----LLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATA 171
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L ++ ++ + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 172 DEATRGDIVRLLNLDQPLIQISSFDRPNIRYTLVEKFKP------LDQLWRFVQDQ-RGK 224
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S + ED L++RGL V+AYHA L++ ++AFG
Sbjct: 225 SGIIYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFG 284
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 285 MGINKPNVRFVVHFDIPRTIESYYQ 309
>gi|354595778|ref|ZP_09013795.1| ATP-dependent DNA helicase RecQ [Brenneria sp. EniD312]
gi|353673713|gb|EHD19746.1| ATP-dependent DNA helicase RecQ [Brenneria sp. EniD312]
Length = 610
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 107/325 (32%), Positives = 171/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q IN + +D ++IMPT S D + V+
Sbjct: 15 QVLRDTFGYQQFRPGQQEIINATISGRDCLVIMPTGGGKSLCYQIPALVMDGLTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A ++ A + T ++ ++ S +KLLY++PE+L +
Sbjct: 75 ISLMKDQVDQLQAYGVS-----AACLNSTQTREQQHEVMAGCRSGQIKLLYIAPERLT-T 128
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
SF+ L + IA+DE HC S WGHDFRP+Y+ L +K FP +P++ LTATA
Sbjct: 129 DSFLDHLIHWRPS----LIAVDEAHCISQWGHDFRPEYRALGQVKQHFPGLPVIALTATA 184
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L ++ +V + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 185 DETTRSDIVRLLDLQSPLVQISSFDRPNIRYTLVEKFKP------LDQLWMFVQGQ-RGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S + ED+ L++RGL V+AYHA L++ ++AFG
Sbjct: 238 SGIIYCNSRAKVEDISARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|291514588|emb|CBK63798.1| ATP-dependent DNA helicase RecQ [Alistipes shahii WAL 8301]
Length = 730
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 114/326 (34%), Positives = 163/326 (50%), Gaps = 50/326 (15%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFN 64
LK F + F+ NQ A I L KD ++MPT S D V V+
Sbjct: 13 LKEYFGFSSFKGNQEAVIRNVLEGKDTFVLMPTGGGKSLCYQLPAMLMDGVAIVISP--- 69
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTES---SSLKLLYVSPEKLAK 121
L NQ+ A+ ++ I L K + + + KLLY +PE L K
Sbjct: 70 LIALMKNQVDAMRT--FSAESGIAHFLNSSLNKTAVAQVRQDVLDGKTKLLYFAPESLTK 127
Query: 122 SK--SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
+F+ K++ ++ AIDE HC S WGHDFRP+Y+ + + P++ LT
Sbjct: 128 EDNVAFLRKIK-------VSFYAIDEAHCISEWGHDFRPEYRRIRPIINEIGSAPLIALT 180
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATAT KV LD+QK L + D V K+ FNRPNL+YE+R K D + ++
Sbjct: 181 ATATPKVQLDIQKNLGMSDASVFKSSFNRPNLYYEIRPKHNVDHDII-----RFIKQNEG 235
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 281
+SGIIY S K+ E+L E L G+R AYHA ++++ +IAF
Sbjct: 236 KSGIIYCLSRKKVEELTELLVANGIRALAYHAGMDASTRAANQDDFLMERVEVIVATIAF 295
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GIDKP+VR+VIH+ + KS+E +YQ
Sbjct: 296 GMGIDKPDVRYVIHYDIPKSLEGYYQ 321
>gi|448239974|ref|YP_007404027.1| ATP-dependent DNA helicase [Serratia marcescens WW4]
gi|445210338|gb|AGE16008.1| ATP-dependent DNA helicase [Serratia marcescens WW4]
Length = 614
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 107/325 (32%), Positives = 172/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q IN A+ +D +++MPT S D + V+
Sbjct: 19 QVLRDTFGYQQFRPGQQTIINAAIGGQDCLVVMPTGGGKSLCYQIPALVMDGLTLVVSPL 78
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A ++ A T ++ + + ++K+LY++PE+L
Sbjct: 79 ISLMKDQVDQLLAYGVS-----AACYNSTQTREEQLDVMAGCRNGTIKMLYIAPERLMM- 132
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+SF++ L A +A+DE HC S WGHDFRP+Y+ L LK FP +P++ LTATA
Sbjct: 133 ESFLSLLDHCPPA----MLAVDEAHCISQWGHDFRPEYRALGQLKQRFPSMPVIALTATA 188
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L ++D +V + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 189 DEATRGDIVRLLSLQDPLVQVSSFDRPNIRYTLVEKFKP------LDQLWRFVQDQ-RGK 241
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S + ED L++RGL V AYHA L+++ ++AFG
Sbjct: 242 SGIIYCNSRAKVEDTAARLQSRGLSVGAYHAGLDNDRRAQVQEAFQRDDLQVVVATVAFG 301
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 302 MGINKPNVRFVVHFDIPRNIESYYQ 326
>gi|167540323|ref|XP_001741831.1| ATP-dependent DNA helicase recQ [Entamoeba dispar SAW760]
gi|165893416|gb|EDR21673.1| ATP-dependent DNA helicase recQ, putative [Entamoeba dispar SAW760]
Length = 508
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 110/331 (33%), Positives = 174/331 (52%), Gaps = 38/331 (11%)
Query: 7 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN 64
+ R+ L FN+ FRP Q I L KD ++IMPT S +++ VL +
Sbjct: 20 YEQRIDETLHKCFNIQSFRPQQREIILSTLQHKDTVVIMPTGGGKSLCFQLQPVLTERIT 79
Query: 65 -----LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS--LKLLYVSPE 117
L NQ+ +N + + I+ T + K+ + SS+ L LLYV+PE
Sbjct: 80 IVISPLIALMQNQVDGLNKRGI--TSFILNSTLSKSEATKVLSLLNSSNPELYLLYVTPE 137
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
++ K++ F ++K+Y L A+DE HC S WGHDFRP Y LS LK +PD+PI+
Sbjct: 138 QI-KTQRFQNIMKKLYSIKKLGMFAVDEAHCISQWGHDFRPSYLELSYLKKTYPDIPIIA 196
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR-- 235
LTATAT KV D+ K L++++ + + F+RPN++++V KD + ++++
Sbjct: 197 LTATATPKVKEDIIKSLELKNPKIFTSSFDRPNIYFKV-----IYKDLYETPIQILTQIL 251
Query: 236 -RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------ 276
+ + GIIY ++ ECE + + + G V+ YHA ++S
Sbjct: 252 HQHEKEGGIIYCSTRMECELIEKYISTNGYPVAKYHAGMKSEERETIQKKWENGEVNVVV 311
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GID+ +VRFVIH + K++E F Q
Sbjct: 312 ATIAFGMGIDRGDVRFVIHWNIPKTIEGFMQ 342
>gi|238798601|ref|ZP_04642077.1| ATP-dependent DNA helicase recQ [Yersinia mollaretii ATCC 43969]
gi|238717557|gb|EEQ09397.1| ATP-dependent DNA helicase recQ [Yersinia mollaretii ATCC 43969]
Length = 610
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 171/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q IN L +D +++MPT S D + V+
Sbjct: 15 QVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A + A + + ++ + S +KLLY++PE+L
Sbjct: 75 ISLMKDQVDQLLAYGVG-----AGCLNSSQTREQQLAVMDGCRSGQIKLLYIAPERLVM- 128
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+SF+ +L + A +A+DE HC S WGHDFRP+Y+ L LK FP++P++ LTATA
Sbjct: 129 ESFLDQLHQWRPA----LLAVDEAHCISQWGHDFRPEYRALGQLKQRFPNLPVIALTATA 184
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L ++ ++ + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 185 DEATRGDIVRLLNLDQPLIQVSSFDRPNIRYTLVEKFKP------LDQLWRFVQDQ-RGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S + ED L++RGL V+AYHA L++ ++AFG
Sbjct: 238 SGIIYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 298 MGINKPNVRFVVHFDIPRTIESYYQ 322
>gi|386812206|ref|ZP_10099431.1| DNA helicase RecQ [planctomycete KSU-1]
gi|386404476|dbj|GAB62312.1| DNA helicase RecQ [planctomycete KSU-1]
Length = 714
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 116/326 (35%), Positives = 168/326 (51%), Gaps = 51/326 (15%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDFRPN 71
L+ F T F P Q I L ++DA ++MPT S ++ ++L S +
Sbjct: 4 TLQKYFGYTSFYPLQEDIIKEVLAQRDAFVLMPTGGGKSLCYQLPALLFSGVTI------ 57
Query: 72 QLAAINIALLKKDAIIIMPTG------------KLLKKKKICLMTESSSLKLLYVSPEKL 119
+ + IAL+K ++ G + K+ L+ ++ +K+LY++PE+L
Sbjct: 58 -VVSPLIALMKDQVDGLLANGIPAIFINSSLSYSEIDAKRQSLL--NNEIKILYIAPERL 114
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
FM + + + ++ AIDE HC S WGHDFRP+Y+ L ILK FP VP++ LT
Sbjct: 115 -----FMPEFLQFLQGLKISLFAIDESHCISEWGHDFRPEYRQLEILKEKFPKVPVMALT 169
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATAT V D+ L++ DC + KA FNR NL+Y+++ K L L SR +
Sbjct: 170 ATATPAVQKDIILQLKLSDCRIFKASFNRKNLYYQIKPKDNPYHQILHYLK---SR--KK 224
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 281
SGIIY S K E L L+ G RV YHA L + V +IAF
Sbjct: 225 DSGIIYCQSRKTVESLTTSLQAEGYRVLPYHAGLPAEVRTENQERFIHDDVEIIVATIAF 284
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GIDKP+VR+VIH+ L KS+E +YQ
Sbjct: 285 GMGIDKPDVRYVIHYDLPKSIEGYYQ 310
>gi|301096912|ref|XP_002897552.1| bloom syndrome protein, DEAD/DEAH box helicase [Phytophthora
infestans T30-4]
gi|262107012|gb|EEY65064.1| bloom syndrome protein, DEAD/DEAH box helicase [Phytophthora
infestans T30-4]
Length = 400
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 132/226 (58%), Gaps = 20/226 (8%)
Query: 102 LMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQ 161
L + S+KLLY++PEK+ KS M L+ +++ LAR IDE HC S WGHDFRP+Y
Sbjct: 77 LKRSAPSVKLLYLTPEKIIKSPEMMDLLKDLHRNKMLARFVIDEAHCVSQWGHDFRPEYN 136
Query: 162 YLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKP-A 220
L +LK FP VP++ LTATA KV+ V+K L I + V FNR NL +EVR KP
Sbjct: 137 QLGLLKKTFPTVPLMALTATAPPKVIDHVKKSLLISNGHVFSMSFNRQNLTFEVRDKPRG 196
Query: 221 AQKDCLDELADLMSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--- 276
K LD L L+S+ + + GI+Y + ++CE++ L + GL YHA +
Sbjct: 197 GDKKALDALYQLISKTYPPDAVGIVYCMTKQDCENVANYLFDHGLSADFYHAGQSATDRH 256
Query: 277 ---------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IA+G+GI+KP+VR+VIH ++KS+E +YQ
Sbjct: 257 MVQEAWQNGQLSIVCATIAYGMGINKPDVRYVIHFSVAKSIEGYYQ 302
>gi|443309958|ref|ZP_21039633.1| ATP-dependent DNA helicase RecQ [Synechocystis sp. PCC 7509]
gi|442780011|gb|ELR90229.1| ATP-dependent DNA helicase RecQ [Synechocystis sp. PCC 7509]
Length = 724
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 113/331 (34%), Positives = 174/331 (52%), Gaps = 29/331 (8%)
Query: 6 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKF 63
P + S LK F T FR Q I AL +D +++MPT S ++ ++L+
Sbjct: 2 PQLQPLESTLKKYFGYTSFRLGQQQIIEQALNNQDLLVVMPTGGGKSLCFQLPALLRKGL 61
Query: 64 NLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE---SSSLKLLYVSPEKLA 120
+ L + L+ + I L ++ E S +KLLYV+PE+L
Sbjct: 62 TVVVSPLIALMQDQVQSLRNNGIGATFLNSTLTTYQVRSREEAILSGKVKLLYVAPERLL 121
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
S F+ + + +A AIDE HC S WGHDFRPDY+ L L+ +P+VP + LTA
Sbjct: 122 -SDRFLPFIDLVQHQIGIASFAIDEAHCVSEWGHDFRPDYRQLRALRQRYPNVPTIALTA 180
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TAT +V D+ + L + ++ A FNRPNL+Y+V+ K QK ++L L+++
Sbjct: 181 TATDRVRSDIIQQLNLTKPIIHVASFNRPNLYYDVQPK---QKQAYNQLKQLVTK--HEG 235
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKL-----ESN-------------VSIAFG 282
+GIIY S ++ +D+ +L+ G+ YHA L ESN ++AFG
Sbjct: 236 AGIIYCLSRRKVDDITMKLQQDGISALPYHAGLSDAERESNQTRFIRDDARLMVATVAFG 295
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+GI+KP+VRFVIH+ L +++E++YQ S G
Sbjct: 296 MGINKPDVRFVIHYDLPRNIESYYQESGRAG 326
>gi|164658479|ref|XP_001730365.1| hypothetical protein MGL_2747 [Malassezia globosa CBS 7966]
gi|159104260|gb|EDP43151.1| hypothetical protein MGL_2747 [Malassezia globosa CBS 7966]
Length = 317
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/231 (37%), Positives = 131/231 (56%), Gaps = 33/231 (14%)
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169
+LLYV+PE++ KSK+ + LQ++Y+AG L RI +DE HCCS GHD+RPDY LSI + +
Sbjct: 3 RLLYVTPERIVKSKTLLATLQRVYEAGRLERIVVDEAHCCSMMGHDYRPDYHKLSICRRL 62
Query: 170 FPDVPILGLTATATTKVMLDVQKMLQIED------------CVVIKAPFNRPNLFYEVRI 217
FP+ P++GLTAT + + + DV ++L + D V +AP +RPNL Y VR+
Sbjct: 63 FPETPMMGLTATLSAQALCDVLQILGMRDSTTQPTEALPRRTVYFRAPLSRPNLKYSVRM 122
Query: 218 KPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLRE---ELRNRGLRVSAYHAKLE 274
+P + + + SGI+Y S K+ + E +L + + YH+ L+
Sbjct: 123 RPTNALATQQMVTSYILQHHAEHSGIVYCLSRKDTHTMSEALTQLSHGQILTGVYHSDLD 182
Query: 275 S------------------NVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDK +VRFV+H C+SKS+E +YQ
Sbjct: 183 EVEKHRVHTMWRTGEIKVVCATIAFGMGIDKGDVRFVVHACISKSLEGYYQ 233
>gi|325103763|ref|YP_004273417.1| ATP-dependent DNA helicase RecQ [Pedobacter saltans DSM 12145]
gi|324972611|gb|ADY51595.1| ATP-dependent DNA helicase RecQ [Pedobacter saltans DSM 12145]
Length = 728
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 166/324 (51%), Gaps = 45/324 (13%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSDRVRSVLKSKFN 64
L++ F +F+ +Q A I L K+D +IMPT S+ V+
Sbjct: 11 LQTFFGFDNFKGDQEAIITSILNKEDTFVIMPTGGGKSICYQLPALMSEGTALVISPLIA 70
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE--SSSLKLLYVSPEKLAKS 122
L + +QL A D+I L K + + + S KLLYV+PE L K
Sbjct: 71 LMKNQVDQLRAFG----GYDSIAHFLNSSLTKTETNRVKEDVISGKTKLLYVAPESLIKQ 126
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLTAT 181
++ K+ ++ +A+DE HC S WGHDFRP+Y+ + ++ + D+PI+ LTAT
Sbjct: 127 ENI-----DFLKSVTVSFVAVDEAHCISEWGHDFRPEYRKIRQVVNNIREDIPIIALTAT 181
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQS 241
AT KV D+QK L + + V K+ FNR NLFYEVR K KD + + + +S
Sbjct: 182 ATPKVQTDIQKNLGMMNANVFKSSFNRGNLFYEVRPKGNVFKDIIKYI-----KNNPGKS 236
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGL 283
GI+Y S K+ E++ L G+R YHA L++ V +IAFG+
Sbjct: 237 GIVYCLSRKKVEEVANALEINGIRSLPYHAGLDAKVRADTQDKFLMEEVDVIVATIAFGM 296
Query: 284 GIDKPNVRFVIHHCLSKSMENFYQ 307
GIDKP+VR+VIHH + KSME +YQ
Sbjct: 297 GIDKPDVRYVIHHDIPKSMEGYYQ 320
>gi|453064584|gb|EMF05549.1| ATP-dependent DNA helicase RecQ [Serratia marcescens VGH107]
Length = 610
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 107/325 (32%), Positives = 171/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q IN A+ +D +++MPT S D + V+
Sbjct: 15 QVLRDTFGYQQFRPGQQTIINAAIGGQDCLVVMPTGGGKSLCYQIPALVMDGLTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A ++ A T ++ + + ++K+LY++PE+L
Sbjct: 75 ISLMKDQVDQLLAYGVS-----AACYNSTQTREEQLDVMAGCRNGTIKMLYIAPERLMM- 128
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+SF+ L A +A+DE HC S WGHDFRP+Y+ L LK FP +P++ LTATA
Sbjct: 129 ESFLNLLDHCPPA----MLAVDEAHCISQWGHDFRPEYRALGQLKQRFPSMPVIALTATA 184
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L ++D +V + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 185 DEATRGDIVRLLSLQDPLVQVSSFDRPNIRYTLVEKFKP------LDQLWRFVQDQ-RGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S + ED L++RGL V AYHA L+++ ++AFG
Sbjct: 238 SGIIYCNSRAKVEDTAARLQSRGLSVGAYHAGLDNDRRAQVQEAFQRDDLQVVVATVAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|312129258|ref|YP_003996598.1| ATP-dependent DNA helicase recq [Leadbetterella byssophila DSM
17132]
gi|311905804|gb|ADQ16245.1| ATP-dependent DNA helicase RecQ [Leadbetterella byssophila DSM
17132]
Length = 773
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 113/327 (34%), Positives = 168/327 (51%), Gaps = 44/327 (13%)
Query: 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVL 59
R++ LK F +FR Q I + K+ +IMPT S + V+
Sbjct: 9 RLKQNLKEIFGFDNFRGEQEKIIKSVISGKNTFVIMPTGAGKSLCYQLPATVLEGTAIVI 68
Query: 60 KSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKL 119
L + +QL A I +A + T + ++ S KLLY++PE L
Sbjct: 69 SPLIALMKNQVDQLTAYGI-----NAQFLNSTLNKSEMNRVKNDVISGVCKLLYIAPESL 123
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGL 178
K + + K ++ +A+DE HC S WGHDFRP+Y+ + I++ + +PI+ L
Sbjct: 124 TKEDNL-----EFLKKAKISFVAVDEAHCISEWGHDFRPEYRKIKDIIENIDTALPIVAL 178
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFR 238
TATAT KV LD++K L ++D V+ K FNR NL+YEVR K A+K +L +S+ R
Sbjct: 179 TATATPKVQLDIKKSLNMDDSVIFKTSFNRANLYYEVRPKQNAKK----QLIKFVSQN-R 233
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGI+Y S K+ E++ E L G + YHA L+ V +IA
Sbjct: 234 GKSGIVYCLSRKKVEEIAELLNVNGFKALPYHAGLDPEVRMKNQDAFLNENCDIVVATIA 293
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GIDKP+VRFV+H+ KS+E +YQ
Sbjct: 294 FGMGIDKPDVRFVVHYDAPKSLEGYYQ 320
>gi|428778146|ref|YP_007169933.1| ATP-dependent DNA helicase RecQ [Halothece sp. PCC 7418]
gi|428692425|gb|AFZ45719.1| ATP-dependent DNA helicase RecQ [Halothece sp. PCC 7418]
Length = 709
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 173/324 (53%), Gaps = 37/324 (11%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDF 68
+ + LK F FRP Q A I ++D + +MPT S ++ ++LK +
Sbjct: 4 LETALKQYFGYETFRPGQKAIIEAVYQQRDVLAVMPTGGGKSLCYQLPALLKPGLAVVVS 63
Query: 69 RPNQLAAINIALLKKDAIIIM-----PTGKLLKKKKICLMTESSSLKLLYVSPEKLAK-- 121
L + L+K+ I T + + +++ ++ + +KLLY++PEKL
Sbjct: 64 PLIALMQDQVETLQKNGIAATFLNSSLTAEEARSRRLSIL--NGEMKLLYLAPEKLVSPA 121
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
SK+F+ +Q+ + L+ AIDE HC S WGHDFRP+Y+ L L+++FP +P++ LTAT
Sbjct: 122 SKTFLQAVQEKH---GLSLFAIDEAHCISEWGHDFRPEYRQLKTLRSLFPKIPMIALTAT 178
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQS 241
AT +V D+ L ++ V F+RPNL+YEV+ K Q+ ++L + R + S
Sbjct: 179 ATERVRSDIIHQLTLDQPKVQITSFDRPNLYYEVQPK---QRQHYNQLFKFI--RHQTGS 233
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGL 283
GI+Y S + E++ L+ G+ YHA + +IAFG+
Sbjct: 234 GIVYCLSRRRVEEVAFRLKKDGISALPYHAGMSDGNRSDYQTRFLRDDVQVMVATIAFGM 293
Query: 284 GIDKPNVRFVIHHCLSKSMENFYQ 307
GIDKP++RFV+H+ L +++EN+YQ
Sbjct: 294 GIDKPDIRFVVHYDLPRNLENYYQ 317
>gi|123440598|ref|YP_001004592.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122087559|emb|CAL10340.1| ATP-dependent DNA helicase [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 616
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 171/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q IN L +D +++MPT S D + V+
Sbjct: 15 QVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A + A + + ++ + S +KLLY++PE+L
Sbjct: 75 ISLMKDQVDQLLAYGVG-----AGCLNSSQTREQQLAVMDGCRSGQIKLLYIAPERLVM- 128
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+SF+ +L + A +A+DE HC S WGHDFRP+Y+ L LK FP++P++ LTATA
Sbjct: 129 ESFLDQLHQWRPA----LLAVDEAHCISQWGHDFRPEYRALGQLKQRFPNLPVIALTATA 184
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L ++ ++ + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 185 DEATRGDIVRLLNLDQPLIQVSSFDRPNIRYTLVEKFKP------LDQLWRFVQDQ-RGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S + ED L++RGL V+AYHA L++ ++AFG
Sbjct: 238 SGIIYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 298 MGINKPNVRFVVHFDIPRTIESYYQ 322
>gi|332159828|ref|YP_004296405.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386310846|ref|YP_006006902.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
palearctica Y11]
gi|418243645|ref|ZP_12870111.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|420261107|ref|ZP_14763764.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|433548693|ref|ZP_20504742.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica IP 10393]
gi|318607629|emb|CBY29127.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325664058|gb|ADZ40702.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862578|emb|CBX72731.1| ATP-dependent DNA helicase recQ [Yersinia enterocolitica W22703]
gi|351776862|gb|EHB19136.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|404511396|gb|EKA25274.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|431790342|emb|CCO67782.1| ATP-dependent DNA helicase RecQ [Yersinia enterocolitica IP 10393]
Length = 616
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 171/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q IN L +D +++MPT S D + V+
Sbjct: 15 QVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A + A + + ++ + S +KLLY++PE+L
Sbjct: 75 ISLMKDQVDQLLAYGVG-----AGCLNSSQTREQQLAVMDGCRSGQIKLLYIAPERLVM- 128
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+SF+ +L + A +A+DE HC S WGHDFRP+Y+ L LK FP++P++ LTATA
Sbjct: 129 ESFLDQLHQWRPA----LLAVDEAHCISQWGHDFRPEYRALGQLKQRFPNLPVIALTATA 184
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L ++ ++ + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 185 DEATRGDIVRLLNLDQPLIQVSSFDRPNIRYTLVEKFKP------LDQLWRFVQDQ-RGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S + ED L++RGL V+AYHA L++ ++AFG
Sbjct: 238 SGIIYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 298 MGINKPNVRFVVHFDIPRTIESYYQ 322
>gi|402225561|gb|EJU05622.1| ATP-dependent DNA helicase, partial [Dacryopinax sp. DJM-731 SS1]
Length = 476
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 123/222 (55%), Gaps = 21/222 (9%)
Query: 111 LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170
L Y++PE L S L ++ LAR IDE HC S WG DFRP Y+ L IL+ +
Sbjct: 86 LCYITPEGLEARGSLRNLLSYLHNDNNLARFVIDEAHCVSQWGFDFRPAYEKLGILRREY 145
Query: 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA 230
P VPI+ LTATA +V D+ L I+ CV + FNRPNL Y VR KP + + +
Sbjct: 146 PGVPIMALTATANKRVSEDIIGCLGIKGCVRLSLSFNRPNLHYSVRKKPPG--NLVANIY 203
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN------------- 276
++ RN +GIIY S K+CE++ ELR+ GL YHA + N
Sbjct: 204 GFINSCHRNDAGIIYCLSRKKCEEVAAELRDTFGLPARHYHAGMNKNDRLRTQESWKHNE 263
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VR+VIHH L KS+E +YQ + G
Sbjct: 264 FKVIVATIAFGMGIDKPDVRYVIHHSLPKSLEGYYQETGRAG 305
>gi|219124697|ref|XP_002182634.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405980|gb|EEC45921.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 440
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 175/346 (50%), Gaps = 40/346 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS------------ 52
+ WS + L+ F + FR +Q +N + D +IM T S
Sbjct: 1 FQWSSSMMYHLQYSFRIRSFRDHQKEIVNATMSGDDVFVIMRTGGGKSLTYQLPALLEGR 60
Query: 53 ---DRVRSVLKSKFNLTDFRPNQLAAI--NIALLKKDAIIIMPTGKLLKKKKICLMTE-S 106
+V V+ +L + Q+ A N A + G ++ ++ + +
Sbjct: 61 GPSAQVTFVISPLLSLIQDQEEQMNAFCPNSATSFSSGLT---GGNAEHARRWSMVRDPT 117
Query: 107 SSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
+ + L++V+PEK+ KS ++LQK++ G L R +DE HC S +GHDFRPDY L IL
Sbjct: 118 AGMCLVFVTPEKVHKSGKLKSELQKLHDQGRLGRFVVDEAHCVSQYGHDFRPDYAQLGIL 177
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCV-VIKAPFNRPNLFYEVRIKPAAQKDC 225
K FP +P++ +TATA+ +V DV ++L++ ++ NRPNL Y VR KP ++
Sbjct: 178 KRQFPSIPMIAVTATASDRVREDVCQILRLGTRYRFFRSTANRPNLQYSVRPKPDSKDGI 237
Query: 226 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL------------ 273
L +A + +GI+YT S K+ + + + L G+ +YH+ +
Sbjct: 238 LANMAAFIQEHHAKDAGIVYTFSKKDADTVADALCQYGIVARSYHSDVSPTNKEYIHRSW 297
Query: 274 ---ESNV---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
E+ V +IAFGLGI+KP+VRFV+HH +SK++E +YQ S G
Sbjct: 298 MRNETQVVVATIAFGLGINKPDVRFVLHHTISKTLEAYYQESGRAG 343
>gi|378581806|ref|ZP_09830449.1| ATP-dependent DNA helicase [Pantoea stewartii subsp. stewartii
DC283]
gi|377815544|gb|EHT98656.1| ATP-dependent DNA helicase [Pantoea stewartii subsp. stewartii
DC283]
Length = 608
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/327 (33%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS----VLK 60
+ VL+ F FRP Q A IN AL +D +++MPT Y VR V+
Sbjct: 13 AQQVLQDTFGYQQFRPGQQAIINEALNGRDCLVVMPTGGGKSLCYQIPALVREGLTLVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T +++ + + +KLLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTMTREQQQNVMADCRNGRVKLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L A +A+DE HC S WGHDFRP+Y L ++ FPD+P++ LTA
Sbjct: 128 MD-NFLESLAHWQPA----MLAVDEAHCISQWGHDFRPEYGALGQMRQRFPDLPVMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA LD+ +L ++D ++ + F+RPN+ Y + + KP Q L + D R
Sbjct: 183 TADETTRLDIVNLLHMQDPLIQISSFDRPNIRYTLVEKFKPTEQ--LLRYVQDQ-----R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIA 280
+ GIIY S + ED L++RGL V AYHA ++S ++A
Sbjct: 236 GKCGIIYCNSRAKVEDTAARLQSRGLSVGAYHAGIDSAQRARVQEAFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|225010696|ref|ZP_03701166.1| ATP-dependent DNA helicase, RecQ family [Flavobacteria bacterium
MS024-3C]
gi|225005249|gb|EEG43201.1| ATP-dependent DNA helicase, RecQ family [Flavobacteria bacterium
MS024-3C]
Length = 647
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 117/328 (35%), Positives = 166/328 (50%), Gaps = 88/328 (26%)
Query: 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----------LLKKKK----- 99
+R+ LK F ++F+ Q A I L KK + +IMPTG LL++
Sbjct: 8 LRAALKQYFGFSEFKGRQEAVIKNVLAKKHSFVIMPTGGGKSMCYQLPALLQEGTAIVVS 67
Query: 100 --ICLMTE------------------SSSL-----------------KLLYVSPEKLAKS 122
I LM +SSL KLLYV+PE L K
Sbjct: 68 PLIALMKNQVDAIRGVSANPGVAHVLNSSLTKTEIKQVKSDVVNGITKLLYVAPESLTKE 127
Query: 123 K--SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLS-ILKTMFPDVPILGLT 179
+ +F+ + ++ +A+DE HC S WGHDFRP+Y+ L I+ + ++PI+GLT
Sbjct: 128 ENVAFLNTV-------TVSFVAVDEAHCISEWGHDFRPEYRNLQRIIDRVGANIPIIGLT 180
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS--RRF 237
ATAT KV D+ K L I D V K+ FNRPNLFYEVR P Q + AD++ ++
Sbjct: 181 ATATPKVQEDIIKNLGITDATVFKSSFNRPNLFYEVR--PKTQ----NVEADIIRFVKQH 234
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SI 279
+SGIIY S K+ E+L + L+ G+ YHA ++ +I
Sbjct: 235 VGKSGIIYCLSRKKVEELAQILQVNGVSAVPYHAGFDTKTRSKYQDMFLMEEVDVVVATI 294
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
AFG+GIDKP+VR+VIHH + KS+E++YQ
Sbjct: 295 AFGMGIDKPDVRYVIHHDIPKSIESYYQ 322
>gi|89890375|ref|ZP_01201885.1| ATP-dependent DNA helicase RecQ [Flavobacteria bacterium BBFL7]
gi|89517290|gb|EAS19947.1| ATP-dependent DNA helicase RecQ [Flavobacteria bacterium BBFL7]
Length = 731
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 120/325 (36%), Positives = 164/325 (50%), Gaps = 46/325 (14%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DRVRSVLKSKFNL 65
LK F FR Q I L K+D +IMPT S +++ S L
Sbjct: 12 LKKYFGFDQFRGLQKKVITSLLNKEDVFVIMPTGGGKSLCYQLPALMQEGTAIVVSP--L 69
Query: 66 TDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS--LKLLYVSPEKLAKSK 123
NQ+ AI + D + + L K + + S+ KLLYV+PE L K +
Sbjct: 70 IALMKNQVDAIR-GISDHDGVAHVLNSSLSKTDVQQVKNDISNGITKLLYVAPESLTKEE 128
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLTATA 182
K ++ +A+DE HC S WGHDFRP+Y+ L I+ + +PI+GLTATA
Sbjct: 129 YV-----DFLKGEKISFLAVDEAHCISEWGHDFRPEYRNLRKIIDRIDERIPIIGLTATA 183
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS--RRFRNQ 240
T KV D+ K LQI D +A FNRPNLFYEVR K Q D AD+ ++ +
Sbjct: 184 TPKVQEDILKNLQISDATTYQASFNRPNLFYEVRPK-TGQVD-----ADITRFIKQHEGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282
SGI+Y S K E+L + L+ G+ YHA L++ +IAFG
Sbjct: 238 SGIVYCLSRKRVEELAQVLQVNGIDAVPYHAGLDAKTRVLHQDKFLMEDCDVVVATIAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 298 MGIDKPDVRFVIHHDIPKSIESYYQ 322
>gi|429091857|ref|ZP_19154510.1| ATP-dependent DNA helicase RecQ [Cronobacter dublinensis 1210]
gi|429099036|ref|ZP_19161142.1| ATP-dependent DNA helicase RecQ [Cronobacter dublinensis 582]
gi|426285376|emb|CCJ87255.1| ATP-dependent DNA helicase RecQ [Cronobacter dublinensis 582]
gi|426743518|emb|CCJ80623.1| ATP-dependent DNA helicase RecQ [Cronobacter dublinensis 1210]
Length = 609
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/333 (32%), Positives = 171/333 (51%), Gaps = 47/333 (14%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
Y + VL+ F FRP Q I+ L +D +++MPT Y V++
Sbjct: 7 YSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKTG 66
Query: 58 ---VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYV 114
V+ +L + +QL A +A A + T +++ + S ++LLY+
Sbjct: 67 LTVVVSPLISLMKDQVDQLLANGVA-----AACLNSTQSRDEQQAVMAGCRSGQVRLLYI 121
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PE+L +F+ L LA +A+DE HC S WGHDFRP+Y L L+ FP VP
Sbjct: 122 APERLMMD-NFIDSLSYWN----LAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVP 176
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADL 232
+ LTATA D+ ++L +ED ++ + F+RPN+ Y + + KP LD+L
Sbjct: 177 FMALTATADDTTRRDIVRLLGLEDPLIEISSFDRPNIRYMLMEKFKP------LDQLMRY 230
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------- 277
+ + R +SGIIY S + ED L++RG+ +AYHA LE V
Sbjct: 231 VQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQI 289
Query: 278 ---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 290 VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|425470694|ref|ZP_18849554.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9701]
gi|389883511|emb|CCI36062.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9701]
Length = 701
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 112/328 (34%), Positives = 158/328 (48%), Gaps = 73/328 (22%)
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----------LLKKKK--- 99
D + LK F FRPNQ I AL +D ++IMPTG L+KK
Sbjct: 5 DSLEKALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 100 ----ICLMTES--------------------------------SSLKLLYVSPEKLAKSK 123
I LM + +KLLYV+PE+L S
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPERLL-SP 123
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
SF+ L + LA +A+DE HC S WGHDFRP+Y+ + ++ FP VPIL LTATAT
Sbjct: 124 SFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATAT 183
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
+V D+ + L + D + A FNRPNL+YEV+ K + L + + + SGI
Sbjct: 184 QQVREDIIQQLGLRDTSIHIASFNRPNLYYEVQPKTSKSYQQLYQYI-----KGQKGSGI 238
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGI 285
+Y S K + + E+L+ G+ YHA +E +IAFG+GI
Sbjct: 239 VYCISRKTVDQVAEQLQKDGINALPYHAGMEDRERSQNQTRFIRDDVQIMVATIAFGMGI 298
Query: 286 DKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+KP+VRFV+H+ L +++E +YQ S G
Sbjct: 299 NKPDVRFVVHYDLPRNLEGYYQESGRAG 326
>gi|404379202|ref|ZP_10984268.1| ATP-dependent DNA helicase RecQ [Simonsiella muelleri ATCC 29453]
gi|294483547|gb|EFG31232.1| ATP-dependent DNA helicase RecQ [Simonsiella muelleri ATCC 29453]
Length = 602
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/334 (34%), Positives = 171/334 (51%), Gaps = 42/334 (12%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRS 57
S + +L+ F +FR Q +N +A+++MPT S + V
Sbjct: 3 SSTAQRILQDTFGYPEFRGKQAEIVNTIAQGGNALVLMPTGGGKSLCYQIPALMREGVAI 62
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPE 117
V+ L D +Q+A + +A + A+ + +++ + S SLKLLYVSPE
Sbjct: 63 VVSPLIALMD---DQVANLRVAGVHAAAVHSGTPPETIRQ--LADDIHSGSLKLLYVSPE 117
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
+L S+ F+ L ++ AIDE HC S WGHDFRP+YQ L IL +P+VP +
Sbjct: 118 RLV-SERFLRFLDNTQ----VSLFAIDEAHCVSQWGHDFRPEYQQLGILADRYPNVPRIA 172
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATA + D++ LQ+ D + F+RPN++Y+V K +K +L D + ++
Sbjct: 173 LTATADAETRADMKYYLQLTDAPEFVSSFDRPNIYYQVIEKHNGKK----QLLDFIKKQM 228
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL--------------ESNV----SI 279
Q+GIIY S K ED+ E L GL YHA L E N+ ++
Sbjct: 229 HCQNGIIYCLSRKSVEDVAEFLCENGLNALPYHAGLSLEIRQQNQYRFTHEDNIIVVATV 288
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
AFG+GIDKP+VRFV H + +S+E+FYQ S G
Sbjct: 289 AFGMGIDKPDVRFVAHLDMPQSIEHFYQESGRAG 322
>gi|398793349|ref|ZP_10553767.1| ATP-dependent DNA helicase RecQ [Pantoea sp. YR343]
gi|398210961|gb|EJM97590.1| ATP-dependent DNA helicase RecQ [Pantoea sp. YR343]
Length = 608
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/327 (33%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS----VLK 60
+ VL+ F FRP Q I AL +D +++MPT Y VR V+
Sbjct: 13 AQQVLQDTFGYQQFRPGQQNIIETALSGRDCLVVMPTGGGKSLCYQIPALVREGLTLVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T +++++ + LKLLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQTREQQQQVFADCRTGKLKLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L + +A+DE HC S WGHDFRP+Y + L+ FPD+P++ LTA
Sbjct: 128 MD-NFLDSLHQWNPV----MLAVDEAHCISQWGHDFRPEYGSIGQLRQHFPDLPVMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ +LQ++D ++ + F+RPN+ Y + + KP Q L + D R
Sbjct: 183 TADETTRNDIAHLLQMDDPLIQISSFDRPNIRYTLVEKFKPTEQ--LLRYVQDQ-----R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIA 280
+SGIIY S + ED L++RGL V AYHA ++S ++A
Sbjct: 236 GKSGIIYCNSRAKVEDTAARLQSRGLSVGAYHAGIDSAQRASVQEAFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|294899983|ref|XP_002776841.1| ATP-dependent DNA helicase recQ, putative [Perkinsus marinus ATCC
50983]
gi|239884042|gb|EER08657.1| ATP-dependent DNA helicase recQ, putative [Perkinsus marinus ATCC
50983]
Length = 567
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 165/336 (49%), Gaps = 51/336 (15%)
Query: 20 NLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------------DRVRSVLKSKFN 64
N FRPNQL IN L K+D ++MPT S V+ +
Sbjct: 139 NQGGFRPNQLETINAVLSKRDVFLVMPTGGGKSLCYQIPALVNHEARRGGTTVVICPLVS 198
Query: 65 LTDFRPNQLAAINI--ALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
L + QL+ I A L A MP + KK S L++L+V+PE+L+ S
Sbjct: 199 LILDQEAQLSQCGILCAGLSSSAAHTMPPVETFKK------LFSGKLRVLFVTPERLSAS 252
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
K + L +Y+ L +DE HC S WGHDFR DY L+ ++ FP VPIL +TATA
Sbjct: 253 KRLLDLLAGLYRNSLLHGFVVDEAHCVSQWGHDFREDYLLLANIRKTFPGVPILAMTATA 312
Query: 183 TTKVMLDVQKMLQI----EDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD---LMSR 235
VM D+ MLQ+ VVI+ NR N+ Y V +P+ K L+ LA +S
Sbjct: 313 KPDVMKDI--MLQLGMPTSSTVVIRTSLNRTNISYSVVKRPSKGK-MLESLAGKIRELSG 369
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------ 277
+ SGIIY S K+CE + LR ++ + YHA L ++
Sbjct: 370 KDGRGSGIIYCMSKKDCEQVSTGLRAYSIKAAVYHADLPQSIRDTNQKLWMDNEIQVMAA 429
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GI+K +VRFVIH+ + K++E FYQ S G
Sbjct: 430 TVAFGMGINKRDVRFVIHYSMPKTLEAFYQESGRAG 465
>gi|343085469|ref|YP_004774764.1| ATP-dependent DNA helicase RecQ [Cyclobacterium marinum DSM 745]
gi|342354003|gb|AEL26533.1| ATP-dependent DNA helicase RecQ [Cyclobacterium marinum DSM 745]
Length = 725
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/325 (33%), Positives = 174/325 (53%), Gaps = 40/325 (12%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDY---------PWSDRVRSVLKS 61
V+ LK F FR NQ ++ L + +IMPT S++ +++ S
Sbjct: 5 VKDNLKKIFGFNQFRGNQQLIVDNILKGNNTFVIMPTGAGKSLCYQLPAVSNKGTAIVIS 64
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAK 121
L NQ+ +N + +A + T + ++ + KLLYV+PE L K
Sbjct: 65 P--LIALMKNQVDQLNSFGI--NAHFLNSTLSKTESNRVKGEVSAGLTKLLYVAPESLTK 120
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLTA 180
++ K K+ ++ +AIDE HC S WGHDFRP+Y+ + SI+ + ++P++ LTA
Sbjct: 121 EENV-----KFLKSADISFVAIDEAHCISEWGHDFRPEYRKIKSIIAQIGDNLPVIALTA 175
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TAT KV D+Q+ LQ+E+ + K+ FNR NL+YEVR P + + E+ + + + +
Sbjct: 176 TATPKVQQDIQRNLQMEEADLFKSSFNRTNLYYEVR--PKVKSETKKEIIKYIKSQ-KGK 232
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282
SGIIY S K+ ++ E L+ G+ + YHA L+ +V +IAFG
Sbjct: 233 SGIIYCLSRKKVTEIAELLKVNGINAAPYHAGLDGHVRVKNQDDFLNEEVDVIVATIAFG 292
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GIDKP+VR+VIH+ + KS+E +YQ
Sbjct: 293 MGIDKPDVRYVIHYDVPKSLEGYYQ 317
>gi|167381749|ref|XP_001735842.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165902008|gb|EDR27948.1| hypothetical protein EDI_175610 [Entamoeba dispar SAW760]
Length = 765
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/310 (33%), Positives = 153/310 (49%), Gaps = 52/310 (16%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC------ 101
++ W +RV VL F+ R Q IN L +A+++MPTG K +C
Sbjct: 367 NFHWRERVDEVLHKIFHHETLRLLQYPVINAILAGHNALVLMPTGG---GKSLCYQLPSL 423
Query: 102 -------------------LMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIA 142
+ T + +K++YV+PE L+ S ++K+Y G + +
Sbjct: 424 FKDGYTLYSPENIDIFINDIETHKTKIKIVYVAPEFLSSSLKMNEVMKKLYDQGLFSYLV 483
Query: 143 IDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVI 202
IDE HC S WGHDFR Y L + FP V + TATAT +V D+ L +E+ +V
Sbjct: 484 IDEAHCISQWGHDFRQSYVELREFRKKFPSVQTIMFTATATERVKNDILLSLGLEEAIVF 543
Query: 203 KAPFNRPNLFYEVRIK-PAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRN 261
FNRPNL YE+R K P+ + D ++ NQ GI++ S K+CE+L + L N
Sbjct: 544 NQTFNRPNLRYEMRFKLPSVEFDIA-----CYIQQHPNQCGIVFCLSKKDCENLSKFLVN 598
Query: 262 RGLRVSAYHAKLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSME 303
G+R + YHA L+ ++AFG+GIDKP+VRFVIH + S+E
Sbjct: 599 YGIRATYYHAGLDPKRRKQVQNDWMNGIFLVVCATVAFGMGIDKPDVRFVIHQTMPSSIE 658
Query: 304 NFYQVSIAFG 313
++Q + G
Sbjct: 659 QYFQEAGRAG 668
>gi|395801803|ref|ZP_10481058.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. F52]
gi|395435992|gb|EJG01931.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. F52]
Length = 731
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 117/327 (35%), Positives = 170/327 (51%), Gaps = 41/327 (12%)
Query: 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DRVRSVLK 60
+ LK F + F+ Q I L K+ +IMPT S +++
Sbjct: 7 EIHKELKKYFGFSQFKGLQEQVITSILDGKNTFVIMPTGGGKSLCYQLPALIQEGTAIVV 66
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS--LKLLYVSPEK 118
S L NQ+ AI +L ++ I + L K + + + +S KLLYV+PE
Sbjct: 67 SP--LIALMKNQVDAIR-SLSSENGIAHVLNSSLTKTEIAQVKKDITSGLTKLLYVAPES 123
Query: 119 LAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGL 178
L K + ++ LQ + ++ +AIDE HC S WGHDFRP+Y+ L + VPI+GL
Sbjct: 124 LTK-EEYVAFLQSV----PISFVAIDEAHCISEWGHDFRPEYRNLRNIIKQLGKVPIIGL 178
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFR 238
TATAT KV D+ K L + D KA FNRPNL+YEVR K K+ ++ + ++ +
Sbjct: 179 TATATPKVQEDILKNLDMADANTFKASFNRPNLYYEVRTKT---KNIESDIIRFI-KQHK 234
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S K+ E + E L+ G+ YHA L++ +IA
Sbjct: 235 GKSGIIYCLSRKKVESIAEVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIA 294
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 295 FGMGIDKPDVRFVIHHDIPKSLESYYQ 321
>gi|334366676|ref|ZP_08515601.1| ATP-dependent DNA helicase RecQ family protein [Alistipes sp. HGB5]
gi|313157180|gb|EFR56610.1| ATP-dependent DNA helicase RecQ family protein [Alistipes sp. HGB5]
Length = 730
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/326 (34%), Positives = 163/326 (50%), Gaps = 50/326 (15%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFN 64
LK F + F+ NQ A I L D ++MPT S D V V+
Sbjct: 13 LKEYFGFSSFKGNQEAVIRNVLEGNDTFVLMPTGGGKSLCYQLPALIMDGVAIVISP--- 69
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE---SSSLKLLYVSPEKLAK 121
L NQ+ A+ D+ I L K + + S KLLY +PE L K
Sbjct: 70 LIALMKNQVDAMRT--FSADSGIAHFLNSSLNKTAVAQVRADVLSGKTKLLYFAPESLTK 127
Query: 122 SK--SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
+F+ K++ ++ AIDE HC S WGHDFRP+Y+ + + P++ LT
Sbjct: 128 EDNVAFLHKIK-------VSFYAIDEAHCISEWGHDFRPEYRRIRPIINEIGPAPLIALT 180
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATAT KV LD+QK L + D V K+ FNRPNL+YE+R K +D + + ++
Sbjct: 181 ATATPKVQLDIQKNLGMSDASVFKSSFNRPNLYYEIRPKHNVDRDIIRFI-----KQNEG 235
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 281
+SGIIY S K+ E+L E L G++ AYHA +++ +IAF
Sbjct: 236 KSGIIYCLSRKKVEELTELLVANGIKALAYHAGMDAATRAANQDHFLMERADVIVATIAF 295
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GIDKP+VR+VIH+ + KS+E +YQ
Sbjct: 296 GMGIDKPDVRYVIHYDIPKSLEGYYQ 321
>gi|21227319|ref|NP_633241.1| ATP-dependent DNA helicase [Methanosarcina mazei Go1]
gi|20905673|gb|AAM30913.1| ATP-dependent DNA helicase [Methanosarcina mazei Go1]
Length = 896
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 168/340 (49%), Gaps = 49/340 (14%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRS 57
S R+ SVL+ F T FRP Q I L +KD ++MPT S D V
Sbjct: 22 SSRMHSVLRQYFGYTAFRPLQEEIIRDVLDRKDVFVLMPTGGGKSICYQLPSLLLDGVTV 81
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPE 117
V+ +L + + L A IA A + T + + + + LK+LY++PE
Sbjct: 82 VVSPLISLMKDQVDGLEANGIA-----AACMNSTQSPRENRDVKNAFLENRLKVLYIAPE 136
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL---KTMFPDVP 174
+L +F K G ++ AIDE HC S WGHDFRP+Y+ L +L K FPDVP
Sbjct: 137 RLMMPGTFA-----FLKKGKVSLFAIDEAHCISEWGHDFRPEYRKLKLLRDPKNGFPDVP 191
Query: 175 ILGLTATATTKVMLDVQKMLQIE---DCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
++ LTATAT +V D+ L + + A FNR NL+YEVR K KD E+ D
Sbjct: 192 VIALTATATERVKKDIVSQLGLNIDPEKGPYVASFNRSNLYYEVRPK----KDTFSEITD 247
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN--------------- 276
+ R R ++GIIY S E L +L G R YHA L +
Sbjct: 248 YLLRH-RGEAGIIYCQSRNNVETLTRKLNLAGFRALPYHAGLSDSERSRNQEMFIRDDVD 306
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GI+K NVRFVIH+ L +++E++YQ + G
Sbjct: 307 IIVATIAFGMGINKSNVRFVIHYDLPRNLESYYQETGRGG 346
>gi|198276249|ref|ZP_03208780.1| hypothetical protein BACPLE_02441 [Bacteroides plebeius DSM 17135]
gi|198270691|gb|EDY94961.1| ATP-dependent DNA helicase RecQ [Bacteroides plebeius DSM 17135]
Length = 611
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/322 (33%), Positives = 169/322 (52%), Gaps = 31/322 (9%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLT 66
+++ LKS F T FRP Q I+ L KKDA+++MPT S ++ ++L +
Sbjct: 3 EQMLKTLKSYFGYTSFRPLQEKIISTILQKKDALVLMPTGGGKSMCYQLPALLMEGTTVV 62
Query: 67 DFRPNQLAAINIALLKKDAII---IMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSK 123
L + L+ + I+ + T ++ +KLLY+SPE+L
Sbjct: 63 VSPLISLMKDQVESLQANGIVARALNSTNDDATNAQLYFECLQGRVKLLYISPERL---- 118
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
M+++ + + ++ AIDE HC S WGHDFRP+Y L ++ FP+VP++ LTATA
Sbjct: 119 --MSEMNYLLRDINISLFAIDEAHCISHWGHDFRPEYTQLKAIRQYFPNVPVVALTATAD 176
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
D+ + L++ + + + F+RPNL EV+ + QK+ + + + RR RN+SGI
Sbjct: 177 KITREDIIRQLEMRNPEIFISSFDRPNLSLEVK-RGYQQKEKIKAIVKFL-RRHRNESGI 234
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGI 285
IY S E + + L G V+AYHA + + +IAFG+GI
Sbjct: 235 IYCMSRNGTEKVAQLLEKEGFDVAAYHAGMSNEQREITQDDFINDRVQIICATIAFGMGI 294
Query: 286 DKPNVRFVIHHCLSKSMENFYQ 307
DK NVR+VIH+ L KS+ENFYQ
Sbjct: 295 DKSNVRWVIHYNLPKSIENFYQ 316
>gi|399024201|ref|ZP_10726247.1| ATP-dependent DNA helicase RecQ [Chryseobacterium sp. CF314]
gi|398081075|gb|EJL71860.1| ATP-dependent DNA helicase RecQ [Chryseobacterium sp. CF314]
Length = 734
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 169/322 (52%), Gaps = 42/322 (13%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DRVRSVLKSKFNL 65
LK F + F+ Q I L KD ++MPT S +++ S L
Sbjct: 12 LKKYFGFSTFKGQQEQIIENLLDGKDIFVLMPTGGGKSLCYQLPALISEGTAIVVSP--L 69
Query: 66 TDFRPNQLAAINIALLKKDAIIIMPTGKLLKK--KKICLMTESSSLKLLYVSPEKLAKSK 123
NQ+ A+N L D + + L K K++ +S KLLYV+PE L K +
Sbjct: 70 IALMKNQVDAVN-GLSSDDGVAHVLNSSLNKTQTKQVFDDIKSGKTKLLYVAPESLIK-E 127
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
++ L+++ ++ AIDE HC S WGHDFRP+Y+ L ++ +VP++ LTATAT
Sbjct: 128 DYLDFLKEV----TISFFAIDEAHCISEWGHDFRPEYRNLKLIIDKIANVPVIALTATAT 183
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
KV D+QK L + + +V K FNRPNL+YEVR K K E+ +++ + +SGI
Sbjct: 184 PKVQDDIQKTLGMANALVFKESFNRPNLYYEVRPKVNVDK----EIVKFINQH-KGKSGI 238
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGI 285
+Y S ++ E+ + L+ G+ YHA L+ V +IAFG+GI
Sbjct: 239 VYCLSRRKVEEFAQLLQVNGINALPYHAGLDQKVRVANQDKFLMEEVDVIVATIAFGMGI 298
Query: 286 DKPNVRFVIHHCLSKSMENFYQ 307
DKP+VRFVIH+ KS+E++YQ
Sbjct: 299 DKPDVRFVIHYDFPKSLESYYQ 320
>gi|390945503|ref|YP_006409263.1| ATP-dependent DNA helicase RecQ [Alistipes finegoldii DSM 17242]
gi|390422072|gb|AFL76578.1| ATP-dependent DNA helicase RecQ [Alistipes finegoldii DSM 17242]
Length = 730
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/326 (34%), Positives = 163/326 (50%), Gaps = 50/326 (15%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFN 64
LK F + F+ NQ A I L D ++MPT S D V V+
Sbjct: 13 LKEYFGFSSFKGNQEAVIRNVLEGNDTFVLMPTGGGKSLCYQLPALIMDGVAIVISP--- 69
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE---SSSLKLLYVSPEKLAK 121
L NQ+ A+ D+ I L K + + S KLLY +PE L K
Sbjct: 70 LIALMKNQVDAMRT--FSADSGIAHFLNSSLNKTAVAQVRADVLSGKTKLLYFAPESLTK 127
Query: 122 SK--SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
+F+ K++ ++ AIDE HC S WGHDFRP+Y+ + + P++ LT
Sbjct: 128 EDNVAFLHKIK-------VSFYAIDEAHCISEWGHDFRPEYRRIRPIINEIGPAPLIALT 180
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATAT KV LD+QK L + D V K+ FNRPNL+YE+R K +D + + ++
Sbjct: 181 ATATPKVQLDIQKNLGMSDASVFKSSFNRPNLYYEIRPKHNVDRDIIRFI-----KQNEG 235
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 281
+SGIIY S K+ E+L E L G++ AYHA +++ +IAF
Sbjct: 236 KSGIIYCLSRKKVEELTELLVANGIKALAYHAGMDAATRAANQDHFLMERADVIVATIAF 295
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GIDKP+VR+VIH+ + KS+E +YQ
Sbjct: 296 GMGIDKPDVRYVIHYDIPKSLEGYYQ 321
>gi|348027736|ref|YP_004870422.1| ATP-dependent DNA helicase [Glaciecola nitratireducens FR1064]
gi|347945079|gb|AEP28429.1| ATP-dependent DNA helicase [Glaciecola nitratireducens FR1064]
Length = 627
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 170/322 (52%), Gaps = 43/322 (13%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKF 63
+LK F ++FRP Q+ I+ L +D +I++PT S + + V+
Sbjct: 38 ILKDTFGYSEFRPGQMEVIDKVLNGQDTLILLPTGGGKSLCYQVPALVLEGITIVVSPLI 97
Query: 64 NLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSK 123
+L + QL A + +A + + + +KI + L LLYV+PE+L +S
Sbjct: 98 SLMQDQVQQLTAQGV-----NAAYLNSSQDAEQSQKITEQLYNGELDLLYVAPERLLQS- 151
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
F+ LQ++ ++ IA+DE HC S WGHDFR DY+ L LK+ F +VP + LTATA
Sbjct: 152 YFLNSLQRVN----VSLIAVDEAHCVSHWGHDFRQDYRQLGRLKSHFDNVPFIALTATAD 207
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
+D+Q LQ+++ V K F+RPN+ Y + K +++ + ++ +GI
Sbjct: 208 HATQVDIQHQLQLDNPFVFKGGFDRPNIRYNLLAKYKG----FEQVVTFVKQQ-EGAAGI 262
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGI 285
+Y S + +DL + L++ G++ AYHA ++ ++AFG+GI
Sbjct: 263 VYCNSRAKVDDLTQRLQSAGIKCDAYHAGHDTATREFVQTQFLKDDLQVVVATVAFGMGI 322
Query: 286 DKPNVRFVIHHCLSKSMENFYQ 307
+K NVRFV+HH + +S+E++YQ
Sbjct: 323 NKSNVRFVVHHDVPRSVESYYQ 344
>gi|255531959|ref|YP_003092331.1| ATP-dependent DNA helicase RecQ [Pedobacter heparinus DSM 2366]
gi|255344943|gb|ACU04269.1| ATP-dependent DNA helicase RecQ [Pedobacter heparinus DSM 2366]
Length = 729
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/324 (35%), Positives = 168/324 (51%), Gaps = 45/324 (13%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFN 64
L++ F +F+ +Q + I L KK+ +IMPT S + V+
Sbjct: 11 LQTFFGFDNFKGDQESIITNVLEKKNTFVIMPTGGGKSICYQLPALINEGTAIVISPLIA 70
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE--SSSLKLLYVSPEKLAKS 122
L + +QL A D+I L K + + ++ + KLLYV+PE L+K
Sbjct: 71 LMKNQVDQLRAFG----GSDSIAHFLNSSLNKTEITQVKSDLLNGQTKLLYVAPESLSKQ 126
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLTAT 181
+ K+ K ++ +A+DE HC S WGHDFRP+Y+ + ++ + +PI+ LTAT
Sbjct: 127 DNI--DFLKLIK---ISFVAVDEAHCISEWGHDFRPEYRKIRQVISGLGEGIPIIALTAT 181
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQS 241
AT KV D+ K L + D + K+ FNRPNLFYE+R K +D L E+ + +S
Sbjct: 182 ATPKVQQDIIKNLGMSDATLFKSSFNRPNLFYEIRPK----RDVLKEIIRYIKYN-TGKS 236
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGL 283
GIIY S K+ E++ E L G++ YHA LE V +IAFG+
Sbjct: 237 GIIYCLSRKKVEEVAESLNLNGIKALPYHAGLEPKVRAETQDKFLMEDVEVIVATIAFGM 296
Query: 284 GIDKPNVRFVIHHCLSKSMENFYQ 307
GIDKP+VRFVIHH + KSME +YQ
Sbjct: 297 GIDKPDVRFVIHHDIPKSMEGYYQ 320
>gi|317046403|ref|YP_004114051.1| ATP-dependent DNA helicase RecQ [Pantoea sp. At-9b]
gi|316948020|gb|ADU67495.1| ATP-dependent DNA helicase RecQ [Pantoea sp. At-9b]
Length = 607
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/327 (33%), Positives = 167/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS----VLK 60
+ VL+ F FRP Q I AL +D +++MPT Y VR V+
Sbjct: 13 AQQVLQDTFGYQQFRPGQQTIIETALAGRDCLVVMPTGGGKSLCYQIPALVREGLTLVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T +++++ S LKLLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQTREEQQQVFADCRSGRLKLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP++P++ LTA
Sbjct: 128 MD-NFLDSLHHWNPV----MLAVDEAHCISQWGHDFRPEYGALGQLRQRFPELPVMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ +LQ+ D ++ + F+RPN+ Y + + KP Q L + D R
Sbjct: 183 TADETTRNDIAHLLQMHDPLIQISSFDRPNIRYTLVEKFKPTEQ--LLRYVQDQ-----R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIA 280
+SGIIY S + ED L++RGL V AYHA ++S ++A
Sbjct: 236 GKSGIIYCNSRAKVEDTAARLQSRGLSVGAYHAGIDSAQRARVQEAFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|372223763|ref|ZP_09502184.1| RecQ familyATP-dependent DNA helicase [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 733
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 119/330 (36%), Positives = 173/330 (52%), Gaps = 46/330 (13%)
Query: 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN--- 64
++ LK F + F+ Q I+ L D +IMPT S ++ +++K
Sbjct: 7 ELQEALKKYFGFSQFKGLQEQVISNILGDNDTFVIMPTGGGKSLCYQLPALMKEGTAIVV 66
Query: 65 --LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKK--KKICLMTESSSLKLLYVSPEKLA 120
L NQ+ AI + ++ I + L K KK+ + KLLYV+PE L
Sbjct: 67 SPLIALMKNQVDAIR-GVSSEEGIAHVLNSSLNKTEIKKVKSDITNGVTKLLYVAPESLT 125
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLT 179
K ++ + + ++ +A+DE HC S WGHDFRP+Y+ L I+ + ++PI+GLT
Sbjct: 126 KEENI-----EFFNGVTISFVAVDEAHCISEWGHDFRPEYRNLRKIISRLGDNIPIIGLT 180
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATAT KV D+ K L + D V KA FNRPNLFYEVR K +D AD++ RF
Sbjct: 181 ATATPKVQEDIIKNLGMVDAKVFKASFNRPNLFYEVRPKTK----NVD--ADII--RFVK 232
Query: 240 Q----SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------ 277
Q SGI+Y S K+ E+L + L+ G+ YHA ++
Sbjct: 233 QNSGKSGIVYCLSRKKVEELAQVLQVNGISAVPYHAGFDAKTRAKYQDMFLMEDVDVVVA 292
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 293 TIAFGMGIDKPDVRFVIHHDIPKSIESYYQ 322
>gi|422302785|ref|ZP_16390144.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9806]
gi|389787941|emb|CCI16794.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9806]
Length = 703
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 160/328 (48%), Gaps = 73/328 (22%)
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----------LLKKKK--- 99
D + LK F FRPNQ I AL +D ++IMPTG L+KK
Sbjct: 5 DSLEKALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 100 ----ICLMTES--------------------------------SSLKLLYVSPEKLAKSK 123
I LM + +KLLYV+PE+L S
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPERLL-SP 123
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
SF+ L + LA +A+DE HC S WGHDFRP+Y+ + ++ FP VPIL LTATAT
Sbjct: 124 SFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATAT 183
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
+V D+ + L + D + A FNRPNL+YEV+ K + L + + + +GI
Sbjct: 184 QQVREDIIQQLGLRDTSIHIASFNRPNLYYEVQPKTSKSYQQLYQYI-----KGQKGAGI 238
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLE----SN--------------VSIAFGLGI 285
+Y S K + + E+L+ G+ YHA +E SN +IAFG+GI
Sbjct: 239 VYCISRKTVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRDDVQIMVATIAFGMGI 298
Query: 286 DKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+KP+VRFVIH+ L +++E +YQ S G
Sbjct: 299 NKPDVRFVIHYDLPRNLEGYYQESGRAG 326
>gi|145496268|ref|XP_001434125.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124401248|emb|CAK66728.1| unnamed protein product [Paramecium tetraurelia]
Length = 889
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 152/328 (46%), Gaps = 66/328 (20%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG-------------- 92
T + W +V LK F F+ NQ A IN L KD + MPTG
Sbjct: 70 TQFDWDAKVLEALKGAFGKEQFKANQKAIINCVLAGKDVFVCMPTGYGKSITFQIPAFVE 129
Query: 93 -----------------------------------KLLKKKKICLMTESSSLKLLYVSPE 117
+LL ++I +KL+Y +PE
Sbjct: 130 NGVSIVVMPLISLIFDQVQYLTSLGIPSLNMSGQNRLLTAQQIL----DQKIKLIYTTPE 185
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
K+ KS+ F L ++ + R IDE HC S WG DFRPDY LS ++ +P++PI+
Sbjct: 186 KIEKSEQFKQILGDLFNRKLIKRFVIDEAHCVSKWGRDFRPDYLKLSNVRNEYPNIPIIA 245
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATA +V D+ +LQI+ C+ +++ FNRPNL YEVR + +K + E+ + +++ +
Sbjct: 246 LTATAPEEVKEDIIDVLQIKGCLYLQSSFNRPNLVYEVRCREEFKK-AVQEIKEFINQTY 304
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES------------NVSIAFGLGI 285
QSGIIY + EC+ L + L G+ YHA L N +
Sbjct: 305 PKQSGIIYCLTQSECQTLSQNLIYHGIGSDFYHAGLTEKERHRIHKNWLMNEVQHLVWEL 364
Query: 286 DKPNVRFVIHHCLSKSMENFYQVSIAFG 313
K + RFVIH + KS+EN+YQ S G
Sbjct: 365 TKKDCRFVIHFQMPKSIENYYQESGRAG 392
>gi|449543657|gb|EMD34632.1| hypothetical protein CERSUDRAFT_116806 [Ceriporiopsis subvermispora
B]
Length = 806
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 119/360 (33%), Positives = 171/360 (47%), Gaps = 54/360 (15%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------D 53
+ WS +++ +KS F + FR Q N + ++D IMPT S
Sbjct: 123 QFEWSGSLKAKMKSIFGIDSFRLCQEGVCNANMDRRDVFCIMPTGGGKSLTYQLPALLTP 182
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKK---KKICLMTESSS-- 108
V+ L D + L + + ++K I T + + K++ M++ +
Sbjct: 183 GCTLVISPLLALIDDQVESLREVGVDVVK----ITGNTSRGEQTDAMKRLTAMSKGAGSG 238
Query: 109 ---LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSI 165
+KL YV+PEK+ KSK F++ +QK+ +AG LAR IDE HC S GHDFRPDY LS
Sbjct: 239 QNEIKLCYVTPEKVVKSKRFLSLIQKLDEAGKLARFVIDEAHCVSEQGHDFRPDYSALSC 298
Query: 166 LKTMFPDVPILGLTATATTKVMLDVQKMLQIE-----------DCVVIKAPFNRPNLFYE 214
L+ P VP L L+AT V DV +L ++ V +P R NL Y
Sbjct: 299 LRRTCPSVPTLALSATCPPIVRDDVLNILHMKPVVEGKSVGPTGTVFFSSPLYRKNLHYT 358
Query: 215 VRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELR---NRGLRVSAYHA 271
V KP+ + + D + RN +GIIY S KE E + E+L + ++ YHA
Sbjct: 359 VFPKPSDTGQVIQVMKDYILEHHRNHTGIIYCLSRKEAETVAEKLEALSDGMIKTGYYHA 418
Query: 272 KLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L +IAFGLGIDK VRFV+HH +SKS+++FYQ S G
Sbjct: 419 DLAPERRAQLHRQWRAGTVQVVCATIAFGLGIDKKEVRFVLHHSISKSLDHFYQESGRAG 478
>gi|395804511|ref|ZP_10483749.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. F52]
gi|395433398|gb|EJF99353.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. F52]
Length = 768
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/323 (35%), Positives = 155/323 (47%), Gaps = 79/323 (24%)
Query: 52 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG------------------- 92
S+ + + LK F FRPNQ IN L +DA+ IMPTG
Sbjct: 3 SEILHATLKENFGFEKFRPNQETIINTILSGQDALAIMPTGGGKSICFQLPALILPGITI 62
Query: 93 ------KLLKKKKICLMT------------------------ESSSLKLLYVSPEKLAKS 122
L+K + L T +S+ KL+YV+PE L+
Sbjct: 63 VISPLIALMKDQVDSLKTNGISACYINSTQSSQEQQYYIDNLKSNHFKLVYVAPESLSYL 122
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
++L ++ IAIDE HC SSWGHDFRP Y L LK+ FP PIL LTATA
Sbjct: 123 DMAFSELN-------ISLIAIDEAHCISSWGHDFRPAYTNLGYLKSRFPSTPILALTATA 175
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSG 242
D+ K L +++ A F+R NL EVR PA D + ++ D + + N+SG
Sbjct: 176 DKATRTDISKQLNLKNPKTFIASFDRKNLSLEVR--PAL--DRVKQIIDFIENK-PNESG 230
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 284
IIY S K E+L E+LR G+ AYHA L++ +IAFG+G
Sbjct: 231 IIYCLSRKATEELAEKLRKNGIEAKAYHAGLDNETRAKTQDQFINDDCQVVCATIAFGMG 290
Query: 285 IDKPNVRFVIHHCLSKSMENFYQ 307
IDK NVR+VIH+ L K++E +YQ
Sbjct: 291 IDKSNVRWVIHYNLPKNIEGYYQ 313
>gi|73668704|ref|YP_304719.1| ATP-dependent DNA helicase RecQ [Methanosarcina barkeri str.
