Query psy4493
Match_columns 323
No_of_seqs 173 out of 1783
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 18:29:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4493.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4493hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03137 ATP-dependent DNA hel 100.0 9.7E-55 2.1E-59 418.1 29.5 298 3-322 440-781 (1195)
2 COG0514 RecQ Superfamily II DN 100.0 1.9E-53 4.1E-58 388.3 25.0 286 10-322 4-331 (590)
3 TIGR00614 recQ_fam ATP-depende 100.0 5.5E-51 1.2E-55 377.9 28.8 284 14-322 2-327 (470)
4 KOG0353|consensus 100.0 3.9E-51 8.4E-56 346.0 23.2 300 4-322 75-461 (695)
5 PRK11057 ATP-dependent DNA hel 100.0 5.3E-49 1.1E-53 373.8 29.7 289 5-322 7-337 (607)
6 TIGR01389 recQ ATP-dependent D 100.0 6.7E-49 1.5E-53 373.9 28.3 282 12-322 2-325 (591)
7 KOG0351|consensus 100.0 4.5E-48 9.8E-53 371.7 21.9 296 6-322 247-586 (941)
8 KOG0352|consensus 100.0 5E-46 1.1E-50 318.8 18.1 294 8-322 4-356 (641)
9 KOG0331|consensus 100.0 4.8E-45 1E-49 327.5 20.7 288 4-322 95-442 (519)
10 KOG0330|consensus 100.0 4.7E-44 1E-48 303.4 15.4 281 10-322 71-401 (476)
11 PRK04837 ATP-dependent RNA hel 100.0 8.1E-43 1.8E-47 320.3 24.3 295 4-322 12-356 (423)
12 PTZ00110 helicase; Provisional 100.0 1.3E-42 2.9E-47 325.9 25.0 292 8-322 138-478 (545)
13 PRK11776 ATP-dependent RNA hel 100.0 4.8E-42 1E-46 318.4 26.0 289 5-322 9-343 (460)
14 KOG0328|consensus 100.0 3.1E-43 6.8E-48 286.8 15.5 264 44-322 27-367 (400)
15 PRK10590 ATP-dependent RNA hel 100.0 8.8E-42 1.9E-46 315.6 25.9 296 5-322 6-346 (456)
16 COG0513 SrmB Superfamily II DN 100.0 8E-42 1.7E-46 317.8 25.6 288 7-322 36-374 (513)
17 PLN00206 DEAD-box ATP-dependen 100.0 1.5E-41 3.2E-46 317.9 26.5 293 7-322 128-469 (518)
18 PRK04537 ATP-dependent RNA hel 100.0 2.3E-41 4.9E-46 318.6 25.8 296 5-322 14-358 (572)
19 PRK11192 ATP-dependent RNA hel 100.0 7E-41 1.5E-45 308.7 27.1 294 5-322 6-346 (434)
20 KOG0342|consensus 100.0 6.8E-42 1.5E-46 298.2 18.5 286 6-322 88-431 (543)
21 PRK01297 ATP-dependent RNA hel 100.0 6.8E-41 1.5E-45 311.6 25.9 298 5-322 92-436 (475)
22 KOG0333|consensus 100.0 4.6E-41 1E-45 294.7 21.3 300 8-322 253-618 (673)
23 PRK11634 ATP-dependent RNA hel 100.0 2.1E-40 4.5E-45 313.9 26.6 287 7-322 13-346 (629)
24 PTZ00424 helicase 45; Provisio 100.0 7.4E-40 1.6E-44 299.6 24.0 290 7-322 35-368 (401)
25 TIGR03817 DECH_helic helicase/ 100.0 2.1E-39 4.5E-44 312.7 25.7 289 8-322 22-380 (742)
26 KOG0345|consensus 100.0 1.7E-39 3.7E-44 281.6 21.3 291 5-322 11-358 (567)
27 KOG0343|consensus 100.0 8.1E-40 1.7E-44 288.5 18.1 290 4-322 73-416 (758)
28 KOG0338|consensus 100.0 8E-40 1.7E-44 286.0 11.9 283 16-322 196-527 (691)
29 KOG0340|consensus 100.0 1.4E-38 3E-43 267.1 16.0 263 46-322 9-355 (442)
30 KOG0335|consensus 100.0 8.9E-38 1.9E-42 276.2 15.1 289 17-322 90-438 (482)
31 KOG0346|consensus 100.0 2.7E-37 5.9E-42 265.9 17.5 296 7-322 26-404 (569)
32 KOG0326|consensus 100.0 6.3E-38 1.4E-42 259.9 13.1 277 13-322 95-423 (459)
33 KOG0336|consensus 100.0 1.8E-37 3.9E-42 265.0 14.9 284 19-322 238-566 (629)
34 PRK02362 ski2-like helicase; P 100.0 1.8E-35 3.9E-40 287.8 26.0 285 5-322 6-391 (737)
35 COG1201 Lhr Lhr-like helicases 100.0 2.5E-35 5.4E-40 278.9 26.1 291 8-321 9-355 (814)
36 PRK13767 ATP-dependent helicas 100.0 3.6E-35 7.9E-40 288.5 25.5 284 9-316 20-385 (876)
37 KOG0332|consensus 100.0 1.2E-35 2.7E-40 251.0 18.1 292 8-322 98-437 (477)
38 KOG0348|consensus 100.0 1.3E-35 2.9E-40 261.0 17.3 293 8-322 144-548 (708)
39 TIGR00580 mfd transcription-re 100.0 1E-33 2.2E-38 276.1 26.5 275 5-322 434-764 (926)
40 KOG0341|consensus 100.0 1.5E-35 3.3E-40 251.7 10.2 290 8-321 178-521 (610)
41 KOG0327|consensus 100.0 1.5E-34 3.3E-39 245.8 13.3 267 37-322 19-364 (397)
42 PRK00254 ski2-like helicase; P 100.0 3.5E-33 7.6E-38 271.2 24.7 283 5-322 6-382 (720)
43 KOG0347|consensus 100.0 1.3E-34 2.8E-39 255.6 10.9 273 41-322 178-564 (731)
44 KOG4284|consensus 100.0 5.7E-34 1.2E-38 255.6 14.2 275 19-322 43-373 (980)
45 PRK01172 ski2-like helicase; P 100.0 3.2E-32 7E-37 263.3 26.3 283 5-320 6-368 (674)
46 KOG0339|consensus 100.0 6.6E-33 1.4E-37 242.7 18.6 280 19-321 241-568 (731)
47 PRK10689 transcription-repair 100.0 7.6E-32 1.7E-36 268.2 26.3 275 5-322 583-913 (1147)
48 PRK10917 ATP-dependent DNA hel 100.0 2E-31 4.4E-36 256.2 27.5 272 9-322 248-583 (681)
49 TIGR00643 recG ATP-dependent D 100.0 3.7E-31 8.1E-36 252.8 27.1 275 5-322 218-560 (630)
50 KOG0334|consensus 100.0 9.9E-33 2.1E-37 260.6 14.5 298 8-322 373-714 (997)
51 PRK14701 reverse gyrase; Provi 100.0 2.8E-31 6.2E-36 270.0 24.9 281 10-321 67-449 (1638)
52 PHA02653 RNA helicase NPH-II; 100.0 4.4E-31 9.5E-36 249.7 22.3 269 27-322 168-508 (675)
53 PRK09751 putative ATP-dependen 100.0 4.5E-31 9.7E-36 264.5 22.3 199 107-315 98-371 (1490)
54 COG1202 Superfamily II helicas 100.0 3.4E-31 7.4E-36 235.3 18.1 282 8-320 202-543 (830)
55 KOG0337|consensus 100.0 3.9E-32 8.4E-37 233.1 11.4 276 19-322 39-362 (529)
56 KOG0350|consensus 100.0 1.5E-31 3.3E-36 233.8 11.3 277 17-322 153-534 (620)
57 TIGR03158 cas3_cyano CRISPR-as 100.0 2E-29 4.4E-34 225.5 24.6 263 27-313 1-357 (357)
58 PRK09401 reverse gyrase; Revie 100.0 3.5E-30 7.5E-35 257.0 21.8 270 10-313 68-429 (1176)
59 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.5E-29 3.2E-34 244.7 23.4 259 30-322 9-330 (819)
60 TIGR01587 cas3_core CRISPR-ass 100.0 3.1E-30 6.6E-35 232.5 17.1 258 40-319 1-323 (358)
61 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3E-29 6.5E-34 239.0 23.9 285 9-321 2-383 (844)
62 PHA02558 uvsW UvsW helicase; P 100.0 1.9E-29 4.1E-34 235.4 21.3 263 21-319 112-443 (501)
63 PRK11664 ATP-dependent RNA hel 100.0 3.2E-29 6.8E-34 242.8 21.3 258 30-322 12-333 (812)
64 COG1111 MPH1 ERCC4-like helica 100.0 5.7E-29 1.2E-33 219.1 19.2 274 21-321 13-474 (542)
65 COG1204 Superfamily II helicas 100.0 8E-29 1.7E-33 237.4 18.5 274 16-319 24-397 (766)
66 KOG0344|consensus 100.0 9.4E-30 2E-34 227.2 11.3 277 20-322 155-489 (593)
67 PRK11131 ATP-dependent RNA hel 100.0 5.1E-28 1.1E-32 238.9 22.2 261 31-322 82-405 (1294)
68 COG1205 Distinct helicase fami 100.0 8.5E-28 1.8E-32 233.3 21.3 280 20-319 67-413 (851)
69 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.1E-26 2.5E-31 230.1 22.3 263 31-322 75-398 (1283)
70 PRK12898 secA preprotein trans 99.9 1.4E-26 3E-31 216.2 20.5 145 174-322 410-580 (656)
71 PRK09200 preprotein translocas 99.9 5.1E-26 1.1E-30 216.8 24.3 144 175-322 366-535 (790)
72 TIGR01054 rgy reverse gyrase. 99.9 6.5E-26 1.4E-30 226.8 22.8 255 11-301 67-410 (1171)
73 TIGR00603 rad25 DNA repair hel 99.9 1.4E-25 3.1E-30 211.8 23.2 263 22-321 254-593 (732)
74 PRK13766 Hef nuclease; Provisi 99.9 8.3E-26 1.8E-30 222.5 22.3 273 22-321 14-472 (773)
75 KOG0952|consensus 99.9 1.6E-26 3.4E-31 217.8 16.1 286 16-316 103-477 (1230)
76 TIGR03714 secA2 accessory Sec 99.9 1.2E-25 2.5E-30 212.5 21.9 144 174-322 361-531 (762)
77 KOG0329|consensus 99.9 1.4E-27 3E-32 192.9 7.2 258 20-322 61-349 (387)
78 PRK04914 ATP-dependent helicas 99.9 5.1E-25 1.1E-29 214.7 23.9 96 225-321 480-596 (956)
79 COG1061 SSL2 DNA or RNA helica 99.9 3.5E-24 7.7E-29 196.4 22.9 261 21-315 34-376 (442)
80 TIGR00963 secA preprotein tran 99.9 7.2E-25 1.6E-29 206.0 18.4 145 174-322 342-511 (745)
81 KOG0354|consensus 99.9 2.3E-24 5E-29 200.3 19.3 274 21-321 60-522 (746)
82 PRK05580 primosome assembly pr 99.9 4.4E-24 9.4E-29 205.0 21.3 267 22-322 143-543 (679)
83 PRK09694 helicase Cas3; Provis 99.9 2.3E-23 5E-28 201.9 25.2 272 18-318 281-665 (878)
84 KOG0948|consensus 99.9 3.3E-24 7.1E-29 195.9 14.8 274 22-322 128-531 (1041)
85 TIGR00595 priA primosomal prot 99.9 5.7E-23 1.2E-27 190.8 18.3 246 43-322 2-375 (505)
86 COG1197 Mfd Transcription-repa 99.9 3.4E-22 7.3E-27 193.0 22.8 275 5-322 577-907 (1139)
87 KOG0951|consensus 99.9 2.8E-22 6.1E-27 191.8 18.3 286 20-319 306-691 (1674)
88 PRK11448 hsdR type I restricti 99.9 9E-22 1.9E-26 196.0 22.0 274 22-316 412-801 (1123)
89 KOG0947|consensus 99.9 5.2E-22 1.1E-26 185.8 17.2 268 23-319 297-712 (1248)
90 KOG0950|consensus 99.9 2.4E-21 5.1E-26 182.1 19.1 284 11-318 211-599 (1008)
91 COG4581 Superfamily II RNA hel 99.9 3E-21 6.5E-26 186.3 18.9 268 22-319 118-526 (1041)
92 COG4098 comFA Superfamily II D 99.9 9E-20 2E-24 153.8 21.9 266 18-317 91-403 (441)
93 PRK12906 secA preprotein trans 99.9 5E-20 1.1E-24 175.0 21.7 101 222-322 422-547 (796)
94 COG1200 RecG RecG-like helicas 99.9 2.2E-19 4.7E-24 165.2 23.3 276 4-322 244-585 (677)
95 KOG0349|consensus 99.8 2.1E-21 4.4E-26 168.1 8.8 210 104-322 335-609 (725)
96 COG1643 HrpA HrpA-like helicas 99.8 1.8E-19 3.8E-24 172.8 20.8 265 29-322 56-381 (845)
97 KOG0922|consensus 99.8 3.7E-19 8E-24 162.2 21.3 261 30-321 58-383 (674)
98 PRK12904 preprotein translocas 99.8 8E-19 1.7E-23 167.5 18.1 146 174-323 367-568 (830)
99 PLN03142 Probable chromatin-re 99.8 1.9E-18 4E-23 169.8 20.1 270 23-320 169-589 (1033)
100 COG1203 CRISPR-associated heli 99.8 3.6E-18 7.7E-23 165.8 18.0 268 25-318 197-538 (733)
101 PRK13104 secA preprotein trans 99.8 1.2E-17 2.6E-22 159.8 20.7 102 222-323 426-582 (896)
102 KOG0923|consensus 99.8 3E-17 6.4E-22 149.1 17.8 265 26-321 268-599 (902)
103 cd00268 DEADc DEAD-box helicas 99.8 2.9E-17 6.4E-22 136.2 16.3 167 3-194 2-196 (203)
104 KOG0920|consensus 99.7 2.1E-16 4.6E-21 151.5 19.9 287 8-321 159-537 (924)
105 PRK12899 secA preprotein trans 99.7 5.3E-16 1.2E-20 148.6 21.7 101 222-322 550-675 (970)
106 COG1110 Reverse gyrase [DNA re 99.7 7.9E-16 1.7E-20 146.2 22.2 257 10-300 70-417 (1187)
107 COG1198 PriA Primosomal protei 99.7 5.1E-16 1.1E-20 147.2 19.6 139 21-187 196-364 (730)
108 KOG0924|consensus 99.7 4.2E-16 9.1E-21 142.1 16.6 263 28-321 361-690 (1042)
109 KOG0926|consensus 99.7 1.8E-16 3.9E-21 146.7 14.4 226 17-262 251-504 (1172)
110 COG4096 HsdR Type I site-speci 99.7 2.1E-16 4.5E-21 147.8 13.9 261 22-315 164-525 (875)
111 PF00270 DEAD: DEAD/DEAH box h 99.7 8.2E-17 1.8E-21 129.5 9.4 138 25-186 1-166 (169)
112 KOG4150|consensus 99.7 1.9E-16 4.2E-21 141.7 12.4 286 17-323 280-635 (1034)
113 TIGR00631 uvrb excinuclease AB 99.7 3E-16 6.4E-21 149.6 13.9 97 225-322 427-547 (655)
114 KOG0925|consensus 99.7 1.8E-15 3.8E-20 133.3 17.4 286 3-321 28-380 (699)
115 KOG0949|consensus 99.7 8.1E-16 1.8E-20 145.0 16.1 135 26-185 514-674 (1330)
116 PRK12900 secA preprotein trans 99.7 3.3E-16 7.2E-21 150.4 10.9 146 174-323 535-706 (1025)
117 PRK13107 preprotein translocas 99.7 1.3E-14 2.8E-19 138.9 20.9 102 222-323 431-586 (908)
118 cd00079 HELICc Helicase superf 99.7 6.4E-16 1.4E-20 118.7 9.6 99 224-322 12-129 (131)
119 PRK05298 excinuclease ABC subu 99.6 1.2E-15 2.7E-20 146.3 13.0 96 226-322 432-551 (652)
120 TIGR00348 hsdR type I site-spe 99.6 1.9E-14 4E-19 138.7 20.6 266 24-315 239-634 (667)
121 PRK12326 preprotein translocas 99.6 5.9E-14 1.3E-18 131.5 21.3 146 174-323 364-542 (764)
122 KOG0385|consensus 99.6 1.5E-13 3.3E-18 127.2 16.7 265 21-319 165-588 (971)
123 COG0556 UvrB Helicase subunit 99.5 3E-13 6.6E-18 120.9 13.5 142 172-321 386-550 (663)
124 PF00271 Helicase_C: Helicase 99.5 1.7E-14 3.7E-19 100.3 3.9 60 257-316 1-78 (78)
125 PRK13103 secA preprotein trans 99.5 3.6E-12 7.9E-17 122.5 18.9 102 222-323 431-586 (913)
126 TIGR01407 dinG_rel DnaQ family 99.4 1.7E-11 3.7E-16 121.8 21.6 144 173-318 596-804 (850)
127 smart00487 DEXDc DEAD-like hel 99.4 8.2E-12 1.8E-16 102.5 14.8 151 18-194 3-182 (201)
128 PRK12903 secA preprotein trans 99.3 2.2E-11 4.7E-16 116.2 13.2 146 174-323 363-534 (925)
129 PF04851 ResIII: Type III rest 99.3 1.7E-11 3.8E-16 99.6 10.7 134 23-184 3-184 (184)
130 KOG0384|consensus 99.3 4.5E-11 9.7E-16 116.1 14.2 271 20-319 367-800 (1373)
131 CHL00122 secA preprotein trans 99.3 1.5E-09 3.2E-14 104.3 24.1 67 222-288 406-491 (870)
132 smart00490 HELICc helicase sup 99.3 3.3E-12 7.2E-17 89.4 4.7 63 254-316 2-82 (82)
133 KOG0390|consensus 99.3 5.8E-10 1.3E-14 106.1 19.8 60 262-321 618-698 (776)
134 KOG0387|consensus 99.3 3E-10 6.6E-15 106.1 16.7 82 238-319 545-647 (923)
135 PRK12902 secA preprotein trans 99.3 4.9E-10 1.1E-14 107.5 18.4 110 175-288 377-506 (939)
136 KOG1123|consensus 99.2 6.5E-11 1.4E-15 105.3 11.5 254 22-318 301-637 (776)
137 COG4889 Predicted helicase [Ge 99.2 3.3E-11 7.1E-16 113.5 8.7 78 240-317 461-574 (1518)
138 KOG0953|consensus 99.2 4.9E-10 1.1E-14 101.0 15.7 222 39-317 191-463 (700)
139 KOG1000|consensus 99.2 7.8E-10 1.7E-14 98.4 15.9 82 238-319 491-592 (689)
140 KOG0951|consensus 99.1 1.3E-10 2.8E-15 113.1 9.2 261 22-317 1142-1486(1674)
141 KOG0389|consensus 99.1 2.5E-09 5.4E-14 100.1 16.3 81 238-318 776-876 (941)
142 PRK07246 bifunctional ATP-depe 99.1 5.9E-09 1.3E-13 102.8 19.4 126 173-299 574-724 (820)
143 PRK12901 secA preprotein trans 99.1 6.4E-10 1.4E-14 107.9 12.3 146 174-323 565-736 (1112)
144 PF02399 Herpes_ori_bp: Origin 99.1 8E-09 1.7E-13 98.3 18.3 249 40-316 51-377 (824)
145 cd00046 DEXDc DEAD-like helica 99.0 1.7E-09 3.6E-14 83.5 9.7 120 39-182 1-144 (144)
146 PRK08074 bifunctional ATP-depe 99.0 1.3E-07 2.9E-12 94.9 22.4 127 174-300 674-835 (928)
147 PF07652 Flavi_DEAD: Flaviviru 98.9 7.5E-09 1.6E-13 78.5 9.3 119 40-185 6-139 (148)
148 TIGR02562 cas3_yersinia CRISPR 98.9 6.2E-08 1.3E-12 94.8 16.6 73 243-318 760-882 (1110)
149 PRK14873 primosome assembly pr 98.8 4.7E-08 1E-12 93.8 13.1 113 47-187 169-308 (665)
150 KOG0386|consensus 98.6 1E-07 2.2E-12 91.7 7.9 83 238-320 725-828 (1157)
151 COG0653 SecA Preprotein transl 98.5 1E-06 2.2E-11 84.7 10.2 147 173-323 365-540 (822)
152 PF00176 SNF2_N: SNF2 family N 98.3 2.5E-06 5.5E-11 74.8 9.1 131 39-194 26-184 (299)
153 KOG0392|consensus 98.3 1.3E-05 2.8E-10 79.2 14.0 81 239-319 1340-1443(1549)
154 KOG0330|consensus 98.3 4.6E-06 9.9E-11 72.8 9.8 89 42-132 59-152 (476)
155 KOG0952|consensus 98.3 5.5E-07 1.2E-11 87.2 4.1 200 39-260 944-1174(1230)
156 PRK04837 ATP-dependent RNA hel 98.0 2.3E-05 4.9E-10 72.5 8.4 85 45-131 9-105 (423)
157 PF06862 DUF1253: Protein of u 97.9 0.001 2.2E-08 60.7 17.2 204 103-313 126-394 (442)
158 PTZ00110 helicase; Provisional 97.9 5E-05 1.1E-09 72.3 9.4 85 46-132 132-226 (545)
159 PRK10590 ATP-dependent RNA hel 97.8 5.9E-05 1.3E-09 70.4 8.2 85 46-132 3-98 (456)
160 PRK04537 ATP-dependent RNA hel 97.8 7.3E-05 1.6E-09 71.5 8.6 85 45-131 10-106 (572)
161 KOG0921|consensus 97.8 0.00019 4.1E-09 69.2 10.9 126 33-185 388-538 (1282)
162 PRK11747 dinG ATP-dependent DN 97.8 0.00027 5.9E-09 69.2 11.8 126 174-300 458-616 (697)
163 PRK11192 ATP-dependent RNA hel 97.8 9.7E-05 2.1E-09 68.6 8.4 95 46-142 3-106 (434)
164 KOG1002|consensus 97.8 0.0004 8.7E-09 62.8 11.6 78 240-317 639-736 (791)
165 PLN00206 DEAD-box ATP-dependen 97.8 8.7E-05 1.9E-09 70.3 7.9 78 43-121 120-209 (518)
166 KOG1803|consensus 97.8 0.00011 2.4E-09 67.9 8.1 58 20-93 182-240 (649)
167 PRK11634 ATP-dependent RNA hel 97.7 7.8E-05 1.7E-09 72.0 6.9 84 46-131 8-96 (629)
168 KOG4439|consensus 97.7 0.00038 8.2E-09 65.5 10.8 65 255-319 762-847 (901)
169 COG1199 DinG Rad3-related DNA 97.7 0.00043 9.3E-09 67.8 12.1 142 173-316 404-605 (654)
170 PRK11776 ATP-dependent RNA hel 97.7 0.00012 2.6E-09 68.5 7.5 84 46-131 6-94 (460)
171 TIGR01448 recD_rel helicase, p 97.6 0.00025 5.3E-09 69.6 9.1 59 22-96 322-382 (720)
172 TIGR01447 recD exodeoxyribonuc 97.6 0.00036 7.8E-09 66.6 9.5 124 14-151 136-273 (586)
173 PRK10875 recD exonuclease V su 97.6 0.0004 8.7E-09 66.6 9.7 70 10-93 138-210 (615)
174 PF13604 AAA_30: AAA domain; P 97.6 0.00058 1.2E-08 56.1 9.3 54 24-93 2-57 (196)
175 KOG0331|consensus 97.6 0.0036 7.8E-08 58.0 15.1 198 45-271 92-304 (519)
176 KOG0338|consensus 97.6 0.0013 2.7E-08 59.9 11.7 84 48-133 185-276 (691)
177 PTZ00424 helicase 45; Provisio 97.5 0.00031 6.7E-09 64.5 7.6 88 42-131 26-118 (401)
178 COG0513 SrmB Superfamily II DN 97.5 0.00027 5.9E-09 66.8 7.0 88 44-133 29-123 (513)
179 PF13872 AAA_34: P-loop contai 97.5 0.0024 5.1E-08 55.1 11.7 149 22-186 36-224 (303)
180 PRK01297 ATP-dependent RNA hel 97.5 0.0006 1.3E-08 64.1 8.9 84 46-131 89-184 (475)
181 cd00268 DEADc DEAD-box helicas 97.4 0.00082 1.8E-08 55.4 8.7 83 47-131 2-91 (203)
182 COG1201 Lhr Lhr-like helicases 97.4 0.00068 1.5E-08 66.2 8.8 77 52-133 9-97 (814)
183 KOG0348|consensus 97.4 0.00042 9.2E-09 63.3 6.6 87 44-132 136-234 (708)
184 COG0610 Type I site-specific r 97.4 0.0041 8.9E-08 63.0 14.1 39 278-317 600-638 (962)
185 PRK02362 ski2-like helicase; P 97.3 0.003 6.4E-08 62.7 12.6 75 47-122 4-81 (737)
186 PLN03137 ATP-dependent DNA hel 97.3 0.00027 5.8E-09 71.0 5.0 50 44-93 437-486 (1195)
187 TIGR00604 rad3 DNA repair heli 97.3 0.0033 7.2E-08 62.0 12.4 125 174-300 443-615 (705)
188 KOG1131|consensus 97.3 0.0018 4E-08 59.1 9.1 44 18-61 11-58 (755)
189 PRK15483 type III restriction- 97.2 0.0054 1.2E-07 61.1 12.8 39 278-316 508-546 (986)
190 TIGR03817 DECH_helic helicase/ 97.2 0.00089 1.9E-08 66.1 7.2 72 49-121 19-94 (742)
191 TIGR03117 cas_csf4 CRISPR-asso 97.2 0.0057 1.2E-07 58.7 12.0 125 174-300 373-561 (636)
192 TIGR00614 recQ_fam ATP-depende 97.1 0.00031 6.7E-09 65.9 3.2 61 58-120 2-63 (470)
193 TIGR01389 recQ ATP-dependent D 97.1 0.00041 8.9E-09 67.0 3.6 37 57-93 3-39 (591)
194 PF05621 TniB: Bacterial TniB 97.1 0.0059 1.3E-07 52.8 9.9 117 39-181 62-188 (302)
195 PF05970 PIF1: PIF1-like helic 97.0 0.0029 6.3E-08 57.2 8.3 101 24-151 2-116 (364)
196 KOG0391|consensus 97.0 0.0026 5.7E-08 63.3 8.2 133 23-185 615-778 (1958)
197 KOG0334|consensus 97.0 0.0012 2.7E-08 64.8 5.5 100 40-144 361-471 (997)
198 KOG0345|consensus 96.9 0.003 6.5E-08 57.0 7.3 79 51-131 13-101 (567)
199 KOG0336|consensus 96.9 0.0073 1.6E-07 53.7 9.0 67 53-120 229-306 (629)
200 COG1199 DinG Rad3-related DNA 96.9 0.005 1.1E-07 60.3 9.1 44 13-56 5-52 (654)
201 KOG0388|consensus 96.8 0.0076 1.6E-07 57.2 9.0 141 25-196 569-747 (1185)
202 PF13307 Helicase_C_2: Helicas 96.8 0.0012 2.5E-08 52.8 3.1 63 238-300 8-92 (167)
203 PF07517 SecA_DEAD: SecA DEAD- 96.8 0.0082 1.8E-07 51.4 8.4 110 22-150 76-210 (266)
204 PRK11057 ATP-dependent DNA hel 96.8 0.0016 3.4E-08 63.1 4.5 40 54-93 12-51 (607)
205 KOG1805|consensus 96.8 0.0055 1.2E-07 60.0 8.0 105 22-151 668-810 (1100)
206 TIGR02768 TraA_Ti Ti-type conj 96.7 0.0073 1.6E-07 59.7 8.9 102 22-151 351-453 (744)
207 PRK13889 conjugal transfer rel 96.7 0.0084 1.8E-07 60.5 9.2 102 22-151 345-447 (988)
208 KOG0391|consensus 96.6 0.0052 1.1E-07 61.3 6.9 94 217-312 1256-1375(1958)
209 COG4581 Superfamily II RNA hel 96.6 0.0099 2.1E-07 59.6 8.8 159 63-261 116-282 (1041)
210 PRK01172 ski2-like helicase; P 96.6 0.05 1.1E-06 53.5 13.8 71 48-121 5-78 (674)
211 COG0553 HepA Superfamily II DN 96.6 0.0078 1.7E-07 60.9 8.2 96 224-319 692-811 (866)
212 KOG0346|consensus 96.5 0.0018 3.9E-08 57.9 2.7 87 44-132 19-116 (569)
213 TIGR00596 rad1 DNA repair prot 96.4 0.019 4.1E-07 56.9 9.4 85 107-201 6-96 (814)
214 KOG0342|consensus 96.4 0.0071 1.5E-07 54.9 5.7 77 46-123 84-169 (543)
215 PF13401 AAA_22: AAA domain; P 96.3 0.017 3.7E-07 43.7 7.1 24 38-61 4-27 (131)
216 PRK04296 thymidine kinase; Pro 96.3 0.021 4.5E-07 46.6 7.7 34 41-90 5-38 (190)
217 PF05127 Helicase_RecD: Helica 96.3 0.0061 1.3E-07 48.7 4.2 102 42-183 1-124 (177)
218 KOG0388|consensus 96.2 0.0095 2.1E-07 56.6 5.6 92 225-318 1032-1142(1185)
219 PRK06090 DNA polymerase III su 96.1 0.034 7.3E-07 49.1 8.5 143 1-186 1-151 (319)
220 KOG0343|consensus 96.1 0.24 5.2E-06 46.2 13.7 84 46-131 71-163 (758)
221 PRK14956 DNA polymerase III su 96.1 0.029 6.3E-07 52.0 8.1 21 41-61 43-63 (484)
222 PRK13767 ATP-dependent helicas 96.0 0.015 3.2E-07 58.7 6.5 68 53-122 20-98 (876)
223 PRK13826 Dtr system oriT relax 96.0 0.026 5.6E-07 57.6 7.9 59 22-96 380-439 (1102)
224 PRK05707 DNA polymerase III su 95.9 0.099 2.1E-06 46.5 10.8 118 40-186 24-149 (328)
225 COG0514 RecQ Superfamily II DN 95.9 0.0092 2E-07 56.4 4.2 39 55-93 5-43 (590)
226 KOG0339|consensus 95.8 0.19 4E-06 46.4 12.0 49 44-93 223-271 (731)
227 KOG0353|consensus 95.8 0.0076 1.6E-07 53.0 3.1 50 44-93 71-120 (695)
228 PF13086 AAA_11: AAA domain; P 95.8 0.019 4.2E-07 48.0 5.5 62 24-93 2-64 (236)
229 KOG0326|consensus 95.7 0.029 6.3E-07 48.4 6.2 44 49-93 90-133 (459)
230 KOG2340|consensus 95.7 0.027 5.9E-07 51.9 6.2 78 239-316 552-652 (698)
231 PRK00254 ski2-like helicase; P 95.7 0.014 3E-07 57.9 4.7 72 49-121 6-81 (720)
232 PF13245 AAA_19: Part of AAA d 95.6 0.033 7.1E-07 37.9 5.0 54 31-97 2-57 (76)
233 KOG1132|consensus 95.6 0.026 5.7E-07 55.0 6.0 36 23-58 21-60 (945)
234 smart00488 DEXDc2 DEAD-like he 95.6 0.046 1E-06 47.8 7.1 36 24-59 9-48 (289)
235 smart00489 DEXDc3 DEAD-like he 95.6 0.046 1E-06 47.8 7.1 36 24-59 9-48 (289)
236 PRK14712 conjugal transfer nic 95.6 0.076 1.6E-06 56.2 9.6 104 22-151 834-944 (1623)
237 KOG0335|consensus 95.5 0.016 3.4E-07 53.1 4.2 92 53-146 83-189 (482)
238 KOG1802|consensus 95.5 0.07 1.5E-06 50.6 8.3 59 20-93 407-465 (935)
239 TIGR02760 TraI_TIGR conjugativ 95.5 0.57 1.2E-05 51.5 16.2 199 22-261 428-648 (1960)
240 PRK08769 DNA polymerase III su 95.5 0.077 1.7E-06 46.9 8.3 43 136-184 112-154 (319)
241 KOG0344|consensus 95.5 0.018 4E-07 53.4 4.4 76 49-125 141-226 (593)
242 PRK13709 conjugal transfer nic 95.5 0.12 2.6E-06 55.4 10.7 104 22-151 966-1076(1747)
243 PF02562 PhoH: PhoH-like prote 95.4 0.071 1.5E-06 43.8 7.3 32 23-54 4-35 (205)
244 PF00448 SRP54: SRP54-type pro 95.3 0.24 5.3E-06 40.5 10.2 54 136-193 82-136 (196)
245 TIGR02760 TraI_TIGR conjugativ 95.3 0.15 3.4E-06 55.7 11.3 104 22-151 1018-1126(1960)
246 PRK12323 DNA polymerase III su 95.3 0.18 3.8E-06 48.6 10.2 17 135-151 122-138 (700)
247 PRK09401 reverse gyrase; Revie 95.2 0.032 7E-07 57.8 5.8 76 55-132 69-146 (1176)
248 PRK10917 ATP-dependent DNA hel 95.1 0.049 1.1E-06 53.6 6.5 123 4-131 202-332 (681)
249 PRK14701 reverse gyrase; Provi 95.1 0.036 7.7E-07 59.1 5.8 75 53-131 66-144 (1638)
250 PRK06871 DNA polymerase III su 95.1 0.27 5.8E-06 43.6 10.4 75 106-186 71-150 (325)
251 PF09848 DUF2075: Uncharacteri 95.1 0.026 5.7E-07 50.9 4.2 91 41-151 4-97 (352)
252 TIGR00604 rad3 DNA repair heli 95.1 0.058 1.3E-06 53.3 6.9 43 18-60 5-51 (705)
253 PHA03368 DNA packaging termina 95.1 1.1 2.3E-05 43.3 14.6 151 8-188 228-396 (738)
254 TIGR00643 recG ATP-dependent D 95.0 0.047 1E-06 53.2 5.8 121 4-131 175-306 (630)
255 PRK06964 DNA polymerase III su 95.0 0.5 1.1E-05 42.3 11.7 46 135-186 130-175 (342)
256 KOG0352|consensus 94.9 0.038 8.2E-07 49.6 4.5 40 54-93 6-47 (641)
257 PRK07003 DNA polymerase III su 94.8 0.52 1.1E-05 46.3 12.1 43 136-184 118-160 (830)
258 COG1444 Predicted P-loop ATPas 94.8 0.5 1.1E-05 46.2 12.0 117 26-183 217-357 (758)
259 PLN03025 replication factor C 94.7 0.33 7.3E-06 43.1 10.2 24 39-62 35-58 (319)
260 TIGR00376 DNA helicase, putati 94.7 0.083 1.8E-06 51.4 6.7 56 22-93 156-212 (637)
261 PRK14958 DNA polymerase III su 94.7 0.39 8.4E-06 45.5 10.9 16 136-151 118-133 (509)
262 KOG1015|consensus 94.6 0.042 9.1E-07 54.1 4.3 91 229-319 1131-1266(1567)
263 PRK08727 hypothetical protein; 94.6 0.31 6.8E-06 41.1 9.3 17 136-152 92-108 (233)
264 PRK14951 DNA polymerase III su 94.5 0.25 5.4E-06 47.7 9.3 16 136-151 123-138 (618)
265 PHA03333 putative ATPase subun 94.5 0.93 2E-05 43.9 12.8 136 28-185 177-335 (752)
266 PRK07994 DNA polymerase III su 94.5 0.46 9.9E-06 46.1 11.0 17 135-151 117-133 (647)
