BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4493
(323 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RF63|RECQ1_PONAB ATP-dependent DNA helicase Q1 OS=Pongo abelii GN=RECQL PE=2 SV=1
Length = 649
Score = 280 bits (717), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 143/335 (42%), Positives = 203/335 (60%), Gaps = 25/335 (7%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++PWS +V+ VL++ F L FRP QL IN+ + K+ ++MPT ++ ++
Sbjct: 72 DFPWSGKVKDVLQNVFKLQKFRPLQLETINVTMAGKEVFLVMPTGGGKGLCYQLPALCSD 131
Query: 62 KFNLT-----DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSP 116
F L +QL + + + + + +K ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L IE C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + LRN G+ AYHA LE +
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTVSLRNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>sp|P46063|RECQ1_HUMAN ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3
Length = 649
Score = 275 bits (704), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 141/335 (42%), Positives = 193/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PWS +V+ +L++ F L FRP QL IN+ + K+ ++MPTG
Sbjct: 72 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L IE C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+N G+ AYHA LE +
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>sp|Q6AYJ1|RECQ1_RAT ATP-dependent DNA helicase Q1 OS=Rattus norvegicus GN=Recql PE=2
SV=1
Length = 621
Score = 275 bits (702), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 142/335 (42%), Positives = 196/335 (58%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL---------- 95
D+PWS +V+ VL+ F L FRP QL +N + +KD ++MPT GK L
Sbjct: 72 DFPWSGKVKHVLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSD 131
Query: 96 -----------------------------------KKKKICLMTE----SSSLKLLYVSP 116
K+ C+ TE +S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+AG L +A+DEVHCCS WGHDFRPDY+ L ILK FP++ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNISLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L +E C+ A FNRPNL+YEVR KP++ +D ++ +A+L++ R
Sbjct: 252 GLTATATNHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENIANLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ +SGIIY S K+ E + L+ G+R YHA +E +
Sbjct: 312 YKGKSGIIYCFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>sp|Q9Z129|RECQ1_MOUSE ATP-dependent DNA helicase Q1 OS=Mus musculus GN=Recql PE=1 SV=2
Length = 648
Score = 270 bits (691), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 192/335 (57%), Gaps = 69/335 (20%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------- 93
D+PW +V+ VL++ F L FRP QL IN+ + +KD ++MPTG
Sbjct: 72 DFPWFGKVKDVLQNVFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSD 131
Query: 94 ------------------LLKKKKIC-------------------LMTESSSLKLLYVSP 116
+LK+ I ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+AG L A+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEAGRLTGAAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLM 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ DVQK+L + C+ A FNRPNLFYEVR KP++ +D +++ L++ R
Sbjct: 252 GLTATATNHVLKDVQKILCVGKCLTFTASFNRPNLFYEVRQKPSSAEDFTEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++ QSGIIY S K+ E + L+ G+ YHA +E +
Sbjct: 312 YKGQSGIIYCFSQKDSEQITISLQKLGIHAGTYHANMEPEDKTKVHTQWSANELQVVVAT 371
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ S G
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
>sp|A8WK63|RECQ1_CAEBR Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis briggsae
GN=CBG24191 PE=3 SV=1
Length = 618
Score = 255 bits (651), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 139/334 (41%), Positives = 185/334 (55%), Gaps = 69/334 (20%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL----------- 95
+PWSD +LK+KF L FRP Q AAIN + K+DAI+I+ T GK L
Sbjct: 68 FPWSDEANQILKNKFRLEKFRPLQSAAINAVMSKEDAIVILSTGGGKSLCYQLPALLAKG 127
Query: 96 --------------------------------------KKKKICLMTESSSLKLLYVSPE 117
K+ + + S+ L+LLYV+PE
Sbjct: 128 LTLVISPLVSLVEDQIMQLQKLGIDAASLNANTPKDEAKRVEQAITKGSTELRLLYVTPE 187
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
KLAKSK M +L+K G L IAIDEVHCCS WGHDFR DY +L++LK F VPILG
Sbjct: 188 KLAKSKRMMNQLEKSLGVGYLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKGVPILG 247
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT+ V+ DV+KML I +V +A FNR NL Y+V KP ++ +C++++ + R+F
Sbjct: 248 LTATATSNVLDDVKKMLGIPVAIVFRAGFNRANLNYKVLTKPGSEDECVEKIVRTIKRKF 307
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES------------------NVSI 279
++GIIY S +CE L + L+ G+R YHA +E ++
Sbjct: 308 SGKTGIIYCLSRNDCEKLAKSLKANGIRAKHYHAYMEPVDRSAAHQKWVSGEIQVIVATV 367
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
AFG+GIDKP+VRFVIHH L KS+EN+YQ S G
Sbjct: 368 AFGMGIDKPDVRFVIHHSLPKSIENYYQESGRAG 401
>sp|Q9TXJ8|RECQ1_CAEEL Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis elegans
GN=K02F3.12 PE=3 SV=3
Length = 631
Score = 255 bits (651), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 140/337 (41%), Positives = 184/337 (54%), Gaps = 75/337 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC------- 101
+PWSD +LK +F+L FRP Q AAIN + K+DA++I+ TG K +C
Sbjct: 91 FPWSDEATKILKEQFHLEKFRPLQRAAINAVMSKEDAVVILSTGG---GKSLCYQLPALL 147
Query: 102 ------------------------LMTESSSL-----------------------KLLYV 114
L +SSSL +LLYV
Sbjct: 148 ANGLALVVSPLISLVEDQILQLRSLGIDSSSLNANTSKEEAKRVEDAITNKDSKFRLLYV 207
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PEKLAKSK M KL+K G L IAIDEVHCCS WGHDFR DY +L++LK F VP
Sbjct: 208 TPEKLAKSKKMMNKLEKSLSVGFLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKGVP 267
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
ILGLTATAT+ V+ DV+ ML I+ + +A FNR NL Y+V KP ++ +C +E+A +
Sbjct: 268 ILGLTATATSNVLDDVKDMLGIQAALTFRAGFNRSNLKYKVVQKPGSEDECTEEIAKTIK 327
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES------------------N 276
R F Q+GIIY S +CE + + L++ G++ YHA +E
Sbjct: 328 RDFAGQTGIIYCLSRNDCEKVAKALKSHGIKAKHYHAYMEPVDRSGAHQGWISGKIQVIV 387
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GIDKPNVRFVIHH L KS+EN+YQ S G
Sbjct: 388 ATVAFGMGIDKPNVRFVIHHSLPKSIENYYQESGRAG 424
>sp|Q9FT73|MED34_ARATH Mediator of RNA polymerase II transcription subunit 34
OS=Arabidopsis thaliana GN=MED34 PE=1 SV=1
Length = 705
Score = 251 bits (641), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 141/341 (41%), Positives = 195/341 (57%), Gaps = 36/341 (10%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS 57
+ W R V + F ++ +R NQ IN + +D ++IM Y +R
Sbjct: 70 TFEWDSRADDVRFNVFGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLRG 129
Query: 58 ----VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKI--CLMTESSSLKL 111
V+ +L + LAA+ I+ A ++ T +K + L LK+
Sbjct: 130 GTTLVVSPLLSLIQDQVMGLAALGIS-----AYMLTSTSGKENEKFVYKALEKGEDDLKI 184