Fusaro]
gi|72395866|gb|AAZ70139.1| ATP-dependent DNA helicase RecQ [Methanosarcina barkeri str.
Fusaro]
Length = 881
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 169/340 (49%), Gaps = 49/340 (14%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRS 57
S R+ S L F T FRP Q I L +KD ++MPT S + V
Sbjct: 5 SARMYSALHQYFGYTSFRPLQEEIIKDVLERKDVFVLMPTGGGKSMCYQLPALLMEGVTV 64
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPE 117
V+ +L + + L A IA A + + + + + LK+LYV+PE
Sbjct: 65 VVSPLISLMKDQVDGLEANGIA-----AACMNSAQSARENRDVKTAFLENRLKVLYVAPE 119
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL---KTMFPDVP 174
+L M K G ++ +AIDE HC S WGHDFRP+Y+ L +L KT FPD+P
Sbjct: 120 RL-----MMPGTLAFLKKGKVSLLAIDEAHCISEWGHDFRPEYRKLKLLRDPKTGFPDIP 174
Query: 175 ILGLTATATTKVMLDVQKMLQIE---DCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
I+ LTATAT +V D+ L + + A FNR NL+YEVR K K+ E+ D
Sbjct: 175 IIALTATATERVREDIISQLNLHLPPEKGPYVASFNRKNLYYEVRPK----KETFSEITD 230
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL---ESN------------ 276
+ RR R ++GIIY S E L ++L G R YHA L E N
Sbjct: 231 YL-RRHRGEAGIIYCQSRNSVEALTKKLNLAGFRALPYHAGLSDTERNRNQEMFIKDDVE 289
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDK NVRFVIH+ L +++E++YQ + G
Sbjct: 290 IIVATIAFGMGIDKSNVRFVIHYDLPRNLESYYQETGRGG 329
>gi|340502580|gb|EGR29257.1| hypothetical protein IMG5_159830 [Ichthyophthirius multifiliis]
Length = 356
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 127/225 (56%), Gaps = 21/225 (9%)
Query: 102 LMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQ 161
L +S K+L V+PEK+ + +F + L K G L R +DE HC S WGHDFR DY
Sbjct: 65 LEQDSDYPKILLVTPEKIMQDNNFNSFLIKCNNIGKLKRFVVDEAHCVSHWGHDFRKDYC 124
Query: 162 YLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAA 221
L LK FP+VP+L LTATAT K +D+ K ++I+ + FNRPNL+Y+V P
Sbjct: 125 QLGNLKQQFPNVPVLALTATATEKCKIDIIKQMKIKGASYFQCSFNRPNLYYDVIQVPNN 184
Query: 222 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREEL-RNRGLRVSAYHAKLESN---- 276
Q + + + +F QSGIIY + K+ L EEL + G+ Y++KL +
Sbjct: 185 Q--VIQHMVTFIKEKFNRQSGIIYCCTKKDTRSLSEELTKKHGINSCYYNSKLSDSEKDK 242
Query: 277 --------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIH+ SKS+E +YQ
Sbjct: 243 VQNLWMQNDIQIICATIAFGMGIDKPDVRFVIHYSFSKSLEGYYQ 287
>gi|383450034|ref|YP_005356755.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium indicum
GPTSA100-9]
gi|380501656|emb|CCG52698.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium indicum
GPTSA100-9]
Length = 731
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 133/224 (59%), Gaps = 35/224 (15%)
Query: 106 SSSLKLLYVSPEKLAKSK--SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL 163
S KLLYV+PE L K + F+ +++ L+ +AIDE HC S WGHDFRP+Y+ L
Sbjct: 111 SGKTKLLYVAPESLTKEEYIQFLNEVK-------LSFVAIDEAHCISEWGHDFRPEYRNL 163
Query: 164 SILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK 223
+ DVPI+GLTATAT KV D+ K L + D V KA FNRPNL+YEVR K +
Sbjct: 164 RNIIRQLGDVPIIGLTATATPKVQEDILKNLDMPDANVFKASFNRPNLYYEVRPKTKNVE 223
Query: 224 DCLDELADLMS--RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---- 277
AD++ ++ + +SG+IY S K+ E++ + L+ G+ YHA L++
Sbjct: 224 ------ADIIRFIKQHKGKSGVIYCLSRKKVEEIAQVLQVNGISAVPYHAGLDAKTRAKH 277
Query: 278 --------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 278 QDMFLMEDVEVVVATIAFGMGIDKPDVRFVIHHDIPKSLESYYQ 321
>gi|323499630|ref|ZP_08104598.1| ATP-dependent DNA helicase RecQ [Vibrio sinaloensis DSM 21326]
gi|323315231|gb|EGA68274.1| ATP-dependent DNA helicase RecQ [Vibrio sinaloensis DSM 21326]
Length = 611
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 111/326 (34%), Positives = 177/326 (54%), Gaps = 47/326 (14%)
Query: 12 RSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS----VLKS 61
+SVL+ F +FR Q I A+ +D+++IMPT Y VR+ V+
Sbjct: 17 QSVLQEVFGYQEFRDGQQEVIESAVRGQDSLVIMPTGGGKSLCYQIPALVRNGLTLVISP 76
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAK 121
+L + +QL A +A ++ MP +L+ + S ++KL+YVSPE++
Sbjct: 77 LISLMKDQVDQLKANGVAAECVNST--MPRDELIS---VYNRMNSGAIKLIYVSPERVLM 131
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
+ F+ +L+++ L+ IA+DE HC S WGHDFRP+Y L LK FP VP++ LTAT
Sbjct: 132 -RDFIERLEQL----PLSMIAVDEAHCISQWGHDFRPEYASLGQLKQYFPHVPVMALTAT 186
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRN 239
A D+ + LQ++D F+RPN+ Y + + KP +Q + + + R
Sbjct: 187 ADDATRKDIMQRLQLQDPHSYLGSFDRPNIRYTLIEKHKPISQ------VVRFLEGQ-RG 239
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAF 281
Q GIIY S K+ E + E+L N GLR ++YHA L+++ ++AF
Sbjct: 240 QCGIIYCGSRKKVEMVTEKLCNNGLRAASYHAGLDADERAYVQEAFQRDDIQIVVATVAF 299
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GI+KPNVRFV+H + +++E++YQ
Sbjct: 300 GMGINKPNVRFVVHFDIPRNIESYYQ 325
>gi|238750693|ref|ZP_04612192.1| ATP-dependent DNA helicase recQ [Yersinia rohdei ATCC 43380]
gi|238711083|gb|EEQ03302.1| ATP-dependent DNA helicase recQ [Yersinia rohdei ATCC 43380]
Length = 610
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 106/323 (32%), Positives = 161/323 (49%), Gaps = 87/323 (26%)
Query: 57 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC-----LMTE------ 105
VL+ F FRP Q IN L +D +++MPTG K +C L+TE
Sbjct: 15 QVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGG---GKSLCYQIPALVTEGLTLVV 71
Query: 106 -----------------------------------------SSSLKLLYVSPEKLAKSKS 124
S +KLLY++PE+L +S
Sbjct: 72 SPLISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLYIAPERLVM-ES 130
Query: 125 FMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATT 184
F+ +L + A +A+DE HC S WGHDFRP+Y+ L LK FPD+P++ LTATA
Sbjct: 131 FLDQLHQWRPA----LLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADE 186
Query: 185 KVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQSG 242
D+ ++L +E+ ++ + F+RPN+ Y + + KP LD+L + + R +SG
Sbjct: 187 ATRGDIVRLLNLENPLIQVSSFDRPNIRYTLVEKFKP------LDQLWRFVQDQ-RGKSG 239
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLG 284
IIY S + ED L++RGL V+AYHA L++ ++AFG+G
Sbjct: 240 IIYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAHVQEAFQRDDLQVVVATVAFGMG 299
Query: 285 IDKPNVRFVIHHCLSKSMENFYQ 307
I+KPNVRFV+H + +++E++YQ
Sbjct: 300 INKPNVRFVVHFDIPRTIESYYQ 322
>gi|254443570|ref|ZP_05057046.1| ATP-dependent DNA helicase RecQ [Verrucomicrobiae bacterium DG1235]
gi|198257878|gb|EDY82186.1| ATP-dependent DNA helicase RecQ [Verrucomicrobiae bacterium DG1235]
Length = 616
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 122/335 (36%), Positives = 166/335 (49%), Gaps = 57/335 (17%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS---- 61
+DRV + LK F FRP Q + AL +D ++PT S ++ +VL
Sbjct: 6 TDRVHAALKKYFGHDTFRPLQAEIVADALAGRDVFALLPTGGGKSLCYQLPAVLSEGLTV 65
Query: 62 ---------KFNLTDFRPNQLAA--INIALLKKDAIIIMPTGKLLKKKKICLMTESSSLK 110
K + N +AA +N +L KKDA KL + +
Sbjct: 66 VISPLIALMKDQVDGLTENGIAATFLNSSLGKKDAA--QRYAKLF----------AGDYQ 113
Query: 111 LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170
+LYV+PE+L F+ L+K + R A+DE HC S WGHDFRP+Y+ L+ L+ F
Sbjct: 114 VLYVAPERLMLG-GFLEDLKKWK----VCRFAVDEAHCISEWGHDFRPEYRQLAELRKRF 168
Query: 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA 230
PD P + LTATAT +V D+ K LQ+ D A FNRPNL Y + K A + L +
Sbjct: 169 PDTPFMALTATATDRVRGDIVKQLQLHDPTDYVASFNRPNLAYRIEQKQAVFRQILKFVK 228
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL---------------ES 275
SR F +SGIIY S K E + LR G+ AYHA + E
Sbjct: 229 ---SRPF--ESGIIYCFSRKATEQTADRLRQEGVEAIAYHAGMTPLQRAKNQDAFIRDEV 283
Query: 276 NV---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
V +IAFG+GIDKPNVR+VIH + K++E +YQ
Sbjct: 284 KVVCATIAFGMGIDKPNVRYVIHQDIPKNIEGYYQ 318
>gi|373849778|ref|ZP_09592579.1| ATP-dependent DNA helicase RecQ [Opitutaceae bacterium TAV5]
gi|372475943|gb|EHP35952.1| ATP-dependent DNA helicase RecQ [Opitutaceae bacterium TAV5]
Length = 620
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 110/323 (34%), Positives = 165/323 (51%), Gaps = 43/323 (13%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
+ L + F + FRP Q I +L +D ++PT S + V+
Sbjct: 6 NTLHTTFGYSGFRPLQREIIEASLAGRDVFALLPTGGGKSMCFQLPALHRTGLTVVVSPL 65
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
L + +QL A +A ++ + T + + L S +LLYV+PE+L
Sbjct: 66 IALMKDQVDQLQAAGVAATYLNSSL---TSGEARSRLAGL--HRSEWRLLYVAPERL--- 117
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+ Q+ +A +A +AIDE HC S WGHDFRP+Y+ ++ L+ P+VP++ LTATA
Sbjct: 118 --MLDNWQENLRAWNVAALAIDEAHCISEWGHDFRPEYRQIARLREFLPEVPVMALTATA 175
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSG 242
T +V D+ K LQ+ + V A FNRPNL Y R+ P Q L ++ D + +R ++SG
Sbjct: 176 TGRVREDIVKHLQLREPAVYVASFNRPNLSY--RVLPKDQP--LKQIIDFVKKR-EDESG 230
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLG 284
IIY + E E L +RG YHA L ++ +IAFG+G
Sbjct: 231 IIYCATRATAEKTAESLASRGYAARPYHAGLSADDRSANQELFLRDDVKIICATIAFGMG 290
Query: 285 IDKPNVRFVIHHCLSKSMENFYQ 307
I+KPNVR+VIHH L K++E +YQ
Sbjct: 291 INKPNVRWVIHHDLPKNIEGYYQ 313
>gi|319954189|ref|YP_004165456.1| ATP-dependent DNA helicase recq [Cellulophaga algicola DSM 14237]
gi|319422849|gb|ADV49958.1| ATP-dependent DNA helicase RecQ [Cellulophaga algicola DSM 14237]
Length = 733
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 174/331 (52%), Gaps = 50/331 (15%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DRVRSVLKS 61
+ S LK F ++F+ Q + I L K+ ++MPT S +++ S
Sbjct: 8 LHSSLKKYFGFSEFKGLQESVITSILEGKNCFVVMPTGGGKSLCYQLPALMQEGTAIIVS 67
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKK--KKICLMTESSSLKLLYVSPEKL 119
L NQ+ AI + + I + L K K++ S KLLYV+PE L
Sbjct: 68 P--LIALMKNQVDAIR-GISSEHGIAHVLNSSLTKTEIKQVKSDITSGITKLLYVAPESL 124
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGL 178
K + ++ LQ + L+ +A+DE HC S WGHDFRP+Y+ L SI+ + +PI+GL
Sbjct: 125 TKDE-YVEFLQSV----KLSFVAVDEAHCISEWGHDFRPEYRNLRSIISRLDDTIPIIGL 179
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFR 238
TATAT KV D+ K L I D + KA FNRPNLFYEVR P Q + AD++ RF
Sbjct: 180 TATATPKVQEDIIKNLGITDADLFKASFNRPNLFYEVR--PKTQ----NIEADII--RFV 231
Query: 239 NQ----SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------- 277
Q SGIIY S K+ E+L + L+ G+ YHA ++
Sbjct: 232 KQNTGKSGIIYCLSRKKVEELAQILQVNGVSAVPYHAGFDTKTRSKYQDMFLMEGVDVVV 291
Query: 278 -SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 292 ATIAFGMGIDKPDVRFVIHHDIPKSIESYYQ 322
>gi|238786204|ref|ZP_04630153.1| ATP-dependent DNA helicase recQ [Yersinia bercovieri ATCC 43970]
gi|238712894|gb|EEQ04957.1| ATP-dependent DNA helicase recQ [Yersinia bercovieri ATCC 43970]
Length = 610
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 169/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q IN L +D +++MPT S D + V+
Sbjct: 15 QVLRDTFGYQQFRPGQQEIINATLEGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A + A + + ++ + S +KLLY++PE+L
Sbjct: 75 ISLMKDQVDQLLAYGVG-----AGCLNSSQTREQQLAVMDGCRSGQIKLLYIAPERLVM- 128
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+SF+ +L + A +A+DE HC S WGHDFRP+Y+ L LK FP +P++ LTATA
Sbjct: 129 ESFLDQLHQWRPA----LLAVDEAHCISQWGHDFRPEYRALGQLKQRFPHLPVIALTATA 184
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L + ++ + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 185 DEATRGDIVRLLNLHQPLIQVSSFDRPNIRYTLVEKFKP------LDQLWRFVQDQ-RGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S + ED L++RGL V+AYHA L++ ++AFG
Sbjct: 238 SGIIYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAHVQEAFQRDDLQVVVATVAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 298 MGINKPNVRFVVHFDIPRTIESYYQ 322
>gi|430812018|emb|CCJ30545.1| unnamed protein product [Pneumocystis jirovecii]
Length = 704
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 124/361 (34%), Positives = 175/361 (48%), Gaps = 66/361 (18%)
Query: 6 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS-----------DR 54
P S + L+ F DFR Q AI AL +D II PT S
Sbjct: 8 PSSVDISFTLRKVFGKPDFRGCQKEAIECALRGEDIFIIAPTGMGKSLCYQLPAIVVDHG 67
Query: 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC--LMTESSSLKLL 112
V V+ L + + + L A N+ A + T + +K+I L ++LL
Sbjct: 68 VTIVVSPLLALMNNQVDILCAKNLP-----AATLNSTTSIENRKRILEDLACGHPQVRLL 122
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
YV+PE L+ +++F KL +Y+ G L R IDE HC S WGHDFR DY+ LS L+ +P
Sbjct: 123 YVTPELLS-TENFRNKLLNVYQHGELHRFVIDEAHCVSEWGHDFRKDYKLLSFLRKKYPK 181
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKA---PFNRPNLFYEVRIKPAAQKDCLDEL 229
+PI+ LTATAT KV LD+ K+L + +K PF+R NL +EVR K KD ++
Sbjct: 182 IPIMALTATATEKVRLDIAKILGLPAPPTLKVFIEPFSRKNLHFEVRFKSDG-KDHYEDF 240
Query: 230 AD--------------LMSRRFRNQS-----------GIIYTTSIKECEDLREELRNRGL 264
L ++ F +Q+ GIIY CE++ E L+N G+
Sbjct: 241 RKFILSVYARKKKRLFLENKNFIDQNGGNYDIPVSICGIIYAKKRGTCEEVAERLKNDGI 300
Query: 265 RVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFY 306
+YHA L S + +IAFG+G+DK +VRFV+H +SKSME +Y
Sbjct: 301 NAQSYHAGLSSTMRDKTMKLWYEGKIDIIVATIAFGMGVDKEDVRFVVHWDMSKSMEAYY 360
Query: 307 Q 307
Q
Sbjct: 361 Q 361
>gi|110597180|ref|ZP_01385469.1| ATP-dependent DNA helicase, RecQ family:ATP-dependent DNA helicase
RecQ [Chlorobium ferrooxidans DSM 13031]
gi|110341371|gb|EAT59836.1| ATP-dependent DNA helicase, RecQ family:ATP-dependent DNA helicase
RecQ [Chlorobium ferrooxidans DSM 13031]
Length = 597
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 116/327 (35%), Positives = 166/327 (50%), Gaps = 55/327 (16%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDFRPNQ 72
++ F +FRPNQ + L K+D +MPT S ++ +VL P
Sbjct: 1 MRKVFGFREFRPNQEKIVRAILEKRDVFAVMPTGGGKSLCYQLPAVLL---------PGT 51
Query: 73 LAAIN--IALLKKDAIIIMPTG--------KLLKKKKICLMTE--SSSLKLLYVSPEKLA 120
I+ IAL+K G L +++ +M E S+SL LLYV+PE+
Sbjct: 52 CMVISPLIALMKDQVDGARANGIRAAFLNSSQLPEERESVMRELLSNSLDLLYVAPERFT 111
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+++ ++ IDE HC S WGHDFRPDY LS L ++FPD+P+ TA
Sbjct: 112 -----FDHFRELLGRVNISMAVIDEAHCVSEWGHDFRPDYLSLSALVSLFPDLPVSAFTA 166
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRI--KPAAQKDCLDELADLMSRRFR 238
TAT +V D+ + + + ++++A F+RPNLFY+VR KP AQ +A L + +
Sbjct: 167 TATHRVQQDILDRIALRNPLIVRASFDRPNLFYDVRFKEKPDAQI-----VAILKAN--K 219
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIA 280
++GIIY TS K D L+ RG R YHA L + +IA
Sbjct: 220 GKAGIIYRTSRKSVNDTAAMLQARGFRALPYHAGLSDDERKRNQEAFIRDEVEVIVATIA 279
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GIDK N+RFVIH L KS+EN+YQ
Sbjct: 280 FGMGIDKSNIRFVIHADLPKSIENYYQ 306
>gi|425450984|ref|ZP_18830806.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 7941]
gi|389767941|emb|CCI06812.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 7941]
Length = 701
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 112/328 (34%), Positives = 157/328 (47%), Gaps = 73/328 (22%)
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----------LLKKKK--- 99
D + VLK F FRPNQ I AL +D ++IMPTG L+KK
Sbjct: 5 DSLEKVLKYHFGYDQFRPNQRQIIEAALNDQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 100 ----ICLMTES--------------------------------SSLKLLYVSPEKLAKSK 123
I LM + +KLLYV+PE+L S
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRDRESLILQGKIKLLYVAPERLL-SP 123
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
SF+ L + LA +A+DE HC S WGHDFRP+Y+ + ++ FP VPIL LTATAT
Sbjct: 124 SFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATAT 183
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
+V D+ + L + D + A FNRPNL+YEV+ K + L + + + SGI
Sbjct: 184 QQVREDIIQQLGLRDASIHIASFNRPNLYYEVQPKTSKSYQQLYQYI-----KGKKGSGI 238
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGI 285
+Y S K + + E L+ G+ YHA + +IAFG+GI
Sbjct: 239 VYCISRKTVDQVAEHLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATIAFGMGI 298
Query: 286 DKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+KP+VRFV+H+ L +++E +YQ S G
Sbjct: 299 NKPDVRFVVHYDLPRNLEGYYQESGRAG 326
>gi|452209801|ref|YP_007489915.1| ATP-dependent DNA helicase RecQ [Methanosarcina mazei Tuc01]
gi|452099703|gb|AGF96643.1| ATP-dependent DNA helicase RecQ [Methanosarcina mazei Tuc01]
Length = 876
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 122/341 (35%), Positives = 169/341 (49%), Gaps = 51/341 (14%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRS 57
S R+ SVL+ F T FRP Q I L +KD ++MPT S D V
Sbjct: 2 SSRMHSVLRQYFGYTAFRPLQEEIIRDVLDRKDVFVLMPTGGGKSICYQLPSLLLDGVTV 61
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPE 117
V+ +L + + L A IA A + T + + + + LK+LY++PE
Sbjct: 62 VVSPLISLMKDQVDGLEANGIA-----AACMNSTQSPRENRDVKNAFLENRLKVLYIAPE 116
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL---KTMFPDVP 174
+L +F K G ++ AIDE HC S WGHDFRP+Y+ L +L K FPDVP
Sbjct: 117 RLMMPGTFA-----FLKKGKVSLFAIDEAHCISEWGHDFRPEYRKLKLLRDPKNGFPDVP 171
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAP----FNRPNLFYEVRIKPAAQKDCLDELA 230
++ LTATAT +V D+ L + + K P FNR NL+YEVR K KD E+
Sbjct: 172 VIALTATATERVKKDIVSQLGL-NIDPEKGPYVASFNRSNLYYEVRPK----KDTFSEIT 226
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN-------------- 276
D + R R ++GIIY S E L +L G R YHA L +
Sbjct: 227 DYLLRH-RGEAGIIYCQSRNNVETLTRKLNLAGFRALPYHAGLSDSERSRNQEMFIRDDV 285
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GI+K NVRFVIH+ L +++E++YQ + G
Sbjct: 286 DIIVATIAFGMGINKSNVRFVIHYDLPRNLESYYQETGRGG 326
>gi|166362830|ref|YP_001655103.1| ATP-dependent DNA helicase [Microcystis aeruginosa NIES-843]
gi|166085203|dbj|BAF99910.1| ATP-dependent DNA helicase [Microcystis aeruginosa NIES-843]
Length = 703
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 160/328 (48%), Gaps = 73/328 (22%)
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----------LLKKKK--- 99
D + LK F FRPNQ I AL +D ++IMPTG L+KK
Sbjct: 5 DSLEKALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 100 ----ICLMTES--------------------------------SSLKLLYVSPEKLAKSK 123
I LM + +KLLYV+PE+L S
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPERLL-SP 123
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
SF+ L + LA +A+DE HC S WGHDFRP+Y+ + ++ FP VPIL LTATAT
Sbjct: 124 SFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATAT 183
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
+V D+ + L + D + A FNRPNL+YEV+ K + L + + + +GI
Sbjct: 184 QQVREDIIQQLGLRDTSIHIASFNRPNLYYEVQPKTSKSYQQLYQYI-----KGQKGAGI 238
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLE----SN--------------VSIAFGLGI 285
+Y S K + + E+L+ G+ YHA +E SN +IAFG+GI
Sbjct: 239 VYCISRKTVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRDDVQIMVATIAFGMGI 298
Query: 286 DKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+KP+VRFVIH+ L +++E +YQ S G
Sbjct: 299 NKPDVRFVIHYDLPRNLEGYYQESGRAG 326
>gi|425433706|ref|ZP_18814184.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9432]
gi|389675683|emb|CCH95185.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9432]
Length = 701
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 112/328 (34%), Positives = 157/328 (47%), Gaps = 73/328 (22%)
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----------LLKKKK--- 99
D + VLK F FRPNQ I AL +D ++IMPTG L+KK
Sbjct: 5 DSLEKVLKYHFGYDQFRPNQRQIIEAALNDQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 100 ----ICLMTES--------------------------------SSLKLLYVSPEKLAKSK 123
I LM + +KLLYV+PE+L S
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRDRESLILQGKIKLLYVAPERLL-SP 123
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
SF+ L + LA +A+DE HC S WGHDFRP+Y+ + ++ FP VPIL LTATAT
Sbjct: 124 SFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATAT 183
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
+V D+ + L + D + A FNRPNL+YEV+ K + L + + + SGI
Sbjct: 184 QQVREDIIQQLGLRDASIHIASFNRPNLYYEVQPKTSKSYQQLYQYI-----KGKKGSGI 238
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGI 285
+Y S K + + E L+ G+ YHA + +IAFG+GI
Sbjct: 239 VYCISRKTVDQVAEHLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATIAFGMGI 298
Query: 286 DKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+KP+VRFV+H+ L +++E +YQ S G
Sbjct: 299 NKPDVRFVVHYDLPRNLEGYYQESGRAG 326
>gi|425466065|ref|ZP_18845368.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9809]
gi|389831578|emb|CCI25550.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9809]
Length = 703
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 160/328 (48%), Gaps = 73/328 (22%)
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----------LLKKKK--- 99
D + LK F FRPNQ I AL +D ++IMPTG L+KK
Sbjct: 5 DSLEKALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 100 ----ICLMTES--------------------------------SSLKLLYVSPEKLAKSK 123
I LM + +KLLYV+PE+L S
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPERLL-SP 123
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
SF+ L + LA +A+DE HC S WGHDFRP+Y+ + ++ FP VPIL LTATAT
Sbjct: 124 SFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATAT 183
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
+V D+ + L + D + A FNRPNL+YEV+ K + L + + + +GI
Sbjct: 184 QQVREDIIQQLGLRDTSIHIASFNRPNLYYEVQPKTSKSYQQLYQYI-----KGQKGAGI 238
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLE----SN--------------VSIAFGLGI 285
+Y S K + + E+L+ G+ YHA +E SN +IAFG+GI
Sbjct: 239 VYCISRKTVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRDDVQIMVATIAFGMGI 298
Query: 286 DKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+KP+VRFVIH+ L +++E +YQ S G
Sbjct: 299 NKPDVRFVIHYDLPRNLEGYYQESGRAG 326
>gi|374316651|ref|YP_005063079.1| ATP-dependent DNA helicase RecQ [Sphaerochaeta pleomorpha str.
Grapes]
gi|359352295|gb|AEV30069.1| ATP-dependent DNA helicase RecQ [Sphaerochaeta pleomorpha str.
Grapes]
Length = 619
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 112/328 (34%), Positives = 170/328 (51%), Gaps = 47/328 (14%)
Query: 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLTD 67
R + +LK+ F FR NQ I+ L +D MPT S ++ +V+ +
Sbjct: 22 RAKKILKTVFGYDSFRDNQKEVISAILSGRDVFTSMPTGGGKSLCYQIPAVMFEGLTV-- 79
Query: 68 FRPNQLAAINIALLKKDAIIIMPTG-------KLLKKKKICLM---TESSSLKLLYVSPE 117
+ + IAL+K + G L+ K+I + + +KLLY+SPE
Sbjct: 80 -----VISPLIALMKDQVDDAVSKGIAASFLNSSLESKEITEIYARLHRNEIKLLYISPE 134
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
+LA ++ LQ + ++ AIDE HC S WGHDFRPDY L+ ++ FP VP+ G
Sbjct: 135 RLAID-GYLQWLQTL----NISFFAIDEAHCLSEWGHDFRPDYLSLAQIRDAFPTVPLAG 189
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
TATAT +V D+ ++L++ D + ++A FNR L+YEVR K + L ++AD + +
Sbjct: 190 FTATATQQVQDDIIRILKMRDPLTVRASFNRKELYYEVRQKT----EILSQIADFI-KLH 244
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSI 279
+SGI+Y S K+ E L+ +G++ YHA L +I
Sbjct: 245 SEESGIVYRISRKDVEKTAAYLKTQGIKALYYHAGLSREERAKNQDLFNNDKADVIVATI 304
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
AFG+GIDK N+R+VIH LSK+ME +YQ
Sbjct: 305 AFGMGIDKSNIRYVIHGDLSKNMEGYYQ 332
>gi|420158748|ref|ZP_14665562.1| ATP-dependent DNA helicase RecQ [Capnocytophaga ochracea str. Holt
25]
gi|394763235|gb|EJF45355.1| ATP-dependent DNA helicase RecQ [Capnocytophaga ochracea str. Holt
25]
Length = 727
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 120/334 (35%), Positives = 175/334 (52%), Gaps = 52/334 (15%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSV 58
D + S LK F F+ +Q I + K++ +IMPT S + V
Sbjct: 4 DDLHSALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAIV 63
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS--LKLLYVSP 116
+ L NQ+ A+ + D+I + L K + +M + S+ KLLYV+P
Sbjct: 64 ISP---LIALMKNQVDAMR-GISSTDSIAHVLNSSLTKNEIREVMEDISAGKTKLLYVAP 119
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPI 175
E L K K K ++ +A+DE HC S WGHDFRP+Y+ + +I++ + ++PI
Sbjct: 120 ESLIKEK-----YANFLKTVPISFVAVDEAHCISEWGHDFRPEYRNIRTIIERLGSNIPI 174
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATAT KV D+ K L +++ V K+ FNRPNL+YEVR K +D AD++
Sbjct: 175 VALTATATPKVQEDILKNLGMQEANVFKSSFNRPNLYYEVRPKTK----NVD--ADII-- 226
Query: 236 RFRNQ----SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------------- 277
RF Q SGIIY S K+ EDL + L+ G+ YHA L++
Sbjct: 227 RFVKQNSKKSGIIYCLSRKKVEDLAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVD 286
Query: 278 ----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 287 VVVATIAFGMGIDKPDVRFVIHHDIPKSIESYYQ 320
>gi|293393904|ref|ZP_06638211.1| ATP-dependent helicase RecQ [Serratia odorifera DSM 4582]
gi|291423731|gb|EFE96953.1| ATP-dependent helicase RecQ [Serratia odorifera DSM 4582]
Length = 614
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 108/325 (33%), Positives = 168/325 (51%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q IN A+ +D +++MPT S D + V+
Sbjct: 19 QVLRDTFGYQQFRPGQQTIINAAINGQDCLVVMPTGGGKSLCYQIPALVMDGLTLVVSPL 78
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A ++ A T ++ ++ +KLLY++PE+L
Sbjct: 79 ISLMKDQVDQLLAYGVS-----AACYNSTQTREQQLEVMAGCRRGDVKLLYIAPERLMMD 133
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
SF+ L A +A+DE HC S WGHDFRP+Y+ L LK FP +P++ LTATA
Sbjct: 134 -SFLDLLDHCQPA----LLAVDEAHCISQWGHDFRPEYRALGQLKQRFPTMPVIALTATA 188
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L + D +V + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 189 DEATRGDITRLLALHDPLVQVSSFDRPNIRYTLVEKFKP------LDQLWRFVQDQ-RGK 241
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S + ED L++RGL V+AYHA L++ ++AFG
Sbjct: 242 SGIIYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFG 301
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 302 MGINKPNVRFVVHFDIPRNIESYYQ 326
>gi|428224630|ref|YP_007108727.1| ATP-dependent DNA helicase RecQ [Geitlerinema sp. PCC 7407]
gi|427984531|gb|AFY65675.1| ATP-dependent DNA helicase RecQ [Geitlerinema sp. PCC 7407]
Length = 741
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 173/330 (52%), Gaps = 33/330 (10%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLT 66
D + LK F FRP Q + AL ++D ++IMPT S ++ ++L S ++
Sbjct: 13 DTLEDALKHFFGYESFRPGQREIVEAALDRRDVMVIMPTGGGKSLCFQLPALLNSGVSVV 72
Query: 67 DFRPNQLAAINIALLKKDAIIIM-----PTGKLLKKKKICLMTESSSLKLLYVSPEKLAK 121
L +A L+K+ + +G+ ++ ++ ++ +KLLYV+PE+L
Sbjct: 73 VSPLIALMQDQVASLQKNGVGATFLNSSISGEEVRSRQNEIL--DGRIKLLYVAPERLL- 129
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
++ F+ L + + L+ IDE HC S WGHDFRP+Y+ L ++ FP+VP++ LTAT
Sbjct: 130 NEQFLLWLNDVRQQVGLSTFVIDEAHCVSEWGHDFRPEYRQLLQIRQRFPEVPVMALTAT 189
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQS 241
AT +V D+ + L + V A FNRPNL+YEVR K K+ DEL L R S
Sbjct: 190 ATDRVRQDMGEQLALRQPYVHIASFNRPNLYYEVRPKG---KNSYDEL--LQKIRHVEGS 244
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGL 283
I+Y S + +L L+ G+ YHA L +V +IAFG+
Sbjct: 245 CIVYCLSRRRVNELTTRLQQEGIEALPYHAGLSDDVRTENQTRFIRDDVRVIVATIAFGM 304
Query: 284 GIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
GI+KP+VR V+H+ L +++E +YQ S G
Sbjct: 305 GINKPDVRLVMHYDLPRNIEAYYQESGRAG 334
>gi|325954269|ref|YP_004237929.1| ATP-dependent DNA helicase RecQ [Weeksella virosa DSM 16922]
gi|323436887|gb|ADX67351.1| ATP-dependent DNA helicase RecQ [Weeksella virosa DSM 16922]
Length = 731
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 113/332 (34%), Positives = 168/332 (50%), Gaps = 59/332 (17%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSDRVR------ 56
S LK F F+ Q I L +D ++MPT S+ V
Sbjct: 11 SYLKKYFGYDQFKGQQEEIIKTLLNNQDVFVLMPTGGGKSMCYQLPALMSEGVAIIVSPL 70
Query: 57 -SVLKSKFN-LTDFRPNQLAAI-NIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLY 113
+++K++ + L N++A + N +L K + I+M + K+LY
Sbjct: 71 IALMKNQVDALRGISTNEVAHVLNSSLNKSETKIVMDD------------IRAGKTKMLY 118
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
V+PE L K + +K ++ AIDE HC S WGHDFRP+Y+ L + +
Sbjct: 119 VAPESLTKEEYI-----DFFKTVKISFFAIDEAHCISEWGHDFRPEYRNLKSIIQKIGNA 173
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
PI+ LTATAT KV D+QK L ++D V K FNRPNLFYEVR K K E+ +
Sbjct: 174 PIIALTATATPKVQEDIQKTLGMQDARVFKDSFNRPNLFYEVRPKINQDK----EIVKFI 229
Query: 234 SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---------------- 277
+R + +SG++Y S K+ E+L + L+ G++ YHA L++
Sbjct: 230 KKR-QGKSGVVYCLSRKKVEELTQLLQVNGIKAIPYHAGLDAKTRSKHQDMFLMEDVDVV 288
Query: 278 --SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIH+ + KS+E++YQ
Sbjct: 289 VATIAFGMGIDKPDVRFVIHYDIPKSLESYYQ 320
>gi|393220095|gb|EJD05581.1| ATP-dependent DNA helicase [Fomitiporia mediterranea MF3/22]
Length = 878
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 118/366 (32%), Positives = 176/366 (48%), Gaps = 59/366 (16%)
Query: 1 MLPNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLK 60
M + WS +++ ++ F++ FR Q N + +D + IMPT S + L
Sbjct: 110 MTEAFEWSGELKARMREVFSIQSFRLCQEGVCNANMDGRDIVCIMPTGGGKS--LTYQLP 167
Query: 61 SKFN---------LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS--- 108
N L +Q+ +++ +A+++M + + + I +++
Sbjct: 168 GLLNPGCTLVISPLISLITDQI--LHLHEFGVEAVMLMGSTSKEESRDIYSRLAAAANPK 225
Query: 109 ---------LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPD 159
+K YV+PEK+AKSKSF + L+K+ AG L+RI IDE HC S GHDFRPD
Sbjct: 226 ANRNGAVLEIKFCYVTPEKIAKSKSFTSMLEKLANAGKLSRIVIDEAHCVSQLGHDFRPD 285
Query: 160 YQYLSILKTMFPDVPILGLTATATTKVMLDVQK-----------MLQIEDCVVIKAPFNR 208
Y+ LSIL+ +FP VPIL L+AT KV+ D+ + V AP R
Sbjct: 286 YKKLSILRQLFPRVPILALSATCPPKVLKDLLLTLRLKPVVSGTAASADGTVYFSAPLYR 345
Query: 209 PNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRG---LR 265
NL Y V KP++ + ++D + +N SGI+Y S K+ E + E L +R
Sbjct: 346 KNLHYRVVPKPSSSNGLIKAMSDYILNHHQNDSGIVYCMSKKDTEAVAEGLSKESGGKIR 405
Query: 266 VSAYHAKLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
YHA + +IAFGLGIDK +VRFV+HH SKS+E +YQ
Sbjct: 406 TGVYHADIHDRDKANLHERWRRGEVKVVCATIAFGLGIDKGDVRFVLHH--SKSLEGYYQ 463
Query: 308 VSIAFG 313
S G
Sbjct: 464 ESGRAG 469
>gi|224025973|ref|ZP_03644339.1| hypothetical protein BACCOPRO_02724 [Bacteroides coprophilus DSM
18228]
gi|224019209|gb|EEF77207.1| hypothetical protein BACCOPRO_02724 [Bacteroides coprophilus DSM
18228]
Length = 727
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/323 (35%), Positives = 168/323 (52%), Gaps = 43/323 (13%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-----LTD 67
LK F F+ NQ A I L KD ++MPT S ++ S+L L
Sbjct: 11 LKKYFGFDTFKGNQEAIIRNLLEGKDTFVLMPTGGGKSLCYQLPSLLMEGTAIVISPLIA 70
Query: 68 FRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE--SSSLKLLYVSPEKLAKSKS- 124
NQ+ A+ ++D + L K + ++ S KLLYV+PE L K ++
Sbjct: 71 LMKNQVDAMR-NFSEEDGVAHFINSSLTKSAIDQVKSDILSGKTKLLYVAPESLTKEENV 129
Query: 125 -FMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
F+ ++ ++ A+DE HC S WGHDFRP+Y+ + + P++ LTATAT
Sbjct: 130 GFLKHVK-------ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPVIALTATAT 182
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPA-AQKDCLDELADLMSRRFRNQSG 242
KV +D+QK L + D V K+ FNRPNL+YEVR K A +D + + R+ +SG
Sbjct: 183 PKVKMDIQKNLGMTDAVEFKSSFNRPNLYYEVRAKTANVDRDIIKFI-----RQNEEKSG 237
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 284
IIY S K+ E+L E L+ G++ YHA ++S +IAFG+G
Sbjct: 238 IIYCLSRKKVEELAEVLQANGIKARPYHAGMDSATRSANQDAFLKEDIDVIVATIAFGMG 297
Query: 285 IDKPNVRFVIHHCLSKSMENFYQ 307
IDKP+VRFVIH+ + KS+E +YQ
Sbjct: 298 IDKPDVRFVIHYDVPKSLEGYYQ 320
>gi|238789392|ref|ZP_04633178.1| ATP-dependent DNA helicase recQ [Yersinia frederiksenii ATCC 33641]
gi|238722535|gb|EEQ14189.1| ATP-dependent DNA helicase recQ [Yersinia frederiksenii ATCC 33641]
Length = 610
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 165/320 (51%), Gaps = 81/320 (25%)
Query: 57 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG------------------------ 92
VL+ F FRP Q IN L +D +++MPTG
Sbjct: 15 QVLRDTFGYQQFRPGQQEIINATLAGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSPL 74
Query: 93 ---------KLL--------------KKKKICLMT--ESSSLKLLYVSPEKLAKSKSFMT 127
+LL +++++ +M S +KLLY++PE+L +SF+
Sbjct: 75 ISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLYIAPERLVM-ESFLD 133
Query: 128 KLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVM 187
+L + ++ G LA +DE HC S WGHDFRP+Y+ L LK FPD+P++ LTATA
Sbjct: 134 QLHQ-WRPGLLA---VDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADEATR 189
Query: 188 LDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQSGIIY 245
D+ ++L ++ ++ + F+RPN+ Y + + KP LD+L + + R +SGIIY
Sbjct: 190 GDIVRLLNLDQPLIQVSSFDRPNIRYTLVEKFKP------LDQLWRFVQDQ-RGKSGIIY 242
Query: 246 TTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDK 287
S + ED L++RGL V+AYHA L++ ++AFG+GI+K
Sbjct: 243 CNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGINK 302
Query: 288 PNVRFVIHHCLSKSMENFYQ 307
PNVRFV+H + +++E++YQ
Sbjct: 303 PNVRFVVHFDIPRTIESYYQ 322
>gi|327402848|ref|YP_004343686.1| ATP-dependent DNA helicase RecQ [Fluviicola taffensis DSM 16823]
gi|327318356|gb|AEA42848.1| ATP-dependent DNA helicase RecQ [Fluviicola taffensis DSM 16823]
Length = 726
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 117/330 (35%), Positives = 171/330 (51%), Gaps = 50/330 (15%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DRVRSVLKS 61
++ L+ F F+ +Q I L KK+ +IMPT S +++ S
Sbjct: 6 LKEALRKFFGFDQFKGHQEKIITNVLQKKNTFVIMPTGGGKSLCYQLPALLSEGTAIVVS 65
Query: 62 KFNLTDFRPNQLAAI-NIALLKKDAIIIMPTGKLLKKKKICLMTE---SSSLKLLYVSPE 117
L NQ+ AI N++ A + + L K +I + E + KLLYV+PE
Sbjct: 66 P--LIALMKNQVDAIRNVSDHNSIAHFLNSS---LSKTEINRVKEDILAGKTKLLYVAPE 120
Query: 118 KLAKSKS--FMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
L K ++ F+T + ++ AIDE HC S WGHDFRP+Y+ L + DV I
Sbjct: 121 SLTKQENIDFLTSVP-------ISFFAIDEAHCISEWGHDFRPEYRRLREIFEKISDVAI 173
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATAT KV D+QK L + D + K+ FNR NL+YE+R K +K+ + + R
Sbjct: 174 IALTATATPKVQADIQKNLNMMDADLFKSSFNRDNLYYEIRAKQNVEKEIIKYI-----R 228
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------ 277
+ +SGIIY S K+ E+ E L+ G+ AYHA L++
Sbjct: 229 QREGKSGIIYCLSRKKVEETAELLQVNGINALAYHAGLDATTRARHQDMFLMEEVDVIVA 288
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 289 TIAFGMGIDKPDVRFVIHHDIPKSLESYYQ 318
>gi|312091032|ref|XP_003146836.1| RecQ helicase [Loa loa]
Length = 970
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 113/321 (35%), Positives = 152/321 (47%), Gaps = 74/321 (23%)
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK------------------------ 93
VLKS+F FR Q AI ALL D I+MPTG
Sbjct: 282 VLKSRFGFNQFRHRQKHAIIAALLGYDCFILMPTGAGKSLCYQLPAVLSEGVTVVISPLK 341
Query: 94 --------LLKKKKIC-------------------LMTESSSLKLLYVSPEKLAKSKSFM 126
+K+ +IC L S +KLLYV+PEK+A S+
Sbjct: 342 SLIEDQKMKMKELEICCYALTSELSQAESDRIYGMLNENSPKIKLLYVTPEKIAASEKLN 401
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF--PDVPILGLTATATT 184
+++ G L R +DE HC S WGHDFRPDY L L+ MF P VP++ LTATAT
Sbjct: 402 NVFHSLHRRGLLTRFVVDEAHCVSQWGHDFRPDYTKLQSLRRMFTNPVVPVMALTATATP 461
Query: 185 KVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGII 244
K++ D + L I+ + + F R NL Y+V K L ++ D M + +SGI+
Sbjct: 462 KIVTDTRVHLAIQQSKLFISSFVRTNLKYDVIAKGPRS---LLKVMDRMKILYPGKSGIV 518
Query: 245 YTTSIKECEDLREELRNRGLRVSAYHAKLES---------------NV---SIAFGLGID 286
Y S K+CE + + L + + YHA L NV +IAFG+GID
Sbjct: 519 YCLSRKDCESVAKMLESHSMSSEVYHAGLSDKKRLEVQTRWINNRVNVICATIAFGMGID 578
Query: 287 KPNVRFVIHHCLSKSMENFYQ 307
KP+VRFVIH + KS+E +YQ
Sbjct: 579 KPDVRFVIHFSIPKSIEGYYQ 599
>gi|423123017|ref|ZP_17110701.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5246]
gi|376391770|gb|EHT04440.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5246]
Length = 608
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 170/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q I+ AL +D +++MPT S + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQETIIDTALGGRDCLVVMPTGGGKSLCYQVPALVLGGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T +++++ S ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQQEVMAGCRSGQIRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L LA +A+DE HC S WGHDFRP+Y L L+ P +P + LTA
Sbjct: 128 LD-NFLEHLSHWN----LAMVAVDEAHCISQWGHDFRPEYAALGQLRQRVPQIPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRYMLMEKFKP------LDQLMRYVQDQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE++V ++A
Sbjct: 236 GKSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|372209002|ref|ZP_09496804.1| ATP-dependent DNA helicase RecQ [Flavobacteriaceae bacterium S85]
Length = 734
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 129/218 (59%), Gaps = 31/218 (14%)
Query: 110 KLLYVSPEKLAKSK--SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
KLLYV+PE L K + F+ K + ++ AIDE HC S WGHDFRP+Y+ L +
Sbjct: 115 KLLYVAPESLTKDEYVDFLKKQK-------ISFFAIDEAHCISEWGHDFRPEYRNLRRII 167
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLD 227
T DVPI+GLTATAT KV D+ K L + + KA FNRPNLFYEVR K KD
Sbjct: 168 TRIGDVPIIGLTATATPKVQEDIIKTLGMTNANTFKASFNRPNLFYEVRPK---TKDVTS 224
Query: 228 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---------- 277
++ + +R +SG+IY S K+ E++ + L+ G+ YHA L++
Sbjct: 225 DIIRFIRQRL-GKSGVIYCLSRKKVEEIAQTLQVNGISALPYHAGLDAKTRAKHQDMFLM 283
Query: 278 --------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 284 EDVDVIVATIAFGMGIDKPDVRFVIHHDIPKSLESYYQ 321
>gi|398799825|ref|ZP_10559106.1| ATP-dependent DNA helicase RecQ [Pantoea sp. GM01]
gi|398097370|gb|EJL87679.1| ATP-dependent DNA helicase RecQ [Pantoea sp. GM01]
Length = 608
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 108/327 (33%), Positives = 168/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS----VLK 60
+ VL+ F FRP Q I AL +D +++MPT Y VR V+
Sbjct: 13 AQQVLQDTFGYQQFRPGQQNIIETALAGRDCLVVMPTGGGKSLCYQIPALVREGLTLVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T +++++ S LKLLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQTREQQQQVFADCRSGKLKLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L + +A+DE HC S WGHDFRP+Y + L+ FP +P++ LTA
Sbjct: 128 MD-NFLDSLHQWNPV----MLAVDEAHCISQWGHDFRPEYGSIGQLRQHFPHLPVMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ +LQ++D ++ + F+RPN+ Y + + KP Q L + D R
Sbjct: 183 TADETTRNDIAHLLQMDDPLIQISSFDRPNIRYTLVEKFKPTEQ--LLRYVQDQ-----R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIA 280
+SGIIY S + ED L++RGL V AYHA ++S ++A
Sbjct: 236 GKSGIIYCNSRAKVEDTAARLQSRGLSVGAYHAGIDSAQRASVQEAFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|393911582|gb|EJD76373.1| CBR-HIM-6 protein [Loa loa]
Length = 1044
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 111/321 (34%), Positives = 150/321 (46%), Gaps = 74/321 (23%)
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL----------------------- 94
VLKS+F FR Q AI ALL D I+MPTG
Sbjct: 282 VLKSRFGFNQFRHRQKHAIIAALLGYDCFILMPTGAGKSLCYQLPAVLSEGVTVVISPLK 341
Query: 95 ---------LKKKKIC-------------------LMTESSSLKLLYVSPEKLAKSKSFM 126
+K+ +IC L S +KLLYV+PEK+A S+
Sbjct: 342 SLIEDQKMKMKELEICCYALTSELSQAESDRIYGMLNENSPKIKLLYVTPEKIAASEKLN 401
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF--PDVPILGLTATATT 184
+++ G L R +DE HC S WGHDFRPDY L L+ MF P VP++ LTATAT
Sbjct: 402 NVFHSLHRRGLLTRFVVDEAHCVSQWGHDFRPDYTKLQSLRRMFTNPVVPVMALTATATP 461
Query: 185 KVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGII 244
K++ D + L I+ + + F R NL Y+V K L ++ D M + +SGI+
Sbjct: 462 KIVTDTRVHLAIQQSKLFISSFVRTNLKYDVIAKGPRS---LLKVMDRMKILYPGKSGIV 518
Query: 245 YTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGID 286
Y S K+CE + + L + + YHA L +IAFG+GID
Sbjct: 519 YCLSRKDCESVAKMLESHSMSSEVYHAGLSDKKRLEVQTRWINNRVNVICATIAFGMGID 578
Query: 287 KPNVRFVIHHCLSKSMENFYQ 307
KP+VRFVIH + KS+E +YQ
Sbjct: 579 KPDVRFVIHFSIPKSIEGYYQ 599
>gi|443316688|ref|ZP_21046123.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 6406]
gi|442783715|gb|ELR93620.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 6406]
Length = 720
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 160/328 (48%), Gaps = 77/328 (23%)
Query: 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---------------------- 92
+ + LK F FR Q AAI L ++DA+++MPTG
Sbjct: 12 LEAALKHFFGYDQFRLQQRAAIEAVLNQQDALVVMPTGGGKSLCYQLPALLRLGVTIVVS 71
Query: 93 ----------KLLKKKKICLMTESSSL-----------------KLLYVSPEKLAKSK-- 123
+ L I +SSL KLLYV+PE+L
Sbjct: 72 PLIALMQDQVEALNNNGIAATFLNSSLDLMEARSREYDLLQGRTKLLYVAPERLLSENFW 131
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
F+T+LQ+ LA AIDE HC S WGHDFRP+Y+ L L++ F +P+L LTATAT
Sbjct: 132 PFLTRLQQQVG---LAGFAIDEAHCVSEWGHDFRPEYRQLHRLRSAFAGIPMLALTATAT 188
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
+V D+ + LQ++ V+ A FNRPNL+YEVR K L L + N +GI
Sbjct: 189 ERVRQDIVQQLQLQKPEVLVASFNRPNLYYEVRPKDRQTYGHL-----LQQVQSINGAGI 243
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKL------ESN------------VSIAFGLGI 285
IY S K +++ L+N G+ YHA L E+ +IAFG+GI
Sbjct: 244 IYCLSRKRVDEIALRLQNDGIAALPYHAGLPDLTRAENQRRFIRDDVRVMVATIAFGMGI 303
Query: 286 DKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+KP+VRFV+H+ L +++E++YQ S G
Sbjct: 304 NKPDVRFVVHYDLPRTLESYYQESGRAG 331
>gi|344201636|ref|YP_004786779.1| RecQ familyATP-dependent DNA helicase [Muricauda ruestringensis DSM
13258]
gi|343953558|gb|AEM69357.1| ATP-dependent DNA helicase, RecQ family [Muricauda ruestringensis
DSM 13258]
Length = 733
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 120/331 (36%), Positives = 170/331 (51%), Gaps = 50/331 (15%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DRVRSVLKS 61
+ S LK F + F+ Q I L D +IMPT S + +++ S
Sbjct: 8 LHSSLKKYFGFSKFKGLQEDVIQNILSGNDTFVIMPTGGGKSLCYQLPAIMEEGTAIVVS 67
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKK--KKICLMTESSSLKLLYVSPEKL 119
L NQ+ AI + ++ I + L K +++ KLLYV+PE L
Sbjct: 68 P--LIALMKNQVDAIR-GISEQHGIAHVLNSSLTKTEVRQVKEDITKGVTKLLYVAPESL 124
Query: 120 AKSKS--FMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPIL 176
K ++ F+ ++ L+ +A+DE HC S WGHDFRP+Y+ L I+ + ++PI+
Sbjct: 125 TKEENVDFLKNVK-------LSFVAVDEAHCISEWGHDFRPEYRNLRGIINRLGDNIPII 177
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT KV D+ K L + D V KA FNRPNLFYEVR K D AD++
Sbjct: 178 GLTATATPKVQEDIIKNLGMTDAKVFKASFNRPNLFYEVRPKTK------DVDADIIRFV 231
Query: 237 FRNQ--SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------- 277
+NQ SGIIY S K E+L + L+ G+ YHA ++
Sbjct: 232 KQNQGKSGIIYCLSRKRVEELAQVLQVNGVSAVPYHAGFDAKTRSKYQDMFLMEEVDVVV 291
Query: 278 -SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 292 ATIAFGMGIDKPDVRFVIHHDIPKSIESYYQ 322
>gi|435850506|ref|YP_007312092.1| ATP-dependent DNA helicase RecQ [Methanomethylovorans hollandica
DSM 15978]
gi|433661136|gb|AGB48562.1| ATP-dependent DNA helicase RecQ [Methanomethylovorans hollandica
DSM 15978]
Length = 692
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 116/328 (35%), Positives = 166/328 (50%), Gaps = 43/328 (13%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKF 63
L+ F FRP Q I + KD ++MPT S + V V+
Sbjct: 4 TLRKYFGYDTFRPLQEDIIKDVIAGKDVFVLMPTGGGKSICYQLPALLMNGVTVVVSPLI 63
Query: 64 NLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSK 123
+L + + L A + +A + T + +I E++ +KLLYV+PE+L S
Sbjct: 64 SLMKDQVDTLRANGV-----EAAYLNSTLSYKESNQIKQELENNIIKLLYVAPERLTLSS 118
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
+ + + AIDE HC S WGHDFRP+Y+ LSILK +P +PI+ LTATAT
Sbjct: 119 TLTLLDRIK-----VNLFAIDESHCISEWGHDFRPEYRKLSILKRKYPHIPIIALTATAT 173
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
KV D L IEDC A FNR NL Y+VR K K+ +++ + + +R +++SGI
Sbjct: 174 PKVRKDTISQLHIEDCNTYVASFNRKNLLYQVRPK----KETYEQIVEFLRKR-KDKSGI 228
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGI 285
IY S K ++L +LR G YHA L +IAFG+GI
Sbjct: 229 IYCQSRKTVDELTGKLRKSGFNALPYHAGLSDAARSRNQDIFIKDDAEIIVATIAFGMGI 288
Query: 286 DKPNVRFVIHHCLSKSMENFYQVSIAFG 313
DKPNVRFVIH+ L +++E++YQ + G
Sbjct: 289 DKPNVRFVIHYDLPRNLESYYQETGRGG 316
>gi|365875470|ref|ZP_09414998.1| ATP-dependent DNA helicase RecQ [Elizabethkingia anophelis Ag1]
gi|442588734|ref|ZP_21007544.1| ATP-dependent DNA helicase RecQ [Elizabethkingia anophelis R26]
gi|365756729|gb|EHM98640.1| ATP-dependent DNA helicase RecQ [Elizabethkingia anophelis Ag1]
gi|442561492|gb|ELR78717.1| ATP-dependent DNA helicase RecQ [Elizabethkingia anophelis R26]
Length = 735
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 113/329 (34%), Positives = 166/329 (50%), Gaps = 42/329 (12%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DRVRSV 58
S + LK F T F+ Q I+ L D ++MPT S ++
Sbjct: 5 SANIAESLKKYFGFTTFKGYQEQIISSLLEGSDVFVLMPTGGGKSLCYQLPALMSEGTAI 64
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE--SSSLKLLYVSP 116
+ S L NQ+ A+N L ++ + + L K + +M + + KLLYV+P
Sbjct: 65 VVSP--LIALMKNQVDAVN-GLSSEEGVAHVLNSSLNKTQTKTVMDDIRNGRTKLLYVAP 121
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
E L K + +K ++ AIDE HC S WGHDFRP+Y+ L + DVP++
Sbjct: 122 ESLIKEEYI-----DFFKEVPISFFAIDEAHCISEWGHDFRPEYRNLKSIIDKIADVPVI 176
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATAT KV D+QK L + + +V K FNRPNLFYEVR K K+ + + +
Sbjct: 177 ALTATATPKVQDDIQKTLGMTNALVYKESFNRPNLFYEVRPKVNIDKEIVKFI-----KA 231
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------S 278
+SGI+Y S ++ E+ + L+ GL YHA L++ +
Sbjct: 232 QNGKSGIVYCLSRRKVEEFAQLLQVNGLNALPYHAGLDAKTRVANQDKFLMEEVDVIVAT 291
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
IAFG+GIDKP+VRFVIH+ + KS+E++YQ
Sbjct: 292 IAFGMGIDKPDVRFVIHYDIPKSLESYYQ 320
>gi|322421607|ref|YP_004200830.1| ATP-dependent DNA helicase RecQ [Geobacter sp. M18]
gi|320127994|gb|ADW15554.1| ATP-dependent DNA helicase RecQ [Geobacter sp. M18]
Length = 598
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 109/331 (32%), Positives = 168/331 (50%), Gaps = 61/331 (18%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YPWSDRVRSVLK 60
+L F FRP Q + L KDA ++MPT P + V S L
Sbjct: 8 ILNDIFGYKAFRPRQQEIVETVLAGKDAFVLMPTGGGKSLCYQVPALCLPGTALVVSPLI 67
Query: 61 S--KFNLTDFRPNQLAAI--NIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSP 116
S K + R N +AA N AL + +A +++ + LKLLYV+P
Sbjct: 68 SLMKDQVDALRENGVAAACYNSALGEAEA------------RRVLAELHAGELKLLYVAP 115
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
E+L S F+ +++ + ++ AIDE HC S WGHDFRP+Y L +L+ +FP +P++
Sbjct: 116 ERLL-SDGFLERIKTL----PISLFAIDEAHCVSQWGHDFRPEYAQLGVLREIFPQIPMI 170
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMS 234
LTATA + D+ L +ED A F+RPN+ Y V + KP ++L ++
Sbjct: 171 ALTATADAQTKGDILSRLGLEDAACFFAGFDRPNIRYGVMEKNKP------FNQLTAFLA 224
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------ 276
R ++++GI+Y S K E++ +L G++ +AYHA L
Sbjct: 225 TR-KDEAGIVYALSRKRVEEVARKLCGAGIKAAAYHAGLPDKERHQVQEAFLRDDVKIVV 283
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GIDK NVRFV+H+ + KS+E++YQ
Sbjct: 284 ATVAFGMGIDKSNVRFVVHYDMPKSIESYYQ 314
>gi|283787504|ref|YP_003367369.1| ATP-dependent DNA helicase [Citrobacter rodentium ICC168]
gi|282950958|emb|CBG90635.1| ATP-dependent DNA helicase [Citrobacter rodentium ICC168]
Length = 609
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 171/327 (52%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q A I+ + +D +++MPT S + + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQEAIIDTVMSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ S ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQTREQQLEVMAGCRSGKIRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L A +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 128 LD-NFLEHLAHWNPA----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA LD+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADETTRLDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RGL +AYHA LE++V ++A
Sbjct: 236 GKSGIIYCNSRAKVEDTAARLQSRGLSAAAYHAGLENHVRADVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|34495932|ref|NP_900147.1| ATP-dependent DNA helicase RecQ [Chromobacterium violaceum ATCC
12472]
gi|34101786|gb|AAQ58154.1| ATP-dependent DNA helicase recQ [Chromobacterium violaceum ATCC
12472]
Length = 609
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 111/329 (33%), Positives = 159/329 (48%), Gaps = 42/329 (12%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
S+L F +FR Q + A+++MPT S D V V+
Sbjct: 17 SILNHIFGYPEFRGQQQEIVEQVAHGGHALVLMPTGGGKSLCYQIPALLRDGVAIVVSPL 76
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
L + L + +A A + + + I + +L LLYV+PE+L
Sbjct: 77 IALMQDQVATLQELGVA-----AACLNSATSPDEARDIARQARAGTLDLLYVAPERL--- 128
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+ Q+ + +A AIDE HC S WGHDFRP+YQ L +L FP VP + LTATA
Sbjct: 129 --LTPRFQEFIASLKIALFAIDEAHCVSHWGHDFRPEYQQLGLLAEQFPQVPRIALTATA 186
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSG 242
+ LD+ L++ + V + F+RPNLFY+V K A+K +L D + + + +G
Sbjct: 187 DEQTRLDIIHYLKLAEARVFLSSFDRPNLFYQVVEKHNAKK----QLLDFIRQEHQGATG 242
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKL-----ESN-------------VSIAFGLG 284
I+Y S K ED + LR G+ AYHA + E+N ++AFG+G
Sbjct: 243 IVYCLSRKRVEDTAQWLRENGIEALAYHAGMSHAEREANQRLFLREDGIVMVATVAFGMG 302
Query: 285 IDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
IDKP+VRFV H + KS ENFYQ S G
Sbjct: 303 IDKPDVRFVAHIDMPKSPENFYQESGRAG 331
>gi|152972806|ref|YP_001337952.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|329997483|ref|ZP_08302785.1| ATP-dependent DNA helicase RecQ [Klebsiella sp. MS 92-3]
gi|449059651|ref|ZP_21737339.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae hvKP1]
gi|150957655|gb|ABR79685.1| ATP-dependent DNA helicase [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|328539051|gb|EGF65090.1| ATP-dependent DNA helicase RecQ [Klebsiella sp. MS 92-3]
gi|448874669|gb|EMB09708.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae hvKP1]
Length = 608
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q I AL +D +++MPT S + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQETIIETALEGRDCLVVMPTGGGKSLCYQVPALVMGGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T +++++ S ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQQEVMAGCRSGQVRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L LA +A+DE HC S WGHDFRP+Y L L+ P +P + LTA
Sbjct: 128 LD-NFLEHLANWN----LAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPQIPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE++V ++A
Sbjct: 236 GKSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENDVRAEVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|381186153|ref|ZP_09893727.1| ATP-dependent DNA helicase RecQ [Flavobacterium frigoris PS1]
gi|379651827|gb|EIA10388.1| ATP-dependent DNA helicase RecQ [Flavobacterium frigoris PS1]