267 TIGR00596 rad1 DNA repair prot 94.5 0.087 1.9E-06 52.4 6.2 24 238-261 294-317 (814)
268 PRK12723 flagellar biosynthesi 94.4 0.74 1.6E-05 41.9 11.6 55 136-194 253-309 (388)
269 PRK00440 rfc replication facto 94.4 1.1 2.3E-05 39.6 12.7 56 2-61 2-61 (319)
270 PF12340 DUF3638: Protein of u 94.4 0.58 1.2E-05 39.1 10.0 56 4-59 2-62 (229)
271 PRK14960 DNA polymerase III su 94.4 0.48 1E-05 45.8 10.7 42 136-183 117-158 (702)
272 PF00270 DEAD: DEAD/DEAH box h 94.3 0.11 2.4E-06 41.1 5.6 62 69-132 1-67 (169)
273 KOG0340|consensus 94.2 0.041 8.8E-07 48.2 3.0 43 17-59 23-65 (442)
274 KOG0948|consensus 94.1 0.04 8.6E-07 52.9 2.9 70 68-141 130-202 (1041)
275 COG1435 Tdk Thymidine kinase [ 94.1 0.47 1E-05 38.4 8.5 86 41-151 7-96 (201)
276 PRK14948 DNA polymerase III su 94.0 0.46 9.9E-06 46.2 10.1 22 40-61 40-61 (620)
277 cd01124 KaiC KaiC is a circadi 94.0 0.86 1.9E-05 36.6 10.4 95 41-151 2-109 (187)
278 PRK14949 DNA polymerase III su 94.0 0.31 6.7E-06 48.7 8.8 21 41-61 41-61 (944)
279 PRK05896 DNA polymerase III su 93.8 0.44 9.6E-06 45.7 9.3 21 41-61 41-61 (605)
280 TIGR00580 mfd transcription-re 93.8 0.21 4.6E-06 50.6 7.5 80 50-131 435-522 (926)
281 KOG0333|consensus 93.7 0.054 1.2E-06 49.9 3.0 49 44-93 245-293 (673)
282 PF00308 Bac_DnaA: Bacterial d 93.7 0.33 7.2E-06 40.5 7.6 73 108-185 64-143 (219)
283 PRK11747 dinG ATP-dependent DN 93.6 0.32 6.9E-06 48.0 8.3 66 12-93 14-89 (697)
284 PRK07940 DNA polymerase III su 93.5 2 4.4E-05 39.3 12.8 79 107-191 83-165 (394)
285 KOG0351|consensus 93.5 0.079 1.7E-06 53.3 3.9 41 53-93 250-290 (941)
286 PRK14959 DNA polymerase III su 93.4 0.39 8.4E-06 46.3 8.2 21 41-61 41-61 (624)
287 PHA02533 17 large terminase pr 93.3 2.5 5.5E-05 40.3 13.5 58 22-93 58-115 (534)
288 PRK14961 DNA polymerase III su 93.3 0.41 8.8E-06 43.4 8.0 21 41-61 41-61 (363)
289 PRK06526 transposase; Provisio 93.3 0.39 8.4E-06 41.1 7.3 20 37-56 97-116 (254)
290 TIGR00708 cobA cob(I)alamin ad 93.2 1.9 4.2E-05 34.4 10.7 123 41-184 8-141 (173)
291 PRK14974 cell division protein 93.1 1.9 4.1E-05 38.5 11.7 54 136-193 221-275 (336)
292 KOG1015|consensus 93.1 0.22 4.8E-06 49.4 6.0 43 134-183 818-860 (1567)
293 PF13177 DNA_pol3_delta2: DNA 93.1 3.1 6.6E-05 32.9 11.8 121 41-191 22-150 (162)
294 PRK11889 flhF flagellar biosyn 93.1 1.9 4.1E-05 39.3 11.5 124 40-194 243-374 (436)
295 cd00009 AAA The AAA+ (ATPases 93.1 0.83 1.8E-05 34.5 8.5 23 38-60 19-41 (151)
296 PRK07764 DNA polymerase III su 93.0 0.99 2.1E-05 45.3 10.8 21 41-61 40-60 (824)
297 KOG0991|consensus 93.0 0.1 2.2E-06 43.4 3.2 26 39-64 49-74 (333)
298 COG1419 FlhF Flagellar GTP-bin 92.9 2.1 4.5E-05 38.9 11.5 124 38-196 203-337 (407)
299 PRK10536 hypothetical protein; 92.9 0.97 2.1E-05 38.5 9.0 34 24-57 60-93 (262)
300 PRK07993 DNA polymerase III su 92.9 1.2 2.7E-05 39.7 10.3 75 106-186 71-151 (334)
301 PRK05973 replicative DNA helic 92.8 1.2 2.7E-05 37.5 9.6 91 38-150 64-160 (237)
302 PRK14964 DNA polymerase III su 92.8 1 2.2E-05 42.3 9.9 46 135-186 114-159 (491)
303 PRK06645 DNA polymerase III su 92.7 0.84 1.8E-05 43.1 9.3 22 40-61 45-66 (507)
304 TIGR02621 cas3_GSU0051 CRISPR- 92.7 0.11 2.5E-06 51.5 3.6 66 55-121 4-75 (844)
305 PRK14953 DNA polymerase III su 92.6 0.42 9.1E-06 45.0 7.2 17 135-151 117-133 (486)
306 PRK08691 DNA polymerase III su 92.6 2.5 5.5E-05 41.3 12.4 21 41-61 41-61 (709)
307 PRK14952 DNA polymerase III su 92.5 2.1 4.5E-05 41.3 11.8 18 134-151 115-132 (584)
308 PRK06893 DNA replication initi 92.5 0.57 1.2E-05 39.4 7.3 48 136-186 90-138 (229)
309 PHA02544 44 clamp loader, smal 92.4 1.3 2.8E-05 39.2 9.8 14 136-149 99-112 (316)
310 PRK14971 DNA polymerase III su 92.4 0.62 1.3E-05 45.2 8.2 43 134-182 118-160 (614)
311 PRK07133 DNA polymerase III su 92.3 0.72 1.6E-05 45.3 8.5 18 134-151 115-132 (725)
312 cd01120 RecA-like_NTPases RecA 92.3 2.5 5.5E-05 32.6 10.5 19 133-151 81-99 (165)
313 TIGR01054 rgy reverse gyrase. 92.3 0.54 1.2E-05 49.1 8.0 78 53-132 65-144 (1171)
314 PRK14955 DNA polymerase III su 92.2 2 4.3E-05 39.5 10.9 19 133-151 123-141 (397)
315 PRK04195 replication factor C 92.1 2.5 5.4E-05 39.9 11.8 24 38-61 39-62 (482)
316 PRK14962 DNA polymerase III su 92.1 1.9 4.1E-05 40.5 10.8 20 41-60 39-58 (472)
317 PF06733 DEAD_2: DEAD_2; Inte 92.0 0.1 2.2E-06 41.8 2.2 46 103-151 114-159 (174)
318 PRK08084 DNA replication initi 92.0 1 2.2E-05 38.1 8.2 16 39-54 46-61 (235)
319 PF00004 AAA: ATPase family as 92.0 0.78 1.7E-05 34.3 6.9 15 138-152 59-73 (132)
320 TIGR02397 dnaX_nterm DNA polym 92.0 0.52 1.1E-05 42.4 6.9 21 41-61 39-59 (355)
321 KOG0989|consensus 92.0 0.66 1.4E-05 40.3 6.9 25 40-64 59-83 (346)
322 PRK12903 secA preprotein trans 91.9 1 2.2E-05 44.9 8.9 119 12-150 68-211 (925)
323 PRK05563 DNA polymerase III su 91.8 0.76 1.6E-05 44.1 8.1 17 135-151 117-133 (559)
324 KOG1133|consensus 91.8 0.81 1.8E-05 44.0 7.8 78 222-300 610-720 (821)
325 PTZ00293 thymidine kinase; Pro 91.8 1.5 3.2E-05 36.3 8.5 36 41-92 7-42 (211)
326 PRK11034 clpA ATP-dependent Cl 91.7 1 2.2E-05 44.8 9.0 49 137-185 278-326 (758)
327 COG1202 Superfamily II helicas 91.7 0.41 9E-06 45.0 5.8 83 48-132 198-285 (830)
328 cd00561 CobA_CobO_BtuR ATP:cor 91.6 2.7 5.9E-05 33.1 9.6 52 133-186 91-142 (159)
329 KOG0347|consensus 91.6 0.32 6.9E-06 45.4 4.9 50 4-54 185-235 (731)
330 PRK12422 chromosomal replicati 91.4 1.3 2.8E-05 41.2 8.9 16 136-151 201-216 (445)
331 TIGR03346 chaperone_ClpB ATP-d 91.3 1 2.2E-05 45.7 8.7 22 38-59 194-215 (852)
332 KOG0354|consensus 91.2 0.26 5.6E-06 47.9 4.2 58 65-123 60-121 (746)
333 PRK14957 DNA polymerase III su 91.2 1.6 3.4E-05 41.7 9.3 18 134-151 116-133 (546)
334 PRK00149 dnaA chromosomal repl 91.1 1.8 3.8E-05 40.5 9.6 15 137-151 211-225 (450)
335 KOG4284|consensus 91.1 0.51 1.1E-05 45.0 5.8 68 53-121 34-106 (980)
336 PRK09111 DNA polymerase III su 91.1 2.2 4.8E-05 41.3 10.3 22 40-61 48-69 (598)
337 PRK08116 hypothetical protein; 91.0 9.6 0.00021 32.9 13.4 15 40-54 116-130 (268)
338 PF03354 Terminase_1: Phage Te 91.0 3.6 7.8E-05 38.8 11.6 38 137-179 123-160 (477)
339 PF00580 UvrD-helicase: UvrD/R 90.9 0.29 6.2E-06 43.0 4.0 55 24-93 1-56 (315)
340 PRK14088 dnaA chromosomal repl 90.9 2 4.3E-05 40.1 9.6 15 137-151 194-208 (440)
341 PRK08181 transposase; Validate 90.8 3.2 7E-05 35.8 10.2 17 37-53 105-121 (269)
342 PRK06835 DNA replication prote 90.7 3.3 7.2E-05 36.9 10.4 16 38-53 183-198 (329)
343 KOG0947|consensus 90.6 0.22 4.8E-06 49.3 3.2 64 68-132 298-364 (1248)
344 PRK10689 transcription-repair 90.6 0.47 1E-05 49.4 5.6 67 54-121 588-662 (1147)
345 PRK05703 flhF flagellar biosyn 90.5 9 0.0002 35.5 13.5 56 136-195 298-355 (424)
346 PRK14965 DNA polymerase III su 90.5 3.3 7.2E-05 40.0 11.1 45 134-184 116-160 (576)
347 PRK14722 flhF flagellar biosyn 90.5 4.5 9.8E-05 36.7 11.1 55 136-194 214-269 (374)
348 smart00492 HELICc3 helicase su 90.3 3.2 7E-05 31.9 8.9 52 242-300 24-79 (141)
349 PRK13342 recombination factor 90.2 2.1 4.4E-05 39.6 9.1 17 40-56 38-54 (413)
350 PRK09112 DNA polymerase III su 90.2 6.2 0.00014 35.5 11.8 21 41-61 48-68 (351)
351 TIGR02881 spore_V_K stage V sp 90.2 3.6 7.8E-05 35.3 10.0 17 39-55 43-59 (261)
352 TIGR00362 DnaA chromosomal rep 90.1 1.6 3.5E-05 40.1 8.3 15 137-151 199-213 (405)
353 PRK10865 protein disaggregatio 90.0 1.7 3.7E-05 44.1 8.9 22 38-59 199-220 (857)
354 PF06745 KaiC: KaiC; InterPro 89.9 2.8 6E-05 35.0 9.0 96 38-149 19-127 (226)
355 cd01524 RHOD_Pyr_redox Member 89.8 1.2 2.6E-05 31.1 5.7 37 238-274 50-86 (90)
356 PRK14969 DNA polymerase III su 89.8 2.7 5.9E-05 40.1 9.7 17 135-151 117-133 (527)
357 PRK12899 secA preprotein trans 89.7 0.5 1.1E-05 47.4 4.8 73 21-93 34-118 (970)
358 KOG1001|consensus 89.6 0.94 2E-05 44.2 6.5 132 41-196 155-306 (674)
359 KOG0337|consensus 89.4 0.19 4.2E-06 45.2 1.6 74 46-120 23-102 (529)
360 PRK06921 hypothetical protein; 89.4 3.4 7.5E-05 35.6 9.2 17 38-54 117-133 (266)
361 TIGR02639 ClpA ATP-dependent C 89.4 1.8 3.8E-05 43.2 8.4 20 38-57 203-222 (731)
362 PHA02558 uvsW UvsW helicase; P 89.4 0.41 8.8E-06 45.4 3.8 65 66-131 113-180 (501)
363 PRK14087 dnaA chromosomal repl 89.3 3 6.5E-05 39.0 9.4 15 136-150 205-219 (450)
364 KOG0327|consensus 89.3 0.1 2.2E-06 46.2 -0.3 44 18-61 43-86 (397)
365 PF05496 RuvB_N: Holliday junc 89.0 1.2 2.5E-05 37.2 5.7 13 40-52 52-64 (233)
366 PRK05642 DNA replication initi 88.9 2.3 5E-05 35.9 7.7 45 137-185 97-142 (234)
367 PRK13341 recombination factor 88.8 2.8 6.1E-05 41.6 9.2 39 137-184 109-147 (725)
368 KOG0350|consensus 88.8 2.9 6.3E-05 38.8 8.5 35 58-93 151-194 (620)
369 PRK08699 DNA polymerase III su 88.8 7.3 0.00016 34.7 11.1 17 135-151 111-127 (325)
370 PRK14954 DNA polymerase III su 88.7 4.5 9.7E-05 39.4 10.4 18 134-151 124-141 (620)
371 COG2256 MGS1 ATPase related to 88.7 2.7 5.9E-05 38.0 8.1 37 138-183 105-141 (436)
372 COG3587 Restriction endonuclea 88.3 2.3 4.9E-05 42.1 7.9 116 43-185 79-245 (985)
373 COG3421 Uncharacterized protei 88.3 1.5 3.2E-05 41.7 6.4 47 103-151 76-126 (812)
374 cd01122 GP4d_helicase GP4d_hel 88.1 4.3 9.3E-05 34.9 9.1 23 38-60 30-52 (271)
375 PRK06305 DNA polymerase III su 87.9 2.7 5.8E-05 39.3 8.1 21 41-61 42-62 (451)
376 PRK08903 DnaA regulatory inact 87.9 3.7 8E-05 34.3 8.4 17 38-54 42-58 (227)
377 PRK14970 DNA polymerase III su 87.8 2.8 6E-05 38.0 8.0 19 40-58 41-59 (367)
378 CHL00095 clpC Clp protease ATP 87.7 2.2 4.7E-05 43.2 7.9 34 25-58 184-220 (821)
379 COG1205 Distinct helicase fami 87.5 1.3 2.8E-05 44.8 6.0 66 56-122 60-129 (851)
380 TIGR03420 DnaA_homol_Hda DnaA 87.4 3.9 8.4E-05 34.0 8.2 21 38-58 38-58 (226)
381 smart00491 HELICc2 helicase su 87.2 0.69 1.5E-05 35.7 3.2 20 281-300 59-80 (142)
382 COG0470 HolB ATPase involved i 87.2 4.3 9.3E-05 35.8 8.8 26 38-63 23-49 (325)
383 PRK08058 DNA polymerase III su 87.1 6.3 0.00014 35.2 9.7 46 134-185 107-152 (329)
384 COG0553 HepA Superfamily II DN 87.1 2.1 4.6E-05 43.4 7.6 150 22-195 337-523 (866)
385 PRK08451 DNA polymerase III su 87.0 5 0.00011 38.2 9.3 21 41-61 39-59 (535)
386 TIGR03345 VI_ClpV1 type VI sec 86.7 4.5 9.8E-05 41.1 9.5 22 38-59 208-229 (852)
387 KOG0341|consensus 86.7 0.8 1.7E-05 40.9 3.7 67 52-120 178-258 (610)
388 PRK07399 DNA polymerase III su 86.7 5.3 0.00011 35.4 8.9 45 134-185 121-165 (314)
389 PRK05986 cob(I)alamin adenolsy 86.6 14 0.00029 30.1 10.4 127 37-184 21-159 (191)
390 PF02456 Adeno_IVa2: Adenoviru 86.5 1.4 3.1E-05 38.3 5.0 39 41-93 90-128 (369)
391 KOG0701|consensus 86.4 0.72 1.6E-05 48.9 3.7 77 240-316 293-399 (1606)
392 cd01523 RHOD_Lact_B Member of 86.3 1.2 2.7E-05 31.7 4.0 37 238-274 60-96 (100)
393 TIGR03117 cas_csf4 CRISPR-asso 86.3 1.6 3.4E-05 42.4 5.7 23 34-56 12-34 (636)
394 PRK14950 DNA polymerase III su 86.2 3.7 7.9E-05 39.8 8.3 21 41-61 41-61 (585)
395 KOG0328|consensus 86.2 0.65 1.4E-05 39.7 2.7 38 18-55 44-81 (400)
396 PRK07952 DNA replication prote 86.2 12 0.00025 31.9 10.4 15 136-150 161-175 (244)
397 COG4626 Phage terminase-like p 86.1 14 0.0003 35.0 11.5 60 22-93 60-129 (546)
398 KOG0329|consensus 86.0 2.6 5.5E-05 35.6 6.0 42 51-93 49-90 (387)
399 PRK11054 helD DNA helicase IV; 85.8 1.4 3.1E-05 43.3 5.3 100 7-120 177-279 (684)
400 PRK06647 DNA polymerase III su 85.7 5.8 0.00013 38.2 9.2 18 134-151 116-133 (563)
401 PF00265 TK: Thymidine kinase; 85.6 2 4.3E-05 34.5 5.2 35 42-92 5-39 (176)
402 PRK12900 secA preprotein trans 85.5 3.8 8.3E-05 41.6 8.0 111 23-150 136-271 (1025)
403 KOG2028|consensus 85.4 4.5 9.7E-05 36.3 7.5 52 1-53 122-177 (554)
404 KOG2228|consensus 85.3 5.1 0.00011 35.5 7.8 52 10-61 10-72 (408)
405 PF00154 RecA: recA bacterial 85.2 4.8 0.0001 35.7 7.8 85 41-150 56-144 (322)
406 COG2874 FlaH Predicted ATPases 85.2 20 0.00044 29.7 11.4 127 41-184 31-169 (235)
407 COG2812 DnaX DNA polymerase II 84.8 1.2 2.5E-05 42.0 4.0 19 133-151 115-133 (515)
408 COG2909 MalT ATP-dependent tra 84.8 2.8 6.1E-05 41.5 6.6 42 137-183 129-171 (894)
409 PTZ00112 origin recognition co 84.7 8.1 0.00018 39.1 9.7 37 25-61 760-804 (1164)
410 PRK12726 flagellar biosynthesi 84.6 21 0.00046 32.6 11.5 124 38-192 206-337 (407)
411 cd01121 Sms Sms (bacterial rad 84.5 8.3 0.00018 35.1 9.2 81 41-150 85-171 (372)
412 cd01529 4RHOD_Repeats Member o 84.5 2.2 4.7E-05 30.1 4.5 37 238-274 55-92 (96)
413 PRK06731 flhF flagellar biosyn 84.1 26 0.00056 30.3 11.7 63 128-194 145-208 (270)
414 PHA00350 putative assembly pro 84.1 4.3 9.3E-05 37.1 7.1 30 42-86 5-34 (399)
415 PRK06067 flagellar accessory p 84.1 24 0.00052 29.6 12.7 97 38-150 25-133 (234)
416 PRK14723 flhF flagellar biosyn 84.0 19 0.00042 35.9 12.0 55 136-194 262-317 (767)
417 PRK04841 transcriptional regul 84.0 5.1 0.00011 41.0 8.6 25 37-61 31-55 (903)
418 PRK14086 dnaA chromosomal repl 84.0 4.8 0.0001 38.9 7.7 16 136-151 376-391 (617)
419 cd01518 RHOD_YceA Member of th 83.8 7.9 0.00017 27.5 7.3 37 238-274 60-97 (101)
420 KOG1016|consensus 83.7 2.7 5.9E-05 41.2 5.9 84 239-322 719-841 (1387)
421 COG1484 DnaC DNA replication p 83.6 5.3 0.00012 34.2 7.3 16 37-52 104-119 (254)
422 TIGR02012 tigrfam_recA protein 83.5 4.9 0.00011 35.6 7.2 86 40-150 57-146 (321)
423 PF13871 Helicase_C_4: Helicas 83.5 1.3 2.8E-05 38.2 3.4 31 289-319 87-117 (278)
424 PRK13833 conjugal transfer pro 83.5 2.5 5.5E-05 37.5 5.3 39 22-60 127-166 (323)
425 PF01443 Viral_helicase1: Vira 83.3 2.9 6.2E-05 35.0 5.6 20 42-61 2-21 (234)
426 KOG0349|consensus 83.3 0.44 9.6E-06 43.1 0.5 47 46-93 4-50 (725)
427 PRK11823 DNA repair protein Ra 83.1 13 0.00028 34.8 10.1 82 41-151 83-170 (446)
428 PF05876 Terminase_GpA: Phage 83.1 9.6 0.00021 36.7 9.5 56 23-93 16-73 (557)
429 COG1474 CDC6 Cdc6-related prot 83.1 36 0.00078 30.9 13.2 37 25-61 22-65 (366)
430 PRK12377 putative replication 83.0 9.5 0.00021 32.5 8.5 14 136-149 162-175 (248)
431 KOG0741|consensus 82.5 14 0.0003 35.0 9.7 60 135-198 596-661 (744)
432 PRK12901 secA preprotein trans 82.4 3.8 8.2E-05 41.8 6.6 112 22-150 166-303 (1112)
433 smart00450 RHOD Rhodanese Homo 82.4 2.4 5.2E-05 29.6 4.1 37 238-274 55-92 (100)
434 COG2804 PulE Type II secretory 82.2 2.6 5.6E-05 39.3 5.0 40 22-61 240-281 (500)
435 cd00984 DnaB_C DnaB helicase C 82.2 14 0.0003 31.0 9.4 26 126-151 112-137 (242)
436 PRK00771 signal recognition pa 82.1 36 0.00077 31.7 12.5 52 137-192 175-227 (437)
437 PRK14963 DNA polymerase III su 81.3 20 0.00043 34.1 10.7 20 42-61 40-59 (504)
438 cd00983 recA RecA is a bacter 81.3 6.3 0.00014 35.0 7.0 86 40-150 57-146 (325)
439 PRK08760 replicative DNA helic 81.2 17 0.00036 34.3 10.2 52 128-180 330-387 (476)
440 cd01526 RHOD_ThiF Member of th 81.2 2.1 4.5E-05 31.9 3.5 37 238-274 71-109 (122)
441 PRK09354 recA recombinase A; P 81.1 8 0.00017 34.7 7.6 86 40-150 62-151 (349)
442 PF03796 DnaB_C: DnaB-like hel 80.9 12 0.00026 32.0 8.6 57 124-181 116-179 (259)
443 PRK12727 flagellar biosynthesi 80.6 32 0.0007 32.9 11.6 55 136-194 427-481 (559)
444 PRK00080 ruvB Holliday junctio 80.5 8.9 0.00019 34.1 7.9 20 39-58 52-71 (328)
445 COG2255 RuvB Holliday junction 80.5 4.2 9E-05 35.2 5.3 17 135-151 101-117 (332)
446 COG1618 Predicted nucleotide k 80.4 12 0.00027 29.5 7.4 19 41-59 8-26 (179)
447 PRK05595 replicative DNA helic 80.4 16 0.00036 34.0 9.9 55 126-181 300-360 (444)
448 TIGR03600 phage_DnaB phage rep 80.3 19 0.00041 33.3 10.2 44 137-181 305-353 (421)
449 cd01444 GlpE_ST GlpE sulfurtra 80.3 6.6 0.00014 27.4 5.7 37 238-274 55-92 (96)
450 PRK12898 secA preprotein trans 80.0 3.7 7.9E-05 40.1 5.5 83 57-143 94-178 (656)
451 PRK01415 hypothetical protein; 80.0 6.5 0.00014 33.4 6.4 39 237-275 169-208 (247)
452 TIGR03881 KaiC_arch_4 KaiC dom 79.9 12 0.00027 31.1 8.2 21 38-58 20-40 (229)
453 COG1204 Superfamily II helicas 79.7 1.7 3.7E-05 43.3 3.2 63 63-125 27-93 (766)
454 cd01534 4RHOD_Repeat_3 Member 79.5 3.5 7.6E-05 29.0 4.1 37 238-274 55-91 (95)
455 PF13173 AAA_14: AAA domain 79.4 2 4.3E-05 32.3 2.9 24 38-61 2-25 (128)
456 COG1061 SSL2 DNA or RNA helica 79.3 1.4 3.1E-05 41.0 2.4 28 66-93 35-66 (442)
457 KOG1016|consensus 79.2 2 4.4E-05 42.0 3.4 30 122-151 419-448 (1387)
458 KOG0298|consensus 79.0 2.7 5.9E-05 43.3 4.4 91 229-319 1211-1315(1394)
459 TIGR02655 circ_KaiC circadian 78.7 10 0.00022 35.9 8.0 104 29-149 249-365 (484)
460 PRK05564 DNA polymerase III su 78.7 40 0.00086 29.7 11.4 43 135-183 91-133 (313)
461 cd01527 RHOD_YgaP Member of th 78.6 4 8.7E-05 28.9 4.2 36 238-273 53-89 (99)
462 TIGR02782 TrbB_P P-type conjug 78.6 4.6 9.9E-05 35.5 5.3 37 23-59 116-153 (299)
463 PF14617 CMS1: U3-containing 9 78.5 1.2 2.6E-05 37.9 1.5 36 106-147 175-211 (252)
464 COG0542 clpA ATP-binding subun 78.1 6.8 0.00015 38.9 6.7 24 38-61 191-214 (786)
465 PRK13894 conjugal transfer ATP 78.0 4.8 0.0001 35.7 5.3 38 23-60 132-170 (319)
466 smart00487 DEXDc DEAD-like hel 78.0 2.4 5.1E-05 33.8 3.2 68 63-131 4-76 (201)
467 cd01528 RHOD_2 Member of the R 78.0 7.2 0.00016 27.7 5.4 37 238-274 57-94 (101)
468 TIGR01075 uvrD DNA helicase II 77.9 2.9 6.2E-05 41.7 4.2 85 22-120 3-89 (715)
469 PRK10436 hypothetical protein; 77.6 3.9 8.4E-05 38.3 4.7 39 23-61 201-241 (462)
470 cd01521 RHOD_PspE2 Member of t 77.4 4.6 0.0001 29.3 4.3 37 238-274 63-101 (110)
471 COG0593 DnaA ATPase involved i 77.2 14 0.0003 34.0 7.9 84 106-195 141-234 (408)
472 cd01129 PulE-GspE PulE/GspE Th 76.4 5.3 0.00011 34.4 5.0 39 23-61 63-103 (264)
473 cd01130 VirB11-like_ATPase Typ 76.2 4.5 9.8E-05 32.7 4.3 37 21-57 7-44 (186)
474 PLN02955 8-amino-7-oxononanoat 76.1 11 0.00025 35.3 7.3 27 244-270 398-424 (476)
475 cd01533 4RHOD_Repeat_2 Member 75.6 5.2 0.00011 29.0 4.1 37 238-274 65-103 (109)
476 KOG2036|consensus 75.5 39 0.00084 33.2 10.5 41 278-318 552-594 (1011)
477 TIGR00635 ruvB Holliday juncti 75.3 12 0.00025 32.9 7.0 18 39-56 31-48 (305)
478 TIGR01407 dinG_rel DnaQ family 75.2 6.1 0.00013 40.3 5.8 68 55-125 235-309 (850)
479 TIGR03877 thermo_KaiC_1 KaiC d 75.1 49 0.0011 27.8 10.5 22 38-59 21-42 (237)
480 PF04851 ResIII: Type III rest 75.0 1.8 3.9E-05 34.4 1.7 59 67-129 3-70 (184)
481 cd00158 RHOD Rhodanese Homolog 74.9 6.7 0.00014 26.7 4.4 37 238-274 49-86 (89)
482 cd01535 4RHOD_Repeat_4 Member 74.9 9.8 0.00021 29.4 5.7 38 238-275 48-86 (145)
483 KOG1513|consensus 74.7 3.2 6.9E-05 40.9 3.4 82 104-185 364-457 (1300)
484 cd01532 4RHOD_Repeat_1 Member 74.6 5.6 0.00012 27.8 3.9 37 238-274 49-88 (92)
485 PRK05636 replicative DNA helic 74.6 34 0.00074 32.6 10.2 52 128-180 366-423 (505)
486 TIGR02538 type_IV_pilB type IV 74.3 5 0.00011 38.7 4.7 40 22-61 298-339 (564)
487 PRK11773 uvrD DNA-dependent he 74.3 4.6 9.9E-05 40.3 4.6 85 22-120 8-94 (721)
488 cd01449 TST_Repeat_2 Thiosulfa 74.0 10 0.00023 27.7 5.5 36 238-273 77-113 (118)
489 cd01519 RHOD_HSP67B2 Member of 73.6 5.1 0.00011 28.7 3.6 37 238-274 65-102 (106)
490 PHA03372 DNA packaging termina 73.5 40 0.00087 32.7 10.1 45 8-56 176-220 (668)
491 PRK14721 flhF flagellar biosyn 73.5 52 0.0011 30.5 10.8 57 135-195 267-324 (420)
492 cd01447 Polysulfide_ST Polysul 73.4 3.9 8.5E-05 29.0 3.0 36 238-273 60-96 (103)
493 cd01520 RHOD_YbbB Member of th 73.3 5.7 0.00012 29.8 3.9 37 238-274 85-122 (128)
494 PRK06321 replicative DNA helic 72.8 33 0.00071 32.4 9.6 56 125-181 324-388 (472)
495 PRK00162 glpE thiosulfate sulf 72.5 12 0.00027 26.9 5.5 37 238-274 57-94 (108)
496 TIGR02533 type_II_gspE general 72.1 6.5 0.00014 37.1 4.8 40 22-61 224-265 (486)
497 PRK12724 flagellar biosynthesi 71.8 24 0.00053 32.6 8.2 56 136-195 298-357 (432)
498 TIGR03345 VI_ClpV1 type VI sec 71.2 38 0.00081 34.6 10.2 16 136-151 667-682 (852)
499 PRK05818 DNA polymerase III su 71.2 64 0.0014 27.7 10.1 122 40-192 9-137 (261)
500 PRK09302 circadian clock prote 70.4 19 0.00041 34.3 7.6 96 38-150 273-376 (509)
No 1
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=9.7e-55 Score=418.09 Aligned_cols=298 Identities=41% Similarity=0.693 Sum_probs=258.8
Q ss_pred CCCCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC
Q psy4493 3 PNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK 82 (323)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~ 82 (323)
.+|||+.++...+++.||+..|||.|.++++.++.++|+++++|||+|||.+ +| +|++..+
T Consensus 440 ~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLc----------------YQ---LPAL~~~ 500 (1195)
T PLN03137 440 RNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLT----------------YQ---LPALICP 500 (1195)
T ss_pred cCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHH----------------HH---HHHHHcC
Confidence 3699999999999999999999999999999999999999999999999955 34 4455566
Q ss_pred CcEEEEccchh-------hhhhcCee---e----------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhC
Q psy4493 83 KDAIIIMPTGK-------LLKKKKIC---L----------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAG 136 (323)
Q Consensus 83 ~~~lv~~pTgs-------~l~~~~i~---l----------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~ 136 (323)
.-+||++|+.+ .+...|+. + ....+.++|+|+|||++.....+...+.......
T Consensus 501 GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~ 580 (1195)
T PLN03137 501 GITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRG 580 (1195)
T ss_pred CcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcc
Confidence 77999999999 34455665 2 1122678999999999975444555555544456
Q ss_pred CcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEE
Q psy4493 137 CLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVR 216 (323)
Q Consensus 137 ~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 216 (323)
.+.+|||||||++++||++||+.|..|..++..+++.|+++||||+++...+++.+.|++.++.++..+++++|+.|.+.
T Consensus 581 ~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv 660 (1195)
T PLN03137 581 LLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVV 660 (1195)
T ss_pred ccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEe
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred ecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------c
Q psy4493 217 IKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------S 278 (323)
Q Consensus 217 ~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T 278 (323)
... ......+.+++.....+.++||||+|+++|+.+++.|.+.|+++..|||+|++++ |
T Consensus 661 ~k~---kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVAT 737 (1195)
T PLN03137 661 PKT---KKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICAT 737 (1195)
T ss_pred ccc---hhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 543 2234567777765445678999999999999999999999999999999999988 9
Q ss_pred eeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 279 ~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+++++|||+|+|++|||||+|+++..|+||+|||||+|+.|.|+
T Consensus 738 dAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cI 781 (1195)
T PLN03137 738 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCV 781 (1195)
T ss_pred chhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEE
Confidence 99999999999999999999999999999999999999999987
No 2
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.9e-53 Score=388.29 Aligned_cols=286 Identities=41% Similarity=0.603 Sum_probs=254.0
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEc
Q psy4493 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIM 89 (323)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~ 89 (323)
++...|++.||...||+.|.++|+..+++++.++++|||.|||.+ +| ||+++...-+||+.