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEK++KSK FM+KL+K + AG L+ I+IDE HCCS WGHDFRPDY+ LSILKT FP
Sbjct: 185 LYVTPEKVSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFP 244
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP++ LTATAT KV D+ +ML I CV + NRPNLFY VR K A K +DE+A+
Sbjct: 245 KVPMVALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAE 304
Query: 232 LMSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------- 277
+ + N+SGI+Y S KECE + +LR RG+ YHA +++N+
Sbjct: 305 FIRESYSNNESGIVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKL 364
Query: 278 -----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
++AFG+GI+KP+VRFVIHH LSKSME +YQ S G
Sbjct: 365 QVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAG 405
>sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rqh1 PE=1 SV=1
Length = 1328
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/344 (38%), Positives = 184/344 (53%), Gaps = 42/344 (12%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--------------DY 49
+YPWS V LK KF+L FR NQL AIN L KD I+MPT +
Sbjct: 500 SYPWSKEVLGCLKHKFHLKGFRKNQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEG 559
Query: 50 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC-LMTESSS 108
S V V+ +L + + L +NI L P + +++ I LM ++
Sbjct: 560 GASRGVTLVISPLLSLMQDQLDHLRKLNIPSLPLSG--EQPADE--RRQVISFLMAKNVL 615
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KLLYV+PE LA + + L+ +Y+ LARI IDE HC S WGHDFRPDY+ L +L+
Sbjct: 616 VKLLYVTPEGLASNGAITRVLKSLYERKLLARIVIDEAHCVSHWGHDFRPDYKQLGLLRD 675
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
+ +P + LTATA V D+ L++E+C+ +K+ FNRPNLFYE++ K KD E
Sbjct: 676 RYQGIPFMALTATANEIVKKDIINTLRMENCLELKSSFNRPNLFYEIKPK----KDLYTE 731
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLES------------ 275
L +S ++SGIIY S CE + +LRN GL+ YHA LE
Sbjct: 732 LYRFISNGHLHESGIIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQS 791
Query: 276 ------NVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+G+DK +VRFVIHH KS+E +YQ + G
Sbjct: 792 GSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAG 835
>sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana
GN=RECQL4A PE=2 SV=1
Length = 1188
Score = 213 bits (543), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 125/333 (37%), Positives = 174/333 (52%), Gaps = 38/333 (11%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DR 54
+PW+ ++ K F FRPNQ IN + D ++MPT S
Sbjct: 435 FPWTRKLEVNNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGG 494
Query: 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC--LMTESSSLKLL 112
+ V+ +L + L NI A + + ++ KI L +E S KLL
Sbjct: 495 ITLVISPLVSLIQDQIMNLLQANIPAASLSAGM-----EWAEQLKIFQELNSEHSKYKLL 549
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
YV+PEK+AKS S + L+ + G LAR IDE HC S WGHDFRPDYQ L ILK FP+
Sbjct: 550 YVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPN 609
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
+P+L LTATAT V DV + L + +CVV + FNRPNL+Y V K K CL+++
Sbjct: 610 IPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPK---TKKCLEDIDKF 666
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
+ ++ GIIY S +CE + E L+ G + + YH +E
Sbjct: 667 IKENHFDECGIIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINI 726
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KP+VRFVIHH L KS+E ++Q
Sbjct: 727 ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 759
>sp|P35187|SGS1_YEAST ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SGS1 PE=1 SV=1
Length = 1447
Score = 213 bits (542), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/346 (35%), Positives = 180/346 (52%), Gaps = 76/346 (21%)
Query: 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GK--------LL 95
PT YPWSD V L F L FRPNQL A+N L KD ++MPT GK ++
Sbjct: 658 PT-YPWSDEVLYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVV 716
Query: 96 KKKK-----------ICLMTE--------------------------------SSSLKLL 112
K K I LM + + L L+
Sbjct: 717 KSGKTHGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLDLV 776
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
Y+SPE ++ S+ + ++Y G LARI +DE HC S+WGHDFRPDY+ L K +PD
Sbjct: 777 YISPEMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPD 836
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
+P++ LTATA+ +V +D+ L++++ V +K FNR NL+YEV K K+ + E+ D
Sbjct: 837 IPMIALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK---TKNTIFEICDA 893
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------------- 276
+ RF+NQ+GIIY S K CE +++ G++ + YHA +E +
Sbjct: 894 VKSRFKNQTGIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQV 953
Query: 277 --VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GIDKP+VRFV H + +++E +YQ + G G +S+
Sbjct: 954 ICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSY 999
>sp|Q9FT70|RQL4B_ARATH ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana
GN=RECQL4B PE=2 SV=1
Length = 1150
Score = 207 bits (527), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 120/347 (34%), Positives = 174/347 (50%), Gaps = 64/347 (18%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------- 52
++PW+ + K F FRPNQ IN + D ++MPT S
Sbjct: 450 DFPWTKNLEVYNKLVFGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALLCA 509
Query: 53 --------------DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKK 98
D++ ++L++ + A + +L++
Sbjct: 510 GITLVISPLVSLIQDQIMNLLQTNISAASLSAGMEWAEQLEILQE--------------- 554
Query: 99 KICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRP 158
L +E S KLLYV+PEK+AKS+S + L+ + LAR IDE HC S WGHDFRP
Sbjct: 555 ---LSSEKSKYKLLYVTPEKVAKSESLLRHLEILNSRSLLARFVIDEAHCVSQWGHDFRP 611
Query: 159 DYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIK 218
DYQ L +LK FP++P+L LTATATT V DV + L + +CVV + FNRPNL+Y V
Sbjct: 612 DYQGLGVLKQKFPNIPMLALTATATTSVKEDVVQALGLVNCVVFRQSFNRPNLWYSV--V 669
Query: 219 PAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN-- 276
P K CL+++ + ++ GIIY S +CE + E LR G + + YH ++
Sbjct: 670 PKTNK-CLEDIDKFIRENHFDECGIIYCLSRMDCEKVTEALRVFGHKAAFYHGSMDPGKR 728
Query: 277 ----------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KP+VRFVIHH L KS+E ++Q
Sbjct: 729 AFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 775
>sp|Q9VGI8|BLM_DROME Bloom syndrome protein homolog OS=Drosophila melanogaster GN=mus309
PE=1 SV=1
Length = 1487
Score = 192 bits (487), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 114/334 (34%), Positives = 161/334 (48%), Gaps = 71/334 (21%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG---------------- 92
+ S R+ L F L FRPNQL IN LL D ++MPTG
Sbjct: 719 FEHSTRLMHGLSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEG 778
Query: 93 ----------------KLLKKKKIC-------------------LMTESSSLKLLYVSPE 117
L IC L ++ +KLLYV+PE
Sbjct: 779 VTIVISPLKSLIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPE 838