Length = 731
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 115/323 (35%), Positives = 166/323 (51%), Gaps = 43/323 (13%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFN 64
LK F + F+ Q I L +++ +IMPT S D V+
Sbjct: 12 LKKYFGFSQFKGLQEQVIKSLLDRQNTFVIMPTGGGKSLCYQLPALTQDGTAIVVSP--- 68
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS--LKLLYVSPEKLAKS 122
L NQ+ AI +L ++ I + L K + + + +S KLLYV+PE L K
Sbjct: 69 LIALMKNQVDAIR-SLSSENGIAHVLNSSLTKTEITQVKKDITSGLTKLLYVAPESLTKE 127
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
++ K ++ +AIDE HC S WGHDFRP+Y+ L + D+PI+GLTATA
Sbjct: 128 ENV-----NFLKTVKISFVAIDEAHCISEWGHDFRPEYRNLKHIIKQLGDLPIIGLTATA 182
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSG 242
T KV D+ K L + D KA FNRPNL+YEVR K K+ ++ + ++ + +SG
Sbjct: 183 TPKVQEDILKNLDMCDATTFKASFNRPNLYYEVRTKT---KNVESDIIRFI-KQHKGKSG 238
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 284
IIY S K+ E + L+ G+ YHA L++ +IAFG+G
Sbjct: 239 IIYCLSRKKVEAIAHVLQVNGISAVPYHAGLDAKTRARHQDMFLMEDVDVVVATIAFGMG 298
Query: 285 IDKPNVRFVIHHCLSKSMENFYQ 307
IDKP+VRFVIHH + KS+E++YQ
Sbjct: 299 IDKPDVRFVIHHDIPKSLESYYQ 321
>gi|282880882|ref|ZP_06289575.1| ATP-dependent DNA helicase RecQ [Prevotella timonensis CRIS 5C-B1]
gi|281305264|gb|EFA97331.1| ATP-dependent DNA helicase RecQ [Prevotella timonensis CRIS 5C-B1]
Length = 725
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 112/320 (35%), Positives = 165/320 (51%), Gaps = 37/320 (11%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-----LTD 67
LK F F+ Q A IN L A ++MPT S ++ S+L L
Sbjct: 11 LKLYFGFDSFKGEQEAIINHLLAGNSAFVLMPTGGGKSLCYQLPSLLMEGTAIVVSPLIA 70
Query: 68 FRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE--SSSLKLLYVSPEKLAKSKSF 125
NQ+ IN + +++ + L K +M + + KLLYV+PE L K ++
Sbjct: 71 LMKNQVDVIN-GISEEEGVAHFLNSSLNKAAIQQVMDDVRAGRTKLLYVAPESLNKEENI 129
Query: 126 MTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTK 185
+ +K ++ AIDE HC S WGHDFRP+Y+ + D P++ LTATAT K
Sbjct: 130 -----EFFKTVKISFYAIDEAHCISEWGHDFRPEYRNIRPTINKIGDAPVIALTATATDK 184
Query: 186 VMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIY 245
V D+++ L I D K+ FNRPNL+YE+R K + +D+ + R+ +SGIIY
Sbjct: 185 VRTDIKRSLGIADAREFKSSFNRPNLYYEIRQKSSD----IDKQIIMFIRQHEGKSGIIY 240
Query: 246 TTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDK 287
S K+ E+L E L+ ++ + YHA L+S +IAFG+GIDK
Sbjct: 241 CLSRKKVEELSEVLKANNIKAAPYHAGLDSVTRSQTQDDFLMERIDVIVATIAFGMGIDK 300
Query: 288 PNVRFVIHHCLSKSMENFYQ 307
P+VRFVIH+ + KS+E +YQ
Sbjct: 301 PDVRFVIHYDIPKSLEGYYQ 320
>gi|375149593|ref|YP_005012034.1| ATP-dependent DNA helicase RecQ [Niastella koreensis GR20-10]
gi|361063639|gb|AEW02631.1| ATP-dependent DNA helicase RecQ [Niastella koreensis GR20-10]
Length = 763
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 117/334 (35%), Positives = 171/334 (51%), Gaps = 48/334 (14%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSDRVRS 57
S + L+ +F F+ NQ A I L KD +I PT S+ V
Sbjct: 35 SASLHQALQEQFGFDHFKGNQEAIIKTLLAGKDTFVIKPTGGGKSLCYQLPAIMSEGVAI 94
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE---SSSLKLLYV 114
++ L NQ+ + K D + + L KK+I + + S K+LYV
Sbjct: 95 IISP---LIALMKNQVDLVRSYSSKDDVAHFLNS--TLTKKEIREVHDDLLSGRTKMLYV 149
Query: 115 SPEKLAKSKS--FMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF-P 171
+PE L K ++ F + L+ L+ A+DE HC S WGHDFRP+Y+ L + T P
Sbjct: 150 APETLTKQENLEFFSDLK-------LSFFAVDEAHCISEWGHDFRPEYRRLREMMTQINP 202
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
D+P++ LTATAT KV D+ K L ++D + + FNRPNL+YE I+P +KD +
Sbjct: 203 DIPVIALTATATPKVQSDIIKNLALKDPEIYISSFNRPNLYYE--IQPKIKKDQTIKNIV 260
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------------- 277
+ +SGIIYT + K E+L + L G++ AYHA L+S +
Sbjct: 261 RFIVSMKGKSGIIYTLNRKTTEELADMLMANGIKAVAYHAGLDSKLRAERQDLFLNEDVQ 320
Query: 278 ----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP++RFVIH + KS+EN+YQ
Sbjct: 321 VIVATIAFGMGIDKPDIRFVIHFNIPKSIENYYQ 354
>gi|402492603|ref|ZP_10839363.1| ATP-dependent DNA helicase RecQ [Aquimarina agarilytica ZC1]
Length = 728
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 170/329 (51%), Gaps = 44/329 (13%)
Query: 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DRVRSVLK 60
++ LK F + FR Q I L K+D +IMPT S +++
Sbjct: 5 ELQKALKKYFGFSQFRGLQEQVIKSLLKKEDTFVIMPTGGGKSLCYQLPALMSEGTAIVV 64
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS--LKLLYVSPEK 118
S L NQ+ AI ++ ++ I + L K + + S+ KLLYV+PE
Sbjct: 65 SP--LIALMKNQVDAIR-SISSENGIAHVLNSSLNKTDVATVKADISNGITKLLYVAPES 121
Query: 119 LAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLS-ILKTMFPDVPILG 177
L K + + + ++ +A+DE HC S WGHDFRP+Y+ L I++++ ++PI+G
Sbjct: 122 LVKEE-----YAEFLASQTISFLAVDEAHCISEWGHDFRPEYRNLRRIIQSIGDNIPIIG 176
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPA-AQKDCLDELADLMSRR 236
LTATAT KV D+ K L I KA FNRPNLFYEVR K A + D + ++
Sbjct: 177 LTATATPKVQEDILKNLGISGANTFKASFNRPNLFYEVRPKTANVETDII-----RFVKQ 231
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------S 278
+SGIIY S K E+L + L+ G+ YHA L++ +
Sbjct: 232 NTGKSGIIYCLSRKRVEELAQALQVNGINAVPYHAGLDAKTRAKHQDMFLMEDVDVVVAT 291
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
IAFG+GIDKP+VRFV+H+ + KS+E++YQ
Sbjct: 292 IAFGMGIDKPDVRFVVHYDIPKSIESYYQ 320
>gi|386823577|ref|ZP_10110722.1| ATP-dependent DNA helicase RecQ [Serratia plymuthica PRI-2C]
gi|386379516|gb|EIJ20308.1| ATP-dependent DNA helicase RecQ [Serratia plymuthica PRI-2C]
Length = 610
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 108/325 (33%), Positives = 168/325 (51%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q IN A+ D +++MPT S D + V+
Sbjct: 15 QVLRDTFGYQQFRPGQQTIINAAIGGLDCLVVMPTGGGKSLCYQIPALVMDGLTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A ++ A T ++ ++ S +K+LY++PE+L
Sbjct: 75 ISLMKDQVDQLLAYGVS-----AACYNSTQTREQQLEVMAGCRSGQIKMLYIAPERLMMD 129
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
SF+ L A +A+DE HC S WGHDFRP+Y+ L LK FP +P++ LTATA
Sbjct: 130 -SFLDLLDHCPPA----LLAVDEAHCISQWGHDFRPEYRALGQLKQRFPTMPVIALTATA 184
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L + D +V + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 185 DESTRGDIVRLLALHDPLVQVSSFDRPNIRYTLVEKFKP------LDQLWRFVQDQ-RGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S + ED L++RGL V AYHA L+++ ++AFG
Sbjct: 238 SGIIYCNSRAKVEDTTARLQSRGLSVGAYHAGLDNDRRAQVQEAFQRDDLQVVVATVAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|221487012|gb|EEE25258.1| ATP-dependent DNA helicase, putative [Toxoplasma gondii GT1]
Length = 902
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 115/354 (32%), Positives = 175/354 (49%), Gaps = 50/354 (14%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRS----------V 58
+R+ + LK+ F FR Q A+ L KDA++IMPT S +
Sbjct: 10 ERLLTTLKNAFGYNSFREGQEQAVRAILDGKDALVIMPTGGGKSLTYLLPGLLLPGLVII 69
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEK 118
+ L D + +L ++ + ++++ P+ + +++ L++ S L+ P
Sbjct: 70 VSPLLALMDDQVRRLQERHLPAVAFNSLL-SPSQRNTILQELPLLSFPSYENLVSPPPSS 128
Query: 119 LAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGL 178
+ S S + + ++ +A IA+DE HC S+WGHDFR Y+ LS+L+T+ P+ P L
Sbjct: 129 SSSSTSSFSSTSNVRRSRGVALIAVDEAHCISTWGHDFRRSYRNLSVLRTILPETPFLAC 188
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIK----------------PAAQ 222
TATAT V D+Q L + D V I+ F+R N+FYEVR+K PAA
Sbjct: 189 TATATPAVCADIQTSLALRDAVHIRLSFDRKNIFYEVRLKRRLGARTEDDAVPDEDPAAA 248
Query: 223 KD-----CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL---- 273
D L+++A ++ R + GIIY CE + LR RG+ AYHA L
Sbjct: 249 ADEEEDWTLEDMAAEVATRHHGECGIIYCFKKATCESVAAALRCRGIPAQAYHAGLSDKV 308
Query: 274 ---------ESNV-----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
E N+ ++AFGLG+D P+VRFV HH L K+ME +YQ S G
Sbjct: 309 RCELQRGWMEGNIRVLVATVAFGLGVDNPHVRFVFHHSLPKTMEGYYQESGRCG 362
>gi|120434956|ref|YP_860642.1| ATP-dependent DNA helicase RecQ [Gramella forsetii KT0803]
gi|117577106|emb|CAL65575.1| ATP-dependent DNA helicase RecQ [Gramella forsetii KT0803]
Length = 732
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 120/327 (36%), Positives = 167/327 (51%), Gaps = 50/327 (15%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSDRVRSVLKSKFN 64
LK F + F+ Q I + KD ++MPT SD V+
Sbjct: 12 LKRYFGFSQFKGLQEEVITSIVNGKDTFVVMPTGGGKSLCYQLPALISDGTAIVVSP--- 68
Query: 65 LTDFRPNQLAAI-NIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSK 123
L NQ+ AI +I+ A ++ + + K++ + KLLYV+PE L K
Sbjct: 69 LIALMKNQVDAIRSISSEHGVAHVLNSSLNKTEVKQVKDDISNGICKLLYVAPESLTKED 128
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLTATA 182
K +A +A+DE HC S WGHDFRP+Y+ L +ILK + ++P++GLTATA
Sbjct: 129 YV-----DFLKNQTIAFLAVDEAHCISEWGHDFRPEYRNLRNILKRIGDNIPVIGLTATA 183
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ-- 240
T KV D+ K L I D KA FNRPNL+YEVR K + AD+ RF Q
Sbjct: 184 TPKVQEDILKNLGITDAKTFKASFNRPNLYYEVRPKTKNIE------ADIT--RFVKQND 235
Query: 241 --SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIA 280
SGIIY S K+ E+L + L+ G++ YHA L++ +IA
Sbjct: 236 GKSGIIYCLSRKKVEELAQTLQVNGIKAVPYHAGLDAKKRSKHQDMFLMEDIDVVVATIA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 296 FGMGIDKPDVRFVIHHDIPKSIESYYQ 322
>gi|381402006|ref|ZP_09926893.1| ATP-dependent DNA helicase [Kingella kingae PYKK081]
gi|380832983|gb|EIC12864.1| ATP-dependent DNA helicase [Kingella kingae PYKK081]
Length = 796
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 110/331 (33%), Positives = 170/331 (51%), Gaps = 42/331 (12%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ +L + F DFR Q ++ ++A+++MPT S D V V+
Sbjct: 5 AQQILHNTFGYPDFRGRQGEIVDTVARGENALVLMPTGGGKSLCYQIPALLRDGVAIVVS 64
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
L D +Q+A + A + A+ +++++ + S SLKLLYV+PE+L
Sbjct: 65 PLIALMD---DQVANLRAAGVHSAAVHSGTPPEIVRQ--LADDIHSGSLKLLYVAPERLV 119
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
S+ F+ + ++ AIDE HC S WGHDFRP+YQ L +L +P+VP + LTA
Sbjct: 120 -SERFLRFMDNTN----VSLFAIDEAHCVSQWGHDFRPEYQQLGLLADRYPNVPRIALTA 174
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TA + D++ L++E + F+RPN++Y+V K +K +L D + R+ Q
Sbjct: 175 TADAETRADMKHYLKLETAAEFVSSFDRPNIYYQVIEKNNGKK----QLLDFIKRQMHGQ 230
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKL--------------ESNV----SIAFG 282
SGI+Y S K ED+ L GL YHA + E N+ ++AFG
Sbjct: 231 SGIVYCLSRKNVEDVAAFLCENGLNAVPYHAGMSLENRQQNQHRFTHEDNIIVVATVAFG 290
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+GIDKP+VRFV H + +S+E+FYQ S G
Sbjct: 291 MGIDKPDVRFVAHLDMPQSIEHFYQESGRAG 321
>gi|359449260|ref|ZP_09238757.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20480]
gi|392537893|ref|ZP_10285030.1| ATP-dependent DNA helicase [Pseudoalteromonas marina mano4]
gi|358044909|dbj|GAA75006.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20480]
Length = 607
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 110/336 (32%), Positives = 174/336 (51%), Gaps = 47/336 (13%)
Query: 2 LPNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--------- 52
LP+ + +VLK F ++FR Q A I+ AL +D ++++PT S
Sbjct: 6 LPSSTLVRKPETVLKQVFGYSEFRDGQKAVIDAALNAQDTLVLLPTGGGKSVCYQIPALV 65
Query: 53 -DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
+ V V+ +L + QL A+ + A + + +++++ +KL
Sbjct: 66 LEGVTIVISPLISLMQDQVAQLQALGV-----KAAYVNNSLAREEQQRVYQQLHQGLIKL 120
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEK+ + + F+ +L + ++ AIDE HC S WGHDFRP Y L+ LK F
Sbjct: 121 LYVAPEKVLQ-RDFLERLSHLK----ISLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFA 175
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFY--EVRIKPAAQKDCLDEL 229
VP++ LTATA D+ + L+++ + F+RPN+ Y E + KP Q L L
Sbjct: 176 HVPMMALTATADKATRFDIVEQLKLQQPYIHTGSFDRPNIRYTIEEKFKPMVQ--LLRYL 233
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------- 276
+ +NQSGIIY TS K +D+ E+L + GL +AYHA + +
Sbjct: 234 KEQ-----KNQSGIIYCTSRKRVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDD 288
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KPNVRFV+H+ + KS+E +YQ
Sbjct: 289 IQIVVATVAFGMGINKPNVRFVLHYDIPKSIEAYYQ 324
>gi|119470517|ref|ZP_01613220.1| ATP-dependent DNA helicase [Alteromonadales bacterium TW-7]
gi|119446218|gb|EAW27495.1| ATP-dependent DNA helicase [Alteromonadales bacterium TW-7]
Length = 607
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 110/336 (32%), Positives = 174/336 (51%), Gaps = 47/336 (13%)
Query: 2 LPNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--------- 52
LP+ + +VLK F ++FR Q A I+ AL +D ++++PT S
Sbjct: 6 LPSSTLVRKPETVLKQVFGYSEFRDGQKAVIDAALNAQDTLVLLPTGGGKSVCYQIPALV 65
Query: 53 -DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
+ V V+ +L + QL A+ + A + + +++++ +KL
Sbjct: 66 LEGVTIVISPLISLMQDQVAQLQALGV-----KAAYVNNSLAREEQQRVYQQLHQGLIKL 120
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEK+ + + F+ +L + ++ AIDE HC S WGHDFRP Y L+ LK F
Sbjct: 121 LYVAPEKVLQ-RDFLERLSHLK----ISLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFA 175
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFY--EVRIKPAAQKDCLDEL 229
VP++ LTATA D+ + L+++ + F+RPN+ Y E + KP Q L L
Sbjct: 176 HVPMMALTATADKATRFDIVEQLKLQQPYIHTGSFDRPNIRYTIEEKFKPMVQ--LLRYL 233
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------- 276
+ +NQSGIIY TS K +D+ E+L + GL +AYHA + +
Sbjct: 234 KEQ-----KNQSGIIYCTSRKRVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDD 288
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KPNVRFV+H+ + KS+E +YQ
Sbjct: 289 IQIVVATVAFGMGINKPNVRFVLHYDIPKSIEAYYQ 324
>gi|237831683|ref|XP_002365139.1| ATP-dependent DNA helicase, putative [Toxoplasma gondii ME49]
gi|211962803|gb|EEA97998.1| ATP-dependent DNA helicase, putative [Toxoplasma gondii ME49]
gi|221506695|gb|EEE32312.1| ATP-dependent DNA helicase, putative [Toxoplasma gondii VEG]
Length = 902
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 115/354 (32%), Positives = 175/354 (49%), Gaps = 50/354 (14%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRS----------V 58
+R+ + LK+ F FR Q A+ L KDA++IMPT S +
Sbjct: 10 ERLLTTLKNAFGYNSFREGQEQAVRAILDGKDALVIMPTGGGKSLTYLLPGLLLPGLVII 69
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEK 118
+ L D + +L ++ + ++++ P+ + +++ L++ S L+ P
Sbjct: 70 VSPLLALMDDQVRRLQERHLPAVAFNSLL-SPSQRNTILQELPLLSFPSYEDLVSPPPSS 128
Query: 119 LAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGL 178
+ S S + + ++ +A IA+DE HC S+WGHDFR Y+ LS+L+T+ P+ P L
Sbjct: 129 SSSSTSSFSSTSNVRRSRGVALIAVDEAHCISTWGHDFRRSYRNLSVLRTILPETPFLAC 188
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIK----------------PAAQ 222
TATAT V D+Q L + D V I+ F+R N+FYEVR+K PAA
Sbjct: 189 TATATPAVCADIQTSLALRDAVHIRLSFDRKNIFYEVRLKRRLGARTEDDAVPDEDPAAA 248
Query: 223 KD-----CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL---- 273
D L+++A ++ R + GIIY CE + LR RG+ AYHA L
Sbjct: 249 ADEEEDWTLEDMAAEVATRHHGECGIIYCFKKATCESVAAALRCRGIPAQAYHAGLSDKV 308
Query: 274 ---------ESNV-----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
E N+ ++AFGLG+D P+VRFV HH L K+ME +YQ S G
Sbjct: 309 RCELQRGWMEGNIRVLVATVAFGLGVDNPHVRFVFHHSLPKTMEGYYQESGRCG 362
>gi|194332913|ref|YP_002014773.1| ATP-dependent DNA helicase RecQ [Prosthecochloris aestuarii DSM
271]
gi|194310731|gb|ACF45126.1| ATP-dependent DNA helicase RecQ [Prosthecochloris aestuarii DSM
271]
Length = 617
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 111/323 (34%), Positives = 154/323 (47%), Gaps = 77/323 (23%)
Query: 52 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG------------------- 92
S V + L F FRPNQ + L +DA +MPTG
Sbjct: 11 SASVLNTLHKVFGFNAFRPNQGEVVQAILSGRDAFAVMPTGGGKSLCYQLPAVVMEGTCV 70
Query: 93 ----------------------------KLLKKKKICLMTE--SSSLKLLYVSPEKLAKS 122
L ++ +M+E S+ L LLYV+PE+ +
Sbjct: 71 VISPLIALMKDQVDGARVNGIRAAYLNSSLSPDEQSLVMSELTSNRLDLLYVAPERFS-- 128
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+ Q + K ++ IDE HC S WGHDFRPDY LS L +FPDVP+ TATA
Sbjct: 129 ---LEHFQTVLKEVKISMAVIDEAHCISEWGHDFRPDYLSLSALVELFPDVPVAAFTATA 185
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSG 242
T KV D+ + L + D V++A F+RPNL Y+VR K + ++L L+ + ++G
Sbjct: 186 THKVQADILRKLGLRDPFVVRASFDRPNLTYDVRFK----DNVSEQLVGLL-KSSPGKAG 240
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKL---------------ESNV---SIAFGLG 284
IIY TS K + L+ +G R YHA L E++V ++AFG+G
Sbjct: 241 IIYRTSRKSVNETTAMLQAKGFRALPYHAGLGDEERKKNQETFIRDEADVIVATVAFGMG 300
Query: 285 IDKPNVRFVIHHCLSKSMENFYQ 307
IDK N+RFVIH L KS+EN+YQ
Sbjct: 301 IDKSNIRFVIHADLPKSIENYYQ 323
>gi|269137489|ref|YP_003294189.1| ATP-dependent DNA helicase RecQ [Edwardsiella tarda EIB202]
gi|387866249|ref|YP_005697718.1| ATP-dependent DNA helicase RecQ [Edwardsiella tarda FL6-60]
gi|267983149|gb|ACY82978.1| ATP-dependent DNA helicase RecQ [Edwardsiella tarda EIB202]
gi|304557562|gb|ADM40226.1| ATP-dependent DNA helicase RecQ [Edwardsiella tarda FL6-60]
Length = 609
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 105/325 (32%), Positives = 164/325 (50%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VLK F FRP Q A + A+ +D +++MPT S D + V+
Sbjct: 15 GVLKDTFGYQQFRPGQQAIVEAAIAGRDCLVVMPTGGGKSLCYQIPALVRDGLTIVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A + +A + T +++ + S ++LLY++PE+L
Sbjct: 75 ISLMKDQVDQLQANGV-----NAACLNSTLNREQQQAVYAGCRSGEIRLLYIAPERL--- 126
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
M L +A+DE HC S WGHDFRP+Y L +K FP +P++ LTATA
Sbjct: 127 --MMDNLLDTLPQWNPTLLAVDEAHCISQWGHDFRPEYSALGQIKRRFPQMPVIALTATA 184
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ +L + D +V + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 185 DDATRQDILGLLDLRDPLVQVSSFDRPNIRYTLIEKFKP------LDQLWHFVQSQ-RGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S + ED L++RGL V AYHA L++ ++AFG
Sbjct: 238 SGIIYCNSRAKVEDTAARLQSRGLSVGAYHAGLDNGRRAEVQEAFQRDDLQIVVATVAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|391232165|ref|ZP_10268371.1| ATP-dependent DNA helicase RecQ [Opitutaceae bacterium TAV1]
gi|391221826|gb|EIQ00247.1| ATP-dependent DNA helicase RecQ [Opitutaceae bacterium TAV1]
Length = 620
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 109/323 (33%), Positives = 164/323 (50%), Gaps = 43/323 (13%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
+ L + F + FRP Q I +L +D ++PT S + V+
Sbjct: 6 NTLHTTFGYSGFRPLQREIIEASLAGRDVFALLPTGGGKSMCFQLPALHRTGLTVVVSPL 65
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
L + +QL A +A ++ + T + + L +LLYV+PE+L
Sbjct: 66 IALMKDQVDQLQAAGVAATYLNSSL---TSGEARSRLAGL--HRGEWRLLYVAPERL--- 117
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+ Q+ +A +A +AIDE HC S WGHDFRP+Y+ ++ L+ P+VP++ LTATA
Sbjct: 118 --MLDNWQENLRAWNVAALAIDEAHCISEWGHDFRPEYRQIARLREFLPEVPVMALTATA 175
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSG 242
T +V D+ K LQ+ + V A FNRPNL Y R+ P Q L ++ D + +R ++SG
Sbjct: 176 TGRVREDIVKHLQLREPAVYVASFNRPNLSY--RVLPKDQP--LKQIIDFVKKR-EDESG 230
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLG 284
IIY + E E L +RG YHA L ++ +IAFG+G
Sbjct: 231 IIYCATRATAEKTAESLASRGYAARPYHAGLSADDRSANQELFLRDDVKIICATIAFGMG 290
Query: 285 IDKPNVRFVIHHCLSKSMENFYQ 307
I+KPNVR+VIHH L K++E +YQ
Sbjct: 291 INKPNVRWVIHHDLPKNIEGYYQ 313
>gi|333925046|ref|YP_004498625.1| ATP-dependent DNA helicase RecQ [Serratia sp. AS12]
gi|333929999|ref|YP_004503577.1| ATP-dependent DNA helicase RecQ [Serratia plymuthica AS9]
gi|386326870|ref|YP_006023040.1| ATP-dependent DNA helicase RecQ [Serratia sp. AS13]
gi|333471606|gb|AEF43316.1| ATP-dependent DNA helicase RecQ [Serratia plymuthica AS9]
gi|333489106|gb|AEF48268.1| ATP-dependent DNA helicase RecQ [Serratia sp. AS12]
gi|333959203|gb|AEG25976.1| ATP-dependent DNA helicase RecQ [Serratia sp. AS13]
Length = 618
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 108/325 (33%), Positives = 168/325 (51%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q IN A+ D +++MPT S D + V+
Sbjct: 23 QVLRDTFGYQQFRPGQQTIINAAIGGLDCLVVMPTGGGKSLCYQIPALVMDGLTLVVSPL 82
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A ++ A T ++ ++ S +K+LY++PE+L
Sbjct: 83 ISLMKDQVDQLLAYGVS-----AACYNSTQTREQQLEVMAGCRSGQIKMLYIAPERLMMD 137
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
SF+ L A +A+DE HC S WGHDFRP+Y+ L LK FP +P++ LTATA
Sbjct: 138 -SFLDLLDHCPPA----LLAVDEAHCISQWGHDFRPEYRALGQLKQRFPTMPVIALTATA 192
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L + D +V + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 193 DESTRGDIVRLLALHDPLVQISSFDRPNIRYTLVEKFKP------LDQLWRFVQDQ-RGK 245
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S + ED L++RGL V AYHA L+++ ++AFG
Sbjct: 246 SGIIYCNSRAKVEDTTARLQSRGLSVGAYHAGLDNDRRSQVQEAFQRDDLQVVVATVAFG 305
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 306 MGINKPNVRFVVHFDIPRNIESYYQ 330
>gi|365091573|ref|ZP_09328928.1| ATP-dependent DNA helicase RecQ [Acidovorax sp. NO-1]
gi|363415884|gb|EHL23008.1| ATP-dependent DNA helicase RecQ [Acidovorax sp. NO-1]
Length = 623
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 162/324 (50%), Gaps = 36/324 (11%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS-----------DRVRSVLKS 61
+VL+ F FR Q A + + DA+++MPT S + R V
Sbjct: 6 TVLQDVFGYEQFRGPQQAIVEHVIGGGDALVLMPTGGGKSLCYQVPAIVRQQQGRGVTIV 65
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAK 121
L +Q+ A++ A + A + T + + + L ++ + LLY +PE+L
Sbjct: 66 VSPLIALMHDQVGALHEAGVS--AAFLNSTLSFDEAQDVELRLQTGDITLLYAAPERL-N 122
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
+ F+ L +Y+ G L+ AIDE HC S WGHDFRP+Y+ L++L + VP + LTAT
Sbjct: 123 TPRFLGLLDSLYQGGHLSLFAIDEAHCVSQWGHDFRPEYRALTVLHERYAGVPRIALTAT 182
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQS 241
A D+ + LQ+ED + + F+RPN+ Y + K KD +L + R ++
Sbjct: 183 ADDLTRADIIERLQLEDARLFISSFDRPNIRYRIEEK----KDVTTQLLRFIEREHAGEA 238
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGL 283
G++Y S K E+L L + G+ YHA L++ V +IAFG+
Sbjct: 239 GVVYCQSRKRVEELAATLCDAGITALPYHAGLDTKVRQKNQDRFLREEGIVMVATIAFGM 298
Query: 284 GIDKPNVRFVIHHCLSKSMENFYQ 307
GIDKP+VRFV H + K++E +YQ
Sbjct: 299 GIDKPDVRFVAHVDMPKNIEGYYQ 322
>gi|421781133|ref|ZP_16217606.1| ATP-dependent DNA helicase RecQ [Serratia plymuthica A30]
gi|407756805|gb|EKF66915.1| ATP-dependent DNA helicase RecQ [Serratia plymuthica A30]
Length = 610
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 108/325 (33%), Positives = 168/325 (51%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q IN A+ D +++MPT S D + V+
Sbjct: 15 QVLRDTFGYQQFRPGQQTIINAAIGGLDCLVVMPTGGGKSLCYQIPALVMDGLTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A ++ A T ++ ++ S +K+LY++PE+L
Sbjct: 75 ISLMKDQVDQLLAYGVS-----AACYNSTQTREQQLEVMAGCRSGQIKMLYIAPERLMMD 129
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
SF+ L A +A+DE HC S WGHDFRP+Y+ L LK FP +P++ LTATA
Sbjct: 130 -SFLDLLDHCPPA----LLAVDEAHCISQWGHDFRPEYRALGQLKQRFPTMPVIALTATA 184
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L + D +V + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 185 DESTRGDIVRLLALHDPLVQISSFDRPNIRYTLVEKFKP------LDQLWRFVQDQ-RGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S + ED L++RGL V AYHA L+++ ++AFG
Sbjct: 238 SGIIYCNSRAKVEDTTARLQSRGLSVGAYHAGLDNDRRAQVQEAFQRDDLQVVVATVAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|300771774|ref|ZP_07081645.1| ATP-dependent helicase RecQ [Sphingobacterium spiritivorum ATCC
33861]
gi|300761160|gb|EFK57985.1| ATP-dependent helicase RecQ [Sphingobacterium spiritivorum ATCC
33861]
Length = 729
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 110/324 (33%), Positives = 166/324 (51%), Gaps = 45/324 (13%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSDRVRSVLKSKFN 64
L+ F F+ +Q A I L KKD +IMPT S V+
Sbjct: 11 LQDFFGFDTFKGDQEAIITNVLNKKDTFVIMPTGGGKSICYQLPALMSQGTAIVISPLIA 70
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKK--KICLMTESSSLKLLYVSPEKLAKS 122
L + +QL A D+I L K + K+ KLLYV+PE L+K
Sbjct: 71 LMKNQVDQLRAFG----GTDSIAHFLNSSLNKGEITKVKQDVTQGKTKLLYVAPESLSKD 126
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLTAT 181
++ + + ++ +A+DE HC S WGHDFRP+Y+ + ++ + ++PI+ LTAT
Sbjct: 127 ENI-----EFLRQITVSFVAVDEAHCISEWGHDFRPEYRKIRQVINGIGENIPIIALTAT 181
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQS 241
AT KV D++K LQ+ D + K+ FNR NL+YEVR K K+ + E+ + + ++
Sbjct: 182 ATPKVQSDIRKNLQMTDATLFKSSFNRTNLYYEVRTK----KNVVKEIVRFI-KNNSGKT 236
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGL 283
GI+Y S K+ E++ E L G++ YHA L++ +IAFG+
Sbjct: 237 GIVYCLSRKKVEEIAEVLNINGIKALPYHAGLDAKTRADTQDKFLMEDVEVIVATIAFGM 296
Query: 284 GIDKPNVRFVIHHCLSKSMENFYQ 307
GIDKP+VR+VIHH + KSME +YQ
Sbjct: 297 GIDKPDVRYVIHHDIPKSMEGYYQ 320
>gi|300777720|ref|ZP_07087578.1| ATP-dependent helicase RecQ [Chryseobacterium gleum ATCC 35910]
gi|300503230|gb|EFK34370.1| ATP-dependent helicase RecQ [Chryseobacterium gleum ATCC 35910]
Length = 734
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 113/324 (34%), Positives = 167/324 (51%), Gaps = 46/324 (14%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DRVRSVLKSKFNL 65
LK F + F+ Q I+ L KD ++MPT S +++ S L
Sbjct: 12 LKKYFGFSTFKGQQEQIIDNLLGGKDIFVLMPTGGGKSLCYQLPALISEGTAIVVSP--L 69
Query: 66 TDFRPNQLAAINIALLKKDAIIIMPTGKLLKK--KKICLMTESSSLKLLYVSPEKLAKSK 123
NQ+ A+N L D + + L K K++ +S KLLYV+PE L K
Sbjct: 70 IALMKNQVDAVN-GLSSDDGVAHVLNSSLNKTQTKQVFDDIKSGKTKLLYVAPESLIKDD 128
Query: 124 --SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
F+ +++ ++ AIDE HC S WGHDFRP+Y+ L + +VP++ LTAT
Sbjct: 129 YLDFLKEVK-------ISFFAIDEAHCISEWGHDFRPEYRNLKQIIDKIANVPVIALTAT 181
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQS 241
AT KV D+QK L + + +V K FNRPNL+YEVR K K E+ +++ + +S
Sbjct: 182 ATPKVQDDIQKTLGMTNALVFKESFNRPNLYYEVRPKVNVDK----EIVKFINQH-KGKS 236
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGL 283
GI+Y S ++ E+ + L+ G+ YHA L+ V +IAFG+
Sbjct: 237 GIVYCLSRRKVEEFAQLLQVNGINALPYHAGLDQKVRVANQDKFLMEEVDVIVATIAFGM 296
Query: 284 GIDKPNVRFVIHHCLSKSMENFYQ 307
GIDKP+VRFVIH+ KS+E++YQ
Sbjct: 297 GIDKPDVRFVIHYDFPKSLESYYQ 320
>gi|302820099|ref|XP_002991718.1| hypothetical protein SELMODRAFT_41332 [Selaginella moellendorffii]
gi|300140567|gb|EFJ07289.1| hypothetical protein SELMODRAFT_41332 [Selaginella moellendorffii]
Length = 594
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 171/328 (52%), Gaps = 28/328 (8%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLT-- 66
+ +L+ F + FR QL AI L KD +MPT S ++ ++ K L
Sbjct: 1 LEELLQRYFGHSSFRGLQLDAIEAVLAGKDCFCMMPTGAGKSLCYQIPALAKPGIVLVVS 60
Query: 67 ---DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSK 123
+Q+AA+ + + + K+ K L + +LKLLYV+PE +A +
Sbjct: 61 PLIALMEDQVAALKSRQIFAEYLSSSQPVKMRNKIFEELQSGKPNLKLLYVTPESVA-TN 119
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
M KL+K+++ L+ IAIDE HC SSWGHDFRP Y+ LS L+T PD+PIL LTATA+
Sbjct: 120 HLMQKLRKLHERSLLSLIAIDEAHCISSWGHDFRPSYRKLSALRTSLPDIPILALTATAS 179
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
KV D+ K L ++ V+ + FNR N+FYEVR K K ++L ++++ + I
Sbjct: 180 KKVQEDIIKSLSLQKAAVLISSFNRANIFYEVRFKD-LMKSAYEDLRNIITTA-PTRCMI 237
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGI 285
IY + C+++ L++ G+ YHA + +IAFG GI
Sbjct: 238 IYCHARAMCDEIGSRLKSDGISCRVYHAGINVKARSQALQDWVLGEVHIIVATIAFGYGI 297
Query: 286 DKPNVRFVIHHCLSKSMENFYQVSIAFG 313
D+ +VR V H + KS+E+FYQ S G
Sbjct: 298 DRKDVRMVCHFNMPKSLESFYQESGRAG 325
>gi|270264266|ref|ZP_06192533.1| ATP-dependent DNA helicase RecQ [Serratia odorifera 4Rx13]
gi|270041915|gb|EFA15012.1| ATP-dependent DNA helicase RecQ [Serratia odorifera 4Rx13]
Length = 612
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 108/325 (33%), Positives = 168/325 (51%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q IN A+ D +++MPT S D + V+
Sbjct: 17 QVLRDTFGYQQFRPGQQTIINAAIGGLDCLVVMPTGGGKSLCYQIPALVMDGLTLVVSPL 76
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A ++ A T ++ ++ S +K+LY++PE+L
Sbjct: 77 ISLMKDQVDQLLAYGVS-----AACYNSTQTREQQLEVMAGCRSGQIKMLYIAPERLMMD 131
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
SF+ L A +A+DE HC S WGHDFRP+Y+ L LK FP +P++ LTATA
Sbjct: 132 -SFLDLLDHCPPA----LLAVDEAHCISQWGHDFRPEYRALGQLKQRFPTMPVIALTATA 186
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L + D +V + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 187 DESTRGDIVRLLALHDPLVQISSFDRPNIRYTLVEKFKP------LDQLWRFVQDQ-RGK 239
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S + ED L++RGL V AYHA L+++ ++AFG
Sbjct: 240 SGIIYCNSRAKVEDTTARLQSRGLSVGAYHAGLDNDRRAQVQEAFQRDDLQVVVATVAFG 299
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 300 MGINKPNVRFVVHFDIPRNIESYYQ 324
>gi|336171234|ref|YP_004578372.1| RecQ family ATP-dependent DNA helicase [Lacinutrix sp. 5H-3-7-4]
gi|334725806|gb|AEG99943.1| ATP-dependent DNA helicase, RecQ family [Lacinutrix sp. 5H-3-7-4]
Length = 730
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 112/328 (34%), Positives = 172/328 (52%), Gaps = 42/328 (12%)
Query: 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DRVRSVLK 60
+++ LK F ++F+ Q I L KK+ +IMPT S +++
Sbjct: 4 EIQAALKKHFGFSEFKGLQEKVIESILDKKNTFVIMPTGGGKSLCYQLPALMQEGTAIVV 63
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKK--KKICLMTESSSLKLLYVSPEK 118
S L NQ+ AI + + I + L K K++ + KLLYV+PE
Sbjct: 64 SP--LIALMKNQVDAIR-GVSDEHGIAHVLNSSLNKTEVKQVKEDITNGITKLLYVAPES 120
Query: 119 LAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILG 177
L K ++ + + ++ +A+DE HC S WGHDFRP+Y+ L +I++ + ++PI+G
Sbjct: 121 LTKEENV-----EFLRGVKISFMAVDEAHCISEWGHDFRPEYRNLRTIIQRIGDNIPIIG 175
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT KV D+ K L++ D KA FNRPNL+YEVR K +D ++
Sbjct: 176 LTATATPKVQEDILKNLRMTDAKTFKASFNRPNLYYEVRPKTK----TVDSDIIRFVKQN 231
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SI 279
++GI+Y S K E+L + L+ G++ YHA L++ +I
Sbjct: 232 SGKTGIVYCLSRKRVEELAQVLQVNGIKAVPYHAGLDAKTRAKHQDMFLMEDIDVVVATI 291
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
AFG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 292 AFGMGIDKPDVRFVIHHDIPKSIESYYQ 319
>gi|238892418|ref|YP_002917152.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|365144577|ref|ZP_09348793.1| ATP-dependent DNA helicase recQ [Klebsiella sp. 4_1_44FAA]
gi|378976322|ref|YP_005224463.1| ATP-dependent DNA helicase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|386037440|ref|YP_005957353.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae KCTC 2242]
gi|402783066|ref|YP_006638612.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|419976110|ref|ZP_14491512.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419981887|ref|ZP_14497157.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419987417|ref|ZP_14502537.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419992987|ref|ZP_14507936.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419999205|ref|ZP_14513983.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420004974|ref|ZP_14519604.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420010567|ref|ZP_14525038.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420016807|ref|ZP_14531094.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420022207|ref|ZP_14536378.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420027870|ref|ZP_14541857.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420033622|ref|ZP_14547424.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420039320|ref|ZP_14552956.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420045195|ref|ZP_14558666.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420051125|ref|ZP_14564416.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420056758|ref|ZP_14569910.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420061820|ref|ZP_14574803.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420068079|ref|ZP_14580864.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420073504|ref|ZP_14586129.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420079309|ref|ZP_14591756.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420085306|ref|ZP_14597536.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421908873|ref|ZP_16338705.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|421917229|ref|ZP_16346791.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|424833268|ref|ZP_18257996.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|424930893|ref|ZP_18349265.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|425084062|ref|ZP_18487159.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|425094091|ref|ZP_18497174.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|428151187|ref|ZP_18998930.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|428934219|ref|ZP_19007747.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae JHCK1]
gi|428939135|ref|ZP_19012250.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae VA360]
gi|238544734|dbj|BAH61085.1| ATP-dependent DNA helicase [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|339764568|gb|AEK00789.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae KCTC 2242]
gi|363648000|gb|EHL87187.1| ATP-dependent DNA helicase recQ [Klebsiella sp. 4_1_44FAA]
gi|364515733|gb|AEW58861.1| ATP-dependent DNA helicase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|397341372|gb|EJJ34552.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397342014|gb|EJJ35183.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397344702|gb|EJJ37833.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397358598|gb|EJJ51314.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397359601|gb|EJJ52294.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397363627|gb|EJJ56265.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397374431|gb|EJJ66767.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397378264|gb|EJJ70477.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397385030|gb|EJJ77135.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397392581|gb|EJJ84369.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397394580|gb|EJJ86306.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397403296|gb|EJJ94873.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397409845|gb|EJK01145.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397410215|gb|EJK01502.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397420262|gb|EJK11348.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397427007|gb|EJK17798.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397429873|gb|EJK20579.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397437837|gb|EJK28380.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397443829|gb|EJK34130.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397449321|gb|EJK39461.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|402543905|gb|AFQ68054.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|405597672|gb|EKB70935.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|405610253|gb|EKB83062.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|407805080|gb|EKF76331.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|410117240|emb|CCM81330.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410120477|emb|CCM89416.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|414710718|emb|CCN32422.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426303386|gb|EKV65559.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae JHCK1]
gi|426304490|gb|EKV66633.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae VA360]
gi|427538860|emb|CCM95068.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
Length = 608
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q I AL +D +++MPT S + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQETIIETALEGRDCLVVMPTGGGKSLCYQVPALVMGGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T +++++ S ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQQEVMAGCRSGQVRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L LA +A+DE HC S WGHDFRP+Y L L+ P +P + LTA
Sbjct: 128 LD-NFLEHLANWN----LAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPQIPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRYMLMEKFKP------LDQLMRYVQDQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE++V ++A
Sbjct: 236 GKSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENDVRAEVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|227540043|ref|ZP_03970092.1| ATP-dependent helicase RecQ [Sphingobacterium spiritivorum ATCC
33300]
gi|227240118|gb|EEI90133.1| ATP-dependent helicase RecQ [Sphingobacterium spiritivorum ATCC
33300]
Length = 729
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 110/324 (33%), Positives = 166/324 (51%), Gaps = 45/324 (13%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSDRVRSVLKSKFN 64
L+ F F+ +Q A I L KKD +IMPT S V+
Sbjct: 11 LQDFFGFDTFKGDQEAIITNVLNKKDTFVIMPTGGGKSICYQLPALMSQGTAIVISPLIA 70
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKK--KICLMTESSSLKLLYVSPEKLAKS 122
L + +QL A D+I L K + K+ KLLYV+PE L+K
Sbjct: 71 LMKNQVDQLRAFG----GTDSIAHFLNSSLNKGEITKVKQDVTQGKTKLLYVAPESLSKE 126
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLTAT 181
++ + + ++ +A+DE HC S WGHDFRP+Y+ + ++ + ++PI+ LTAT
Sbjct: 127 ENI-----EFLRHITVSFVAVDEAHCISEWGHDFRPEYRKIRQVINGIGENIPIIALTAT 181
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQS 241
AT KV D++K LQ+ D + K+ FNR NL+YEVR K K+ + E+ + + ++
Sbjct: 182 ATPKVQSDIRKNLQMTDATLFKSSFNRTNLYYEVRTK----KNVVKEIVRFI-KNNSGKT 236
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGL 283
GI+Y S K+ E++ E L G++ YHA L++ +IAFG+
Sbjct: 237 GIVYCLSRKKVEEIAEVLNINGIKALPYHAGLDAKTRADTQDKFLMEDVEVIVATIAFGM 296
Query: 284 GIDKPNVRFVIHHCLSKSMENFYQ 307
GIDKP+VR+VIHH + KSME +YQ
Sbjct: 297 GIDKPDVRYVIHHDIPKSMEGYYQ 320
>gi|389842669|ref|YP_006344753.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii ES15]
gi|387853145|gb|AFK01243.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii ES15]
Length = 609
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 168/333 (50%), Gaps = 47/333 (14%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
Y + VL+ F FRP Q I+ L +D +++MPT Y V++
Sbjct: 7 YSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKTG 66
Query: 58 ---VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYV 114
V+ +L + +QL A +A A + T +++ + + ++LLY+
Sbjct: 67 LTIVVSPLISLMKDQVDQLLANGVA-----AACLNSTQSREEQQAVLAGCRTGQVRLLYI 121
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PE+L M LA +A+DE HC S WGHDFRP+Y L L+ FP VP
Sbjct: 122 APERL-----MMDNFIDTLGYWDLAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVP 176
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADL 232
+ LTATA D+ ++L ++D ++ + F+RPN+ Y + + KP LD+L
Sbjct: 177 FMALTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKP------LDQLMRY 230
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------- 277
+ + R +SGIIY S + ED L++RG+ +AYHA LE V
Sbjct: 231 VQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQI 289
Query: 278 ---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 290 VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|425078981|ref|ZP_18482083.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425084628|ref|ZP_18487721.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405589261|gb|EKB62831.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405608866|gb|EKB81789.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
Length = 608
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q I AL +D +++MPT S + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQETIIETALEGRDCLVVMPTGGGKSLCYQVPALVMGGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T +++++ S ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQQEVMAGCRSGQVRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L LA +A+DE HC S WGHDFRP+Y L L+ P +P + LTA
Sbjct: 128 LD-NFLEHLANWN----LAMLAVDEAHCISQWGHDFRPEYAALGQLRQRIPQIPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRYMLMEKFKP------LDQLMRYVQDQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE++V ++A
Sbjct: 236 GKSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENDVRAEVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|315223920|ref|ZP_07865765.1| ATP-dependent helicase RecQ [Capnocytophaga ochracea F0287]
gi|314946092|gb|EFS98096.1| ATP-dependent helicase RecQ [Capnocytophaga ochracea F0287]
Length = 729
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 119/334 (35%), Positives = 175/334 (52%), Gaps = 52/334 (15%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSV 58
D + S LK F F+ +Q I + K++ +IMPT S + V
Sbjct: 6 DDLHSALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAIV 65
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS--LKLLYVSP 116
+ L NQ+ A+ + D+I + L K + +M + S+ KLLYV+P
Sbjct: 66 ISP---LIALMKNQVDAMR-GISSTDSIAHVLNSSLTKNEIREVMEDISAGKTKLLYVAP 121
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPI 175
E L K + K ++ +A+DE HC S WGHDFRP+Y+ + +I++ + ++PI
Sbjct: 122 ESLIKEE-----YANFLKTVPISFVAVDEAHCISEWGHDFRPEYRNIRTIIERLGSNIPI 176
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATAT KV D+ K L +++ V K+ FNRPNL+YEVR K +D AD++
Sbjct: 177 VALTATATPKVQEDILKNLGMQEANVFKSSFNRPNLYYEVRPKTK----NVD--ADII-- 228
Query: 236 RFRNQ----SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------------- 277
RF Q SGIIY S K+ EDL + L+ G+ YHA L++
Sbjct: 229 RFVKQNSKKSGIIYCLSRKKVEDLAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVD 288
Query: 278 ----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 289 VVVATIAFGMGIDKPDVRFVIHHDIPKSIESYYQ 322
>gi|156935855|ref|YP_001439771.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii ATCC
BAA-894]
gi|424801979|ref|ZP_18227521.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii 696]
gi|429119492|ref|ZP_19180209.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii 680]
gi|156534109|gb|ABU78935.1| hypothetical protein ESA_03738 [Cronobacter sakazakii ATCC BAA-894]
gi|423237700|emb|CCK09391.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii 696]
gi|426326019|emb|CCK10946.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii 680]
Length = 609
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 168/333 (50%), Gaps = 47/333 (14%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
Y + VL+ F FRP Q I+ L +D +++MPT Y V++
Sbjct: 7 YSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKTG 66
Query: 58 ---VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYV 114
V+ +L + +QL A +A A + T +++ + + ++LLY+
Sbjct: 67 LTIVVSPLISLMKDQVDQLLANGVA-----AACLNSTQSREEQQAVLAGCRTGQVRLLYI 121
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PE+L M LA +A+DE HC S WGHDFRP+Y L L+ FP VP
Sbjct: 122 APERL-----MMDNFIDTLGYWDLAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVP 176
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADL 232
+ LTATA D+ ++L ++D ++ + F+RPN+ Y + + KP LD+L
Sbjct: 177 FMALTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKP------LDQLMRY 230
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------- 277
+ + R +SGIIY S + ED L++RG+ +AYHA LE V
Sbjct: 231 VQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQI 289
Query: 278 ---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 290 VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|149372419|ref|ZP_01891607.1| ATP-dependent DNA helicase recQ [unidentified eubacterium SCB49]
gi|149354809|gb|EDM43372.1| ATP-dependent DNA helicase recQ [unidentified eubacterium SCB49]
Length = 730
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 171/325 (52%), Gaps = 42/325 (12%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DRVRSVLKSKF 63
+ LK F + F+ Q I L +++ +IMPT S + +++ S
Sbjct: 8 AALKQYFGFSKFKGLQEVVIQSILNRENTFVIMPTGGGKSLCYQLPALMNEGTAIVVSP- 66
Query: 64 NLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKK--KKICLMTESSSLKLLYVSPEKLAK 121
L NQ+ A+ A+ + I + L K K++ ES KLLYV+PE L K
Sbjct: 67 -LIALMKNQVDALR-AISSDEGIAHVLNSSLNKTEVKQVKSDIESGITKLLYVAPESLTK 124
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLTA 180
+ ++ LQ ++ +AIDE HC S WGHDFRP+Y+ L SI++ + ++PI+GLTA
Sbjct: 125 DE-YVDFLQNQ----TISFLAIDEAHCISEWGHDFRPEYRNLKSIIERIGENIPIIGLTA 179
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TAT KV D+ K L + KA FNRPNL+YEVR K +D ++ +
Sbjct: 180 TATEKVQEDILKNLAMTSANTFKASFNRPNLYYEVRSKTK----NIDSDITRFVKQNEGK 235
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282
SGIIY S K E+L + L+ G++ YHA L++ +IAFG
Sbjct: 236 SGIIYCLSRKRVEELAQILQVNGIKAVPYHAGLDAKTRVRHQDMFLMEECDVVVATIAFG 295
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GIDKP+VRFVIH+ + KS+E++YQ
Sbjct: 296 MGIDKPDVRFVIHNDMPKSIESYYQ 320
>gi|419765474|ref|ZP_14291711.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|397741738|gb|EJK88959.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
Length = 608
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q I AL +D +++MPT S + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQETIIETALEGRDCLVVMPTGGGKSLCYQVPALVMGGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T +++++ S ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQQEVMAGCRSGQVRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L LA +A+DE HC S WGHDFRP+Y L L+ P +P + LTA
Sbjct: 128 LD-NFLEHLANWN----LAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPQIPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRYMLMEKFKP------LDQLMRYVQDQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE++V ++A
Sbjct: 236 GKSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENDVRAEVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|354604692|ref|ZP_09022681.1| ATP-dependent DNA helicase RecQ [Alistipes indistinctus YIT 12060]
gi|353347271|gb|EHB91547.1| ATP-dependent DNA helicase RecQ [Alistipes indistinctus YIT 12060]
Length = 730
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/325 (35%), Positives = 165/325 (50%), Gaps = 48/325 (14%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFN 64
LK F T F+ NQ I L KD ++MPT S D V ++
Sbjct: 13 LKEYFGFTSFKGNQEEVIRNVLAGKDTFVLMPTGGGKSLCYQLPALVMDGVAIIISP--- 69
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE--SSSLKLLYVSPEKLAKS 122
L NQ+ A+ ++ D I L K + ++ + KLLY +PE L K
Sbjct: 70 LIALMKNQVDAMRTFSME-DGIAHFLNSSLNKAAVAKVKSDVLAGKTKLLYFAPESLTKE 128
Query: 123 K--SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
SF+ +++ ++ AIDE HC S WGHDFRP+Y+ + + P++ LTA
Sbjct: 129 DNVSFLRQIK-------ISFYAIDEAHCISEWGHDFRPEYRRIRPIINDIGAAPLIALTA 181
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TAT KV +D+QK L + D V K+ FNRPNLFYEVR K A K+ + + + +
Sbjct: 182 TATPKVQMDIQKNLGMLDAAVFKSSFNRPNLFYEVRSKTNATKEIIRYI-----KSNPGK 236
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282
SGIIY S K+ E+L E L ++V+ YHA +++ +IAFG
Sbjct: 237 SGIIYCLSRKKVEELAELLAANSIKVAPYHAGMDAVTRAANQDAFLNEKVDVIVATIAFG 296
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GIDKP+VR+VIH+ + KS+E +YQ
Sbjct: 297 MGIDKPDVRYVIHYDIPKSLEGYYQ 321
>gi|417792738|ref|ZP_12440060.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii E899]
gi|429117792|ref|ZP_19178710.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii 701]
gi|449309964|ref|YP_007442320.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii SP291]
gi|333953169|gb|EGL71149.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii E899]
gi|426320921|emb|CCK04823.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii 701]
gi|449099997|gb|AGE88031.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii SP291]
Length = 609
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 168/333 (50%), Gaps = 47/333 (14%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
Y + VL+ F FRP Q I+ L +D +++MPT Y V++
Sbjct: 7 YSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKTG 66
Query: 58 ---VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYV 114
V+ +L + +QL A +A A + T +++ + + ++LLY+
Sbjct: 67 LTIVVSPLISLMKDQVDQLLANGVA-----AACLNSTQSREEQQAVMAGCRTGQVRLLYI 121
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PE+L M LA +A+DE HC S WGHDFRP+Y L L+ FP VP
Sbjct: 122 APERL-----MMDNFIDTLGYWDLAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVP 176
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADL 232
+ LTATA D+ ++L ++D ++ + F+RPN+ Y + + KP LD+L
Sbjct: 177 FMALTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKP------LDQLMRY 230
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------- 277
+ + R +SGIIY S + ED L++RG+ +AYHA LE V
Sbjct: 231 VQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQI 289
Query: 278 ---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 290 VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|445499562|ref|ZP_21466417.1| ATP-dependent DNA helicase recQ [Janthinobacterium sp. HH01]
gi|444789557|gb|ELX11105.1| ATP-dependent DNA helicase recQ [Janthinobacterium sp. HH01]
Length = 607
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 106/328 (32%), Positives = 161/328 (49%), Gaps = 42/328 (12%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRS 57
++R +L++ F FR Q + DA+++MPT S D V
Sbjct: 7 NERALQLLQTVFGYPAFRGQQAEIVGHVSGGGDALVLMPTGGGKSLCYQIPALVRDGVGV 66
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPE 117
V+ L + + LA + + A + T + +I + + + L+YV+PE
Sbjct: 67 VVSPLIALMQDQVDALAEVGVR-----AAFLNSTQTYEEASRIERLVRTGEIDLVYVAPE 121
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
+L + +++A +A AIDE HC S WGHDFRP+Y LS+L FPDVP +
Sbjct: 122 RLMTERCL-----NLFQASKIALFAIDEAHCVSQWGHDFRPEYIKLSVLHEQFPDVPRIA 176
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATA + ++ LQ+ D + + F+RPN+ Y++ K +K +L D ++
Sbjct: 177 LTATADPQTRAEIIHRLQLGDAMQFVSSFDRPNIRYQIVEKANGRK----QLLDFITTEH 232
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL--------------ESNV----SI 279
GI+Y S K+ E+ E L G+R AYHA + E N+ +I
Sbjct: 233 GGDCGIVYCLSRKKVEETAEFLNENGVRAMAYHAGMDHAKRAANQAKFLREENIVMCATI 292
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
AFG+GIDKPNVRFV H L KS+E +YQ
Sbjct: 293 AFGMGIDKPNVRFVCHLDLPKSIEGYYQ 320
>gi|161505534|ref|YP_001572646.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:- str. RSK2980]
gi|160866881|gb|ABX23504.1| hypothetical protein SARI_03699 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 615