T Consensus 4 ~~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlC----------------yQ---iPAll~~G~TLVVS 64 (590)
T COG0514 4 EAQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLC----------------YQ---IPALLLEGLTLVVS 64 (590)
T ss_pred HHHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchH----------------hh---hHHHhcCCCEEEEC
Confidence 456789999999999999999999999999999999999999955 66 55566655799999
Q ss_pred cchh-------hhhhcCee---e--------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEec
Q psy4493 90 PTGK-------LLKKKKIC---L--------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDE 145 (323)
Q Consensus 90 pTgs-------~l~~~~i~---l--------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDE 145 (323)
|-.| .+...|+. | ....+..++++.+||++. ++.|.+.+.. .++.++||||
T Consensus 65 PLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~-~~~f~~~L~~----~~i~l~vIDE 139 (590)
T COG0514 65 PLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLM-SPRFLELLKR----LPISLVAIDE 139 (590)
T ss_pred chHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhc-ChHHHHHHHh----CCCceEEech
Confidence 9999 77788877 2 344567899999999998 6677777763 5899999999
Q ss_pred cccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecCCchhHH
Q psy4493 146 VHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDC 225 (323)
Q Consensus 146 ah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (323)
||++++|||+|||+|.++..++..+|+++++++|||.++.++.+|.+.|++..+.++..++++||+.|.+...... ..+
T Consensus 140 AHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~-~~q 218 (590)
T COG0514 140 AHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEP-SDQ 218 (590)
T ss_pred HHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccH-HHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998876632 223
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeeeccccc
Q psy4493 226 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDK 287 (323)
Q Consensus 226 ~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~~Gid~ 287 (323)
...+.+ ......+++||||.|++.|+.+++.|...|+++..||++|+.++ |.+++.|||-
T Consensus 219 ~~fi~~--~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdK 296 (590)
T COG0514 219 LAFLAT--VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDK 296 (590)
T ss_pred HHHHHh--hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCC
Confidence 333332 12346678999999999999999999999999999999999998 9999999999
Q ss_pred CCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 288 PNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 288 ~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|||++|||||+|.|+++|.|.+|||||+|..+.|+
T Consensus 297 pdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~ai 331 (590)
T COG0514 297 PDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAI 331 (590)
T ss_pred CCceEEEEecCCCCHHHHHHHHhhccCCCCcceEE
Confidence 99999999999999999999999999999999886
No 3
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.5e-51 Score=377.93 Aligned_cols=284 Identities=42% Similarity=0.680 Sum_probs=246.1
Q ss_pred HHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 14 ~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
.|++.||+..|||.|.++++.++.++|+++++|||+|||.. +| +|++..+..++|++||.+
T Consensus 2 ~l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~----------------y~---lp~l~~~~~~lVi~P~~~ 62 (470)
T TIGR00614 2 ILKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLC----------------YQ---LPALCSDGITLVISPLIS 62 (470)
T ss_pred hhHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHH----------------HH---HHHHHcCCcEEEEecHHH
Confidence 68999999999999999999999999999999999999944 22 444556677999999998
Q ss_pred -------hhhhcCee---e--------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccc
Q psy4493 94 -------LLKKKKIC---L--------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCC 149 (323)
Q Consensus 94 -------~l~~~~i~---l--------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~ 149 (323)
.+...|+. + ....+.++++++||+++.....+...+. ...+++++||||||++
T Consensus 63 L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~---~~~~i~~iViDEaH~i 139 (470)
T TIGR00614 63 LMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLE---ERKGITLIAVDEAHCI 139 (470)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHH---hcCCcCEEEEeCCccc
Confidence 55566665 1 1124568999999999975433444442 4568999999999999
Q ss_pred cccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecCCchhHHHHHH
Q psy4493 150 SSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDEL 229 (323)
Q Consensus 150 ~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 229 (323)
++||++||+.|..+..++..+++.+++++|||+++....++.+.+++.++.++..+.+++++.+.+..... +.+..+
T Consensus 140 ~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~---~~~~~l 216 (470)
T TIGR00614 140 SQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTP---KILEDL 216 (470)
T ss_pred CccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCc---cHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888776542 355667
Q ss_pred HHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeeecccccCCcc
Q psy4493 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVR 291 (323)
Q Consensus 230 ~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~ 291 (323)
..++.+..++.++||||+|+++|+.+++.|++.|+.+..|||+|++++ |+++++|+|+|+|+
T Consensus 217 ~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~ 296 (470)
T TIGR00614 217 LRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVR 296 (470)
T ss_pred HHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccce
Confidence 777765556778899999999999999999999999999999999887 99999999999999
Q ss_pred EEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 292 FVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 292 ~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+||++|+|.|...|+||+||+||.|+.|.|+
T Consensus 297 ~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~ 327 (470)
T TIGR00614 297 FVIHYSLPKSMESYYQESGRAGRDGLPSECH 327 (470)
T ss_pred EEEEeCCCCCHHHHHhhhcCcCCCCCCceEE
Confidence 9999999999999999999999999999886
No 4
>KOG0353|consensus
Probab=100.00 E-value=3.9e-51 Score=346.04 Aligned_cols=300 Identities=50% Similarity=0.812 Sum_probs=284.3
Q ss_pred CCCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCC
Q psy4493 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKK 83 (323)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~ 83 (323)
.|||+.+..++|++.|..+.|||.|+.++++...++++++++|||.||+-+ +| +|+++...
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslc----------------yq---lpal~adg 135 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLC----------------YQ---LPALCADG 135 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchh----------------hh---hhHHhcCC
Confidence 599999999999999999999999999999999999999999999999944 55 56677888
Q ss_pred cEEEEccchh-------hhhhcCee---e----------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCC
Q psy4493 84 DAIIIMPTGK-------LLKKKKIC---L----------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGC 137 (323)
Q Consensus 84 ~~lv~~pTgs-------~l~~~~i~---l----------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~ 137 (323)
-.+|+.|..+ .++++||+ | .+.....++++.||+.+.++..|++.++.....+.
T Consensus 136 ~alvi~plislmedqil~lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~ 215 (695)
T KOG0353|consen 136 FALVICPLISLMEDQILQLKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGF 215 (695)
T ss_pred ceEeechhHHHHHHHHHHHHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcce
Confidence 8999999999 77788887 3 67778899999999999999999999999999999
Q ss_pred cceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEe
Q psy4493 138 LARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRI 217 (323)
Q Consensus 138 v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 217 (323)
++++.|||+|+.++|||+||++|..|..+.+.+++.+++++|||.++.+..+....|++..+..+..++++||+.|.+..
T Consensus 216 ~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~q 295 (695)
T KOG0353|consen 216 FKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQ 295 (695)
T ss_pred eEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ce
Q psy4493 218 KPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SI 279 (323)
Q Consensus 218 ~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~ 279 (323)
.+...++..+.+.++++..+.++..||||-|++.|+.++..|+++|+....||+.|.+++ |-
T Consensus 296 kp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatv 375 (695)
T KOG0353|consen 296 KPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATV 375 (695)
T ss_pred CCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEe
Confidence 999999999999999998889999999999999999999999999999999999999998 99
Q ss_pred eeecccccCCccEEEEccCCCCHhHHHH-------------------------------------------HhccCCCCC
Q psy4493 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQ-------------------------------------------VSIAFGLGK 316 (323)
Q Consensus 280 ~~~~Gid~~~v~~Vi~~~~p~~~~~~~q-------------------------------------------r~GR~gR~g 316 (323)
+++.|||-|+|++||+-.+|+|...|.| ..||+||+|
T Consensus 376 afgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~ 455 (695)
T KOG0353|consen 376 AFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD 455 (695)
T ss_pred eecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC
Confidence 9999999999999999999999999999 789999999
Q ss_pred CCCCCC
Q psy4493 317 HSFRSR 322 (323)
Q Consensus 317 ~~g~~~ 322 (323)
++..||
T Consensus 456 ~~a~ci 461 (695)
T KOG0353|consen 456 MKADCI 461 (695)
T ss_pred CcccEE
Confidence 999998
No 5
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=5.3e-49 Score=373.79 Aligned_cols=289 Identities=35% Similarity=0.594 Sum_probs=248.0
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCc
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD 84 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~ 84 (323)
++......+.|++.||+..|||.|.++++.++.++++++++|||+|||.. +| +|++..+..
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~----------------y~---lpal~~~g~ 67 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLC----------------YQ---IPALVLDGL 67 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHH----------------HH---HHHHHcCCC
Confidence 56677788999999999999999999999999999999999999999944 23 455556667
Q ss_pred EEEEccchh-------hhhhcCeee-----------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcce
Q psy4493 85 AIIIMPTGK-------LLKKKKICL-----------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLAR 140 (323)
Q Consensus 85 ~lv~~pTgs-------~l~~~~i~l-----------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~ 140 (323)
++|++||.+ .+...|+.. ....+..+++|+||+++.. ..+.+.+ ...++++
T Consensus 68 tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~-~~~~~~l----~~~~l~~ 142 (607)
T PRK11057 68 TLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMM-DNFLEHL----AHWNPAL 142 (607)
T ss_pred EEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcC-hHHHHHH----hhCCCCE
Confidence 999999999 455556651 1234568999999999973 3343333 2348999
Q ss_pred EEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecCC
Q psy4493 141 IAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPA 220 (323)
Q Consensus 141 vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (323)
|||||||++.+||++||+.|..+..++..+++.+++++|||+++....++.+.+++.++.+...+++++++.|.+....
T Consensus 143 iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~- 221 (607)
T PRK11057 143 LAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKF- 221 (607)
T ss_pred EEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeecc-
Confidence 9999999999999999999999999999999999999999999998889999999999888888899999988765432
Q ss_pred chhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeee
Q psy4493 221 AQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282 (323)
Q Consensus 221 ~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~ 282 (323)
.....+..++.. ..+.++||||+|+++|+.+++.|++.|+++..|||+|++++ |++++
T Consensus 222 ---~~~~~l~~~l~~-~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~ 297 (607)
T PRK11057 222 ---KPLDQLMRYVQE-QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFG 297 (607)
T ss_pred ---chHHHHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhh
Confidence 234566666653 36789999999999999999999999999999999999887 99999
Q ss_pred cccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 283 LGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 283 ~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+|||+|+|++||+||+|.|..+|+||+||+||.|..|.|+
T Consensus 298 ~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~i 337 (607)
T PRK11057 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM 337 (607)
T ss_pred ccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEE
Confidence 9999999999999999999999999999999999999886
No 6
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=6.7e-49 Score=373.88 Aligned_cols=282 Identities=40% Similarity=0.621 Sum_probs=244.6
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccc
Q psy4493 12 RSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT 91 (323)
Q Consensus 12 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pT 91 (323)
.+.|++.||+..||+.|.++++.++.++|+++++|||+|||.. +| +|++..+..++|++|+
T Consensus 2 ~~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~----------------y~---lpal~~~g~~lVisPl 62 (591)
T TIGR01389 2 QQVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLC----------------YQ---VPALLLKGLTVVISPL 62 (591)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHH----------------HH---HHHHHcCCcEEEEcCC
Confidence 4679999999999999999999999999999999999999955 33 4455566678999999
Q ss_pred hh-------hhhhcCeee-----------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccc
Q psy4493 92 GK-------LLKKKKICL-----------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVH 147 (323)
Q Consensus 92 gs-------~l~~~~i~l-----------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah 147 (323)
.+ .+...|+.. ....+..+++++||+++. +..|...+ ...++++|||||||
T Consensus 63 ~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~-~~~~~~~l----~~~~l~~iViDEaH 137 (591)
T TIGR01389 63 ISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLE-QDYFLNML----QRIPIALVAVDEAH 137 (591)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhc-ChHHHHHH----hcCCCCEEEEeCCc
Confidence 99 556666651 123457899999999997 34444433 34589999999999
Q ss_pred cccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecCCchhHHHH
Q psy4493 148 CCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLD 227 (323)
Q Consensus 148 ~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (323)
++++||++||+.|..+..++..+++.+++++|||+++....++..++++.++..+..+.+++++.+.+.... ++..
T Consensus 138 ~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~----~~~~ 213 (591)
T TIGR01389 138 CVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKN----NKQK 213 (591)
T ss_pred ccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCC----CHHH
Confidence 999999999999999999999988889999999999999999999999988888888899999988876543 3455
Q ss_pred HHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeeecccccCC
Q psy4493 228 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPN 289 (323)
Q Consensus 228 ~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~~Gid~~~ 289 (323)
.+.+++..+ .+.++||||+|++.|+.+++.|...|+++..|||+|+.++ |+++++|||+|+
T Consensus 214 ~l~~~l~~~-~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~ 292 (591)
T TIGR01389 214 FLLDYLKKH-RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPN 292 (591)
T ss_pred HHHHHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCC
Confidence 677777643 4789999999999999999999999999999999999877 999999999999
Q ss_pred ccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 290 VRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 290 v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|++||+||+|.|..+|+|++||+||.|+.|.|+
T Consensus 293 v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 293 VRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred CCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 999999999999999999999999999999886
No 7
>KOG0351|consensus
Probab=100.00 E-value=4.5e-48 Score=371.75 Aligned_cols=296 Identities=43% Similarity=0.643 Sum_probs=264.5
Q ss_pred CCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcE
Q psy4493 6 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDA 85 (323)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~ 85 (323)
+|+.+....++..||+..||+.|.+++.+.+.|+|.++.+|||+||+-+ +| +|+++.++-+
T Consensus 247 ~~t~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLC----------------YQ---lPA~l~~git 307 (941)
T KOG0351|consen 247 SETKELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLC----------------YQ---LPALLLGGVT 307 (941)
T ss_pred CcchHHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeE----------------ee---ccccccCCce
Confidence 3777889999999999999999999999999999999999999999944 56 6677888899
Q ss_pred EEEccchh-------hhhhcCee---e----------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcc
Q psy4493 86 IIIMPTGK-------LLKKKKIC---L----------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLA 139 (323)
Q Consensus 86 lv~~pTgs-------~l~~~~i~---l----------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~ 139 (323)
+|++|-.| .+...+|. | .......+|++.|||++..+..+...+.......-+.
T Consensus 308 vVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~la 387 (941)
T KOG0351|consen 308 VVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLA 387 (941)
T ss_pred EEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeE
Confidence 99999999 44445555 2 2333478999999999998766666666555445589
Q ss_pred eEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecC
Q psy4493 140 RIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKP 219 (323)
Q Consensus 140 ~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (323)
++||||||++++|||+||++|.++..++..++..++|++|||++..+++++.+.|++.++.++..+++++|++|++....
T Consensus 388 l~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~ 467 (941)
T KOG0351|consen 388 LFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKT 467 (941)
T ss_pred EEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred CchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceee
Q psy4493 220 AAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 281 (323)
Q Consensus 220 ~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~ 281 (323)
. .+....+...++..+.+..+||||.++++|+.++..|++.|++++.||+||++.+ |=++
T Consensus 468 ~--~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAF 545 (941)
T KOG0351|consen 468 D--KDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAF 545 (941)
T ss_pred C--ccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeec
Confidence 4 3345566677777778999999999999999999999999999999999999998 9999
Q ss_pred ecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 282 GLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 282 ~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+.|||.|||+.||||.+|++.+.|.|-+|||||+|..+.|+
T Consensus 546 GMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~ 586 (941)
T KOG0351|consen 546 GMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCV 586 (941)
T ss_pred cCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeE
Confidence 99999999999999999999999999999999999999886
No 8
>KOG0352|consensus
Probab=100.00 E-value=5e-46 Score=318.77 Aligned_cols=294 Identities=37% Similarity=0.578 Sum_probs=248.9
Q ss_pred cHHHHHHHHHhcCCCCCC-hhHHHHHHHHhc-CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcE
Q psy4493 8 SDRVRSVLKSKFNLTDFR-PNQLAAINIALL-KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDA 85 (323)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~-~~Q~~~~~~~~~-~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~ 85 (323)
...+++.||+.||+..|. +.|.+++..+.+ +.|+.+.||||.|||-+ +| +|+++.+.-+
T Consensus 4 Er~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLC----------------yQ---LPaL~~~gIT 64 (641)
T KOG0352|consen 4 ERKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLC----------------YQ---LPALVHGGIT 64 (641)
T ss_pred HHHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhh----------------hh---chHHHhCCeE
Confidence 346899999999999998 688889987765 67899999999999944 56 4556666678
Q ss_pred EEEccchh-------hhhhcCee-------------------eeccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcc
Q psy4493 86 IIIMPTGK-------LLKKKKIC-------------------LMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLA 139 (323)
Q Consensus 86 lv~~pTgs-------~l~~~~i~-------------------l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~ 139 (323)
||+.|..+ -|..+.++ |.......++++.|||... +..|...|+.......+.
T Consensus 65 IV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AA-t~~FQ~lLn~L~~r~~L~ 143 (641)
T KOG0352|consen 65 IVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAA-TDGFQKLLNGLANRDVLR 143 (641)
T ss_pred EEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhh-hhhHHHHHHHHhhhceee
Confidence 99999998 22333333 1445667899999999998 678888898888888999
Q ss_pred eEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcE-EEecCCCCCCceeEEEec
Q psy4493 140 RIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCV-VIKAPFNRPNLFYEVRIK 218 (323)
Q Consensus 140 ~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 218 (323)
++||||||++++|||+|||+|..|+.|++.+++.++++||||.++++.+++...|.+.+|+ ++.++..+.|++|.+...
T Consensus 144 Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K 223 (641)
T KOG0352|consen 144 YIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMK 223 (641)
T ss_pred eEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998776 677888899999887643
Q ss_pred CCchhHHHHHHHHHHHhhc------------CCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc---------
Q psy4493 219 PAAQKDCLDELADLMSRRF------------RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------- 277 (323)
Q Consensus 219 ~~~~~~~~~~l~~~l~~~~------------~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~--------- 277 (323)
.. ..+-+..|.++-.... ..+-.||||.|+++|+.++-.|..+|+....||+|+...|
T Consensus 224 ~~-I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM 302 (641)
T KOG0352|consen 224 SF-ITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWM 302 (641)
T ss_pred HH-hhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHh
Confidence 32 2333444444432111 1356799999999999999999999999999999999888
Q ss_pred ---------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 ---------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 ---------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|..++.|||-|+|++|||+++|.|+.-|-|..||+||+|+++.|+
T Consensus 303 ~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCR 356 (641)
T KOG0352|consen 303 NNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCR 356 (641)
T ss_pred cCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCcccee
Confidence 999999999999999999999999999999999999999999986
No 9
>KOG0331|consensus
Probab=100.00 E-value=4.8e-45 Score=327.46 Aligned_cols=288 Identities=18% Similarity=0.211 Sum_probs=223.8
Q ss_pred CCCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhc--
Q psy4493 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL-- 81 (323)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~-- 81 (323)
+++-+.+.. .+-+..+++.+.|.|....+.+++|+|++.++.||+|||-. ++..+|..+..
T Consensus 95 ~~~ls~~~~-~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLa----------------y~lP~i~~l~~~~ 157 (519)
T KOG0331|consen 95 ELGLSEELM-KALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLA----------------YLLPAIVHLNNEQ 157 (519)
T ss_pred cccccHHHH-HHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhh----------------hhhHHHHHHHhcc
Confidence 455666543 44455689999999999999999999999999999999944 34444444443
Q ss_pred -------CCcEEEEccchh-------hhhh----cCee---e----------eccCCCeeEEEEcccccccchhHHHHHH
Q psy4493 82 -------KKDAIIIMPTGK-------LLKK----KKIC---L----------MTESSSLKLLYVSPEKLAKSKSFMTKLQ 130 (323)
Q Consensus 82 -------~~~~lv~~pTgs-------~l~~----~~i~---l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~ 130 (323)
+..+||++||.. .... .++. + .......+|+|+||++|.+ +++
T Consensus 158 ~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d------~le 231 (519)
T KOG0331|consen 158 GKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLID------LLE 231 (519)
T ss_pred ccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHH------HHH
Confidence 455999999999 1111 1111 1 4455678999999999985 666
Q ss_pred H-HHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCC-CCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCC-
Q psy4493 131 K-MYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP-DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFN- 207 (323)
Q Consensus 131 ~-~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~- 207 (323)
. ...+.++.++|+||||.|++.| |+++...| +....+ ..|++++|||.+.+++.....+++ ++..+.....
T Consensus 232 ~g~~~l~~v~ylVLDEADrMldmG--Fe~qI~~I--l~~i~~~~rQtlm~saTwp~~v~~lA~~fl~--~~~~i~ig~~~ 305 (519)
T KOG0331|consen 232 EGSLNLSRVTYLVLDEADRMLDMG--FEPQIRKI--LSQIPRPDRQTLMFSATWPKEVRQLAEDFLN--NPIQINVGNKK 305 (519)
T ss_pred cCCccccceeEEEeccHHhhhccc--cHHHHHHH--HHhcCCCcccEEEEeeeccHHHHHHHHHHhc--CceEEEecchh
Confidence 5 4566799999999999999966 99997775 555523 458999999999999887778876 5555544322
Q ss_pred ----CCCceeEEEecCCchhHHHHHHHHHHHhhc--CCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc----
Q psy4493 208 ----RPNLFYEVRIKPAAQKDCLDELADLMSRRF--RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---- 277 (323)
Q Consensus 208 ----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~---- 277 (323)
..++...+..+. ...|...|.++|.+.. .++|+||||+|++.|++++..|+..++++..+||+.++.|
T Consensus 306 ~~~a~~~i~qive~~~--~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~ 383 (519)
T KOG0331|consen 306 ELKANHNIRQIVEVCD--ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWV 383 (519)
T ss_pred hhhhhcchhhhhhhcC--HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHH
Confidence 233332222222 4556666666666543 5679999999999999999999999999999999999999
Q ss_pred --------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 --------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 --------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
||+++||+|+|+|++|||||+|.++++|+||+||+||+|+.|.+.
T Consensus 384 L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~ 442 (519)
T KOG0331|consen 384 LKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAI 442 (519)
T ss_pred HHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEE
Confidence 999999999999999999999999999999999999999999764
No 10
>KOG0330|consensus
Probab=100.00 E-value=4.7e-44 Score=303.36 Aligned_cols=281 Identities=19% Similarity=0.185 Sum_probs=219.4
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC---CcEE
Q psy4493 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK---KDAI 86 (323)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~---~~~l 86 (323)
++.+.+ +..+|..+.+.|.++++.++.|+|++..+-||+|||..+..- .+.++++. ..++
T Consensus 71 ~L~~ac-~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLP----------------Il~~LL~~p~~~~~l 133 (476)
T KOG0330|consen 71 ELLEAC-QELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALP----------------ILQRLLQEPKLFFAL 133 (476)
T ss_pred HHHHHH-HHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHH----------------HHHHHHcCCCCceEE
Confidence 344443 345699999999999999999999999999999999663322 23344443 2489
Q ss_pred EEccchh----------hh-hhcCee---e----------eccCCCeeEEEEcccccccchhHHHHHHH--HHhhCCcce
Q psy4493 87 IIMPTGK----------LL-KKKKIC---L----------MTESSSLKLLYVSPEKLAKSKSFMTKLQK--MYKAGCLAR 140 (323)
Q Consensus 87 v~~pTgs----------~l-~~~~i~---l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~--~~~~~~v~~ 140 (323)
|++||.. .+ ...|+. | ......++|+|+||++|.+ ++++ .+...++++
T Consensus 134 VLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~d------hl~~Tkgf~le~lk~ 207 (476)
T KOG0330|consen 134 VLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWD------HLENTKGFSLEQLKF 207 (476)
T ss_pred EecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHH------HHHhccCccHHHhHH
Confidence 9999998 22 223333 1 4556789999999999976 5653 567789999
Q ss_pred EEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCC---CCceeEEEe
Q psy4493 141 IAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNR---PNLFYEVRI 217 (323)
Q Consensus 141 vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~---~~~~~~~~~ 217 (323)
+|+||||.+++ .+|.+.+..+ ++...+..|.+++|||++.++.+.. .-.+.+|..+..+..- +++...+..
T Consensus 208 LVlDEADrlLd--~dF~~~ld~I--Lk~ip~erqt~LfsATMt~kv~kL~--rasl~~p~~v~~s~ky~tv~~lkQ~ylf 281 (476)
T KOG0330|consen 208 LVLDEADRLLD--MDFEEELDYI--LKVIPRERQTFLFSATMTKKVRKLQ--RASLDNPVKVAVSSKYQTVDHLKQTYLF 281 (476)
T ss_pred HhhchHHhhhh--hhhHHHHHHH--HHhcCccceEEEEEeecchhhHHHH--hhccCCCeEEeccchhcchHHhhhheEe
Confidence 99999999998 4588876665 4444448899999999999886533 2335666666654332 223222222
Q ss_pred cCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ce
Q psy4493 218 KPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SI 279 (323)
Q Consensus 218 ~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~ 279 (323)
.+ ...|-..|+.+++ +..+.+.||||++...+++++-.|++.|+.+..+||.|++.. ||
T Consensus 282 v~--~k~K~~yLV~ll~-e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TD 358 (476)
T KOG0330|consen 282 VP--GKDKDTYLVYLLN-ELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTD 358 (476)
T ss_pred cc--ccccchhHHHHHH-hhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecc
Confidence 22 3445667888887 457799999999999999999999999999999999999998 99
Q ss_pred eeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 280 ~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+.+||+|+|+|++|||||+|.+..+||||+||+||.|+.|++|
T Consensus 359 VaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~I 401 (476)
T KOG0330|consen 359 VASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAI 401 (476)
T ss_pred hhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceE
Confidence 9999999999999999999999999999999999999999886
No 11
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.1e-43 Score=320.29 Aligned_cols=295 Identities=17% Similarity=0.178 Sum_probs=216.3
Q ss_pred CCCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHH-HHhcC
Q psy4493 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAIN-IALLK 82 (323)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~-~~~~~ 82 (323)
++++++.+.+.|.+ .|+..+.+.|.++++.++.++|+++.+|||+|||..+...+...+.-. .... .-..+
T Consensus 12 ~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~-------~~~~~~~~~~ 83 (423)
T PRK04837 12 DFALHPQVVEALEK-KGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSH-------PAPEDRKVNQ 83 (423)
T ss_pred hCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhc-------ccccccccCC
Confidence 35677788888865 699999999999999999999999999999999976554432211000 0000 00123
Q ss_pred CcEEEEccchhh-------h----hhcCeee-------------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCC
Q psy4493 83 KDAIIIMPTGKL-------L----KKKKICL-------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGC 137 (323)
Q Consensus 83 ~~~lv~~pTgs~-------l----~~~~i~l-------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~ 137 (323)
..+++++||.+. + ...++.+ ......++|+|+||+++.+ .+.. .....+
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~------~l~~~~~~l~~ 157 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLID------YAKQNHINLGA 157 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHH------HHHcCCccccc
Confidence 469999999991 1 1223331 1223457999999999974 3332 345678
Q ss_pred cceEEEeccccccccCCCchHHHHhHHHHHhhCC---CCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCC---CCCCc
Q psy4493 138 LARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP---DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPF---NRPNL 211 (323)
Q Consensus 138 v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~---~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~~~~~ 211 (323)
++++|+||||++.++| |...+..+ ....+ ..+.+++|||++..........++ ++..+.... ...++
T Consensus 158 v~~lViDEad~l~~~~--f~~~i~~i---~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~--~p~~i~v~~~~~~~~~i 230 (423)
T PRK04837 158 IQVVVLDEADRMFDLG--FIKDIRWL---FRRMPPANQRLNMLFSATLSYRVRELAFEHMN--NPEYVEVEPEQKTGHRI 230 (423)
T ss_pred ccEEEEecHHHHhhcc--cHHHHHHH---HHhCCCccceeEEEEeccCCHHHHHHHHHHCC--CCEEEEEcCCCcCCCce
Confidence 9999999999999876 66655443 33333 345789999999887665555543 333333221 12223
Q ss_pred eeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc--------------
Q psy4493 212 FYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------------- 277 (323)
Q Consensus 212 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~-------------- 277 (323)
...+.. ....++...+..++.. ....++||||++++.|+.+++.|...|+++..+||++++.+
T Consensus 231 ~~~~~~--~~~~~k~~~l~~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~ 307 (423)
T PRK04837 231 KEELFY--PSNEEKMRLLQTLIEE-EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLD 307 (423)
T ss_pred eEEEEe--CCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCc
Confidence 222222 2345677777777764 35679999999999999999999999999999999999988
Q ss_pred ----ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 ----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 ----T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++++|+|+|+|++||+||+|.+..+|+||+||+||.|+.|.|+
T Consensus 308 vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai 356 (423)
T PRK04837 308 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 356 (423)
T ss_pred EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEE
Confidence 999999999999999999999999999999999999999999886
No 12
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.3e-42 Score=325.87 Aligned_cols=292 Identities=20% Similarity=0.194 Sum_probs=211.1
Q ss_pred cHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHH-HHhcCCCCCCCcchHHHHHHHhcCCcEE
Q psy4493 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSV-LKSKFNLTDFRPNQLAAINIALLKKDAI 86 (323)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~-l~~~~g~~~~~~~Q~~~i~~~~~~~~~l 86 (323)
++.+.+.|+ ..++..+++.|.++++.+++++|+++++|||+|||..+... +..... |. ......+..++
T Consensus 138 ~~~l~~~l~-~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~-------~~--~~~~~~gp~~L 207 (545)
T PTZ00110 138 PDYILKSLK-NAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINA-------QP--LLRYGDGPIVL 207 (545)
T ss_pred CHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHh-------cc--cccCCCCcEEE
Confidence 455666665 45899999999999999999999999999999999764321 111000 00 00001234589
Q ss_pred EEccchh-------hhhhcC----ee---e----------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceE
Q psy4493 87 IIMPTGK-------LLKKKK----IC---L----------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARI 141 (323)
Q Consensus 87 v~~pTgs-------~l~~~~----i~---l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~v 141 (323)
+++||.+ .+...+ +. + ......++|+|+||++|.+ .+.. ...+.++++|
T Consensus 208 IL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d------~l~~~~~~l~~v~~l 281 (545)
T PTZ00110 208 VLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLID------FLESNVTNLRRVTYL 281 (545)
T ss_pred EECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHH------HHHcCCCChhhCcEE
Confidence 9999998 222221 22 1 1223457999999999974 3333 3445689999
Q ss_pred EEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEec-CC---CCCCceeEEEe
Q psy4493 142 AIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKA-PF---NRPNLFYEVRI 217 (323)
Q Consensus 142 VvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~---~~~~~~~~~~~ 217 (323)
|+||||++++++ |++++..+ +....++.|++++|||++.+.......++. .++..+.. .. ...++...+..
T Consensus 282 ViDEAd~mld~g--f~~~i~~i--l~~~~~~~q~l~~SAT~p~~v~~l~~~l~~-~~~v~i~vg~~~l~~~~~i~q~~~~ 356 (545)
T PTZ00110 282 VLDEADRMLDMG--FEPQIRKI--VSQIRPDRQTLMWSATWPKEVQSLARDLCK-EEPVHVNVGSLDLTACHNIKQEVFV 356 (545)
T ss_pred EeehHHhhhhcc--hHHHHHHH--HHhCCCCCeEEEEEeCCCHHHHHHHHHHhc-cCCEEEEECCCccccCCCeeEEEEE
Confidence 999999999976 88876554 334446889999999999877554444443 23333332 11 12333333322
Q ss_pred cCCchhHHHHHHHHHHHhhc-CCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------c
Q psy4493 218 KPAAQKDCLDELADLMSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------S 278 (323)
Q Consensus 218 ~~~~~~~~~~~l~~~l~~~~-~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T 278 (323)
.. ..++...|.+++.... .+.++||||+|++.|+.++..|...|+.+..+||++++++ |
T Consensus 357 ~~--~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaT 434 (545)
T PTZ00110 357 VE--EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIAT 434 (545)
T ss_pred Ee--chhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEc
Confidence 22 2345666666666433 5789999999999999999999999999999999999887 9
Q ss_pred eeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 279 ~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+++++|+|+|+|++||+||+|.+..+|+||+||+||.|+.|.|+
T Consensus 435 dv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai 478 (545)
T PTZ00110 435 DVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASY 478 (545)
T ss_pred chhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEE
Confidence 99999999999999999999999999999999999999999875
No 13
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=4.8e-42 Score=318.42 Aligned_cols=289 Identities=18% Similarity=0.237 Sum_probs=215.0
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCc
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD 84 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~ 84 (323)
++.++.+.+.|.+ .++..++|.|.++++.++.++|+++.+|||+|||..+...+...+... ..+..
T Consensus 9 l~l~~~l~~~l~~-~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~-------------~~~~~ 74 (460)
T PRK11776 9 LPLPPALLANLNE-LGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK-------------RFRVQ 74 (460)
T ss_pred cCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc-------------cCCce
Confidence 4456666666644 689999999999999999999999999999999977555543321100 01225
Q ss_pred EEEEccchh-------hhhhc-----Ceee-------------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCc
Q psy4493 85 AIIIMPTGK-------LLKKK-----KICL-------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCL 138 (323)
Q Consensus 85 ~lv~~pTgs-------~l~~~-----~i~l-------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v 138 (323)
+++++||.+ .+... ++.+ ......++|+|+||+++.+ .+.. .....++
T Consensus 75 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~------~l~~~~~~l~~l 148 (460)
T PRK11776 75 ALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILD------HLRKGTLDLDAL 148 (460)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHH------HHHcCCccHHHC
Confidence 899999998 11211 2221 1223568999999999974 3333 3345689
Q ss_pred ceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEec--CCCCCCceeEEE
Q psy4493 139 ARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKA--PFNRPNLFYEVR 216 (323)
Q Consensus 139 ~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~--~~~~~~~~~~~~ 216 (323)
+++|+||||++.++| |...+..+ +....+..|++++|||+++........++ .++..+.. ....+.+...+.
T Consensus 149 ~~lViDEad~~l~~g--~~~~l~~i--~~~~~~~~q~ll~SAT~~~~~~~l~~~~~--~~~~~i~~~~~~~~~~i~~~~~ 222 (460)
T PRK11776 149 NTLVLDEADRMLDMG--FQDAIDAI--IRQAPARRQTLLFSATYPEGIAAISQRFQ--RDPVEVKVESTHDLPAIEQRFY 222 (460)
T ss_pred CEEEEECHHHHhCcC--cHHHHHHH--HHhCCcccEEEEEEecCcHHHHHHHHHhc--CCCEEEEECcCCCCCCeeEEEE
Confidence 999999999999865 76665443 33333477999999999988755444443 33333332 223333433333
Q ss_pred ecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------c
Q psy4493 217 IKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------S 278 (323)
Q Consensus 217 ~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T 278 (323)
... ..++...+..++.. ....++||||+|++.|+.+++.|.+.++.+..+||++++.+ |
T Consensus 223 ~~~--~~~k~~~l~~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaT 299 (460)
T PRK11776 223 EVS--PDERLPALQRLLLH-HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVAT 299 (460)
T ss_pred EeC--cHHHHHHHHHHHHh-cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEe
Confidence 332 23477778777763 36678999999999999999999999999999999999887 9
Q ss_pred eeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 279 ~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.|+
T Consensus 300 dv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai 343 (460)
T PRK11776 300 DVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLAL 343 (460)
T ss_pred cccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEE
Confidence 99999999999999999999999999999999999999999875
No 14
>KOG0328|consensus
Probab=100.00 E-value=3.1e-43 Score=286.80 Aligned_cols=264 Identities=16% Similarity=0.182 Sum_probs=208.2
Q ss_pred EcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh---------h--------------------
Q psy4493 44 IMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK---------L-------------------- 94 (323)
Q Consensus 44 ~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs---------~-------------------- 94 (323)
.....+|..+.++..+.+ +||+.|+.+|+.||+.+++|+|+++.+..|+ .
T Consensus 27 ~~F~~Mgl~edlLrgiY~-yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTR 105 (400)
T KOG0328|consen 27 PTFDDMGLKEDLLRGIYA-YGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTR 105 (400)
T ss_pred cchhhcCchHHHHHHHHH-hccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChH
Confidence 446799999999999998 9999999999999999999999999999998 1
Q ss_pred ---------hhhcC----ee-------------eeccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceEEEeccc
Q psy4493 95 ---------LKKKK----IC-------------LMTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARIAIDEVH 147 (323)
Q Consensus 95 ---------l~~~~----i~-------------l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~vVvDEah 147 (323)
+..+| +. +....-..+++.+||+++++ .++. ......++++|+||||
T Consensus 106 ELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~d------mikr~~L~tr~vkmlVLDEaD 179 (400)
T KOG0328|consen 106 ELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLD------MIKRRSLRTRAVKMLVLDEAD 179 (400)
T ss_pred HHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHH------HHHhccccccceeEEEeccHH
Confidence 11111 11 02223457999999999986 3333 3455689999999999
Q ss_pred cccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCC---ceeEEEecCCchhH
Q psy4493 148 CCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPN---LFYEVRIKPAAQKD 224 (323)
Q Consensus 148 ~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 224 (323)
.+++.| |..+...+ ++.+.|+.|++++|||+|.++.+-...+ +.+|..+....+... +...+.... .++.