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
K++ S F L + ++R IDE HC S WGHDFRPDY+ L +LK FP+VP +
Sbjct: 839 KISSSARFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIA 898
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT +V LD+ L +++C + FNR NL Y R+ P LD+++ + +
Sbjct: 899 LTATATPRVRLDILAQLNLKNCKWFLSSFNRSNLRY--RVLPKKGVSTLDDISRYIRSKP 956
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSI 279
++ SGIIY S KEC++ +++ G+R +YHA L ++
Sbjct: 957 QHFSGIIYCLSRKECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATV 1016
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
AFG+GIDKP+VRFV+H+ L KS+E +YQ + G
Sbjct: 1017 AFGMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAG 1050
>sp|Q9DEY9|BLM_XENLA Bloom syndrome protein homolog OS=Xenopus laevis GN=blm PE=2 SV=1
Length = 1364
Score = 190 bits (482), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 124/358 (34%), Positives = 172/358 (48%), Gaps = 72/358 (20%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------- 52
N+P S + + KF L FR NQL AIN L +D I+MPT S
Sbjct: 600 NFPHSKEMMKIFHKKFGLHRFRTNQLEAINACLCGEDCFILMPTGGGKSLCYQLPGCISP 659
Query: 53 --------------DRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
D+V+ + + + + D + A+I + L KKD II
Sbjct: 660 GVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDAEAASIYLQLSKKDPII------- 712
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ ++ +Y+ LAR IDE HC S WGH
Sbjct: 713 ---------------KLLYVTPEKVCASTRLISTMENLYERQLLARFVIDEAHCVSQWGH 757
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFRPDY+ L++L+ F VP++ LTATA +V D+ L++ + FNR NL YE
Sbjct: 758 DFRPDYKRLNVLRQKFQSVPMMALTATANPRVKKDILNQLKMTKPQIFTMSFNRDNLKYE 817
Query: 215 VRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL- 273
V P K + + + + N SGIIY S EC+ + + L+ GL AYHA L
Sbjct: 818 VL--PKKPKRVALDCVEWIKKHHPNDSGIIYCLSRHECDTMADTLQKEGLAALAYHAGLA 875
Query: 274 ESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+SN +IAFG+GIDKP+VR+VIH L KS+E +YQ S G
Sbjct: 876 DSNRDYVQHKWINQDDCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAG 933
>sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana
GN=RECQL1 PE=2 SV=1
Length = 606
Score = 188 bits (477), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 121/321 (37%), Positives = 175/321 (54%), Gaps = 38/321 (11%)
Query: 24 FRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-----LTDFRPNQLAAI 76
FRP Q A ++ +KD ++MPT S ++ + LK+ L +Q+ A+
Sbjct: 207 FRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLPATLKAGVTIVISPLLSLIQDQIVAL 266
Query: 77 NI-----ALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQK 131
N+ A +L++ L ++ S KLLYV+PEK+A S SF+ L+
Sbjct: 267 NLKFGIPATFLNSQQTSSQAAAVLQE----LRRDNPSCKLLYVTPEKIAGSSSFLETLRC 322
Query: 132 MYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQ 191
+ + G LA +DE HC S WGHDFRPDY+ L LK FP VP++ LTATAT V DV
Sbjct: 323 LDRKGLLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPRVPVMALTATATESVCQDVL 382
Query: 192 KMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKE 251
K L+I V+K F+R NL YEV +K K+ L +L +L+ RF++QSGI+Y S E
Sbjct: 383 KSLRIPRAPVLKMSFDRINLKYEVIVKT---KEPLKQLQELLRDRFKDQSGIVYCLSKSE 439
Query: 252 CEDLREELRNR-GLRVSAYHAKLESN------------------VSIAFGLGIDKPNVRF 292
C D+ + L + ++ YHA + + +IAFG+GIDK +VRF
Sbjct: 440 CVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRF 499
Query: 293 VIHHCLSKSMENFYQVSIAFG 313
VIH+ LSK++E++YQ S G
Sbjct: 500 VIHNTLSKAVESYYQESGRAG 520
>sp|P54132|BLM_HUMAN Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1
Length = 1417
Score = 187 bits (476), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 126/346 (36%), Positives = 175/346 (50%), Gaps = 48/346 (13%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YP 50
++P + + + KF L +FR NQL AIN ALL +D I+MPT P
Sbjct: 648 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 707
Query: 51 WSDRVRSVLKSKFNLTDFRPNQLAAINI--ALLKKDAIIIMPTGKLLKKKKICLMTESSS 108
V S L+S L + +L +++I L D T L+ L +
Sbjct: 708 GVTVVISPLRS---LIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQ-----LSKKDPI 759
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+
Sbjct: 760 IKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQ 819
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK--DCL 226
FP VP++ LTATA +V D+ L+I V FNR NL Y V K + DCL
Sbjct: 820 KFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL 879
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN---------- 276
+ + + SGIIY S +EC+ + + L+ GL AYHA L +
Sbjct: 880 ----EWIRKHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWI 935
Query: 277 ---------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VRFVIH L KS+E +YQ S G
Sbjct: 936 NQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAG 981
>sp|O88700|BLM_MOUSE Bloom syndrome protein homolog OS=Mus musculus GN=Blm PE=1 SV=1
Length = 1416
Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 125/360 (34%), Positives = 172/360 (47%), Gaps = 76/360 (21%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD----------------------- 40
N+P + + + KF L +FR NQL AIN ALL +D
Sbjct: 656 NFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 715
Query: 41 --AIIIMPTDYPWSDRVRSV----LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94
I+I P D+V+ + + + + D ++ A I + L KKD II
Sbjct: 716 GVTIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPII------- 768
Query: 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGH
Sbjct: 769 ---------------KLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGH 813
Query: 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
DFR DY+ +++L+ FP VP++ LTATA +V D+ L+I V FNR NL Y
Sbjct: 814 DFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYY 873
Query: 215 VRIKPAAQK--DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
V K + DCL + + + SGIIY S +EC+ + + L+ GL AYHA
Sbjct: 874 VLPKKPKKVAFDCL----EWIRKHHPYDSGIIYCLSRRECDTMADTLQREGLAALAYHAG 929
Query: 273 LESN-------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
L + +IAFG+GIDKP+VRFVIH L KSME +YQ S G
Sbjct: 930 LSDSARDEVQHKWINQDNCQVICATIAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAG 989
>sp|Q9FT72|RQL3_ARATH ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana
GN=RECQL3 PE=1 SV=1
Length = 713
Score = 185 bits (470), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 175/337 (51%), Gaps = 36/337 (10%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLT----- 66
+L+ F DFR QL AI + +D +MPT S ++ ++ K L
Sbjct: 27 LLRWHFGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAKPGIVLVVSPLI 86
Query: 67 DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFM 126
NQ+ A+ + + + + K L + S++LLYV+PE +A +K FM
Sbjct: 87 ALMENQVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIA-TKGFM 145
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186
KL+K++ G L IAIDE HC SSWGHDFRP Y+ LS L+ DVP+L LTATA KV