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 170/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 19 AKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVS 78
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 79 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMTGCRTGQIRLLYIAPERLM 133
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 134 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 188
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA LD+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 189 TADDTTRLDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 241
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ + ++A
Sbjct: 242 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVA 301
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 302 FGMGINKPNVRFVVHFDIPRNIESYYQ 328
>gi|197247389|ref|YP_002148883.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|198243255|ref|YP_002217887.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|205354483|ref|YP_002228284.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207859158|ref|YP_002245809.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|238912961|ref|ZP_04656798.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|375121408|ref|ZP_09766575.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|375125367|ref|ZP_09770531.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|197211092|gb|ACH48489.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197937771|gb|ACH75104.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|205274264|emb|CAR39283.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|206710961|emb|CAR35329.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|326625675|gb|EGE32020.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|326629617|gb|EGE35960.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
Length = 615
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 170/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 19 AKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVS 78
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 79 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLM 133
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 134 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 188
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA LD+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 189 TADDTTRLDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 241
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ + ++A
Sbjct: 242 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVA 301
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 302 FGMGINKPNVRFVVHFDIPRNIESYYQ 328
>gi|421617431|ref|ZP_16058420.1| ATP-dependent DNA helicase RecQ [Pseudomonas stutzeri KOS6]
gi|409780586|gb|EKN60213.1| ATP-dependent DNA helicase RecQ [Pseudomonas stutzeri KOS6]
Length = 707
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 110/326 (33%), Positives = 168/326 (51%), Gaps = 41/326 (12%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-- 64
D+ + +LK F FR NQ A I DA+++MPT S +V ++L+
Sbjct: 3 DQAQRILKDVFGYDAFRGNQGAIIERVGSGGDALVLMPTGGGKSLCYQVPALLREGLAVV 62
Query: 65 ---LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAK 121
L +Q+A ++ L A+ + T +++ I + +K+LY++PE+L +
Sbjct: 63 VSPLIALMDDQVATLDE--LGVSAVALNSTLSADEQRDIAERIRRNEIKMLYLAPERLVQ 120
Query: 122 SK--SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
+ +F+ +L+ +A AIDE HC S WGHDFRP+Y L L +FP VP + LT
Sbjct: 121 PRMLAFLQRLE-------IALFAIDEAHCVSQWGHDFRPEYMQLGQLAELFPGVPRIALT 173
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATA + ++ + LQ+E+ + F+RPN+FY + K +K L LA+ R
Sbjct: 174 ATADKRTREEIVQRLQLENAERFLSSFDRPNIFYRIVPKEQPRKQLLGFLAER-----RG 228
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 281
+GI+Y S K+ +DL L +G YHA L S++ +IAF
Sbjct: 229 DAGIVYCMSRKKVDDLAAFLTEQGFPALPYHAGLPSDLRAYHQKRFLNEEGLIMVATIAF 288
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GIDKPNVRFV H L KS+E +YQ
Sbjct: 289 GMGIDKPNVRFVAHLDLPKSLEAYYQ 314
>gi|378957075|ref|YP_005214562.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|357207686|gb|AET55732.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
Length = 615
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/326 (32%), Positives = 170/326 (52%), Gaps = 47/326 (14%)
Query: 12 RSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKS 61
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 20 KQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSP 79
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAK 121
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 80 LISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLML 134
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTAT
Sbjct: 135 D-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTAT 189
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRN 239
A LD+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 190 ADDTTRLDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-RG 242
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 281
+SGIIY S + ED L++RG+ +AYHA LE+ + ++AF
Sbjct: 243 KSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAF 302
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GI+KPNVRFV+H + +++E++YQ
Sbjct: 303 GMGINKPNVRFVVHFDIPRNIESYYQ 328
>gi|351732072|ref|ZP_08949763.1| ATP-dependent DNA helicase RecQ [Acidovorax radicis N35]
Length = 631
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/324 (32%), Positives = 161/324 (49%), Gaps = 36/324 (11%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS-----------DRVRSVLKS 61
+VL F FR Q + + DA+++MPT S + R V
Sbjct: 18 TVLHDVFGYEQFRGPQQDIVEHVIGGSDALVLMPTGGGKSLCYQVPAIVRQQQGRGVTIV 77
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAK 121
L +Q+ A++ A + DA + T + + + L ++ + LLY +PE+L
Sbjct: 78 ISPLIALMHDQVGALHEAGV--DAAFLNSTLSFDEAQDVELRLQTGDITLLYAAPERL-N 134
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
+ F+ L +Y+ G L+ AIDE HC S WGHDFRP+Y+ L++L + VP + LTAT
Sbjct: 135 TPRFLGLLDSLYQGGHLSLFAIDEAHCVSQWGHDFRPEYRALTVLHERYSGVPRIALTAT 194
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQS 241
A D+ + LQ+ED + + F+RPN+ Y + K KD +L + R ++
Sbjct: 195 ADDLTRADIIERLQLEDARLFISSFDRPNIRYRIEEK----KDVTTQLLRFIEREHVGEA 250
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGL 283
G++Y S K E+L L + GL YHA L++ V +IAFG+
Sbjct: 251 GVVYCQSRKRVEELAATLCDAGLTALPYHAGLDTKVRQKNQDRFLREEGIVMVATIAFGM 310
Query: 284 GIDKPNVRFVIHHCLSKSMENFYQ 307
GIDKP+VRFV H + K++E +YQ
Sbjct: 311 GIDKPDVRFVAHVDMPKNIEGYYQ 334
>gi|410624460|ref|ZP_11335257.1| ATP-dependent DNA helicase RecQ [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410155967|dbj|GAC30631.1| ATP-dependent DNA helicase RecQ [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 627
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 168/322 (52%), Gaps = 43/322 (13%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKF 63
+LK F +FR Q+ I+ L +DA+I++PT S + + V+
Sbjct: 38 ILKDTFGYAEFRAGQMEVIDKILNGQDALILLPTGGGKSLCYQVPALALEGITIVVSPLI 97
Query: 64 NLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSK 123
+L + QL A + A + + + ++I L LLYV+PE+L KS
Sbjct: 98 SLMQDQVQQLTAQGVK-----AAYLNSSQDAEESQQITEQLFRGELDLLYVAPERLLKS- 151
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
F+ LQ++ ++ IA+DE HC S WGHDFR DY+ L LK+ F +VP + LTATA
Sbjct: 152 YFLNSLQRVK----VSLIAVDEAHCVSHWGHDFRQDYRQLGRLKSQFQNVPFIALTATAD 207
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
+D+Q LQ+E+ V K F+RPN+ Y + A+ D++ + ++ +GI
Sbjct: 208 HATQVDIQHQLQLENPFVFKGGFDRPNIRYNL----LAKYKGFDQVVAFVKQQ-DGAAGI 262
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGI 285
+Y S + +DL + L++ G++ AYHA ++ ++AFG+GI
Sbjct: 263 VYCNSRAKVDDLTQRLQSAGIKCDAYHAGRDTATREFVQTQFLKDDLQVVIATVAFGMGI 322
Query: 286 DKPNVRFVIHHCLSKSMENFYQ 307
+K NVRFV+HH + +S+E++YQ
Sbjct: 323 NKSNVRFVVHHDVPRSVESYYQ 344
>gi|429089133|ref|ZP_19151865.1| ATP-dependent DNA helicase RecQ [Cronobacter universalis NCTC 9529]
gi|426508936|emb|CCK16977.1| ATP-dependent DNA helicase RecQ [Cronobacter universalis NCTC 9529]
Length = 609
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 168/333 (50%), Gaps = 47/333 (14%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
Y + VL+ F FRP Q I+ L +D +++MPT Y V++
Sbjct: 7 YSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKTG 66
Query: 58 ---VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYV 114
V+ +L + +QL A +A A + T +++ + + ++LLY+
Sbjct: 67 LTIVVSPLISLMKDQVDQLLANGVA-----AACLNSTQSRDEQQAVLAGCRTGEVRLLYI 121
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PE+L M LA +A+DE HC S WGHDFRP+Y L L+ FP VP
Sbjct: 122 APERL-----MMDNFIDTLGYWDLAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVP 176
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADL 232
+ LTATA D+ ++L ++D ++ + F+RPN+ Y + + KP LD+L
Sbjct: 177 FIALTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKP------LDQLMRY 230
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------- 277
+ + R +SGIIY S + ED L++RG+ +AYHA LE V
Sbjct: 231 VQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQI 289
Query: 278 ---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 290 VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|260221542|emb|CBA30210.1| ATP-dependent DNA helicase recQ [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 615
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 164/323 (50%), Gaps = 36/323 (11%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--------DYPWSDRVRSVLKSKF-- 63
+L F FR Q A + + DA+++MPT P R ++ L +
Sbjct: 6 ILHDVFGYQAFRGPQQAIVEHVIAGGDALVLMPTGGGKSLCYQVPAIARQQAGLGATLVI 65
Query: 64 -NLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
L +Q+ A++ A + A + T + +I + LLY +PE+++ +
Sbjct: 66 SPLIALMHDQVGALHEAGVS--AAFLNSTLTSDEAYQIEQQLLRGEITLLYAAPERVSNA 123
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+ F+ L +++ G L+ AIDE HC S WGHDFRPDY+ L++L +P VP + LTATA
Sbjct: 124 R-FLALLDSLFERGKLSLFAIDEAHCVSQWGHDFRPDYRNLTVLHERYPGVPRIALTATA 182
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSG 242
D+ + LQ+E+ + F+RPN+ Y + +KD +L + R ++G
Sbjct: 183 DDLTRADILERLQLEEARAFVSSFDRPNIRYTI----VEKKDSTTQLLRFIEREHEGEAG 238
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 284
I+Y S K+ ED+ + L + G++ YHA L+S V +IAFG+G
Sbjct: 239 IVYCQSRKKVEDMAQTLVDAGIKALPYHAGLDSKVRQLNQDRFLREEGIVMVATIAFGMG 298
Query: 285 IDKPNVRFVIHHCLSKSMENFYQ 307
IDKP+VRFV H + K++E +YQ
Sbjct: 299 IDKPDVRFVAHRDMPKNIEGYYQ 321
>gi|438141963|ref|ZP_20875172.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|434939609|gb|ELL46400.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
Length = 609
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 170/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 128 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA LD+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRLDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ + ++A
Sbjct: 236 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|375258339|ref|YP_005017509.1| ATP-dependent DNA helicase RecQ [Klebsiella oxytoca KCTC 1686]
gi|402839822|ref|ZP_10888300.1| ATP-dependent DNA helicase RecQ [Klebsiella sp. OBRC7]
gi|423105828|ref|ZP_17093529.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5242]
gi|365907817|gb|AEX03270.1| ATP-dependent DNA helicase RecQ [Klebsiella oxytoca KCTC 1686]
gi|376379689|gb|EHS92440.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5242]
gi|402287439|gb|EJU35887.1| ATP-dependent DNA helicase RecQ [Klebsiella sp. OBRC7]
Length = 608
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 170/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q I+ AL +D +++MPT S + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQETIIDTALAGRDCLVVMPTGGGKSLCYQVPALVLGGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T +++++ S ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQQEVMAGCRSGQIRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L L+ +A+DE HC S WGHDFRP+Y L L+ P +P + LTA
Sbjct: 128 LD-NFLEHLTHWN----LSMVAVDEAHCISQWGHDFRPEYAALGQLRQRIPQIPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRRDIVRLLDLNDPLIQVSSFDRPNIRYMLMEKFKP------LDQLMRYVQDQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+++ ++A
Sbjct: 236 GKSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENHIRADVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|423722012|ref|ZP_17696188.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae CL09T00C40]
gi|409242714|gb|EKN35474.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae CL09T00C40]
Length = 609
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 171/329 (51%), Gaps = 53/329 (16%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTD-FRPN 71
S+LK F T FRP Q I L K+D++++MPT +S+ F L + P
Sbjct: 6 SLLKRFFGYTSFRPLQAEIIQRTLQKEDSLVLMPTGGG-----KSIC---FQLPAIYMPG 57
Query: 72 QLAAIN--IALLKK--DAII-----------IMPTGKLLKKKKICLMTESSSLKLLYVSP 116
++ IAL+K + +I +MP + + +++C+ +KLLY+SP
Sbjct: 58 TAIVVSPLIALMKDQVEGLIANGIPAATLNSMMPEEERHRVRQLCI---QGKVKLLYISP 114
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
E +++L + ++ IAIDE HC S WGHDFRP+Y LS+LK FP VPI+
Sbjct: 115 E------GIISELHWLLPRIDISLIAIDEAHCISHWGHDFRPEYTQLSVLKENFPKVPII 168
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATA D+ L++ D + F+RPNL +R + ++K+ + + ++R
Sbjct: 169 ALTATADKITRTDILNQLKLRDPKTFISSFDRPNLSLTIR-RGLSKKEKIAAIVHFINRH 227
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
R QSGIIY S E L EEL +R AYHA L S+ +
Sbjct: 228 HR-QSGIIYCMSRNSTESLVEELSEYSIRAVAYHAGLSSDKREKAQDDFINDRVNVVCAT 286
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+AFG+GIDK NVR+VIH+ + S+EN+YQ
Sbjct: 287 VAFGMGIDKSNVRWVIHYNMPASIENYYQ 315
>gi|419956215|ref|ZP_14472323.1| ATP-dependent DNA helicase RecQ [Pseudomonas stutzeri TS44]
gi|387966982|gb|EIK51299.1| ATP-dependent DNA helicase RecQ [Pseudomonas stutzeri TS44]
Length = 708
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 110/329 (33%), Positives = 164/329 (49%), Gaps = 47/329 (14%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSV 58
D+ + +LK F FR NQ A I DA+++MPT S D + V
Sbjct: 3 DQAQRILKDVFGYDAFRGNQGAIIEQVAAGGDALVLMPTGGGKSLCYQVPALLRDGLAVV 62
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEK 118
+ L D + L + +A A+ + T +++ I + +KLLY++PE+
Sbjct: 63 VSPLIALMDDQVATLDELGVA-----AVALNSTLSADEQRDIAERIRRNEIKLLYLAPER 117
Query: 119 LAKSK--SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
L + + +F+ +LQ +A AIDE HC S WGHDFRP+Y L L +FP VP +
Sbjct: 118 LVQPRMLAFLQRLQ-------IALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPGVPRI 170
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATA + ++ + LQ+++ + F+RPN+FY + K +K L LA+
Sbjct: 171 ALTATADMRTREEIIQRLQLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLGFLAER---- 226
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------S 278
R +GI+Y S K+ +DL L +G YHA L + + +
Sbjct: 227 -RGDAGIVYCMSRKKVDDLAAFLTEQGFPALPYHAGLPNELRAYHQKRFLNEEGLIMVAT 285
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
IAFG+GIDKPNVRFV H L KS+E +YQ
Sbjct: 286 IAFGMGIDKPNVRFVAHLDLPKSLEAYYQ 314
>gi|421359294|ref|ZP_15809589.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|421361216|ref|ZP_15811481.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|421369214|ref|ZP_15819397.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|421370097|ref|ZP_15820268.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|421375163|ref|ZP_15825277.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|421381841|ref|ZP_15831895.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|421383689|ref|ZP_15833723.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|421388254|ref|ZP_15838246.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|421395342|ref|ZP_15845279.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|421399721|ref|ZP_15849615.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|421401736|ref|ZP_15851603.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|421408846|ref|ZP_15858644.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|421410862|ref|ZP_15860634.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|421417923|ref|ZP_15867631.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|421420145|ref|ZP_15869824.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|421424283|ref|ZP_15873927.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|421428799|ref|ZP_15878402.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|421436041|ref|ZP_15885575.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|421438465|ref|ZP_15887961.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|421442493|ref|ZP_15891943.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|421447151|ref|ZP_15896554.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|423142444|ref|ZP_17130082.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|436590140|ref|ZP_20511973.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|436773695|ref|ZP_20520937.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|436801171|ref|ZP_20524764.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|436806449|ref|ZP_20526657.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436813890|ref|ZP_20532071.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436846021|ref|ZP_20539079.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436847880|ref|ZP_20539851.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436859968|ref|ZP_20547789.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436867019|ref|ZP_20552419.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436868646|ref|ZP_20553305.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436876222|ref|ZP_20557703.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436890157|ref|ZP_20565743.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436898410|ref|ZP_20570408.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436901964|ref|ZP_20572847.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436908529|ref|ZP_20575758.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436917083|ref|ZP_20580671.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436922688|ref|ZP_20584694.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436937839|ref|ZP_20592942.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436940075|ref|ZP_20594112.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436948403|ref|ZP_20598638.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436958486|ref|ZP_20603161.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436967336|ref|ZP_20607279.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436980997|ref|ZP_20613386.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|437000083|ref|ZP_20620555.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437008856|ref|ZP_20623591.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437014194|ref|ZP_20625395.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437026436|ref|ZP_20629799.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437037336|ref|ZP_20634192.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437053403|ref|ZP_20642484.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437061353|ref|ZP_20646907.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437063066|ref|ZP_20647795.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437071962|ref|ZP_20652217.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437083523|ref|ZP_20659197.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437092191|ref|ZP_20663717.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|437098966|ref|ZP_20665653.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|437119083|ref|ZP_20670704.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|437131539|ref|ZP_20677442.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|437139344|ref|ZP_20681754.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|437142342|ref|ZP_20683688.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|437149724|ref|ZP_20688293.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|437158406|ref|ZP_20693315.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|437165051|ref|ZP_20697379.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|437173698|ref|ZP_20701890.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|437184963|ref|ZP_20708690.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|437234431|ref|ZP_20713723.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|437257290|ref|ZP_20715882.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|437265075|ref|ZP_20720272.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|437273609|ref|ZP_20724778.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|437284293|ref|ZP_20729497.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|437318852|ref|ZP_20738133.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|437320960|ref|ZP_20738439.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|437342283|ref|ZP_20745299.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|437395546|ref|ZP_20751328.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|437419348|ref|ZP_20754380.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|437439041|ref|ZP_20757093.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|437463867|ref|ZP_20763421.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|437472396|ref|ZP_20765495.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|437487635|ref|ZP_20769971.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|437512325|ref|ZP_20777246.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|437529101|ref|ZP_20780305.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|437557237|ref|ZP_20785110.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|437569652|ref|ZP_20787960.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|437582271|ref|ZP_20792322.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|437599758|ref|ZP_20797007.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|437620810|ref|ZP_20804300.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|437630225|ref|ZP_20806226.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|437656115|ref|ZP_20810623.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|437674556|ref|ZP_20816555.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|437689555|ref|ZP_20820139.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|437703289|ref|ZP_20824415.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|437727903|ref|ZP_20830344.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|437778162|ref|ZP_20836273.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|437809292|ref|ZP_20840588.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|437899536|ref|ZP_20849750.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 6.0562-1]
gi|438058078|ref|ZP_20856562.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|438088905|ref|ZP_20860120.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|438102051|ref|ZP_20864758.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|438107411|ref|ZP_20866718.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|440762769|ref|ZP_20941820.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|440766569|ref|ZP_20945558.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|440771658|ref|ZP_20950571.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|445130940|ref|ZP_21381550.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|445141894|ref|ZP_21385681.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|445150436|ref|ZP_21389723.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|445174893|ref|ZP_21397165.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|445204757|ref|ZP_21401335.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|445230566|ref|ZP_21405428.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|445303745|ref|ZP_21411560.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|445328683|ref|ZP_21413170.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|445345133|ref|ZP_21418007.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|445358858|ref|ZP_21422890.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|379050373|gb|EHY68266.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|395982718|gb|EJH91917.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|395985586|gb|EJH94755.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|395993696|gb|EJI02788.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|395999768|gb|EJI08784.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|396005742|gb|EJI14716.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|396007658|gb|EJI16603.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|396012742|gb|EJI21637.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|396020771|gb|EJI29610.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|396021181|gb|EJI30008.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|396026583|gb|EJI35349.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|396026668|gb|EJI35433.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|396034171|gb|EJI42873.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|396039462|gb|EJI48088.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|396045947|gb|EJI54537.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|396047582|gb|EJI56154.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|396055399|gb|EJI63885.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|396060547|gb|EJI68990.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|396060632|gb|EJI69074.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|396072908|gb|EJI81215.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|396073411|gb|EJI81713.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|396075234|gb|EJI83509.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|434958340|gb|ELL51900.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|434961813|gb|ELL55066.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|434969388|gb|ELL62095.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434974710|gb|ELL67042.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434978162|gb|ELL70220.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434980142|gb|ELL72071.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434987107|gb|ELL78757.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434991131|gb|ELL82651.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434993686|gb|ELL85085.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|435003891|gb|ELL94890.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|435006652|gb|ELL97528.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435010977|gb|ELM01723.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435013508|gb|ELM04143.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435020275|gb|ELM10688.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435030324|gb|ELM20355.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435031946|gb|ELM21892.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435034925|gb|ELM24781.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435043992|gb|ELM33691.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435046917|gb|ELM36526.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435055947|gb|ELM45352.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435056032|gb|ELM45436.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435059378|gb|ELM48656.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435061695|gb|ELM50916.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435067089|gb|ELM56159.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435067431|gb|ELM56472.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435085682|gb|ELM74230.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435086732|gb|ELM75262.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435088035|gb|ELM76493.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435089334|gb|ELM77771.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435089411|gb|ELM77847.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435103456|gb|ELM91546.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435108066|gb|ELM96043.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435110863|gb|ELM98770.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435112004|gb|ELM99887.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|435124000|gb|ELN11483.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|435126022|gb|ELN13434.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|435130597|gb|ELN17826.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|435131711|gb|ELN18918.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|435142463|gb|ELN29364.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|435147536|gb|ELN34299.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|435151498|gb|ELN38139.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|435154464|gb|ELN41044.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|435158385|gb|ELN44787.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|435160339|gb|ELN46619.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|435167446|gb|ELN53370.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|435177494|gb|ELN62817.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|435177804|gb|ELN63075.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|435178514|gb|ELN63722.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|435185584|gb|ELN70443.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|435192097|gb|ELN76651.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|435193062|gb|ELN77563.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|435196876|gb|ELN81195.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|435198704|gb|ELN82860.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|435201681|gb|ELN85570.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|435212790|gb|ELN95748.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|435217896|gb|ELO00304.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|435226055|gb|ELO07650.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|435230671|gb|ELO11962.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|435232525|gb|ELO13620.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|435241056|gb|ELO21444.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|435245892|gb|ELO25920.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|435250142|gb|ELO29884.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|435256685|gb|ELO35980.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|435263151|gb|ELO42218.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|435264044|gb|ELO43066.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|435272436|gb|ELO50837.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|435278119|gb|ELO55991.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|435282011|gb|ELO59650.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|435284000|gb|ELO61512.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|435291040|gb|ELO67927.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|435293720|gb|ELO70384.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435299379|gb|ELO75529.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|435303382|gb|ELO79270.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|435314209|gb|ELO87664.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|435317076|gb|ELO90139.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|435321829|gb|ELO94188.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 6.0562-1]
gi|435323956|gb|ELO95934.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|435333513|gb|ELP04315.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|436420777|gb|ELP18634.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|436421917|gb|ELP19757.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|436422492|gb|ELP20328.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|444850160|gb|ELX75264.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|444851274|gb|ELX76366.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|444856864|gb|ELX81883.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|444858827|gb|ELX83800.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|444861272|gb|ELX86157.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|444864271|gb|ELX89075.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|444878165|gb|ELY02289.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|444879443|gb|ELY03543.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|444879737|gb|ELY03830.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|444885738|gb|ELY09515.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
Length = 609
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 170/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 128 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA LD+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRLDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ + ++A
Sbjct: 236 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|429102817|ref|ZP_19164791.1| ATP-dependent DNA helicase RecQ [Cronobacter turicensis 564]
gi|426289466|emb|CCJ90904.1| ATP-dependent DNA helicase RecQ [Cronobacter turicensis 564]
Length = 609
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 168/333 (50%), Gaps = 47/333 (14%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
Y + VL+ F FRP Q I+ L +D +++MPT Y V++
Sbjct: 7 YSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKTG 66
Query: 58 ---VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYV 114
V+ +L + +QL A +A A + T +++ + + ++LLY+
Sbjct: 67 LTIVVSPLISLMKDQVDQLLANGVA-----AACLNSTQSRDEQQAVMAGCRTGEVRLLYI 121
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PE+L M LA +A+DE HC S WGHDFRP+Y L L+ FP VP
Sbjct: 122 APERL-----MMDNFIDTLGYWDLAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVP 176
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADL 232
+ LTATA D+ ++L ++D ++ + F+RPN+ Y + + KP LD+L
Sbjct: 177 FIALTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKP------LDQLMRY 230
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------- 277
+ + R +SGIIY S + ED L++RG+ +AYHA LE V
Sbjct: 231 VQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQI 289
Query: 278 ---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 290 VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|423345823|ref|ZP_17323512.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae CL03T12C32]
gi|409221558|gb|EKN14507.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae CL03T12C32]
Length = 609
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 171/329 (51%), Gaps = 53/329 (16%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTD-FRPN 71
S+LK F T FRP Q I L K+D++++MPT +S+ F L + P
Sbjct: 6 SLLKRFFGYTSFRPLQAEIIQRTLQKEDSLVLMPTGGG-----KSIC---FQLPAIYMPG 57
Query: 72 QLAAIN--IALLKK--DAII-----------IMPTGKLLKKKKICLMTESSSLKLLYVSP 116
++ IAL+K + +I +MP + + +++C+ +KLLY+SP
Sbjct: 58 TAIVVSPLIALMKDQVEGLIANGIPAATLNSMMPEEERHRVRQLCI---QGKVKLLYISP 114
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
E +++L + ++ IAIDE HC S WGHDFRP+Y LS+LK FP VPI+
Sbjct: 115 E------GIISELHWLLPRIDISLIAIDEAHCISHWGHDFRPEYTQLSVLKENFPKVPII 168
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATA D+ L++ D + F+RPNL +R + ++K+ + + ++R
Sbjct: 169 ALTATADKITRTDILNQLKLRDPKTFISSFDRPNLSLTIR-RGLSKKEKIAAIVHFINRH 227
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
R QSGIIY S E L EEL +R AYHA L S+ +
Sbjct: 228 HR-QSGIIYCMSRNSTESLVEELSEYSIRAVAYHAGLSSDKREKAQDDFINDRVNVVCAT 286
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+AFG+GIDK NVR+VIH+ + S+EN+YQ
Sbjct: 287 VAFGMGIDKSNVRWVIHYNMPASIENYYQ 315
>gi|418513709|ref|ZP_13079934.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|366081267|gb|EHN45216.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
Length = 615
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 170/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 19 AKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVS 78
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 79 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQVRLLYIAPERLM 133
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 134 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 188
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA LD+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 189 TADDTTRLDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 241
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ + ++A
Sbjct: 242 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVA 301
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 302 FGMGINKPNVRFVVHFDIPRNIESYYQ 328
>gi|429107085|ref|ZP_19168954.1| ATP-dependent DNA helicase RecQ [Cronobacter malonaticus 681]
gi|426293808|emb|CCJ95067.1| ATP-dependent DNA helicase RecQ [Cronobacter malonaticus 681]
Length = 609
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 168/333 (50%), Gaps = 47/333 (14%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
Y + VL+ F FRP Q I+ L +D +++MPT Y V++
Sbjct: 7 YSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKTG 66
Query: 58 ---VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYV 114
V+ +L + +QL A +A A + T +++ + + ++LLY+
Sbjct: 67 LTIVVSPLISLMKDQVDQLLANGVA-----AACLNSTQSRDEQQAVMAGCRTGQVRLLYI 121
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PE+L M LA +A+DE HC S WGHDFRP+Y L L+ FP VP
Sbjct: 122 APERL-----MMDNFIDTLGYWDLAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVP 176
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADL 232
+ LTATA D+ ++L ++D ++ + F+RPN+ Y + + KP LD+L
Sbjct: 177 FMALTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKP------LDQLMRY 230
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------- 277
+ + R +SGIIY S + ED L++RG+ +AYHA LE V
Sbjct: 231 VQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQI 289
Query: 278 ---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 290 VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|255579791|ref|XP_002530733.1| DNA helicase, putative [Ricinus communis]
gi|223529697|gb|EEF31639.1| DNA helicase, putative [Ricinus communis]
Length = 718
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 172/337 (51%), Gaps = 41/337 (12%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--------DYPWSDRVRSVLKSKFNL 65
+L+ F +DFR QL AI L +D +MPT P R VL L
Sbjct: 31 LLRWHFGHSDFRGKQLEAIQSVLSGRDCFCLMPTGGGKSMCYQIPALSRPGIVLVVS-PL 89
Query: 66 TDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSF 125
NQ+ A+ + + + T +L K L + S++LLYV+PE +A + F
Sbjct: 90 IALMENQVMALKEKEIAAEFLSSTQTSQLKTKIHEDLDSGKPSIRLLYVTPELIA-TPGF 148
Query: 126 MTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTK 185
M+KL +++ G L IAIDE HC S+WGHDFR Y+ LS L+ +FPDVPIL LTATA K
Sbjct: 149 MSKLTRIHARGLLNLIAIDEAHCISTWGHDFRASYRKLSSLRNLFPDVPILALTATAVPK 208
Query: 186 VMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE-LADLMS--RRFRNQSG 242
V DV + L ++D +++K+ FNR N++YEVR KD LD+ ADL S + +
Sbjct: 209 VQKDVIESLCLQDPLILKSSFNRSNIYYEVRY-----KDLLDDAYADLSSVLKSSGDICA 263
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHA----KLESNV--------------SIAFGLG 284
IIY C+ L L G+ +AYHA KL S+V ++AFG
Sbjct: 264 IIYCLQRTTCDGLAAHLSKNGISCAAYHAGLNNKLRSSVLDDWISSKIQVVVATVAFG-- 321
Query: 285 IDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRS 321
+V+ V H + KSME FYQ S G + RS
Sbjct: 322 ---KDVKLVCHFNIPKSMEAFYQESGRAGRDQLPCRS 355
>gi|238756279|ref|ZP_04617594.1| ATP-dependent DNA helicase recQ [Yersinia ruckeri ATCC 29473]
gi|238705485|gb|EEP97887.1| ATP-dependent DNA helicase recQ [Yersinia ruckeri ATCC 29473]
Length = 609
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 173/327 (52%), Gaps = 51/327 (15%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q IN L +D +++MPT S D + V+
Sbjct: 15 QVLRETFGYQQFRPGQQEIINATLAGQDCLVVMPTGGGKSLCYQIPALVMDGLTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMT--ESSSLKLLYVSPEKLA 120
+L + +QL A +A ++ +++++ +M + +KLLY++PE+L
Sbjct: 75 ISLMKDQVDQLLAYGVAAGCLNS-------SQTREQQLAVMDGCRNGQIKLLYIAPERLV 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
++F+ +L+ A +A+DE HC S WGHDFRP+Y+ L LK FP +P++ LTA
Sbjct: 128 M-ENFLEQLEHWRPA----LLAVDEAHCISQWGHDFRPEYRALGQLKRRFPALPVIALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADEATRGDIVRLLDLNQPLIQVSSFDRPNIRYTLVEKFKP------LDQLWRFVQDQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIA 280
+SGIIY S + ED L++RGL V+AYHA L++ ++A
Sbjct: 236 GKSGIIYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRTIESYYQ 322
>gi|336248080|ref|YP_004591790.1| ATP-dependent DNA helicase RecQ [Enterobacter aerogenes KCTC 2190]
gi|444353809|ref|YP_007389953.1| ATP-dependent DNA helicase RecQ [Enterobacter aerogenes EA1509E]
gi|334734136|gb|AEG96511.1| ATP-dependent DNA helicase RecQ [Enterobacter aerogenes KCTC 2190]
gi|443904639|emb|CCG32413.1| ATP-dependent DNA helicase RecQ [Enterobacter aerogenes EA1509E]
Length = 608
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 170/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q + I AL +D +++MPT S + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQESIIATALEGRDCLVVMPTGGGKSLCYQVPALVLGGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T +++++ S ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQQEVMAGCRSGQIRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L LA +A+DE HC S WGHDFRP+Y L L+ P +P + LTA
Sbjct: 128 LD-NFLEHLSHWN----LAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPHIPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRYMLMEKFKP------LDQLMRYVQDQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+++ ++A
Sbjct: 236 GKSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENDIRADVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|443324439|ref|ZP_21053192.1| ATP-dependent DNA helicase RecQ [Xenococcus sp. PCC 7305]
gi|442795958|gb|ELS05292.1| ATP-dependent DNA helicase RecQ [Xenococcus sp. PCC 7305]
Length = 709
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 170/334 (50%), Gaps = 29/334 (8%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDF 68
+ S LK F FR Q I AL +D ++IMPT S ++ ++LK +
Sbjct: 5 LESALKHFFGYDSFRAGQRKIIEEALNNQDLLVIMPTGGGKSLCFQLPALLKEGLTIVVS 64
Query: 69 RPNQLAAINIALLKKDAI---IIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSF 125
L + L+ + I + T + + + +KLLYV+PE+L K F
Sbjct: 65 PLIALMKDQVDALQDNGIGATFLNSTLDYAEGRSRQEAILAGKIKLLYVAPERLLTEK-F 123
Query: 126 MTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTK 185
+ L ++ L IAIDE HC S WGHDFRP+Y+ L L++ FP PI TATAT +
Sbjct: 124 RSFLLRVANGLGLNAIAIDEAHCVSEWGHDFRPEYRQLKQLRSQFPQTPIFAFTATATKR 183
Query: 186 VMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIY 245
V D+ + L + D V A FNRPNL YEV+ K K+ +L L R ++ SGI+Y
Sbjct: 184 VQDDIIQQLGLRDANVHLASFNRPNLHYEVKSK---DKNSYYQL--LKDIRRQSGSGIVY 238
Query: 246 TTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDK 287
S + E++ +L++ G+ YHA LE+ V ++AFG+GI+K
Sbjct: 239 CLSRRRVEEIALKLKHDGIDALPYHAGLEAEVRSHNQTRFLRDDARVIVATVAFGMGINK 298
Query: 288 PNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRS 321
P+VRFV H L +S+E+FYQ S G + +S
Sbjct: 299 PDVRFVFHFDLPRSLESFYQESGRAGRDGETAKS 332
>gi|423111286|ref|ZP_17098981.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5243]
gi|423117298|ref|ZP_17104989.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5245]
gi|376376415|gb|EHS89194.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5245]
gi|376377058|gb|EHS89832.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5243]
Length = 608
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 170/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q I+ AL +D +++MPT S + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQETIIDTALAGRDCLVVMPTGGGKSLCYQVPALVLGGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T +++++ S ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQQEVMAGCRSGQIRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L L+ +A+DE HC S WGHDFRP+Y L L+ P +P + LTA
Sbjct: 128 LD-NFLEHLTHWN----LSMVAVDEAHCISQWGHDFRPEYAALGQLRQRIPQIPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRRDIVRLLGLSDPLIQVSSFDRPNIRYMLMEKFKP------LDQLMRYVQDQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+++ ++A
Sbjct: 236 GKSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENHIRADVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|428771662|ref|YP_007163452.1| ATP-dependent DNA helicase RecQ [Cyanobacterium aponinum PCC 10605]
gi|428685941|gb|AFZ55408.1| ATP-dependent DNA helicase RecQ [Cyanobacterium aponinum PCC 10605]
Length = 707
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 112/328 (34%), Positives = 167/328 (50%), Gaps = 33/328 (10%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN---- 64
+R LK F FR Q I AL +D +IIMPT S ++ ++LK
Sbjct: 4 LRQSLKKYFGYDSFREGQEEIIQNALNNRDLLIIMPTGGGKSLCFQLPALLKKGVTIVIS 63
Query: 65 -LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSK 123
L +Q+ +++ + A I T + K + S +KLLY++PE+L S+
Sbjct: 64 PLISLMQDQVMSLHDNGI--GATFINSTLDFQEIKHREQLILSGKIKLLYLAPERLI-SE 120
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
F + L + K +A AIDE HC S WGHDFR +Y+ L L+ FP +PI LTATAT
Sbjct: 121 KFQSFLNTVAKTNAIASFAIDEAHCISEWGHDFRLEYRQLRQLRQRFPQIPITALTATAT 180
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
+V D+ + L++ + ++ + FNRPNL+YEVR + + +L + + SGI
Sbjct: 181 PRVQQDIIQQLRLRNPIIRRFSFNRPNLYYEVRPREKRNYHQILQLINSLE-----GSGI 235
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGI 285
IY + K EDL LR + YH L + ++AFG+GI
Sbjct: 236 IYCLARKTTEDLAYRLRQDNISALPYHGGLTDEMRSHHQDCFIRDDARIMVATVAFGMGI 295
Query: 286 DKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+KP+VRFVIHH L +++E++YQ S G
Sbjct: 296 NKPDVRFVIHHDLPRNIESYYQESGRAG 323
>gi|429750375|ref|ZP_19283426.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 332
str. F0381]
gi|429165304|gb|EKY07364.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 332
str. F0381]
Length = 727
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/334 (35%), Positives = 174/334 (52%), Gaps = 52/334 (15%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSV 58
D + S LK F F+ +Q I + K++ +IMPT S + V
Sbjct: 4 DDLHSALKHYFGFESFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAIV 63
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS--LKLLYVSP 116
+ L NQ+ A+ + D+I + L K + +M + S+ KLLYV+P
Sbjct: 64 ISP---LIALMKNQVDAMR-GISSTDSIAHVLNSSLTKNEIREVMEDISNGKTKLLYVAP 119
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPI 175
E L K + K ++ +A+DE HC S WGHDFRP+Y+ + +I++ + ++PI
Sbjct: 120 ESLIKEE-----YANFLKTVPISFVAVDEAHCISEWGHDFRPEYRNIKTIIERLGTNIPI 174
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATAT KV D+ K L + D V K+ FNRPNL+YEVR K +D AD++
Sbjct: 175 VALTATATPKVQEDILKNLAMTDANVFKSSFNRPNLYYEVRPKTK----NVD--ADII-- 226
Query: 236 RFRNQ----SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------------- 277
RF Q SGIIY S K+ E+L + L+ G+ YHA L++
Sbjct: 227 RFVKQNPKKSGIIYCLSRKKVEELTQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVD 286
Query: 278 ----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 287 VVVATIAFGMGIDKPDVRFVIHHDIPKSIESYYQ 320
>gi|390440423|ref|ZP_10228752.1| ATP-dependent DNA helicase recQ [Microcystis sp. T1-4]
gi|389836165|emb|CCI32878.1| ATP-dependent DNA helicase recQ [Microcystis sp. T1-4]
Length = 703
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 110/328 (33%), Positives = 158/328 (48%), Gaps = 73/328 (22%)
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----------LLKKKK--- 99
+ + LK F FRPNQ I AL +D ++IMPTG L+KK
Sbjct: 5 ESLEKALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 100 ----ICLMTES--------------------------------SSLKLLYVSPEKLAKSK 123
I LM + +KLLYV+PE+L S
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPERLL-SP 123
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
SF+ L + LA +A+DE HC S WGHDFRP+Y+ + ++ FP VPIL LTATAT
Sbjct: 124 SFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTATAT 183
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
+V D+ + L + D + A FNRPNL+YEV+ K + L + + + SGI
Sbjct: 184 QQVREDIIQQLGLRDTSIHTASFNRPNLYYEVQPKTSKSYQQLYQYI-----KGQKGSGI 238
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGI 285
+Y S K + + E+L+ G+ YHA ++ +IAFG+GI
Sbjct: 239 VYCISRKTVDKVAEQLQKDGIDALPYHAGMDDRERSENQTRFIRDDVQIMVATIAFGMGI 298
Query: 286 DKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+KP+VRFV+H+ L +++E +YQ S G
Sbjct: 299 NKPDVRFVVHYDLPRNLEGYYQESGRAG 326
>gi|145628391|ref|ZP_01784192.1| organic solvent tolerance protein [Haemophilus influenzae 22.1-21]
gi|145638475|ref|ZP_01794085.1| organic solvent tolerance protein [Haemophilus influenzae PittII]
gi|260583174|ref|ZP_05850954.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae NT127]
gi|386266538|ref|YP_005830030.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae R2846]
gi|144980166|gb|EDJ89825.1| organic solvent tolerance protein [Haemophilus influenzae 22.1-21]
gi|145272804|gb|EDK12711.1| organic solvent tolerance protein [Haemophilus influenzae PittII]
gi|260093792|gb|EEW77700.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae NT127]
gi|309751607|gb|ADO81591.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae R2866]
gi|309973774|gb|ADO96975.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae R2846]
Length = 619
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/325 (36%), Positives = 169/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