T Consensus 180 emL~kg--fk~Qiydi--yr~lp~~~Qvv~~SATlp~eilemt~kf--mtdpvrilvkrdeltlEgIKqf~v~ve-~Eew 252 (400)
T KOG0328|consen 180 EMLNKG--FKEQIYDI--YRYLPPGAQVVLVSATLPHEILEMTEKF--MTDPVRILVKRDELTLEGIKQFFVAVE-KEEW 252 (400)
T ss_pred HHHHhh--HHHHHHHH--HHhCCCCceEEEEeccCcHHHHHHHHHh--cCCceeEEEecCCCchhhhhhheeeec-hhhh
Confidence 999854 77765443 5556569999999999999987755555 566665554333322 222222222 1234
Q ss_pred HHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeeecccc
Q psy4493 225 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGID 286 (323)
Q Consensus 225 ~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~~Gid 286 (323)
|++.|.++.. ...-.+.+|||||+..+.++.+.+++.++.|...||+|+++| ||+.+||+|
T Consensus 253 KfdtLcdLYd-~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiD 331 (400)
T KOG0328|consen 253 KFDTLCDLYD-TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGID 331 (400)
T ss_pred hHhHHHHHhh-hhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCC
Confidence 6777666655 235689999999999999999999999999999999999999 999999999
Q ss_pred cCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 287 KPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 287 ~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+|.|++|||||+|.+...|+||+||+||.|+.|.+|
T Consensus 332 v~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvai 367 (400)
T KOG0328|consen 332 VQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 367 (400)
T ss_pred cceeEEEEecCCCccHHHHhhhhccccccCCcceEE
Confidence 999999999999999999999999999999999875
No 15
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=8.8e-42 Score=315.56 Aligned_cols=296 Identities=16% Similarity=0.148 Sum_probs=212.2
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCc
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD 84 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~ 84 (323)
++.++++.+.|.+ .++..+++.|.++++.++.++|+++.+|||+|||..+...+...+...... ..-.....
T Consensus 6 l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~-------~~~~~~~~ 77 (456)
T PRK10590 6 LGLSPDILRAVAE-QGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH-------AKGRRPVR 77 (456)
T ss_pred cCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc-------cccCCCce
Confidence 5667778888866 699999999999999999999999999999999977554443311100000 00001125
Q ss_pred EEEEccchh-------hhhh----cCee---e----------eccCCCeeEEEEcccccccchhHHHHHH-HHHhhCCcc
Q psy4493 85 AIIIMPTGK-------LLKK----KKIC---L----------MTESSSLKLLYVSPEKLAKSKSFMTKLQ-KMYKAGCLA 139 (323)
Q Consensus 85 ~lv~~pTgs-------~l~~----~~i~---l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~-~~~~~~~v~ 139 (323)
+++++||.. .+.. .++. + ....+.++|+|+||++|++ .+. ......+++
T Consensus 78 aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~------~~~~~~~~l~~v~ 151 (456)
T PRK10590 78 ALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLD------LEHQNAVKLDQVE 151 (456)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHH------HHHcCCcccccce
Confidence 899999998 1111 1222 1 1223568999999999974 222 233467899
Q ss_pred eEEEeccccccccCCCchHHHHhHHHHHhhC-CCCCEEEEeecCChhHHHHHHHHhCCCCcEEEec-CCCCCCceeEEEe
Q psy4493 140 RIAIDEVHCCSSWGHDFRPDYQYLSILKTMF-PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKA-PFNRPNLFYEVRI 217 (323)
Q Consensus 140 ~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~~~~~~ 217 (323)
++||||||++.+++ |...+.. +...+ +..|++++|||++++........++.+....+.. ....+++...+..
T Consensus 152 ~lViDEah~ll~~~--~~~~i~~---il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~ 226 (456)
T PRK10590 152 ILVLDEADRMLDMG--FIHDIRR---VLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHF 226 (456)
T ss_pred EEEeecHHHHhccc--cHHHHHH---HHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEE
Confidence 99999999999876 5554433 33333 3678999999999887655555543332222211 2223333333332
Q ss_pred cCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ce
Q psy4493 218 KPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SI 279 (323)
Q Consensus 218 ~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~ 279 (323)
.. ...+...+..++. .....++||||+++..|+.+++.|...++.+..+||++++.+ |+
T Consensus 227 ~~--~~~k~~~l~~l~~-~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd 303 (456)
T PRK10590 227 VD--KKRKRELLSQMIG-KGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD 303 (456)
T ss_pred cC--HHHHHHHHHHHHH-cCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc
Confidence 22 2344445555554 335679999999999999999999999999999999999877 99
Q ss_pred eeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 280 ~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
++++|+|+|+|++||+||+|.+..+|+||+||+||.|+.|.|+
T Consensus 304 v~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai 346 (456)
T PRK10590 304 IAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEAL 346 (456)
T ss_pred HHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEE
Confidence 9999999999999999999999999999999999999999875
No 16
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8e-42 Score=317.75 Aligned_cols=288 Identities=22% Similarity=0.250 Sum_probs=222.6
Q ss_pred CcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC-Cc-
Q psy4493 7 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK-KD- 84 (323)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~-~~- 84 (323)
.+.++.+.+++ .++..+.|.|..+++.++.++|++..++||+|||..+..-+.+. +...... ..
T Consensus 36 l~~~ll~~l~~-~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~-------------l~~~~~~~~~~ 101 (513)
T COG0513 36 LSPELLQALKD-LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQK-------------ILKSVERKYVS 101 (513)
T ss_pred CCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHH-------------HhcccccCCCc
Confidence 46677777777 89999999999999999999999999999999997754433221 1100011 12
Q ss_pred EEEEccchh----------hhhh-c-Cee---e----------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCc
Q psy4493 85 AIIIMPTGK----------LLKK-K-KIC---L----------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCL 138 (323)
Q Consensus 85 ~lv~~pTgs----------~l~~-~-~i~---l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v 138 (323)
++|++||.. .+.. . ++. + ......++|+|+||+++++ +++. .....++
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD------~i~~~~l~l~~v 175 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLD------LIKRGKLDLSGV 175 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHH------HHHcCCcchhhc
Confidence 899999999 1111 1 222 1 1222249999999999985 5555 3667799
Q ss_pred ceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecC--C---CCCCcee
Q psy4493 139 ARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAP--F---NRPNLFY 213 (323)
Q Consensus 139 ~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--~---~~~~~~~ 213 (323)
.++|+||||+|++.| |.++...+ +....++.|+++||||++..+......+++ +|..+... . ..+++..
T Consensus 176 ~~lVlDEADrmLd~G--f~~~i~~I--~~~~p~~~qtllfSAT~~~~i~~l~~~~l~--~p~~i~v~~~~~~~~~~~i~q 249 (513)
T COG0513 176 ETLVLDEADRMLDMG--FIDDIEKI--LKALPPDRQTLLFSATMPDDIRELARRYLN--DPVEIEVSVEKLERTLKKIKQ 249 (513)
T ss_pred CEEEeccHhhhhcCC--CHHHHHHH--HHhCCcccEEEEEecCCCHHHHHHHHHHcc--CCcEEEEccccccccccCceE
Confidence 999999999999965 98887664 333333789999999999976665556654 55544443 1 3345554
Q ss_pred EEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc----------------
Q psy4493 214 EVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---------------- 277 (323)
Q Consensus 214 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~---------------- 277 (323)
.+...... .+++..|..++... ...++||||+|+..|+.++..|...|+++..+||+|++++
T Consensus 250 ~~~~v~~~-~~k~~~L~~ll~~~-~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vL 327 (513)
T COG0513 250 FYLEVESE-EEKLELLLKLLKDE-DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVL 327 (513)
T ss_pred EEEEeCCH-HHHHHHHHHHHhcC-CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEE
Confidence 44444432 25888888888743 4457999999999999999999999999999999999998
Q ss_pred --ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 --SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 --T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
||+++||+|+|+|++|||||+|.+...|+||+||+||+|+.|.++
T Consensus 328 VaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai 374 (513)
T COG0513 328 VATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAI 374 (513)
T ss_pred EEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEE
Confidence 999999999999999999999999999999999999999999876
No 17
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.5e-41 Score=317.86 Aligned_cols=293 Identities=18% Similarity=0.179 Sum_probs=210.5
Q ss_pred CcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHh-cCCCCCCCcchHHHHHHHhcCCcE
Q psy4493 7 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKS-KFNLTDFRPNQLAAINIALLKKDA 85 (323)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~-~~g~~~~~~~Q~~~i~~~~~~~~~ 85 (323)
.++.+.+.|++ .|+..++|.|.++++.++.++|+++.+|||+|||..+...+.. ........ ..-..+..+
T Consensus 128 l~~~l~~~L~~-~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~-------~~~~~~~~a 199 (518)
T PLN00206 128 LPPKLLLNLET-AGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGH-------PSEQRNPLA 199 (518)
T ss_pred CCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccc-------ccccCCceE
Confidence 45666777754 6899999999999999999999999999999999765433321 10000000 000124469
Q ss_pred EEEccchhh-------hhh----cCee---e----------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcce
Q psy4493 86 IIIMPTGKL-------LKK----KKIC---L----------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLAR 140 (323)
Q Consensus 86 lv~~pTgs~-------l~~----~~i~---l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~ 140 (323)
++++||.+. +.. .++. + ......++|+|+||++|.+ .+.. .....++++
T Consensus 200 LIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~------~l~~~~~~l~~v~~ 273 (518)
T PLN00206 200 MVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLID------LLSKHDIELDNVSV 273 (518)
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHH------HHHcCCccchheeE
Confidence 999999981 111 1222 1 1224567999999999974 3332 345678999
Q ss_pred EEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEec-CCCCCC--ceeEEEe
Q psy4493 141 IAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKA-PFNRPN--LFYEVRI 217 (323)
Q Consensus 141 vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~--~~~~~~~ 217 (323)
||+||||++.++| |++.+.. +....++.|++++|||++++.... ...+ ..++..+.. ....++ +......
T Consensus 274 lViDEad~ml~~g--f~~~i~~---i~~~l~~~q~l~~SATl~~~v~~l-~~~~-~~~~~~i~~~~~~~~~~~v~q~~~~ 346 (518)
T PLN00206 274 LVLDEVDCMLERG--FRDQVMQ---IFQALSQPQVLLFSATVSPEVEKF-ASSL-AKDIILISIGNPNRPNKAVKQLAIW 346 (518)
T ss_pred EEeecHHHHhhcc--hHHHHHH---HHHhCCCCcEEEEEeeCCHHHHHH-HHHh-CCCCEEEEeCCCCCCCcceeEEEEe
Confidence 9999999999976 8877554 444457889999999999876543 3333 334444443 222332 2222222
Q ss_pred cCCchhHHHHHHHHHHHhhc-CCCcEEEEeCChhHHHHHHHHHHh-CCCeEEeecCCCCCCc------------------
Q psy4493 218 KPAAQKDCLDELADLMSRRF-RNQSGIIYTTSIKECEDLREELRN-RGLRVSAYHAKLESNV------------------ 277 (323)
Q Consensus 218 ~~~~~~~~~~~l~~~l~~~~-~~~~~iVF~~s~~~~~~l~~~L~~-~~~~v~~~h~~~~~~~------------------ 277 (323)
.. ..++...+.+++.... ...++||||+|+..|+.+++.|.. .|+++..+||++++.+
T Consensus 347 ~~--~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVa 424 (518)
T PLN00206 347 VE--TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVA 424 (518)
T ss_pred cc--chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEE
Confidence 22 3345566777775322 346899999999999999999975 6899999999999887
Q ss_pred ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|++++||+|+|+|++||+||+|.+..+|+||+||+||.|+.|.++
T Consensus 425 Tdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai 469 (518)
T PLN00206 425 TGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAI 469 (518)
T ss_pred ecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEE
Confidence 999999999999999999999999999999999999999999875
No 18
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.3e-41 Score=318.59 Aligned_cols=296 Identities=15% Similarity=0.154 Sum_probs=215.5
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHH-HHHhcCC
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAI-NIALLKK 83 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i-~~~~~~~ 83 (323)
++..+.+.+.|+ ..++..+.+.|..+++.++.++|+++.+|||+|||..+...+...+- .. ... ..-..+.
T Consensus 14 l~l~~~l~~~L~-~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~-~~------~~~~~~~~~~~ 85 (572)
T PRK04537 14 FDLHPALLAGLE-SAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLL-SR------PALADRKPEDP 85 (572)
T ss_pred cCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHH-hc------ccccccccCCc
Confidence 445667777775 46999999999999999999999999999999999876554432110 00 000 0000124
Q ss_pred cEEEEccchh-------hhhh----cCee---e----------eccCCCeeEEEEcccccccchhHHHHHHH--HHhhCC
Q psy4493 84 DAIIIMPTGK-------LLKK----KKIC---L----------MTESSSLKLLYVSPEKLAKSKSFMTKLQK--MYKAGC 137 (323)
Q Consensus 84 ~~lv~~pTgs-------~l~~----~~i~---l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~--~~~~~~ 137 (323)
.+|+++||.+ .+.. .++. + ......++|+|+||++|++ .+.. ......
T Consensus 86 raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~------~l~~~~~~~l~~ 159 (572)
T PRK04537 86 RALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLID------YVKQHKVVSLHA 159 (572)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHH------HHHhccccchhh
Confidence 5999999999 2222 2332 1 1223467999999999974 3322 234568
Q ss_pred cceEEEeccccccccCCCchHHHHhHHHHHhhCC---CCCEEEEeecCChhHHHHHHHHhCCCCcEEEecC-CCCCCcee
Q psy4493 138 LARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP---DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAP-FNRPNLFY 213 (323)
Q Consensus 138 v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~---~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~~ 213 (323)
+++|||||||++.+++ |...+.. +....+ +.|+++||||++..+.......+..+....+... ....++..
T Consensus 160 v~~lViDEAh~lld~g--f~~~i~~---il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q 234 (572)
T PRK04537 160 CEICVLDEADRMFDLG--FIKDIRF---LLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQ 234 (572)
T ss_pred eeeeEecCHHHHhhcc--hHHHHHH---HHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeE
Confidence 8999999999999865 6655443 333333 5789999999999877766666543322222221 12222322
Q ss_pred EEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc----------------
Q psy4493 214 EVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---------------- 277 (323)
Q Consensus 214 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~---------------- 277 (323)
.+.. ....++...+..++.. ..+.++||||+|++.|+.+++.|.+.++.+..+||+|++.+
T Consensus 235 ~~~~--~~~~~k~~~L~~ll~~-~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VL 311 (572)
T PRK04537 235 RIYF--PADEEKQTLLLGLLSR-SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311 (572)
T ss_pred EEEe--cCHHHHHHHHHHHHhc-ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 2222 2245567777777763 36789999999999999999999999999999999999987
Q ss_pred --ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 --SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 --T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++++|||+|+|++||+||+|.+..+|+||+||+||.|+.|.|+
T Consensus 312 VaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai 358 (572)
T PRK04537 312 VATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI 358 (572)
T ss_pred EEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEE
Confidence 999999999999999999999999999999999999999999876
No 19
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=7e-41 Score=308.75 Aligned_cols=294 Identities=15% Similarity=0.139 Sum_probs=215.2
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHH-hcCC
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIA-LLKK 83 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~-~~~~ 83 (323)
+..++.+.+.|++ .|+..+++.|.++++.++.++++++.+|||+|||..+...+...+. ..+.. ..+.
T Consensus 6 l~l~~~l~~~l~~-~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~----------~~~~~~~~~~ 74 (434)
T PRK11192 6 LELDESLLEALQD-KGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLL----------DFPRRKSGPP 74 (434)
T ss_pred cCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHh----------hccccCCCCc
Confidence 3445666676665 6999999999999999999999999999999999775433322100 00000 0124
Q ss_pred cEEEEccchh-------hhh----hcCeee-------------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCc
Q psy4493 84 DAIIIMPTGK-------LLK----KKKICL-------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCL 138 (323)
Q Consensus 84 ~~lv~~pTgs-------~l~----~~~i~l-------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v 138 (323)
.+++++||.. .+. ..++.+ ......++|+|+||++|++ .+.. .+...++
T Consensus 75 ~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~------~~~~~~~~~~~v 148 (434)
T PRK11192 75 RILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQ------YIKEENFDCRAV 148 (434)
T ss_pred eEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHH------HHHcCCcCcccC
Confidence 6999999998 111 123331 1223567999999999974 3333 3456789
Q ss_pred ceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCC---CCCCceeEE
Q psy4493 139 ARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPF---NRPNLFYEV 215 (323)
Q Consensus 139 ~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~~~~~~~~~ 215 (323)
++||+||||++.+++ |...+..+ ........|+++||||++.....++...+. .++..+.... ...++...+
T Consensus 149 ~~lViDEah~~l~~~--~~~~~~~i--~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~i~~~~ 223 (434)
T PRK11192 149 ETLILDEADRMLDMG--FAQDIETI--AAETRWRKQTLLFSATLEGDAVQDFAERLL-NDPVEVEAEPSRRERKKIHQWY 223 (434)
T ss_pred CEEEEECHHHHhCCC--cHHHHHHH--HHhCccccEEEEEEeecCHHHHHHHHHHHc-cCCEEEEecCCcccccCceEEE
Confidence 999999999999876 77766554 222223678999999998766666666653 3444443322 233343333
Q ss_pred EecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------
Q psy4493 216 RIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------ 277 (323)
Q Consensus 216 ~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------ 277 (323)
... .....+...+..++.. ....++||||++++.|+.+++.|...|+.+..+||++++.+
T Consensus 224 ~~~-~~~~~k~~~l~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVa 301 (434)
T PRK11192 224 YRA-DDLEHKTALLCHLLKQ-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVA 301 (434)
T ss_pred EEe-CCHHHHHHHHHHHHhc-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEE
Confidence 322 2234566677777653 35689999999999999999999999999999999999887
Q ss_pred ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++++|+|+|++++||+||+|.+...|+||+||+||+|+.|.++
T Consensus 302 Td~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai 346 (434)
T PRK11192 302 TDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAI 346 (434)
T ss_pred ccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEE
Confidence 999999999999999999999999999999999999999999775
No 20
>KOG0342|consensus
Probab=100.00 E-value=6.8e-42 Score=298.18 Aligned_cols=286 Identities=18% Similarity=0.170 Sum_probs=220.5
Q ss_pred CCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhc----
Q psy4493 6 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL---- 81 (323)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~---- 81 (323)
+.++. .....+..|++.+.+.|...+..++.++|+++.+.||+|||-++ -..||+.+.+
T Consensus 88 ~LS~~-t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAF----------------LiPaie~l~k~~~~ 150 (543)
T KOG0342|consen 88 SLSPL-TLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAF----------------LLPAIELLRKLKFK 150 (543)
T ss_pred ccCHH-HHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeee----------------hhHHHHHHHhcccC
Confidence 33443 34445667999999999999999999999999999999999442 1223333332
Q ss_pred ---CCcEEEEccchh-hhh-------------hcCeee-----------eccCCCeeEEEEcccccccchhHHHHHHH--
Q psy4493 82 ---KKDAIIIMPTGK-LLK-------------KKKICL-----------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-- 131 (323)
Q Consensus 82 ---~~~~lv~~pTgs-~l~-------------~~~i~l-----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-- 131 (323)
+-.++|++||.. +++ ..++.+ ......+.++|+||++|++ ++++
T Consensus 151 ~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlD------HlqNt~ 224 (543)
T KOG0342|consen 151 PRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLD------HLQNTS 224 (543)
T ss_pred CCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHh------HhhcCC
Confidence 234899999999 111 112221 2223378999999999986 5655
Q ss_pred HHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCC-CCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCC
Q psy4493 132 MYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP-DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPN 210 (323)
Q Consensus 132 ~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 210 (323)
.+...+++++|+||||++++.| |+.++.++ ...+| ..|.++||||.++++.+...-.|+- ++..+..-....+
T Consensus 225 ~f~~r~~k~lvlDEADrlLd~G--F~~di~~I---i~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~-d~~~v~~~d~~~~ 298 (543)
T KOG0342|consen 225 GFLFRNLKCLVLDEADRLLDIG--FEEDVEQI---IKILPKQRQTLLFSATQPSKVKDLARGALKR-DPVFVNVDDGGER 298 (543)
T ss_pred cchhhccceeEeecchhhhhcc--cHHHHHHH---HHhccccceeeEeeCCCcHHHHHHHHHhhcC-CceEeecCCCCCc
Confidence 3455678999999999999976 99987775 33334 7899999999999987766666654 6777765322211
Q ss_pred -----ceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc--------
Q psy4493 211 -----LFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------- 277 (323)
Q Consensus 211 -----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~-------- 277 (323)
+...+.. .+....+..++.+++++..+.++||||+|+..+..+++.|+...+.|..+||+.++..
T Consensus 299 ~The~l~Qgyvv--~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F 376 (543)
T KOG0342|consen 299 ETHERLEQGYVV--APSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEF 376 (543)
T ss_pred chhhcccceEEe--ccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHH
Confidence 1111111 2234458899999997766699999999999999999999999999999999999988
Q ss_pred ----------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 ----------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 ----------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
||+.+||+|+|+|+.||+||+|.++.+||||+||+||.|+.|++.
T Consensus 377 ~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~al 431 (543)
T KOG0342|consen 377 CKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKAL 431 (543)
T ss_pred hhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEE
Confidence 999999999999999999999999999999999999999999875
No 21
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.8e-41 Score=311.58 Aligned_cols=298 Identities=16% Similarity=0.152 Sum_probs=211.9
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCc
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD 84 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~ 84 (323)
+..++.+.+.|.+ .|+..++++|.++++.++.|+|+++.+|||+|||..+.-.+...+. ..+.+ +. ....+..
T Consensus 92 ~~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~-~~~~~-~~----~~~~~~~ 164 (475)
T PRK01297 92 FNLAPELMHAIHD-LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLL-QTPPP-KE----RYMGEPR 164 (475)
T ss_pred CCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHH-hcCcc-cc----cccCCce
Confidence 3346677788876 7999999999999999999999999999999999664433221100 00000 00 0001245
Q ss_pred EEEEccchh-------hhhh----cCeee--------------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCc
Q psy4493 85 AIIIMPTGK-------LLKK----KKICL--------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCL 138 (323)
Q Consensus 85 ~lv~~pTgs-------~l~~----~~i~l--------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v 138 (323)
+++++||.+ .+.. .++.+ ......++|+|+||++|+. .... ...+.++
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~------~~~~~~~~l~~l 238 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLD------FNQRGEVHLDMV 238 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHH------HHHcCCcccccC
Confidence 899999999 1211 23331 1123567999999999964 2222 3456789
Q ss_pred ceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecC---CCCCCceeEE
Q psy4493 139 ARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAP---FNRPNLFYEV 215 (323)
Q Consensus 139 ~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~~~~~~~~~ 215 (323)
++|||||||.+.+++ |.+.+..+........+.|++++|||++....+....++. ++..+... ...+++...+
T Consensus 239 ~~lViDEah~l~~~~--~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~ 314 (475)
T PRK01297 239 EVMVLDEADRMLDMG--FIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTT--DPAIVEIEPENVASDTVEQHV 314 (475)
T ss_pred ceEEechHHHHHhcc--cHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhcc--CCEEEEeccCcCCCCcccEEE
Confidence 999999999998865 6666555422111122568999999999877665555543 33333221 1122332222
Q ss_pred EecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------
Q psy4493 216 RIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------ 277 (323)
Q Consensus 216 ~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------ 277 (323)
.... ..++...+..++.. ....++||||+++++|+.+++.|.+.|+.+..+||+++.++
T Consensus 315 ~~~~--~~~k~~~l~~ll~~-~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLva 391 (475)
T PRK01297 315 YAVA--GSDKYKLLYNLVTQ-NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVA 391 (475)
T ss_pred EEec--chhHHHHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEE
Confidence 2222 24456667776663 35579999999999999999999999999999999999887
Q ss_pred ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++++|+|+|++++||+||+|.|..+|+||+||+||.|+.|.++
T Consensus 392 T~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i 436 (475)
T PRK01297 392 TDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSI 436 (475)
T ss_pred ccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEE
Confidence 999999999999999999999999999999999999999999775
No 22
>KOG0333|consensus
Probab=100.00 E-value=4.6e-41 Score=294.71 Aligned_cols=300 Identities=21% Similarity=0.216 Sum_probs=223.1
Q ss_pred cHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEE
Q psy4493 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAII 87 (323)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv 87 (323)
+.++.+ +.+..++..+.|.|+.++...++.+|++.++-||+|||..++.-|..++--..+.+ .+.....|.-.++
T Consensus 253 P~e~l~-~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~----~~en~~~gpyaii 327 (673)
T KOG0333|consen 253 PLELLS-VIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMA----RLENNIEGPYAII 327 (673)
T ss_pred CHHHHH-HHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcc----hhhhcccCceeee
Confidence 455566 55667899999999999999999999999999999999554433333221111111 1222346788999
Q ss_pred Eccchh-----------hhhhcCee---e----------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEE
Q psy4493 88 IMPTGK-----------LLKKKKIC---L----------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAI 143 (323)
Q Consensus 88 ~~pTgs-----------~l~~~~i~---l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVv 143 (323)
.+||.. -..-.|+. + ......++|+|+||++|.++ +-+....+.+..+||+
T Consensus 328 laptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~-----Lenr~lvl~qctyvvl 402 (673)
T KOG0333|consen 328 LAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDS-----LENRYLVLNQCTYVVL 402 (673)
T ss_pred echHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHH-----HHHHHHHhccCceEec
Confidence 999999 11112333 1 24456799999999999862 2233456678899999
Q ss_pred eccccccccCCCchHHHHhHHH-------------------HHhhCC--C--CCEEEEeecCChhHHHHHHHHhCCCCcE
Q psy4493 144 DEVHCCSSWGHDFRPDYQYLSI-------------------LKTMFP--D--VPILGLTATATTKVMLDVQKMLQIEDCV 200 (323)
Q Consensus 144 DEah~~~~~~~~~r~~~~~l~~-------------------l~~~~~--~--~~~i~lSAT~~~~~~~~i~~~l~~~~~~ 200 (323)
|||+.|.+.| |.+++..+-. ++..+. . .|.++||||+++.+......+| .+|.
T Consensus 403 deadrmiDmg--fE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~yl--r~pv 478 (673)
T KOG0333|consen 403 DEADRMIDMG--FEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYL--RRPV 478 (673)
T ss_pred cchhhhhccc--ccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHh--hCCe
Confidence 9999999976 8888755411 111111 1 5789999999998876666664 4555
Q ss_pred EEec-CCCCCCceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc--
Q psy4493 201 VIKA-PFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-- 277 (323)
Q Consensus 201 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~-- 277 (323)
++.. +..++.......-.--...+++..|.+++... ...++|||+|+++.|+.+|+.|.+.|+++..+||+-++++
T Consensus 479 ~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe 557 (673)
T KOG0333|consen 479 VVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRE 557 (673)
T ss_pred EEEeccCCCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHH
Confidence 5543 33344332222222222345688999999854 5789999999999999999999999999999999999998
Q ss_pred ----------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 ----------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 ----------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
||+++||||+|+|++|||||++++..+|+||+||+||+|+.|.++
T Consensus 558 ~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gtai 618 (673)
T KOG0333|consen 558 NALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAI 618 (673)
T ss_pred HHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeE
Confidence 999999999999999999999999999999999999999999876
No 23
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.1e-40 Score=313.86 Aligned_cols=287 Identities=13% Similarity=0.162 Sum_probs=214.1
Q ss_pred CcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEE
Q psy4493 7 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAI 86 (323)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~l 86 (323)
.++.+.+.|.+ .|+..++|.|.++++.++.++++++.+|||+|||..+...+... +..-..+..+|
T Consensus 13 L~~~ll~al~~-~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~-------------l~~~~~~~~~L 78 (629)
T PRK11634 13 LKAPILEALND-LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHN-------------LDPELKAPQIL 78 (629)
T ss_pred CCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHH-------------hhhccCCCeEE
Confidence 46667777754 69999999999999999999999999999999997754443221 11112334689
Q ss_pred EEccchh-------hhhhc-----Ceee-------------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcce
Q psy4493 87 IIMPTGK-------LLKKK-----KICL-------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLAR 140 (323)
Q Consensus 87 v~~pTgs-------~l~~~-----~i~l-------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~ 140 (323)
+++||.+ .+... ++.+ ......++|+|+||+++.+ .+.. .....++++
T Consensus 79 IL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d------~l~r~~l~l~~l~~ 152 (629)
T PRK11634 79 VLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLD------HLKRGTLDLSKLSG 152 (629)
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHH------HHHcCCcchhhceE
Confidence 9999998 11111 3331 1223468999999999974 3332 345678999
Q ss_pred EEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEec---CCCCCCceeEEEe
Q psy4493 141 IAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKA---PFNRPNLFYEVRI 217 (323)
Q Consensus 141 vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~~~~~~~~ 217 (323)
||+||||++++++ |...+..+ +.......|+++||||+++.+.....+++. ++..+.. ....+++...+..
T Consensus 153 lVlDEAd~ml~~g--f~~di~~I--l~~lp~~~q~llfSAT~p~~i~~i~~~~l~--~~~~i~i~~~~~~~~~i~q~~~~ 226 (629)
T PRK11634 153 LVLDEADEMLRMG--FIEDVETI--MAQIPEGHQTALFSATMPEAIRRITRRFMK--EPQEVRIQSSVTTRPDISQSYWT 226 (629)
T ss_pred EEeccHHHHhhcc--cHHHHHHH--HHhCCCCCeEEEEEccCChhHHHHHHHHcC--CCeEEEccCccccCCceEEEEEE
Confidence 9999999999865 66654432 333334789999999999887665555543 3333322 2223444333332
Q ss_pred cCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ce
Q psy4493 218 KPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SI 279 (323)
Q Consensus 218 ~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~ 279 (323)
.. ..++...|..++.. ....++||||+|+..|+.+++.|.+.|+.+..+||+|++.+ |+
T Consensus 227 v~--~~~k~~~L~~~L~~-~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATd 303 (629)
T PRK11634 227 VW--GMRKNEALVRFLEA-EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303 (629)
T ss_pred ec--hhhHHHHHHHHHHh-cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcc
Confidence 22 34566677777763 35578999999999999999999999999999999999987 99
Q ss_pred eeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 280 ~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
++++|+|+|+|++||+||+|.+..+|+||+||+||.|+.|.|+
T Consensus 304 v~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai 346 (629)
T PRK11634 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAL 346 (629)
T ss_pred hHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEE
Confidence 9999999999999999999999999999999999999999876
No 24
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=7.4e-40 Score=299.59 Aligned_cols=290 Identities=17% Similarity=0.183 Sum_probs=207.9
Q ss_pred CcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEE
Q psy4493 7 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAI 86 (323)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~l 86 (323)
-++.+.+.|.+ +++..+++.|.++++.++.+++.++.+|||+|||......+...+.. -..+..++
T Consensus 35 l~~~~~~~l~~-~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~-------------~~~~~~~l 100 (401)
T PTZ00424 35 LNEDLLRGIYS-YGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY-------------DLNACQAL 100 (401)
T ss_pred CCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC-------------CCCCceEE
Confidence 34455555543 68899999999999999999999999999999997655443321110 01345699
Q ss_pred EEccchh-------hhhhc----Cee---e----------eccCCCeeEEEEcccccccchhHHHHHH-HHHhhCCcceE
Q psy4493 87 IIMPTGK-------LLKKK----KIC---L----------MTESSSLKLLYVSPEKLAKSKSFMTKLQ-KMYKAGCLARI 141 (323)
Q Consensus 87 v~~pTgs-------~l~~~----~i~---l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~-~~~~~~~v~~v 141 (323)
+++||.+ .+... ++. + ......++|+|+||+++.. .+. ......+++++
T Consensus 101 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~------~l~~~~~~l~~i~lv 174 (401)
T PTZ00424 101 ILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYD------MIDKRHLRVDDLKLF 174 (401)
T ss_pred EECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHH------HHHhCCcccccccEE
Confidence 9999998 11111 111 0 1122346899999999864 222 23346789999
Q ss_pred EEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEec-CCCCCCceeEEEecCC
Q psy4493 142 AIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKA-PFNRPNLFYEVRIKPA 220 (323)
Q Consensus 142 VvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ 220 (323)
||||||++.+++ ++..+..+ +....++.|++++|||++++..+....++..+....+.. ......+...+....
T Consensus 175 ViDEah~~~~~~--~~~~~~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 249 (401)
T PTZ00424 175 ILDEADEMLSRG--FKGQIYDV--FKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVE- 249 (401)
T ss_pred EEecHHHHHhcc--hHHHHHHH--HhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecC-
Confidence 999999998855 66554333 445556889999999999877655555543222111211 112222322222222
Q ss_pred chhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeee
Q psy4493 221 AQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282 (323)
Q Consensus 221 ~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~ 282 (323)
....+...+..++.. ....++||||+|++.|+.+++.|.+.++.+..+||++++.+ |++++
T Consensus 250 ~~~~~~~~l~~~~~~-~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~ 328 (401)
T PTZ00424 250 KEEWKFDTLCDLYET-LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLA 328 (401)
T ss_pred hHHHHHHHHHHHHHh-cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEccccc
Confidence 223355556666553 35678999999999999999999999999999999999887 99999
Q ss_pred cccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 283 LGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 283 ~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+|+|+|++++||++|+|.+..+|+||+||+||.|+.|.|+
T Consensus 329 ~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i 368 (401)
T PTZ00424 329 RGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAI 368 (401)
T ss_pred CCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEE
Confidence 9999999999999999999999999999999999999886
No 25
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.1e-39 Score=312.70 Aligned_cols=289 Identities=16% Similarity=0.140 Sum_probs=202.0
Q ss_pred cHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC--CcE
Q psy4493 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK--KDA 85 (323)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~--~~~ 85 (323)
++++.+.|+ ..|+..++++|.++++.++.|+++++.+|||+|||.+... .++..+.++ ..+
T Consensus 22 ~~~l~~~L~-~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~L----------------PiL~~l~~~~~~~a 84 (742)
T TIGR03817 22 HPDVVAALE-AAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQL----------------PVLSALADDPRATA 84 (742)
T ss_pred CHHHHHHHH-HcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHH----------------HHHHHHhhCCCcEE
Confidence 556777775 4689999999999999999999999999999999976433 233333332 358
Q ss_pred EEEccchh-------hhhhc---Ceee------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEE
Q psy4493 86 IIIMPTGK-------LLKKK---KICL------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAI 143 (323)
Q Consensus 86 lv~~pTgs-------~l~~~---~i~l------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVv 143 (323)
++++||.+ .+... ++.. ......++|+|+||+++... .+....+....+.++++|||
T Consensus 85 L~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~-~L~~~~~~~~~l~~l~~vVi 163 (742)
T TIGR03817 85 LYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRG-ILPSHARWARFLRRLRYVVI 163 (742)
T ss_pred EEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHh-hccchhHHHHHHhcCCEEEE
Confidence 99999999 33332 3331 11234579999999998621 11111111223568999999
Q ss_pred eccccccccCCCchHH----HHhHHHHHhhCC-CCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCC-CceeEEEe
Q psy4493 144 DEVHCCSSWGHDFRPD----YQYLSILKTMFP-DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRP-NLFYEVRI 217 (323)
Q Consensus 144 DEah~~~~~~~~~r~~----~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~~~~~ 217 (323)
||||.+.+ .|... +.++..+....+ +.|++++|||+++.. +....+++. +..++.....+. ...+.+..