Sbjct: 146 LKLRKLHSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLALTATAAPKV 205
Query: 187 MLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLD----ELADLMSRRFRNQSG 242
DV L + + +V+K+ FNRPN+FYEVR KD LD +L +L+ + N
Sbjct: 206 QKDVIDSLNLRNPLVLKSSFNRPNIFYEVRY-----KDLLDNAYTDLGNLL-KSCGNICA 259
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 284
IIY C+DL L + G+ +AYHA L S + ++AFG+G
Sbjct: 260 IIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMG 319
Query: 285 IDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRS 321
IDK +VR V H + KSME+FYQ S G + RS
Sbjct: 320 IDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRS 356
>sp|O18017|BLM_CAEEL Bloom syndrome protein homolog OS=Caenorhabditis elegans GN=him-6
PE=2 SV=2
Length = 988
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 115/327 (35%), Positives = 170/327 (51%), Gaps = 42/327 (12%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD-------------YPWSDRVRSVLK 60
LKSKF FR Q I L+ D ++MPT P V S L+
Sbjct: 238 TLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILPGVTVVVSPLR 297
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
S L + + ++ + I A + P + + + L + + S+KLLYV+PEK++
Sbjct: 298 S---LIEDQKMKMKELGIGCEALTADLGAPAQEKIYAE---LGSGNPSIKLLYVTPEKIS 351
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF--PDVPILGL 178
S + +++ G LAR IDE HC S WGHDFRPDY LS L+ + P VPI+ L
Sbjct: 352 ASGRLNSVFFDLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIAL 411
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFR 238
TATAT K++ D + L++++ + + F R NL Y+ + P A + ++ + + M + +
Sbjct: 412 TATATPKIVTDARDHLKMQNSKLFISSFVRDNLKYD--LIPKAARSLIN-VVEKMKQLYP 468
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGI+Y S KECE ++ L GL YHA L N+ +IA
Sbjct: 469 GKSGIVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDNLRVSVQRSWIANKFDVICATIA 528
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GIDKP+VRFVIH+ L KS+E +YQ
Sbjct: 529 FGMGIDKPDVRFVIHYSLPKSIEGYYQ 555
>sp|Q9I920|BLM_CHICK Bloom syndrome protein homolog (Fragment) OS=Gallus gallus GN=BLM
PE=2 SV=1
Length = 1142
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 158/337 (46%), Gaps = 76/337 (22%)
Query: 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--GKLL----------- 95
+ S+ + + KF L FR NQL AIN ALL +D I+MPT GK L
Sbjct: 379 FSHSEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAG 438
Query: 96 --------------------------------------KKKKICLMTESSSLKLLYVSPE 117
K + L + +KLLYV+PE
Sbjct: 439 VTVVISPLRSLIIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPE 498
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
K+ S ++ L+ +Y LAR IDE HC S WGHDFR DY+ L++L+ F VP++
Sbjct: 499 KVCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMA 558
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQ--KDCLDELADLMSR 235
LTATA +V D+Q L++ V FNR NL Y+V K + DCL + + +
Sbjct: 559 LTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDVLPKKPKKVAMDCL----EWIKK 614
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL-ESN------------------ 276
+ SGIIY S EC+ L+ GL AYHA L +SN
Sbjct: 615 YHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVIC 674
Query: 277 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313
+IAFG+GIDKP+VR+VIH L KS+E +Y S G
Sbjct: 675 ATIAFGMGIDKPDVRYVIHASLPKSVEGYYHESGRAG 711
>sp|P71359|RECQ_HAEIN ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recQ PE=3 SV=1
Length = 619
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/325 (36%), Positives = 169/325 (52%), Gaps = 47/325 (14%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
SVLKS F FR Q IN AL +DA+++M T S D + V+
Sbjct: 18 SVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPL 77
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + +QL A I +A + + L +++++ S LKLLYVSPEK+ +
Sbjct: 78 ISLMKDQVDQLQANGI-----EADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKVM-T 131
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
SF + Y C IAIDE HC S WGHDFRP+Y L LK FPD PI+ LTATA
Sbjct: 132 NSFFQLIS--YSKVCF--IAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATA 187
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFY--EVRIKPAAQKDCLDELADLMSRRFRNQ 240
D+ + L +++ F+RPN+ Y E + KP +++L + + + +
Sbjct: 188 DYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKP------MEQLTRFVLAQ-KGK 240
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282
SGIIY S + E + E LRN+G+ +AYHA +E+ + +IAFG
Sbjct: 241 SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFG 300
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GI+K NVRFV H L +S+E++YQ
Sbjct: 301 MGINKSNVRFVAHFDLPRSIESYYQ 325
>sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=recQ PE=3 SV=3
Length = 609
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 169/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q A I+ AL +D +++MPT S D + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLLANGVA-----AACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 128 LD-NFLDHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L++RG+ +AYHA LE+ + ++A
Sbjct: 236 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENAIRVDVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12)
GN=recQ PE=1 SV=5
Length = 609
Score = 165 bits (417), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 168/327 (51%), Gaps = 47/327 (14%)
Query: 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLK 60
+ VL+ F FRP Q I+ L +D +++MPT S + + V+
Sbjct: 13 AKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVS 72
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+L + +QL A +A A + T ++ ++ + ++LLY++PE+L
Sbjct: 73 PLISLMKDQVDQLQANGVA-----AACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+F+ L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 128 LD-NFLEHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFR 238
TA D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R
Sbjct: 183 TADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-R 235
Query: 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280
+SGIIY S + ED L+++G+ +AYHA LE+NV ++A
Sbjct: 236 GKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA 295
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
FG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 296 FGMGINKPNVRFVVHFDIPRNIESYYQ 322
>sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain
Pm70) GN=recQ PE=3 SV=1
Length = 632
Score = 164 bits (415), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 110/332 (33%), Positives = 164/332 (49%), Gaps = 47/332 (14%)
Query: 6 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRV 55
P VL + F FR Q I+ L+ KD+++IM T S + +
Sbjct: 21 PLKQTALDVLHAVFGYQSFRKGQEEVIDATLMGKDSLVIMATGNGKSLCYQIPALCFEGL 80
Query: 56 RSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVS 115
V+ +L + +QL A I +A + + +++++ S +LKLLYVS
Sbjct: 81 TLVISPLISLMKDQVDQLLANGI-----EADYLNSSQTFTEQQQVQNKLMSGTLKLLYVS 135