SVLKS F FR Q IN AL +DA+++M T S D + V+
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A I +A + + L +++++ S LKLLYVSPEK+ +
Sbjct: 78 ISLMKDQVDQLQANGI-----EADFLNSSQTLAQQQQVQNKLISGQLKLLYVSPEKVM-T 131
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
SF + Y C IAIDE HC S WGHDFRP+Y L LK FPD PI+ LTATA
Sbjct: 132 NSFFQLIS--YSKVCF--IAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATA 187
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFY--EVRIKPAAQKDCLDELADLMSRRFRNQ 240
D+ + L +++ F+RPN+ Y E + KP +++L + + + +
Sbjct: 188 DYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKP------MEQLTRFVLAQ-KGK 240
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282
SGIIY S + E + E LRN+G+ +AYHA +E+ + +IAFG
Sbjct: 241 SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFG 300
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+K NVRFV H L +S+E++YQ
Sbjct: 301 MGINKSNVRFVAHFDLPRSIESYYQ 325
>gi|340001407|ref|YP_004732291.1| ATP-dependent DNA helicase [Salmonella bongori NCTC 12419]
gi|339514769|emb|CCC32539.1| ATP-dependent DNA helicase [Salmonella bongori NCTC 12419]
Length = 609
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 170/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 13 AKRVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 128 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA LD+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRLDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ + ++A
Sbjct: 236 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|429112524|ref|ZP_19174294.1| ATP-dependent DNA helicase RecQ [Cronobacter malonaticus 507]
gi|426313681|emb|CCK00407.1| ATP-dependent DNA helicase RecQ [Cronobacter malonaticus 507]
Length = 609
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 168/333 (50%), Gaps = 47/333 (14%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
Y + VL+ F FRP Q I+ L +D +++MPT Y V++
Sbjct: 7 YSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKTG 66
Query: 58 ---VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYV 114
V+ +L + +QL A +A A + T +++ + + ++LLY+
Sbjct: 67 LTIVVSPLISLMKDQVDQLLANGVA-----AACLNSTQSRDEQQAVMAGCRTGQVRLLYI 121
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PE+L M LA +A+DE HC S WGHDFRP+Y L L+ FP VP
Sbjct: 122 APERL-----MMDNFIDTLGYWDLAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVP 176
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADL 232
+ LTATA D+ ++L ++D ++ + F+RPN+ Y + + KP LD+L
Sbjct: 177 FVALTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKP------LDQLMRY 230
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------- 277
+ + R +SGIIY S + ED L++RG+ +AYHA LE V
Sbjct: 231 VQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQI 289
Query: 278 ---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 290 VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|419839751|ref|ZP_14363154.1| ATP-dependent DNA helicase RecQ [Haemophilus haemolyticus HK386]
gi|386909096|gb|EIJ73776.1| ATP-dependent DNA helicase RecQ [Haemophilus haemolyticus HK386]
Length = 619
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 168/325 (51%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
SVLKS F FR Q IN AL +DA+++M T S D + V+
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A I +A + + L +++++ S LKLLYVSPEK+ +
Sbjct: 78 ISLMKDQVDQLQANGI-----EADFLNSSQTLEQQQRVQNKLISGQLKLLYVSPEKVMTN 132
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
F ++ ++ IAIDE HC S WGHDFRP+Y L LK FP PI+ LTATA
Sbjct: 133 SFF-----QLISYSKVSFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPHAPIMALTATA 187
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFY--EVRIKPAAQKDCLDELADLMSRRFRNQ 240
D+ L +E+ F+RPN+ Y E + KP +++L + + + +
Sbjct: 188 DYATRQDILTHLNLENPHRYIGSFDRPNIRYTLEEKYKP------MEQLIRFVLAQ-KGK 240
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES-------------NV-----SIAFG 282
SGIIY S + E + E LRN+G+ +AYHA +E+ NV +IAFG
Sbjct: 241 SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAFRERVQQDFQRDNVQVVVATIAFG 300
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+K NVRFV H L +S+E++YQ
Sbjct: 301 MGINKSNVRFVAHFDLPRSIESYYQ 325
>gi|189462633|ref|ZP_03011418.1| hypothetical protein BACCOP_03325 [Bacteroides coprocola DSM 17136]
gi|189430794|gb|EDU99778.1| ATP-dependent DNA helicase RecQ [Bacteroides coprocola DSM 17136]
Length = 607
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 155/320 (48%), Gaps = 81/320 (25%)
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC-----LMTESSSL--- 109
LKS F T FRP Q I L KKD +++MPTG K IC L+ E +++
Sbjct: 5 TLKSYFGYTQFRPLQEEIITQILHKKDTLVLMPTGG---GKSICYQLPALLMEGTAIVVS 61
Query: 110 --------------------------------------------KLLYVSPEKLAKSKSF 125
KLLY+SPE+L +F
Sbjct: 62 PLISLMKDQVESLQANGIIARALNSTNDETTDANIRFECRQGRVKLLYISPERLMGEVNF 121
Query: 126 MTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTK 185
+ K + ++ AIDE HC S WGHDFRP+Y L IL+ FPDVP++ LTATA
Sbjct: 122 LMKDIR------ISLFAIDEAHCISQWGHDFRPEYTQLKILRQQFPDVPVVALTATADKI 175
Query: 186 VMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIY 245
D+ + L ++D + + F+RPNL +V+ + QK+ + + D ++R R +SGIIY
Sbjct: 176 TRQDIIRQLAMKDPQIFISSFDRPNLSLDVK-RGFQQKEKMRTIFDFIARH-RGESGIIY 233
Query: 246 TTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDK 287
S + E + E L G+ + YHA L + +IAFG+GIDK
Sbjct: 234 CMSRSKTEKVAEMLEEHGIATAVYHAGLSTAAREAAQDDFINDRVQVVCATIAFGMGIDK 293
Query: 288 PNVRFVIHHCLSKSMENFYQ 307
NVR+VIH+ L KS+E+FYQ
Sbjct: 294 SNVRWVIHYNLPKSIESFYQ 313
>gi|145630467|ref|ZP_01786247.1| ATP-dependent DNA helicase [Haemophilus influenzae R3021]
gi|144983857|gb|EDJ91299.1| ATP-dependent DNA helicase [Haemophilus influenzae R3021]
Length = 619
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/325 (36%), Positives = 169/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
SVLKS F FR Q IN AL +DA+++M T S D + V+
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A I +A + + L +++++ S LKLLYVSPEK+ +
Sbjct: 78 ISLMKDQVDQLQANGI-----EADFLNSSQTLAQQQQVQNKLISGQLKLLYVSPEKVM-T 131
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
SF + Y C IAIDE HC S WGHDFRP+Y L LK FPD PI+ LTATA
Sbjct: 132 NSFFQLIS--YSKVCF--IAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATA 187
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFY--EVRIKPAAQKDCLDELADLMSRRFRNQ 240
D+ + L +++ F+RPN+ Y E + KP +++L + + + +
Sbjct: 188 DYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKP------MEQLTRFVLAQ-KGK 240
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282
SGIIY S + E + E LRN+G+ +AYHA +E+ + +IAFG
Sbjct: 241 SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFG 300
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+K NVRFV H L +S+E++YQ
Sbjct: 301 MGINKSNVRFVAHFDLPRSIESYYQ 325
>gi|332882051|ref|ZP_08449686.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|357048209|ref|ZP_09109763.1| ATP-dependent DNA helicase RecQ [Paraprevotella clara YIT 11840]
gi|332679975|gb|EGJ52937.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|355528792|gb|EHG98270.1| ATP-dependent DNA helicase RecQ [Paraprevotella clara YIT 11840]
Length = 608
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 167/330 (50%), Gaps = 51/330 (15%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS------- 61
++++LK F FRP Q I L D +++MPT S +V ++++
Sbjct: 1 MQNILKRYFGFDSFRPLQEDIIGNILAGHDVVVLMPTGGGKSLCYQVPALMREGTTVVIS 60
Query: 62 ------KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVS 115
K + R N + A + + +A + + + CL E LKLLY+S
Sbjct: 61 PLISLMKDQVEGLRANGVPAAALNSMNDEA-------ESARVRAACLRGE---LKLLYIS 110
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE+L M +L + + ++ A+DE HC S WGHDFRP+Y L +L+ FPDVPI
Sbjct: 111 PERL------MLELPYLIRDMKVSLFAVDEAHCISQWGHDFRPEYAQLGLLRQTFPDVPI 164
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATA D+QK L + D VV + F+RPNL +V+ + +KD + +L++R
Sbjct: 165 VALTATADRLTREDIQKQLALSDPVVFISSFDRPNLSLDVK-RGYQKKDKDRAILELIAR 223
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
+ GIIY S K E + E LR + AYHA L +
Sbjct: 224 H-PDDCGIIYCLSKKTTESVAEMLRGHDIAAVAYHAGLPTEERERAQDDFIHDRVQVVCA 282
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GIDK NVRFVIH+ L KS+E FYQ
Sbjct: 283 TVAFGMGIDKSNVRFVIHYNLPKSIEGFYQ 312
>gi|291615730|ref|YP_003518472.1| RecQ [Pantoea ananatis LMG 20103]
gi|378769205|ref|YP_005197680.1| ATP-dependent DNA helicase RecQ [Pantoea ananatis LMG 5342]
gi|386081281|ref|YP_005994806.1| ATP-dependent DNA helicase RecQ [Pantoea ananatis PA13]
gi|291150760|gb|ADD75344.1| RecQ [Pantoea ananatis LMG 20103]
gi|354990462|gb|AER34586.1| ATP-dependent DNA helicase RecQ [Pantoea ananatis PA13]
gi|365188693|emb|CCF11643.1| ATP-dependent DNA helicase RecQ [Pantoea ananatis LMG 5342]
Length = 608
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/327 (33%), Positives = 170/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS----VLK 60
+ VL+ F FRP Q IN AL +D +++MPT Y VR V+
Sbjct: 13 AQQVLQDTFGYQQFRPGQQTIINEALSGRDCLVVMPTGGGKSLCYQIPALVREGLTLVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T +++ + + +KLLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTMTREQQQVVMADCRNGRVKLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L + C+ +A+DE HC S WGHDFRP+Y L ++ FPD+P++ LTA
Sbjct: 128 MD-NFLDSL--AHWQPCM--LAVDEAHCISQWGHDFRPEYGALGQMRQRFPDLPVMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA LD+ +L ++D ++ + F+RPN+ Y + + KP Q L + D R
Sbjct: 183 TADETTRLDIINLLHMQDPLIQISSFDRPNIRYTLVEKFKPTEQ--LLRYVQDQ-----R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIA 280
+ GIIY S + ED L++RGL V AYHA ++S ++A
Sbjct: 236 GKCGIIYCNSRAKVEDTAARLQSRGLSVGAYHAGIDSAQRARVQEAFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|407685941|ref|YP_006801114.1| ATP-dependent DNA helicase [Alteromonas macleodii str. 'Balearic
Sea AD45']
gi|407289321|gb|AFT93633.1| ATP-dependent DNA helicase [Alteromonas macleodii str. 'Balearic
Sea AD45']
Length = 613
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/333 (32%), Positives = 169/333 (50%), Gaps = 47/333 (14%)
Query: 6 PWSDRVRS---VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVR 56
P + RV++ VLK F FR Q I+ KDA++++PT Y VR
Sbjct: 12 PETQRVKTPETVLKDVFGYDAFRDGQGEVIHQVCEGKDALVLLPTGGGKSLCYQIPALVR 71
Query: 57 S----VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLL 112
V+ +L + QL A+ + A + T + ++ +I ++ L LL
Sbjct: 72 QGTAIVVSPLISLMQDQVEQLKALGVK-----AAYLNSTLEADEQARINDALQAGKLDLL 126
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
YVSPE+L Q+ +A AIDE HC S WGHDFR DY+ L +K+ FP
Sbjct: 127 YVSPERL-----MQYYFQQSLAHADIALFAIDEAHCVSHWGHDFRQDYRALGQIKSRFPS 181
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
+P++GLTATA + D+ L + D +V K F+RPN+ Y V K A D++
Sbjct: 182 IPVIGLTATADSATQADILTQLNLNDPLVYKGSFDRPNIRYRVMSKYKA----FDQVVAY 237
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
+ + + SGIIY S + +DL +L +G R +AYHA ++++
Sbjct: 238 VKQ--QEGSGIIYCNSRAKVDDLHAKLFRQGFRCAAYHAGMDNDERELVQRQFLNDKIDI 295
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+K NVR+V+HH + +S+E++YQ
Sbjct: 296 VVATVAFGMGINKSNVRYVVHHDVPRSVESYYQ 328
>gi|154492528|ref|ZP_02032154.1| hypothetical protein PARMER_02162 [Parabacteroides merdae ATCC
43184]
gi|154087753|gb|EDN86798.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae ATCC 43184]
Length = 621
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 171/329 (51%), Gaps = 53/329 (16%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTD-FRPN 71
S+LK F T FRP Q I L K+D++++MPT +S+ F L + P
Sbjct: 18 SLLKRFFGYTSFRPLQAEIIQRTLQKEDSLVLMPTGGG-----KSIC---FQLPAIYMPG 69
Query: 72 QLAAIN--IALLKK--DAII-----------IMPTGKLLKKKKICLMTESSSLKLLYVSP 116
++ IAL+K + +I +MP + + +++C+ +KLLY+SP
Sbjct: 70 TAIVVSPLIALMKDQVEGLIANGIPAATLNSMMPEEERHRVRQLCI---QGKVKLLYISP 126
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
E +++L + ++ IAIDE HC S WGHDFRP+Y LS+LK FP VPI+
Sbjct: 127 E------GIISELHWLLPRIDISLIAIDEAHCISHWGHDFRPEYTQLSVLKENFPKVPII 180
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATA D+ L++ D + F+RPNL +R + ++K+ + + ++R
Sbjct: 181 ALTATADKITRTDILNQLKLRDPKTFISSFDRPNLSLTIR-RGLSKKEKIAAIVHFINRH 239
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
R QSGIIY S E L EEL +R AYHA L S+ +
Sbjct: 240 HR-QSGIIYCMSRNSTESLVEELSEYSIRAVAYHAGLSSDKREKAQDDFINDRVNVVCAT 298
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+AFG+GIDK NVR+VIH+ + S+EN+YQ
Sbjct: 299 VAFGMGIDKSNVRWVIHYNMPASIENYYQ 327
>gi|407682057|ref|YP_006797231.1| ATP-dependent DNA helicase [Alteromonas macleodii str. 'English
Channel 673']
gi|407243668|gb|AFT72854.1| ATP-dependent DNA helicase [Alteromonas macleodii str. 'English
Channel 673']
Length = 613
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/333 (32%), Positives = 169/333 (50%), Gaps = 47/333 (14%)
Query: 6 PWSDRVRS---VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVR 56
P + RV++ VLK F FR Q I+ KDA++++PT Y VR
Sbjct: 12 PETQRVKTPETVLKDVFGYDAFRDGQGEVIHQVCEGKDALVLLPTGGGKSLCYQIPALVR 71
Query: 57 S----VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLL 112
V+ +L + QL A+ + A + T + ++ +I ++ L LL
Sbjct: 72 QGTAIVVSPLISLMQDQVEQLKALGVK-----AAYLNSTLEADEQARINDALQAGKLDLL 126
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
YVSPE+L Q+ +A AIDE HC S WGHDFR DY+ L +K+ FP
Sbjct: 127 YVSPERL-----MQYYFQQSLAHADIALFAIDEAHCVSHWGHDFRQDYRALGQIKSRFPS 181
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
+P++GLTATA + D+ L + D +V K F+RPN+ Y V K A D++
Sbjct: 182 IPVIGLTATADSATQADILTQLNLNDPLVYKGSFDRPNIRYRVMSKYKA----FDQVVAY 237
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
+ + + SGIIY S + +DL +L +G R +AYHA ++++
Sbjct: 238 VKQ--QEGSGIIYCNSRAKVDDLHAKLFRQGFRCAAYHAGMDNDERELVQRQFLNDKIDI 295
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+K NVR+V+HH + +S+E++YQ
Sbjct: 296 VVATVAFGMGINKSNVRYVVHHDVPRSVESYYQ 328
>gi|421724743|ref|ZP_16163951.1| ATP-dependent DNA helicase RecQ [Klebsiella oxytoca M5al]
gi|410374417|gb|EKP29090.1| ATP-dependent DNA helicase RecQ [Klebsiella oxytoca M5al]
Length = 608
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 170/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q I+ AL +D +++MPT S + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQDTIIDTALAGRDCLVVMPTGGGKSLCYQVPALVLGGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T +++++ S ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQQEVMAGCRSGQIRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L L+ +A+DE HC S WGHDFRP+Y L L+ P +P + LTA
Sbjct: 128 LD-NFLEHLTHWN----LSMVAVDEAHCISQWGHDFRPEYAALGQLRQRIPHIPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRRDIVRLLDLNDPLIQVSSFDRPNIRYMLMEKFKP------LDQLMRYVQDQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+++ ++A
Sbjct: 236 GKSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENHIRADVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|302818699|ref|XP_002991022.1| hypothetical protein SELMODRAFT_41328 [Selaginella moellendorffii]
gi|300141116|gb|EFJ07830.1| hypothetical protein SELMODRAFT_41328 [Selaginella moellendorffii]
Length = 600
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 113/328 (34%), Positives = 171/328 (52%), Gaps = 28/328 (8%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLT-- 66
+ +L+ F + FR QL AI L KD +MPT S ++ ++ K L
Sbjct: 1 LEDLLQRYFGHSSFRGLQLDAIEAVLAGKDCFCMMPTGAGKSLCYQIPALAKPGIVLVVS 60
Query: 67 ---DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSK 123
+Q+AA+ + + + K+ K L + +LKLLYV+PE +A +
Sbjct: 61 PLIALMEDQVAALKSRQIFAEYLSSSQPVKMRNKIFEELQSGKPNLKLLYVTPESVA-TN 119
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
M KL+K+++ L+ IAIDE HC SSWGHDFRP Y+ LS L+T PD+PIL LTATA+
Sbjct: 120 HLMQKLRKLHERSLLSLIAIDEAHCISSWGHDFRPSYRKLSALRTSLPDIPILALTATAS 179
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
KV D+ K L ++ V+ + FNR N+FYEVR K ++L +++++ + I
Sbjct: 180 KKVQEDIIKSLSLQKAAVLISSFNRANIFYEVRFKD-LMTSAYEDLRNIITKA-PTRCMI 237
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGI 285
IY + C+++ L++ G+ YHA + +IAFG GI
Sbjct: 238 IYCHARAMCDEIGSRLKSDGISCRVYHAGINVKARSQALQDWVLGEVHIIVATIAFGYGI 297
Query: 286 DKPNVRFVIHHCLSKSMENFYQVSIAFG 313
D+ +VR V H + KS+E+FYQ S G
Sbjct: 298 DRKDVRMVCHFNMPKSLESFYQESGRAG 325
>gi|384098146|ref|ZP_09999265.1| ATP-dependent DNA helicase recQ [Imtechella halotolerans K1]
gi|383836292|gb|EID75705.1| ATP-dependent DNA helicase recQ [Imtechella halotolerans K1]
Length = 733
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 166/330 (50%), Gaps = 56/330 (16%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFN 64
LK F F+ Q I + ++ +IMPT S D V+
Sbjct: 12 LKHYFGFGKFKGLQEDVIKSIINNQNTFVIMPTGGGKSLCYQLPALVKDGTAIVISP--- 68
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKK--KKICLMTESSSLKLLYVSPEKLAKS 122
L NQ+ AI + + I + L K K++ +S KLLYV+PE L K
Sbjct: 69 LIALMKNQVDAIR-GISSNNGIAHVLNSSLTKTEVKQVMQDIKSGITKLLYVAPESLTKE 127
Query: 123 K--SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLT 179
F+ +Q ++ +A+DE HC S WGHDFRP+Y+ + +I+K + D+PI+GLT
Sbjct: 128 DYIEFLRTIQ-------ISFVAVDEAHCISEWGHDFRPEYRNIRAIIKRLGDDIPIIGLT 180
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATAT KV D+ K L + D KA FNRPNL+YEVR K AD++ RF
Sbjct: 181 ATATPKVQEDILKNLGMTDAKTFKASFNRPNLYYEVRPKTKNVD------ADII--RFIK 232
Query: 240 Q----SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------ 277
Q SGIIY S K E+L + L+ G+ YHA L++
Sbjct: 233 QNPGKSGIIYCLSRKRVEELAQVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVA 292
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 293 TIAFGMGIDKPDVRFVIHHDIPKSIESYYQ 322
>gi|260596045|ref|YP_003208616.1| ATP-dependent DNA helicase RecQ [Cronobacter turicensis z3032]
gi|260215222|emb|CBA27089.1| ATP-dependent DNA helicase recQ [Cronobacter turicensis z3032]
Length = 635
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 167/333 (50%), Gaps = 47/333 (14%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
Y + VL+ F FRP Q I+ L +D +++MPT Y V++
Sbjct: 33 YSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKTG 92
Query: 58 ---VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYV 114
V+ +L + +QL A +A A + T ++ + + ++LLY+
Sbjct: 93 LTIVVSPLISLMKDQVDQLLANGVA-----AACLNSTQSRDEQHAVMAGCRTGEVRLLYI 147
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PE+L M LA +A+DE HC S WGHDFRP+Y L L+ FP VP
Sbjct: 148 APERL-----MMDNFIDTLGYWDLAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVP 202
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADL 232
+ LTATA D+ ++L ++D ++ + F+RPN+ Y + + KP LD+L
Sbjct: 203 FIALTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKP------LDQLMRY 256
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------- 277
+ + R +SGIIY S + ED L++RG+ +AYHA LE V
Sbjct: 257 VQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQI 315
Query: 278 ---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 316 VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQ 348
>gi|397655279|ref|YP_006495981.1| ATP-dependent DNA helicase RecQ [Klebsiella oxytoca E718]
gi|394344006|gb|AFN30127.1| ATP-dependent DNA helicase RecQ [Klebsiella oxytoca E718]
Length = 608
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q I+ AL +D +++MPT S + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQETIIDTALAGRDCLVVMPTGGGKSLCYQVPALVLGGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T +++ + S ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQQDVMAGCRSGQIRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L L+ +A+DE HC S WGHDFRP+Y L L+ P +P + LTA
Sbjct: 128 LD-NFLEHLTHWN----LSMVAVDEAHCISQWGHDFRPEYAALGQLRQRIPQIPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRRDIVRLLDLNDPLIQVSSFDRPNIRYMLMEKFKP------LDQLMRYVQDQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+++ ++A
Sbjct: 236 GKSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENHIRADVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|384247288|gb|EIE20775.1| ATP-dependent DNA helicase [Coccomyxa subellipsoidea C-169]
Length = 455
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 113/338 (33%), Positives = 165/338 (48%), Gaps = 40/338 (11%)
Query: 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DRVRSVLKSKFNLTDFR 69
F + FR Q I L +DA ++MPT S R +V+ S L
Sbjct: 12 FGNSAFREQQRRVIETVLKDRDAFVLMPTGGGKSLCYQLPAVISRGLTVVISP--LLSLM 69
Query: 70 PNQLAAINIALLKKDAIIIMPTGKLLKKKKIC---LMTESSSLKLLYVSPEKLAKSKSFM 126
+Q+ A+ + + + ++K+ L E ++KLLY++PE+L S +
Sbjct: 70 QDQVRALVTTASGGVPATYLNSQQTEREKRAVFSELQKEQPTVKLLYITPEQLVASAALA 129
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK-TMFPDVPILGLTATATTK 185
+ L+ + + G LAR +DE HC S WGHDFRPDY+ + +K + F +PIL LTATAT K
Sbjct: 130 STLESLQRRGLLARFVVDEAHCVSQWGHDFRPDYKKIGEVKASKFSRIPILALTATATDK 189
Query: 186 VMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK-----DCLDELADLMSRRFRNQ 240
V DV +L + C V F R NL V KP + L+ L + + + +N
Sbjct: 190 VKTDVLSILGMSSCPVFTVSFFRSNLVLSVVKKPTGRTPEGKPAELEALVNYIKAQGKNA 249
Query: 241 SGIIYTTSIKECEDLREELRNRG-LRVSAYHAKLESN------------------VSIAF 281
SGIIY S + L+ G + +YHA + +IAF
Sbjct: 250 SGIIYVISRDNTATVAAYLKEEGEISAHSYHAGMTPKQRVKVQNDWRSGELQVVVATIAF 309
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
G+GIDKP+VRFV+H+ LSKS+E +YQ + G GKHS
Sbjct: 310 GMGIDKPDVRFVVHYSLSKSIEGYYQEAGRAGRDGKHS 347
>gi|308462738|ref|XP_003093650.1| CRE-HIM-6 protein [Caenorhabditis remanei]
gi|308249588|gb|EFO93540.1| CRE-HIM-6 protein [Caenorhabditis remanei]
Length = 1039
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 112/346 (32%), Positives = 164/346 (47%), Gaps = 93/346 (26%)
Query: 52 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG------------------- 92
++ + S LKSKF FR Q I L+ D ++MPTG
Sbjct: 266 NEELYSTLKSKFGFNQFRHRQKQCILSTLMGNDTFVLMPTGAGKSLCYQLPAVILPGVTV 325
Query: 93 ------KLLKKKKI--------C------------------LMTESSSLKLLYVSPEKLA 120
L++ +K+ C L +E+ ++KLLYV+PEK++
Sbjct: 326 VVSPLRSLIEDQKMKMKELGIGCEALTADLSAGAQEDIYSDLTSENPTIKLLYVTPEKIS 385
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF--PDVPILGL 178
S ++ +++ G LAR IDE HC S WGHDFRPDY LS L+ F P VPI+ L
Sbjct: 386 ASGRLISVFYTLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSTLREKFHNPPVPIIAL 445
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFR 238
TATAT K++ D + L++++ + + F R NL Y+ + P A K ++ + + M + +
Sbjct: 446 TATATPKIVTDARDNLKMQNSKLFISSFVRDNLKYD--LIPKAAKSLIN-VVEKMKQLYP 502
Query: 239 NQSGIIYTTS-------------------IKECEDLREELRNRGLRVSAYHAKLESNV-- 277
+SGI+Y S KECE ++ L GL YHA L +
Sbjct: 503 GKSGIVYCLSRYKILQKKRQKIYLTLAFFRKECETVQMMLTKAGLSAEVYHAGLNDGLRV 562
Query: 278 ----------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIH+ L KS+E +YQ
Sbjct: 563 SVQKGWLANKFDVICATIAFGMGIDKPDVRFVIHYSLPKSIEGYYQ 608
>gi|198276172|ref|ZP_03208703.1| hypothetical protein BACPLE_02361 [Bacteroides plebeius DSM 17135]
gi|198270984|gb|EDY95254.1| ATP-dependent DNA helicase RecQ [Bacteroides plebeius DSM 17135]
Length = 727
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 165/328 (50%), Gaps = 49/328 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
+ LK F F+ NQ A I L KD ++MPT S D V+
Sbjct: 9 AALKKYFGFDTFKGNQEAIIRNLLSGKDTFVLMPTGGGKSLCYQLPSLLMDGTAIVISP- 67
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE--SSSLKLLYVSPEKLA 120
L NQ+ A+ ++D I L K + + + KLLYV+PE L
Sbjct: 68 --LIALMKNQVDAMR-NFSEEDGIAHFINSSLTKSATDQVKADIMAGKTKLLYVAPESLT 124
Query: 121 KSKS--FMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGL 178
K ++ F+ ++ ++ A+DE HC S WGHDFRP+Y+ + + P++ L
Sbjct: 125 KEENVDFLRHVK-------ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPVIAL 177
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPA-AQKDCLDELADLMSRRF 237
TATAT KV +D+QK L + D ++ FNRPNL+YEVR K A KD + + ++
Sbjct: 178 TATATPKVKMDIQKNLGMMDATEFRSSFNRPNLYYEVRAKSANVDKDIIKFI-----KQN 232
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SI 279
+SGIIY S K+ E+L E L G++ AYHA ++S +I
Sbjct: 233 EGKSGIIYCLSRKKVEELTEILLANGIKARAYHAGMDSATRNGNQDAFLKEDIDVIVATI 292
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
AFG+GIDKP+VRFVIH+ + KS+E +YQ
Sbjct: 293 AFGMGIDKPDVRFVIHYDVPKSLEGYYQ 320
>gi|294672822|ref|YP_003573438.1| ATP-dependent DNA helicase RecQ [Prevotella ruminicola 23]
gi|294473845|gb|ADE83234.1| ATP-dependent DNA helicase RecQ [Prevotella ruminicola 23]
Length = 722
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 120/341 (35%), Positives = 169/341 (49%), Gaps = 75/341 (21%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQ 72
+ LK F F+ +Q I + D ++MPT S Q
Sbjct: 5 AALKKYFGFDTFKGDQERIIQNLMDGNDTFVLMPTGGGKS----------------LCYQ 48
Query: 73 LAAINIALLKKDAIIIMPTGKLLKKKK--ICLMTES--------SSL------------- 109
L ++ L++ AI+I P L+K + I M+E+ SSL
Sbjct: 49 LPSL---LMEGTAIVISPLIALMKNQVDVITSMSETEGTAHYLNSSLNKAAIDQVKSDVM 105
Query: 110 ----KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSI 165
KLLYV+PE L K ++ + ++ ++ AIDE HC S WGHDFRP+Y+ +
Sbjct: 106 AGRTKLLYVAPESLTKEENV-----EFLRSVKISFYAIDEAHCISEWGHDFRPEYRKIRP 160
Query: 166 LKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPA-AQKD 224
+ PI+ LTATAT KV D++K L I D K+ FNRPNL+YEVR K A KD
Sbjct: 161 IVNEIGKAPIIALTATATDKVRTDIKKNLGIVDAAEFKSSFNRPNLYYEVRPKTANVDKD 220
Query: 225 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------- 277
+ ++ +SGIIY S K+ E+L E LR G++ +AYHA L+SN
Sbjct: 221 IIK-----FIKQHPGKSGIIYCLSRKKVEELAEILRVNGIKAAAYHAGLDSNTRSNTQDE 275
Query: 278 -----------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIH+ + KS+E +YQ
Sbjct: 276 FLMENIDVIVATIAFGMGIDKPDVRFVIHYDIPKSLEGYYQ 316
>gi|255535742|ref|YP_003096113.1| ATP-dependent DNA helicase RecQ [Flavobacteriaceae bacterium
3519-10]
gi|255341938|gb|ACU08051.1| ATP-dependent DNA helicase RecQ [Flavobacteriaceae bacterium
3519-10]
Length = 732
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 113/324 (34%), Positives = 174/324 (53%), Gaps = 44/324 (13%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DRVRSVLKSKFN 64
+LK F + F+ +Q I L +D ++MPT S +++ S
Sbjct: 11 LLKKYFGFSTFKGHQQEIIQNLLEGQDIFVLMPTGGGKSLCYQLPALMSEGTAIVVSP-- 68
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE---SSSLKLLYVSPEKLAK 121
L NQ+ A+N L D + L K +I + + + KLLYV+PE L K
Sbjct: 69 LIALMKNQVDAVN--GLSSDQGVAHVLNSSLNKTQIKQVFDDIRAGRTKLLYVAPESLIK 126
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
+ ++ L+++ ++ +AIDE HC S WGHDFRP+Y+ L ++ DVP++ LTAT
Sbjct: 127 -EDYLEFLKEV----KISFVAIDEAHCISEWGHDFRPEYRNLKLIIDKIADVPVIALTAT 181
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQS 241
AT KV D+QK L + + +V K FNRPNL+YEVR K + E+ ++ R + +S
Sbjct: 182 ATPKVQDDIQKTLGMSNALVFKESFNRPNLYYEVRPKVNIDR----EIVKFINAR-KGKS 236
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKL---------------ESNV---SIAFGL 283
GI+Y S ++ E+ + L+ G+ YHA L E++V +IAFG+
Sbjct: 237 GIVYCLSRRKVEEFAQLLQVNGINALPYHAGLDQKTRVMNQDKFLMEEADVIVATIAFGM 296
Query: 284 GIDKPNVRFVIHHCLSKSMENFYQ 307
GIDKP+VRFVIH+ + KS+E++YQ
Sbjct: 297 GIDKPDVRFVIHYDIPKSLESYYQ 320
>gi|238760167|ref|ZP_04621314.1| ATP-dependent DNA helicase recQ [Yersinia aldovae ATCC 35236]
gi|238701603|gb|EEP94173.1| ATP-dependent DNA helicase recQ [Yersinia aldovae ATCC 35236]
Length = 605
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 162/320 (50%), Gaps = 81/320 (25%)
Query: 57 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG------------------------ 92
VL+ F FRP Q IN L +D +++MPTG
Sbjct: 10 QVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSPL 69
Query: 93 ---------KLL--------------KKKKICLMT--ESSSLKLLYVSPEKLAKSKSFMT 127
+LL +++++ +M S +KLLY++PE+L +SF+
Sbjct: 70 ISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLYIAPERLVM-ESFLD 128
Query: 128 KLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVM 187
+L + A +A+DE HC S WGHDFRP+Y+ L LK FPD+P++ LTATA
Sbjct: 129 QLHQWRPA----LLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADEATR 184
Query: 188 LDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQSGIIY 245
D+ ++L + +V + F+RPN+ Y + + KP LD+L + + R +SGIIY
Sbjct: 185 GDILRLLNLSQPLVQVSSFDRPNIRYTLVEKFKP------LDQLWRFVQDQ-RGKSGIIY 237
Query: 246 TTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDK 287
S + ED L++RGL V+AYHA L++ ++AFG+GI+K
Sbjct: 238 CNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGINK 297
Query: 288 PNVRFVIHHCLSKSMENFYQ 307
PNVRFV+H + +++E++YQ
Sbjct: 298 PNVRFVVHFDIPRTIESYYQ 317
>gi|71030866|ref|XP_765075.1| DNA helicase [Theileria parva strain Muguga]
gi|68352031|gb|EAN32792.1| DNA helicase, putative [Theileria parva]
Length = 998
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 120/361 (33%), Positives = 171/361 (47%), Gaps = 58/361 (16%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIII------------MPTDYPWS 52
+ WS VR + + F FRPNQL AIN L D +I +P Y
Sbjct: 168 FEWSTLVRDINEKVFKNKSFRPNQLPAINCILSNIDTFVIIPTGGGKSLCFQLPAVYDTI 227
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLM--------- 103
S L +Q+ +N + AI G L +K+ +
Sbjct: 228 TGRGSTTIVVMPLLSLIGDQMKRLNKLNINCRAIF----GDLKLSEKLSIFNDLTKIGPK 283
Query: 104 -------------TESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCS 150
T + + +L+++PE L SK + L M+ ++R IDEVHC S
Sbjct: 284 VPNDVDSFMAVNNTNTDDISILFITPESLVGSKILLENLLTMHSRNKISRFVIDEVHCVS 343
Query: 151 SWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPN 210
WG+DFRP Y L +++ FPDVPIL LTATAT V DV L ++D V+ K+ FNR N
Sbjct: 344 QWGNDFRPHYGQLGMIRKHFPDVPILSLTATATEYVTKDVIAKLMLKDVVIFKSDFNRKN 403
Query: 211 LFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYH 270
L Y V K K +++L L+ ++F + GI+Y S E E + EL +R + YH
Sbjct: 404 LEYVVVEKSKHFKVAINQLVKLI-QQFEDSCGIVYCLSCGEAERVSAEL-SRVITCFHYH 461
Query: 271 AKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAF 312
A+L + V +IAFG+GIDK +VRFV+H +SKS+EN++Q S
Sbjct: 462 AQLSTIVRTNVYNDWINDRIKVIVATIAFGMGIDKKDVRFVVHFSVSKSIENYFQESGRA 521
Query: 313 G 313
G
Sbjct: 522 G 522
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG 92
++ WS VR + + F FRPNQL AIN L D +I+PTG
Sbjct: 167 EFEWSTLVRDINEKVFKNKSFRPNQLPAINCILSNIDTFVIIPTG 211
>gi|319775328|ref|YP_004137816.1| ATP-dependent DNA helicase [Haemophilus influenzae F3047]
gi|319897768|ref|YP_004135965.1| ATP-dependent DNA helicase [Haemophilus influenzae F3031]
gi|329122676|ref|ZP_08251254.1| ATP-dependent helicase RecQ [Haemophilus aegyptius ATCC 11116]
gi|317433274|emb|CBY81649.1| ATP-dependent DNA helicase [Haemophilus influenzae F3031]
gi|317449919|emb|CBY86131.1| ATP-dependent DNA helicase [Haemophilus influenzae F3047]
gi|327472550|gb|EGF17980.1| ATP-dependent helicase RecQ [Haemophilus aegyptius ATCC 11116]
Length = 619
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/325 (36%), Positives = 169/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
SVLKS F FR Q IN AL +DA+++M T S D + V+
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A I +A + + L +++++ S LKLLYVSPEK+ +
Sbjct: 78 ISLMKDQVDQLQANGI-----EADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKVM-T 131
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
SF + Y C IAIDE HC S WGHDFRP+Y L LK FPD PI+ LTATA
Sbjct: 132 NSFFQLIS--YSKVCF--IAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATA 187
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFY--EVRIKPAAQKDCLDELADLMSRRFRNQ 240
D+ + L +++ F+RPN+ Y E + KP +++L + + + +
Sbjct: 188 DYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKP------MEQLTRFVLAQ-KGK 240
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282
SGIIY S + E + E LRN+G+ +AYHA +E+ + +IAFG
Sbjct: 241 SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFG 300
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+K NVRFV H L +S+E++YQ
Sbjct: 301 MGINKSNVRFVAHFDLPRSIESYYQ 325
>gi|378696929|ref|YP_005178887.1| ATP-dependent DNA helicase [Haemophilus influenzae 10810]
gi|301169448|emb|CBW29048.1| ATP-dependent DNA helicase [Haemophilus influenzae 10810]
Length = 619
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/325 (36%), Positives = 169/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
SVLKS F FR Q IN AL +DA+++M T S D + V+
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A I +A + + L +++++ S LKLLYVSPEK+ +
Sbjct: 78 ISLMKDQVDQLQANGI-----EADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKVM-T 131
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
SF + Y C IAIDE HC S WGHDFRP+Y L LK FPD PI+ LTATA
Sbjct: 132 NSFFQLIS--YSKVCF--IAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATA 187
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFY--EVRIKPAAQKDCLDELADLMSRRFRNQ 240
D+ + L +++ F+RPN+ Y E + KP +++L + + + +
Sbjct: 188 DYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKP------MEQLTRFVLAQ-KGK 240
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282
SGIIY S + E + E LRN+G+ +AYHA +E+ + +IAFG
Sbjct: 241 SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFG 300
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+K NVRFV H L +S+E++YQ
Sbjct: 301 MGINKSNVRFVAHFDLPRSIESYYQ 325
>gi|67468457|ref|XP_650264.1| recQ family helicase [Entamoeba histolytica HM-1:IMSS]
gi|56466865|gb|EAL44882.1| recQ family helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449710010|gb|EMD49159.1| recQ family helicase [Entamoeba histolytica KU27]
Length = 774
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/339 (32%), Positives = 167/339 (49%), Gaps = 40/339 (11%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
N+ W +RV+ VL F+ R Q IN L + + +MPT S ++ S+ K
Sbjct: 366 NFHWKERVKEVLHKVFHHETLRLLQYPVINAILAGHNVLALMPTGGGKSLCYQLPSLFKD 425
Query: 62 KFNLT-----DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMT---ESSSLKLLY 113
+ L +Q+ A+N D I T + I + E+ +K++Y
Sbjct: 426 GYTLVVSPLISLMQDQVKALN------DLGIPAITCNSNNPENIDIFINDIETRKIKIVY 479
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
V+PE L+ S ++K+Y G + + IDE HC S WGHDFR Y L + FP V
Sbjct: 480 VAPELLSCSWKMNEAMKKLYDRGLFSYLVIDEAHCISQWGHDFRQSYVELREFRKTFPSV 539
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIK-PAAQKDCLDELADL 232
+ TATAT +V D+ + +E+ +V FNRPNL YE R+K P + D +
Sbjct: 540 QTILFTATATERVKNDILLSMGLEEAIVFNQTFNRPNLRYETRVKSPKVEVDIAHYI--- 596
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
++ NQ GI++ S K+CE L + L N G+R + YHA L++
Sbjct: 597 --QQHPNQCGIVFCLSKKDCESLSKFLINYGIRATHYHAGLDAKRRKKVQNDWMNGTFLV 654
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIH + S+E ++Q S G
Sbjct: 655 VCATVAFGMGIDKPDVRFVIHQTMPSSIEQYFQESGRAG 693
>gi|357450081|ref|XP_003595317.1| ATP-dependent DNA helicase Q1 [Medicago truncatula]
gi|355484365|gb|AES65568.1| ATP-dependent DNA helicase Q1 [Medicago truncatula]
Length = 776
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 106/270 (39%), Positives = 146/270 (54%), Gaps = 16/270 (5%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLT----- 66
VL+ F DFR QL AI L +D +MPT S ++ ++ K L
Sbjct: 33 VLRWHFGYPDFRGLQLEAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKEGIVLVVCPLI 92
Query: 67 DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFM 126
NQ+ A+ + + + T K K L + S +LLYV+PE +A + FM
Sbjct: 93 ALMENQVMALKEKGIAAEFLSSTKTAKAKDKIHEDLGSGKPSTRLLYVTPELIA-TPGFM 151
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186
+KL K++ G L+ IAIDE HC SSWGHDFRP Y+ LS L++ PDVPIL LTATA KV
Sbjct: 152 SKLTKIHSRGLLSLIAIDEAHCISSWGHDFRPTYRKLSTLRSHLPDVPILALTATAVPKV 211
Query: 187 MLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQS---GI 243
DV + L +++ +++K FNRPN++YEVR KD LD+ +S R ++ I
Sbjct: 212 QKDVVESLHMQNALILKTSFNRPNIYYEVRY-----KDLLDDSYSDLSDRLKSMGDVCAI 266
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKL 273
IY C+DL L RG+ +AYHA L
Sbjct: 267 IYCLERSMCDDLSAHLSQRGISCAAYHAGL 296
>gi|333381389|ref|ZP_08473071.1| ATP-dependent DNA helicase RecQ [Dysgonomonas gadei ATCC BAA-286]
gi|332830359|gb|EGK02987.1| ATP-dependent DNA helicase RecQ [Dysgonomonas gadei ATCC BAA-286]
Length = 731
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 120/341 (35%), Positives = 173/341 (50%), Gaps = 65/341 (19%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--------------- 52
+D++ LK F F+ NQ A I L +KD ++MPT S
Sbjct: 5 NDKLTVALKKHFGFDKFKGNQEAIIQNLLDEKDTFVLMPTGGGKSLCYQLPALLMEGTAV 64
Query: 53 --DRVRSVLKSKFN-LTDFRPNQLAA--INIALLKKDAIIIMPTGKLLKKKKICLMTESS 107
+ +++K++ + + +F A IN +L K A I G +L S
Sbjct: 65 IISPLIALMKNQVDAMRNFSEEDGVAHFINSSLNK--AAIEQVKGDIL----------SG 112
Query: 108 SLKLLYVSPEKLAKSKS--FMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSI 165
KLLYV+PE L K ++ F+ +++ ++ AIDE HC S WGHDFRP+Y+ +
Sbjct: 113 KTKLLYVAPESLTKEENIDFLRQIK-------ISFYAIDEAHCISEWGHDFRPEYRRIRP 165
Query: 166 LKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKP-AAQKD 224
+ T PI+ LTATAT KV LD+QK L + D V KA FNR NLFYEVR K KD
Sbjct: 166 IVTEIGKHPIIALTATATPKVQLDIQKNLGMVDADVFKASFNRENLFYEVRSKTNNVDKD 225
Query: 225 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------- 277
+ + + ++SGIIY S K+ E+ E L+ + YHA L++N
Sbjct: 226 IIKYI-----KSQGHKSGIIYCLSRKKVEEFAEILQTNNINALPYHAGLDANTRSANQDA 280
Query: 278 -----------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VR+VIH+ + KS+E +YQ
Sbjct: 281 FLMEQVDVIVATIAFGMGIDKPDVRYVIHYDMPKSLEGYYQ 321
>gi|16272669|ref|NP_438887.1| ATP-dependent DNA helicase [Haemophilus influenzae Rd KW20]
gi|260579821|ref|ZP_05847651.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae RdAW]
gi|2500112|sp|P71359.1|RECQ_HAEIN RecName: Full=ATP-dependent DNA helicase RecQ
gi|1573732|gb|AAC22387.1| ATP-dependent DNA helicase (recQ) [Haemophilus influenzae Rd KW20]
gi|260093105|gb|EEW77038.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae RdAW]
Length = 619
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/325 (36%), Positives = 169/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
SVLKS F FR Q IN AL +DA+++M T S D + V+
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A I +A + + L +++++ S LKLLYVSPEK+ +
Sbjct: 78 ISLMKDQVDQLQANGI-----EADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKVM-T 131
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
SF + Y C IAIDE HC S WGHDFRP+Y L LK FPD PI+ LTATA
Sbjct: 132 NSFFQLIS--YSKVCF--IAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATA 187
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFY--EVRIKPAAQKDCLDELADLMSRRFRNQ 240
D+ + L +++ F+RPN+ Y E + KP +++L + + + +
Sbjct: 188 DYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKP------MEQLTRFVLAQ-KGK 240
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282
SGIIY S + E + E LRN+G+ +AYHA +E+ + +IAFG
Sbjct: 241 SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFG 300
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+K NVRFV H L +S+E++YQ
Sbjct: 301 MGINKSNVRFVAHFDLPRSIESYYQ 325
>gi|392981231|ref|YP_006479819.1| ATP-dependent DNA helicase RecQ [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392327164|gb|AFM62117.1| ATP-dependent DNA helicase RecQ [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 609
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 168/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL F FRP Q I L +D +++MPT S + + V+
Sbjct: 13 AKQVLHETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVLNGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T +++++ + ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQTREQQQEVMAGCRTGQIRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP++P + LTA
Sbjct: 128 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPELPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA LD+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRLDIVRLLGLNDPLIQVSSFDRPNIRYMLMEKFKP------LDQLLRYVQEQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L+NRG +AYHA LE+++ ++A
Sbjct: 236 GKSGIIYCNSRAKVEDTAARLQNRGFSAAAYHAGLENHIRADVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|408491728|ref|YP_006868097.1| ATP-dependent DNA helicase RecQ [Psychroflexus torquis ATCC 700755]
gi|408469003|gb|AFU69347.1| ATP-dependent DNA helicase RecQ [Psychroflexus torquis ATCC 700755]
Length = 728
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 113/320 (35%), Positives = 170/320 (53%), Gaps = 36/320 (11%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-----LTD 67
LK F +F+ Q I + KD +IMPT S ++ +++K L
Sbjct: 10 LKKYFGFNEFKGLQEQVIKSIISNKDTFVIMPTGGGKSLCYQLPALIKEGTAIVVSPLIA 69
Query: 68 FRPNQLAAI-NIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFM 126
NQ+ AI NI+ A ++ + + K++ S KL+YV+PE L K
Sbjct: 70 LMKNQVDAIRNISEHHGVAHVLNSSLNKTQVKQVKEDISSGITKLVYVAPESLTK----- 124
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLTATATTK 185
T+ + K ++ +AIDE HC S WGHDFRP+Y+ L +I++ + ++PI+GLTATAT K
Sbjct: 125 TEYIEFLKGENISFLAIDEAHCISEWGHDFRPEYRNLKNIIERIGENIPIIGLTATATPK 184
Query: 186 VMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIY 245
V D+ K L+I + K FNRPNL+YE+R K D +D ++ +SGIIY
Sbjct: 185 VQEDILKNLRIPNSKTFKDSFNRPNLYYEIRPKT----DDVDSDIIKFVKKNSGKSGIIY 240
Query: 246 TTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDK 287
S K E L + L+ G++ YHA L++ +IAFG+GIDK
Sbjct: 241 CLSRKRVEQLSQALQVNGVKAVPYHAGLDAKSRSRHQDMFLMEDIDVVVATIAFGMGIDK 300
Query: 288 PNVRFVIHHCLSKSMENFYQ 307
P+VRFV+H+ + KS+E++YQ
Sbjct: 301 PDVRFVVHNDIPKSIESYYQ 320
>gi|296105298|ref|YP_003615444.1| ATP-dependent DNA helicase RecQ [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295059757|gb|ADF64495.1| ATP-dependent DNA helicase RecQ [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 630
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 168/326 (51%), Gaps = 47/326 (14%)
Query: 12 RSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKS 61
+ VL F FRP Q I L +D +++MPT S + + V+
Sbjct: 35 KQVLHETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVLNGLTVVVSP 94
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAK 121
+L + +QL A +A A + T +++++ + ++LLY++PE+L
Sbjct: 95 LISLMKDQVDQLLANGVA-----AACLNSTQTREQQQEVMAGCRTGQVRLLYIAPERLML 149
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP++P + LTAT
Sbjct: 150 D-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPELPFMALTAT 204
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRN 239
A LD+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 205 ADDTTRLDIVRLLGLNDPLIQVSSFDRPNIRYMLMEKFKP------LDQLLRYVQEQ-RG 257
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 281
+SGIIY S + ED L+NRG +AYHA LE+++ ++AF
Sbjct: 258 KSGIIYCNSRAKVEDTAARLQNRGFSAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAF 317
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GI+KPNVRFV+H + +++E++YQ
Sbjct: 318 GMGINKPNVRFVVHFDIPRNIESYYQ 343
>gi|423126736|ref|ZP_17114415.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5250]
gi|376396730|gb|EHT09369.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5250]
Length = 608
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q I+ AL +D +++MPT S + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQETIIDTALAGRDCLVVMPTGGGKSLCYQVPALVLGGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T +++ + S ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQQDVMAGCRSGQIRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L L+ +A+DE HC S WGHDFRP+Y L L+ P +P + LTA
Sbjct: 128 LD-NFLEHLTHWN----LSMVAVDEAHCISQWGHDFRPEYAALGQLRQRIPHIPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRRDIVRLLDLNDPLIQVSSFDRPNIRYMLMEKFKP------LDQLMRYVQDQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+++ ++A
Sbjct: 236 GKSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENHIRADVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|363580415|ref|ZP_09313225.1| ATP-dependent DNA helicase RecQ [Flavobacteriaceae bacterium HQM9]
Length = 728
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 169/329 (51%), Gaps = 44/329 (13%)
Query: 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DRVRSVLK 60
++ LK F + FR Q I L K+D +IMPT S +++
Sbjct: 5 ELQKALKKYFGFSQFRGLQEQVIKSLLKKEDTFVIMPTGGGKSLCYQLPALMSEGTAIVV 64
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKK--KICLMTESSSLKLLYVSPEK 118
S L NQ+ AI ++ ++ I + L K + + + KLLYV+PE
Sbjct: 65 SP--LIALMKNQVDAIR-SISSENGIAHVLNSSLNKTDVANVKMDISNGVTKLLYVAPES 121
Query: 119 LAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLS-ILKTMFPDVPILG 177
L K + + + ++ +A+DE HC S WGHDFRP+Y+ L I+K + ++PI+G
Sbjct: 122 LVKEE-----YAEFLASQTISFLAVDEAHCISEWGHDFRPEYRNLRRIIKGIGDNIPIIG 176
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPA-AQKDCLDELADLMSRR 236
LTATAT KV D+ K L I KA FNRPNLFYEVR K A + D + ++
Sbjct: 177 LTATATPKVQEDILKNLGISGANTFKASFNRPNLFYEVRPKTANVETDII-----RFVKQ 231
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------S 278
+SGIIY S K+ E+L + L+ G+ YHA L++ +
Sbjct: 232 NSEKSGIIYCLSRKKVEELAQALQVNGIIAVPYHAGLDAKTRAKHQDMFLMEDIDVVVAT 291
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
IAFG+GIDKP+VRFV+H+ + KS+E++YQ
Sbjct: 292 IAFGMGIDKPDVRFVVHYDIPKSIESYYQ 320
>gi|259906892|ref|YP_002647248.1| ATP-dependent DNA helicase RecQ [Erwinia pyrifoliae Ep1/96]
gi|387869602|ref|YP_005800972.1| ATP-dependent DNA helicase RecQ [Erwinia pyrifoliae DSM 12163]
gi|224962514|emb|CAX53969.1| ATP-dependent DNA helicase [Erwinia pyrifoliae Ep1/96]
gi|283476685|emb|CAY72514.1| ATP-dependent DNA helicase RecQ [Erwinia pyrifoliae DSM 12163]
Length = 610
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 167/325 (51%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS----VLKSK 62
VL+ F FRP Q I +L +D +++MPT Y VR V+
Sbjct: 15 QVLRDTFGYQQFRPGQQTIIQESLNGRDCLVVMPTGGGKSLCYQIPALVRQGLTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A +A A + T +++ + S +++LLY++PE+L
Sbjct: 75 ISLMKDQVDQLLANGVA-----AACLNSTQNREEQQNVMAGCRSGTVRLLYIAPERLMMD 129
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+F+ +L A +A+DE HC S WGHDFRP+Y L L+ PDVP++ LTATA
Sbjct: 130 -NFLEQLTHCNPA----MLAVDEAHCISQWGHDFRPEYGALGQLRQRLPDVPVMALTATA 184
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++LQ+ D ++ + F+RPN+ Y + + KP Q L + D R +
Sbjct: 185 DETTRNDIARLLQLNDPLIQISSFDRPNIRYTLVEKFKPTEQ--LLRYVQDQ-----RGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
GIIY S + ED L++RGL V AYHA +++ ++AFG
Sbjct: 238 CGIIYCNSRAKVEDTAARLQSRGLSVGAYHAGMDNAHRAHVQEAFQRDDLQIVVATVAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|298251484|ref|ZP_06975287.1| ATP-dependent DNA helicase RecQ [Ktedonobacter racemifer DSM 44963]
gi|297546076|gb|EFH79944.1| ATP-dependent DNA helicase RecQ [Ktedonobacter racemifer DSM 44963]
Length = 739
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/344 (34%), Positives = 168/344 (48%), Gaps = 72/344 (20%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLA 74
LK F F P Q I AL +DA +MPT +S++ QL+
Sbjct: 8 LKHYFGYEAFLPGQREVIEQALSGRDAFALMPTGAG-----KSLIY-----------QLS 51
Query: 75 AINIALLKKDAIIIMPTGKLLKKKKICLMTES------------------------SSLK 110
+ LL +III P L++ + L T LK
Sbjct: 52 GL---LLNGVSIIISPLIALMQDQVDRLKTNGIPATFLNSALSASERSQREREILQGKLK 108
Query: 111 LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170
L+YV+PE+L +++F+T L ++ + L IA+DE HC S WGHDFRP+Y+ L L+ +
Sbjct: 109 LVYVAPERLL-TQTFLTFLDEVQERVGLGLIAVDEAHCVSEWGHDFRPEYRQLGRLRVRY 167
Query: 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA 230
P VP + LTATAT +V D+ L++ D V A +NRPNL+YEVR K ++ EL
Sbjct: 168 PQVPAMALTATATERVQEDILTQLKLNDPYVEVASYNRPNLYYEVRQK---HQNTYSELV 224
Query: 231 DLMSRRFRNQSG---IIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------- 276
+ R QS IIY S K + + + L++ G+R YHA L ++
Sbjct: 225 QFL----REQSDAPVIIYCQSRKNVDTIADSLQHHGIRALPYHAGLSTDERTRNQDSFIH 280
Query: 277 -------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GI KP+VR VIH+ + KS+E +YQ S G
Sbjct: 281 DDVPVLVATIAFGMGIAKPDVRAVIHYDMPKSLEGYYQESGRAG 324
>gi|332291549|ref|YP_004430158.1| ATP-dependent DNA helicase RecQ [Krokinobacter sp. 4H-3-7-5]
gi|332169635|gb|AEE18890.1| ATP-dependent DNA helicase RecQ [Krokinobacter sp. 4H-3-7-5]
Length = 696
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/328 (33%), Positives = 160/328 (48%), Gaps = 45/328 (13%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRS 57
+ + S+LK+ F +FRPNQ I DA++IMPT S D V
Sbjct: 4 TQELHSLLKTHFGYDNFRPNQQEIIESVCRGDDALVIMPTGGGKSMCFQLPALALDGVAL 63
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPE 117
V+ L + + L A I A T L + +++ +S ++ L+YV+PE
Sbjct: 64 VISPLIALMKDQVDALRANGIR-----AAYYNSTQPLEETQQVLSDLQSGAIDLIYVAPE 118
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
L L A ++ IAIDE HC SSWGHDFRP Y L LK FP P++
Sbjct: 119 SL-------QMLDGALNAATISLIAIDEAHCISSWGHDFRPAYTQLGYLKRRFPQAPLIA 171
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATA D+ L I + + F+RPNL+ +VR P +++ D++ D +
Sbjct: 172 LTATADRSTQDDIADQLGISNAKKYVSSFDRPNLYLDVR--PGQKRN--DQILDFLEEH- 226
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSI 279
+SGIIY S K E L +L+ G + +AYHA + + +I
Sbjct: 227 PGESGIIYCLSRKSTESLAAKLQANGYKAAAYHAGMHAEQRSKVQEDFINDTTPIICATI 286
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
AFG+GIDK NVR+VIH+ + K++E +YQ
Sbjct: 287 AFGMGIDKSNVRWVIHYNMPKNLEGYYQ 314
>gi|256820777|ref|YP_003142056.1| ATP-dependent DNA helicase RecQ [Capnocytophaga ochracea DSM 7271]
gi|429746398|ref|ZP_19279750.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 380
str. F0488]
gi|429756068|ref|ZP_19288682.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 324
str. F0483]
gi|256582360|gb|ACU93495.1| ATP-dependent DNA helicase RecQ [Capnocytophaga ochracea DSM 7271]
gi|429166284|gb|EKY08277.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 380
str. F0488]
gi|429172170|gb|EKY13749.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 324
str. F0483]
Length = 729
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 175/334 (52%), Gaps = 52/334 (15%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSV 58
D + + LK F F+ +Q I + K++ +IMPT S + V
Sbjct: 6 DDLHNALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAIV 65
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS--LKLLYVSP 116
+ L NQ+ A+ + D+I + L K + +M + S+ KLLYV+P
Sbjct: 66 ISP---LIALMKNQVDAMR-GISSTDSIAHVLNSSLTKNEIREVMEDISAGKTKLLYVAP 121
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPI 175
E L K + K ++ +A+DE HC S WGHDFRP+Y+ + +I++ + ++PI
Sbjct: 122 ESLIKEE-----YANFLKTVPISFVAVDEAHCISEWGHDFRPEYRNIRTIIERLGSNIPI 176