T Consensus 164 DEah~~~g---~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~-~~~~~l~g~-~~~~i~~~~~~~~~~~~~~~~ 238 (742)
T TIGR03817 164 DECHSYRG---VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPA-AAASRLIGA-PVVAVTEDGSPRGARTVALWE 238 (742)
T ss_pred eChhhccC---ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHH-HHHHHHcCC-CeEEECCCCCCcCceEEEEec
Confidence 99999864 23333 333333433333 679999999999874 334445443 333333222211 12221111
Q ss_pred cC--------------CchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhC--------CCeEEeecCCCCC
Q psy4493 218 KP--------------AAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR--------GLRVSAYHAKLES 275 (323)
Q Consensus 218 ~~--------------~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~--------~~~v~~~h~~~~~ 275 (323)
.. ....++...+..++. .+.++||||+|++.|+.++..|++. +.++..|||++++
T Consensus 239 p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~ 315 (742)
T TIGR03817 239 PPLTELTGENGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLP 315 (742)
T ss_pred CCccccccccccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCH
Confidence 10 011234555555555 4689999999999999999998763 5678999999999
Q ss_pred Cc------------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 276 NV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 276 ~~------------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
++ |+++++|||+|++++||++|+|.+..+|+||+||+||.|+.|.++
T Consensus 316 ~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai 380 (742)
T TIGR03817 316 EDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVV 380 (742)
T ss_pred HHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEE
Confidence 88 999999999999999999999999999999999999999999875
No 26
>KOG0345|consensus
Probab=100.00 E-value=1.7e-39 Score=281.63 Aligned_cols=291 Identities=18% Similarity=0.187 Sum_probs=219.3
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcC--CCCCCCcchHHHHHHHhcC
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKF--NLTDFRPNQLAAINIALLK 82 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~--g~~~~~~~Q~~~i~~~~~~ 82 (323)
.|.++++.+.+ ...|++.+.|.|..+++..+.++|+++.++||+|||.+++.-+.... +-....|.|
T Consensus 11 ~~L~~~l~~~l-~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~---------- 79 (567)
T KOG0345|consen 11 PPLSPWLLEAL-DESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQ---------- 79 (567)
T ss_pred CCccHHHHHHH-HhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccc----------
Confidence 34456555554 45689999999999999999999999999999999976544332211 011111111
Q ss_pred CcEEEEccchh--------------hhhhcCeee------------eccCCCeeEEEEcccccccchhHHHHHHH---HH
Q psy4493 83 KDAIIIMPTGK--------------LLKKKKICL------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK---MY 133 (323)
Q Consensus 83 ~~~lv~~pTgs--------------~l~~~~i~l------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~---~~ 133 (323)
-..+|++||.. .+......+ ......+.|+|+||++|.+ .+.. ..
T Consensus 80 vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~d------i~~~~~~~l 153 (567)
T KOG0345|consen 80 VGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLD------ILQREAEKL 153 (567)
T ss_pred eeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHH------HHhchhhhc
Confidence 13699999998 111122221 3345677899999999975 3333 23
Q ss_pred hhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCC-CCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCC----
Q psy4493 134 KAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP-DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNR---- 208 (323)
Q Consensus 134 ~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~---- 208 (323)
....+.++|+||||++++.| |..+... +.+.+| +.+.=+||||-..+..+ ....|+.|+..+......
T Consensus 154 ~~rsLe~LVLDEADrLldmg--Fe~~~n~---ILs~LPKQRRTGLFSATq~~~v~d--L~raGLRNpv~V~V~~k~~~~t 226 (567)
T KOG0345|consen 154 SFRSLEILVLDEADRLLDMG--FEASVNT---ILSFLPKQRRTGLFSATQTQEVED--LARAGLRNPVRVSVKEKSKSAT 226 (567)
T ss_pred cccccceEEecchHhHhccc--HHHHHHH---HHHhcccccccccccchhhHHHHH--HHHhhccCceeeeecccccccC
Confidence 45589999999999999976 8887666 445555 77888999999987654 344578888877653322
Q ss_pred -CCceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhC--CCeEEeecCCCCCCc--------
Q psy4493 209 -PNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR--GLRVSAYHAKLESNV-------- 277 (323)
Q Consensus 209 -~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~--~~~v~~~h~~~~~~~-------- 277 (323)
..+..++.. .....++..+++++.+ ....++|||.+|+..++..+..+... ...+..+||.|++.+
T Consensus 227 PS~L~~~Y~v--~~a~eK~~~lv~~L~~-~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F 303 (567)
T KOG0345|consen 227 PSSLALEYLV--CEADEKLSQLVHLLNN-NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAF 303 (567)
T ss_pred chhhcceeeE--ecHHHHHHHHHHHHhc-cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHH
Confidence 223333332 3356789999999985 47789999999999999998888764 678999999999996
Q ss_pred ----------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 ----------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 ----------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
||+++||+|+|+|++||+||+|.++..|.||+||+||.|++|++|
T Consensus 304 ~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Ai 358 (567)
T KOG0345|consen 304 RKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAI 358 (567)
T ss_pred HhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceE
Confidence 999999999999999999999999999999999999999999987
No 27
>KOG0343|consensus
Probab=100.00 E-value=8.1e-40 Score=288.45 Aligned_cols=290 Identities=21% Similarity=0.260 Sum_probs=223.6
Q ss_pred CCCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHH-HHHHhcC--CCCCCCcchHHHHHHHh
Q psy4493 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVR-SVLKSKF--NLTDFRPNQLAAINIAL 80 (323)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~-~~l~~~~--g~~~~~~~Q~~~i~~~~ 80 (323)
.||.+....+.|+.. ++-.+...|.++|..++.|+|++-.+.||+|||-+++ -.|.+++ +|+. .
T Consensus 73 dlpls~~t~kgLke~-~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~------------~ 139 (758)
T KOG0343|consen 73 DLPLSQKTLKGLKEA-KFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSP------------T 139 (758)
T ss_pred hCCCchHHHHhHhhc-CCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCC------------C
Confidence 478888888888765 5667788999999999999999999999999994322 2222211 1111 1
Q ss_pred cCCcEEEEccchh-------hhhhcCee------e----------eccCCCeeEEEEcccccccchhHHHHHHH--HHhh
Q psy4493 81 LKKDAIIIMPTGK-------LLKKKKIC------L----------MTESSSLKLLYVSPEKLAKSKSFMTKLQK--MYKA 135 (323)
Q Consensus 81 ~~~~~lv~~pTgs-------~l~~~~i~------l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~--~~~~ 135 (323)
.|-.+||+.||.. .|.+.|-. | ...-....|+||||++|++ ++.. .+..
T Consensus 140 DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQ------Hmde~~~f~t 213 (758)
T KOG0343|consen 140 DGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQ------HMDENPNFST 213 (758)
T ss_pred CCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHH------HhhhcCCCCC
Confidence 2445899999999 33333332 1 3344567899999999986 4444 3556
Q ss_pred CCcceEEEeccccccccCCCchHHHHhHHHHHhhCC-CCCEEEEeecCChhHHHHHHHHhCCCCcEEEecC-----CCCC
Q psy4493 136 GCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP-DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAP-----FNRP 209 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~ 209 (323)
.++.++|+||||++++.| |...+.. +...+| ..|.++||||.+..+.+ +.+ |.+.+|.++... ..+.
T Consensus 214 ~~lQmLvLDEADR~LDMG--Fk~tL~~---Ii~~lP~~RQTLLFSATqt~svkd-LaR-LsL~dP~~vsvhe~a~~atP~ 286 (758)
T KOG0343|consen 214 SNLQMLVLDEADRMLDMG--FKKTLNA---IIENLPKKRQTLLFSATQTKSVKD-LAR-LSLKDPVYVSVHENAVAATPS 286 (758)
T ss_pred CcceEEEeccHHHHHHHh--HHHHHHH---HHHhCChhheeeeeecccchhHHH-HHH-hhcCCCcEEEEeccccccChh
Confidence 689999999999999976 8776544 555555 88999999999987644 333 456777776653 1233
Q ss_pred CceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhC--CCeEEeecCCCCCCc----------
Q psy4493 210 NLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR--GLRVSAYHAKLESNV---------- 277 (323)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~--~~~v~~~h~~~~~~~---------- 277 (323)
++...+..++ ..++++.|+.+++.+ ...+.|||.+|++++..+++.+.+. |+++..+||+|++..
T Consensus 287 ~L~Q~y~~v~--l~~Ki~~L~sFI~sh-lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~ 363 (758)
T KOG0343|consen 287 NLQQSYVIVP--LEDKIDMLWSFIKSH-LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVR 363 (758)
T ss_pred hhhheEEEEe--hhhHHHHHHHHHHhc-cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHH
Confidence 3432222222 567899999999864 7789999999999999999999875 889999999999987
Q ss_pred --------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 --------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 --------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
||+++||+|||.|++||++|+|.++.+|+||+||++|.+..|.|.
T Consensus 364 ~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sl 416 (758)
T KOG0343|consen 364 KRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESL 416 (758)
T ss_pred hcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceE
Confidence 999999999999999999999999999999999999999999875
No 28
>KOG0338|consensus
Probab=100.00 E-value=8e-40 Score=286.04 Aligned_cols=283 Identities=20% Similarity=0.243 Sum_probs=209.6
Q ss_pred HHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--
Q psy4493 16 KSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-- 93 (323)
Q Consensus 16 ~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-- 93 (323)
...+|+..+.|.|...|+..+.|+|++..+.||+|||+.+..-+...+-+ . |-+. .-..|||++||..
T Consensus 196 ~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlY-r--Pk~~-------~~TRVLVL~PTRELa 265 (691)
T KOG0338|consen 196 CSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLY-R--PKKV-------AATRVLVLVPTRELA 265 (691)
T ss_pred HHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhc-C--cccC-------cceeEEEEeccHHHH
Confidence 45678999999999999999999999999999999997754322221111 1 1111 1245899999998
Q ss_pred -----------hhhhcCeee-----------eccCCCeeEEEEcccccccchhHHHHHHH--HHhhCCcceEEEeccccc
Q psy4493 94 -----------LLKKKKICL-----------MTESSSLKLLYVSPEKLAKSKSFMTKLQK--MYKAGCLARIAIDEVHCC 149 (323)
Q Consensus 94 -----------~l~~~~i~l-----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~--~~~~~~v~~vVvDEah~~ 149 (323)
.+....+.| ......+||+|+||+++.+ ++++ .+...+|..+|+||||+|
T Consensus 266 iQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlID------HlrNs~sf~ldsiEVLvlDEADRM 339 (691)
T KOG0338|consen 266 IQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLID------HLRNSPSFNLDSIEVLVLDEADRM 339 (691)
T ss_pred HHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHH------HhccCCCccccceeEEEechHHHH
Confidence 111111111 4456789999999999986 6665 467789999999999999
Q ss_pred cccCCCchHHHHhHHHHHhhCC-CCCEEEEeecCChhHHHHHHHHhCCCCcEEEec--CCC-CCCceeEEEecC-CchhH
Q psy4493 150 SSWGHDFRPDYQYLSILKTMFP-DVPILGLTATATTKVMLDVQKMLQIEDCVVIKA--PFN-RPNLFYEVRIKP-AAQKD 224 (323)
Q Consensus 150 ~~~~~~~r~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~--~~~-~~~~~~~~~~~~-~~~~~ 224 (323)
++.| |..++..| ..+.| +.|.++||||++.++.+.+. +.+..|+.+-. +.. .+.+...+.... ....+
T Consensus 340 Leeg--FademnEi---i~lcpk~RQTmLFSATMteeVkdL~s--lSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~d 412 (691)
T KOG0338|consen 340 LEEG--FADEMNEI---IRLCPKNRQTMLFSATMTEEVKDLAS--LSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGD 412 (691)
T ss_pred HHHH--HHHHHHHH---HHhccccccceeehhhhHHHHHHHHH--hhcCCCeEEEeCCccccchhhhHHHheeccccccc
Confidence 9965 88887664 44444 88999999999998755333 33555554433 222 233322222222 22222
Q ss_pred HHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeeecccc
Q psy4493 225 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGID 286 (323)
Q Consensus 225 ~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~~Gid 286 (323)
+-.-+..++. ..-...+|||+.|++.|..+--.|--.|++++.+||.|++.+ ||+++||+|
T Consensus 413 Rea~l~~l~~-rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLD 491 (691)
T KOG0338|consen 413 REAMLASLIT-RTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLD 491 (691)
T ss_pred cHHHHHHHHH-HhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCC
Confidence 3333334444 223578999999999999999999889999999999999998 999999999
Q ss_pred cCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 287 KPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 287 ~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
++.|..||||++|.+...|+||+||++|+|+.|+++
T Consensus 492 I~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsV 527 (691)
T KOG0338|consen 492 IEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSV 527 (691)
T ss_pred ccceeEEEeccCchhHHHHHHHhhhhhhcccCcceE
Confidence 999999999999999999999999999999999986
No 29
>KOG0340|consensus
Probab=100.00 E-value=1.4e-38 Score=267.15 Aligned_cols=263 Identities=17% Similarity=0.165 Sum_probs=197.8
Q ss_pred CCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--------------------------------
Q psy4493 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------------------------- 93 (323)
Q Consensus 46 ~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------------------------------- 93 (323)
..+.|.+.++...++. +|++.|+|+|+.+||.+++|+|++-+|.|||
T Consensus 9 F~~LGl~~Wlve~l~~-l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrEL 87 (442)
T KOG0340|consen 9 FSILGLSPWLVEQLKA-LGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTREL 87 (442)
T ss_pred hhhcCccHHHHHHHHH-hcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHH
Confidence 4678999999999998 9999999999999999999999999999999
Q ss_pred ------hhhhcCee-------e----------eccCCCeeEEEEcccccccchhHHHHHH-HHHhhCCcceEEEeccccc
Q psy4493 94 ------LLKKKKIC-------L----------MTESSSLKLLYVSPEKLAKSKSFMTKLQ-KMYKAGCLARIAIDEVHCC 149 (323)
Q Consensus 94 ------~l~~~~i~-------l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~-~~~~~~~v~~vVvDEah~~ 149 (323)
.+...|-. + ......+|++|+||+++.. ...+.+. ..+.+++++++|+||||.+
T Consensus 88 A~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad--~l~sn~~~~~~~~~rlkflVlDEADrv 165 (442)
T KOG0340|consen 88 ALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLAD--HLSSNLGVCSWIFQRLKFLVLDEADRV 165 (442)
T ss_pred HHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCcccccc--ccccCCccchhhhhceeeEEecchhhh
Confidence 11111111 0 4556789999999999975 1111111 1345679999999999999
Q ss_pred cccCCCchHHHHhHHHHHhhCC-CCCEEEEeecCChhHHHHHHHHhCCC--C--cEEEecCCCC---CCceeEEEecCCc
Q psy4493 150 SSWGHDFRPDYQYLSILKTMFP-DVPILGLTATATTKVMLDVQKMLQIE--D--CVVIKAPFNR---PNLFYEVRIKPAA 221 (323)
Q Consensus 150 ~~~~~~~r~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~--~--~~~~~~~~~~---~~~~~~~~~~~~~ 221 (323)
.+. +|...+ ..+.+..| ..|.++||||+++.+. +..+.+ . +.....-.+. ..++..+...+
T Consensus 166 L~~--~f~d~L---~~i~e~lP~~RQtLlfSATitd~i~----ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~-- 234 (442)
T KOG0340|consen 166 LAG--CFPDIL---EGIEECLPKPRQTLLFSATITDTIK----QLFGCPITKSIAFELEVIDGVSTVETLYQGYILVS-- 234 (442)
T ss_pred hcc--chhhHH---hhhhccCCCccceEEEEeehhhHHH----HhhcCCcccccceEEeccCCCCchhhhhhheeecc--
Confidence 873 465543 33445556 4599999999998763 343332 1 2222221111 11222222222
Q ss_pred hhHHHHHHHHHHHhhc--CCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceee
Q psy4493 222 QKDCLDELADLMSRRF--RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 281 (323)
Q Consensus 222 ~~~~~~~l~~~l~~~~--~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~ 281 (323)
...+-..++..+.+.. .++.++||+|+..+|+.++..|+..++.+..+|+.|++.+ ||++
T Consensus 235 ~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVA 314 (442)
T KOG0340|consen 235 IDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVA 314 (442)
T ss_pred hhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechh
Confidence 2333345666665332 4789999999999999999999999999999999999999 9999
Q ss_pred ecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 282 GLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 282 ~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+||+|+|.|+.|||+|+|.++.+|+||+||++|+|+.|.+|
T Consensus 315 sRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~ai 355 (442)
T KOG0340|consen 315 SRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAI 355 (442)
T ss_pred hcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceE
Confidence 99999999999999999999999999999999999999876
No 30
>KOG0335|consensus
Probab=100.00 E-value=8.9e-38 Score=276.23 Aligned_cols=289 Identities=16% Similarity=0.173 Sum_probs=216.2
Q ss_pred HhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHh-cC--CCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 17 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKS-KF--NLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 17 ~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~-~~--g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
++.+...+.|.|+-+++.+..++++++.++||+|||.+++--+-. .+ +.......... .....++++||.+
T Consensus 90 ~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~------~~P~~lIlapTRe 163 (482)
T KOG0335|consen 90 KRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGG------VYPRALILAPTRE 163 (482)
T ss_pred ccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCC------CCCceEEEeCcHH
Confidence 344678889999999999999999999999999999765432221 11 00000000000 1245899999999
Q ss_pred -------hhhh----cCee-------------eeccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceEEEecccc
Q psy4493 94 -------LLKK----KKIC-------------LMTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARIAIDEVHC 148 (323)
Q Consensus 94 -------~l~~----~~i~-------------l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~vVvDEah~ 148 (323)
...+ .++. +......++|+|+||++|.+ .++. ...+++++++|+||||.
T Consensus 164 L~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d------~~e~g~i~l~~~k~~vLDEADr 237 (482)
T KOG0335|consen 164 LVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKD------LIERGKISLDNCKFLVLDEADR 237 (482)
T ss_pred HhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhh------hhhcceeehhhCcEEEecchHH
Confidence 0000 0111 14556789999999999986 4544 45667899999999999
Q ss_pred ccc-cCCCchHHHHhHHHHHhhC--CCCCEEEEeecCChhHHHHHHHHhCCCCcEEE---ecCCCCCCceeEEEecCCch
Q psy4493 149 CSS-WGHDFRPDYQYLSILKTMF--PDVPILGLTATATTKVMLDVQKMLQIEDCVVI---KAPFNRPNLFYEVRIKPAAQ 222 (323)
Q Consensus 149 ~~~-~~~~~r~~~~~l~~l~~~~--~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 222 (323)
|++ .| |.|++.++-.-.... .+.|.++||||.+.++......++ ..+...+ .......++...+..+. +
T Consensus 238 MlD~mg--F~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl-~~~yi~laV~rvg~~~~ni~q~i~~V~--~ 312 (482)
T KOG0335|consen 238 MLDEMG--FEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFL-KDNYIFLAVGRVGSTSENITQKILFVN--E 312 (482)
T ss_pred hhhhcc--ccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHh-hccceEEEEeeeccccccceeEeeeec--c
Confidence 998 55 999877763332232 267999999999998877444443 3333333 23556677766666555 4
Q ss_pred hHHHHHHHHHHHhhc---CCC-----cEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc-----------------
Q psy4493 223 KDCLDELADLMSRRF---RNQ-----SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------- 277 (323)
Q Consensus 223 ~~~~~~l~~~l~~~~---~~~-----~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~----------------- 277 (323)
.++.+.|++++.+.. ... +++|||.|++.|..++..|...++++..+||..++.+
T Consensus 313 ~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlV 392 (482)
T KOG0335|consen 313 MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLV 392 (482)
T ss_pred hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEE
Confidence 567788888887543 233 8999999999999999999999999999999999998
Q ss_pred -ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 -SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 -T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|++++||+|+|+|++||+||+|.+..+|+||+||+||.|..|++.
T Consensus 393 aT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~at 438 (482)
T KOG0335|consen 393 ATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRAT 438 (482)
T ss_pred EehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeE
Confidence 999999999999999999999999999999999999999999863
No 31
>KOG0346|consensus
Probab=100.00 E-value=2.7e-37 Score=265.91 Aligned_cols=296 Identities=18% Similarity=0.196 Sum_probs=218.0
Q ss_pred CcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHH-HhcCCCCCCCcchHHHHHHHhcCCcE
Q psy4493 7 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVL-KSKFNLTDFRPNQLAAINIALLKKDA 85 (323)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l-~~~~g~~~~~~~Q~~~i~~~~~~~~~ 85 (323)
.++++.+.+. ..||+.+.-.|..+|+.++.|+|++.-+.||+|||....--+ ...+.- .....-.++-..
T Consensus 26 LD~RllkAi~-~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~--------k~t~~~e~~~sa 96 (569)
T KOG0346|consen 26 LDSRLLKAIT-KLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAE--------KKTNDGEQGPSA 96 (569)
T ss_pred CCHHHHHHHH-HhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHh--------hhccccccccee
Confidence 4455444443 468999999999999999999999999999999997654333 111100 000011134568
Q ss_pred EEEccchh------------------hhhhcCee--e------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcc
Q psy4493 86 IIIMPTGK------------------LLKKKKIC--L------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLA 139 (323)
Q Consensus 86 lv~~pTgs------------------~l~~~~i~--l------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~ 139 (323)
++++||.. .++..++. . ....+.++|+|+||.+++.+ + ..........+.
T Consensus 97 ~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~--~--~~~~~~~~~~l~ 172 (569)
T KOG0346|consen 97 VILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRH--L--AAGVLEYLDSLS 172 (569)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHH--H--hhccchhhhhee
Confidence 99999999 11111111 0 23356789999999999862 1 111124456899
Q ss_pred eEEEeccccccccCCCchHHHHhHHHHHhhCC-CCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCC--CCCCceeEEE
Q psy4493 140 RIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP-DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPF--NRPNLFYEVR 216 (323)
Q Consensus 140 ~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~--~~~~~~~~~~ 216 (323)
++|+||||.++..| |...+.. +...+| ..|-++||||++.++.. .+.+-+.+|.++.... ..+..++...
T Consensus 173 ~LVvDEADLllsfG--Yeedlk~---l~~~LPr~~Q~~LmSATl~dDv~~--LKkL~l~nPviLkl~e~el~~~dqL~Qy 245 (569)
T KOG0346|consen 173 FLVVDEADLLLSFG--YEEDLKK---LRSHLPRIYQCFLMSATLSDDVQA--LKKLFLHNPVILKLTEGELPNPDQLTQY 245 (569)
T ss_pred eEEechhhhhhhcc--cHHHHHH---HHHhCCchhhheeehhhhhhHHHH--HHHHhccCCeEEEeccccCCCcccceEE
Confidence 99999999999966 7777655 444444 77999999999987744 4455578887766432 2222222223
Q ss_pred ecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc-------------------
Q psy4493 217 IKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------- 277 (323)
Q Consensus 217 ~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------- 277 (323)
...++.++++-.++.+++-..-.++.|||+||.+.|..+...|...|++.++++|.|+...
T Consensus 246 ~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAt 325 (569)
T KOG0346|consen 246 QVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIAT 325 (569)
T ss_pred EEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEc
Confidence 3334467889999998887667799999999999999999999999999999999998877
Q ss_pred ----------------------------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 ----------------------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 ----------------------------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
-...+||||+.+|.+|+|||+|.+...|+||+||++|+++.|.++
T Consensus 326 D~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gtal 404 (569)
T KOG0346|consen 326 DDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTAL 404 (569)
T ss_pred cCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceE
Confidence 345789999999999999999999999999999999999999764
No 32
>KOG0326|consensus
Probab=100.00 E-value=6.3e-38 Score=259.92 Aligned_cols=277 Identities=22% Similarity=0.226 Sum_probs=207.3
Q ss_pred HHHHHhc--CCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCC---cEEE
Q psy4493 13 SVLKSKF--NLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKK---DAII 87 (323)
Q Consensus 13 ~~l~~~~--~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~---~~lv 87 (323)
++|...| ||+.+.|.|.+.+..++.|+|++.-+..|.|||.+.+--+ ++.+-..+ ..++
T Consensus 95 ~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~----------------Lekid~~~~~IQ~~i 158 (459)
T KOG0326|consen 95 ELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPV----------------LEKIDPKKNVIQAII 158 (459)
T ss_pred HHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechh----------------hhhcCccccceeEEE
Confidence 3444433 7899999999999999999999999999999997633221 11222222 2688
Q ss_pred Eccchh----------hhh-hcCeee-------------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceEE
Q psy4493 88 IMPTGK----------LLK-KKKICL-------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARIA 142 (323)
Q Consensus 88 ~~pTgs----------~l~-~~~i~l-------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~vV 142 (323)
++||+. .+. ..|+.. .......+++|+||+++++ +.++ ...+++..++|
T Consensus 159 lVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlD------L~~KgVa~ls~c~~lV 232 (459)
T KOG0326|consen 159 LVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILD------LAKKGVADLSDCVILV 232 (459)
T ss_pred EeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHH------HHhcccccchhceEEE
Confidence 999988 111 233331 3446778999999999986 4444 34556778999
Q ss_pred EeccccccccCCCchHHHHhHHHHHhhCC-CCCEEEEeecCChhHHHHHHHHhCCCCcEEEec--CCCCCCc-eeEEEec
Q psy4493 143 IDEVHCCSSWGHDFRPDYQYLSILKTMFP-DVPILGLTATATTKVMLDVQKMLQIEDCVVIKA--PFNRPNL-FYEVRIK 218 (323)
Q Consensus 143 vDEah~~~~~~~~~r~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~--~~~~~~~-~~~~~~~ 218 (323)
+||||.+++ .+|.+.+.. +...+| +.|++++|||.|-.+.+.+.+.+. +|..+.. ......+ +|+..-.
T Consensus 233 ~DEADKlLs--~~F~~~~e~---li~~lP~~rQillySATFP~tVk~Fm~~~l~--kPy~INLM~eLtl~GvtQyYafV~ 305 (459)
T KOG0326|consen 233 MDEADKLLS--VDFQPIVEK---LISFLPKERQILLYSATFPLTVKGFMDRHLK--KPYEINLMEELTLKGVTQYYAFVE 305 (459)
T ss_pred echhhhhhc--hhhhhHHHH---HHHhCCccceeeEEecccchhHHHHHHHhcc--Ccceeehhhhhhhcchhhheeeec
Confidence 999999998 458776555 555555 889999999999988777777754 4444432 2222222 2222222
Q ss_pred CCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------cee
Q psy4493 219 PAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280 (323)
Q Consensus 219 ~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~ 280 (323)
+ .+|+..|..++. +..-.+.||||||.+.++.+|..+.+.|++|.++|+.|.+++ ||.
T Consensus 306 e---~qKvhCLntLfs-kLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL 381 (459)
T KOG0326|consen 306 E---RQKVHCLNTLFS-KLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDL 381 (459)
T ss_pred h---hhhhhhHHHHHH-HhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhh
Confidence 2 334444444444 235578999999999999999999999999999999999998 999
Q ss_pred eecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 281 FGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 281 ~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+.||||++.|+.|||||+|++.++|+||+||+||.|..|.+|
T Consensus 382 ~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAI 423 (459)
T KOG0326|consen 382 FTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAI 423 (459)
T ss_pred hhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEE
Confidence 999999999999999999999999999999999999999775
No 33
>KOG0336|consensus
Probab=100.00 E-value=1.8e-37 Score=264.97 Aligned_cols=284 Identities=16% Similarity=0.200 Sum_probs=217.3
Q ss_pred cCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhh-
Q psy4493 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLK- 96 (323)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~- 96 (323)
.|+..+.|.|.++-+.+++|.|++.++-||.|||-. -+++. |..-...|.+.+ -..+..+++.+||.. +++
T Consensus 238 ~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~--~L~pg-~ihi~aqp~~~~----qr~~p~~lvl~ptreLalqi 310 (629)
T KOG0336|consen 238 TGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLA--FLLPG-FIHIDAQPKRRE----QRNGPGVLVLTPTRELALQI 310 (629)
T ss_pred ccCCCCCcchhcccceeecCcceEEEEecCCCcCHH--Hhccc-eeeeeccchhhh----ccCCCceEEEeccHHHHHHH
Confidence 478999999999999999999999999999999933 22222 222222223322 123456999999998 111
Q ss_pred --------hcCee---e----------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCC
Q psy4493 97 --------KKKIC---L----------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHD 155 (323)
Q Consensus 97 --------~~~i~---l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~ 155 (323)
-.|.. + .......+++|+||++|.+ .+ ......+..+.++|+||||.|++.|
T Consensus 311 e~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlnd--L~---~~n~i~l~siTYlVlDEADrMLDMg-- 383 (629)
T KOG0336|consen 311 EGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLND--LQ---MDNVINLASITYLVLDEADRMLDMG-- 383 (629)
T ss_pred HhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhh--hh---hcCeeeeeeeEEEEecchhhhhccc--
Confidence 11111 1 4456678999999999975 22 2224556789999999999999976
Q ss_pred chHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEE-EecCCCCCC---ceeEEEecCCchhHHHHHHHH
Q psy4493 156 FRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVV-IKAPFNRPN---LFYEVRIKPAAQKDCLDELAD 231 (323)
Q Consensus 156 ~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~ 231 (323)
|.+++..+ +....|+.|+++.|||.|+.+++...+++ .++.+ +..+.+... +...+ .. ....++++.+..
T Consensus 384 FEpqIrki--lldiRPDRqtvmTSATWP~~VrrLa~sY~--Kep~~v~vGsLdL~a~~sVkQ~i-~v-~~d~~k~~~~~~ 457 (629)
T KOG0336|consen 384 FEPQIRKI--LLDIRPDRQTVMTSATWPEGVRRLAQSYL--KEPMIVYVGSLDLVAVKSVKQNI-IV-TTDSEKLEIVQF 457 (629)
T ss_pred ccHHHHHH--hhhcCCcceeeeecccCchHHHHHHHHhh--hCceEEEecccceeeeeeeeeeE-Ee-cccHHHHHHHHH
Confidence 99998776 77777899999999999998877666664 44443 333433222 11111 12 334667888888
Q ss_pred HHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeeecccccCCccEE
Q psy4493 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFV 293 (323)
Q Consensus 232 ~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~V 293 (323)
++..+..+.|+||||.++..|..+...|.-.|+....+||+-++.+ ||+++||+|+||+.+|
T Consensus 458 f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV 537 (629)
T KOG0336|consen 458 FVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHV 537 (629)
T ss_pred HHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhccee
Confidence 8887778899999999999999999999999999999999988877 9999999999999999
Q ss_pred EEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 294 IHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 294 i~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+|||+|.+..+|+||+||+||+|+.|.++
T Consensus 538 ~NyDFP~nIeeYVHRvGrtGRaGr~G~si 566 (629)
T KOG0336|consen 538 YNYDFPRNIEEYVHRVGRTGRAGRTGTSI 566 (629)
T ss_pred eccCCCccHHHHHHHhcccccCCCCcceE
Confidence 99999999999999999999999999886
No 34
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.8e-35 Score=287.84 Aligned_cols=285 Identities=16% Similarity=0.186 Sum_probs=201.2
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHH-HhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCC
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINI-ALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKK 83 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~-~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~ 83 (323)
++.++.+.+.+++ .|+..++|+|.++++. +..++++++.+|||+|||.....++. ..+..++
T Consensus 6 l~lp~~~~~~l~~-~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail----------------~~l~~~~ 68 (737)
T PRK02362 6 LPLPEGVIEFYEA-EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAML----------------KAIARGG 68 (737)
T ss_pred cCCCHHHHHHHHh-CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHH----------------HHHhcCC
Confidence 5567778888876 6899999999999987 67899999999999999976544432 2334677
Q ss_pred cEEEEccchh-------hhhh---cCeee----------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceEE
Q psy4493 84 DAIIIMPTGK-------LLKK---KKICL----------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARIA 142 (323)
Q Consensus 84 ~~lv~~pTgs-------~l~~---~~i~l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~vV 142 (323)
.+++++||.+ .+.. .|+.+ .......+|+|+||+++.. +++. ....++++++|
T Consensus 69 kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~------llr~~~~~l~~v~lvV 142 (737)
T PRK02362 69 KALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDS------LLRNGAPWLDDITCVV 142 (737)
T ss_pred cEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHH------HHhcChhhhhhcCEEE
Confidence 8999999999 2222 25552 1112467999999999853 3332 23346899999
Q ss_pred EeccccccccCCCchHHHHh-HHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEE-----
Q psy4493 143 IDEVHCCSSWGHDFRPDYQY-LSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVR----- 216 (323)
Q Consensus 143 vDEah~~~~~~~~~r~~~~~-l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~----- 216 (323)
+||+|++.+.+ +.+.+.. +..++...++.|++++|||+++ .+++.+|++... +.....+..+...+.
T Consensus 143 iDE~H~l~d~~--rg~~le~il~rl~~~~~~~qii~lSATl~n--~~~la~wl~~~~---~~~~~rpv~l~~~v~~~~~~ 215 (737)
T PRK02362 143 VDEVHLIDSAN--RGPTLEVTLAKLRRLNPDLQVVALSATIGN--ADELADWLDAEL---VDSEWRPIDLREGVFYGGAI 215 (737)
T ss_pred EECccccCCCc--chHHHHHHHHHHHhcCCCCcEEEEcccCCC--HHHHHHHhCCCc---ccCCCCCCCCeeeEecCCee
Confidence 99999998633 4444433 3455555568999999999987 456788876431 111111111110000
Q ss_pred -------ecC-CchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCC-------------------------
Q psy4493 217 -------IKP-AAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRG------------------------- 263 (323)
Q Consensus 217 -------~~~-~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~------------------------- 263 (323)
... .........+.+.+. .++++||||+|++.|+.++..|....
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 292 (737)
T PRK02362 216 HFDDSQREVEVPSKDDTLNLVLDTLE---EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDT 292 (737)
T ss_pred ccccccccCCCccchHHHHHHHHHHH---cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCc
Confidence 000 011233344444443 67899999999999999988886431
Q ss_pred -----------CeEEeecCCCCCCc------------------ceeeecccccCCccEEEE----cc-----CCCCHhHH
Q psy4493 264 -----------LRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIH----HC-----LSKSMENF 305 (323)
Q Consensus 264 -----------~~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~----~~-----~p~~~~~~ 305 (323)
..++++|++|++.+ |+++++|+|+|++++||+ || .|.+..+|
T Consensus 293 ~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y 372 (737)
T PRK02362 293 ETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEY 372 (737)
T ss_pred cccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHH
Confidence 25899999999998 999999999999999997 65 58899999
Q ss_pred HHHhccCCCCCCC--CCCC
Q psy4493 306 YQVSIAFGLGKHS--FRSR 322 (323)
Q Consensus 306 ~qr~GR~gR~g~~--g~~~ 322 (323)
+||+|||||.|.+ |.|+
T Consensus 373 ~Qm~GRAGR~g~d~~G~~i 391 (737)
T PRK02362 373 HQMAGRAGRPGLDPYGEAV 391 (737)
T ss_pred HHHhhcCCCCCCCCCceEE
Confidence 9999999999976 5543
No 35
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.5e-35 Score=278.86 Aligned_cols=291 Identities=20% Similarity=0.220 Sum_probs=216.2
Q ss_pred cHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHH----hcCC
Q psy4493 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIA----LLKK 83 (323)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~----~~~~ 83 (323)
.+.+++.++.. +..+++.|..+++.+.+|+++++++|||+|||+.....+-+. .+..- ..+=
T Consensus 9 ~~~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~------------l~~~~~~~~~~~i 74 (814)
T COG1201 9 DPRVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINE------------LLSLGKGKLEDGI 74 (814)
T ss_pred CHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHH------------HHhccCCCCCCce
Confidence 45677778777 999999999999999999999999999999998755444331 11100 0112
Q ss_pred cEEEEccchh-----------hhhhcCeee-------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcc
Q psy4493 84 DAIIIMPTGK-----------LLKKKKICL-------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLA 139 (323)
Q Consensus 84 ~~lv~~pTgs-----------~l~~~~i~l-------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~ 139 (323)
.++.+.|-.+ -+...|+.+ ......+||+|+|||+|.- .+.. -+-...+.+|+
T Consensus 75 ~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~l--ll~~-~~~r~~l~~vr 151 (814)
T COG1201 75 YALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAI--LLNS-PKFRELLRDVR 151 (814)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHH--HhcC-HHHHHHhcCCc
Confidence 4799999998 344555553 4556789999999999853 1100 01123446899
Q ss_pred eEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCC--CcEEEecCCCCCCceeEEEe
Q psy4493 140 RIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIE--DCVVIKAPFNRPNLFYEVRI 217 (323)
Q Consensus 140 ~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~~~~~~~~ 217 (323)
+|||||.|.+....++..-. ..|..++..-++.|.|++|||..+ ...+.++|... .+.++..+..++...-.+.+
T Consensus 152 ~VIVDEiHel~~sKRG~~Ls-l~LeRL~~l~~~~qRIGLSATV~~--~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p 228 (814)
T COG1201 152 YVIVDEIHALAESKRGVQLA-LSLERLRELAGDFQRIGLSATVGP--PEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISP 228 (814)
T ss_pred EEEeehhhhhhccccchhhh-hhHHHHHhhCcccEEEeehhccCC--HHHHHHHhcCCCCceEEEEcccCCcceEEEEec
Confidence 99999999998644333332 345667766668999999999997 45778888776 45666665554433222222
Q ss_pred cCC------chhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCC-CeEEeecCCCCCCc-------------
Q psy4493 218 KPA------AQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRG-LRVSAYHAKLESNV------------- 277 (323)
Q Consensus 218 ~~~------~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~-~~v~~~h~~~~~~~------------- 277 (323)
... .....+..+.+++++ ...+|||+||+..++.++..|++.+ ..+..+||.++.++
T Consensus 229 ~~~~~~~~~~~~~~~~~i~~~v~~---~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~l 305 (814)
T COG1201 229 VEDLIYDEELWAALYERIAELVKK---HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGEL 305 (814)
T ss_pred CCccccccchhHHHHHHHHHHHhh---cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCc
Confidence 222 224466777777774 3599999999999999999999886 78999999999998
Q ss_pred -----ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCC-CCCCCC
Q psy4493 278 -----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLG-KHSFRS 321 (323)
Q Consensus 278 -----T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~-g~~g~~ 321 (323)
|++++.|||+.+++.||+++.|+++..++||+||+|+. |..++.