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PEK+ + F + ++ +AIDE HC S WGHDFRP+Y L LK+ FP PI
Sbjct: 136 PEKVMTTSFF-----HLISHCKVSFVAIDEAHCISQWGHDFRPEYTQLGGLKSCFPHAPI 190
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLM 233
+ LTATA D+ + L ++ V F+RPN+ Y + + KP Q C L
Sbjct: 191 MALTATADHATRQDILRHLNLQSPHVYIGSFDRPNIRYTLVEKFKPMEQL-CRFVLGQ-- 247
Query: 234 SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------- 276
+ +SGIIY S + E + E LRN+G+ AYHA LE++
Sbjct: 248 ----KGKSGIIYCNSRSKVERIAESLRNKGVSAQAYHAGLETSQREQVQRAFQRDNVQVV 303
Query: 277 -VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GI+K NVRFV+H L +S+E++YQ
Sbjct: 304 VATIAFGMGINKSNVRFVVHFDLPRSIESYYQ 335
>sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2
Length = 991
Score = 148 bits (373), Expect = 6e-35, Method: Composition-based stats.
Identities = 110/338 (32%), Positives = 158/338 (46%), Gaps = 43/338 (12%)
Query: 10 RVRSVLKSKFNLTDFRPNQLAAINIALLK--KDAIIIMPTDYPWS----------DRVRS 57
RVRS LK F F+ + +A++K KD + MPT S +
Sbjct: 15 RVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAKGITI 74
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPE 117
V+ L + + L + + + ++ + K L L E K+LY++PE
Sbjct: 75 VVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLAD---LEREKPQTKILYITPE 131
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
+A S SF L + L+ + +DE HC S WGHDFRPDY L L++ P +
Sbjct: 132 -MAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPCVA 190
Query: 178 LTATATTKVMLDVQKMLQIEDCVVI-KAPFNRPNLFYEVRIKPAAQ------KD-CLDEL 229
LTATAT +V DV L ++ V I K P R NLFY+V+ K KD CL L
Sbjct: 191 LTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLKAL 250
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------- 276
+ + GI+Y + + CE L EL RG+ AYHA L+++
Sbjct: 251 GQEADKGL-SGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEEK 309
Query: 277 -----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
+I+FG+G+DK NVRFV H ++KSM +YQ S
Sbjct: 310 VPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQES 347
>sp|Q5UPX0|YR290_MIMIV Putative ATP-dependent RNA helicase R290 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R290 PE=3 SV=1
Length = 548
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 156/329 (47%), Gaps = 66/329 (20%)
Query: 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINI 78
+ +FRP Q IN + +D I+ +T + I
Sbjct: 25 YGYDNFRPRQYEIINKVINGEDVCAIL-------------------MTSAGKSLCFQIPA 65
Query: 79 ALLKKDAIIIMPTGKLLKKKKICLMTESSS----------------------LKLLYVSP 116
L K AIII P L++ +++ L S K +YVSP
Sbjct: 66 LYLDKPAIIISPLISLMEDQRLILEKLGISSCCYNSNVENKAQMRKDIMQFKYKFIYVSP 125
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
E + K + KL+ ++ IAIDE HC S++G DFR Y+ ++ K + P+VPIL
Sbjct: 126 ESVVHLKDLIVKLEDFQG---ISLIAIDEAHCISAYGFDFRTAYREITFFKEILPNVPIL 182
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATAT V D+ K+LQ++ IKA F+RPNL+ EVR K K+ +++ +++ +
Sbjct: 183 ALTATATNIVAKDICKVLQLKTNEPIKASFDRPNLYLEVRTK---SKNPANDIVPIIN-K 238
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
+ NQS IIY + KE + + + L + YHA L + +
Sbjct: 239 YPNQSVIIYCLTKKETQKIADILTVHKVVCGIYHAGLSNEHKTKTHTNFINNKIKIVVAT 298
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
IAFG+GI+KP+VR VIH+ K++E +YQ
Sbjct: 299 IAFGMGINKPDVRVVIHYGAPKNIEGYYQ 327
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
GN=wrn PE=2 SV=1
Length = 1436
Score = 134 bits (337), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 152/335 (45%), Gaps = 60/335 (17%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALL-KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPN 71
S LK+ F + F+P Q ++ L ++D +++M T Y K F P
Sbjct: 479 SCLKTYFGHSSFKPVQWKVVHSVLRERRDNLVVMATGY-----------GKSLCYQFAPV 527
Query: 72 QLAAINIAL-----LKKDAIIIMPTGKL-------LKKKKICLMTESSSLKLLYVSPEKL 119
+ I I + L +D ++ + + + K + + ++++Y++PE
Sbjct: 528 YTSGIGIVICPLISLMEDQVLQLEMSNISSCFLGSAQSKNVLQDVKDGKMRVIYMTPEFC 587
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
++ S + L Y + IAIDE HC S WGHDFR Y+ L LK M P+VPI+ LT
Sbjct: 588 SRGISLLQDLDNRYG---ITLIAIDEAHCISEWGHDFRSAYRSLGSLKRMLPNVPIVALT 644
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRN 239
ATA+ + D+ K L + + V F+RPNL+ +V K + DL +
Sbjct: 645 ATASPSIREDITKSLNLHNPQVTCTSFDRPNLYLDVARKTT------NISIDLRQFLIKK 698
Query: 240 QSG---------IIYTTSIKECEDLREELRNRGLRVSAYHAKLESN-------------- 276
Q G I+Y + K E + EL G+ YHA +
Sbjct: 699 QQGSGWEFEGATIVYCPTRKTSEQVTAELIKLGIACGTYHAGMGIKQRREVHHRFMRDEI 758
Query: 277 ----VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+KP++R VIH+ K ME++YQ
Sbjct: 759 HCVVATVAFGMGINKPDIRKVIHYGAPKEMESYYQ 793
>sp|O34748|RECQ_BACSU Probable ATP-dependent DNA helicase RecQ OS=Bacillus subtilis
(strain 168) GN=recQ PE=3 SV=1
Length = 591
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 158/325 (48%), Gaps = 39/325 (12%)
Query: 10 RVRSVLKSKFNLTDFRPNQLAAIN-IALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-- 64
R +S+L F FR Q AI + +++ IMPT S ++ +++
Sbjct: 4 RAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIV 63
Query: 65 ---LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAK 121
L +Q+ A+ A + I + + + ++ L + + KL Y++PE+L
Sbjct: 64 ISPLISLMKDQVDALEEAGINAAYINSTQSNQEIYERLNGL--KEGAYKLFYITPERLT- 120
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP-ILGLTA 180
S F+ LQ + + +AIDE HC S WGHDFRP Y+ + IL D P I+ LTA
Sbjct: 121 SIEFIRILQGI----DVPLVAIDEAHCISQWGHDFRPSYRNIEILFRELHDKPVIMALTA 176
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TAT +V D+ K L I+ + F+R NL ++V + + D D + R++
Sbjct: 177 TATPEVHDDICKQLHIQKENTVYTGFSRENLTFKV-----VKGENKDRFIDEYVQNNRHE 231
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282
+GI+YT + KE + + E L+ +R YH L +V + AFG
Sbjct: 232 AGIVYTATRKEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFG 291
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GIDK N+RFV+H + K ME++YQ
Sbjct: 292 MGIDKSNIRFVLHAQIPKDMESYYQ 316
>sp|P50729|RECS_BACSU Probable ATP-dependent DNA helicase RecS OS=Bacillus subtilis
(strain 168) GN=recS PE=3 SV=1
Length = 496
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/328 (29%), Positives = 155/328 (47%), Gaps = 45/328 (13%)
Query: 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVL 59
+++ L F T F+ Q I L KD I ++PT S D + ++
Sbjct: 3 KLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIV 62
Query: 60 KSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKL 119
+L + + QL A +K A + L ++++ ++ K LY+SPE L
Sbjct: 63 SPLLSLMEDQVQQLKARG----EKRAAAL--NSMLNRQERQFVLEHIHRYKFLYLSPEAL 116
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
+S + KL K+ ++ IDE HC S WGHDFRPDY L L+ P+L LT
Sbjct: 117 -QSPYVLEKL----KSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRKKLGHPPVLALT 171
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK-DCLDELADLMSRRFR 238
ATAT + + DV +L+++ V NRPN+ +R++ AA + +D + L+