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATAT KV D+ K L +++ V K+ FNRPNL+YEVR K +D AD++
Sbjct: 177 VALTATATPKVQEDILKNLGMQEANVFKSSFNRPNLYYEVRPKTK----NVD--ADII-- 228
Query: 236 RFRNQ----SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------------- 277
RF Q SGIIY S K+ EDL + L+ G+ YHA L++
Sbjct: 229 RFVKQNSKKSGIIYCLSRKKVEDLAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVD 288
Query: 278 ----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 289 VVVATIAFGMGIDKPDVRFVIHHDIPKSIESYYQ 322
>gi|359783323|ref|ZP_09286538.1| ATP-dependent DNA helicase RecQ [Pseudomonas psychrotolerans L19]
gi|359368750|gb|EHK69326.1| ATP-dependent DNA helicase RecQ [Pseudomonas psychrotolerans L19]
Length = 712
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/321 (34%), Positives = 163/321 (50%), Gaps = 41/321 (12%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-----LT 66
+LK F FR NQ I DA+++MPT S +V ++L+ L
Sbjct: 8 ILKDVFGYDAFRGNQARIIERVASGGDALVLMPTGGGKSLCYQVPALLRPGVAVVVSPLI 67
Query: 67 DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSK--S 124
+Q+A + + A+ TG+ +++ + E +KLLY++PE+L + +
Sbjct: 68 ALMDDQVATLLELGVSATALNSTMTGE--QQRAVAAQLERGEIKLLYLAPERLVQPRMLD 125
Query: 125 FMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATT 184
F+ +L +A AIDE HC S WGHDFRP+Y L L FP VP L LTATA +
Sbjct: 126 FLKRLP-------IALFAIDEAHCVSQWGHDFRPEYMQLGQLAEHFPGVPRLALTATADS 178
Query: 185 KVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGII 244
+ ++ L +E + F+RPN+FY + K + +K L LA+ R +GI+
Sbjct: 179 RTREEMASRLHLEQAERFLSSFDRPNIFYRIVPKESPRKQLLAFLAER-----RGDAGIV 233
Query: 245 YTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGID 286
Y S K+ E++ E+L N+G YHA L ++V +IAFG+GID
Sbjct: 234 YCMSRKKVEEVAEQLSNQGFPALPYHAGLPNDVRAANQKRFLNEEGLIMVATIAFGMGID 293
Query: 287 KPNVRFVIHHCLSKSMENFYQ 307
KPNVRFV H L KS+E +YQ
Sbjct: 294 KPNVRFVAHLDLPKSLEAYYQ 314
>gi|399927001|ref|ZP_10784359.1| ATP-dependent DNA helicase RecQ1 [Myroides injenensis M09-0166]
Length = 731
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 133/222 (59%), Gaps = 31/222 (13%)
Query: 106 SSSLKLLYVSPEKLAKSK--SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL 163
S KLLYV+PE L K + SF+ +++ L+ +AIDE HC S WGHDFRP+Y+ L
Sbjct: 111 SGVTKLLYVAPESLTKEEYVSFLKEVK-------LSFVAIDEAHCISEWGHDFRPEYRNL 163
Query: 164 SILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK 223
+ D+P++GLTATAT KV D+ K L+I D V KA FNRPNLFYE+R K K
Sbjct: 164 RNIIRQLGDIPMIGLTATATPKVQEDILKNLEIPDANVFKASFNRPNLFYEIRPKT---K 220
Query: 224 DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------ 277
+ ++ + ++ +SG+IY S K+ E++ L+ G+ YHA L++
Sbjct: 221 NIESDIIRFI-KQNAGKSGVIYCLSRKKVEEIANVLQVNGISAVPYHAGLDAKTRAKHQD 279
Query: 278 ------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VR+VIHH + KS+E++YQ
Sbjct: 280 MFLMEDVDVVVATIAFGMGIDKPDVRYVIHHDIPKSLESYYQ 321
>gi|427400403|ref|ZP_18891641.1| ATP-dependent DNA helicase RecQ [Massilia timonae CCUG 45783]
gi|425720677|gb|EKU83596.1| ATP-dependent DNA helicase RecQ [Massilia timonae CCUG 45783]
Length = 610
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/326 (32%), Positives = 158/326 (48%), Gaps = 42/326 (12%)
Query: 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVL 59
R VL++ F FR Q + DA+++MPT S D V V+
Sbjct: 12 RALHVLETVFGYPAFRGQQGEIVEHVASGGDALVLMPTGGGKSLCYQIPALLRDGVGVVV 71
Query: 60 KSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKL 119
L + + L + + A + T + +I + S + L+YV+PE+L
Sbjct: 72 SPLIALMQDQVDALEEVGVR-----AAFLNSTQTFEETLRIERLVRSGEIDLVYVAPERL 126
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
+ ++++A ++ AIDE HC S WGHDFRP+Y LSIL FP+VP + LT
Sbjct: 127 MTPRCL-----ELFEASRISLFAIDEAHCVSQWGHDFRPEYIRLSILHERFPNVPRIALT 181
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATA + ++ LQ+ED + F+RPN+ Y + K +K +L D ++
Sbjct: 182 ATADQQTRAEIAHRLQLEDARQFVSSFDRPNIRYSIVEKTTGRK----QLIDFITSEHPQ 237
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 281
SGI+Y S K+ E+ + L G+R AYHA +E V +IAF
Sbjct: 238 DSGIVYCLSRKKVEETADFLNEHGIRAMAYHAGMEHTVRAANQARFLREENIVMVATIAF 297
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GIDKP+VRFV H L KS+E +YQ
Sbjct: 298 GMGIDKPDVRFVCHLDLPKSIEGYYQ 323
>gi|393779596|ref|ZP_10367834.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 412
str. F0487]
gi|392609916|gb|EIW92711.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 412
str. F0487]
Length = 727
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 175/334 (52%), Gaps = 52/334 (15%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSV 58
D + + LK F F+ +Q I + K++ +IMPT S + V
Sbjct: 4 DDLHNALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAIV 63
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS--LKLLYVSP 116
+ L NQ+ A+ + D+I + L K + +M + S+ KLLYV+P
Sbjct: 64 ISP---LIALMKNQVDAMR-GISSTDSIAHVLNSSLTKNEIREVMEDISAGKTKLLYVAP 119
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPI 175
E L K + K ++ +A+DE HC S WGHDFRP+Y+ + +I++ + ++PI
Sbjct: 120 ESLIKEE-----YANFLKTVPISFVAVDEAHCISEWGHDFRPEYRNIRTIIERLGSNIPI 174
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATAT KV D+ K L +++ V K+ FNRPNL+YEVR K +D AD++
Sbjct: 175 VALTATATPKVQEDILKNLGMQEANVFKSSFNRPNLYYEVRPKTK----NVD--ADII-- 226
Query: 236 RFRNQ----SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------------- 277
RF Q SGIIY S K+ EDL + L+ G+ YHA L++
Sbjct: 227 RFVKQNSKKSGIIYCLSRKKVEDLAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVD 286
Query: 278 ----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 287 VVVATIAFGMGIDKPDVRFVIHHDIPKSIESYYQ 320
>gi|409397559|ref|ZP_11248426.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. Chol1]
gi|409118014|gb|EKM94439.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. Chol1]
Length = 708
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 110/329 (33%), Positives = 163/329 (49%), Gaps = 47/329 (14%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSV 58
D+ + +LK F FR NQ A I DA+++MPT S D + V
Sbjct: 3 DQAQRILKDVFGYDAFRGNQGAIIEQVAGGGDALVLMPTGGGKSLCYQVPALLRDGLAVV 62
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEK 118
+ L D + L + +A A+ + T ++++I + +KLLY++PE+
Sbjct: 63 VSPLIALMDDQVATLDELGVA-----AVALNSTLSADEQREIAERIRRNEIKLLYLAPER 117
Query: 119 LAKSK--SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
L + + +F+ +LQ +A AIDE HC S WGHDFRP+Y L L +FP VP +
Sbjct: 118 LVQPRMLAFLQRLQ-------IALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPGVPRI 170
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATA + ++ + L +E + F+RPN+FY + K +K L LA+
Sbjct: 171 ALTATADMRTREEIVQRLHLEHAERFLSSFDRPNIFYRIVPKEQPRKQLLGFLAER---- 226
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------S 278
R +GI+Y S K+ +DL L +G YHA L + + +
Sbjct: 227 -RGDAGIVYCMSRKKVDDLAAFLTEQGFPALPYHAGLPNELRAYHQKRFLNEEGLIMVAT 285
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
IAFG+GIDKPNVRFV H L KS+E +YQ
Sbjct: 286 IAFGMGIDKPNVRFVAHLDLPKSLEAYYQ 314
>gi|395010047|ref|ZP_10393465.1| ATP-dependent DNA helicase RecQ [Acidovorax sp. CF316]
gi|394311908|gb|EJE49195.1| ATP-dependent DNA helicase RecQ [Acidovorax sp. CF316]
Length = 620
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 160/324 (49%), Gaps = 36/324 (11%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS-----------DRVRSVLKS 61
+VL F FR Q + + DA+++MPT S + R V
Sbjct: 8 TVLHDVFGYEQFRGPQQDIVEHVIGGSDALVLMPTGGGKSLCYQVPAIVRQQQGRGVTIV 67
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAK 121
L +Q+ A++ A + DA + T + + + ++ ++ LLY +PE+L
Sbjct: 68 ISPLIALMHDQVGALHEAGV--DAAFLNSTLSFDEAQDVEFRLQTGAITLLYAAPERL-N 124
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
+ F+ L +Y G L+ AIDE HC S WGHDFRP+Y+ L++L + VP + LTAT
Sbjct: 125 TPRFLGLLDSLYNEGHLSLFAIDEAHCVSQWGHDFRPEYRALTVLHERYAGVPRIALTAT 184
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQS 241
A D+ + LQ+ED + + F+RPN+ Y + +KD +L + R ++
Sbjct: 185 ADDLTRADIIERLQLEDARLFISSFDRPNIRYTI----VEKKDATTQLLRFIEREHAGEA 240
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGL 283
G++Y S K E+L L + GL YHA L++ V +IAFG+
Sbjct: 241 GVVYCQSRKRVEELASTLSDAGLTALPYHAGLDTKVRQKNQDRFLREEGIVMVATIAFGM 300
Query: 284 GIDKPNVRFVIHHCLSKSMENFYQ 307
GIDKP+VRFV H + K++E +YQ
Sbjct: 301 GIDKPDVRFVAHVDMPKNIEGYYQ 324
>gi|340348782|ref|ZP_08671813.1| ATP-dependent helicase RecQ [Prevotella nigrescens ATCC 33563]
gi|339613206|gb|EGQ17991.1| ATP-dependent helicase RecQ [Prevotella nigrescens ATCC 33563]
Length = 727
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 113/320 (35%), Positives = 163/320 (50%), Gaps = 35/320 (10%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-----LTD 67
LK F F+ Q A I L D ++MPT S ++ S++ L
Sbjct: 11 LKHFFGFDKFKGAQEAIIRNVLAGNDTFVLMPTGGGKSLCYQLPSLIMEGTAIVISPLIA 70
Query: 68 FRPNQLAAINIALLKKDAIIIMPTGKLLKKK--KICLMTESSSLKLLYVSPEKLAKSKSF 125
NQ+ IN + ++D + L K + + ++ KLLYV+PE L K +S
Sbjct: 71 LMKNQVDVIN-GISEEDGVAHYLNSSLKKTEIDNVKADIQNGKTKLLYVAPESLNKEESI 129
Query: 126 MTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTK 185
+ +K ++ AIDE HC S WGHDFRP+Y+ + PI+ LTATAT K
Sbjct: 130 -----EFFKTVKVSFYAIDEAHCISEWGHDFRPEYRKIRQAIDQIGKAPIIALTATATDK 184
Query: 186 VMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIY 245
V D+ K L IEDC K+ FNRPNL+YEVR K ++D ++ + + +SGIIY
Sbjct: 185 VRTDIVKSLGIEDCAEFKSSFNRPNLYYEVRPK-KNEEDTNRQIIKFIKQNL-GKSGIIY 242
Query: 246 TTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDK 287
S K+ E+L L+ ++ + YHA L+S +IAFG+GIDK
Sbjct: 243 CLSRKKVEELAAVLQANDIKAAPYHAGLDSETRSKTQDDFLMENIDVIVATIAFGMGIDK 302
Query: 288 PNVRFVIHHCLSKSMENFYQ 307
P+VRFVIH+ + KS+E +YQ
Sbjct: 303 PDVRFVIHYDIPKSLEGYYQ 322
>gi|334121014|ref|ZP_08495090.1| ATP-dependent DNA helicase RecQ [Microcoleus vaginatus FGP-2]
gi|333455733|gb|EGK84376.1| ATP-dependent DNA helicase RecQ [Microcoleus vaginatus FGP-2]
Length = 731
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 109/326 (33%), Positives = 161/326 (49%), Gaps = 73/326 (22%)
Query: 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----------LLK-------K 97
+ LK F FRP Q + AL K+D +I+MPTG LLK
Sbjct: 15 LEQALKHFFGYDSFRPGQQEIVEAALQKRDMMIVMPTGGGKSLCFQLPALLKPGLTVVVS 74
Query: 98 KKICLMTE--------------------------------SSSLKLLYVSPEKLAKSKSF 125
I LM + +KLLYV+PE+L + F
Sbjct: 75 PLIALMQDQVEALQDNGIGATFLNSTLSSQETRSRETAILEGKIKLLYVAPERLLGER-F 133
Query: 126 MTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTK 185
+ L + ++ AIDE HC S WGHDFRP+Y+ + ++ +PD+PI+GLTATAT +
Sbjct: 134 LPFLDIVANKLGISAFAIDEAHCVSEWGHDFRPEYRQMQRVRDRYPDIPIMGLTATATER 193
Query: 186 VMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIY 245
V D+ + L + + + A FNRPNL+YEVR K K E+ ++ + + SGIIY
Sbjct: 194 VRQDIIQQLTLRNPYIHVASFNRPNLYYEVRPK---TKHSFAEVLQIIKK--KGGSGIIY 248
Query: 246 TTSIKECEDLREELRNRGLRVSAYHAKLE-----SN-------------VSIAFGLGIDK 287
S K+ +++ +L+ G++ YHA + +N +IAFG+GI+K
Sbjct: 249 CLSRKKVDEVAYKLQQSGIQALPYHAGMNDVDRATNQTRFIRDDVQVMVATIAFGMGINK 308
Query: 288 PNVRFVIHHCLSKSMENFYQVSIAFG 313
P+VRFVIH+ L K++E +YQ S G
Sbjct: 309 PDVRFVIHYDLPKNLEGYYQESGRAG 334
>gi|91772141|ref|YP_564833.1| ATP-dependent DNA helicase RecQ [Methanococcoides burtonii DSM
6242]
gi|91711156|gb|ABE51083.1| ATP dependent DNA helicase RecQ [Methanococcoides burtonii DSM
6242]
Length = 647
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 111/322 (34%), Positives = 156/322 (48%), Gaps = 43/322 (13%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKF 63
L+ F ++FRP Q IN L KKD ++MPT S D + V+
Sbjct: 4 TLQKYFGYSEFRPLQEDIINDVLNKKDVFVLMPTGGGKSICYQIPALIMDGLAVVVSPLI 63
Query: 64 NLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSK 123
+L + + L + I+ A + T + +KI ++ +LYV+PE+L
Sbjct: 64 SLMKDQVDGLVSNGIS-----AAYLNSTLSYNEVQKITRAIVEGNVDILYVAPERLC--- 115
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
M Q++ ++ AIDE HC S WGHDFRP+Y+ + LK +PDVP++ LTATAT
Sbjct: 116 --MKSTQELLSHVNVSLFAIDEAHCISEWGHDFRPEYRRMGFLKKKYPDVPVIALTATAT 173
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
KV + K L + V A F+R NL YE+R K D + L + R SGI
Sbjct: 174 AKVKENTIKQLDLVSPSVYVASFDRANLSYEIRPKNNTYGDMVSYL-----KGQRGNSGI 228
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGI 285
IY S K E + +L G YHA L ++AFG+GI
Sbjct: 229 IYCNSRKSVESVSTKLNREGFHALPYHAGLNDAKRQDNQERFIRDDVDIIVATVAFGMGI 288
Query: 286 DKPNVRFVIHHCLSKSMENFYQ 307
DKPNVRFVIH+ L K++E +YQ
Sbjct: 289 DKPNVRFVIHYDLPKNLEGYYQ 310
>gi|290477101|ref|YP_003470014.1| ATP-dependent DNA helicase [Xenorhabdus bovienii SS-2004]
gi|289176447|emb|CBJ83256.1| ATP-dependent DNA helicase [Xenorhabdus bovienii SS-2004]
Length = 608
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 170/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q I+ L +D +++MPT S + + V+
Sbjct: 15 QVLRKTFGYQQFRPGQQQVIDAVLDGRDCLVVMPTGGGKSLCYQIPALINNGLTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A + +A + T ++ I S+KLLY++PE+L +
Sbjct: 75 ISLMKDQVDQLRANGV-----EAECLNSTQNREQQVDIIQRCRQGSIKLLYIAPERLV-T 128
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+F+ +L + +A+DE HC S WGHDFRP+Y+ L + FP++P + LTATA
Sbjct: 129 DNFLDQLHDWHPV----LLAVDEAHCISQWGHDFRPEYRALGQFRRRFPELPFIALTATA 184
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L++ D ++ + F+RPN+ Y + + KP LD+L + R + +
Sbjct: 185 DKTTRQDITRLLELHDPLIHLSSFDRPNIRYTLVEKYKP------LDQLWSFV-RGQQGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S + E+ E L+ RGL V+ YHA L++N ++AFG
Sbjct: 238 SGIIYCNSRTKVEETAERLQKRGLSVAPYHAGLDNNQRAWVQDAFQRDDLQVVVATVAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|392421673|ref|YP_006458277.1| ATP-dependent DNA helicase RecQ [Pseudomonas stutzeri CCUG 29243]
gi|390983861|gb|AFM33854.1| ATP-dependent DNA helicase RecQ [Pseudomonas stutzeri CCUG 29243]
Length = 707
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 109/326 (33%), Positives = 167/326 (51%), Gaps = 41/326 (12%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-- 64
D+ + +LK F FR NQ A I DA+++MPT S +V ++L+
Sbjct: 3 DQAQRILKDVFGYDAFRGNQGAIIERVGSGGDALVLMPTGGGKSLCYQVPALLREGLAVV 62
Query: 65 ---LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAK 121
L +Q+A ++ L A+ + T ++++I S +K+LY++PE+L +
Sbjct: 63 VSPLIALMDDQVATLDE--LGVSAVALNSTLSADEQREIAERIRRSEIKMLYLAPERLVQ 120
Query: 122 SK--SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
+ +F+ +L+ +A AIDE HC S WGHDFRP+Y L L +FP VP + LT
Sbjct: 121 PRMLAFLQRLE-------IALFAIDEAHCVSQWGHDFRPEYMQLGQLAELFPGVPRIALT 173
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATA + ++ + L +E+ + F+RPN+FY + K +K L LA+ R
Sbjct: 174 ATADKRTREEIVQRLHLENAERFLSSFDRPNIFYRIVPKEQPRKQLLGFLAER-----RG 228
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 281
+GI+Y S K+ +DL L +G YHA L + + +IAF
Sbjct: 229 DAGIVYCMSRKKVDDLAAFLSEQGFPALPYHAGLPNELRAYHQKRFLNEEGLIMVATIAF 288
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GIDKPNVRFV H L KS+E +YQ
Sbjct: 289 GMGIDKPNVRFVAHLDLPKSLEAYYQ 314
>gi|354721299|ref|ZP_09035514.1| ATP-dependent DNA helicase RecQ [Enterobacter mori LMG 25706]
Length = 609
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 167/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL F FRP Q I L +D +++MPT S + + V+
Sbjct: 13 AKQVLHETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVLNGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T +++++ + ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQTREQQQEVMAGCRTGQIRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP++P + LTA
Sbjct: 128 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPELPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA LD+ ++L + D + + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRLDIVRLLGLNDPYIQVSSFDRPNIRYMLMEKFKP------LDQLLRYVQEQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L+NRG +AYHA LE+++ ++A
Sbjct: 236 GKSGIIYCNSRAKVEDTAARLQNRGFSAAAYHAGLENHIRADVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|399033938|ref|ZP_10732419.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. CF136]
gi|398067770|gb|EJL59249.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. CF136]
Length = 703
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 114/326 (34%), Positives = 155/326 (47%), Gaps = 85/326 (26%)
Query: 52 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC---------- 101
S+ + + LK F FRPNQ IN L +D + IMPTG K IC
Sbjct: 3 SEILHAKLKENFGFEKFRPNQETIINTILSGQDTLAIMPTGG---GKSICFQLPALVLPG 59
Query: 102 ----------LMTE--------------------------------SSSLKLLYVSPEKL 119
LM + S++ KL+Y++PE L
Sbjct: 60 ITIVISPLIALMKDQVDSLKANGISACYINSSQSSEEQQFYIENLKSNTFKLVYIAPESL 119
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
+ L ++ ++ IAIDE HC SSWGHDFRP Y L LK+ FP PIL LT
Sbjct: 120 -------SYLDVIFNELTISLIAIDEAHCISSWGHDFRPAYTNLGYLKSRFPSTPILALT 172
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATA D+ K L +++ A F+R NL EVR PA D + ++ D + + N
Sbjct: 173 ATADKATRTDITKQLNLKNPKTFVASFDRKNLSLEVR--PAL--DRVKQIIDFVENK-PN 227
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 281
+SGIIY S K E+L E+L+ G+ AYHA LE+ + +IAF
Sbjct: 228 ESGIIYCLSRKTTEELAEKLQKSGITAKAYHAGLENKLRAKTQDEFINDDCQVVCATIAF 287
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GIDK NVR+VIH+ L K++E +YQ
Sbjct: 288 GMGIDKSNVRWVIHYNLPKNIEGYYQ 313
>gi|373461301|ref|ZP_09553043.1| ATP-dependent DNA helicase RecQ [Prevotella maculosa OT 289]
gi|371952855|gb|EHO70688.1| ATP-dependent DNA helicase RecQ [Prevotella maculosa OT 289]
Length = 725
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 116/320 (36%), Positives = 162/320 (50%), Gaps = 37/320 (11%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-----LTD 67
LK F F+ +Q A I + D ++MPT S ++ S+L L
Sbjct: 11 LKHYFGFDKFKGDQEAIIQNLMSGHDTFVLMPTGGGKSLCYQLPSLLMEGTAIVISPLIA 70
Query: 68 FRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE--SSSLKLLYVSPEKLAKSKSF 125
NQ+ IN L ++ + L K +M + S KLLYV+PE L K +S
Sbjct: 71 LMKNQVDVIN-GLSEETGVAHYLNSSLNKAAVQQVMDDIRSGRTKLLYVAPESLNKEESI 129
Query: 126 MTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTK 185
K+ ++ AIDE HC S WGHDFRP+Y+ + D P++ LTATAT K
Sbjct: 130 -----DFLKSVKISFYAIDEAHCISEWGHDFRPEYRNIRPTINKIGDAPVIALTATATDK 184
Query: 186 VMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIY 245
V D++K L I D K+ FNRPNL+YEVR K D +D+ R+ +SGIIY
Sbjct: 185 VRSDIKKSLAIIDAKEFKSSFNRPNLYYEVRQKS----DEVDKQIIKFIRQHEGKSGIIY 240
Query: 246 TTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDK 287
S K+ E+L E L+ ++ + YHA L+S +IAFG+GIDK
Sbjct: 241 CLSRKKVEELSEVLKANEIKAAPYHAGLDSATRSQTQDDFLMERIDVIVATIAFGMGIDK 300
Query: 288 PNVRFVIHHCLSKSMENFYQ 307
P+VRFVIH+ + KS+E +YQ
Sbjct: 301 PDVRFVIHYDIPKSLEGYYQ 320
>gi|68249329|ref|YP_248441.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae 86-028NP]
gi|229844599|ref|ZP_04464738.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae 6P18H1]
gi|68057528|gb|AAX87781.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae 86-028NP]
gi|229812313|gb|EEP48003.1| ATP-dependent DNA helicase RecQ [Haemophilus influenzae 6P18H1]
Length = 619
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 117/325 (36%), Positives = 169/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
SVLKS F FR Q IN AL +DA+++M T S D + V+
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A I +A + + L +++++ S LKLLYVSPEK+ +
Sbjct: 78 ISLMKDQVDQLQANGI-----EADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKVM-T 131
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
SF + Y C IAIDE HC S WGHDFRP+Y L LK FPD PI+ LTATA
Sbjct: 132 NSFFQLIS--YSKVCF--IAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATA 187
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFY--EVRIKPAAQKDCLDELADLMSRRFRNQ 240
D+ + L +++ F+RPN+ Y E + KP +++L + + + +
Sbjct: 188 DYATQKDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKP------MEQLTRFVLAQ-KGK 240
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282
SGIIY S + E + E LRN+G+ +AYHA +E+ + +IAFG
Sbjct: 241 SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFG 300
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+K NVRFV H L +S+E++YQ
Sbjct: 301 MGINKSNVRFVAHFDLPRSIESYYQ 325
>gi|22124312|ref|NP_667735.1| ATP-dependent DNA helicase RecQ [Yersinia pestis KIM10+]
gi|45442967|ref|NP_994506.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Microtus
str. 91001]
gi|51594557|ref|YP_068748.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis IP
32953]
gi|108806187|ref|YP_650103.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Antiqua]
gi|108810297|ref|YP_646064.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Nepal516]
gi|145600700|ref|YP_001164776.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Pestoides F]
gi|153947607|ref|YP_001399215.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis IP
31758]
gi|153997111|ref|ZP_02022244.1| ATP-dependent DNA helicase [Yersinia pestis CA88-4125]
gi|162418857|ref|YP_001605148.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Angola]
gi|165926240|ref|ZP_02222072.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165939115|ref|ZP_02227666.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. IP275]
gi|166011675|ref|ZP_02232573.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166213635|ref|ZP_02239670.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167401854|ref|ZP_02307342.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167421077|ref|ZP_02312830.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167426281|ref|ZP_02318034.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|167469646|ref|ZP_02334350.1| ATP-dependent DNA helicase RecQ [Yersinia pestis FV-1]
gi|218930836|ref|YP_002348711.1| ATP-dependent DNA helicase RecQ [Yersinia pestis CO92]
gi|229837162|ref|ZP_04457327.1| ATP-dependent DNA helicase [Yersinia pestis Pestoides A]
gi|229839522|ref|ZP_04459681.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229900085|ref|ZP_04515222.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229900469|ref|ZP_04515598.1| ATP-dependent DNA helicase [Yersinia pestis Nepal516]
gi|270488824|ref|ZP_06205898.1| ATP-dependent DNA helicase RecQ [Yersinia pestis KIM D27]
gi|294505497|ref|YP_003569559.1| ATP-dependent DNA helicase [Yersinia pestis Z176003]
gi|384123966|ref|YP_005506586.1| ATP-dependent DNA helicase [Yersinia pestis D106004]
gi|384127827|ref|YP_005510441.1| ATP-dependent DNA helicase [Yersinia pestis D182038]
gi|384138308|ref|YP_005521010.1| ATP-dependent DNA helicase RecQ [Yersinia pestis A1122]
gi|384413065|ref|YP_005622427.1| ATP-dependent DNA helicase [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|420549046|ref|ZP_15046797.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-01]
gi|420554379|ref|ZP_15051553.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-02]
gi|420560006|ref|ZP_15056434.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-03]
gi|420565382|ref|ZP_15061272.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-04]
gi|420581390|ref|ZP_15075799.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-07]
gi|420586787|ref|ZP_15080681.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-08]
gi|420591869|ref|ZP_15085252.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-09]
gi|420597248|ref|ZP_15090090.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-10]
gi|420602944|ref|ZP_15095145.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-11]
gi|420608335|ref|ZP_15100039.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-12]
gi|420613725|ref|ZP_15104865.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-13]
gi|420619086|ref|ZP_15109540.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-14]
gi|420624397|ref|ZP_15114328.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-15]
gi|420629378|ref|ZP_15118846.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-16]
gi|420639815|ref|ZP_15128223.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-25]
gi|420645253|ref|ZP_15133196.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-29]
gi|420650581|ref|ZP_15137995.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-32]
gi|420661646|ref|ZP_15147913.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-36]
gi|420666997|ref|ZP_15152736.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-42]
gi|420671856|ref|ZP_15157169.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-45]
gi|420682761|ref|ZP_15167043.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-47]
gi|420688171|ref|ZP_15171857.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-48]
gi|420693441|ref|ZP_15176465.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-52]
gi|420699163|ref|ZP_15181511.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-53]
gi|420705063|ref|ZP_15186161.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-54]
gi|420710327|ref|ZP_15190893.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-55]
gi|420721372|ref|ZP_15200506.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-58]
gi|420726804|ref|ZP_15205306.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-59]
gi|420732302|ref|ZP_15210251.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-60]
gi|420737293|ref|ZP_15214760.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-61]
gi|420742774|ref|ZP_15219685.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-63]
gi|420753919|ref|ZP_15229361.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-65]
gi|420765089|ref|ZP_15238752.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-71]
gi|420780906|ref|ZP_15252870.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-88]
gi|420797138|ref|ZP_15267335.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-91]
gi|420802233|ref|ZP_15271911.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-92]
gi|420812973|ref|ZP_15281585.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-94]
gi|420818445|ref|ZP_15286557.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-95]
gi|420823785|ref|ZP_15291325.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-96]
gi|420828848|ref|ZP_15295891.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-98]
gi|420834430|ref|ZP_15300927.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-99]
gi|420839377|ref|ZP_15305399.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-100]
gi|420844579|ref|ZP_15310118.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-101]
gi|420850225|ref|ZP_15315189.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-102]
gi|420855965|ref|ZP_15320020.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-103]
gi|420861052|ref|ZP_15324517.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-113]
gi|421765358|ref|ZP_16202143.1| ATP-dependent DNA helicase RecQ [Yersinia pestis INS]
gi|21957085|gb|AAM83986.1|AE013640_5 ATP-dependent DNA helicase [Yersinia pestis KIM10+]
gi|45437834|gb|AAS63383.1| ATP-dependent DNA helicase [Yersinia pestis biovar Microtus str.
91001]
gi|51587839|emb|CAH19442.1| ATP-dependent DNA helicase [Yersinia pseudotuberculosis IP 32953]
gi|108773945|gb|ABG16464.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Nepal516]
gi|108778100|gb|ABG12158.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Antiqua]
gi|115349447|emb|CAL22420.1| ATP-dependent DNA helicase [Yersinia pestis CO92]
gi|145212396|gb|ABP41803.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Pestoides F]
gi|149289417|gb|EDM39495.1| ATP-dependent DNA helicase [Yersinia pestis CA88-4125]
gi|152959102|gb|ABS46563.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis IP
31758]
gi|162351672|gb|ABX85620.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Angola]
gi|165912888|gb|EDR31514.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. IP275]
gi|165921764|gb|EDR38961.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165989444|gb|EDR41745.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166205308|gb|EDR49788.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166961206|gb|EDR57227.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167048747|gb|EDR60155.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167054800|gb|EDR64604.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|229682488|gb|EEO78575.1| ATP-dependent DNA helicase [Yersinia pestis Nepal516]
gi|229686865|gb|EEO78944.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229695888|gb|EEO85935.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229706105|gb|EEO92114.1| ATP-dependent DNA helicase [Yersinia pestis Pestoides A]
gi|262363562|gb|ACY60283.1| ATP-dependent DNA helicase [Yersinia pestis D106004]
gi|262367491|gb|ACY64048.1| ATP-dependent DNA helicase [Yersinia pestis D182038]
gi|270337328|gb|EFA48105.1| ATP-dependent DNA helicase RecQ [Yersinia pestis KIM D27]
gi|294355956|gb|ADE66297.1| ATP-dependent DNA helicase [Yersinia pestis Z176003]
gi|320013569|gb|ADV97140.1| ATP-dependent DNA helicase [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|342853437|gb|AEL71990.1| ATP-dependent DNA helicase RecQ [Yersinia pestis A1122]
gi|391421158|gb|EIQ83878.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-01]
gi|391421371|gb|EIQ84073.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-02]
gi|391421448|gb|EIQ84143.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-03]
gi|391436188|gb|EIQ97169.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-04]
gi|391453252|gb|EIR12582.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-07]
gi|391453411|gb|EIR12729.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-08]
gi|391455260|gb|EIR14393.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-09]
gi|391469060|gb|EIR26879.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-10]
gi|391469818|gb|EIR27555.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-11]
gi|391471272|gb|EIR28850.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-12]
gi|391484954|gb|EIR41152.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-13]
gi|391486455|gb|EIR42485.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-15]
gi|391486548|gb|EIR42569.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-14]
gi|391501084|gb|EIR55520.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-16]
gi|391506158|gb|EIR60104.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-25]
gi|391517115|gb|EIR69950.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-29]
gi|391518917|gb|EIR71596.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-32]
gi|391531438|gb|EIR82932.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-36]
gi|391534305|gb|EIR85494.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-42]
gi|391536661|gb|EIR87623.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-45]
gi|391550077|gb|EIR99727.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-47]
gi|391550347|gb|EIR99969.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-48]
gi|391564613|gb|EIS12805.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-52]
gi|391566044|gb|EIS14081.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-53]
gi|391569386|gb|EIS16980.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-54]
gi|391579599|gb|EIS25700.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-55]
gi|391591637|gb|EIS36175.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-58]
gi|391595137|gb|EIS39212.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-60]
gi|391595868|gb|EIS39867.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-59]
gi|391609696|gb|EIS52066.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-61]
gi|391610048|gb|EIS52385.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-63]
gi|391623135|gb|EIS63973.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-65]
gi|391633409|gb|EIS72815.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-71]
gi|391648413|gb|EIS85930.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-88]
gi|391666018|gb|EIT01535.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-91]
gi|391675612|gb|EIT10109.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-92]
gi|391675850|gb|EIT10329.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-94]
gi|391689548|gb|EIT22669.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-95]
gi|391691498|gb|EIT24422.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-96]
gi|391693223|gb|EIT25990.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-98]
gi|391706602|gb|EIT38024.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-99]
gi|391707573|gb|EIT38908.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-100]
gi|391710357|gb|EIT41433.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-101]
gi|391722570|gb|EIT52360.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-102]
gi|391722697|gb|EIT52473.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-103]
gi|391723511|gb|EIT53184.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-113]
gi|411173338|gb|EKS43383.1| ATP-dependent DNA helicase RecQ [Yersinia pestis INS]
Length = 610
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 163/320 (50%), Gaps = 81/320 (25%)
Query: 57 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG------------------------ 92
VL+ F FRP Q IN L +D +++MPTG
Sbjct: 15 QVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSPL 74
Query: 93 ---------KLL--------------KKKKICLMT--ESSSLKLLYVSPEKLAKSKSFMT 127
+LL +++++ +M S +KLLY++PE+L +SF+
Sbjct: 75 ISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLYIAPERLVM-ESFLD 133
Query: 128 KLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVM 187
+L + A +A+DE HC S WGHDFRP+Y+ L LK FPD+P++ LTATA
Sbjct: 134 QLYQWRPA----LLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADEATR 189
Query: 188 LDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQSGIIY 245
D+ ++L ++ ++ + F+RPN+ Y + + KP LD+L + + R +SGIIY
Sbjct: 190 GDIVRLLNLDQPLIQISSFDRPNIRYTLVEKFKP------LDQLWRFVQDQ-RGKSGIIY 242
Query: 246 TTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDK 287
S + ED L++RGL V+AYHA L++ ++AFG+GI+K
Sbjct: 243 CNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGINK 302
Query: 288 PNVRFVIHHCLSKSMENFYQ 307
PNVRFV+H + +++E++YQ
Sbjct: 303 PNVRFVVHFDIPRTIESYYQ 322
>gi|420149707|ref|ZP_14656877.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 335
str. F0486]
gi|394753188|gb|EJF36768.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 335
str. F0486]
Length = 732
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 175/334 (52%), Gaps = 52/334 (15%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSV 58
D + + LK F F+ +Q I + K++ +IMPT S + V
Sbjct: 9 DDLHNALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAIV 68
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS--LKLLYVSP 116
+ L NQ+ A+ + D+I + L K + +M + S+ KLLYV+P
Sbjct: 69 ISP---LIALMKNQVDAMR-GISSTDSIAHVLNSSLTKNEIREVMEDISAGKTKLLYVAP 124
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPI 175
E L K + K ++ +A+DE HC S WGHDFRP+Y+ + +I++ + ++PI
Sbjct: 125 ESLIKEE-----YANFLKTVPISFVAVDEAHCISEWGHDFRPEYRNIRTIIERLGSNIPI 179
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATAT KV D+ K L +++ V K+ FNRPNL+YEVR K +D AD++
Sbjct: 180 VALTATATPKVQEDILKNLGMQEANVFKSSFNRPNLYYEVRPKTK----NVD--ADII-- 231
Query: 236 RFRNQ----SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------------- 277
RF Q SGIIY S K+ EDL + L+ G+ YHA L++
Sbjct: 232 RFVKQNSKKSGIIYCLSRKKVEDLAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVD 291
Query: 278 ----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 292 VVVATIAFGMGIDKPDVRFVIHHDIPKSIESYYQ 325
>gi|291614340|ref|YP_003524497.1| ATP-dependent DNA helicase RecQ [Sideroxydans lithotrophicus ES-1]
gi|291584452|gb|ADE12110.1| ATP-dependent DNA helicase RecQ [Sideroxydans lithotrophicus ES-1]
Length = 614
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 107/343 (31%), Positives = 172/343 (50%), Gaps = 45/343 (13%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN---- 64
+ +L+ F FR Q A + + DA+++MPT S ++ ++++
Sbjct: 6 AQQILRDTFGYASFRGAQQAIVEHVVAGGDALVLMPTGGGKSLCYQIPALMRKGVGIIVS 65
Query: 65 -LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSK 123
L +Q+ A+ L A + + + + +++ LKLLYV+PE+L ++
Sbjct: 66 PLIALMQDQVDALK--QLGVSAAFLNSSLEAEEAREVSRQLMRCELKLLYVAPERLL-TE 122
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
F+ L+++ + +A AIDE HC S WGHDFRP+Y+ L++L FP VP + LTATA
Sbjct: 123 GFLNLLERLNQDNNIALFAIDEAHCVSQWGHDFRPEYRGLTVLHERFPSVPRIALTATAD 182
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
+V + L +E + F+RPN+ Y V +K A+K +L D + + +GI
Sbjct: 183 APTRSEVVERLSLEQAEQFVSSFDRPNIRYRVTLKDNARK----QLQDFLETEHPDDAGI 238
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGI 285
+Y S K+ E+ L+ +G YHA L++ V ++AFG+GI
Sbjct: 239 VYCLSRKKVEETAAWLKEQGWDALPYHAGLDAAVRSKNQKKFLREEGVIMVATVAFGMGI 298
Query: 286 DKPNVRFVIHHCLSKSMENFYQVS-------------IAFGLG 315
DKPNVRFV H L KSME +YQ + +A+GLG
Sbjct: 299 DKPNVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLG 341
>gi|392591898|gb|EIW81225.1| ATP-dependent DNA helicase [Coniophora puteana RWD-64-598 SS2]
Length = 777
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 117/346 (33%), Positives = 167/346 (48%), Gaps = 65/346 (18%)
Query: 20 NLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRSVLKSKFNLTDFRPN-- 71
N F+ Q + A+ KD ++ PT YP L S F RPN
Sbjct: 8 NAKGFKGKQREIVQAAISGKDVFVLAPTGMGKVAVYP--------LLSAF----MRPNVV 55
Query: 72 ---------QLAAINIALLKKD---AIIIMPTGKLLKKKKIC--LMTESSSLKLLYVSPE 117
++ +A L++ A+ + +++KI L+ +LLY +PE
Sbjct: 56 APELVLSASRIGRKEVASLQRKYIPAMALTSDSTPEERQKIIDDLVYGDPQNRLLYTTPE 115
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
KL +K LQ +Y L R+ +DE HC S WGHDFR +Y+ L + FP+VP++
Sbjct: 116 KLC-TKDITRLLQVVYDDHKLNRLVVDEAHCISEWGHDFRAEYRKLGHFRDRFPEVPVMA 174
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKA--PFNRPNLFYEVRIKPAAQ-----KDCLDELA 230
LTATAT V D+ + L++++ + KA PFNR NLFYEVR K + LD +
Sbjct: 175 LTATATPSVQRDIIRSLRMDEQNMYKAVHPFNRDNLFYEVRYKSGVDPLSRMAEVLDFIT 234
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------- 277
L RR R SGIIY + C+DL LR +GL YH ++SNV
Sbjct: 235 TLYRRRERPSSGIIYCRTRATCDDLSAFLRGKGLSARPYHRGIKSNVLDTTLKQWENGGN 294
Query: 278 ----------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDK +VR+VIH+ L S+E +YQ + G
Sbjct: 295 GEGGVDVVCATIAFGMGIDKADVRYVIHYDLPHSLEGYYQETGRAG 340
>gi|262040869|ref|ZP_06014095.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259041758|gb|EEW42803.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 608
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 168/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q I AL +D +++MPT S + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQETIIETALEGRDCLVVMPTGGGKSLCYQVPALVMGGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T + +++ S ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQLQEVMAGCRSGQVRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L LA +A+DE HC S WGHDFRP+Y L L+ P +P + LTA
Sbjct: 128 LD-NFLEHLANWN----LAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPQIPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRYMLMEKFKP------LDQLMRYVQDQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE++V ++A
Sbjct: 236 GKSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENDVRAEVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|334126137|ref|ZP_08500116.1| ATP-dependent helicase RecQ [Enterobacter hormaechei ATCC 49162]
gi|333385797|gb|EGK57023.1| ATP-dependent helicase RecQ [Enterobacter hormaechei ATCC 49162]
Length = 630
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 167/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL F FRP Q I L +D +++MPT S + + V+
Sbjct: 34 AKQVLHETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVLNGLTVVVS 93
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T +++++ + ++LLY++PE+L
Sbjct: 94 PLISLMKDQVDQLLANGVA-----AACLNSTQTREQQQEVMAGCRTGQIRLLYIAPERLM 148
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP++P + LTA
Sbjct: 149 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPELPFMALTA 203
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA LD+ ++L + D + + F+RPN+ Y + + KP LD+L + + R
Sbjct: 204 TADDTTRLDIVRLLGLNDPYIQVSSFDRPNIRYMLMEKFKP------LDQLLRYVQEQ-R 256
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L+NRG +AYHA LE+++ ++A
Sbjct: 257 GKSGIIYCNSRAKVEDTAARLQNRGFSAAAYHAGLENHIRADVQEKFQRDDLQIVVATVA 316
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 317 FGMGINKPNVRFVVHFDIPRNIESYYQ 343
>gi|365846070|ref|ZP_09386576.1| ATP-dependent DNA helicase RecQ [Yokenella regensburgei ATCC 43003]
gi|364574417|gb|EHM51877.1| ATP-dependent DNA helicase RecQ [Yokenella regensburgei ATCC 43003]
Length = 623
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 168/326 (51%), Gaps = 47/326 (14%)
Query: 12 RSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKS 61
+ VL+ F FRP Q I L +D +++MPT S D + V+
Sbjct: 28 KQVLQETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQIPALVLDGLTVVVSP 87
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAK 121
+L + +QL A +A A + T +++++ + ++LLY++PE+L
Sbjct: 88 LISLMKDQVDQLLANGVA-----AACLNSTQTREQQQEVMAGCRTGKIRLLYIAPERLML 142
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTAT
Sbjct: 143 D-NFLDNLSHWNPV----MLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTAT 197
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRN 239
A LD+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 198 ADDTTRLDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-RG 250
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 281
+SGIIY S + ED L++RG+ AYHA LE+++ ++AF
Sbjct: 251 KSGIIYCNSRAKVEDTAARLQSRGISAGAYHAGLENHIRAEVQEKFQRDDLQIVVATVAF 310
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GI+KPNVRFV+H + +++E++YQ
Sbjct: 311 GMGINKPNVRFVVHFDIPRNIESYYQ 336
>gi|333894935|ref|YP_004468810.1| ATP-dependent DNA helicase [Alteromonas sp. SN2]
gi|332994953|gb|AEF05008.1| ATP-dependent DNA helicase [Alteromonas sp. SN2]
Length = 612
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 163/324 (50%), Gaps = 44/324 (13%)
Query: 12 RSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS----VLKS 61
+VLK+ F +FR Q I+ DA++++PT Y +R+ V+
Sbjct: 21 ENVLKNVFGYDEFREGQGDVIHHVCHGGDALVLLPTGGGKSMCYQIPALIRAGTGIVVSP 80
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAK 121
+L + QL A+ + A + T + I S+ L LLYVSPE+L
Sbjct: 81 LISLMQDQVEQLKALGVK-----AAYLNSTLSQEDQASISEQMVSNQLDLLYVSPERL-- 133
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
Q+ + +A AIDE HC S WGHDFR DY+ L +K FPD+P++GLTAT
Sbjct: 134 ---LQFGFQQTLRTTEVALFAIDEAHCVSHWGHDFRHDYRALGQIKARFPDIPVIGLTAT 190
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQS 241
A D+ LQ+ D +V K F+RPN+ Y V K A + + + + + S
Sbjct: 191 ADIATQSDILTQLQLNDPLVYKGSFDRPNIRYRVMSKYKAFEQVVTYV------KQQEGS 244
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGL 283
GIIY S + +DL +L +G R +AYHA ++++ ++AFG+
Sbjct: 245 GIIYCNSRAKVDDLHAKLFKQGFRCAAYHAGMDADERELVQRQFLNDKIDIVVATVAFGM 304
Query: 284 GIDKPNVRFVIHHCLSKSMENFYQ 307
GI+K NVR+V+HH + +S+E++YQ
Sbjct: 305 GINKSNVRYVVHHDVPRSVESYYQ 328
>gi|260062261|ref|YP_003195341.1| ATP-dependent DNA helicase [Robiginitalea biformata HTCC2501]
gi|88783823|gb|EAR14994.1| putative ATP-dependent DNA helicase [Robiginitalea biformata
HTCC2501]
Length = 733
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 117/329 (35%), Positives = 172/329 (52%), Gaps = 46/329 (13%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DRVRSVLKS 61
+++ LK F + F+ Q I + +D +IMPT S +++ S
Sbjct: 8 LKASLKKYFGFSQFKGLQEDVIKNIVQGRDTFVIMPTGGGKSLCYQLPALIGEGTAIVVS 67
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE--SSSLKLLYVSPEKL 119
L NQ+ AI + D + + L K + + + S KLLYV+PE L
Sbjct: 68 P--LIALMKNQVDAIR-GVSDNDGVAHVLNSSLTKGEVKAVKEDITSGVTKLLYVAPESL 124
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGL 178
K + ++ LQ + L+ +AIDE HC S WGHDFRP+Y+ L SI+ + D+PI+ L
Sbjct: 125 TKEE-YVDFLQGV----TLSFVAIDEAHCISEWGHDFRPEYRNLRSIIDRLGDDIPIIAL 179
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS--RR 236
TATAT KV D+ K L I + V KA FNRPNL+YEV+ K +D AD++ ++
Sbjct: 180 TATATPKVQEDILKNLGIPEAEVFKASFNRPNLYYEVQPKTK----NVD--ADIIRFVKK 233
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------S 278
+SGIIY S K E+L + L+ G+ YHA ++ +
Sbjct: 234 NAGKSGIIYCLSRKRVEELAQVLQVNGVSAVPYHAGFDAKTRSRYQDMFLMEEVDVVVAT 293
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
IAFG+GIDKP+VR+VIHH + KS+E++YQ
Sbjct: 294 IAFGMGIDKPDVRYVIHHDIPKSIESYYQ 322
>gi|429083282|ref|ZP_19146326.1| ATP-dependent DNA helicase RecQ [Cronobacter condimenti 1330]
gi|426547898|emb|CCJ72367.1| ATP-dependent DNA helicase RecQ [Cronobacter condimenti 1330]
Length = 609
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 170/333 (51%), Gaps = 47/333 (14%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS- 57
Y + VL+ F FRP Q I+ L +D +++MPT Y V++
Sbjct: 7 YSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKTG 66
Query: 58 ---VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYV 114
V+ +L + +QL A +A A + T +++ + + ++LLY+
Sbjct: 67 LTVVVSPLISLMKDQVDQLLANGVA-----AACLNSTQSRDEQQAVMAGCRTGQVRLLYI 121
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PE+L +F+ L L +A+DE HC S WGHDFRP+Y L L+ FP VP
Sbjct: 122 APERLMMD-NFIDNLTYWN----LTMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVP 176
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADL 232
+ LTATA D+ ++L ++D ++ + F+RPN+ Y + + KP LD+L
Sbjct: 177 FMALTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKP------LDQLMRY 230
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------- 277
+ + R +SGIIY S + ED L++RG+ +AYHA LE V
Sbjct: 231 VQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQI 289
Query: 278 ---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 290 VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|170593171|ref|XP_001901338.1| Bloom's syndrome protein homolog [Brugia malayi]
gi|158591405|gb|EDP30018.1| Bloom's syndrome protein homolog, putative [Brugia malayi]
Length = 1054
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 112/321 (34%), Positives = 156/321 (48%), Gaps = 74/321 (23%)
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK------------------------ 93
+LKS+F FR Q AI ALL D I+MPTG
Sbjct: 288 ILKSRFGFNQFRHRQKHAIIAALLGYDCFILMPTGAGKSLCYQLPAILSKGITVVISPLK 347
Query: 94 --------LLKKKKIC------------------LMTESS-SLKLLYVSPEKLAKSKSFM 126
+K+ +IC ++ ESS +KLLYV+PEK+A S+
Sbjct: 348 SLIEDQKMKMKELEICCYALTSELNQAESDRIYSMLNESSPKIKLLYVTPEKIAASEKLN 407
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF--PDVPILGLTATATT 184
+++ L R +DE HC S WGHDFRPDY L L+ MF P VP++ LTATAT
Sbjct: 408 NMFFSLHRRDLLTRFVVDEAHCVSQWGHDFRPDYTKLQSLRRMFTNPVVPVMALTATATP 467
Query: 185 KVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGII 244
K++ D++ L I+ + + F R NL Y+V K L + D M + ++SGI+
Sbjct: 468 KIVTDIRVHLAIQQSKLFISSFVRTNLKYDVIAKGPRS---LVRVMDRMKILYPDKSGIV 524
Query: 245 YTTSIKECEDLREELRNRGLRVSAYHAKL---------------ESNV---SIAFGLGID 286
Y S ++CE + + L N + YHA L + NV +IAFG+GID
Sbjct: 525 YCLSRRDCELVSKMLENHAISSEVYHAGLSDKKRLEVQTKWISNQVNVICATIAFGMGID 584
Query: 287 KPNVRFVIHHCLSKSMENFYQ 307
KP+VRFVIH + KS+E +YQ
Sbjct: 585 KPDVRFVIHFSMPKSIEAYYQ 605
>gi|407698409|ref|YP_006823196.1| ATP-dependent DNA helicase [Alteromonas macleodii str. 'Black Sea
11']
gi|407247556|gb|AFT76741.1| ATP-dependent DNA helicase [Alteromonas macleodii str. 'Black Sea
11']
Length = 613
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 108/333 (32%), Positives = 170/333 (51%), Gaps = 47/333 (14%)
Query: 6 PWSDRVRS---VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVR 56
P + RV++ VLK F FR Q I+ KDA++++PT Y VR
Sbjct: 12 PETQRVKTPETVLKDVFGYDAFRDGQGEVIHQVCEGKDALVLLPTGGGKSLCYQIPALVR 71
Query: 57 S----VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLL 112
V+ +L + QL A+ + +A + T + ++ +I ++ L LL
Sbjct: 72 QGTAIVVSPLISLMQDQVEQLKALGV-----NAAYLNSTLEADEQARINDALQAGKLDLL 126
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
YVSPE+L Q+ +A AIDE HC S WGHDFR DY+ L +K+ FP
Sbjct: 127 YVSPERL-----MQYYFQQSLAHADIALFAIDEAHCVSHWGHDFRQDYRALGQIKSRFPS 181
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
+P++GLTATA + D+ L + + +V K F+RPN+ Y V K A D++
Sbjct: 182 IPVIGLTATADSATQADILTQLNLNEPLVYKGSFDRPNIRYRVMSKYKA----FDQVVAY 237
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
+ + + SGIIY S + +DL +L +G R +AYHA ++++
Sbjct: 238 VKQ--QEGSGIIYCNSRAKVDDLHAKLFRQGFRCAAYHAGMDNDERELVQRQFLNDKIDI 295
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+K NVR+V+HH + +S+E++YQ
Sbjct: 296 VVATVAFGMGINKSNVRYVVHHDVPRSVESYYQ 328
>gi|188532380|ref|YP_001906177.1| ATP-dependent DNA helicase RecQ [Erwinia tasmaniensis Et1/99]
gi|188027422|emb|CAO95269.1| ATP-dependent DNA helicase [Erwinia tasmaniensis Et1/99]
Length = 610
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 167/325 (51%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS----VLKSK 62
VL+ F FRP Q I +L +D +++MPT Y VR V+
Sbjct: 15 QVLRDTFGYQQFRPGQQTIIQESLNGRDCLVVMPTGGGKSLCYQIPALVRQGLTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A +A A + T +++ + S ++LLY++PE+L
Sbjct: 75 ISLMKDQVDQLLANGVA-----AACLNSTQNREEQQNVMAGCRSGKVRLLYIAPERLMMD 129
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+F+ +L A +A+DE HC S WGHDFRP+Y L L+ PDVP++ LTATA
Sbjct: 130 -NFLEQLTHCNPA----MLAVDEAHCISQWGHDFRPEYGALGQLRQRLPDVPVMALTATA 184
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++LQ++D ++ + F+RPN+ Y + + KP Q L + D R +
Sbjct: 185 DDTTRNDIARLLQLDDPLIQVSSFDRPNIRYTLVEKFKPTEQ--LLRYVQDQ-----RGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES------------------NVSIAFG 282
GIIY S + ED L++RGL V AYHA +++ ++AFG
Sbjct: 238 CGIIYCNSRAKVEDTAARLQSRGLSVGAYHAGMDNVHRARVQEAFQRDDLQIVVATVAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|401765702|ref|YP_006580709.1| ATP-dependent DNA helicase RecQ [Enterobacter cloacae subsp.
cloacae ENHKU01]
gi|400177236|gb|AFP72085.1| ATP-dependent DNA helicase RecQ [Enterobacter cloacae subsp.