T Consensus 306 ravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg 355 (814)
T COG1201 306 KAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKG 355 (814)
T ss_pred eEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccE
Confidence 99999999999999999999999999999999999955 554554
No 36
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=3.6e-35 Score=288.50 Aligned_cols=284 Identities=23% Similarity=0.253 Sum_probs=188.5
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHH-HHhcCCcEEE
Q psy4493 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAIN-IALLKKDAII 87 (323)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~-~~~~~~~~lv 87 (323)
+.+.+.+++. +..++|.|.++++.+++++++++.+|||+|||......+.+.+- ...-. ....+..+++
T Consensus 20 ~~v~~~~~~~--~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~--------~~~~~~~~~~~~~~Ly 89 (876)
T PRK13767 20 PYVREWFKEK--FGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELF--------RLGREGELEDKVYCLY 89 (876)
T ss_pred HHHHHHHHHc--cCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHH--------hhccccCCCCCeEEEE
Confidence 3455666664 56799999999999999999999999999999875544322100 00000 0011234899
Q ss_pred Eccchhh-------hh---------------hc-Ceee-------------eccCCCeeEEEEcccccccchhHHHHHHH
Q psy4493 88 IMPTGKL-------LK---------------KK-KICL-------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK 131 (323)
Q Consensus 88 ~~pTgs~-------l~---------------~~-~i~l-------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~ 131 (323)
++||.+. +. .. ++.. ......++|+|+||+++.. .+..
T Consensus 90 IsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~------ll~~ 163 (876)
T PRK13767 90 VSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAI------LLNS 163 (876)
T ss_pred EcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHH------HhcC
Confidence 9999981 10 01 2221 1123467999999999853 2211
Q ss_pred ---HHhhCCcceEEEeccccccccCCCchHHH-HhHHHHHhhC-CCCCEEEEeecCChhHHHHHHHHhCCC-------Cc
Q psy4493 132 ---MYKAGCLARIAIDEVHCCSSWGHDFRPDY-QYLSILKTMF-PDVPILGLTATATTKVMLDVQKMLQIE-------DC 199 (323)
Q Consensus 132 ---~~~~~~v~~vVvDEah~~~~~~~~~r~~~-~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~-------~~ 199 (323)
...+.++++|||||||.+.+... ...+ ..+..+.... ++.|++++|||+++ .+.+.++++.. +.
T Consensus 164 ~~~~~~l~~l~~VVIDE~H~l~~~~R--G~~l~~~L~rL~~l~~~~~q~IglSATl~~--~~~va~~L~~~~~~~~~r~~ 239 (876)
T PRK13767 164 PKFREKLRTVKWVIVDEIHSLAENKR--GVHLSLSLERLEELAGGEFVRIGLSATIEP--LEEVAKFLVGYEDDGEPRDC 239 (876)
T ss_pred hhHHHHHhcCCEEEEechhhhccCcc--HHHHHHHHHHHHHhcCCCCeEEEEecccCC--HHHHHHHhcCccccCCCCce
Confidence 11346899999999999986321 1111 1233444444 47899999999987 34556666432 12
Q ss_pred EEEecCCCCCCceeEEE-ecC----Cc----hhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhC------CC
Q psy4493 200 VVIKAPFNRPNLFYEVR-IKP----AA----QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR------GL 264 (323)
Q Consensus 200 ~~~~~~~~~~~~~~~~~-~~~----~~----~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~------~~ 264 (323)
.++.....++ ....+. +.. .. .......+.+.+. .++++||||||++.|+.++..|++. +.
T Consensus 240 ~iv~~~~~k~-~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~---~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~ 315 (876)
T PRK13767 240 EIVDARFVKP-FDIKVISPVDDLIHTPAEEISEALYETLHELIK---EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDED 315 (876)
T ss_pred EEEccCCCcc-ceEEEeccCccccccccchhHHHHHHHHHHHHh---cCCCEEEEeCCHHHHHHHHHHHHHhchhhcccc
Confidence 3333222221 111111 100 01 1223334444444 4679999999999999999999873 46
Q ss_pred eEEeecCCCCCCc------------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCC
Q psy4493 265 RVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGK 316 (323)
Q Consensus 265 ~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g 316 (323)
.+..+||+++.++ |+++++|||+|++++||++|.|.+..+|+||+||+||.+
T Consensus 316 ~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~ 385 (876)
T PRK13767 316 NIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRL 385 (876)
T ss_pred ceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCC
Confidence 7999999999987 999999999999999999999999999999999999874
No 37
>KOG0332|consensus
Probab=100.00 E-value=1.2e-35 Score=250.95 Aligned_cols=292 Identities=16% Similarity=0.169 Sum_probs=218.3
Q ss_pred cHHHHHHHHHhcCCCCCChhHHHHHHHHhcC--CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcE
Q psy4493 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLK--KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDA 85 (323)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~--~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~ 85 (323)
.+++.+.+-. .++..+...|..+++..+.. ++++..+..|.|||+++...+.....- -..-.++
T Consensus 98 kPellkgly~-M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~-------------~~~~PQ~ 163 (477)
T KOG0332|consen 98 KPELLKGLYA-MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP-------------DVVVPQC 163 (477)
T ss_pred CHHHHhHHHH-hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc-------------cccCCCc
Confidence 4455566655 78899999999999999875 457777799999999877666432111 1123457
Q ss_pred EEEccchh-------hhhhcCee--e------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEe
Q psy4493 86 IIIMPTGK-------LLKKKKIC--L------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAID 144 (323)
Q Consensus 86 lv~~pTgs-------~l~~~~i~--l------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvD 144 (323)
+.++||.. .+.+.|-. + ....-..+|+|+||+.+++ |...+ .......++.+|+|
T Consensus 164 iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~D---lm~kl-k~id~~kikvfVlD 239 (477)
T KOG0332|consen 164 ICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLD---LMLKL-KCIDLEKIKVFVLD 239 (477)
T ss_pred eeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHH---HHHHH-HhhChhhceEEEec
Confidence 78899998 33333332 1 1122346899999999985 22222 23455689999999
Q ss_pred ccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEec-CCCCCCceeEEEecCCchh
Q psy4493 145 EVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKA-PFNRPNLFYEVRIKPAAQK 223 (323)
Q Consensus 145 Eah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 223 (323)
||+.+.+. ++|+..-..+ .+...++.|++++|||..........+.+.-.++..+.. .....++...+..+.. ..
T Consensus 240 EAD~Mi~t-qG~~D~S~rI--~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~-~~ 315 (477)
T KOG0332|consen 240 EADVMIDT-QGFQDQSIRI--MRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCAC-RD 315 (477)
T ss_pred chhhhhhc-ccccccchhh--hhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccc-hh
Confidence 99999864 3577655443 333334899999999999998888888866666666654 3445666444444443 35
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeeeccc
Q psy4493 224 DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGI 285 (323)
Q Consensus 224 ~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~~Gi 285 (323)
+|++.|.++.. ...-++.||||.|++.|.+++..|...|..|..+||+|+.++ |++++||+
T Consensus 316 ~K~~~l~~lyg-~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGi 394 (477)
T KOG0332|consen 316 DKYQALVNLYG-LLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGI 394 (477)
T ss_pred hHHHHHHHHHh-hhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhccc
Confidence 67777777554 346689999999999999999999999999999999999988 99999999
Q ss_pred ccCCccEEEEccCCC------CHhHHHHHhccCCCCCCCCCCC
Q psy4493 286 DKPNVRFVIHHCLSK------SMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 286 d~~~v~~Vi~~~~p~------~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|++.|+.|||||+|. +...|+||+||+||.|+.|-++
T Consensus 395 Dv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~ 437 (477)
T KOG0332|consen 395 DVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAI 437 (477)
T ss_pred ccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEE
Confidence 999999999999995 7889999999999999999764
No 38
>KOG0348|consensus
Probab=100.00 E-value=1.3e-35 Score=261.04 Aligned_cols=293 Identities=20% Similarity=0.153 Sum_probs=207.6
Q ss_pred cHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcC-CCCCCCcchHHHHHHHhcCCcEE
Q psy4493 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKF-NLTDFRPNQLAAINIALLKKDAI 86 (323)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~-g~~~~~~~Q~~~i~~~~~~~~~l 86 (323)
...+.+.|....++..+...|.++|+.++.++|+++.++||+|||-..+.-+-..+ +. ...+|. -.|--.+
T Consensus 144 ~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m--~~ki~R------s~G~~AL 215 (708)
T KOG0348|consen 144 HPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAM--EPKIQR------SDGPYAL 215 (708)
T ss_pred CHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhc--Cccccc------cCCceEE
Confidence 44578899999999999999999999999999999999999999955433221100 00 000110 0233479
Q ss_pred EEccchh-------hhhhcCee---e---------------eccCCCeeEEEEcccccccchhHHHHHHH--HHhhCCcc
Q psy4493 87 IIMPTGK-------LLKKKKIC---L---------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK--MYKAGCLA 139 (323)
Q Consensus 87 v~~pTgs-------~l~~~~i~---l---------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~--~~~~~~v~ 139 (323)
|++||.. .++++--+ | ...+..+.|+|+||++|++ ++++ .+...+++
T Consensus 216 VivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvD------HLknT~~i~~s~LR 289 (708)
T KOG0348|consen 216 VIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVD------HLKNTKSIKFSRLR 289 (708)
T ss_pred EEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHH------HHhccchheeeeee
Confidence 9999999 22222111 1 2335678999999999987 6665 35667899
Q ss_pred eEEEeccccccccCCCchHHHHhHHHHHhh-------C---C-CCCEEEEeecCChhHHHHHHHHhCCCCcEEEec----
Q psy4493 140 RIAIDEVHCCSSWGHDFRPDYQYLSILKTM-------F---P-DVPILGLTATATTKVMLDVQKMLQIEDCVVIKA---- 204 (323)
Q Consensus 140 ~vVvDEah~~~~~~~~~r~~~~~l~~l~~~-------~---~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~---- 204 (323)
++|+||+|++++.| |...+..|-.+... . | ..|-+++|||++..+.+ ..-+.+.++..+..
T Consensus 290 wlVlDEaDrlleLG--fekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~r--La~~sLkDpv~I~ld~s~ 365 (708)
T KOG0348|consen 290 WLVLDEADRLLELG--FEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNR--LADLSLKDPVYISLDKSH 365 (708)
T ss_pred EEEecchhHHHhcc--chhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHH--HhhccccCceeeeccchh
Confidence 99999999999976 88777665433321 1 1 35689999999987643 33345677777761
Q ss_pred -CCC----------CC-------------Cc--eeEEEecCCchhHHHHHHHHHHHh---hcCCCcEEEEeCChhHHHHH
Q psy4493 205 -PFN----------RP-------------NL--FYEVRIKPAAQKDCLDELADLMSR---RFRNQSGIIYTTSIKECEDL 255 (323)
Q Consensus 205 -~~~----------~~-------------~~--~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~iVF~~s~~~~~~l 255 (323)
..+ .+ ++ +|.+.+. +-++-.|..+|.+ .....++|||.++.+.++.=
T Consensus 366 ~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPp----KLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFH 441 (708)
T KOG0348|consen 366 SQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPP----KLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFH 441 (708)
T ss_pred hhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCC----chhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHH
Confidence 111 00 00 1111111 1122233333332 23567999999999999888
Q ss_pred HHHHHhC----------------------CCeEEeecCCCCCCc------------------ceeeecccccCCccEEEE
Q psy4493 256 REELRNR----------------------GLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIH 295 (323)
Q Consensus 256 ~~~L~~~----------------------~~~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~ 295 (323)
++.|... +.++.-+||+|++++ ||+++||+|+|+|++||+
T Consensus 442 y~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ 521 (708)
T KOG0348|consen 442 YSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ 521 (708)
T ss_pred HHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE
Confidence 8777642 446888999999998 999999999999999999
Q ss_pred ccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 296 HCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 296 ~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
||+|.+..+|+||+||++|.|..|.++
T Consensus 522 Yd~P~s~adylHRvGRTARaG~kG~al 548 (708)
T KOG0348|consen 522 YDPPFSTADYLHRVGRTARAGEKGEAL 548 (708)
T ss_pred eCCCCCHHHHHHHhhhhhhccCCCceE
Confidence 999999999999999999999999875
No 39
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1e-33 Score=276.07 Aligned_cols=275 Identities=20% Similarity=0.220 Sum_probs=201.4
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcC------CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHH
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK------KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINI 78 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~------~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~ 78 (323)
||-+.+..+.+.+.++++ +++.|.++++.+..+ .|.++.+|||+|||..+..++ +.+
T Consensus 434 ~~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~----------------l~a 496 (926)
T TIGR00580 434 FPPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAA----------------FKA 496 (926)
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHH----------------HHH
Confidence 333455677888888885 799999999999864 689999999999997754443 334
Q ss_pred HhcCCcEEEEccchh-----------hhhhcCee---e--------------eccCCCeeEEEEcccccccchhHHHHHH
Q psy4493 79 ALLKKDAIIIMPTGK-----------LLKKKKIC---L--------------MTESSSLKLLYVSPEKLAKSKSFMTKLQ 130 (323)
Q Consensus 79 ~~~~~~~lv~~pTgs-----------~l~~~~i~---l--------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~ 130 (323)
+.+++.+++++||.. .+...++. + ....+.++|+|+||..+..
T Consensus 497 l~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~--------- 567 (926)
T TIGR00580 497 VLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQK--------- 567 (926)
T ss_pred HHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhC---------
Confidence 457788999999999 22223443 1 1123568999999954421
Q ss_pred HHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecC-CCCC
Q psy4493 131 KMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAP-FNRP 209 (323)
Q Consensus 131 ~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~~~ 209 (323)
...+.+++++||||+|++.. .. ...+....++.++++||||+.+.... ....+..++..+..+ ..+.
T Consensus 568 -~v~f~~L~llVIDEahrfgv---~~------~~~L~~~~~~~~vL~~SATpiprtl~--~~l~g~~d~s~I~~~p~~R~ 635 (926)
T TIGR00580 568 -DVKFKDLGLLIIDEEQRFGV---KQ------KEKLKELRTSVDVLTLSATPIPRTLH--MSMSGIRDLSIIATPPEDRL 635 (926)
T ss_pred -CCCcccCCEEEeecccccch---hH------HHHHHhcCCCCCEEEEecCCCHHHHH--HHHhcCCCcEEEecCCCCcc
Confidence 12345899999999998632 11 22344455688999999999886543 344566666666653 3344
Q ss_pred CceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhC--CCeEEeecCCCCCCc----------
Q psy4493 210 NLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR--GLRVSAYHAKLESNV---------- 277 (323)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~--~~~v~~~h~~~~~~~---------- 277 (323)
++...+.... .......+...+. ++++++||||++++++.+++.|++. ++++..+||+|++.+
T Consensus 636 ~V~t~v~~~~--~~~i~~~i~~el~---~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~ 710 (926)
T TIGR00580 636 PVRTFVMEYD--PELVREAIRRELL---RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK 710 (926)
T ss_pred ceEEEEEecC--HHHHHHHHHHHHH---cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc
Confidence 4544433221 1222233333333 6789999999999999999999984 789999999999887
Q ss_pred --------ceeeecccccCCccEEEEccCCC-CHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 --------SIAFGLGIDKPNVRFVIHHCLSK-SMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 --------T~~~~~Gid~~~v~~Vi~~~~p~-~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++++|+|+|++++||+++.|. +..+|.||+||+||.|+.|.|+
T Consensus 711 Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~ai 764 (926)
T TIGR00580 711 GEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAY 764 (926)
T ss_pred CCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEE
Confidence 99999999999999999999865 6789999999999999999986
No 40
>KOG0341|consensus
Probab=100.00 E-value=1.5e-35 Score=251.65 Aligned_cols=290 Identities=18% Similarity=0.191 Sum_probs=215.6
Q ss_pred cHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHH-HHHHHh-cCCcE
Q psy4493 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLA-AINIAL-LKKDA 85 (323)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~-~i~~~~-~~~~~ 85 (323)
+.-+...|++ .|+..+.|.|.+.++.+++|+|.+-++.||+|||-.+..-+-- | ..|++ .+|... +|.-.
T Consensus 178 P~~~L~~lk~-KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~im-f------~LeqE~~lPf~~~EGP~g 249 (610)
T KOG0341|consen 178 PKPLLRGLKK-KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIM-F------ALEQEMMLPFARGEGPYG 249 (610)
T ss_pred CHHHHHHHHh-cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHH-H------HHHHHhcCccccCCCCee
Confidence 3446777877 7999999999999999999999999999999999432211100 0 01222 222221 24457
Q ss_pred EEEccchh--------------hhhhcCee-e---------------eccCCCeeEEEEcccccccchhHHHHHHH-HHh
Q psy4493 86 IIIMPTGK--------------LLKKKKIC-L---------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYK 134 (323)
Q Consensus 86 lv~~pTgs--------------~l~~~~i~-l---------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~ 134 (323)
+++.|... .|.+.|.+ + .......+|+|+||++|.+ .+.+ ...
T Consensus 250 LiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~D------mL~KK~~s 323 (610)
T KOG0341|consen 250 LIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMD------MLAKKIMS 323 (610)
T ss_pred EEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHH------HHHHhhcc
Confidence 99999988 44444444 1 3445678999999999975 3333 344
Q ss_pred hCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCC-CCCc--
Q psy4493 135 AGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFN-RPNL-- 211 (323)
Q Consensus 135 ~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~-- 211 (323)
+.--+++++||||++.+.| |..++..+ +.......|.++||||.|..++....+.| -.|..++.... ..++
T Consensus 324 Ld~CRyL~lDEADRmiDmG--FEddir~i--F~~FK~QRQTLLFSATMP~KIQ~FAkSAL--VKPvtvNVGRAGAAsldV 397 (610)
T KOG0341|consen 324 LDACRYLTLDEADRMIDMG--FEDDIRTI--FSFFKGQRQTLLFSATMPKKIQNFAKSAL--VKPVTVNVGRAGAASLDV 397 (610)
T ss_pred HHHHHHhhhhhHHHHhhcc--chhhHHHH--HHHHhhhhheeeeeccccHHHHHHHHhhc--ccceEEecccccccchhH
Confidence 4556789999999999976 88876664 32233478999999999998876655554 33444443221 1111
Q ss_pred eeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc--------------
Q psy4493 212 FYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------------- 277 (323)
Q Consensus 212 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~-------------- 277 (323)
...+.. ...+.|+-.|++.+.+ ...|+||||..+..+..+.++|--.|+.+..+||+-++++
T Consensus 398 iQevEy--VkqEaKiVylLeCLQK--T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKD 473 (610)
T KOG0341|consen 398 IQEVEY--VKQEAKIVYLLECLQK--TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKD 473 (610)
T ss_pred HHHHHH--HHhhhhhhhHHHHhcc--CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCc
Confidence 101111 1135677778888876 7789999999999999999999999999999999999998
Q ss_pred ----ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCC
Q psy4493 278 ----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRS 321 (323)
Q Consensus 278 ----T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~ 321 (323)
||+++.|+|||++.+|||||+|.....|+||+||+||.|+.|-+
T Consensus 474 VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiA 521 (610)
T KOG0341|consen 474 VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIA 521 (610)
T ss_pred eEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCccee
Confidence 99999999999999999999999999999999999999999854
No 41
>KOG0327|consensus
Probab=100.00 E-value=1.5e-34 Score=245.83 Aligned_cols=267 Identities=19% Similarity=0.259 Sum_probs=212.9
Q ss_pred cCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh---------hhhhcCe-------
Q psy4493 37 LKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK---------LLKKKKI------- 100 (323)
Q Consensus 37 ~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs---------~l~~~~i------- 100 (323)
++.+-++-....+|+.+.++..+.. +||++|+.+|+.||....+|.|+.+.+++|+ .+.....
T Consensus 19 sn~~evvdsfddm~L~e~LLrgiy~-yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qa 97 (397)
T KOG0327|consen 19 SNWNEVVDSFDDMNLKESLLRGIYA-YGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQA 97 (397)
T ss_pred ccHHHHhhhhhhcCCCHHHHhHHHh-hccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHH
Confidence 4555566678999999999999998 9999999999999999999999999999999 1111011
Q ss_pred --------------------------ee--------------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcc
Q psy4493 101 --------------------------CL--------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLA 139 (323)
Q Consensus 101 --------------------------~l--------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~ 139 (323)
.. ......++|+++||+++.. .++. ......++
T Consensus 98 lilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~d------ml~~~~l~~~~iK 171 (397)
T KOG0327|consen 98 LILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFD------MLNRGSLSTDGIK 171 (397)
T ss_pred HHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHH------hhcccccccccee
Confidence 10 2333458999999999975 3333 34455799
Q ss_pred eEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCc----eeEE
Q psy4493 140 RIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNL----FYEV 215 (323)
Q Consensus 140 ~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~----~~~~ 215 (323)
++|+|||+.++..| |+.++..+ +....++.|++++|||.+.++...-.++ +.+|..+....+...+ ++.+
T Consensus 172 mfvlDEaDEmLs~g--fkdqI~~i--f~~lp~~vQv~l~SAT~p~~vl~vt~~f--~~~pv~i~vkk~~ltl~gikq~~i 245 (397)
T KOG0327|consen 172 MFVLDEADEMLSRG--FKDQIYDI--FQELPSDVQVVLLSATMPSDVLEVTKKF--MREPVRILVKKDELTLEGIKQFYI 245 (397)
T ss_pred EEeecchHhhhccc--hHHHHHHH--HHHcCcchhheeecccCcHHHHHHHHHh--ccCceEEEecchhhhhhheeeeee
Confidence 99999999999954 88887665 5555568899999999999887665666 4555555543333222 2222
Q ss_pred EecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------
Q psy4493 216 RIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------ 277 (323)
Q Consensus 216 ~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------ 277 (323)
. ..+++|++.|..+.. .-.+.+|||||++.+..+...|.+++..+..+|+.|.+.+
T Consensus 246 ~---v~k~~k~~~l~dl~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIt 319 (397)
T KOG0327|consen 246 N---VEKEEKLDTLCDLYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLIT 319 (397)
T ss_pred e---ccccccccHHHHHHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEee
Confidence 2 223347888888776 5578899999999999999999999999999999999998
Q ss_pred ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+.++||+|+.+++.||||++|.....|+||+||+||.|++|.++
T Consensus 320 tdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~i 364 (397)
T KOG0327|consen 320 TDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAI 364 (397)
T ss_pred ccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceee
Confidence 999999999999999999999999999999999999999999765
No 42
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3.5e-33 Score=271.21 Aligned_cols=283 Identities=18% Similarity=0.211 Sum_probs=192.7
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHH-HhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHh-cC
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINI-ALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIAL-LK 82 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~-~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~-~~ 82 (323)
++.++++.+.|++ .++..++|+|.++++. ...++++++.+|||+|||......+.+ .+. .+
T Consensus 6 l~l~~~~~~~l~~-~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~----------------~l~~~~ 68 (720)
T PRK00254 6 LRVDERIKRVLKE-RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVN----------------KLLREG 68 (720)
T ss_pred cCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHH----------------HHHhcC
Confidence 5677888888887 6999999999999986 678999999999999999765443322 222 35
Q ss_pred CcEEEEccchh-------hhh---hcCeee----------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceE
Q psy4493 83 KDAIIIMPTGK-------LLK---KKKICL----------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARI 141 (323)
Q Consensus 83 ~~~lv~~pTgs-------~l~---~~~i~l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~v 141 (323)
..+++++||.+ .+. ..|+.+ ......++|+|+||+++.. +++. ....++++++
T Consensus 69 ~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~------ll~~~~~~l~~l~lv 142 (720)
T PRK00254 69 GKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDS------LLRHGSSWIKDVKLV 142 (720)
T ss_pred CeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHH------HHhCCchhhhcCCEE
Confidence 67999999999 222 334542 1112457999999999853 2222 2235689999
Q ss_pred EEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEE-----
Q psy4493 142 AIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVR----- 216 (323)
Q Consensus 142 VvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~----- 216 (323)
||||+|.+.+++ +.+.+..+ +....++.|++++|||+++ .+++.+|++... +.....+..+...+.
T Consensus 143 ViDE~H~l~~~~--rg~~le~i--l~~l~~~~qiI~lSATl~n--~~~la~wl~~~~---~~~~~rpv~l~~~~~~~~~~ 213 (720)
T PRK00254 143 VADEIHLIGSYD--RGATLEMI--LTHMLGRAQILGLSATVGN--AEELAEWLNAEL---VVSDWRPVKLRKGVFYQGFL 213 (720)
T ss_pred EEcCcCccCCcc--chHHHHHH--HHhcCcCCcEEEEEccCCC--HHHHHHHhCCcc---ccCCCCCCcceeeEecCCee
Confidence 999999998754 33333222 2233347899999999987 367788887532 111111111111110
Q ss_pred ecCCc-----hhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhC-----------------------------
Q psy4493 217 IKPAA-----QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR----------------------------- 262 (323)
Q Consensus 217 ~~~~~-----~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~----------------------------- 262 (323)
..... .......+.+.+. .+.++||||+|++.|+.++..|.+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 290 (720)
T PRK00254 214 FWEDGKIERFPNSWESLVYDAVK---KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKL 290 (720)
T ss_pred eccCcchhcchHHHHHHHHHHHH---hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHH
Confidence 00111 0112233444444 5689999999999998888766421
Q ss_pred ----CCeEEeecCCCCCCc------------------ceeeecccccCCccEEEE-------ccCCC-CHhHHHHHhccC
Q psy4493 263 ----GLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIH-------HCLSK-SMENFYQVSIAF 312 (323)
Q Consensus 263 ----~~~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~-------~~~p~-~~~~~~qr~GR~ 312 (323)
...++++|++|++++ |+++++|+|+|.++.||. ++.|. +..+|+||+|||
T Consensus 291 ~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRA 370 (720)
T PRK00254 291 KKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRA 370 (720)
T ss_pred HHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhcc
Confidence 124899999999998 999999999999999984 55543 567999999999
Q ss_pred CCCC--CCCCCC
Q psy4493 313 GLGK--HSFRSR 322 (323)
Q Consensus 313 gR~g--~~g~~~ 322 (323)
||.| ..|.++
T Consensus 371 GR~~~d~~G~~i 382 (720)
T PRK00254 371 GRPKYDEVGEAI 382 (720)
T ss_pred CCCCcCCCceEE
Confidence 9976 456554
No 43
>KOG0347|consensus
Probab=100.00 E-value=1.3e-34 Score=255.56 Aligned_cols=273 Identities=16% Similarity=0.106 Sum_probs=191.6
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC-CcEEEEccchh-hhhhcCee-----------------
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK-KDAIIIMPTGK-LLKKKKIC----------------- 101 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~~pTgs-~l~~~~i~----------------- 101 (323)
+=+.+|++++.+..++.+|.+ +||..|+++|..++|++..| .|++-.|.||| ...++||+
T Consensus 178 ~DvsAW~~l~lp~~iL~aL~~-~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRALSN-LGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred cChHHHhcCCCCHHHHHHHHh-cCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 446789999999999999998 99999999999999999998 78999999999 11111111
Q ss_pred ----------e----------------------------------------eccCCCeeEEEEcccccccchhHHHHHHH
Q psy4493 102 ----------L----------------------------------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK 131 (323)
Q Consensus 102 ----------l----------------------------------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~ 131 (323)
| +.....++|+|+||++|.. .+.+.-..
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlwe--li~e~n~~ 334 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWE--LIEEDNTH 334 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHH--HHHhhhhh
Confidence 0 3334478999999999974 11111111
Q ss_pred HHhhCCcceEEEeccccccccCCCchHHHHhHHHHHh---hCCCCCEEEEeecCChhH--------------------HH
Q psy4493 132 MYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT---MFPDVPILGLTATATTKV--------------------ML 188 (323)
Q Consensus 132 ~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~---~~~~~~~i~lSAT~~~~~--------------------~~ 188 (323)
...+.+++++|+||||+|.+.|| |. .+..|-.... ..+..|.+.||||++-.. .+
T Consensus 335 l~~~k~vkcLVlDEaDRmvekgh-F~-Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq 412 (731)
T KOG0347|consen 335 LGNFKKVKCLVLDEADRMVEKGH-FE-ELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQ 412 (731)
T ss_pred hhhhhhceEEEEccHHHHhhhcc-HH-HHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHH
Confidence 34567899999999999999772 33 2233322222 113668999999987322 22
Q ss_pred HHHHHhCCCC-cEEEecCCCCCC---ceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCC
Q psy4493 189 DVQKMLQIED-CVVIKAPFNRPN---LFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGL 264 (323)
Q Consensus 189 ~i~~~l~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~ 264 (323)
.+++.+|+.. +.+++....... +.-....++....+ -.|+-+|. . -.+++|||||+...+..++-.|+..++
T Consensus 413 ~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD--~ylyYfl~-r-yPGrTlVF~NsId~vKRLt~~L~~L~i 488 (731)
T KOG0347|consen 413 HLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKD--LYLYYFLT-R-YPGRTLVFCNSIDCVKRLTVLLNNLDI 488 (731)
T ss_pred HHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccc--eeEEEEEe-e-cCCceEEEechHHHHHHHHHHHhhcCC
Confidence 3444445532 344443211100 00000000000000 00111111 1 357999999999999999999999999
Q ss_pred eEEeecCCCCCCc------------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 265 RVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 265 ~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
....+|+.|.+.+ ||+++||+|+|.|.+||||-.|.+...|+||.||++|++.+|.++
T Consensus 489 ~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsv 564 (731)
T KOG0347|consen 489 PPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSV 564 (731)
T ss_pred CCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEE
Confidence 9999999999988 999999999999999999999999999999999999999999764
No 44
>KOG4284|consensus
Probab=100.00 E-value=5.7e-34 Score=255.57 Aligned_cols=275 Identities=15% Similarity=0.159 Sum_probs=211.5
Q ss_pred cCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHh---cCCcEEEEccchh--
Q psy4493 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIAL---LKKDAIIIMPTGK-- 93 (323)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~---~~~~~lv~~pTgs-- 93 (323)
-++.-+.+.|.++|+.++++-|+++-+..|.|||-.+.- .|+..+- ..-..++++||..
T Consensus 43 n~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv----------------~av~sl~~~~~~~q~~Iv~PTREia 106 (980)
T KOG4284|consen 43 NAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSV----------------LAVESLDSRSSHIQKVIVTPTREIA 106 (980)
T ss_pred hcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEe----------------eeehhcCcccCcceeEEEecchhhh
Confidence 367888899999999999999999999999999932111 1111111 1234899999998
Q ss_pred -----hhhhcCee---------e--------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceEEEecccccc
Q psy4493 94 -----LLKKKKIC---------L--------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARIAIDEVHCCS 150 (323)
Q Consensus 94 -----~l~~~~i~---------l--------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~vVvDEah~~~ 150 (323)
.+.+.++. + .......+|+|+||++++. +++. ..+...++++|+||||.+.
T Consensus 107 VQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~q------L~el~~~n~s~vrlfVLDEADkL~ 180 (980)
T KOG4284|consen 107 VQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQ------LVELGAMNMSHVRLFVLDEADKLM 180 (980)
T ss_pred hHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHH------HHHhcCCCccceeEEEeccHHhhh
Confidence 33333332 1 3344677899999999974 3333 5677899999999999999
Q ss_pred ccCCCchHHHHhHHHHHhhCC-CCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCc----eeEEEecCC-c---
Q psy4493 151 SWGHDFRPDYQYLSILKTMFP-DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNL----FYEVRIKPA-A--- 221 (323)
Q Consensus 151 ~~~~~~r~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~-~--- 221 (323)
+.+ .|+.++.. +...+| ..|++++|||.+..+-+.+.++ +.+|.++..+.+.+.+ +|.+..... .
T Consensus 181 ~t~-sfq~~In~---ii~slP~~rQv~a~SATYp~nLdn~Lsk~--mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsve 254 (980)
T KOG4284|consen 181 DTE-SFQDDINI---IINSLPQIRQVAAFSATYPRNLDNLLSKF--MRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVE 254 (980)
T ss_pred chh-hHHHHHHH---HHHhcchhheeeEEeccCchhHHHHHHHH--hcccceeecccCCceeechhheeeeccCCcchHH
Confidence 864 67777655 445555 7899999999999988877777 5677777776655544 233332221 1
Q ss_pred -hhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeee
Q psy4493 222 -QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282 (323)
Q Consensus 222 -~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~ 282 (323)
...++..|-++++ ..+-.+.||||++...|+-++.+|...|+.|.++.|.|++.+ ||..+
T Consensus 255 emrlklq~L~~vf~-~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLta 333 (980)
T KOG4284|consen 255 EMRLKLQKLTHVFK-SIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTA 333 (980)
T ss_pred HHHHHHHHHHHHHh-hCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhh
Confidence 2234555555555 346678899999999999999999999999999999999999 99999
Q ss_pred cccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 283 LGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 283 ~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
||||-++|++|||.|.|.+-.+|.||+|||||.|..|-++
T Consensus 334 RGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aV 373 (980)
T KOG4284|consen 334 RGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAV 373 (980)
T ss_pred ccCCccccceEEecCCCcchHHHHHHhhhcccccccceeE
Confidence 9999999999999999999999999999999999998665
No 45
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.2e-32 Score=263.27 Aligned_cols=283 Identities=18% Similarity=0.189 Sum_probs=189.4
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCc
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD 84 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~ 84 (323)
++.++++.+.+.+. +++ ++++|.++++.+..++++++.+|||+|||.....++.+ .+..+..
T Consensus 6 ~~l~~~~~~~~~~~-~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~----------------~l~~~~k 67 (674)
T PRK01172 6 LGYDDEFLNLFTGN-DFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYE----------------TFLAGLK 67 (674)
T ss_pred cCCCHHHHHHHhhC-CCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHH----------------HHHhCCc
Confidence 55667777777654 444 89999999999999999999999999999765444422 2345678
Q ss_pred EEEEccchh----------hhhhcCeee----------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceEEE
Q psy4493 85 AIIIMPTGK----------LLKKKKICL----------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARIAI 143 (323)
Q Consensus 85 ~lv~~pTgs----------~l~~~~i~l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~vVv 143 (323)
+++++|+.+ .+...|+.+ .......+|+|+||+++.. .++. .....+++++|+
T Consensus 68 ~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~------l~~~~~~~l~~v~lvVi 141 (674)
T PRK01172 68 SIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADS------LIHHDPYIINDVGLIVA 141 (674)
T ss_pred EEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHH------HHhCChhHHhhcCEEEE
Confidence 999999999 222334442 0112457999999998753 2222 234568999999
Q ss_pred eccccccccCCCchHHHHhH-HHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEec----
Q psy4493 144 DEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIK---- 218 (323)
Q Consensus 144 DEah~~~~~~~~~r~~~~~l-~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~---- 218 (323)
||||++.+.+ +.+.+..+ ..++...++.|++++|||+++ .+++.+|++... +.....+.++...+...