Sbjct: 172 ATATKETLQDVMNLLELQHAVRHLNSVNRPNI--ALRVENAADTAEKIDRVIQLVEN--L 227
Query: 239 NQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESNVSI------------------ 279
GI+Y + K ++L E++++ R YH LES I
Sbjct: 228 QGPGIVYCPTRKWAKELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTN 287
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
AFG+G+DKP++R+VIH L ++ E F Q
Sbjct: 288 AFGMGVDKPDIRYVIHFHLPQTAEAFMQ 315
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 155/331 (46%), Gaps = 54/331 (16%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALL-KKDAIIIMPTDYPWS----------DRVRSVLKS 61
+ LK F + F+P Q I+ L ++D + +M T Y S ++ V+
Sbjct: 538 TCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISP 597
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTES--SSLKLLYVSPEKL 119
+L + + QL NI P L + ++T+ +++YV+PE
Sbjct: 598 LISLMEDQVLQLKMSNI-----------PACFLGSAQSENVLTDIKLGKYRIVYVTPEYC 646
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
+ + M LQ++ + IA+DE HC S WGHDFR ++ L LKT P VPI+ LT
Sbjct: 647 SGN---MGLLQQLEADIGITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPMVPIVALT 703
Query: 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR---- 235
ATA++ + D+ + L + + + F+RPNL+ EVR K + L +L + +
Sbjct: 704 ATASSSIREDIVRCLNLRNPQITCTGFDRPNLYLEVRRKTG---NILQDLQPFLVKTSSH 760
Query: 236 -RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------- 277
F + IIY S K + + ELR L YHA + +
Sbjct: 761 WEFEGPT-IIYCPSRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVI 819
Query: 278 -SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GI+K ++R VIH+ K ME++YQ
Sbjct: 820 ATIAFGMGINKADIRQVIHYGAPKDMESYYQ 850
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus
GN=Wrn PE=1 SV=3
Length = 1401
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 157/328 (47%), Gaps = 51/328 (15%)
Query: 15 LKSKFNLTDFRPNQLAAINIALL-KKDAIIIMPTDYP----------WSDRVRSVLKSKF 63
LK+ F + F+P Q I+ L ++D +++M T Y ++ ++ V+
Sbjct: 504 LKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISPLI 563
Query: 64 NLTDFRPNQLAAINI-ALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + + QL N+ A L A + K I + +++Y++PE + +
Sbjct: 564 SLMEDQVLQLELSNVPACLLGSA----------QSKNILGDVKLGKYRVIYITPEFCSGN 613
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+ LQ++ + + IA+DE HC S WGHDFR ++ L LKT P VP++ L+ATA
Sbjct: 614 ---LDLLQQLDSSIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPLVPVIALSATA 670
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ-- 240
++ + D+ L ++D + F+RPNL+ EV K + L +L + R+ +
Sbjct: 671 SSSIREDIISCLNLKDPQITCTGFDRPNLYLEVGRKTG---NILQDLKPFLVRKASSAWE 727
Query: 241 ---SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSI 279
IIY S K E + EL L YHA ++ + ++
Sbjct: 728 FEGPTIIYCPSRKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATV 787
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
AFG+GI+K ++R VIH+ K ME++YQ
Sbjct: 788 AFGMGINKADIRKVIHYGAPKEMESYYQ 815
>sp|Q19546|WRN_CAEEL Probable Werner syndrome ATP-dependent helicase homolog 1
OS=Caenorhabditis elegans GN=wrn-1 PE=3 SV=2
Length = 1056
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 152/332 (45%), Gaps = 53/332 (15%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSK 62
+ L F FR Q + L KD ++M T Y S + + V+
Sbjct: 217 NALNEFFGHKGFREKQWDVVRNVLGGKDQFVLMSTGYGKSVCYQLPSLLLNSMTVVVSPL 276
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
+L + + L + I +K D G + + + ++ +Y+SPE +
Sbjct: 277 ISLMNDQVTTLVSKGIDAVKLD-------GHSTQIEWDQVANNMHRIRFIYMSPEMVTSQ 329
Query: 123 KSF--MTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL--KTMFPDVPILGL 178
K +T +K ++ +AIDE HC S WGHDFR Y++L+ + ++ ++P++ L
Sbjct: 330 KGLELLTSCRKH-----ISLLAIDEAHCVSQWGHDFRNSYRHLAEIRNRSDLCNIPMIAL 384
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA-----DLM 233
TATAT +V DV L++ ++ F+R NL+ V + KD ++L D +
Sbjct: 385 TATATVRVRDDVIANLRLRKPLITTTSFDRKNLYISVH----SSKDMAEDLGLFMKTDEV 440
Query: 234 SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------- 276
R IIY + + +D+ LR G+R + YHA L N
Sbjct: 441 KGRHFGGPTIIYCQTKQMVDDVNCVLRRIGVRSAHYHAGLTKNQREKAHTDFMRDKITTI 500
Query: 277 -VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GIDKP+VR VIH+ ++E++YQ
Sbjct: 501 VATVAFGMGIDKPDVRNVIHYGCPNNIESYYQ 532
>sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis thaliana
GN=RECQSIM PE=2 SV=1
Length = 858
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 138/272 (50%), Gaps = 36/272 (13%)
Query: 7 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN 64
W RV S+L+++F ++ R Q A++ + KD +++ T S ++ ++L K
Sbjct: 152 WEKRVNSILRNRFGISSLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQIPALLTGKVV 211
Query: 65 LTDFRPNQLAAINIALLK----KDAIIIMPTGKL---LKKKKICLMTESSSLKLLYVSPE 117
+ P ++ ++ LK K + + +G+L +++K + M +++YV PE
Sbjct: 212 VV-ISP-LISLMHDQCLKLSRHKVSACFLGSGQLDNCIEEKAMQGM-----YQIIYVCPE 264
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP------ 171
+ + + LQK+ K +A AIDE HC S WGHDFRP Y+ LS+L+ F
Sbjct: 265 TVVR---LIKPLQKLAKTHGIALFAIDEAHCVSKWGHDFRPHYRKLSVLRENFCASNLEF 321
Query: 172 ---DVPILGLTATATTKVMLDVQKMLQI-EDCVVIKAPFNRPNLFYEV---RIKPAAQ-- 222
DVPI+ LTATAT V D+ + L + ++ ++ F RPNL + V R K A+
Sbjct: 322 LEYDVPIMALTATATVNVQEDILESLHLSKETKIVLTSFFRPNLQFSVKHSRTKFASSYA 381
Query: 223 KDCLDELADLMSRRFRNQSGIIYTTSIKECED 254
KD L DL S + +N +G +E E+
Sbjct: 382 KD-FQNLVDLYSEK-KNSTGKKLAVISRESEE 411
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 18/83 (21%)
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLG 284
IIY + KE ++ + L GL+ +AY+A L +IAFG+G
Sbjct: 501 IIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMG 560
Query: 285 IDKPNVRFVIHHCLSKSMENFYQ 307
IDK NVR +IH+ +S+E +YQ
Sbjct: 561 IDKKNVRKIIHYGWLQSLEAYYQ 583
>sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2
Length = 1216
Score = 78.6 bits (192), Expect = 7e-14, Method: Composition-based stats.
Identities = 73/249 (29%), Positives = 108/249 (43%), Gaps = 41/249 (16%)
Query: 96 KKKKICLMTESSSLKLLYVSPEKLAKSKSFMT-KLQKMYKAGCLARIAIDEVHCCSSWGH 154
+++ + ++ + +L VSPE L + L + + +A IDEVHC S W H
Sbjct: 578 QRESVLKKVRAAQVHVLIVSPEALVGCGARGPGSLPQAAQLPPIAFACIDEVHCLSQWSH 637
Query: 155 DFRPDY-QYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRP-NLF 212
+FRP Y + +L+ LGLTATAT DV + L I + N P NL
Sbjct: 638 NFRPCYLRVCKVLREHMGVRCFLGLTATATRSTARDVAQHLGIAGEFELSGSANIPANLH 697
Query: 213 YEVRIKPAAQKDCLDELADLMS-RRFRN-QSGIIYTTS----------IKECEDLREELR 260
V + +D L L+ RFR S IIY T ++ C + + R
Sbjct: 698 LSVSM----DRDSDQALVTLLQGDRFRTLDSVIIYCTRERIQNGWLALLRTCLSMVGDSR 753
Query: 261 NRGLR----VSAYHAKLESN------------------VSIAFGLGIDKPNVRFVIHHCL 298
RG AYHA + S ++AFG+G+D+P+VR V+H L
Sbjct: 754 PRGCGPEAIAEAYHAGMSSQERRRVQQAFMRGHLRMVVATVAFGMGLDRPDVRAVLHLGL 813
Query: 299 SKSMENFYQ 307
S E++ Q
Sbjct: 814 PPSFESYVQ 822
>sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1
Length = 1208
Score = 74.3 bits (181), Expect = 1e-12, Method: Composition-based stats.