cloacae ENHKU01]
Length = 609
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 167/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL F FRP Q I L +D +++MPT S + + V+
Sbjct: 13 AKQVLHETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVLNGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T +++++ + ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQTREQQQEVMAGCRTGQVRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP++P + LTA
Sbjct: 128 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPELPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA LD+ ++L + D + + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRLDIVRLLGLNDPYIQVSSFDRPNIRYMLMEKFKP------LDQLLRYVQEQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L+NRG +AYHA LE+++ ++A
Sbjct: 236 GKSGIIYCNSRAKVEDTAARLQNRGFSAAAYHAGLENHIRADVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|359458485|ref|ZP_09247048.1| ATP-dependent DNA helicase RecQ [Acaryochloris sp. CCMEE 5410]
Length = 739
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 108/328 (32%), Positives = 156/328 (47%), Gaps = 76/328 (23%)
Query: 50 PWSD--RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
P SD + LK F FR Q I AL ++D +++MPTG
Sbjct: 8 PGSDFKSLEEALKHYFGYDQFRVGQRPVIEAALQQQDLMVVMPTGGGKSLCFQLPGLLLP 67
Query: 94 ---LLKKKKICLMTE--------------------------------SSSLKLLYVSPEK 118
++ I LM + S +KLLYV+PE+
Sbjct: 68 GLTVVISPLIALMQDQVTTLQVNDIPATFLNSSIDAATARQRISEIYSGKIKLLYVAPER 127
Query: 119 LAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGL 178
L +SF+ L ++ LA A+DE HC S WGHDFRP+Y+ L+ ++ + VP+ L
Sbjct: 128 LLH-ESFLNLLDQVQAQVGLAAFAVDEAHCVSEWGHDFRPEYRRLAEVRQRYAQVPVYTL 186
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKP-AAQKDCLDELADLMSRRF 237
TATAT +V D+ + LQ+ V A FNRPNL+YEVR K A D E+ R+
Sbjct: 187 TATATERVRQDIIQQLQLRQPFVHVASFNRPNLYYEVRPKSRQAYADLYREI-----RQH 241
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSI 279
SGI+Y S +E ++ L+ G+R YHA + + ++
Sbjct: 242 GQDSGIVYCLSRREVNEISARLQGDGIRALPYHAGMSDSARTLNQERFIRDDVQVMVATV 301
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
AFG+GIDKP+VRFVIH+ L +++E +YQ
Sbjct: 302 AFGMGIDKPDVRFVIHYNLPRNIEGYYQ 329
>gi|374598547|ref|ZP_09671549.1| ATP-dependent DNA helicase, RecQ family [Myroides odoratus DSM
2801]
gi|423323213|ref|ZP_17301055.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CIP 103059]
gi|373910017|gb|EHQ41866.1| ATP-dependent DNA helicase, RecQ family [Myroides odoratus DSM
2801]
gi|404609764|gb|EKB09128.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CIP 103059]
Length = 731
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 133/216 (61%), Gaps = 27/216 (12%)
Query: 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169
KLLYV+PE L K + ++ LQ++ L+ +AIDE HC S WGHDFRP+Y+ L +
Sbjct: 115 KLLYVAPESLTKEE-YVNFLQEV----KLSFVAIDEAHCISEWGHDFRPEYRNLRNIIRQ 169
Query: 170 FPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDEL 229
D+PI+GLTATAT KV D+ K L+I + V KA FNRPNL+YE++ K K+ ++
Sbjct: 170 LGDIPIIGLTATATPKVQEDILKNLEIPNANVFKASFNRPNLYYEIKPKT---KNIESDI 226
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------ 277
+ +R + +SG+IY S K+ E++ L+ G+ YHA L++
Sbjct: 227 IRFIKQR-KGKSGVIYCLSRKKVEEIANVLQVNGISAVPYHAGLDAKTRAKHQDMFLMED 285
Query: 278 ------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VR+VIHH + KS+E++YQ
Sbjct: 286 VDVVVATIAFGMGIDKPDVRYVIHHDIPKSLESYYQ 321
>gi|383934161|ref|ZP_09987603.1| ATP-dependent DNA helicase RecQ [Rheinheimera nanhaiensis E407-8]
gi|383704617|dbj|GAB57694.1| ATP-dependent DNA helicase RecQ [Rheinheimera nanhaiensis E407-8]
Length = 604
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 102/319 (31%), Positives = 167/319 (52%), Gaps = 37/319 (11%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDFRPN 71
+LK F ++FR Q A I AL +D+ ++MPT S ++ ++L + +
Sbjct: 8 LLKQHFGYSEFRSGQHAVIEAALAGQDSFVLMPTGGGKSLCYQLPALLLPQVTIVVSPLM 67
Query: 72 QLAAINIALLKKDAIIIMPTGKLLKKKKICLM---TESSSLKLLYVSPEKLAKSKSFMTK 128
L + LK + I L ++++ + +LKLLYV+PE+L + + F+ +
Sbjct: 68 SLMKDQVDALKANGIAAEFVNSSLSREQVLQVFARLRQGTLKLLYVAPERLLQPQ-FLDR 126
Query: 129 LQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVML 188
LQ + ++ AIDE HC S WGHDFRPDY L++LK F VP++ LTATA +
Sbjct: 127 LQDV----GVSLFAIDEAHCISQWGHDFRPDYMALALLKQRFASVPVMALTATADSATRQ 182
Query: 189 DVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQSGIIYT 246
D+ + L ++ V F+RPN+ Y V + +P Q + D SGI+Y
Sbjct: 183 DILQQLNLQQPYVHLGSFDRPNIRYTVQEKFRPTEQLISYLQQQD-------GASGIVYC 235
Query: 247 TSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDKP 288
+S ++ ++L E+L+ RG +AYHA L S+ ++AFG+G++K
Sbjct: 236 SSRRKVDELTEQLKQRGFNAAAYHAGLSSDERNQVQDAFKRDDYQLIVATVAFGMGVNKS 295
Query: 289 NVRFVIHHCLSKSMENFYQ 307
N+RFV+H L +++E +YQ
Sbjct: 296 NIRFVVHFELPRTIEAYYQ 314
>gi|268680155|ref|YP_003304586.1| ATP-dependent DNA helicase RecQ [Sulfurospirillum deleyianum DSM
6946]
gi|268618186|gb|ACZ12551.1| ATP-dependent DNA helicase RecQ [Sulfurospirillum deleyianum DSM
6946]
Length = 596
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 117/321 (36%), Positives = 168/321 (52%), Gaps = 38/321 (11%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRSVLKSKFN-L 65
++L+ F FR NQ A+N L KD ++I+PT Y V L + L
Sbjct: 6 NILQRVFGHHHFRANQEEAVNAILAHKDLMMILPTGAGKSLCYQLPSLVMEGLSVVISPL 65
Query: 66 TDFRPNQLAAINIALLKKDAIIIMPTGKLLKKK-KICLMTESSSLKLLYVSPEKLAKSKS 124
+Q+ A++ +K I M + + +++ + C E LKLLYV+PE+L K +S
Sbjct: 66 LALMHDQITALSAFGIKASMISSMQSPQEIQESMQACRKGE---LKLLYVAPERL-KGES 121
Query: 125 FMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATT 184
F+ LQ + C+ IDE HC S WGH+FR DY+ L LK FP PI TATAT
Sbjct: 122 FLHFLQTL----CINFFVIDEAHCVSEWGHEFREDYRQLFRLKHYFPKTPIAAFTATATK 177
Query: 185 KVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGII 244
V D+ + L + + ++I+A R NL + + ++ L L+ L R F+N+SGII
Sbjct: 178 IVEHDILQQLSLINPLIIRAKVERENLTIKADYRNGNGREQL--LSFL--RAFQNESGII 233
Query: 245 YTTSIKECEDLREELRNRGLRVSAYHAKL---ESN---------------VSIAFGLGID 286
YT + KE E L L+ +RV AYHA L E N ++AFG+GID
Sbjct: 234 YTLTRKETESLALFLQGYSMRVRAYHAGLCTEEKNETYHAFLNDEIDVVVATVAFGMGID 293
Query: 287 KPNVRFVIHHCLSKSMENFYQ 307
K N+RFV H L K++EN+YQ
Sbjct: 294 KSNIRFVAHMSLPKTLENYYQ 314
>gi|126662148|ref|ZP_01733147.1| ATP-dependent DNA helicase recQ [Flavobacteria bacterium BAL38]
gi|126625527|gb|EAZ96216.1| ATP-dependent DNA helicase recQ [Flavobacteria bacterium BAL38]
Length = 731
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 164/341 (48%), Gaps = 79/341 (23%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------------------- 52
LK F + F+ Q + + + +IMPT S
Sbjct: 12 LKKYFGFSQFKGLQEQVVKSIITGNNTFVIMPTGGGKSLCYQLPALVLDGTAIVVSPLIA 71
Query: 53 ------DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTES 106
D +RS L S++ + + L IA +KKD S
Sbjct: 72 LMKNQVDAIRS-LSSEYGIAHVLNSSLNKTEIANVKKDIT-------------------S 111
Query: 107 SSLKLLYVSPEKLAKSK--SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLS 164
KLLYV+PE L K + F+ + ++ +AIDE HC S WGHDFRP+Y+ L
Sbjct: 112 GITKLLYVAPESLTKEEYIEFLNSV-------PISFVAIDEAHCISEWGHDFRPEYRNLR 164
Query: 165 ILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKD 224
+ + DVP++GLTATAT KV D+ K L + D KA FNRPNL+YEVR K K+
Sbjct: 165 NIVRLLGDVPMIGLTATATPKVQEDILKNLDMPDANTFKASFNRPNLYYEVRTKT---KN 221
Query: 225 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------- 277
++ + ++ + +SG+IY S K+ E++ + L+ G+ YHA L++
Sbjct: 222 IESDIIRFI-KQHKGKSGVIYCLSRKKVEEIAQVLQVNGISAVPYHAGLDAKTRAKHQDM 280
Query: 278 -----------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 281 FLMEDVEVVVATIAFGMGIDKPDVRFVIHHDIPKSLESYYQ 321
>gi|254805685|ref|YP_003083906.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha14]
gi|254669227|emb|CBA08061.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha14]
Length = 766
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 168/328 (51%), Gaps = 36/328 (10%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN---- 64
+ +L F +FR Q A IN +++MPT S ++ ++++
Sbjct: 6 AKQILHEVFGYPEFRGRQEAVINTLAGGGSLMVLMPTGGGKSLCYQIPALMREGVAVVVS 65
Query: 65 -LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSK 123
L +Q+A++++A ++ A+ + + +I LKLLYV+PE+L +
Sbjct: 66 PLIALMNDQVASLHVAGIEAAAVNSGTSAD--EAHEIADKLAQGRLKLLYVAPERLVTDR 123
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
F+ L + ++ AIDE HC S WGHDFRP+YQ L +L +P+VP + LTATA
Sbjct: 124 -FLRFLDQQ----TVSLFAIDEAHCVSQWGHDFRPEYQQLGMLAERYPNVPRIALTATAD 178
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
D++ L ++D + F+RPN++Y+V K +K +L + + + QSGI
Sbjct: 179 VATRADIKHYLHLDDAPEFISSFDRPNIYYQVIEKNNGKK----QLLEFIRKEMAGQSGI 234
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGI 285
+Y S K+ ED+ + LR GL YHA L +V ++AFG+GI
Sbjct: 235 VYCLSRKKVEDVAQFLRENGLNAIPYHAGLSMDVREENQRRFTHEDNIIVVATVAFGMGI 294
Query: 286 DKPNVRFVIHHCLSKSMENFYQVSIAFG 313
DKP+VRFV H + +S+E+FYQ S G
Sbjct: 295 DKPDVRFVAHLDMPQSVEHFYQESGRAG 322
>gi|264676290|ref|YP_003276196.1| ATP-dependent DNA helicase RecQ [Comamonas testosteroni CNB-2]
gi|262206802|gb|ACY30900.1| ATP-dependent DNA helicase RecQ [Comamonas testosteroni CNB-2]
Length = 636
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 104/326 (31%), Positives = 169/326 (51%), Gaps = 36/326 (11%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN---- 64
+S+L++ F FR Q A ++ + DA+++MPT S +V ++ + +
Sbjct: 4 AQSILQAVFGYEQFRGPQQAIVSHVINGGDALVLMPTGGGKSLCYQVPAIARQQLGHGVT 63
Query: 65 -----LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKL 119
L +Q+ A++ A + A + T + +++ L +S + LLY +PE+L
Sbjct: 64 IVVSPLIALMHDQVGALHEAGIS--AAYLNSTLSYDETQEVELRLQSGDITLLYAAPERL 121
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
+ F+ L ++ G L+ AIDE HC S WGHDFRP+Y+ LS+L + DVP + LT
Sbjct: 122 -NTPRFLGLLDDLHAQGKLSLFAIDEAHCVSQWGHDFRPEYRALSVLHQRYADVPRIALT 180
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATA D+ + LQ+E + F+RPN+ Y++ A +KD ++L + R
Sbjct: 181 ATADALTRADIIERLQLEAAQHFISSFDRPNIRYKI----AEKKDVSNQLLRFIEREHEG 236
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL--------------ESNV----SIAF 281
++G+IY S K E+L + L G+ YHA L E V +IAF
Sbjct: 237 EAGVIYCQSRKRVEELAQTLVQNGINALPYHAGLPQEMRQNHQDRFLREEGVVMCATIAF 296
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GI+KP+VRFV H + K++E +YQ
Sbjct: 297 GMGINKPDVRFVAHVDMPKNIEGYYQ 322
>gi|325284946|ref|YP_004260736.1| ATP-dependent DNA helicase RecQ [Cellulophaga lytica DSM 7489]
gi|324320400|gb|ADY27865.1| ATP-dependent DNA helicase RecQ [Cellulophaga lytica DSM 7489]
Length = 733
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 171/329 (51%), Gaps = 54/329 (16%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DRVRSVLKSKFNL 65
LK F T F+ Q + IN L + +IMPT S +++ S L
Sbjct: 12 LKKHFGFTKFKGLQESVINNLLKGNNTFVIMPTGGGKSLCYQLPALMQEGTAIVVSP--L 69
Query: 66 TDFRPNQLAAINIALLKKDAIIIMPTGKLLKK--KKICLMTESSSLKLLYVSPEKLAKSK 123
NQ+ AI + + I + L K K++ + KLLYV+PE L K +
Sbjct: 70 IALMKNQVDAIR-GISSEHGIAHVLNSSLTKTQVKEVKEDIVNGVTKLLYVAPESLIKEE 128
Query: 124 --SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLTA 180
F+ ++ ++ +A+DE HC S WGHDFRP+Y+ L +I+ + ++P++GLTA
Sbjct: 129 YVEFLRSVK-------ISFVAVDEAHCISEWGHDFRPEYRNLKTIVGKLGDNIPMIGLTA 181
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TAT KV D+ K L I D + KA FNRPNLFYEVR P Q + AD++ RF Q
Sbjct: 182 TATPKVQEDIVKNLGIADAKLFKASFNRPNLFYEVR--PKTQ----NIEADII--RFVKQ 233
Query: 241 ----SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------S 278
SGI+Y S K+ E+L + L+ G+ YHA ++ +
Sbjct: 234 NVGKSGIVYCLSRKKVEELAQVLQVNGISAVPYHAGFDAKTRSRYQDMFLMEEVDVVVAT 293
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
IAFG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 294 IAFGMGIDKPDVRFVIHHDIPKSLESYYQ 322
>gi|436833691|ref|YP_007318907.1| ATP-dependent DNA helicase RecQ [Fibrella aestuarina BUZ 2]
gi|384065104|emb|CCG98314.1| ATP-dependent DNA helicase RecQ [Fibrella aestuarina BUZ 2]
Length = 742
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 113/331 (34%), Positives = 166/331 (50%), Gaps = 49/331 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYP----------WSDRVRSVLK 60
++ LK F + FR +Q I+ L K+ +IMPT S+ V+
Sbjct: 12 LKERLKEIFGFSQFRGDQETIIHNILAGKNTFVIMPTGAGKSLCYQLPAIASEGTAIVIS 71
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
L + +QL A I +A + T + K+ T + +LKLLY++PE L
Sbjct: 72 PLIALMKNQVDQLNAFGI-----NAQFLNSTLSKTEMTKVKKDTLNGTLKLLYIAPESLT 126
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFP-----DVP 174
K ++ K ++ +AIDE HC S WGHDFRP+Y+ + I+ + +P
Sbjct: 127 KEENL-----DFLKKAVISFVAIDEAHCISEWGHDFRPEYRKIRGIVDNIGHHSGRMGLP 181
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
++ LTATAT KV D+QK L +ED V K FNR NL+YE++ K A+K + +
Sbjct: 182 VIALTATATPKVQQDIQKNLNMEDADVFKTSFNRKNLYYEIKPKVDAKKALIKYV----- 236
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------- 277
+ + +SGI+Y S K ED+ E LR +R YHA L+
Sbjct: 237 KHNKGKSGIVYCLSRKTAEDIAELLRVNDVRALPYHAGLDPQTRIANQDAFLNEEVDVVC 296
Query: 278 -SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIH+ KS+E +YQ
Sbjct: 297 ATIAFGMGIDKPDVRFVIHYDAPKSLEGYYQ 327
>gi|78187521|ref|YP_375564.1| ATP-requiring DNA helicase RecQ [Chlorobium luteolum DSM 273]
gi|78167423|gb|ABB24521.1| ATP-dependent DNA helicase RecQ [Chlorobium luteolum DSM 273]
Length = 615
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 113/330 (34%), Positives = 154/330 (46%), Gaps = 53/330 (16%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YPWSDRVRS 57
V L+ F FRPNQ + L +D +MPT P + V S
Sbjct: 10 VHEALQRVFGFQAFRPNQREVVRAILEGRDVFAVMPTGGGKSLCYQLPAVLLPGTCIVVS 69
Query: 58 VLKS--KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVS 115
L + K + R N I A L +P +++ + +S L+LLYV+
Sbjct: 70 PLIALMKDQVDGARAN---GIRAAFLNSSQ---LPE----ERQMVANALQSGELELLYVA 119
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE+ A + + M + ++ IDE HC S WGHDFRPDY LS L + P+
Sbjct: 120 PERFA-----VDSFRAMLRGIRISMAVIDEAHCISEWGHDFRPDYLSLSALVDLAGMAPV 174
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
TATAT +V D L + D +++A F+RPNL YEV K +A + L L R
Sbjct: 175 AAFTATATERVQADTLLRLALRDPFLVRASFDRPNLSYEVLFKDSADRQILSIL-----R 229
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
RF ++GIIY S K D LR +G R YHA L+
Sbjct: 230 RFSGKAGIIYRASRKSVNDTAAMLRAKGFRALPYHAGLDDREREQNQNAFIRDEVDVIIA 289
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GIDK N+RFVIH L KS+EN+YQ
Sbjct: 290 TVAFGMGIDKSNIRFVIHADLPKSIENYYQ 319
>gi|417846212|ref|ZP_12492224.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21639]
gi|341953231|gb|EGT79743.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21639]
Length = 627
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 114/325 (35%), Positives = 168/325 (51%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
SVLKS F FR Q IN AL +DA+++M T S + + V+
Sbjct: 26 SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQVPALCFEGLTLVISPL 85
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A I +A + + L +++++ S LKLLYVSPEK+ +
Sbjct: 86 ISLMKDQVDQLQANGI-----EADFLNSSQTLEQQQRVQNKLISGQLKLLYVSPEKVMTN 140
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
F ++ ++ IAIDE HC S WGHDFRP+Y L LK FP PI+ LTATA
Sbjct: 141 SFF-----QLISYSKVSFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPHAPIMALTATA 195
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFY--EVRIKPAAQKDCLDELADLMSRRFRNQ 240
D+ L +E+ F+RPN+ Y E + KP +++L + + + +
Sbjct: 196 DHATRQDILTHLNLENPHRYIGSFDRPNIRYTLEEKYKP------MEQLTRFVLAQ-KGK 248
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES-------------NV-----SIAFG 282
SGIIY S + E + E LRN+G+ +AYHA +E+ NV +IAFG
Sbjct: 249 SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETALRERVQQDFQRDNVQVVVATIAFG 308
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+K NVRF+ H L +S+E++YQ
Sbjct: 309 MGINKSNVRFIAHFDLPRSIESYYQ 333
>gi|386820490|ref|ZP_10107706.1| ATP-dependent DNA helicase RecQ [Joostella marina DSM 19592]
gi|386425596|gb|EIJ39426.1| ATP-dependent DNA helicase RecQ [Joostella marina DSM 19592]
Length = 733
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 113/329 (34%), Positives = 173/329 (52%), Gaps = 46/329 (13%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+++ LK F + F+ Q I + ++ +IMPT S D V+
Sbjct: 8 LQAALKQYFGFSQFKGLQEKVIKNIINDQNTFVIMPTGGGKSLCYQLPALVKDGTAIVIS 67
Query: 61 SKFNLTDFRPNQLAAI-NIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKL 119
L NQ+ AI I+ K A ++ + + +++ + KLLYV+PE L
Sbjct: 68 P---LIALMKNQVDAIRGISSNKGIAHVLNSSLNKTEVRQVKEDITNGVTKLLYVAPESL 124
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGL 178
K + + ++ ++ +A+DE HC S WGHDFRP+Y+ + +I++ + D+PI+ L
Sbjct: 125 TKEEYV-----EFFRTVKISFVAVDEAHCISEWGHDFRPEYRNIRTIIQRLGDDIPIIAL 179
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS--RR 236
TATAT KV D+ K L + V KA FNRPNL+YEVR K +D AD++ ++
Sbjct: 180 TATATPKVQEDILKNLGVNSAEVYKASFNRPNLYYEVRPKTK----NVD--ADIIRFVKQ 233
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------S 278
+SGIIY S K E+L + L+ GL+ YHA L++ +
Sbjct: 234 NEGKSGIIYCLSRKRVEELAQTLQVNGLKAVPYHAGLDAKTRARHQDMFLMEDTDIVVAT 293
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
IAFG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 294 IAFGMGIDKPDVRFVIHHDIPKSIESYYQ 322
>gi|395218411|ref|ZP_10402063.1| ATP-dependent DNA helicase RecQ [Pontibacter sp. BAB1700]
gi|394454486|gb|EJF09132.1| ATP-dependent DNA helicase RecQ [Pontibacter sp. BAB1700]
Length = 624
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 114/331 (34%), Positives = 165/331 (49%), Gaps = 55/331 (16%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDF 68
R LK F FRP Q I L +KD +++MPT S +V +V+
Sbjct: 8 AREALKLYFGYEQFRPMQEHIITNILQQKDVVVLMPTGGGKSVCYQVPAVVM-------- 59
Query: 69 RPNQLAAIN--IALLKKDAIIIMPTG----------KLLKKKKICLMTESSSLKLLYVSP 116
P ++ IAL+K ++ G ++ +I + + +KLLYVSP
Sbjct: 60 -PGLCVVVSPLIALMKDQVEALLANGIPAAYLNSSQTADEQYQIEEKSLAGQIKLLYVSP 118
Query: 117 EKLAKSK--SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
EKL + SF+ +LQ ++ A+DE HC S+WGHDFRP+Y L LK FP VP
Sbjct: 119 EKLLSAGFFSFLKRLQ-------VSLFAVDEAHCISAWGHDFRPEYTQLRALKQQFPAVP 171
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
++ LTATA D+Q+ LQ+ V A F+RPN+ + + P + +++ D +S
Sbjct: 172 VVALTATADKLTQKDIQEQLQLRQPEVFVASFDRPNI--NLMVLPGQNR--FNKITDFLS 227
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------ 276
RR Q GIIY S K E L +LR G + YHA + +
Sbjct: 228 RR-HGQPGIIYCLSRKATESLAGKLRENGYNATFYHAGMSAQQRSKAQESFLRDDVLIVC 286
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDK NVR+VIH+ L K++E +YQ
Sbjct: 287 ATIAFGMGIDKSNVRWVIHYNLPKNVEGYYQ 317
>gi|390954980|ref|YP_006418738.1| RecQ familyATP-dependent DNA helicase [Aequorivita sublithincola
DSM 14238]
gi|390420966|gb|AFL81723.1| ATP-dependent DNA helicase, RecQ family [Aequorivita sublithincola
DSM 14238]
Length = 730
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 115/327 (35%), Positives = 171/327 (52%), Gaps = 42/327 (12%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DRVRSVLKS 61
+ + LK F T F+ Q I L + ++MPT S +++ S
Sbjct: 6 IYAALKKYFGFTRFKGLQEEVIKSILQGNNTFVVMPTGGGKSLCYQLPALMQEGTAIVVS 65
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKK--KKICLMTESSSLKLLYVSPEKL 119
L NQ+ A+ AL ++ I + L K K + S KLLYV+PE L
Sbjct: 66 P--LIALMKNQVDALR-ALSSEEGIAHVLNSSLNKTEVKNVKADIASGITKLLYVAPESL 122
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGL 178
K + ++ LQ ++ +AIDE HC S WGHDFRP+Y+ L SI++ + ++PI+GL
Sbjct: 123 TKEE-YVNFLQTQ----KISFMAIDEAHCISEWGHDFRPEYRNLKSIIQRIGDNIPIIGL 177
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFR 238
TATAT KV D+ K L ++D KA FNRPNL+YE+R K K+ ++ + +
Sbjct: 178 TATATPKVQEDILKNLNMQDANTFKASFNRPNLYYEIRPKT---KNVDSDIIRFVKQN-E 233
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
++GIIY S K E+L + L+ G++ YHA L+ +IA
Sbjct: 234 GKTGIIYCLSRKRVEELAQALQVNGIKAVPYHAGLDGKTRVKHQDMFLMEDVDVVVATIA 293
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GIDKP+VRFVIH+ + KS+E++YQ
Sbjct: 294 FGMGIDKPDVRFVIHNDIPKSIESYYQ 320
>gi|359454206|ref|ZP_09243496.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20495]
gi|414070221|ref|ZP_11406208.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. Bsw20308]
gi|358048729|dbj|GAA79745.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20495]
gi|410807319|gb|EKS13298.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. Bsw20308]
Length = 607
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 111/335 (33%), Positives = 174/335 (51%), Gaps = 50/335 (14%)
Query: 6 PWSDRVR---SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------- 52
P S VR +VLK F ++FR Q A I+ A+ D+++++PT S
Sbjct: 7 PSSTLVRKPETVLKQVFGYSEFRDGQKAVIDAAINGHDSLVLLPTGGGKSVCYQIPALVL 66
Query: 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLL 112
+ V V+ +L + QL A+ + + + +L+ ++ +KLL
Sbjct: 67 EGVTIVISPLISLMQDQVTQLQALGVKAAYVNNSLAREEQQLVYQQ-----LHQGLIKLL 121
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
YV+PEK+ + + F+ +L + ++ AIDE HC S WGHDFRP Y L+ LK F
Sbjct: 122 YVAPEKVLQ-RDFLERLSHL----NVSLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFAH 176
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFY--EVRIKPAAQKDCLDELA 230
VP++ LTATA D+ + L+++ + F+RPN+ Y E + KP Q L L
Sbjct: 177 VPMMALTATADKATRFDIVEQLKLQQPYIHTGSFDRPNIRYTIEEKFKPMVQ--LLRYLK 234
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN-------------- 276
+ +NQSGIIY TS K +D+ E+L + GL +AYHA + +
Sbjct: 235 EQ-----KNQSGIIYCTSRKRVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDI 289
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KPNVRFV+H+ + KS+E++YQ
Sbjct: 290 QIVVATVAFGMGINKPNVRFVLHYDIPKSIESYYQ 324
>gi|407035712|gb|EKE37810.1| recQ family helicase, putative [Entamoeba nuttalli P19]
Length = 774
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 110/339 (32%), Positives = 167/339 (49%), Gaps = 40/339 (11%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
N+ W +RV+ VL F+ R Q IN L + + +MPT S ++ S+ K
Sbjct: 366 NFHWKERVKEVLHKVFHHETLRLLQYPVINAILAGHNVLALMPTGGGKSLCYQLPSLFKD 425
Query: 62 KFNLT-----DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMT---ESSSLKLLY 113
+ L +Q+ A+N D I T + I + E+ +K++Y
Sbjct: 426 GYTLVVSPLISLMQDQVKALN------DLGIPAITCNSNNPENIDIFINDIETRKIKIVY 479
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
V+PE L+ S ++K+Y G + + IDE HC S WGHDFR Y L + FP V
Sbjct: 480 VAPELLSCSWKMNEAMKKLYDRGLFSYLVIDEAHCISQWGHDFRQSYVELREFRKTFPSV 539
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIK-PAAQKDCLDELADL 232
+ TATAT +V D+ + +E+ +V FNRPNL YE R+K P + D +
Sbjct: 540 QTILFTATATERVKNDILLSMGLEEAIVFNQTFNRPNLRYETRVKSPKVEVDIAHYI--- 596
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
++ NQ GI++ S K+CE L + L N G+R + YHA L++
Sbjct: 597 --QQHPNQCGIVFCLSKKDCESLSKFLVNYGIRATHYHAGLDAKRRKKVQNDWMNGTFLV 654
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKP+VRFVIH + S+E ++Q + G
Sbjct: 655 VCATVAFGMGIDKPDVRFVIHQTMPSSIEQYFQEAGRAG 693
>gi|340351994|ref|ZP_08674884.1| ATP-dependent helicase RecQ [Prevotella pallens ATCC 700821]
gi|339615729|gb|EGQ20399.1| ATP-dependent helicase RecQ [Prevotella pallens ATCC 700821]
Length = 727
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 114/323 (35%), Positives = 161/323 (49%), Gaps = 41/323 (12%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFN 64
LK F F+ Q A I L D ++MPT S D V+
Sbjct: 11 LKYFFGFDKFKGAQEAIIQNVLAGNDTFVLMPTGGGKSLCYQLPSLIMDGTAIVISP--- 67
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE--SSSLKLLYVSPEKLAKS 122
L NQ+ IN + ++D + L K + + + + KLLYV+PE L K
Sbjct: 68 LIALMKNQVDVIN-GISEEDGVAHYLNSSLKKTEIDHVKADILNGKTKLLYVAPESLNKE 126
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+S + +K ++ AIDE HC S WGHDFRP+Y+ + + PI+ LTATA
Sbjct: 127 ESI-----EFFKTVKVSFYAIDEAHCISEWGHDFRPEYRKIRQAVDLIGKAPIIALTATA 181
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSG 242
T KV D+ K L IEDC K+ FNRPNL+YEVR K ++D ++ + + +SG
Sbjct: 182 TDKVRTDIVKSLGIEDCAEFKSSFNRPNLYYEVRSK-KNEEDTNRQIIKFIKQN-PGKSG 239
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 284
IIY S K+ E+L L+ ++ YHA L+S +IAFG+G
Sbjct: 240 IIYCLSRKKVEELAAVLQANDIKAEPYHAGLDSETRSRTQDDFLMENIDVIVATIAFGMG 299
Query: 285 IDKPNVRFVIHHCLSKSMENFYQ 307
IDKP+VRFVIH+ + KS+E +YQ
Sbjct: 300 IDKPDVRFVIHYDIPKSLEGYYQ 322
>gi|292486686|ref|YP_003529556.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora CFBP1430]
gi|292897923|ref|YP_003537292.1| ATP-dependent DNA helicase [Erwinia amylovora ATCC 49946]
gi|428783612|ref|ZP_19001107.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora ACW56400]
gi|291197771|emb|CBJ44866.1| ATP-dependent DNA helicase [Erwinia amylovora ATCC 49946]
gi|291552103|emb|CBA19140.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora CFBP1430]
gi|312170752|emb|CBX79014.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora ATCC BAA-2158]
gi|426277898|gb|EKV55621.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora ACW56400]
Length = 610
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 166/325 (51%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS----VLKSK 62
VL+ F FRP Q I +L +D +++MPT Y VR V+
Sbjct: 15 QVLRDTFGYQQFRPGQQTIIQESLNGRDCLVVMPTGGGKSLCYQIPALVRQGLTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A +A A + T +++ + S ++LLY++PE+L
Sbjct: 75 ISLMKDQVDQLLANGVA-----AACLNSTQNREEQQNVMAGCRSGKVRLLYIAPERLMMD 129
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+F+ +L A +A+DE HC S WGHDFRP+Y L L+ PDVP++ LTATA
Sbjct: 130 -NFLEQLTHCNPA----MLAVDEAHCISQWGHDFRPEYGALGQLRQRLPDVPVMALTATA 184
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++LQ+ D ++ + F+RPN+ Y + + KP Q L + D R +
Sbjct: 185 DETTRNDIARLLQLNDPLIQISSFDRPNIRYTLVEKFKPTEQ--LLRYVQDQ-----RGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
GIIY S + ED L++RGL V AYHA +++ ++AFG
Sbjct: 238 CGIIYCNSRAKVEDTAARLQSRGLSVGAYHAGMDNAHRAQVQEAFQRDDLQIVVATVAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|163756913|ref|ZP_02164021.1| putative ATP-dependent DNA helicase [Kordia algicida OT-1]
gi|161323149|gb|EDP94490.1| putative ATP-dependent DNA helicase [Kordia algicida OT-1]
Length = 732
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 171/325 (52%), Gaps = 46/325 (14%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-----LTD 67
LK F F+ Q I + K+ +IMPT S ++ +++K L
Sbjct: 12 LKKHFGFGQFKGLQEEVIKSIISNKNTFVIMPTGGGKSLCYQLPALMKEGTAIVVSPLIA 71
Query: 68 FRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS--LKLLYVSPEKLAKSK-- 123
NQ+ A+ + +D I + L K + + + ++ KLLYV+PE L K +
Sbjct: 72 LMKNQVDALR-GISSQDGIAHVLNSSLTKAETRQVKEDITNGITKLLYVAPESLTKEENV 130
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLTATA 182
+F+ +Q ++ +A+DE HC S WGHDFRP+Y+ L +I+ + ++PI+GLTATA
Sbjct: 131 AFLRTVQ-------ISFMAVDEAHCISEWGHDFRPEYRNLKNIIGKIGDNIPIIGLTATA 183
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ-- 240
T KV D+ K L + D KA FNRPNL+YEVR K D AD++ +NQ
Sbjct: 184 TPKVQEDILKNLGMTDANTFKASFNRPNLYYEVRPKTK------DVDADIIRFIKQNQGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGI+Y S K E+L + L+ G+ YHA L+ +IAFG
Sbjct: 238 SGIVYCLSRKRVEELAQVLQVNGINAVPYHAGLDPKKRAKHQDMFLMEDCDVVVATIAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 298 MGIDKPDVRFVIHHDIPKSIESYYQ 322
>gi|340618927|ref|YP_004737380.1| ATP-dependent DNA helicase RecQ [Zobellia galactanivorans]
gi|339733724|emb|CAZ97101.1| ATP-dependent DNA helicase RecQ [Zobellia galactanivorans]
Length = 736
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 119/328 (36%), Positives = 167/328 (50%), Gaps = 44/328 (13%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ + LK F ++F+ Q A I L + + IMPT S D V+
Sbjct: 13 LHASLKKHFGFSEFKGLQQAVITNILERNNTFAIMPTGGGKSLCYQLPALMQDGTAIVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKK--KKICLMTESSSLKLLYVSPEK 118
L NQ+ AI + + I + L K +++ + KLLYV+PE
Sbjct: 73 P---LIALMKNQVDAIR-GVSDQFGIAHVLNSSLTKTEVRQVKEDITNGITKLLYVAPES 128
Query: 119 LAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILG 177
L K + ++ LQ + L+ IA+DE HC S WGHDFRP+Y+ L +I+ + D+PI+
Sbjct: 129 LTK-EDYIDFLQSV----KLSFIAVDEAHCISEWGHDFRPEYRNLRTIVNRLDDDIPIIA 183
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT KV D+ K L I D KA FNRPNLFYEVR K A +D ++
Sbjct: 184 LTATATPKVQEDIIKNLGITDAQTYKASFNRPNLFYEVRPKTA----NVDSDIIRFVKKN 239
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SI 279
+SGIIY S K E+L + L+ G+ YHA ++ +I
Sbjct: 240 AGKSGIIYCLSRKRVEELAQVLQVNGVSAVPYHAGFDAKTRSKYQDMFLMEDVDVVVATI 299
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
AFG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 300 AFGMGIDKPDVRFVIHHDIPKSIESYYQ 327
>gi|148827918|ref|YP_001292671.1| frataxin-like protein [Haemophilus influenzae PittGG]
gi|148719160|gb|ABR00288.1| frataxin-like protein [Haemophilus influenzae PittGG]
Length = 619
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 168/325 (51%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
SVLKS F FR Q IN L +DA+++M T S D + V+
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINATLNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A I +A + + L +++++ S LKLLYVSPEK+ +
Sbjct: 78 ISLMKDQVDQLQANGI-----EADFLNSSQTLAQQQQVQNKLISGQLKLLYVSPEKVM-T 131
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
SF + Y C IAIDE HC S WGHDFRP+Y L LK FPD PI+ LTATA
Sbjct: 132 NSFFQLIS--YSKVCF--IAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATA 187
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFY--EVRIKPAAQKDCLDELADLMSRRFRNQ 240
D+ + L +++ F+RPN+ Y E + KP +++L + + + +
Sbjct: 188 DYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKP------MEQLTRFVLAQ-KGK 240
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282
SGIIY S + E + E LRN+G+ +AYHA +E+ + +IAFG
Sbjct: 241 SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFG 300
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+K NVRFV H L +S+E++YQ
Sbjct: 301 MGINKSNVRFVAHFDLPRSIESYYQ 325
>gi|261250050|ref|ZP_05942627.1| ATP-dependent DNA helicase RecQ [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|260939554|gb|EEX95539.1| ATP-dependent DNA helicase RecQ [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 602
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 172/324 (53%), Gaps = 43/324 (13%)
Query: 12 RSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDFR 69
+S+L++ F FR Q I A+ +D+++IMPT S ++ ++++S L
Sbjct: 8 QSILENVFGYQIFRDGQQEVIESAVAGQDSLVIMPTGGGKSLCYQIPALVRSGLTLVISP 67
Query: 70 PNQLAAINIALLKKDAIIIMPTGKLLKKKKICLM---TESSSLKLLYVSPEKLAKSKSFM 126
L + LK + + + ++++ + S +LKL+YVSPE++ + F+
Sbjct: 68 LISLMKDQVDQLKANGVAAECINSTMSREELISVYNRMHSGALKLVYVSPERVLM-RDFI 126
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186
+L+ + L+ IA+DE HC S WGHDFRP+Y L LK FP VP++ LTATA
Sbjct: 127 ERLESL----PLSMIAVDEAHCISQWGHDFRPEYASLGQLKQYFPHVPVMALTATADDAT 182
Query: 187 MLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQS--- 241
D+ + LQ+ + F+RPN+ Y + + KP +Q + R NQ
Sbjct: 183 RKDIMQRLQLNEPHTYLGSFDRPNIRYTLVEKHKPVSQ----------VVRFLENQRGSC 232
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGL 283
GIIY S K+ E + E+L N GLR ++YHA LE++ ++AFG+
Sbjct: 233 GIIYCGSRKKVEMVTEKLCNNGLRAASYHAGLEADERAYVQEAFQRDDIQIVVATVAFGM 292
Query: 284 GIDKPNVRFVIHHCLSKSMENFYQ 307
GI+KPNVRFV+H + +++E++YQ
Sbjct: 293 GINKPNVRFVVHFDIPRNIESYYQ 316
>gi|157144447|ref|YP_001451766.1| ATP-dependent DNA helicase RecQ [Citrobacter koseri ATCC BAA-895]
gi|157081652|gb|ABV11330.1| hypothetical protein CKO_00161 [Citrobacter koseri ATCC BAA-895]
Length = 609
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 168/326 (51%), Gaps = 47/326 (14%)
Query: 12 RSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKS 61
+ VL+ F FRP Q I + +D +++MPT S + + V+
Sbjct: 14 KQVLQETFGYQQFRPGQEEIIETVVSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSP 73
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAK 121
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 74 LISLMKDQVDQLLANGVA-----AACLNSTQSREQQHEVMAGCRTGQVRLLYIAPERLML 128
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTAT
Sbjct: 129 D-NFLEHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPSLPFMALTAT 183
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRN 239
A LD+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 184 ADDTTRLDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-RG 236
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 281
+SGIIY S + ED L++RG+ +AYHA LE+NV ++AF
Sbjct: 237 KSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAF 296
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GI+KPNVRFV+H + +++E++YQ
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|91775306|ref|YP_545062.1| ATP-dependent DNA helicase RecQ [Methylobacillus flagellatus KT]
gi|91775450|ref|YP_545206.1| ATP-dependent DNA helicase RecQ [Methylobacillus flagellatus KT]
gi|91709293|gb|ABE49221.1| ATP-dependent DNA helicase RecQ [Methylobacillus flagellatus KT]
gi|91709437|gb|ABE49365.1| ATP-dependent DNA helicase RecQ [Methylobacillus flagellatus KT]
gi|167042457|gb|ABZ07183.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
HF4000_ANIW133B20]
Length = 611
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 106/322 (32%), Positives = 165/322 (51%), Gaps = 32/322 (9%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN---- 64
+ +L+ F + FR Q A +N + DA+++MPT S ++ S+L+
Sbjct: 7 AQQLLEQTFGYSAFRGEQEAIVNHVVDGGDALVLMPTGGGKSLCYQIPSLLRPGVGIVVS 66
Query: 65 -LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSK 123
L +Q+ A+ L A + + + + LK+LYV+PE+L +
Sbjct: 67 PLIALMQDQVDALR--QLGIQAAFLNSSLDADTARHVYQALMRGELKVLYVAPERLM-TP 123
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
SF++ L + + +A AIDE HC S WGHDFRP+Y+ L++L FP+VP + LTATA
Sbjct: 124 SFLSTLHDIQQRFGIALFAIDEAHCVSQWGHDFRPEYRQLTVLHEEFPEVPRIALTATAD 183
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
T ++ + L +E + F+RPN+ Y V +K A+K +L + N +GI
Sbjct: 184 TPTRNEIVERLGLEHARQFISSFDRPNIRYRVALKNNARK----QLLGFLESEHPNDAGI 239
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGI 285
IY S ++ E+ L+ +G YHA L++ V ++AFG+GI
Sbjct: 240 IYCLSRRKVEETAAWLKEQGWDALPYHAGLDATVRQANQQRFLREEGIIMVATVAFGMGI 299
Query: 286 DKPNVRFVIHHCLSKSMENFYQ 307
DKPNVRFV+H L KSME +YQ
Sbjct: 300 DKPNVRFVVHLDLPKSMEGYYQ 321
>gi|417955149|ref|ZP_12598172.1| ATP-dependent DNA helicase RecQ [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|342813701|gb|EGU48661.1| ATP-dependent DNA helicase RecQ [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 612
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 172/324 (53%), Gaps = 43/324 (13%)
Query: 12 RSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDFR 69
+S+L++ F FR Q I A+ +D+++IMPT S ++ ++++S L
Sbjct: 18 QSILENVFGYQIFRDGQQEVIESAVAGQDSLVIMPTGGGKSLCYQIPALVRSGLTLVISP 77
Query: 70 PNQLAAINIALLKKDAIIIMPTGKLLKKKKICLM---TESSSLKLLYVSPEKLAKSKSFM 126
L + LK + + + ++++ + S +LKL+YVSPE++ + F+
Sbjct: 78 LISLMKDQVDQLKANGVAAECINSTMSREELISVYNRMHSGALKLVYVSPERVLM-RDFI 136
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186
+L+ + L+ IA+DE HC S WGHDFRP+Y L LK FP VP++ LTATA
Sbjct: 137 ERLESL----PLSMIAVDEAHCISQWGHDFRPEYASLGQLKQYFPHVPVMALTATADDAT 192
Query: 187 MLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQS--- 241
D+ + LQ+ + F+RPN+ Y + + KP +Q + R NQ
Sbjct: 193 RKDIMQRLQLNEPHTYLGSFDRPNIRYTLVEKHKPVSQ----------VVRFLENQRGSC 242
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGL 283
GIIY S K+ E + E+L N GLR ++YHA LE++ ++AFG+
Sbjct: 243 GIIYCGSRKKVEMVTEKLCNNGLRAASYHAGLEADERAYVQEAFQRDDIQIVVATVAFGM 302
Query: 284 GIDKPNVRFVIHHCLSKSMENFYQ 307
GI+KPNVRFV+H + +++E++YQ
Sbjct: 303 GINKPNVRFVVHFDIPRNIESYYQ 326
>gi|359446850|ref|ZP_09236489.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20439]
gi|358039322|dbj|GAA72738.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20439]
Length = 607
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 108/325 (33%), Positives = 170/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
+VLK F ++FR Q A I+ A+ +D+++++PT S + V V+
Sbjct: 17 TVLKQVFGYSEFRDGQSAVIDAAINGQDSLVLLPTGGGKSVCYQIPALVLEGVTIVISPL 76
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + QL A+ + A I + +++ + +KLLYV+PEK+ +
Sbjct: 77 ISLMQDQVTQLQALGV-----KAAYINNSLAREEQQLVYQQLHQGLIKLLYVAPEKVLQ- 130
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+ F+ +L + ++ AIDE HC S WGHDFRP Y L+ LK F VP++ LTATA
Sbjct: 131 REFLERLSHL----NVSLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFTHVPMMALTATA 186
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFY--EVRIKPAAQKDCLDELADLMSRRFRNQ 240
D+ + L+++ + F+RPN+ Y E + KP Q L L + +NQ
Sbjct: 187 DKATRFDIVEQLKLQQPYIHTGSFDRPNIRYTIEEKFKPMVQ--LLRYLKEQ-----KNQ 239
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY TS K +D+ E+L + GL +AYHA + + ++AFG
Sbjct: 240 SGIIYCTSRKRVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFG 299
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H+ + KS+E +YQ
Sbjct: 300 MGINKPNVRFVLHYDIPKSIEAYYQ 324
>gi|189466850|ref|ZP_03015635.1| hypothetical protein BACINT_03226 [Bacteroides intestinalis DSM
17393]
gi|189435114|gb|EDV04099.1| ATP-dependent DNA helicase RecQ [Bacteroides intestinalis DSM
17393]
Length = 602
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 110/322 (34%), Positives = 165/322 (51%), Gaps = 41/322 (12%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKF 63
LK F FRP Q I L +D++++MPT S + V+
Sbjct: 4 TLKRYFGYDSFRPLQEEIIRTVLDGRDSLVLMPTGGGKSICYQLPALLCEGTAVVVSPLI 63
Query: 64 NLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSK 123
+L + L A +A ++ +L++ C+ SLKLLY+SPEKL
Sbjct: 64 SLMKDQVESLCANGVAAGALNSSNDETENAVLRRA--CM---EGSLKLLYISPEKLIAEA 118
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
+++ L+ M+ ++ AIDE HC S WGHDFRP+Y + ++ MFP++P++ LTATA
Sbjct: 119 NYL--LRDMH----ISLFAIDEAHCISQWGHDFRPEYAQMGFIREMFPNIPVIALTATAD 172
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
D+ + L + V + F+RPNL V+ + QK+ + D + R R +SGI
Sbjct: 173 KITREDIVRQLHLNQPKVFISSFDRPNLSLTVK-RGYQQKEKSKAILDFIGRH-RGESGI 230
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGI 285
IY S + E + + L+ +GLRV+ YHA L S +IAFG+GI
Sbjct: 231 IYCMSRSKTETVAQMLQKQGLRVAVYHAGLSSVRRDEAQDDFINDRVQIVCATIAFGMGI 290
Query: 286 DKPNVRFVIHHCLSKSMENFYQ 307
DK NVR+VIH+ L KS+E+FYQ
Sbjct: 291 DKSNVRWVIHYNLPKSIESFYQ 312
>gi|387592527|gb|EIJ87551.1| hypothetical protein NEQG_02098 [Nematocida parisii ERTm3]
gi|387595153|gb|EIJ92778.1| hypothetical protein NEPG_02177 [Nematocida parisii ERTm1]
Length = 861
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 123/339 (36%), Positives = 172/339 (50%), Gaps = 44/339 (12%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS---------DRVRSVLKSKFN- 64
L+ F L DFR NQL I+ L +D ++MPT S R +V+ S
Sbjct: 320 LRKVFRLYDFRQNQLQIISAVLDGRDVFVLMPTGGGKSLTFQLPAIISRGITVVVSPLLA 379
Query: 65 -LTDFRPNQLA------AINIALLKKDAII----IMPTGKLLKKKKICLMTESSSLKLLY 113
+ D N LA AIN +L K + I I+ G L K K K++Y
Sbjct: 380 LIQDQIKNLLAKGIPAVAINSSLTKSERDIAYHMILMVG-LDKDKHEPTEKRMPVTKIVY 438
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
+PE L +S++F L+ + + L R IDE HC S WGHDFRPDY L LK +P++
Sbjct: 439 ATPELLVESQTFNRALETLSQQNRLTRFVIDEAHCVSQWGHDFRPDYTQLFRLKERYPNI 498
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
PI LTATAT V DV L++++C + FNRPNL Y R+ P K+ + E+ +
Sbjct: 499 PITALTATATAAVKKDVTDALRLKNCKIFTQSFNRPNLKY--RVIPKT-KNQIAEIVSFI 555
Query: 234 SRRFRNQSGIIYTTSIKECEDLREEL-RNRGLRVSAYHAKLESN---------------- 276
+ SGIIY S ++CE L E L ++ G+R YHA L +
Sbjct: 556 ETHYPEDSGIIYCLSKRDCEWLAETLQKDHGIRAGYYHAGLSTKERTERAREWDSSHIRV 615
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDK +VR+V+H+ L KS+E +YQ + G
Sbjct: 616 IVATIAFGMGIDKKDVRYVLHYSLPKSLEGYYQETGRAG 654
>gi|119943986|ref|YP_941666.1| ATP-dependent DNA helicase RecQ [Psychromonas ingrahamii 37]
gi|119862590|gb|ABM02067.1| ATP-dependent DNA helicase RecQ [Psychromonas ingrahamii 37]
Length = 602
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 170/330 (51%), Gaps = 47/330 (14%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRS 57
+D + +L F +FR Q IN +DA+++MPT S +
Sbjct: 6 ADNAKQILLDVFGYNEFREGQELIINQLCEGRDALVVMPTGGGKSLCFQIPALVKPGICF 65
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPE 117
V+ +L + + L A +A A + + ++ ++ S LKL+Y++PE
Sbjct: 66 VISPLISLMKDQVDALRACGVA-----AAYLNSSLSYQQQNQVLNDMHSGQLKLVYMAPE 120
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
+L + F+++L + + AIDE HC S WGHDFRP+Y L LK FPD+P++
Sbjct: 121 RLLRP-DFLSRLDNL----PINLFAIDEAHCISQWGHDFRPEYALLGQLKQRFPDIPLVA 175
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSR 235
LTATA D+ LQ D ++ F+RPN+ Y + + +P L++LA+ +
Sbjct: 176 LTATADYATQQDILARLQFNDPLIAIHSFDRPNIEYLLIEKYRP------LNQLANYLDE 229
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------V 277
+N+SGIIY TS + E+L E+LR +GL V YHA +
Sbjct: 230 H-KNESGIIYCTSRRRTEELAEKLRVKGLSVRCYHAGMMIEERQSVQDLFIKDKVDIVVA 288
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GIDKPNVRFV+H+ + K++E++YQ
Sbjct: 289 TVAFGMGIDKPNVRFVVHYEIPKNIESYYQ 318
>gi|213852872|ref|ZP_03382404.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length = 373
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 104/326 (31%), Positives = 169/326 (51%), Gaps = 47/326 (14%)
Query: 12 RSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKS 61
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 20 KQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSP 79
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAK 121
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 80 LISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLML 134
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTAT
Sbjct: 135 D-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTAT 189
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRN 239
A D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 190 ADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-RG 242
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 281
+SGIIY S + ED L++RG+ +AYHA LE+ + ++AF
Sbjct: 243 KSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVAF 302
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GI+KPNVRFV+H + +++E++YQ
Sbjct: 303 GMGINKPNVRFVVHFDIPRNIESYYQ 328
>gi|50123092|ref|YP_052259.1| ATP-dependent DNA helicase RecQ [Pectobacterium atrosepticum
SCRI1043]
gi|49613618|emb|CAG77069.1| ATP-dependent DNA helicase [Pectobacterium atrosepticum SCRI1043]
Length = 608
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 104/325 (32%), Positives = 168/325 (51%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q I+ L +D ++IMPT S D + V+
Sbjct: 15 QVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIPALVMDGLTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A ++ A + T ++ ++ + +KLLY++PE+L +
Sbjct: 75 ISLMKDQVDQLQAYGVS-----AACLNSTQTREQQFEVMAGCRTGQIKLLYIAPERLT-T 128
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+SF+ L ++ IA+DE HC S WGHDFRP+Y+ L +K FP +P + LTATA
Sbjct: 129 ESFLDHLAHWQ----ISLIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIALTATA 184
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L ++ ++ + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 185 DETTRNDIVRLLDLQSPLIQISSFDRPNIRYTLVEKFKP------LDQLWMFVQAQ-RGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S ED+ L+ RGL AYHA L++ ++AFG
Sbjct: 238 SGIIYCNSRSRVEDISARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|389746803|gb|EIM87982.1| ATP-dependent DNA helicase [Stereum hirsutum FP-91666 SS1]
Length = 523
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 159/329 (48%), Gaps = 41/329 (12%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS-----------DRVRSVLKSK 62
+LK F L FR NQL AI L D I+ PT S + R V
Sbjct: 3 ILKGTFGLGSFRENQLEAILATLTGLDVFILKPTGGGKSLCFQVPALCVGGKTRGVTIVI 62
Query: 63 FNLTDFRPNQLA-----AINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPE 117
LT +Q+ ++ L+ D I+ + ++ L + KL++V+PE
Sbjct: 63 SPLTSLMMDQVKWLLSKGVDAVLITHDQIVPEQEPSIWQR----LNGPDTKPKLIFVTPE 118
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
K+A++ L+ +YK LAR A+DE H +WG DFR YQ L L+ FPD+PIL
Sbjct: 119 KMAQNADLRQALRYLYKERMLARFAVDEAHLLGTWGRDFRDAYQCLKNLRRDFPDIPILA 178
Query: 178 LTATATTKVMLDVQKMLQIE-DCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LT +AT +++ L ++ + V + FNRPNL Y V +P ++ +A +
Sbjct: 179 LTGSATNADQEHIRRTLCLKPNHVFLAESFNRPNLHYTVLPRPG--RNFTKVIASYIKGS 236
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL---------------ESNV---S 278
Q+GI+Y CE + ELR GL S +H + ES++ +
Sbjct: 237 HPKQAGIVYCIGRSTCERVAAELRGYGLSASHFHGAMLDSEKQYTMESWLSGESDIVVAT 296
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
IAFG+GI KPNVRF+IHH L S+ N+YQ
Sbjct: 297 IAFGMGIHKPNVRFIIHHGLPSSLTNYYQ 325
>gi|440228947|ref|YP_007342740.1| ATP-dependent DNA helicase RecQ [Serratia marcescens FGI94]
gi|440050652|gb|AGB80555.1| ATP-dependent DNA helicase RecQ [Serratia marcescens FGI94]
Length = 614
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 105/325 (32%), Positives = 170/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q I+ +D +++MPT S + + V+
Sbjct: 19 QVLRDTFGYQQFRPGQQTIIDAVTRGQDCLVVMPTGGGKSLCYQIPALMLEGLTLVVSPL 78
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A +A A T ++ ++ S ++K+LY++PE+L
Sbjct: 79 ISLMKDQVDQLLANGVA-----AACYNSTQTREQQLEVMAGCRSGAIKMLYIAPERLMMD 133
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
SF++ L A +A+DE HC S WGHDFRP+Y+ L LK FP +P++ LTATA
Sbjct: 134 -SFLSLLDSCPPA----MLAVDEAHCISQWGHDFRPEYRALGQLKQRFPAMPVVALTATA 188
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L ++D ++ + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 189 DETTRNDITRLLALQDPLIQVSSFDRPNIRYTLVEKFKP------LDQLWRFVQDQ-RGK 241
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S + ED L++RGL V+AYHA L++ ++AFG
Sbjct: 242 SGIIYCNSRAKVEDTAARLQSRGLSVAAYHAGLDNARRAQVQEGFQRDDLQVVVATVAFG 301
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 302 MGINKPNVRFVVHFDIPRNIESYYQ 326
>gi|408674061|ref|YP_006873809.1| ATP-dependent DNA helicase RecQ [Emticicia oligotrophica DSM 17448]
gi|387855685|gb|AFK03782.1| ATP-dependent DNA helicase RecQ [Emticicia oligotrophica DSM 17448]
Length = 792
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 110/326 (33%), Positives = 166/326 (50%), Gaps = 44/326 (13%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
++ LK F FR Q I+ + K+ +IMPT S D V+
Sbjct: 10 LKEKLKEIFGFDAFRGEQEPIIHNIVSGKNTFVIMPTGAGKSLCYQLPAMVLDGTAIVIS 69
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
L + +Q++A I +A + T + ++ S KLLY++PE L
Sbjct: 70 PLIALMKNQVDQMSAFGI-----NAQFLNSTLNKSEMTRVKNDVMSGDCKLLYIAPESLT 124
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLT 179
K + K L+ IA+DE HC S WGHDFRP+Y+ + I+ + P++PI+ LT
Sbjct: 125 KEDNLT-----FLKKAKLSFIAVDEAHCISEWGHDFRPEYRRIRGIIDDIDPNLPIIALT 179
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATAT KV D+QK L +E + K+ FNR NL+YE+R K ++K + +A+ +
Sbjct: 180 ATATPKVQQDIQKNLSMEQSHIFKSSFNRKNLYYEIRPKIDSKKQLIKYIAN-----NKG 234
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 281
+SGIIY S K+ E++ L G++ YHA L+++ +IAF
Sbjct: 235 KSGIIYCLSRKKVEEIAGLLNVNGIKALPYHAGLDADTRMKNQDAFLNEECDIIVATIAF 294
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GIDKP+VRFVIH+ KS+E +YQ
Sbjct: 295 GMGIDKPDVRFVIHYDAPKSLEGYYQ 320
>gi|429724940|ref|ZP_19259801.1| ATP-dependent DNA helicase RecQ [Prevotella sp. oral taxon 473 str.
F0040]
gi|429151402|gb|EKX94270.1| ATP-dependent DNA helicase RecQ [Prevotella sp. oral taxon 473 str.