T Consensus 142 DEaH~l~d~~--rg~~le~ll~~~~~~~~~~riI~lSATl~n--~~~la~wl~~~~---~~~~~r~vpl~~~i~~~~~~~ 214 (674)
T PRK01172 142 DEIHIIGDED--RGPTLETVLSSARYVNPDARILALSATVSN--ANELAQWLNASL---IKSNFRPVPLKLGILYRKRLI 214 (674)
T ss_pred ecchhccCCC--ccHHHHHHHHHHHhcCcCCcEEEEeCccCC--HHHHHHHhCCCc---cCCCCCCCCeEEEEEecCeee
Confidence 9999997643 33333332 334444458899999999987 456788876432 22222222222111110
Q ss_pred -CCchhHHHHHHHHHHHh-hcCCCcEEEEeCChhHHHHHHHHHHhC-------------------------CCeEEeecC
Q psy4493 219 -PAAQKDCLDELADLMSR-RFRNQSGIIYTTSIKECEDLREELRNR-------------------------GLRVSAYHA 271 (323)
Q Consensus 219 -~~~~~~~~~~l~~~l~~-~~~~~~~iVF~~s~~~~~~l~~~L~~~-------------------------~~~v~~~h~ 271 (323)
....... ..+..++.+ ..+++++||||+|++.|+.+++.|.+. ...++++||
T Consensus 215 ~~~~~~~~-~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~ha 293 (674)
T PRK01172 215 LDGYERSQ-VDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHA 293 (674)
T ss_pred eccccccc-ccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecC
Confidence 0000000 112222322 125789999999999999999988653 124789999
Q ss_pred CCCCCc------------------ceeeecccccCCccEEEEccC---------CCCHhHHHHHhccCCCCCCCCC
Q psy4493 272 KLESNV------------------SIAFGLGIDKPNVRFVIHHCL---------SKSMENFYQVSIAFGLGKHSFR 320 (323)
Q Consensus 272 ~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~---------p~~~~~~~qr~GR~gR~g~~g~ 320 (323)
+|++++ |+++++|+|+|+. .||+.|. |.+..+|.||+|||||.|.++.
T Consensus 294 gl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 368 (674)
T PRK01172 294 GLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQY 368 (674)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCc
Confidence 999988 9999999999975 5555543 4588899999999999996443
No 46
>KOG0339|consensus
Probab=100.00 E-value=6.6e-33 Score=242.68 Aligned_cols=280 Identities=16% Similarity=0.188 Sum_probs=217.6
Q ss_pred cCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHh-cCCCCCCCcchHHHHHHHhcC--CcEEEEccchh--
Q psy4493 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKS-KFNLTDFRPNQLAAINIALLK--KDAIIIMPTGK-- 93 (323)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~-~~g~~~~~~~Q~~~i~~~~~~--~~~lv~~pTgs-- 93 (323)
.+++.+.|.|-+++...+.+++++-++.||+|||++++--..- .+ -|. .+..| .-.++++||.+
T Consensus 241 ~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~him-------dq~----eL~~g~gPi~vilvPTrela 309 (731)
T KOG0339|consen 241 SEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIM-------DQP----ELKPGEGPIGVILVPTRELA 309 (731)
T ss_pred hhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhc-------chh----hhcCCCCCeEEEEeccHHHH
Confidence 3577888999999999999999999999999999875432211 11 121 23323 44799999999
Q ss_pred --------hh-hhcCee---e----------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceEEEecccccc
Q psy4493 94 --------LL-KKKKIC---L----------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARIAIDEVHCCS 150 (323)
Q Consensus 94 --------~l-~~~~i~---l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~vVvDEah~~~ 150 (323)
.+ +..|++ + ......+.+|||||++|++ +++. ...+.++.++|+|||++|.
T Consensus 310 ~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid------~VkmKatn~~rvS~LV~DEadrmf 383 (731)
T KOG0339|consen 310 SQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLID------MVKMKATNLSRVSYLVLDEADRMF 383 (731)
T ss_pred HHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHH------HHHhhcccceeeeEEEEechhhhh
Confidence 22 334444 1 2333678999999999986 4433 4566799999999999999
Q ss_pred ccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecC--CCCCCceeEEEecCCchhHHHHH
Q psy4493 151 SWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAP--FNRPNLFYEVRIKPAAQKDCLDE 228 (323)
Q Consensus 151 ~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 228 (323)
+.| |.++...| -.+..|+.|.++||||....+.......|+- +..++..+ .....+...+..++. ...|+..
T Consensus 384 dmG--fe~qVrSI--~~hirpdrQtllFsaTf~~kIe~lard~L~d-pVrvVqg~vgean~dITQ~V~V~~s-~~~Kl~w 457 (731)
T KOG0339|consen 384 DMG--FEPQVRSI--KQHIRPDRQTLLFSATFKKKIEKLARDILSD-PVRVVQGEVGEANEDITQTVSVCPS-EEKKLNW 457 (731)
T ss_pred ccc--cHHHHHHH--HhhcCCcceEEEeeccchHHHHHHHHHHhcC-CeeEEEeehhccccchhheeeeccC-cHHHHHH
Confidence 966 99988776 3344579999999999999987777777643 23333333 333344444443333 4668888
Q ss_pred HHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeeecccccCCc
Q psy4493 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNV 290 (323)
Q Consensus 229 l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~~Gid~~~v 290 (323)
|...|......+++|||+.-+..+++++..|.-.|++|..+||++.+.+ ||+.+||+|+|++
T Consensus 458 l~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~i 537 (731)
T KOG0339|consen 458 LLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSI 537 (731)
T ss_pred HHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCcccc
Confidence 8888876666789999999999999999999999999999999998887 9999999999999
Q ss_pred cEEEEccCCCCHhHHHHHhccCCCCCCCCCC
Q psy4493 291 RFVIHHCLSKSMENFYQVSIAFGLGKHSFRS 321 (323)
Q Consensus 291 ~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~ 321 (323)
..|||||+..++..|.||+||+||.|..|.+
T Consensus 538 kTVvnyD~ardIdththrigrtgRag~kGva 568 (731)
T KOG0339|consen 538 KTVVNYDFARDIDTHTHRIGRTGRAGEKGVA 568 (731)
T ss_pred ceeecccccchhHHHHHHhhhccccccccee
Confidence 9999999999999999999999999998865
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=7.6e-32 Score=268.23 Aligned_cols=275 Identities=18% Similarity=0.179 Sum_probs=196.3
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcC------CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHH
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK------KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINI 78 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~------~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~ 78 (323)
|+-+.+..+.+...|.+ .+++.|.++++.++.+ .|.++.++||+|||+.+..++. .+
T Consensus 583 ~~~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~----------------~~ 645 (1147)
T PRK10689 583 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF----------------LA 645 (1147)
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHH----------------HH
Confidence 44445567778888888 5899999999999876 7899999999999976544332 22
Q ss_pred HhcCCcEEEEccchh-------h----hhhcCeee-----------------eccCCCeeEEEEcccccccchhHHHHHH
Q psy4493 79 ALLKKDAIIIMPTGK-------L----LKKKKICL-----------------MTESSSLKLLYVSPEKLAKSKSFMTKLQ 130 (323)
Q Consensus 79 ~~~~~~~lv~~pTgs-------~----l~~~~i~l-----------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~ 130 (323)
+..++.+++++||.. . +...++.+ ....+.++|+|+||+.+..
T Consensus 646 ~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~--------- 716 (1147)
T PRK10689 646 VENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQS--------- 716 (1147)
T ss_pred HHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhC---------
Confidence 456888999999999 2 22223331 1123578999999975532
Q ss_pred HHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCC-CC
Q psy4493 131 KMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFN-RP 209 (323)
Q Consensus 131 ~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-~~ 209 (323)
.....+++++||||+|++.. + ....++...++.++++||||+.+..... ...++.++..+..+.. +.
T Consensus 717 -~v~~~~L~lLVIDEahrfG~-----~----~~e~lk~l~~~~qvLl~SATpiprtl~l--~~~gl~d~~~I~~~p~~r~ 784 (1147)
T PRK10689 717 -DVKWKDLGLLIVDEEHRFGV-----R----HKERIKAMRADVDILTLTATPIPRTLNM--AMSGMRDLSIIATPPARRL 784 (1147)
T ss_pred -CCCHhhCCEEEEechhhcch-----h----HHHHHHhcCCCCcEEEEcCCCCHHHHHH--HHhhCCCcEEEecCCCCCC
Confidence 11234799999999998722 1 1233455556899999999998876542 2334666666665332 33
Q ss_pred CceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhC--CCeEEeecCCCCCCc----------
Q psy4493 210 NLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR--GLRVSAYHAKLESNV---------- 277 (323)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~--~~~v~~~h~~~~~~~---------- 277 (323)
.+...+.... .......+...+. .+++++||||+++.++.+++.|.+. +.++..+||+|++++
T Consensus 785 ~v~~~~~~~~--~~~~k~~il~el~---r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~ 859 (1147)
T PRK10689 785 AVKTFVREYD--SLVVREAILREIL---RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 859 (1147)
T ss_pred CceEEEEecC--cHHHHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh
Confidence 4433332221 1111223332222 5689999999999999999999987 788999999999987
Q ss_pred --------ceeeecccccCCccEEEEccCC-CCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 --------SIAFGLGIDKPNVRFVIHHCLS-KSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 --------T~~~~~Gid~~~v~~Vi~~~~p-~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++++|+|+|++++||..+.. .+..+|+||+||+||.|+.|.|+
T Consensus 860 Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ 913 (1147)
T PRK10689 860 QRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAW 913 (1147)
T ss_pred cCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEE
Confidence 9999999999999999965432 35678999999999999999886
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2e-31 Score=256.22 Aligned_cols=272 Identities=15% Similarity=0.185 Sum_probs=192.2
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHhcC------CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC
Q psy4493 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLK------KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK 82 (323)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~------~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~ 82 (323)
....+.+.+.+.+ .+++.|.++++.+..+ .+.++.+|||+|||......+ +..+..|
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~i----------------l~~~~~g 310 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAA----------------LAAIEAG 310 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHH----------------HHHHHcC
Confidence 3456667777777 4899999999988765 368999999999997655444 2234467
Q ss_pred CcEEEEccchh-----------hhhhcCeee-----------------eccCCCeeEEEEcccccccchhHHHHHHHHHh
Q psy4493 83 KDAIIIMPTGK-----------LLKKKKICL-----------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYK 134 (323)
Q Consensus 83 ~~~lv~~pTgs-----------~l~~~~i~l-----------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~ 134 (323)
..+++++||.. .+...|+++ ....+.++|+|+||+.+... ..
T Consensus 311 ~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~----------v~ 380 (681)
T PRK10917 311 YQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD----------VE 380 (681)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc----------ch
Confidence 78999999999 223334541 12345799999999887531 12
Q ss_pred hCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEec-CCCCCCcee
Q psy4493 135 AGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKA-PFNRPNLFY 213 (323)
Q Consensus 135 ~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~~ 213 (323)
+.+++++||||+|++.. ..|. .+.....++++++||||+.+.... ....+..+...+.. +..+.++..
T Consensus 381 ~~~l~lvVIDE~Hrfg~---~qr~------~l~~~~~~~~iL~~SATp~prtl~--~~~~g~~~~s~i~~~p~~r~~i~~ 449 (681)
T PRK10917 381 FHNLGLVIIDEQHRFGV---EQRL------ALREKGENPHVLVMTATPIPRTLA--MTAYGDLDVSVIDELPPGRKPITT 449 (681)
T ss_pred hcccceEEEechhhhhH---HHHH------HHHhcCCCCCEEEEeCCCCHHHHH--HHHcCCCceEEEecCCCCCCCcEE
Confidence 35899999999998743 1222 233444468999999999875432 33344444444443 333444543
Q ss_pred EEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCCh--------hHHHHHHHHHHhC--CCeEEeecCCCCCCc------
Q psy4493 214 EVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSI--------KECEDLREELRNR--GLRVSAYHAKLESNV------ 277 (323)
Q Consensus 214 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~--------~~~~~l~~~L~~~--~~~v~~~h~~~~~~~------ 277 (323)
.+... ......++.+.+.+. .+.+++|||+.+ ..++.+++.|.+. ++++..+||+|++++
T Consensus 450 ~~~~~-~~~~~~~~~i~~~~~---~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~ 525 (681)
T PRK10917 450 VVIPD-SRRDEVYERIREEIA---KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMA 525 (681)
T ss_pred EEeCc-ccHHHHHHHHHHHHH---cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHH
Confidence 33322 122223334444332 678999999964 4566778888765 578999999999988
Q ss_pred ------------ceeeecccccCCccEEEEccCCC-CHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 ------------SIAFGLGIDKPNVRFVIHHCLSK-SMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 ------------T~~~~~Gid~~~v~~Vi~~~~p~-~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++++|+|+|++++||+++.|. +...|.||+||+||.|.+|.|+
T Consensus 526 ~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 583 (681)
T PRK10917 526 AFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCV 583 (681)
T ss_pred HHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEE
Confidence 99999999999999999999987 5788999999999999999986
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.7e-31 Score=252.82 Aligned_cols=275 Identities=16% Similarity=0.181 Sum_probs=190.4
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCC------CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHH
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKK------DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINI 78 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~------~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~ 78 (323)
++|..+..+.+.+.+++ .+++.|.++++.++.+. +.++.+|||+|||..+...+ +..
T Consensus 218 ~~~~~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~i----------------l~~ 280 (630)
T TIGR00643 218 ANPSEELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAM----------------LAA 280 (630)
T ss_pred CCCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHH----------------HHH
Confidence 55666666667777877 68999999999887642 47899999999997654433 223
Q ss_pred HhcCCcEEEEccchh-----------hhhhcCeee-----------------eccCCCeeEEEEcccccccchhHHHHHH
Q psy4493 79 ALLKKDAIIIMPTGK-----------LLKKKKICL-----------------MTESSSLKLLYVSPEKLAKSKSFMTKLQ 130 (323)
Q Consensus 79 ~~~~~~~lv~~pTgs-----------~l~~~~i~l-----------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~ 130 (323)
+..|..+++++||.. .+...|+++ ....+.++|+|+||..+.+.
T Consensus 281 ~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~-------- 352 (630)
T TIGR00643 281 IEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK-------- 352 (630)
T ss_pred HHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc--------
Confidence 446788999999999 222234541 12345689999999877531
Q ss_pred HHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCC---CCCEEEEeecCChhHHHHHHHHhCCCCcEEEec-CC
Q psy4493 131 KMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP---DVPILGLTATATTKVMLDVQKMLQIEDCVVIKA-PF 206 (323)
Q Consensus 131 ~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~---~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~ 206 (323)
..+.+++++||||+|++.. ..|.. +..... ++++++||||+.+.... ....+.-+...+.. +.
T Consensus 353 --~~~~~l~lvVIDEaH~fg~---~qr~~------l~~~~~~~~~~~~l~~SATp~prtl~--l~~~~~l~~~~i~~~p~ 419 (630)
T TIGR00643 353 --VEFKRLALVIIDEQHRFGV---EQRKK------LREKGQGGFTPHVLVMSATPIPRTLA--LTVYGDLDTSIIDELPP 419 (630)
T ss_pred --ccccccceEEEechhhccH---HHHHH------HHHhcccCCCCCEEEEeCCCCcHHHH--HHhcCCcceeeeccCCC
Confidence 1235899999999998643 12222 233333 67899999998775432 22223222222222 22
Q ss_pred CCCCceeEEEecCCchhHHHHHHHHHHHhh-cCCCcEEEEeCCh--------hHHHHHHHHHHhC--CCeEEeecCCCCC
Q psy4493 207 NRPNLFYEVRIKPAAQKDCLDELADLMSRR-FRNQSGIIYTTSI--------KECEDLREELRNR--GLRVSAYHAKLES 275 (323)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~iVF~~s~--------~~~~~l~~~L~~~--~~~v~~~h~~~~~ 275 (323)
.+.++...+.... .. ..+++.+.+. .++.+++|||+.. ..++.+++.|.+. ++.+..+||+|++
T Consensus 420 ~r~~i~~~~~~~~-~~----~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~ 494 (630)
T TIGR00643 420 GRKPITTVLIKHD-EK----DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKS 494 (630)
T ss_pred CCCceEEEEeCcc-hH----HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCH
Confidence 3334443333221 11 3444444332 2578999999876 4566778888763 7789999999999
Q ss_pred Cc------------------ceeeecccccCCccEEEEccCCC-CHhHHHHHhccCCCCCCCCCCC
Q psy4493 276 NV------------------SIAFGLGIDKPNVRFVIHHCLSK-SMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 276 ~~------------------T~~~~~Gid~~~v~~Vi~~~~p~-~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
++ |+++++|+|+|++++||+++.|. +...|.||+||+||.|++|.|+
T Consensus 495 ~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 495 DEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCL 560 (630)
T ss_pred HHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEE
Confidence 87 99999999999999999999986 6888999999999999999986
No 50
>KOG0334|consensus
Probab=100.00 E-value=9.9e-33 Score=260.58 Aligned_cols=298 Identities=16% Similarity=0.201 Sum_probs=221.1
Q ss_pred cHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEE
Q psy4493 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAII 87 (323)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv 87 (323)
+..+...+ +.+++...++.|.++++++.+|+|++.++.||+|||-.+..-+-. ... .|-. .....|.-.++
T Consensus 373 ~~~il~tl-kkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmir-hi~-----dQr~--~~~gdGPi~li 443 (997)
T KOG0334|consen 373 SSKILETL-KKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIR-HIK-----DQRP--LEEGDGPIALI 443 (997)
T ss_pred hHHHHHHH-HHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhh-hhh-----cCCC--hhhCCCceEEE
Confidence 44566777 888999999999999999999999999999999999553222211 000 1110 11123455899
Q ss_pred Eccchh-----------hhhhcCeee-------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEE
Q psy4493 88 IMPTGK-----------LLKKKKICL-------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAI 143 (323)
Q Consensus 88 ~~pTgs-----------~l~~~~i~l-------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVv 143 (323)
++||.. -+...++.+ ........|+||||++..+- .. .--.+.....++.++|+
T Consensus 444 ~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~-l~-~n~grvtnlrR~t~lv~ 521 (997)
T KOG0334|consen 444 LAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDI-LC-ANSGRVTNLRRVTYLVL 521 (997)
T ss_pred EcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhh-Hh-hcCCccccccccceeee
Confidence 999999 222244441 22233489999999998751 00 00011234456679999
Q ss_pred eccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEec--CCCCCCceeEEEecCCc
Q psy4493 144 DEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKA--PFNRPNLFYEVRIKPAA 221 (323)
Q Consensus 144 DEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 221 (323)
||||.|++.| |.|+...| +....|..|.+++|||.+..+...-...+. .+..++-. +.-...+...+..+. .
T Consensus 522 deaDrmfdmg--fePq~~~I--i~nlrpdrQtvlfSatfpr~m~~la~~vl~-~Pveiiv~~~svV~k~V~q~v~V~~-~ 595 (997)
T KOG0334|consen 522 DEADRMFDMG--FEPQITRI--LQNLRPDRQTVLFSATFPRSMEALARKVLK-KPVEIIVGGRSVVCKEVTQVVRVCA-I 595 (997)
T ss_pred chhhhhheec--cCcccchH--HhhcchhhhhhhhhhhhhHHHHHHHHHhhc-CCeeEEEccceeEeccceEEEEEec-C
Confidence 9999999855 88887664 666667899999999999986555555665 33332222 222333443333333 2
Q ss_pred hhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeeec
Q psy4493 222 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGL 283 (323)
Q Consensus 222 ~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~~ 283 (323)
+.+|+..|.++|.....+.++||||.+...|..+.+.|.+.|+.+..+||+.++.+ |+++++
T Consensus 596 e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvar 675 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVAR 675 (997)
T ss_pred chHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhc
Confidence 46689999999987778999999999999999999999999999999999999987 999999
Q ss_pred ccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 284 GIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 284 Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+|++++..|||||+|.-...|+||+||+||.|+.|.|+
T Consensus 676 GLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~Av 714 (997)
T KOG0334|consen 676 GLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAV 714 (997)
T ss_pred ccccccceEEEEcccchhHHHHHHHhcccccCCccceeE
Confidence 999999999999999999999999999999999999664
No 51
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2.8e-31 Score=269.98 Aligned_cols=281 Identities=17% Similarity=0.185 Sum_probs=196.7
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEc
Q psy4493 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIM 89 (323)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~ 89 (323)
+..+.+++.+|+ .+++.|..+++.+++++|+++.+|||+|||... |..++-...++..++|++
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~----------------~~~al~~~~~g~~aLVl~ 129 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFG----------------AFIALFLALKGKKCYIIL 129 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHH----------------HHHHHHHHhcCCeEEEEE
Confidence 466778888899 699999999999999999999999999999631 111121223567899999
Q ss_pred cchh-------hhhh------cCeee-----------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcc
Q psy4493 90 PTGK-------LLKK------KKICL-----------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLA 139 (323)
Q Consensus 90 pTgs-------~l~~------~~i~l-----------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~ 139 (323)
||.+ .+.. .++.+ ....+.++|+|+||++|.+ .+ ..... .+++
T Consensus 130 PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~--~~----~~l~~-~~i~ 202 (1638)
T PRK14701 130 PTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLAR--NF----PEMKH-LKFD 202 (1638)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHH--hH----HHHhh-CCCC
Confidence 9999 2222 12331 1124568999999998864 22 22212 5799
Q ss_pred eEEEeccccccccCC---------CchHHHHh----H-------------------HHHHhhCC-CCC-EEEEeecCChh
Q psy4493 140 RIAIDEVHCCSSWGH---------DFRPDYQY----L-------------------SILKTMFP-DVP-ILGLTATATTK 185 (323)
Q Consensus 140 ~vVvDEah~~~~~~~---------~~r~~~~~----l-------------------~~l~~~~~-~~~-~i~lSAT~~~~ 185 (323)
++||||||++++||+ +|++++.. + ......++ ..+ .+.+|||.++.
T Consensus 203 ~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r 282 (1638)
T PRK14701 203 FIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK 282 (1638)
T ss_pred EEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch
Confidence 999999999999887 78888753 1 11111223 334 56799999873
Q ss_pred HHHHHHHHhCCCCcEEEecCCCCCCceeEEEecC-CchhHHHHHHHHHHHhhcCCCcEEEEeCChhH---HHHHHHHHHh
Q psy4493 186 VMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKP-AAQKDCLDELADLMSRRFRNQSGIIYTTSIKE---CEDLREELRN 261 (323)
Q Consensus 186 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~---~~~l~~~L~~ 261 (323)
.++...+ .++..+..+...+++........ .....+ ..+.++++.. +.++||||+|++. |+++++.|.+
T Consensus 283 --~~~~~l~--~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~ 355 (1638)
T PRK14701 283 --GDRVKLY--RELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLE 355 (1638)
T ss_pred --hHHHHHh--hcCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHH
Confidence 2333443 34455555555555433222211 112222 5677777653 5789999999875 5899999999
Q ss_pred CCCeEEeecCCCCCCc-------------c----eeeecccccCC-ccEEEEccCCC---CHhHHHHHh-----------
Q psy4493 262 RGLRVSAYHAKLESNV-------------S----IAFGLGIDKPN-VRFVIHHCLSK---SMENFYQVS----------- 309 (323)
Q Consensus 262 ~~~~v~~~h~~~~~~~-------------T----~~~~~Gid~~~-v~~Vi~~~~p~---~~~~~~qr~----------- 309 (323)
.|+++..+||+..... | ++++||||+|+ |++|||||+|+ +...|.|..
T Consensus 356 ~Gi~a~~~h~~R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~ 435 (1638)
T PRK14701 356 DGFKIELVSAKNKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEIL 435 (1638)
T ss_pred CCCeEEEecchHHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHH
Confidence 9999999999733222 6 58999999999 99999999999 877676665
Q ss_pred --ccCCCCCCCCCC
Q psy4493 310 --IAFGLGKHSFRS 321 (323)
Q Consensus 310 --GR~gR~g~~g~~ 321 (323)
||+||.|.++.+
T Consensus 436 ~~~~a~~~g~~~~~ 449 (1638)
T PRK14701 436 KIEEELKEGIPIEG 449 (1638)
T ss_pred HhhhhcccCCcchh
Confidence 999999987655
No 52
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.98 E-value=4.4e-31 Score=249.69 Aligned_cols=269 Identities=14% Similarity=0.135 Sum_probs=178.4
Q ss_pred hHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhc-C---CCCCCCcchHHHHHHHhcCCcEEEEccchh-------hh
Q psy4493 27 NQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSK-F---NLTDFRPNQLAAINIALLKKDAIIIMPTGK-------LL 95 (323)
Q Consensus 27 ~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~-~---g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------~l 95 (323)
.|.++++.+..++++++.++||+|||+++...|.+. | ++..+ +.+..-.+++.+++.+||.+ .+
T Consensus 168 iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l-----~~~~~~~~~~~ilvt~PrreLa~qi~~~i 242 (675)
T PHA02653 168 VQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNL-----DKIDPNFIERPIVLSLPRVALVRLHSITL 242 (675)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhh-----hhcccccCCcEEEEECcHHHHHHHHHHHH
Confidence 677889999999999999999999999998888762 2 12111 00110112457999999988 12
Q ss_pred hh-c------Cee--e----------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCc
Q psy4493 96 KK-K------KIC--L----------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDF 156 (323)
Q Consensus 96 ~~-~------~i~--l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~ 156 (323)
.+ . |.+ + .......+++++|+..... ...++++||+||||.+...+
T Consensus 243 ~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~------------~L~~v~~VVIDEaHEr~~~~--- 307 (675)
T PHA02653 243 LKSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTLN------------KLFDYGTVIIDEVHEHDQIG--- 307 (675)
T ss_pred HHHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccccc------------ccccCCEEEccccccCccch---
Confidence 11 1 111 1 0111235789999764221 13479999999999987754
Q ss_pred hHHHHhHHHHHhhCC-CCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCC-CCCceeEEEecCCc-------hhHHHH
Q psy4493 157 RPDYQYLSILKTMFP-DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFN-RPNLFYEVRIKPAA-------QKDCLD 227 (323)
Q Consensus 157 r~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~ 227 (323)
... +..++...+ ..|+++||||++.+.. .+.++++ ++..+..+.. ..++.......... ......
T Consensus 308 -Dll--L~llk~~~~~~rq~ILmSATl~~dv~-~l~~~~~--~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~ 381 (675)
T PHA02653 308 -DII--IAVARKHIDKIRSLFLMTATLEDDRD-RIKEFFP--NPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKK 381 (675)
T ss_pred -hHH--HHHHHHhhhhcCEEEEEccCCcHhHH-HHHHHhc--CCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHH
Confidence 111 222333322 3489999999987653 4566654 4444443322 13332222211100 011112
Q ss_pred HHHHHHHhh--cCCCcEEEEeCChhHHHHHHHHHHhC--CCeEEeecCCCCCCc-----------------ceeeecccc
Q psy4493 228 ELADLMSRR--FRNQSGIIYTTSIKECEDLREELRNR--GLRVSAYHAKLESNV-----------------SIAFGLGID 286 (323)
Q Consensus 228 ~l~~~l~~~--~~~~~~iVF~~s~~~~~~l~~~L~~~--~~~v~~~h~~~~~~~-----------------T~~~~~Gid 286 (323)
.+.+.+... ..++++||||+++++|+.+++.|.+. ++.+..+||++++.+ |+++++|+|
T Consensus 382 ~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVATdIAERGID 461 (675)
T PHA02653 382 NIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNIDEILEKVYSSKNPSIIISTPYLESSVT 461 (675)
T ss_pred HHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHHHHHHHHhccCceeEEeccChhhcccc
Confidence 233333321 13578999999999999999999987 789999999999853 999999999
Q ss_pred cCCccEEEEcc---CCC---------CHhHHHHHhccCCCCCCCCCCC
Q psy4493 287 KPNVRFVIHHC---LSK---------SMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 287 ~~~v~~Vi~~~---~p~---------~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+|+|++||++| .|. |..+|+||+||+||. ++|.|+
T Consensus 462 Ip~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~ 508 (675)
T PHA02653 462 IRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYV 508 (675)
T ss_pred ccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEE
Confidence 99999999999 565 788999999999999 789886
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.98 E-value=4.5e-31 Score=264.51 Aligned_cols=199 Identities=21% Similarity=0.253 Sum_probs=137.3
Q ss_pred CCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEecccccccc--CCCchHHHHhHHHHHhhCC-CCCEEEEeecCC
Q psy4493 107 SSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSW--GHDFRPDYQYLSILKTMFP-DVPILGLTATAT 183 (323)
Q Consensus 107 ~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~--~~~~r~~~~~l~~l~~~~~-~~~~i~lSAT~~ 183 (323)
..++|+|+||++|.. .+.. +....++++++|||||+|.+.+. |..+...+.+ +....+ +.|+|++|||++
T Consensus 98 ~ppdILVTTPEsL~~--LLts--k~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeR---L~~l~~~~~QrIgLSATI~ 170 (1490)
T PRK09751 98 NPPDILITTPESLYL--MLTS--RARETLRGVETVIIDEVHAVAGSKRGAHLALSLER---LDALLHTSAQRIGLSATVR 170 (1490)
T ss_pred CCCCEEEecHHHHHH--HHhh--hhhhhhccCCEEEEecHHHhcccccccHHHHHHHH---HHHhCCCCCeEEEEEeeCC
Confidence 468999999999963 1111 11234679999999999999853 4333444444 444443 689999999999
Q ss_pred hhHHHHHHHHhCCCCcE-EEecCCCCC-CceeEEEecCCc------------------hhHHHHHH-HHHHHhhcCCCcE
Q psy4493 184 TKVMLDVQKMLQIEDCV-VIKAPFNRP-NLFYEVRIKPAA------------------QKDCLDEL-ADLMSRRFRNQSG 242 (323)
Q Consensus 184 ~~~~~~i~~~l~~~~~~-~~~~~~~~~-~~~~~~~~~~~~------------------~~~~~~~l-~~~l~~~~~~~~~ 242 (323)
+ .+++.++|+..++. ++..+..++ ++.+.+ +.... .......+ ..++.....+.++
T Consensus 171 n--~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~v-p~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~~~~st 247 (1490)
T PRK09751 171 S--ASDVAAFLGGDRPVTVVNPPAMRHPQIRIVV-PVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRST 247 (1490)
T ss_pred C--HHHHHHHhcCCCCEEEECCCCCcccceEEEE-ecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHhcCCCE
Confidence 8 35778898765443 443322222 222222 11110 00000111 1122222256899
Q ss_pred EEEeCChhHHHHHHHHHHhCC---------------------------------CeEEeecCCCCCCc------------
Q psy4493 243 IIYTTSIKECEDLREELRNRG---------------------------------LRVSAYHAKLESNV------------ 277 (323)
Q Consensus 243 iVF~~s~~~~~~l~~~L~~~~---------------------------------~~v~~~h~~~~~~~------------ 277 (323)
||||||++.|+.++..|++.. ..+..|||++++++
T Consensus 248 LVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~ 327 (1490)
T PRK09751 248 IVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGE 327 (1490)
T ss_pred EEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCC
Confidence 999999999999999997631 12578999999998
Q ss_pred ------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCC
Q psy4493 278 ------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLG 315 (323)
Q Consensus 278 ------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~ 315 (323)
|+++++|||+++|++||+++.|.++.+|+||+||+||.
T Consensus 328 LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 328 LRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred ceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999996
No 54
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.97 E-value=3.4e-31 Score=235.30 Aligned_cols=282 Identities=21% Similarity=0.278 Sum_probs=208.0
Q ss_pred cHHHHHHHHHhcCCCCCChhHHHHHHHHh-cCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhc-CCcE
Q psy4493 8 SDRVRSVLKSKFNLTDFRPNQLAAINIAL-LKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL-KKDA 85 (323)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~-~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~-~~~~ 85 (323)
.++.+. +-+.-|++.+.|.|.-++++-+ .|++.+++++|++|||- +.-| ..|+.++. |+..
T Consensus 202 pe~fk~-~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTL--IgEl--------------AGi~~~l~~g~Km 264 (830)
T COG1202 202 PEKFKR-MLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTL--IGEL--------------AGIPRLLSGGKKM 264 (830)
T ss_pred cHHHHH-HHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcch--HHHh--------------hCcHHHHhCCCeE
Confidence 444444 4445689999999999998875 58999999999999992 2222 23555666 7889
Q ss_pred EEEccchh-----------hhhhcCee--e---------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCC
Q psy4493 86 IIIMPTGK-----------LLKKKKIC--L---------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGC 137 (323)
Q Consensus 86 lv~~pTgs-----------~l~~~~i~--l---------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~ 137 (323)
+.++|--+ ....+|.. + .....++||||+|-+-+-. .++.....++
T Consensus 265 lfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~------lLRtg~~lgd 338 (830)
T COG1202 265 LFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDY------LLRTGKDLGD 338 (830)
T ss_pred EEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHH------HHHcCCcccc
Confidence 99999988 23333333 1 2345689999999887753 5555567789
Q ss_pred cceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEe
Q psy4493 138 LARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRI 217 (323)
Q Consensus 138 v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 217 (323)
++.|||||+|.+.+..++.|.+ ..+..++.++|..|+|++|||..+. ..+.+.|+..- +.++. .+-++..-+..
T Consensus 339 iGtVVIDEiHtL~deERG~RLd-GLI~RLr~l~~~AQ~i~LSATVgNp--~elA~~l~a~l-V~y~~--RPVplErHlvf 412 (830)
T COG1202 339 IGTVVIDEIHTLEDEERGPRLD-GLIGRLRYLFPGAQFIYLSATVGNP--EELAKKLGAKL-VLYDE--RPVPLERHLVF 412 (830)
T ss_pred cceEEeeeeeeccchhcccchh-hHHHHHHHhCCCCeEEEEEeecCCh--HHHHHHhCCee-EeecC--CCCChhHeeee
Confidence 9999999999998755566654 4578899999999999999999885 35678877653 22222 22223222222
Q ss_pred cCCchhHHHHHHHHHHHhh-------cCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc-------------
Q psy4493 218 KPAAQKDCLDELADLMSRR-------FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------- 277 (323)
Q Consensus 218 ~~~~~~~~~~~l~~~l~~~-------~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------- 277 (323)
. ....+|.+.+..+.+.. .-.+++|||++|++.|..++..|..+|+++..||+||+..+
T Consensus 413 ~-~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l 491 (830)
T COG1202 413 A-RNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQEL 491 (830)
T ss_pred e-cCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCc
Confidence 2 22345666666666532 23579999999999999999999999999999999999988
Q ss_pred -----ceeeecccccCCccEEEEccC----CC-CHhHHHHHhccCCCCCCCCC
Q psy4493 278 -----SIAFGLGIDKPNVRFVIHHCL----SK-SMENFYQVSIAFGLGKHSFR 320 (323)
Q Consensus 278 -----T~~~~~Gid~~~v~~Vi~~~~----p~-~~~~~~qr~GR~gR~g~~g~ 320 (323)
|.+++.|+||| .+.||.-.+ -| |+.+|.||.|||||.+-.-+
T Consensus 492 ~~VVTTAAL~AGVDFP-ASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdr 543 (830)
T COG1202 492 AAVVTTAALAAGVDFP-ASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDR 543 (830)
T ss_pred ceEeehhhhhcCCCCc-hHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccC
Confidence 89999999999 677775333 23 89999999999999885543
No 55
>KOG0337|consensus
Probab=99.97 E-value=3.9e-32 Score=233.07 Aligned_cols=276 Identities=16% Similarity=0.167 Sum_probs=209.2
Q ss_pred cCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHh----cCCcEEEEccchh-
Q psy4493 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIAL----LKKDAIIIMPTGK- 93 (323)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~----~~~~~lv~~pTgs- 93 (323)
.++..+.|.|++.++.++.+++++-.+.||+|||.+..- .++..+. .|-..+++.||..