Identities = 66/247 (26%), Positives = 108/247 (43%), Gaps = 42/247 (17%)
Query: 96 KKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHD 155
+++ + ++ + +L ++PE L + L + +A IDE HC S W H+
Sbjct: 561 QRESVLQKIRAAQVHVLMLTPEALVGAGG----LPPAAQLPPVAFACIDEAHCLSQWSHN 616
Query: 156 FRPDY-QYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYE 214
FRP Y + +L+ LGLTATAT + DV + L + + + P P
Sbjct: 617 FRPCYLRVCKVLRERMGVHCFLGLTATATRRTASDVAQHLAVAEEPDLHGPAPVPT---N 673
Query: 215 VRIKPAAQKDCLDELADLMS-RRFRN-QSGIIYTTSIKECEDLREELRN---------RG 263
+ + + +D L L+ +RF+N S IIY ++ E + LR G
Sbjct: 674 LHLSVSMDRDTDQALLTLLQGKRFQNLDSIIIYCNRREDTERIAALLRTCLHAAWVPGSG 733
Query: 264 LRV-----SAYHAKLESN------------------VSIAFGLGIDKPNVRFVIHHCLSK 300
R AYHA + S ++AFG+G+D+P+VR V+H L
Sbjct: 734 GRAPKTTAEAYHAGMCSRERRRVQRAFMQGQLRVVVATVAFGMGLDRPDVRAVLHLGLPP 793
Query: 301 SMENFYQ 307
S E++ Q
Sbjct: 794 SFESYVQ 800
>sp|Q0WVW7|RQL5_ARATH ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana
GN=RECQL5 PE=2 SV=2
Length = 911
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 141/319 (44%), Gaps = 41/319 (12%)
Query: 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDFRPNQLAAI 76
+ FR QL AI + L ++++PT S ++ +++ L + L ++
Sbjct: 265 YGYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITLV---VSPLVSL 321
Query: 77 NIALLKKDAIIIMPTGKLLKKKKICLMTES------SSLKLLYVSPEKLAKSKSFMTKLQ 130
I LK II G L ++ TE+ +K+L+VSPE+L +
Sbjct: 322 MIDQLKHLPSIIK-GGLLSSSQRPEEATETLRKLKEGIIKVLFVSPERL-----LNVEFL 375
Query: 131 KMYKAG-CLARIAIDEVHCCSSWGHDFRPDYQYL--SILKTMFPDVPILGLTATATTKVM 187
M++ ++ + +DE HC S W H+FRP Y L S+L + IL +TATATT +
Sbjct: 376 SMFRMSLSVSLVVVDEAHCVSEWSHNFRPSYMRLKASMLFSELKAECILAMTATATTMTL 435
Query: 188 LDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQ-KDCLDELADLMSRRFRNQSGIIYT 246
V L+I +I+ R N V + A + KD L + + R S I+Y
Sbjct: 436 QAVMSSLEIPSTNLIQKSQLRDNFELSVSLSGANRMKDLLILMESPPYKEIR--SIIVYC 493
Query: 247 TSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDKP 288
E + + + LR+ + YH+ L + ++AFG+G+DK
Sbjct: 494 KFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKG 553
Query: 289 NVRFVIHHCLSKSMENFYQ 307
+V VIH + SME + Q
Sbjct: 554 DVGAVIHFSVPGSMEEYVQ 572
>sp|P73421|RECQ_SYNY3 ATP-dependent DNA helicase RecQ OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=recQ PE=3 SV=1
Length = 478
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 85/204 (41%), Gaps = 27/204 (13%)
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF---- 170
SPE L + Q K L I +DE HC WG FRP Y+ L L+
Sbjct: 116 SPETLLSEPVWNLLRQPQVK---LQGIMLDEAHCLVQWGDSFRPAYRRLGALRRGLGRDK 172
Query: 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA 230
+P+ TATA + + + L + + +RP L +++K + C +
Sbjct: 173 GQIPLAAFTATADRQQQNLIVEGLNLRSPECFQVSPHRPQL--HLKVKMVLSEYCRRQQL 230
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN-------------- 276
+ +SG+IY + +L + L+ RG AYH L +
Sbjct: 231 RRFLLKHLQESGLIYVRTRTMAINLAQWLQERGFDSEAYHGGLGPHQRRQLEQKWLTGQI 290
Query: 277 ----VSIAFGLGIDKPNVRFVIHH 296
+ AFGLGIDKP+ R+V+H+
Sbjct: 291 SSVVCTNAFGLGIDKPDTRWVLHY 314
>sp|Q5EAK4|TLH1_SCHPO ATP-dependent DNA helicase tlh1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh1 PE=2 SV=1
Length = 2100
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 97/232 (41%), Gaps = 32/232 (13%)
Query: 103 MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQY 162
+T + L L++ + A + S + + + G LAR+ IDE H + G +R
Sbjct: 1462 LTLETQLPDLFILTYESALTNSGLRFFESLATLGRLARVVIDEAHLLLTSG-AWRTALSR 1520
Query: 163 LSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQ 222
S L ++ P+ L+AT ++ + ++ V+ + R N+FY + P
Sbjct: 1521 ASRLSGLY--APLHLLSATFPRQLEMVARQTFCTNFYVLRETSTARENIFY--FLHPYDN 1576
Query: 223 KDCLDELADLMSRR--FRNQS-GIIYTTSIKECEDLREELRNRGL----RVSAY------ 269
+ L +L LM R F II+ + K+ E + L L V+ Y
Sbjct: 1577 TEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSD 1636
Query: 270 -----------HAKLESNVSIA---FGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+A ++ + IA FGLGI+ VR V+H+ L S ++ Q
Sbjct: 1637 EERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQ 1688
>sp|Q1RKN3|TLH2_SCHPO ATP-dependent DNA helicase tlh2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh2 PE=2 SV=1
Length = 1919
Score = 39.3 bits (90), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 93/232 (40%), Gaps = 32/232 (13%)
Query: 103 MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQY 162
+T + L L++ + A + S + + + G LAR+ IDE H + G +R
Sbjct: 1281 LTLETQLPDLFILTYESALTNSGLRFFESLATLGRLARVVIDEAHLLLTSG-AWRTALSR 1339
Query: 163 LSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQ 222
S L ++ P+ L+AT ++ + ++ V+ + R N+FY + P
Sbjct: 1340 ASRLSGLY--APLHLLSATFPRQLEMVARQTFCTNFYVLRETSTARENIFY--FLHPYDN 1395
Query: 223 KDCLDELADLMSRR--FRNQS-GIIYTTSIKECEDLREELRNRGL----RVSAYHAKLES 275
+ L +L LM R F II+ + K+ E + L L V+ Y +
Sbjct: 1396 TEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSD 1455
Query: 276 N--------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+ AFGLGI+ VR V+H+ L S ++ Q
Sbjct: 1456 EERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQ 1507
>sp|Q2JEZ1|SECA_FRASC Protein translocase subunit SecA OS=Frankia sp. (strain CcI3)
GN=secA PE=3 SV=1
Length = 994
Score = 37.0 bits (84), Expect = 0.18, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 16/103 (15%)
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRP-------NLFYEVRIKPAAQKDCLDEL 229
G+T TA M + + QI V+ P N+P ++ Y+ I A+ D + E
Sbjct: 369 GMTGTA----MTEAAEFHQIYSLGVVPIPTNKPMVRLDQPDVVYKTEI---AKFDAVVE- 420
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
D+ R + Q ++ TTS+++ E L ++LR RG+ +AK
Sbjct: 421 -DIAERHEKGQPVLVGTTSVEKSEYLSKQLRKRGVPHEVLNAK 462
>sp|Q6NIR8|SECA1_CORDI Protein translocase subunit SecA 1 OS=Corynebacterium diphtheriae
(strain ATCC 700971 / NCTC 13129 / Biotype gravis)
GN=secA1 PE=3 SV=1
Length = 853
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 18/105 (17%)
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPN-------LFYEVR-IKPAAQKDCLDE 228
G+T TA T + ++ QI VI P NRPN L Y+ + K AA D
Sbjct: 369 GMTGTAET----EASELHQIYKLDVIPIPTNRPNQREDMTDLVYKTQEAKFAAVVD---- 420
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL 273
D+ R + Q ++ TTS++ E L + L+ RG++ S +AK
Sbjct: 421 --DISERVTKGQPVLVGTTSVERSEYLSQLLQRRGIKHSVLNAKF 463
>sp|Q2JRR3|UVRB_SYNJA UvrABC system protein B OS=Synechococcus sp. (strain JA-3-3Ab)
GN=uvrB PE=3 SV=1
Length = 695