F0040]
Length = 728
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 121/327 (37%), Positives = 165/327 (50%), Gaps = 51/327 (15%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFN 64
LK F FR NQ A I + D ++MPT S + V V+
Sbjct: 11 LKLYFGFETFRNNQEAIIRSLMAGHDVFVLMPTGGGKSICYQLPALLMEGVAIVVSP--- 67
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE--SSSLKLLYVSPEKLAKS 122
L NQ+ A+ +++ L K + + +M + + KLLYVSPE K
Sbjct: 68 LIALMKNQVDAVR-QTRADNSVAHYIYAALTKHEILDIMNDVTTGKTKLLYVSPELFNKD 126
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
SF+ L+ + ++ IA+DE HC S WGHDFRP+Y+ L + VPI+ LTATA
Sbjct: 127 -SFVDFLKTVR----VSFIAVDEAHCISEWGHDFRPEYRKLRPIINEIGQVPIIALTATA 181
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF-RNQ- 240
T KV +D++K L I + + K+ FNRPNL+YEVR K A D RF +N
Sbjct: 182 TDKVRMDIKKNLGIPEALEFKSSFNRPNLYYEVRQKTAK--------VDYDVIRFIKNHP 233
Query: 241 --SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
SGIIY S K E+L E LR + AYHA L++ V +IA
Sbjct: 234 HVSGIIYCLSRKRVEELTEVLRTNDINACAYHAGLDAQVRSNTQDAFLKEDIDVIVATIA 293
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GIDKP+VRFVIH+ + KS+E +YQ
Sbjct: 294 FGMGIDKPDVRFVIHYDIPKSLEGYYQ 320
>gi|227114714|ref|ZP_03828370.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
gi|403060389|ref|YP_006648606.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402807715|gb|AFR05353.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 608
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 105/325 (32%), Positives = 167/325 (51%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q I+ L +D ++IMPT S D + V+
Sbjct: 15 QVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIPALVMDGLTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A ++ A + T ++ ++ + +KLLY++PE+L +
Sbjct: 75 ISLMKDQVDQLQAYGVS-----AACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLT-T 128
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
SF+ L +A IA+DE HC S WGHDFRP+Y+ L +K FP +P + LTATA
Sbjct: 129 DSFLDHLAHWQ----IALIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIALTATA 184
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L ++ ++ + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 185 DETTRNDIVRLLDLQSPLIQISSFDRPNIRYTLVEKFKP------LDQLWMFVQGQ-RGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S ED+ L+ RGL AYHA L++ ++AFG
Sbjct: 238 SGIIYCNSRSRVEDICARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|161486779|ref|NP_807007.2| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|161501914|ref|NP_457793.2| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|417337681|ref|ZP_12119750.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Alachua str. R6-377]
gi|417471048|ref|ZP_12167106.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
gi|353563828|gb|EHC30067.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Alachua str. R6-377]
gi|353623757|gb|EHC72954.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
Length = 614
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 18 AKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVS 77
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 78 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLM 132
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 133 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 187
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 188 TADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 240
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ + ++A
Sbjct: 241 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVA 300
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 301 FGMGINKPNVRFVVHFDIPRNIESYYQ 327
>gi|221069610|ref|ZP_03545715.1| ATP-dependent DNA helicase RecQ [Comamonas testosteroni KF-1]
gi|220714633|gb|EED70001.1| ATP-dependent DNA helicase RecQ [Comamonas testosteroni KF-1]
Length = 636
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 168/326 (51%), Gaps = 36/326 (11%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN---- 64
+S+L++ F FR Q A ++ + DA+++MPT S +V ++ + +
Sbjct: 4 AQSILQAVFGYEQFRGPQQAIVSHVINGGDALVLMPTGGGKSLCYQVPAIARQQLGHGVT 63
Query: 65 -----LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKL 119
L +Q+ A++ A + A + T + +++ L +S + LLY +PE+L
Sbjct: 64 IVVSPLIALMHDQVGALHEAGIS--AAYLNSTLSYDETQEVELRLQSGDITLLYAAPERL 121
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
+ F+ L ++ G L+ AIDE HC S WGHDFRP+Y+ LS+L + DVP + LT
Sbjct: 122 -NTPRFLGLLDDLHAQGKLSLFAIDEAHCVSQWGHDFRPEYRALSVLHQRYADVPRIALT 180
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATA D+ + LQ+E + F+RPN+ Y + A +KD ++L + R
Sbjct: 181 ATADALTRADIIERLQLEAAQHFISSFDRPNIRYRI----AEKKDVSNQLLRFIEREHEG 236
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 281
++G++Y S K E+L + L G+ YHA L ++ +IAF
Sbjct: 237 EAGVVYCQSRKRVEELAQTLVQNGINALPYHAGLPQDMRQNHQDRFLREDGVVMVATIAF 296
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GI+KP+VRFV H + K++E +YQ
Sbjct: 297 GMGINKPDVRFVAHVDMPKNIEGYYQ 322
>gi|332534725|ref|ZP_08410553.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas haloplanktis
ANT/505]
gi|332035812|gb|EGI72296.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas haloplanktis
ANT/505]
Length = 596
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 107/325 (32%), Positives = 170/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
+VLK F ++FR Q A I+ A+ +D+++++PT S + V V+
Sbjct: 6 TVLKQVFGYSEFRDGQKAVIDAAINGQDSLVLLPTGGGKSVCYQIPALVLEGVTIVISPL 65
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + QL A+ + + + +L+ ++ +KLLYV+PEK+ +
Sbjct: 66 ISLMQDQVTQLQALGVKAAYVNNSLAREEQQLVYQQ-----LHQGQIKLLYVAPEKVLQ- 119
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+ F+ +L + ++ AIDE HC S WGHDFRP Y L+ LK F VP++ LTATA
Sbjct: 120 REFLERLSHL----NVSLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFAHVPMMALTATA 175
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFY--EVRIKPAAQKDCLDELADLMSRRFRNQ 240
D+ + L+++ + F+RPN+ Y E + KP Q L L + S Q
Sbjct: 176 DKATRFDIVEQLKLQQPYIHTGSFDRPNIRYTIEEKFKPMVQ--LLRYLKEQKS-----Q 228
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY TS K +D+ E+L + GL +AYHA + + ++AFG
Sbjct: 229 SGIIYCTSRKRVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFG 288
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H+ + KS+E++YQ
Sbjct: 289 MGINKPNVRFVLHYDIPKSIESYYQ 313
>gi|161936203|ref|YP_152887.2| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
Length = 614
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 18 AKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVS 77
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 78 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLM 132
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 133 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 187
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 188 TADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 240
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ + ++A
Sbjct: 241 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVA 300
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 301 FGMGINKPNVRFVVHFDIPRNIESYYQ 327
>gi|16767228|ref|NP_462843.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|168244648|ref|ZP_02669580.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|194447354|ref|YP_002047969.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|374979455|ref|ZP_09720791.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|378447302|ref|YP_005234934.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|378452860|ref|YP_005240220.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|378701824|ref|YP_005183782.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|378986647|ref|YP_005249803.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|378991246|ref|YP_005254410.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|379703206|ref|YP_005244934.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|383498567|ref|YP_005399256.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|386589323|ref|YP_006085723.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|6960244|gb|AAF33434.1| S. typhimurium DNA-dependent ATPase DNA helicase (RECQ)
(SP:P40724); contains similarity to Pfam families PF0057
(HRDC domain, score=130.4, E=3.3e-35, N=1), PF00270
(DEAD/DEAH box helicase, score=121.6, E=1.5e-37, N=1)
and PF00271 (Helicases conserved C-terminal domain,
score=99.8, E=5.3e-26, N=1) [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|16422522|gb|AAL22802.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|194405658|gb|ACF65877.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|205336505|gb|EDZ23269.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|261249081|emb|CBG26942.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267996239|gb|ACY91124.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301160473|emb|CBW20003.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312915076|dbj|BAJ39050.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321225476|gb|EFX50533.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323132305|gb|ADX19735.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|332990793|gb|AEF09776.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|380465388|gb|AFD60791.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|383796367|gb|AFH43449.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
Length = 615
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/326 (31%), Positives = 169/326 (51%), Gaps = 47/326 (14%)
Query: 12 RSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKS 61
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 20 KQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSP 79
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAK 121
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 80 LISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLML 134
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTAT
Sbjct: 135 D-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTAT 189
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRN 239
A D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 190 ADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-RG 242
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 281
+SGIIY S + ED L++RG+ +AYHA LE+ + ++AF
Sbjct: 243 KSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRVDVQEKFQRDDLQIVVATVAF 302
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GI+KPNVRFV+H + +++E++YQ
Sbjct: 303 GMGINKPNVRFVVHFDIPRNIESYYQ 328
>gi|345301389|ref|YP_004830747.1| ATP-dependent DNA helicase RecQ [Enterobacter asburiae LF7a]
gi|345095326|gb|AEN66962.1| ATP-dependent DNA helicase RecQ [Enterobacter asburiae LF7a]
Length = 630
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 167/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL F FRP Q I+ L +D +++MPT S + + V+
Sbjct: 34 AKQVLHETFGYQQFRPGQETIIDTVLGGRDCLVVMPTGGGKSLCYQVPALVLNGLTVVVS 93
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 94 PLISLMKDQVDQLLANGVA-----AACLNSTQTREQQLEVMAGCRTGQIRLLYIAPERLM 148
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP++P + LTA
Sbjct: 149 LD-NFLEHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPELPFMALTA 203
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA LD+ ++L + D + + F+RPN+ Y + + KP LD+L + + R
Sbjct: 204 TADDTTRLDIVRLLGLNDPFIQVSSFDRPNIRYMLMEKFKP------LDQLLRYVQEQ-R 256
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L+NRG +AYHA LE+++ ++A
Sbjct: 257 GKSGIIYCNSRAKVEDTAARLQNRGFSAAAYHAGLENHIRADVQEKFQRDDLQIVVATVA 316
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 317 FGMGINKPNVRFVVHFDIPRNIESYYQ 343
>gi|204930202|ref|ZP_03221179.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|204320606|gb|EDZ05808.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
Length = 615
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 19 AKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVS 78
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 79 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLM 133
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 134 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 188
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 189 TADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 241
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ + ++A
Sbjct: 242 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVA 301
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 302 FGMGINKPNVRFVVHFDIPRNIESYYQ 328
>gi|56461647|ref|YP_156928.1| superfamily II DNA helicase [Idiomarina loihiensis L2TR]
gi|56180657|gb|AAV83379.1| Superfamily II DNA helicase, RecQ [Idiomarina loihiensis L2TR]
Length = 614
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 175/329 (53%), Gaps = 47/329 (14%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSV 58
D ++ L+S F FR Q + A+ +D++++MPT S D + V
Sbjct: 12 DPLKQQLESTFGYHQFRDGQEDIMQAAMQGRDSLVLMPTGGGKSLCYQLPAICGDGLTLV 71
Query: 59 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMT--ESSSLKLLYVSP 116
+ +L + L A++I+ + +G + ++ + M +S +KLLYVSP
Sbjct: 72 ISPLLSLMQDQVEALKALDIS------AATLHSG-VSSQESMATMQGLQSGDIKLLYVSP 124
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
E++ + +F+ +LQ + L IA+DE HC S WGHDFRP+Y L +L+ P+VP +
Sbjct: 125 ERVLQP-TFIERLQTLK----LNFIAVDEAHCISQWGHDFRPEYGKLGVLRNYLPNVPFM 179
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATA + D+ + L + + +V ++ F+RPN+ Y V+ K K D + ++
Sbjct: 180 ALTATADSATQHDIIERLCLREPLVHRSSFDRPNIRYVVQEKYKPLKQVRDYV-----KK 234
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------S 278
+ +GIIY S K+ E+L E L+ G+R + YHA +E + +
Sbjct: 235 QKGAAGIIYCGSRKKTEELSESLQQAGVRAAPYHAGIEHQIKESTLRQFLRDDIDVVVAT 294
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+AFG+GI+KPN+RFVIH + +S+E++YQ
Sbjct: 295 VAFGMGINKPNIRFVIHFDIPRSVESYYQ 323
>gi|422015295|ref|ZP_16361894.1| ATP-dependent DNA helicase RecQ [Providencia burhodogranariea DSM
19968]
gi|414099460|gb|EKT61101.1| ATP-dependent DNA helicase RecQ [Providencia burhodogranariea DSM
19968]
Length = 608
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 109/327 (33%), Positives = 173/327 (52%), Gaps = 51/327 (15%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
S+L S F FRP Q A I L +D++++MPT S D V V+
Sbjct: 15 SILNSTFGYQSFRPGQEAVIRAILDNRDSLVLMPTGGGKSLCYQVPALVKDGVTLVVSPL 74
Query: 63 FNLTDFRPNQL--AAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL IN A L P +++++ +LKLLYV+PE+L
Sbjct: 75 ISLMKDQVDQLRLHGINAACLNSSQT---PQ----EQREVMDSCAQGNLKLLYVAPERLL 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+ F+++L +A +A+DE HC S WGHDFRP+Y+ L L+ FPDVP++ LTA
Sbjct: 128 -TDYFLSQLANWN----IALLAVDEAHCISQWGHDFRPEYRALGQLRQHFPDVPVMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L +++ +V + F+RPN+ Y + + KP L++L + + +
Sbjct: 183 TADETTRADIIRLLALDNPLVQVSSFDRPNIRYTLVEKYKP------LEQLWFFIKAQ-K 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIA 280
++GI+Y S + E+ E L+ RGL V+AYHA L+S ++A
Sbjct: 236 GKAGIVYCNSRNKVEETAERLQKRGLSVAAYHAGLDSQQREWVQDAFLKDNLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+K NVRFV H + +++E +YQ
Sbjct: 296 FGMGINKSNVRFVAHFDIPRNIEAYYQ 322
>gi|209965714|ref|YP_002298629.1| ATP-dependent DNA helicase RecQ [Rhodospirillum centenum SW]
gi|209959180|gb|ACI99816.1| ATP-dependent DNA helicase RecQ [Rhodospirillum centenum SW]
Length = 610
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 108/339 (31%), Positives = 169/339 (49%), Gaps = 53/339 (15%)
Query: 2 LPNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVL 59
LP P D R+VL++ + DFR Q A + + DA+++MPT S ++ +++
Sbjct: 5 LPLTPTPD-ARTVLRNVWGYPDFRGMQAAIVEQVIAGGDALVLMPTGGGKSLCYQIPALV 63
Query: 60 KSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG-------------KLLKKKKICLMTES 106
+ + + + IAL++ + G + L+ ++ C E
Sbjct: 64 RPGVGI-------VVSPLIALMRDQVDALRQLGVRAAYLNSTLDWREALEVERAC---ER 113
Query: 107 SSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166
L LLYV+PE+L + F+ L++ +A A+DE HC S WGHDFRP+Y SIL
Sbjct: 114 GGLDLLYVAPERLVTPR-FLDLLERSR----IALFALDEAHCVSQWGHDFRPEYLQCSIL 168
Query: 167 KTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL 226
FPDVP + LTATA + D+ + L + V A F+RPN+ Y V+ K ++
Sbjct: 169 HERFPDVPRIALTATADAQTRADIVERLGLGGAEVFAASFDRPNITYRVQTKDNERR--- 225
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------- 277
+L D + R +GI+Y S + E + + LR +G+ YHA LE+
Sbjct: 226 -QLLDFIRHRHGEDAGIVYCMSRGKVESVAQWLREQGIDALPYHAGLEAETRQANQDRFI 284
Query: 278 ---------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GIDKPNVRFV+H +S+E +YQ
Sbjct: 285 KAEGVVMVATVAFGMGIDKPNVRFVVHMDPPRSLEAYYQ 323
>gi|417361770|ref|ZP_12135584.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
gi|353583121|gb|EHC43574.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
Length = 609
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 128 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ + ++A
Sbjct: 236 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|345885011|ref|ZP_08836404.1| ATP-dependent DNA helicase RecQ [Prevotella sp. C561]
gi|345042066|gb|EGW46174.1| ATP-dependent DNA helicase RecQ [Prevotella sp. C561]
Length = 727
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 113/320 (35%), Positives = 163/320 (50%), Gaps = 35/320 (10%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-----LTD 67
LK F F+ +Q A I L KD ++MPT S ++ S++ L
Sbjct: 11 LKHYFGFDKFKGDQEAIIRNLLDGKDTFVLMPTGGGKSLCYQLPSLIMEGTAIVVSPLIA 70
Query: 68 FRPNQLAAINIALLKKDAIIIMPTGKLLKKK--KICLMTESSSLKLLYVSPEKLAKSKSF 125
NQ+ IN + ++D I L K + ++ S KLLYV+PE L K ++
Sbjct: 71 LMKNQVDVIN-GISEEDGIAHYLNSSLKKGEIDQVRADIVSGRTKLLYVAPESLNKEENV 129
Query: 126 MTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTK 185
+ K+ ++ AIDE HC S WGHDFRP+Y+ + P++ LTATAT K
Sbjct: 130 -----EFLKSVKISFYAIDEAHCISEWGHDFRPEYRKIRCAIESIGTAPVIALTATATDK 184
Query: 186 VMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIY 245
V D+ + L IEDC K+ FNRPNL+YEVR P D ++ ++ +SGIIY
Sbjct: 185 VRTDIVRSLGIEDCAEFKSSFNRPNLYYEVR--PKKSDDDTNKQIIKFIKQHAGKSGIIY 242
Query: 246 TTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDK 287
S K+ E+L L+ ++ + YHA L+S +IAFG+GIDK
Sbjct: 243 CLSRKKVEELAAILKANDIKAAPYHAGLDSETRSKAQDDFLMEELDIIVATIAFGMGIDK 302
Query: 288 PNVRFVIHHCLSKSMENFYQ 307
P+VRFVIH+ + KS+E +YQ
Sbjct: 303 PDVRFVIHYDIPKSLEGYYQ 322
>gi|194469151|ref|ZP_03075135.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|416649609|ref|ZP_11809981.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|418492957|ref|ZP_13059431.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|418496841|ref|ZP_13063270.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|418499706|ref|ZP_13066110.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|418506075|ref|ZP_13072415.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|418526484|ref|ZP_13092460.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|194455515|gb|EDX44354.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|366054478|gb|EHN18832.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|366056408|gb|EHN20732.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|366066485|gb|EHN30652.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|366070443|gb|EHN34553.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|366828694|gb|EHN55575.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|372205603|gb|EHP19111.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
Length = 609
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 128 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ + ++A
Sbjct: 236 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|437817959|ref|ZP_20842843.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|435308090|gb|ELO83099.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
Length = 609
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 128 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ + ++A
Sbjct: 236 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQCDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|374385551|ref|ZP_09643054.1| ATP-dependent DNA helicase RecQ [Odoribacter laneus YIT 12061]
gi|373225253|gb|EHP47587.1| ATP-dependent DNA helicase RecQ [Odoribacter laneus YIT 12061]
Length = 735
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 113/327 (34%), Positives = 164/327 (50%), Gaps = 52/327 (15%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFN 64
LK F +F+ NQ A I L K+ ++MPT S D V+
Sbjct: 22 LKEYFGFDNFKGNQEAIIRNVLAGKNTFVLMPTGGGKSLCYQLPALILDGTAIVISPLIA 81
Query: 65 LTDFRPNQL----AAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
L + + + AA +A + + ++LK K+ L KLLYV+PE L
Sbjct: 82 LMKNQVDAMRSFSAAEGVAHFLNSS---LTKNEILKVKEDIL---EGKTKLLYVAPESLT 135
Query: 121 KSKS--FMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGL 178
K + F+ K++ ++ A+DE HC S WGHDFR +Y+ + + PI+ L
Sbjct: 136 KDSNVEFLKKIK-------ISFFAVDEAHCISEWGHDFRTEYRKIRPIVEQIGKAPIIAL 188
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFR 238
TATAT KV D+QK L + D V K+ FNRPNL+YEVR K KD + ++
Sbjct: 189 TATATPKVQHDIQKNLDMLDAEVFKSSFNRPNLYYEVRPKNDPTKDIIK-----FIKKHE 243
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S K+ E+L E L G++ + YHA +++ +IA
Sbjct: 244 GKSGIIYCLSRKKVEELAEVLCINGIKAAPYHAGMDATTRSANQDKFLMEEVDVIVATIA 303
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GIDKP+VRFVIH+ + KS+E +YQ
Sbjct: 304 FGMGIDKPDVRFVIHYDIPKSLEGYYQ 330
>gi|62182427|ref|YP_218844.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|168263151|ref|ZP_02685124.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168822671|ref|ZP_02834671.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194446579|ref|YP_002043188.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|213427355|ref|ZP_03360105.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213649567|ref|ZP_03379620.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|224585773|ref|YP_002639572.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|289828697|ref|ZP_06546492.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|375003823|ref|ZP_09728161.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|375116774|ref|ZP_09761944.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|378961517|ref|YP_005219003.1| ATP-dependent DNA helicase recQ [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|409247635|ref|YP_006888331.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|416529343|ref|ZP_11744310.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|416540118|ref|ZP_11750292.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|416548851|ref|ZP_11755065.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|418762505|ref|ZP_13318633.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|418764312|ref|ZP_13320412.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|418773202|ref|ZP_13329193.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|418777929|ref|ZP_13333850.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|418779076|ref|ZP_13334982.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|418785638|ref|ZP_13341468.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|418791453|ref|ZP_13347215.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|418791792|ref|ZP_13347544.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|418797728|ref|ZP_13353411.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|418801455|ref|ZP_13357089.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|418807130|ref|ZP_13362696.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|418811291|ref|ZP_13366825.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|418826243|ref|ZP_13381486.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|418829058|ref|ZP_13384050.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|418836055|ref|ZP_13390945.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|418842971|ref|ZP_13397777.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|418847517|ref|ZP_13402271.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|418851574|ref|ZP_13406284.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|418855043|ref|ZP_13409705.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|418859144|ref|ZP_13413751.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|418862341|ref|ZP_13416883.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|418865911|ref|ZP_13420377.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|419788039|ref|ZP_14313738.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|419792725|ref|ZP_14318356.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|62130060|gb|AAX67763.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|194405242|gb|ACF65464.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|205340978|gb|EDZ27742.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205348083|gb|EDZ34714.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|224470301|gb|ACN48131.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|320088369|emb|CBY98129.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|322716920|gb|EFZ08491.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|353074144|gb|EHB39906.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|363552625|gb|EHL36909.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|363559478|gb|EHL43644.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|363570670|gb|EHL54599.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|374355389|gb|AEZ47150.1| ATP-dependent DNA helicase recQ [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|392618248|gb|EIX00655.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|392618380|gb|EIX00781.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|392730245|gb|EIZ87491.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|392736295|gb|EIZ93459.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|392742663|gb|EIZ99749.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|392743428|gb|EJA00500.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|392751538|gb|EJA08487.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|392753920|gb|EJA10840.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|392755163|gb|EJA12077.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|392768343|gb|EJA25099.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|392769553|gb|EJA26284.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|392779635|gb|EJA36299.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|392780048|gb|EJA36707.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|392780419|gb|EJA37072.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|392802536|gb|EJA58748.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|392805635|gb|EJA61758.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|392806235|gb|EJA62346.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|392807530|gb|EJA63600.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|392808110|gb|EJA64163.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|392817089|gb|EJA73006.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|392822614|gb|EJA78420.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|392830940|gb|EJA86582.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|392836344|gb|EJA91928.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|392840884|gb|EJA96417.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
Length = 615
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 19 AKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVS 78
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 79 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLM 133
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 134 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 188
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 189 TADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 241
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ + ++A
Sbjct: 242 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVA 301
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 302 FGMGINKPNVRFVVHFDIPRNIESYYQ 328
>gi|381403551|ref|ZP_09928235.1| ATP-dependent DNA helicase RecQ [Pantoea sp. Sc1]
gi|380736750|gb|EIB97813.1| ATP-dependent DNA helicase RecQ [Pantoea sp. Sc1]
Length = 608
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 167/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS----VLK 60
+ VL+ F FRP Q IN AL +D +++MPT Y VR V+
Sbjct: 13 AQQVLQDTFGYQQFRPGQQTIINQALSGRDCLVVMPTGGGKSLCYQIPALVREGLTLVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T +++ + + +KLLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTMTREQQQTVMADCRTGRVKLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP+VP++ LTA
Sbjct: 128 MD-NFLDNLAHWQPV----MLAVDEAHCISQWGHDFRPEYGALGRLRERFPEVPVMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ +L ++D ++ + F+RPN+ Y + + KP D+L + + R
Sbjct: 183 TADETTRNDIVNLLHMQDPLIQISSFDRPNIRYTLVEKFKPT------DQLLRYVQDQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIA 280
+ GIIY S + ED L++RGL V AYHA ++S ++A
Sbjct: 236 GKCGIIYCNSRAKVEDTAARLQSRGLSVGAYHAGIDSEQRARVQEAFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|315127615|ref|YP_004069618.1| ATP-dependent DNA helicase [Pseudoalteromonas sp. SM9913]
gi|315016129|gb|ADT69467.1| ATP-dependent DNA helicase [Pseudoalteromonas sp. SM9913]
Length = 607
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 106/325 (32%), Positives = 170/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
+VLK F ++FR Q A I+ A+ +D+++++PT S + V V+
Sbjct: 17 TVLKQVFGYSEFRDGQSAVIDAAINGQDSLVLLPTGGGKSVCYQIPALVLEGVTIVISPL 76
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + QL A+ + + + +L+ ++ +KLLYV+PEK+ +
Sbjct: 77 ISLMQDQVTQLQALGVKAAYVNNSLAREEQQLVYQQ-----LHQGLIKLLYVAPEKVLQ- 130
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+ F+ +L + ++ AIDE HC S WGHDFRP Y L+ LK F VP++ LTATA
Sbjct: 131 RDFLERLSHL----NVSLFAIDEAHCVSHWGHDFRPHYFRLNELKQRFAHVPMMALTATA 186
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFY--EVRIKPAAQKDCLDELADLMSRRFRNQ 240
D+ + L+++ + F+RPN+ Y E + KP Q L + + +NQ
Sbjct: 187 DKATRFDIVEQLKLQQPYIHTGSFDRPNIRYTIEEKFKPMVQ------LLRYLKEQ-KNQ 239
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY TS K +D+ E+L + GL +AYHA + + ++AFG
Sbjct: 240 SGIIYCTSRKRVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFG 299
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H+ + KS+E +YQ
Sbjct: 300 MGINKPNVRFVLHYDIPKSIEAYYQ 324
>gi|197364742|ref|YP_002144379.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56130069|gb|AAV79575.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197096219|emb|CAR61816.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 609
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 128 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ + ++A
Sbjct: 236 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|200386748|ref|ZP_03213360.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205358016|ref|ZP_02574990.2| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|419729880|ref|ZP_14256835.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|419733429|ref|ZP_14260327.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|419739272|ref|ZP_14266022.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|419744302|ref|ZP_14270957.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|419747546|ref|ZP_14274055.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|421568554|ref|ZP_16014270.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|421573152|ref|ZP_16018793.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|421577825|ref|ZP_16023409.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|421585417|ref|ZP_16030915.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|422028195|ref|ZP_16374511.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|422033246|ref|ZP_16379328.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|427556417|ref|ZP_18929834.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|427573922|ref|ZP_18934425.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|427595457|ref|ZP_18939339.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|427620224|ref|ZP_18944221.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|427643553|ref|ZP_18949109.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|427658213|ref|ZP_18953833.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|427663471|ref|ZP_18958735.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|427680435|ref|ZP_18963628.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|427801523|ref|ZP_18969078.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
gi|19859341|sp|P40724.3|RECQ_SALTY RecName: Full=ATP-dependent DNA helicase RecQ
gi|199603846|gb|EDZ02391.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205328138|gb|EDZ14902.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|381295573|gb|EIC36683.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|381299619|gb|EIC40690.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|381300148|gb|EIC41212.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|381309157|gb|EIC49998.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|381316946|gb|EIC57683.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|402526073|gb|EJW33352.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|402529061|gb|EJW36309.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|402529843|gb|EJW37071.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|402530062|gb|EJW37285.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|414012332|gb|EKS96254.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|414013685|gb|EKS97561.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|414013736|gb|EKS97610.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|414027502|gb|EKT10730.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|414028451|gb|EKT11639.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|414030693|gb|EKT13785.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|414041738|gb|EKT24296.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|414042549|gb|EKT25086.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|414046946|gb|EKT29251.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|414055658|gb|EKT37543.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|414061964|gb|EKT43335.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
Length = 609
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 128 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ + ++A
Sbjct: 236 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRVDVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|332707801|ref|ZP_08427828.1| ATP-dependent DNA helicase RecQ [Moorea producens 3L]
gi|332353504|gb|EGJ33017.1| ATP-dependent DNA helicase RecQ [Moorea producens 3L]
Length = 709
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 109/331 (32%), Positives = 171/331 (51%), Gaps = 33/331 (9%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN- 64
S + LK F FRP Q I AL +D +IIMPT S ++ ++LK
Sbjct: 4 SPSLEHALKHFFGHDCFRPGQQQIIEEALQNQDLLIIMPTGGGKSLCYQLPALLKPGLTV 63
Query: 65 ----LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
L +Q+ ++ + I + + ++ ++ ++ +KLLYVSPE+L
Sbjct: 64 VVSPLISLMQDQVTSLEDNGIGATFINSTLSFQQMRSREAAIL--EGKIKLLYVSPERLL 121
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
++ F+ L ++ + AIDE HC S WGHDFRPDY+ L +L+ +P+ +L LTA
Sbjct: 122 -AEQFIPFLDRVRSQIGIPTFAIDEAHCVSQWGHDFRPDYRQLKLLRNRYPNSSVLALTA 180
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TAT +V D+ + L++ V A FNRPNL+Y+V+ K Q+ +L L R
Sbjct: 181 TATNRVQQDIIQQLELRQPKVHIASFNRPNLYYDVQPK---QRQSYQQL--LKQIRSHQG 235
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGI+Y TS + E++ L+N G+ YH + ++AFG
Sbjct: 236 SGIVYCTSRRSVEEVAFRLQNDGISALPYHGGMTDKARATNQNRFIRDDVRVIVATVAFG 295
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+GI+KP+VRFVIH+ L +++E++YQ S G
Sbjct: 296 MGINKPDVRFVIHYDLPRNIESYYQESGRAG 326
>gi|325855159|ref|ZP_08171782.1| ATP-dependent DNA helicase RecQ [Prevotella denticola CRIS 18C-A]
gi|325483896|gb|EGC86840.1| ATP-dependent DNA helicase RecQ [Prevotella denticola CRIS 18C-A]
Length = 727
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 114/325 (35%), Positives = 162/325 (49%), Gaps = 45/325 (13%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFN 64
LK F F+ NQ A I L D ++MPT S + V+
Sbjct: 11 LKHYFGFDKFKGNQEAIIRNLLAGHDTFVLMPTGGGKSLCYQLPALIMEGTAIVISP--- 67
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE--SSSLKLLYVSPEKLAKS 122
L NQ+ IN + ++D + L K + + + S KLLYV+PE L K
Sbjct: 68 LIALMKNQVDVIN-GISEEDGVAHYLNSSLKKAEVDQVRADIVSGHTKLLYVAPESLNKE 126
Query: 123 K--SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+ +F+ ++ ++ AIDE HC S WGHDFRP+Y+ + P++ LTA
Sbjct: 127 ENIAFLRSVK-------ISFYAIDEAHCISEWGHDFRPEYRKIRHAIDAIGVAPVIALTA 179
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TAT KV D+ + L IEDCV K+ FNRPNL+YEVR K + D D ++ +
Sbjct: 180 TATDKVRTDIVRSLGIEDCVEFKSSFNRPNLYYEVRAKKS--DDDTDRQIIKFIKQHAGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282
SGIIY S K+ E+L L+ ++ + YHA L+S +IAFG
Sbjct: 238 SGIIYCLSRKKVEELAAVLQANDIKAAPYHAGLDSETRSRTQDDFLMEELDVIVATIAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GIDKP+VRFVIH+ + KS+E +YQ
Sbjct: 298 MGIDKPDVRFVIHYDIPKSLEGYYQ 322
>gi|168238410|ref|ZP_02663468.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197288782|gb|EDY28157.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
Length = 615
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 19 AKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVS 78
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 79 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLM 133
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 134 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 188
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 189 TADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 241
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ + ++A
Sbjct: 242 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVA 301
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 302 FGMGINKPNVRFVVHFDIPRNIESYYQ 328
>gi|407790669|ref|ZP_11137761.1| ATP-dependent DNA helicase RecQ [Gallaecimonas xiamenensis 3-C-1]
gi|407203006|gb|EKE72994.1| ATP-dependent DNA helicase RecQ [Gallaecimonas xiamenensis 3-C-1]
Length = 607
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 105/321 (32%), Positives = 157/321 (48%), Gaps = 81/321 (25%)
Query: 56 RSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG----------------------- 92
+SVL S F FRP Q A ++ + +DA++IMPTG
Sbjct: 16 QSVLASVFGYDQFRPGQQAVVDAVVAGRDALVIMPTGGGKSLCYQVPALVLPGTAIVISP 75
Query: 93 --KLLKKKKICLMT------------------------ESSSLKLLYVSPEKLAKSKSFM 126
L+K + L+ L LLYVSPE+L++ F
Sbjct: 76 LISLMKDQVDQLLAMGVRAAYLNSALPRDQQWQVLNQLHHGELDLLYVSPERLSQP-DFQ 134
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186
+L ++ ++ A+DE HC SSWGHDFRP+Y L LK FP VP++ LTATA
Sbjct: 135 QRLLEI----PISLFAVDEAHCISSWGHDFRPEYMALGQLKRHFPQVPLMALTATADKAT 190
Query: 187 MLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQSGII 244
D+Q+ L ++D + F+RPN+ Y V + KP +++L + + R QSGII
Sbjct: 191 RQDIQQRLGLDDPYFNLSSFDRPNIRYLVVEKFKP------INQLLQYLEGQ-RGQSGII 243
Query: 245 YTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGID 286
Y S K +D+ ++LR +G + YHA L ++ ++AFG+GI+
Sbjct: 244 YAGSRKRVDDIAQKLRGQGFNAAGYHAGLSNDERQFVQDAFQKDEVDIVVATVAFGMGIN 303
Query: 287 KPNVRFVIHHCLSKSMENFYQ 307
KP+VRFV H L K++E++YQ
Sbjct: 304 KPDVRFVAHFDLPKNIESYYQ 324
>gi|313204327|ref|YP_004042984.1| ATP-dependent DNA helicase recq [Paludibacter propionicigenes WB4]
gi|312443643|gb|ADQ79999.1| ATP-dependent DNA helicase RecQ [Paludibacter propionicigenes WB4]
Length = 730
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 116/323 (35%), Positives = 167/323 (51%), Gaps = 43/323 (13%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-----LTD 67
LK F +F+ NQ A I L KD ++MPT S ++ S+L L
Sbjct: 11 LKKNFGFDNFKGNQEAIIQNVLDGKDTFVLMPTGGGKSLCYQLPSLLMEGTAIVISPLIA 70
Query: 68 FRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE--SSSLKLLYVSPEKLAKSKS- 124
NQ+ A+ ++D I L K+ + + S KLLYV+PE L K ++
Sbjct: 71 LMKNQVDAMR-NFSEEDGIAHFINSSLTKQAIDQVKNDILSGKTKLLYVAPESLTKEENI 129
Query: 125 -FMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
F+ +L+ ++ A+DE HC S WGHDFRP+Y+ + + P++ LTATAT
Sbjct: 130 EFLKQLK-------ISFYAVDEAHCISEWGHDFRPEYRRIRPIINDIGAAPLIALTATAT 182
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKP-AAQKDCLDELADLMSRRFRNQSG 242
KV D+QK L + + V K+ FNR NL+YEVR K KD + + R +SG
Sbjct: 183 PKVQHDIQKNLGMLNATVFKSSFNRANLYYEVRPKTNNVDKDIIKYI-----RSQAGKSG 237
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 284
IIY S K+ E+L E LR G+ V YHA ++S V +IAFG+G
Sbjct: 238 IIYCLSRKKVEELSETLRMNGISVLPYHAGMDSAVRSQNQDSFLMEKAEVIVATIAFGMG 297
Query: 285 IDKPNVRFVIHHCLSKSMENFYQ 307
IDKP+VR+V+H+ + KS+E +YQ
Sbjct: 298 IDKPDVRYVLHYDMPKSLEGYYQ 320
>gi|168233892|ref|ZP_02658950.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|416427302|ref|ZP_11693481.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|416434870|ref|ZP_11697891.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|416436865|ref|ZP_11698533.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|416447482|ref|ZP_11705890.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|416454710|ref|ZP_11710431.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|416457489|ref|ZP_11712204.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|416464152|ref|ZP_11716248.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|416475377|ref|ZP_11720600.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|416489276|ref|ZP_11726106.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|416496572|ref|ZP_11729198.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|416507871|ref|ZP_11735697.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|416517693|ref|ZP_11739594.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|416547105|ref|ZP_11754394.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|416562017|ref|ZP_11761863.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|416572797|ref|ZP_11767461.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|416574873|ref|ZP_11768042.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|416587458|ref|ZP_11776068.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|416594725|ref|ZP_11780542.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|416596084|ref|ZP_11781178.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|416606167|ref|ZP_11787562.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|416613349|ref|ZP_11791983.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|416624004|ref|ZP_11797748.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|416634922|ref|ZP_11802814.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|416639346|ref|ZP_11804480.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|416660772|ref|ZP_11815207.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|416668613|ref|ZP_11819000.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|416678400|ref|ZP_11822627.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|416689502|ref|ZP_11825608.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|416704588|ref|ZP_11830342.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|416710675|ref|ZP_11834703.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|416717787|ref|ZP_11840028.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|416723406|ref|ZP_11844118.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|416728964|ref|ZP_11847700.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|416742430|ref|ZP_11855812.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|416748208|ref|ZP_11858599.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|416759473|ref|ZP_11864304.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|416764210|ref|ZP_11867845.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|416772766|ref|ZP_11873465.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|418486071|ref|ZP_13055045.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|418507163|ref|ZP_13073488.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|205332102|gb|EDZ18866.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|322613033|gb|EFY09984.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322617379|gb|EFY14279.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322625629|gb|EFY22451.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322627052|gb|EFY23845.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322631232|gb|EFY27995.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322638265|gb|EFY34964.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322642799|gb|EFY39386.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322646959|gb|EFY43461.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322650346|gb|EFY46759.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322656363|gb|EFY52657.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322657588|gb|EFY53858.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322665999|gb|EFY62180.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322666738|gb|EFY62915.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322671019|gb|EFY67149.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322679274|gb|EFY75326.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322681678|gb|EFY77705.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322685995|gb|EFY81983.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323192621|gb|EFZ77849.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323196487|gb|EFZ81637.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323203761|gb|EFZ88782.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323210733|gb|EFZ95609.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323215901|gb|EGA00634.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323221394|gb|EGA05812.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323227588|gb|EGA11744.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323231773|gb|EGA15884.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323236188|gb|EGA20265.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323239575|gb|EGA23623.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323244329|gb|EGA28337.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323249574|gb|EGA33486.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323250334|gb|EGA34220.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323256541|gb|EGA40272.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323259761|gb|EGA43394.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323265169|gb|EGA48667.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323268402|gb|EGA51874.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|363553085|gb|EHL37357.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|363559660|gb|EHL43813.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363572666|gb|EHL56556.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|363573470|gb|EHL57350.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|366054404|gb|EHN18759.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|366081731|gb|EHN45672.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
Length = 615
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 19 AKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVS 78
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 79 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLM 133
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 134 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 188
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 189 TADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 241
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ + ++A
Sbjct: 242 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVA 301
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 302 FGMGINKPNVRFVVHFDIPRNIESYYQ 328
>gi|381188984|ref|ZP_09896542.1| ATP-dependent DNA helicase RecQ [Flavobacterium frigoris PS1]
gi|379649120|gb|EIA07697.1| ATP-dependent DNA helicase RecQ [Flavobacterium frigoris PS1]
Length = 704
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 155/323 (47%), Gaps = 79/323 (24%)
Query: 52 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK------------------ 93
S ++ LK F FR NQ IN L +D + IMPTG
Sbjct: 4 SQKLHETLKENFGFEKFRINQEQVINAILSGQDTLAIMPTGGGKSICFQLPALLFPGITI 63
Query: 94 -------LLKKK---------KICLMTESSS---------------LKLLYVSPEKLAKS 122
L+K + + C + S + +KL+YV+PE L
Sbjct: 64 VISPLIALMKDQVDSLKANGIQACYINSSQTDAEQQSHIQNLINNKVKLVYVAPESL--- 120
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+ L+ ++ L+ IAIDE HC SSWGHDFRP Y L LK FP PIL LTATA
Sbjct: 121 ----SYLENVFSQITLSLIAIDEAHCISSWGHDFRPAYTNLGYLKKRFPSTPILALTATA 176
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSG 242
D+ K L +++ + F+R NL EVR PA D + ++ D +S + R +SG
Sbjct: 177 DKATRKDISKQLNLKEPKSFISSFDRKNLSLEVR--PAL--DRVKQIVDFISAKPR-ESG 231
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 284
I+Y S K E+L E+L+ G+ AYHA L+S V +IAFG+G
Sbjct: 232 IVYCLSRKTTEELAEKLQKAGINAKAYHAGLDSTVRSKTQDDFINDDCQVVCATIAFGMG 291
Query: 285 IDKPNVRFVIHHCLSKSMENFYQ 307
IDK NVR+VIH+ L K++E +YQ
Sbjct: 292 IDKSNVRWVIHYNLPKNIEGYYQ 314
>gi|213162090|ref|ZP_03347800.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
Length = 431
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 19 AKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVS 78
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 79 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLM 133
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 134 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 188
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 189 TADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 241
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ + ++A
Sbjct: 242 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVA 301
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 302 FGMGINKPNVRFVVHFDIPRNIESYYQ 328
>gi|163787884|ref|ZP_02182330.1| putative ATP-dependent DNA helicase [Flavobacteriales bacterium
ALC-1]
gi|159876204|gb|EDP70262.1| putative ATP-dependent DNA helicase [Flavobacteriales bacterium
ALC-1]
Length = 733
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 118/327 (36%), Positives = 172/327 (52%), Gaps = 50/327 (15%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-----LTD 67
LK F + F+ Q I + + +IMPT S ++ +++K L
Sbjct: 12 LKKYFGFSAFKGLQEEVIKNVVAGNNTFVIMPTGGGKSLCYQLPALIKEGTAIVVSPLIA 71
Query: 68 FRPNQLAAINIALLKKDAIIIMPTGKLLKK--KKICLMTESSSLKLLYVSPEKLAKSK-- 123
NQ+ AI A+ D + + L K K++ + KLLYV+PE L K +
Sbjct: 72 LMKNQVDAIR-AVSDHDGVAHVLNSSLNKTEVKRVKDDIVNGITKLLYVAPESLTKEEYV 130
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLTATA 182
F+ ++ ++ +A+DE HC S WGHDFRP+Y+ L +I+K + D+PI+GLTATA
Sbjct: 131 EFLRTVK-------ISFMAVDEAHCISEWGHDFRPEYRNLKTIIKRIGDDIPIVGLTATA 183
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ-- 240
T KV D+ K L + + V KA FNRPNL+YEVR K AD++ RF Q
Sbjct: 184 TPKVQEDILKSLGMPNAVTFKASFNRPNLYYEVRPKTKNVD------ADII--RFVKQND 235
Query: 241 --SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
SGI+Y S K E+L + L+ G++ YHA L++ +IA
Sbjct: 236 GKSGIVYCLSRKRVEELAQVLQVNGVKAVPYHAGLDAKTRVKHQDMFLMEDTDVVVATIA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GIDKP+VRFVIHH + KS+E++YQ
Sbjct: 296 FGMGIDKPDVRFVIHHDIPKSIESYYQ 322
>gi|452122263|ref|YP_007472511.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
gi|451911267|gb|AGF83073.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
Length = 609
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 128 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ + ++A
Sbjct: 236 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|161617078|ref|YP_001591043.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|195874257|ref|ZP_02701463.2| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|417329973|ref|ZP_12114685.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Adelaide str. A4-669]
gi|417344998|ref|ZP_12125224.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
gi|417353823|ref|ZP_12130421.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Gaminara str. A4-567]
gi|417369413|ref|ZP_12140610.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Hvittingfoss str. A4-620]
gi|417387010|ref|ZP_12151555.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Johannesburg str. S5-703]
gi|417437013|ref|ZP_12161716.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Mississippi str. A4-633]
gi|417477588|ref|ZP_12171587.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Rubislaw str. A4-653]
gi|417514692|ref|ZP_12178426.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Senftenberg str. A4-543]
gi|417521684|ref|ZP_12183331.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
gi|417535132|ref|ZP_12188708.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Urbana str. R8-2977]
gi|418818528|ref|ZP_13373999.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|418821071|ref|ZP_13376497.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|421882876|ref|ZP_16314125.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|25290797|pir||AH0917 ATP-dependent DNA helicase (EC 3.6.1.-) [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16504479|emb|CAD07934.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29139300|gb|AAO70867.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|161366442|gb|ABX70210.1| hypothetical protein SPAB_04911 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|195629971|gb|EDX48631.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|353563441|gb|EHC29792.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Adelaide str. A4-669]
gi|353563459|gb|EHC29807.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Gaminara str. A4-567]
gi|353584285|gb|EHC44436.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Hvittingfoss str. A4-620]
gi|353601643|gb|EHC57226.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Johannesburg str. S5-703]
gi|353613150|gb|EHC65322.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Mississippi str. A4-633]
gi|353633055|gb|EHC79959.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Senftenberg str. A4-543]
gi|353637613|gb|EHC83386.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Rubislaw str. A4-653]
gi|353640818|gb|EHC85699.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
gi|353657336|gb|EHC97802.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Urbana str. R8-2977]
gi|357953490|gb|EHJ80012.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
gi|379987516|emb|CCF86398.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|392785390|gb|EJA41969.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|392791354|gb|EJA47842.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
Length = 609
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 128 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ + ++A
Sbjct: 236 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|320539379|ref|ZP_08039048.1| ATP-dependent DNA helicase [Serratia symbiotica str. Tucson]
gi|320030504|gb|EFW12514.1| ATP-dependent DNA helicase [Serratia symbiotica str. Tucson]
Length = 618
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 108/324 (33%), Positives = 159/324 (49%), Gaps = 83/324 (25%)
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-----------------LLK 96
RV VL+ F FRP Q A IN A+ +D +++MPTG L+
Sbjct: 20 RVTQVLRDTFGYQQFRPGQQAIINAAIEGQDCLVVMPTGGGKSLCYQIPALVMDGLTLVV 79
Query: 97 KKKICLMTE--------------------------------SSSLKLLYVSPEKLAKSKS 124
I LM + S +KLLY++PE+L S
Sbjct: 80 SPLISLMKDQVDQLLAYGVSAACYNSTQTREQQLAAMAGCRSGQIKLLYIAPERLMMD-S 138
Query: 125 FMTKLQKMYKAGCLARI-AIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183
F+ L + C I A+DE HC S WGHDFRP+Y+ L LK FP +P++ LTATA
Sbjct: 139 FLDSLGR-----CPPVILAVDEAHCISQWGHDFRPEYRALGQLKQRFPAMPVIALTATAD 193
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQS 241
D+ ++L + +V + F+RPN+ Y + + KP LD+L + + R +S
Sbjct: 194 ESTRGDIVRLLALHKPLVQVSSFDRPNIRYTLVEKFKP------LDQLWHFVQGQ-RGKS 246
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGL 283
GIIY S + ED L++RGL V AYHA L+++ ++AFG+
Sbjct: 247 GIIYCNSRAKVEDTTARLQSRGLSVGAYHAGLDNDRRAQVQEAFQRDDLQVVVATVAFGM 306
Query: 284 GIDKPNVRFVIHHCLSKSMENFYQ 307
GI+KPNVRFV+H + +++E++YQ
Sbjct: 307 GINKPNVRFVVHFDIPRNIESYYQ 330
>gi|261823379|ref|YP_003261485.1| ATP-dependent DNA helicase RecQ [Pectobacterium wasabiae WPP163]
gi|261607392|gb|ACX89878.1| ATP-dependent DNA helicase RecQ [Pectobacterium wasabiae WPP163]
gi|385873847|gb|AFI92367.1| ATP-dependent DNA helicase RecQ [Pectobacterium sp. SCC3193]
Length = 608
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/325 (32%), Positives = 167/325 (51%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q I+ L +D ++IMPT S D + V+
Sbjct: 15 QVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIPALVMDGLTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A ++ A + T ++ ++ + +KLLY++PE+L +
Sbjct: 75 ISLMKDQVDQLQAYGVS-----AACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLT-T 128
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
SF+ L ++ IA+DE HC S WGHDFRP+Y+ L +K FP +P + LTATA
Sbjct: 129 DSFLDHLAHWQ----ISLIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIALTATA 184
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L ++ ++ + F+RPN+ Y + + KP LD+L + + R +
Sbjct: 185 DETTRNDIVRLLDLQSPLIQISSFDRPNIRYTLVEKFKP------LDQLWMFVQGQ-RGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S ED+ L+ RGL AYHA L++ ++AFG
Sbjct: 238 SGIIYCNSRSRVEDISARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|206578880|ref|YP_002241119.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae 342]
gi|206567938|gb|ACI09714.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae 342]
Length = 608
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 167/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q I L +D +++MPT S + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVMGGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T +++++ S ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQQEVMAGCRSGQVRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L LA +A+DE HC S WGHDFRP+Y L L+ P +P + LTA
Sbjct: 128 LD-NFLEHLANWN----LAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPQIPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRYMLMEKFKP------LDQLMRYVQDQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ V ++A
Sbjct: 236 GKSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENAVRADVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|406595136|ref|YP_006746266.1| ATP-dependent DNA helicase [Alteromonas macleodii ATCC 27126]
gi|406372457|gb|AFS35712.1| ATP-dependent DNA helicase [Alteromonas macleodii ATCC 27126]
Length = 613
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 108/333 (32%), Positives = 169/333 (50%), Gaps = 47/333 (14%)
Query: 6 PWSDRVRS---VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVR 56
P + RV++ VLK F FR Q I+ KDA++++PT Y VR
Sbjct: 12 PETQRVKTPETVLKDVFGYDAFRDGQGEVIHQVCEGKDALVLLPTGGGKSLCYQIPALVR 71
Query: 57 S----VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLL 112
V+ +L + QL A+ + A + T + ++ +I ++ L LL
Sbjct: 72 QGTAIVVSPLISLMQDQVEQLKALGVK-----AAYLNSTLEADEQARINDALQAGKLDLL 126
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
YVSPE+L Q+ +A AIDE HC S WGHDFR DY+ L +K+ FP
Sbjct: 127 YVSPERL-----MQYYFQQSLAHADIALFAIDEAHCVSHWGHDFRQDYRALGQIKSRFPS 181
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
+P++GLTATA + D+ L + + +V K F+RPN+ Y V K A D++
Sbjct: 182 IPVIGLTATADSATQADILTQLNLNNPLVYKGSFDRPNIRYRVMSKYKA----FDQVVAY 237
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
+ + + SGIIY S + +DL +L +G R +AYHA ++++
Sbjct: 238 VKQ--QEGSGIIYCNSRAKVDDLHAKLFRQGFRCAAYHAGMDNDERELVQRQFLNDKIDI 295
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+K NVR+V+HH + +S+E++YQ
Sbjct: 296 VVATVAFGMGINKSNVRYVVHHDVPRSVESYYQ 328
>gi|290513154|ref|ZP_06552516.1| ATP-dependent DNA helicase RecQ [Klebsiella sp. 1_1_55]
gi|289774365|gb|EFD82371.1| ATP-dependent DNA helicase RecQ [Klebsiella sp. 1_1_55]
Length = 618
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 167/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q I L +D +++MPT S + V+
Sbjct: 23 AKQVLQETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVMGGLTVVVS 82
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T +++++ S ++LLY++PE+L
Sbjct: 83 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQQEVMAGCRSGQVRLLYIAPERLM 137
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L LA +A+DE HC S WGHDFRP+Y L L+ P +P + LTA
Sbjct: 138 LD-NFLEHLANWN----LAMLAVDEAHCISQWGHDFRPEYAALGQLRQRLPQIPFMALTA 192
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 193 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRYMLMEKFKP------LDQLMRYVQDQ-R 245
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ V ++A
Sbjct: 246 GKSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENAVRADVQEKFQRDDLQIVVATVA 305
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 306 FGMGINKPNVRFVVHFDIPRNIESYYQ 332
>gi|417377000|ref|ZP_12146033.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Inverness str. R8-3668]
gi|353591293|gb|EHC49598.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Inverness str. R8-3668]
Length = 609
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 128 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ + ++A
Sbjct: 236 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>gi|288550569|ref|ZP_05970934.2| ATP-dependent DNA helicase RecQ [Enterobacter cancerogenus ATCC
35316]
gi|288314641|gb|EFC53579.1| ATP-dependent DNA helicase RecQ [Enterobacter cancerogenus ATCC
35316]
Length = 630
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 166/326 (50%), Gaps = 47/326 (14%)
Query: 12 RSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKS 61
+ VL F FRP Q I L +D +++MPT S + + V+
Sbjct: 35 KQVLHETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVLNGLTVVVSP 94
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAK 121
+L + +QL A +A A + T +++ + + ++LLY++PE+L
Sbjct: 95 LISLMKDQVDQLLANGVA-----AACLNSTQTREQQQDVMAGCRNGQIRLLYIAPERLML 149
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP++P + LTAT
Sbjct: 150 D-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPELPFMALTAT 204
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRN 239
A LD+ ++L + D + + F+RPN+ Y + + KP LD+L + + R
Sbjct: 205 ADDTTRLDIVRLLGLNDPFIQVSSFDRPNIRYMLMEKFKP------LDQLLRYVQEQ-RG 257
Query: 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 281
+SGIIY S + ED L+NRG +AYHA LE+++ ++AF
Sbjct: 258 KSGIIYCNSRAKVEDTAARLQNRGFSAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAF 317
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+GI+KPNVRFV+H + +++E++YQ
Sbjct: 318 GMGINKPNVRFVVHFDIPRNIESYYQ 343
>gi|417392279|ref|ZP_12155173.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Minnesota str. A4-603]
gi|353612508|gb|EHC64868.1| ATP-dependent DNA helicase RecQ [Salmonella enterica subsp.
enterica serovar Minnesota str. A4-603]
Length = 603
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 7 AKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVS 66
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 67 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQVRLLYIAPERLM 121
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 122 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 176
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 177 TADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 229
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ + ++A
Sbjct: 230 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRADVQEKFQRDDLQIVVATVA 289
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 290 FGMGINKPNVRFVVHFDIPRNIESYYQ 316
>gi|253991584|ref|YP_003042940.1| ATP-dependent DNA helicase [Photorhabdus asymbiotica]
gi|211638462|emb|CAR67084.1| atp-dependent dna helicase recq (ec 3.6.1.-) [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253783034|emb|CAQ86199.1| ATP-dependent DNA helicase [Photorhabdus asymbiotica]
Length = 608
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 107/325 (32%), Positives = 169/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
VL+ F FRP Q IN L +D ++IMPT S + V V+
Sbjct: 15 QVLRETFGYQQFRPGQQQVINTILEGRDCLVIMPTGGGKSLCYQIPALIQEGVTLVVSPL 74
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A +A A + T ++ + +KLLY++PE+L
Sbjct: 75 ISLMKDQVDQLQANGVA-----ADCLNSTQAREQQIDVIRRCRQGMVKLLYIAPERLMMD 129
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+F+ +L + A +A+DE HC S WGHDFRP+Y+ L L+ FP +P++ LTATA
Sbjct: 130 -NFLEQLLEWQPA----ILAVDEAHCISQWGHDFRPEYRALGQLRQRFPTLPVIALTATA 184
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQ 240
D+ ++L + + ++ + F+RPN+ Y + + KP LD+L L R + +
Sbjct: 185 DETTRNDIVRLLNLNNPLIHISSFDRPNIRYTLIEKYKP------LDQLW-LFIRAQKGK 237
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFG 282
SGIIY S + E+ E L+ RGL V+ YHA L++N ++AFG
Sbjct: 238 SGIIYCNSRSKVEETSERLQKRGLSVAPYHAGLDNNQRARVQDAFQRDDLQVVVATVAFG 297
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+KPNVRFV+H + +++E++YQ
Sbjct: 298 MGINKPNVRFVVHFNIPRNIESYYQ 322
>gi|226945339|ref|YP_002800412.1| ATP-dependent DNA helicase RecQ [Azotobacter vinelandii DJ]
gi|226720266|gb|ACO79437.1| ATP-dependent DNA helicase RecQ [Azotobacter vinelandii DJ]
Length = 707
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 108/324 (33%), Positives = 165/324 (50%), Gaps = 37/324 (11%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-- 64
++ + +LK F FR NQ A I DA+++MPT S +V ++L+
Sbjct: 3 EQAQRILKEVFGYDAFRGNQAAIIERVARGGDALVLMPTGGGKSLCYQVPALLREGLAVV 62
Query: 65 ---LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAK 121
L +Q+A ++ L A+ + T L ++++I +KLLY++PE+L +
Sbjct: 63 VSPLIALMEDQVATLDE--LGVPAVALNSTLSLDEQREIAERIRQGGIKLLYLAPERLVQ 120
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
+ + LQ++ + AIDE HC S WGHDFRP+Y L L +FP VP + LTAT
Sbjct: 121 PR-MLAFLQRL----PIGLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPQVPRIALTAT 175
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQS 241
A + ++ + L +E+ + F+RPN+FY + K +K L LA+ R +
Sbjct: 176 ADKRTREEIVQRLHLENAERFLSSFDRPNIFYRIVAKDQPRKQLLGFLAE-----RRGDA 230
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGL 283
GI+Y S K+ E+L L +G YHA L + + +IAFG+
Sbjct: 231 GIVYCMSRKKVEELAAFLSEQGFPALPYHAGLSNELRTLHQKRFLNEEGLIMVATIAFGM 290
Query: 284 GIDKPNVRFVIHHCLSKSMENFYQ 307
GIDKPNVRFV H L KS+E +YQ
Sbjct: 291 GIDKPNVRFVAHLDLPKSLEAYYQ 314
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,574,571,987
Number of Sequences: 23463169
Number of extensions: 170019911
Number of successful extensions: 553157
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6043
Number of HSP's successfully gapped in prelim test: 623
Number of HSP's that attempted gapping in prelim test: 521108
Number of HSP's gapped (non-prelim): 11334
length of query: 323
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 181
effective length of database: 9,027,425,369
effective search space: 1633963991789
effective search space used: 1633963991789
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 77 (34.3 bits)