Score = 36.2 bits (82), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 214 EVRIKPAAQKDCLDELADLMSRRFRNQSG-----IIYTTSIKECEDLREELRNRGLRVSA 268
EV ++P A + D L ++ R R+Q G I+ T + + EDL E L+ RG+RV
Sbjct: 441 EVHVRPTAGQ-VEDLLGEIYLRLERSQQGLPERVIVTTLTKRMAEDLTEYLQERGIRVRY 499
Query: 269 YHAKLES 275
H+++ S
Sbjct: 500 LHSEISS 506
>sp|P22178|MAOC_FLATR NADP-dependent malic enzyme, chloroplastic OS=Flaveria trinervia
GN=MOD1 PE=2 SV=1
Length = 648
Score = 36.2 bits (82), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 136 GCLARIAIDEV-HCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKML 194
G + R +D + H W HD P ++L +KT+ P V ++G + T T V+ M
Sbjct: 433 GLIVRSRLDSLQHFKKPWAHDHEPVNEFLDAIKTIRPTV-LIGSSGTGQTFTKEVVETMS 491
Query: 195 QIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA 230
+ + +I A N P +Q +C E A
Sbjct: 492 SLNEKPIILALSN-----------PTSQSECTAEQA 516
>sp|Q0S2Y0|SECA_RHOSR Protein translocase subunit SecA OS=Rhodococcus sp. (strain RHA1)
GN=secA PE=3 SV=2
Length = 955
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 16/104 (15%)
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRP-------NLFYEVRIKPAAQKDCLDEL 229
G+T TA T+ ++ QI + VI P NRP +L Y+ A+ D + +
Sbjct: 371 GMTGTAETEAA----ELHQIYNLGVIPIPTNRPMVRVDNGDLIYKTE---EAKFDAV--V 421
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL 273
D++ R + Q +I TTS++ E L ++ RG+ + +AK
Sbjct: 422 DDVVERHEKGQPVLIGTTSVERSEYLSKQFTKRGVAHNVLNAKF 465
>sp|Q6CXT4|IF4A_KLULA ATP-dependent RNA helicase eIF4A OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=TIF1 PE=3 SV=1
Length = 396
Score = 35.0 bits (79), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 87/202 (43%), Gaps = 39/202 (19%)
Query: 130 QKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT-------A 182
++++K + +DE S G F+ Q +I + P ++ L+AT
Sbjct: 157 RRIFKTDNIKMFILDEADEMLSTG--FKE--QIYNIFTMLPPTSQVVLLSATMPGDVLEV 212
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK-DCLDELADLMSRRFRNQS 241
T+K M D ++L +D + ++ Y V ++ K DCL +L D +S
Sbjct: 213 TSKFMKDPVRILVKKDELTLEGIGQ-----YYVNVEEEQYKYDCLTDLYDSISVT----Q 263
Query: 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLE---------------SNVSIAFGL--- 283
+I+ + ++ E+L E LR VSA ++ L+ S + I+ L
Sbjct: 264 AVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLAR 323
Query: 284 GIDKPNVRFVIHHCLSKSMENF 305
GID V VI++ L + EN+
Sbjct: 324 GIDVQQVSLVINYDLPSNKENY 345
>sp|B7GSZ2|UVRB_BIFLS UvrABC system protein B OS=Bifidobacterium longum subsp. infantis
(strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 /
S12) GN=uvrB PE=3 SV=1
Length = 703
Score = 34.7 bits (78), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 21/117 (17%)
Query: 208 RPNLFYEVRIKPAAQKDCLDEL-ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRV 266
RP + +I K +D+L A++ +R RN+ ++ T + K EDL + L RG++V
Sbjct: 419 RPTGLLDPKIDVRPVKGQIDDLLAEIKARVARNERALVTTLTKKMAEDLTDYLLERGIKV 478
Query: 267 SAYHAKL-------------ESNVSIAFGL-----GIDKPNVRFVIHHCLSKSMENF 305
H+ + E + + G+ G+D P V V L E F
Sbjct: 479 EYLHSDVDTLRRVELLRMLREGKIDVIVGINLLREGLDLPEVSLVA--ILDADKEGF 533
>sp|Q2JN87|UVRB_SYNJB UvrABC system protein B OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=uvrB PE=3 SV=1
Length = 695
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Query: 214 EVRIKP-AAQKDCLDELADLMSRRFRNQSG-----IIYTTSIKECEDLREELRNRGLRVS 267
EV ++P A Q D D L ++ R R+Q G I+ T + + EDL E L+ RG+RV
Sbjct: 441 EVHVRPTAGQVD--DLLGEIYLRLERSQLGPAERVIVTTLTKRMAEDLTEYLQERGIRVR 498
Query: 268 AYHAKLES 275
H+++ S
Sbjct: 499 YLHSEITS 506
>sp|C1B1E2|SECA_RHOOB Protein translocase subunit SecA OS=Rhodococcus opacus (strain B4)
GN=secA PE=3 SV=1
Length = 955
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 16/104 (15%)
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRP-------NLFYEVRIKPAAQKDCLDEL 229
G+T TA T+ ++ QI + VI P NRP +L Y + + A +D
Sbjct: 371 GMTGTAETEAA----ELHQIYNLGVIPIPTNRPMVRVDNGDLIY--KTEEAKFHAVVD-- 422
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL 273
D++ R + Q +I TTS++ E L ++ RG+ + +AK
Sbjct: 423 -DVVERHEKGQPVLIGTTSVERSEYLSKQFTKRGVAHNVLNAKF 465
>sp|Q82K39|SECA2_STRAW Protein translocase subunit SecA 2 OS=Streptomyces avermitilis
(strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804
/ NRRL 8165 / MA-4680) GN=secA2 PE=3 SV=1
Length = 920
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 9/147 (6%)
Query: 131 KMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSI--LKTMFPDVPIL-GLTATATTKVM 187
+ Y G I E + G R + Q L+ L+ F L G+T TA M
Sbjct: 355 RRYNEGLHQAIEAKEAEEGTEAGVTVRNENQTLATITLQNFFRLYEKLAGMTGTA----M 410
Query: 188 LDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQSGIIY 245
+ + QI V+ P NRP + + +I + LAD+ R Q ++
Sbjct: 411 TEAAEFHQIYQLNVVPIPSNRPMIRRDDPDQIYRTEEAKYAAILADIAERHETGQPILVG 470
Query: 246 TTSIKECEDLREELRNRGLRVSAYHAK 272
TTS+++ E L LR +G+R +AK
Sbjct: 471 TTSVEKSELLSGLLRKQGIRHEVLNAK 497
>sp|P95759|SECA_STRGR Protein translocase subunit SecA OS=Streptomyces griseus GN=secA
PE=1 SV=2
Length = 940
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 18/104 (17%)
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRP-------NLFYEVRI-KPAAQKDCLDE 228
G+T TA M + + QI V+ P NRP +L Y + K AA D
Sbjct: 382 GMTGTA----MTEAAEFHQIYKLGVVPIPTNRPMVRADQSDLIYRTEVAKFAAVVD---- 433
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
D+ + + Q ++ TTS+++ E L ++L RG++ +AK
Sbjct: 434 --DIAEKHEKGQPILVGTTSVEKSEYLSQQLSKRGVQHEVLNAK 475
>sp|Q5YQU1|SECA_NOCFA Protein translocase subunit SecA OS=Nocardia farcinica (strain IFM
10152) GN=secA PE=3 SV=1
Length = 937
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 16/104 (15%)
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRP-------NLFYEVRIKPAAQKDCLDEL 229
G+T TA T+ ++ QI + V+ P N+P +L Y + + A +D++
Sbjct: 371 GMTGTAETEAA----ELHQIYNLGVVPIPTNKPMIRVDQSDLIY--KTEEAKFNAVVDDV 424
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL 273
A+ R + Q +I TTS++ E L ++ RG+ S +AK
Sbjct: 425 AE---RHEKGQPVLIGTTSVERSEYLSKQFTRRGIPHSVLNAKF 465
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,817,368
Number of Sequences: 539616
Number of extensions: 4161395
Number of successful extensions: 14048
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 13845
Number of HSP's gapped (non-prelim): 158
length of query: 323
length of database: 191,569,459
effective HSP length: 117
effective length of query: 206
effective length of database: 128,434,387
effective search space: 26457483722
effective search space used: 26457483722
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (28.1 bits)