T Consensus 39 kg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~i----------------pm~e~Lk~~s~~g~RalilsptreL 102 (529)
T KOG0337|consen 39 KGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLI----------------PMIEKLKSHSQTGLRALILSPTREL 102 (529)
T ss_pred hhcCCCCchhcccccceeeccccceeeecCCcchhhHHH----------------HHHHHHhhccccccceeeccCcHHH
Confidence 367788999999999999999999999999999976322 1222222 2346899999998
Q ss_pred ------hhhhcC--eee---------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEecccccc
Q psy4493 94 ------LLKKKK--ICL---------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCS 150 (323)
Q Consensus 94 ------~l~~~~--i~l---------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~ 150 (323)
.++..| ..+ .....++|+|++||++++.. ..+....++.|.|||+|||+.+.
T Consensus 103 a~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~-----~vem~l~l~sveyVVfdEadrlf 177 (529)
T KOG0337|consen 103 ALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHL-----GVEMTLTLSSVEYVVFDEADRLF 177 (529)
T ss_pred HHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeee-----ehheeccccceeeeeehhhhHHH
Confidence 222222 221 33455789999999999742 11112344688999999999999
Q ss_pred ccCCCchHHHHhHHHHHhhCC-CCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCC-CCCceeEEEecCCchhHHHHH
Q psy4493 151 SWGHDFRPDYQYLSILKTMFP-DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFN-RPNLFYEVRIKPAAQKDCLDE 228 (323)
Q Consensus 151 ~~~~~~r~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 228 (323)
+.| |.++... +....| +.|.++||||+++.+.+. ..-|+.+|..+....+ +-+....+........++...
T Consensus 178 emg--fqeql~e---~l~rl~~~~QTllfSatlp~~lv~f--akaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aa 250 (529)
T KOG0337|consen 178 EMG--FQEQLHE---ILSRLPESRQTLLFSATLPRDLVDF--AKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAA 250 (529)
T ss_pred hhh--hHHHHHH---HHHhCCCcceEEEEeccCchhhHHH--HHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHH
Confidence 865 7776444 444445 779999999999887553 3346777776663221 111122222333446778889
Q ss_pred HHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeeecccccCCc
Q psy4493 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNV 290 (323)
Q Consensus 229 l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~~Gid~~~v 290 (323)
|+.++.+...+.+++|||.|...++-+...|+..|+.+..++|.|++.. |++.+||+|+|-.
T Consensus 251 Ll~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~dipll 330 (529)
T KOG0337|consen 251 LLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLL 330 (529)
T ss_pred HHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccc
Confidence 9999887666779999999999999999999999999999999998887 9999999999999
Q ss_pred cEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 291 RFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 291 ~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+.|||||+|.+...|.||+||+.|+|+.|.+.
T Consensus 331 dnvinyd~p~~~klFvhRVgr~aragrtg~aY 362 (529)
T KOG0337|consen 331 DNVINYDFPPDDKLFVHRVGRVARAGRTGRAY 362 (529)
T ss_pred cccccccCCCCCceEEEEecchhhccccceEE
Confidence 99999999999999999999999999988753
No 56
>KOG0350|consensus
Probab=99.97 E-value=1.5e-31 Score=233.79 Aligned_cols=277 Identities=18% Similarity=0.178 Sum_probs=184.8
Q ss_pred HhcCCCCCChhHHHHHHHHh---------cCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC-----
Q psy4493 17 SKFNLTDFRPNQLAAINIAL---------LKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK----- 82 (323)
Q Consensus 17 ~~~~~~~~~~~Q~~~~~~~~---------~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~----- 82 (323)
...++..+=|.|..++..++ ..+|+.+.+|||+|||-+...-+ +. ++..
T Consensus 153 ~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPI----------------VQ-~L~~R~v~~ 215 (620)
T KOG0350|consen 153 VKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPI----------------VQ-LLSSRPVKR 215 (620)
T ss_pred HHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHH----------------HH-HHccCCccc
Confidence 34467788899988777663 36789999999999994322111 11 1222
Q ss_pred CcEEEEccchh-------hh----hhcCeee------------------eccCCCeeEEEEcccccccchhHHHHHHH--
Q psy4493 83 KDAIIIMPTGK-------LL----KKKKICL------------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-- 131 (323)
Q Consensus 83 ~~~lv~~pTgs-------~l----~~~~i~l------------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-- 131 (323)
-.++|++||.. .+ ..-|..+ .......+|+|+||++|.+ +++.
T Consensus 216 LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVD------Hl~~~k 289 (620)
T KOG0350|consen 216 LRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVD------HLNNTK 289 (620)
T ss_pred eEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHH------hccCCC
Confidence 24799999988 11 1122221 2333466999999999986 6664
Q ss_pred HHhhCCcceEEEeccccccccCCCchHHH----------------------------HhHHHHHhh----CCCCCEEEEe
Q psy4493 132 MYKAGCLARIAIDEVHCCSSWGHDFRPDY----------------------------QYLSILKTM----FPDVPILGLT 179 (323)
Q Consensus 132 ~~~~~~v~~vVvDEah~~~~~~~~~r~~~----------------------------~~l~~l~~~----~~~~~~i~lS 179 (323)
.+.+++++++||||||++++.. |..-. ..+..+... ++....+.+|
T Consensus 290 ~f~Lk~LrfLVIDEADRll~qs--fQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~s 367 (620)
T KOG0350|consen 290 SFDLKHLRFLVIDEADRLLDQS--FQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFS 367 (620)
T ss_pred CcchhhceEEEechHHHHHHHH--HHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcc
Confidence 5677899999999999987521 21100 001122222 2344577889
Q ss_pred ecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEE------EecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHH
Q psy4493 180 ATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEV------RIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECE 253 (323)
Q Consensus 180 AT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~ 253 (323)
||++....+ ...|.+..|..+.+... ....|.+ .........+.-.++.++.. .+..++|+|++|...+.
T Consensus 368 atLsqdP~K--l~~l~l~~Prl~~v~~~-~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~-~k~~r~lcf~~S~~sa~ 443 (620)
T KOG0350|consen 368 ATLSQDPSK--LKDLTLHIPRLFHVSKP-LIGRYSLPSSLSHRLVVTEPKFKPLAVYALITS-NKLNRTLCFVNSVSSAN 443 (620)
T ss_pred hhhhcChHH--HhhhhcCCCceEEeecc-cceeeecChhhhhceeecccccchHhHHHHHHH-hhcceEEEEecchHHHH
Confidence 998865533 23334444443333210 0011111 11112223345566677763 36789999999999999
Q ss_pred HHHHHHH----hCCCeEEeecCCCCCCc------------------ceeeecccccCCccEEEEccCCCCHhHHHHHhcc
Q psy4493 254 DLREELR----NRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIA 311 (323)
Q Consensus 254 ~l~~~L~----~~~~~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR 311 (323)
.++..|. +.+.++..|.|+++... +|+++||+|+.+|+.|||||+|.+...|+||+||
T Consensus 444 Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GR 523 (620)
T KOG0350|consen 444 RLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGR 523 (620)
T ss_pred HHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcc
Confidence 9999887 23566777888888776 9999999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q psy4493 312 FGLGKHSFRSR 322 (323)
Q Consensus 312 ~gR~g~~g~~~ 322 (323)
++|+|+.|.|+
T Consensus 524 TARAgq~G~a~ 534 (620)
T KOG0350|consen 524 TARAGQDGYAI 534 (620)
T ss_pred cccccCCceEE
Confidence 99999999886
No 57
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=2e-29 Score=225.50 Aligned_cols=263 Identities=17% Similarity=0.155 Sum_probs=166.8
Q ss_pred hHHHHHHHHhcCCC--eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-----------
Q psy4493 27 NQLAAINIALLKKD--AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----------- 93 (323)
Q Consensus 27 ~Q~~~~~~~~~~~~--~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs----------- 93 (323)
+|.++++++..+++ +++.+|||+|||......+.. .+..+++++||.+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~-------------------~~~~~~~~~P~~aL~~~~~~~~~~ 61 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH-------------------GENDTIALYPTNALIEDQTEAIKE 61 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH-------------------cCCCEEEEeChHHHHHHHHHHHHH
Confidence 58899999998875 677899999999764433221 2234566666666
Q ss_pred hhhh----cCeee---------------------------------eccCCCeeEEEEcccccccchhHHHHHHH-----
Q psy4493 94 LLKK----KKICL---------------------------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK----- 131 (323)
Q Consensus 94 ~l~~----~~i~l---------------------------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~----- 131 (323)
.+.. .++.+ ......+.+++++|+.+.. ..+.....
T Consensus 62 ~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~--llr~~~~~~~~~~ 139 (357)
T TIGR03158 62 FVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVY--LTRFAYIDRGDIA 139 (357)
T ss_pred HHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHH--HHhhhccCcccch
Confidence 1100 01110 0012357788899998853 11111000
Q ss_pred HHhhCCcceEEEeccccccccCCCchHHHHh-HHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCC----
Q psy4493 132 MYKAGCLARIAIDEVHCCSSWGHDFRPDYQY-LSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPF---- 206 (323)
Q Consensus 132 ~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~-l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---- 206 (323)
..+..+++++||||+|.+..++......+.. +..++......+++++|||+++...+.+...+....+.......
T Consensus 140 ~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~ 219 (357)
T TIGR03158 140 AGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQF 219 (357)
T ss_pred hhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCccccc
Confidence 1134689999999999988655433332222 22223222257999999999988777666553232222111111
Q ss_pred --------C------C---CCceeEEEecCCchhHHHHHHHHHHHh---hcCCCcEEEEeCChhHHHHHHHHHHhCC--C
Q psy4493 207 --------N------R---PNLFYEVRIKPAAQKDCLDELADLMSR---RFRNQSGIIYTTSIKECEDLREELRNRG--L 264 (323)
Q Consensus 207 --------~------~---~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~iVF~~s~~~~~~l~~~L~~~~--~ 264 (323)
. + +++...+......+...+..+.+.+.+ ..+++++||||||++.|+.+++.|++.+ +
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~ 299 (357)
T TIGR03158 220 PDNPELEADNKTQSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGD 299 (357)
T ss_pred CCChhhhccccccccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCc
Confidence 1 1 344444444332333333333333322 1256799999999999999999999864 5
Q ss_pred eEEeecCCCCCCc------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCC
Q psy4493 265 RVSAYHAKLESNV------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313 (323)
Q Consensus 265 ~v~~~h~~~~~~~------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~g 313 (323)
.+..+||.+++.+ |+++++|+|++++ .|| ++ |.+..+|+||+||+|
T Consensus 300 ~~~~l~g~~~~~~R~~~~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 300 DIGRITGFAPKKDRERAMQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred eEEeeecCCCHHHHHHhccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 7889999999877 9999999999976 666 45 899999999999997
No 58
>PRK09401 reverse gyrase; Reviewed
Probab=99.97 E-value=3.5e-30 Score=256.96 Aligned_cols=270 Identities=20% Similarity=0.205 Sum_probs=184.5
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEc
Q psy4493 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIM 89 (323)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~ 89 (323)
+..+.+++.+|. .+++.|..+++.++.++++++++|||+|||....-.+.. ...++..+++++
T Consensus 68 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~----------------l~~~g~~alIL~ 130 (1176)
T PRK09401 68 EFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLY----------------LAKKGKKSYIIF 130 (1176)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHH----------------HHhcCCeEEEEe
Confidence 455677777777 789999999999999999999999999999542221111 112567899999
Q ss_pred cchh-------hhhhc----Cee---ee----------------ccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcc
Q psy4493 90 PTGK-------LLKKK----KIC---LM----------------TESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLA 139 (323)
Q Consensus 90 pTgs-------~l~~~----~i~---l~----------------~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~ 139 (323)
||.+ .+... ++. +. ...+.++|+|+||++|.+ .+. .....+++
T Consensus 131 PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~------~~~-~l~~~~~~ 203 (1176)
T PRK09401 131 PTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSK------NFD-ELPKKKFD 203 (1176)
T ss_pred ccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHH------HHH-hccccccC
Confidence 9999 22222 222 10 013568999999999974 233 22334699
Q ss_pred eEEEeccccccccCCC---------ch-HH-----------------HHhHHHHHhhC-----CCCCEEEEeecCChh-H
Q psy4493 140 RIAIDEVHCCSSWGHD---------FR-PD-----------------YQYLSILKTMF-----PDVPILGLTATATTK-V 186 (323)
Q Consensus 140 ~vVvDEah~~~~~~~~---------~r-~~-----------------~~~l~~l~~~~-----~~~~~i~lSAT~~~~-~ 186 (323)
++||||||++++|+++ |. .+ +..+..+.... ...|++++|||.++. .
T Consensus 204 ~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~ 283 (1176)
T PRK09401 204 FVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGN 283 (1176)
T ss_pred EEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccch
Confidence 9999999999986543 43 12 22222222221 157899999999875 3
Q ss_pred HHH-HHHHhCCCCcEEEecCCCCCCceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhH---HHHHHHHHHhC
Q psy4493 187 MLD-VQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKE---CEDLREELRNR 262 (323)
Q Consensus 187 ~~~-i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~---~~~l~~~L~~~ 262 (323)
... +...+++ .+-.......++...+.... ++...+.++++. -+.++||||++++. |+++++.|+..
T Consensus 284 ~~~l~~~ll~~---~v~~~~~~~rnI~~~yi~~~----~k~~~L~~ll~~--l~~~~LIFv~t~~~~~~ae~l~~~L~~~ 354 (1176)
T PRK09401 284 RVKLFRELLGF---EVGSPVFYLRNIVDSYIVDE----DSVEKLVELVKR--LGDGGLIFVPSDKGKEYAEELAEYLEDL 354 (1176)
T ss_pred HHHHhhccceE---EecCcccccCCceEEEEEcc----cHHHHHHHHHHh--cCCCEEEEEecccChHHHHHHHHHHHHC
Confidence 221 1222221 11111122334433333222 355667777764 24689999999887 99999999999
Q ss_pred CCeEEeecCCCCCCc------------------ceeeecccccCC-ccEEEEccCCC------CHhHHHHHhccCC
Q psy4493 263 GLRVSAYHAKLESNV------------------SIAFGLGIDKPN-VRFVIHHCLSK------SMENFYQVSIAFG 313 (323)
Q Consensus 263 ~~~v~~~h~~~~~~~------------------T~~~~~Gid~~~-v~~Vi~~~~p~------~~~~~~qr~GR~g 313 (323)
|+++..+||++ ... |++++||+|+|+ |++|||||+|+ ....|.||+||+.
T Consensus 355 gi~v~~~hg~l-~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 355 GINAELAISGF-ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred CCcEEEEeCcH-HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 99999999998 222 589999999999 89999999998 5567999999985
No 59
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=1.5e-29 Score=244.67 Aligned_cols=259 Identities=15% Similarity=0.099 Sum_probs=176.4
Q ss_pred HHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------hhh-hcCee
Q psy4493 30 AAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------LLK-KKKIC 101 (323)
Q Consensus 30 ~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------~l~-~~~i~ 101 (323)
+.++.+..++++++.++||+|||..+...+.+. ...+..+++..||.. .+. ..+..
T Consensus 9 ~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~----------------~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~ 72 (819)
T TIGR01970 9 ALRDALAAHPQVVLEAPPGAGKSTAVPLALLDA----------------PGIGGKIIMLEPRRLAARSAAQRLASQLGEA 72 (819)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHh----------------hccCCeEEEEeCcHHHHHHHHHHHHHHhCCC
Confidence 455666678889999999999999988777542 113456999999987 221 22211
Q ss_pred --------e---eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEecccc-ccccCCCchHHHHhHHHHHh-
Q psy4493 102 --------L---MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHC-CSSWGHDFRPDYQYLSILKT- 168 (323)
Q Consensus 102 --------l---~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~-~~~~~~~~r~~~~~l~~l~~- 168 (323)
+ .....+.+|+|+||++|++ .+.......++++|||||+|. ..+. ++-..+ +..+..
T Consensus 73 ~g~~VGy~vr~~~~~s~~t~I~v~T~G~Llr------~l~~d~~L~~v~~VIiDEaHER~L~~--Dl~L~l--l~~i~~~ 142 (819)
T TIGR01970 73 VGQTVGYRVRGENKVSRRTRLEVVTEGILTR------MIQDDPELDGVGALIFDEFHERSLDA--DLGLAL--ALDVQSS 142 (819)
T ss_pred cCcEEEEEEccccccCCCCcEEEECCcHHHH------HHhhCcccccCCEEEEeccchhhhcc--chHHHH--HHHHHHh
Confidence 1 2233457999999999975 344334567899999999995 3331 222211 223333
Q ss_pred hCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecCCch--hH-HHHHHHHHHHhhcCCCcEEEE
Q psy4493 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQ--KD-CLDELADLMSRRFRNQSGIIY 245 (323)
Q Consensus 169 ~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~l~~~l~~~~~~~~~iVF 245 (323)
..++.++++||||++.+. +.++++- +.++.......++...+....... .. ....+...+.. ..+++|||
T Consensus 143 lr~dlqlIlmSATl~~~~---l~~~l~~--~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVF 215 (819)
T TIGR01970 143 LREDLKILAMSATLDGER---LSSLLPD--APVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVF 215 (819)
T ss_pred cCCCceEEEEeCCCCHHH---HHHHcCC--CcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEE
Confidence 335789999999999754 3555542 223332221112222222222111 11 12234444433 46789999
Q ss_pred eCChhHHHHHHHHHHh---CCCeEEeecCCCCCCc------------------ceeeecccccCCccEEEEccCCC----
Q psy4493 246 TTSIKECEDLREELRN---RGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSK---- 300 (323)
Q Consensus 246 ~~s~~~~~~l~~~L~~---~~~~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~p~---- 300 (323)
|+++++++.+++.|.+ .++.+..+||+|++++ |+++++|||+|+|++||++|+|+
T Consensus 216 lpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~y 295 (819)
T TIGR01970 216 LPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARF 295 (819)
T ss_pred ECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccccc
Confidence 9999999999999987 4789999999999876 99999999999999999999885
Q ss_pred --------------CHhHHHHHhccCCCCCCCCCCC
Q psy4493 301 --------------SMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 301 --------------~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|..+|.||+||+||. ++|.|+
T Consensus 296 d~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cy 330 (819)
T TIGR01970 296 DPKTGITRLETVRISQASATQRAGRAGRL-EPGVCY 330 (819)
T ss_pred ccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEE
Confidence 345699999999999 889886
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=3.1e-30 Score=232.53 Aligned_cols=258 Identities=15% Similarity=0.092 Sum_probs=155.0
Q ss_pred CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------hhhhc-Cee--e-------
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------LLKKK-KIC--L------- 102 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------~l~~~-~i~--l------- 102 (323)
++++.+|||+|||......+... +. -..+..+++++||.+ .+... +.. +
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~-------------~~-~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~ 66 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHS-------------IK-SQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSF 66 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHH-------------Hh-hCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHH
Confidence 47899999999998765554321 10 012356899999998 22221 211 0
Q ss_pred ------------------e-c---cCCCeeEEEEcccccccchhHHHHH--HHHHhhCCcceEEEeccccccccCCCchH
Q psy4493 103 ------------------M-T---ESSSLKLLYVSPEKLAKSKSFMTKL--QKMYKAGCLARIAIDEVHCCSSWGHDFRP 158 (323)
Q Consensus 103 ------------------~-~---~~~~~~vii~Tp~~l~~~~~~~~~l--~~~~~~~~v~~vVvDEah~~~~~~~~~r~ 158 (323)
. . .....+++++||+++... .+...- ......-..+++|+||||.+.+++ +..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~-~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~--~~~ 143 (358)
T TIGR01587 67 KRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKS-VFGEFGHYEFTLASIANSLLIFDEVHFYDEYT--LAL 143 (358)
T ss_pred HHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHH-HhcccchHHHHHHHhcCCEEEEeCCCCCCHHH--HHH
Confidence 0 0 012467999999998641 111000 001111134799999999998743 212
Q ss_pred HHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecCCchhHHHHHHHHHHHhhcC
Q psy4493 159 DYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFR 238 (323)
Q Consensus 159 ~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 238 (323)
....+..+. ..+.|+++||||+++...+.+...........+............+.........+...+.+++.....
T Consensus 144 l~~~l~~l~--~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 221 (358)
T TIGR01587 144 ILAVLEVLK--DNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKK 221 (358)
T ss_pred HHHHHHHHH--HcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhC
Confidence 111122222 237899999999996553332222111111111111000001111111111112233444444443336
Q ss_pred CCcEEEEeCChhHHHHHHHHHHhCCC--eEEeecCCCCCCc----------------------ceeeecccccCCccEEE
Q psy4493 239 NQSGIIYTTSIKECEDLREELRNRGL--RVSAYHAKLESNV----------------------SIAFGLGIDKPNVRFVI 294 (323)
Q Consensus 239 ~~~~iVF~~s~~~~~~l~~~L~~~~~--~v~~~h~~~~~~~----------------------T~~~~~Gid~~~v~~Vi 294 (323)
++++||||+|+++|+.+++.|++.+. .+..+||++++.+ |+++++|+|++ ++.||
T Consensus 222 ~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi 300 (358)
T TIGR01587 222 GGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMI 300 (358)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEE
Confidence 78999999999999999999988765 5999999998754 99999999996 89999
Q ss_pred EccCCCCHhHHHHHhccCCCCCCCC
Q psy4493 295 HHCLSKSMENFYQVSIAFGLGKHSF 319 (323)
Q Consensus 295 ~~~~p~~~~~~~qr~GR~gR~g~~g 319 (323)
++..| ..+|+||+||+||.|+.+
T Consensus 301 ~~~~~--~~~~iqr~GR~gR~g~~~ 323 (358)
T TIGR01587 301 TELAP--IDSLIQRLGRLHRYGRKN 323 (358)
T ss_pred EcCCC--HHHHHHHhccccCCCCCC
Confidence 98766 679999999999998764
No 61
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.97 E-value=3e-29 Score=238.95 Aligned_cols=285 Identities=12% Similarity=0.046 Sum_probs=179.1
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHhcCC-CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEE
Q psy4493 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKK-DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAII 87 (323)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~-~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv 87 (323)
.++.+.+++..|++ +.|+|.++++.++.|+ ++++.+|||+|||..+...+.. . ... -...+.+++
T Consensus 2 ~~f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~---~----~~~------~~~~~rLv~ 67 (844)
T TIGR02621 2 LKFDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLA---V----EIG------AKVPRRLVY 67 (844)
T ss_pred chHHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcc---c----ccc------ccccceEEE
Confidence 35677888888888 9999999999999998 5666799999999754322211 0 000 001234666
Q ss_pred Eccchh----------hhhh-c-----------------------Cee---e----------eccCCCeeEEEEcccccc
Q psy4493 88 IMPTGK----------LLKK-K-----------------------KIC---L----------MTESSSLKLLYVSPEKLA 120 (323)
Q Consensus 88 ~~pTgs----------~l~~-~-----------------------~i~---l----------~~~~~~~~vii~Tp~~l~ 120 (323)
++||+. .+.+ . ++. + ......++|+|+|++.+.
T Consensus 68 ~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~ 147 (844)
T TIGR02621 68 VVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIG 147 (844)
T ss_pred eCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHc
Confidence 889998 1111 1 122 1 233456799999988775
Q ss_pred cchhHHH-----HH--HHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCC---CCCEEEEeecCChhHHHHH
Q psy4493 121 KSKSFMT-----KL--QKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP---DVPILGLTATATTKVMLDV 190 (323)
Q Consensus 121 ~~~~~~~-----~l--~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~---~~~~i~lSAT~~~~~~~~i 190 (323)
....+.. .. -....+.+++++|+|||| ++. +|......|.......+ +.|+++||||++.+..+..
T Consensus 148 sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~--gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~ 223 (844)
T TIGR02621 148 SRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEP--AFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRT 223 (844)
T ss_pred CCccccccccccccccchhhhhccceEEEEehhh--hcc--ccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHH
Confidence 4211100 00 011235689999999999 332 48887766633221122 2689999999998765433
Q ss_pred HHHhCCCCcEEEecCC---CCCCceeEEEecCCchhHHHHHHHHHHHh--hcCCCcEEEEeCChhHHHHHHHHHHhCCCe
Q psy4493 191 QKMLQIEDCVVIKAPF---NRPNLFYEVRIKPAAQKDCLDELADLMSR--RFRNQSGIIYTTSIKECEDLREELRNRGLR 265 (323)
Q Consensus 191 ~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~ 265 (323)
..++ .. +..+.... ..+.+... .... .+.+...+...+.. ...++++||||||++.|+.+++.|.+.++
T Consensus 224 ~~~~-~~-p~~i~V~~~~l~a~ki~q~-v~v~--~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~- 297 (844)
T TIGR02621 224 TLLS-AE-DYKHPVLKKRLAAKKIVKL-VPPS--DEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF- 297 (844)
T ss_pred HHHc-cC-CceeecccccccccceEEE-EecC--hHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC-
Confidence 3332 22 22222211 11122211 1111 22233332222211 12568999999999999999999998876
Q ss_pred EEeecCCCCCC-----------------------------c-----ceeeecccccCCccEEEEccCCCCHhHHHHHhcc
Q psy4493 266 VSAYHAKLESN-----------------------------V-----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIA 311 (323)
Q Consensus 266 v~~~h~~~~~~-----------------------------~-----T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR 311 (323)
..+||+|++. . |+++++|+|++. ++||++..| ..+|+||+||
T Consensus 298 -~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGR 373 (844)
T TIGR02621 298 -ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGR 373 (844)
T ss_pred -eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcc
Confidence 7889886542 1 999999999985 899987766 5799999999
Q ss_pred CCCCCCCCCC
Q psy4493 312 FGLGKHSFRS 321 (323)
Q Consensus 312 ~gR~g~~g~~ 321 (323)
+||.|+.|.+
T Consensus 374 tgR~G~~~~~ 383 (844)
T TIGR02621 374 VNRFGELQAC 383 (844)
T ss_pred cCCCCCCCCc
Confidence 9999987544
No 62
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.97 E-value=1.9e-29 Score=235.40 Aligned_cols=263 Identities=14% Similarity=0.067 Sum_probs=173.7
Q ss_pred CCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCC-cEEEEccchh------
Q psy4493 21 LTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKK-DAIIIMPTGK------ 93 (323)
Q Consensus 21 ~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~-~~lv~~pTgs------ 93 (323)
...+|+.|.+++..++.+++.++.+|||+|||.......+. .+..++ .+++++||..
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~----------------~~~~~~~~vLilvpt~eL~~Q~~ 175 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRY----------------YLENYEGKVLIIVPTTSLVTQMI 175 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH----------------HHhcCCCeEEEEECcHHHHHHHH
Confidence 35799999999999999999999999999999654332211 011334 7999999999
Q ss_pred -hhhhcCe----e---e---eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHh
Q psy4493 94 -LLKKKKI----C---L---MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQY 162 (323)
Q Consensus 94 -~l~~~~i----~---l---~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~ 162 (323)
.+.+.+. . + .......+|+|+||+++.+. ... ...++++||+||||++... ++
T Consensus 176 ~~l~~~~~~~~~~~~~i~~g~~~~~~~~I~VaT~qsl~~~------~~~--~~~~~~~iIvDEaH~~~~~--~~------ 239 (501)
T PHA02558 176 DDFVDYRLFPREAMHKIYSGTAKDTDAPIVVSTWQSAVKQ------PKE--WFDQFGMVIVDECHLFTGK--SL------ 239 (501)
T ss_pred HHHHHhccccccceeEEecCcccCCCCCEEEeeHHHHhhc------hhh--hccccCEEEEEchhcccch--hH------
Confidence 3333221 1 1 12224578999999998741 111 2358999999999998651 22
Q ss_pred HHHHHhhCC-CCCEEEEeecCChhHHHH--HHHHhCCCCcEEEecCC-------CCCCceeEEEec--C-----------
Q psy4493 163 LSILKTMFP-DVPILGLTATATTKVMLD--VQKMLQIEDCVVIKAPF-------NRPNLFYEVRIK--P----------- 219 (323)
Q Consensus 163 l~~l~~~~~-~~~~i~lSAT~~~~~~~~--i~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~--~----------- 219 (323)
..+....+ ..++++||||+....... +...+| +.....+. ......+..... +
T Consensus 240 -~~il~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG---~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~ 315 (501)
T PHA02558 240 -TSIITKLDNCKFKFGLTGSLRDGKANILQYVGLFG---DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGED 315 (501)
T ss_pred -HHHHHhhhccceEEEEeccCCCccccHHHHHHhhC---CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccc
Confidence 22333333 557999999997543211 122222 11111100 000000000000 0
Q ss_pred --------CchhHHHHHHHHHHHhh-cCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc-------------
Q psy4493 220 --------AAQKDCLDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------- 277 (323)
Q Consensus 220 --------~~~~~~~~~l~~~l~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------- 277 (323)
.....+-..+.+.+... ..+.+++|||+++++|+.+++.|++.|.++..+||+++.++
T Consensus 316 ~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~ 395 (501)
T PHA02558 316 YQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKG 395 (501)
T ss_pred hHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCC
Confidence 00011122233333211 25678999999999999999999999999999999999887
Q ss_pred -----c-eeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCC
Q psy4493 278 -----S-IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSF 319 (323)
Q Consensus 278 -----T-~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g 319 (323)
| +++++|+|+|++++||+++++.+...|+||+||++|.+..+
T Consensus 396 ~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 396 IIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred eEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 5 89999999999999999999999999999999999987643
No 63
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.97 E-value=3.2e-29 Score=242.82 Aligned_cols=258 Identities=16% Similarity=0.130 Sum_probs=173.6
Q ss_pred HHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------hhh-hcCe-
Q psy4493 30 AAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------LLK-KKKI- 100 (323)
Q Consensus 30 ~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------~l~-~~~i- 100 (323)
+.++.+..++++++.+|||+|||..+...+.... ..+..++++.||.. .+. ..+.
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~----------------~~~~~ilvlqPrR~aA~qia~rva~~l~~~ 75 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHG----------------GINGKIIMLEPRRLAARNVAQRLAEQLGEK 75 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcC----------------CcCCeEEEECChHHHHHHHHHHHHHHhCcc
Confidence 3556666788999999999999998876654310 11236999999998 221 1222
Q ss_pred ---ee-------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHh-h
Q psy4493 101 ---CL-------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT-M 169 (323)
Q Consensus 101 ---~l-------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~-~ 169 (323)
.+ .......+|+|+||+++++ .+.....+.++++|||||+|...-.. ++.- ..+..++. .
T Consensus 76 ~g~~VGy~vr~~~~~~~~t~I~v~T~G~Llr------~l~~d~~L~~v~~IIlDEaHER~l~~-Dl~L--~ll~~i~~~l 146 (812)
T PRK11664 76 PGETVGYRMRAESKVGPNTRLEVVTEGILTR------MIQRDPELSGVGLVILDEFHERSLQA-DLAL--ALLLDVQQGL 146 (812)
T ss_pred cCceEEEEecCccccCCCCcEEEEChhHHHH------HHhhCCCcCcCcEEEEcCCCcccccc-chHH--HHHHHHHHhC
Confidence 11 1233456899999999974 34433356799999999999742111 1111 11222333 3
Q ss_pred CCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecCCchhHHH-----HHHHHHHHhhcCCCcEEE
Q psy4493 170 FPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCL-----DELADLMSRRFRNQSGII 244 (323)
Q Consensus 170 ~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~l~~~~~~~~~iV 244 (323)
.++.++++||||++.+. +.++++ ++.++.......++...+.... ..+++ ..+...+.. ..+.+||
T Consensus 147 r~~lqlilmSATl~~~~---l~~~~~--~~~~I~~~gr~~pV~~~y~~~~--~~~~~~~~v~~~l~~~l~~--~~g~iLV 217 (812)
T PRK11664 147 RDDLKLLIMSATLDNDR---LQQLLP--DAPVIVSEGRSFPVERRYQPLP--AHQRFDEAVARATAELLRQ--ESGSLLL 217 (812)
T ss_pred CccceEEEEecCCCHHH---HHHhcC--CCCEEEecCccccceEEeccCc--hhhhHHHHHHHHHHHHHHh--CCCCEEE
Confidence 35789999999998753 345543 2223332221112322222222 12222 234444443 4689999
Q ss_pred EeCChhHHHHHHHHHHh---CCCeEEeecCCCCCCc------------------ceeeecccccCCccEEEEccCCC---
Q psy4493 245 YTTSIKECEDLREELRN---RGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSK--- 300 (323)
Q Consensus 245 F~~s~~~~~~l~~~L~~---~~~~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~p~--- 300 (323)
||+++++++.+++.|.+ .++.+..+||+++.++ |+++++|+|+|+|++||++|+++
T Consensus 218 Flpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~ 297 (812)
T PRK11664 218 FLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVAR 297 (812)
T ss_pred EcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCccccc
Confidence 99999999999999987 5788999999999876 99999999999999999988875
Q ss_pred ---------------CHhHHHHHhccCCCCCCCCCCC
Q psy4493 301 ---------------SMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 301 ---------------~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|..+|+||+||+||. ++|.|+
T Consensus 298 yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cy 333 (812)
T PRK11664 298 FDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICL 333 (812)
T ss_pred ccccCCcceeEEEeechhhhhhhccccCCC-CCcEEE
Confidence 335899999999998 689886
No 64
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=5.7e-29 Score=219.10 Aligned_cols=274 Identities=19% Similarity=0.211 Sum_probs=186.7
Q ss_pred CCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------
Q psy4493 21 LTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK------- 93 (323)
Q Consensus 21 ~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs------- 93 (323)
.-.+|..|.......+.+ +.++++|||.|||....-.+.+.|.+ .++.++..|||..
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~---------------~~~kvlfLAPTKPLV~Qh~~ 76 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW---------------FGGKVLFLAPTKPLVLQHAE 76 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh---------------cCCeEEEecCCchHHHHHHH
Confidence 456788999988877755 78999999999997666655553322 2336999999998
Q ss_pred -hhhhcCee------e---------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCch
Q psy4493 94 -LLKKKKIC------L---------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFR 157 (323)
Q Consensus 94 -~l~~~~i~------l---------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r 157 (323)
..+..|++ | ...+...+|+|+||+.+.+ +++.......++.++|+||||+.... +
T Consensus 77 ~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveN-----Dl~~Grid~~dv~~lifDEAHRAvGn---y- 147 (542)
T COG1111 77 FCRKVTGIPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVEN-----DLKAGRIDLDDVSLLIFDEAHRAVGN---Y- 147 (542)
T ss_pred HHHHHhCCChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHh-----HHhcCccChHHceEEEechhhhccCc---c-
Confidence 22223443 2 3446778999999999974 35555667789999999999987542 2
Q ss_pred HHHHhHHH-HHhhCCCCCEEEEeecCChhH--HHHHHHHhCCCCcEEEec-CCC-CCCc---eeEEEe------------
Q psy4493 158 PDYQYLSI-LKTMFPDVPILGLTATATTKV--MLDVQKMLQIEDCVVIKA-PFN-RPNL---FYEVRI------------ 217 (323)
Q Consensus 158 ~~~~~l~~-l~~~~~~~~~i~lSAT~~~~~--~~~i~~~l~~~~~~~~~~-~~~-~~~~---~~~~~~------------ 217 (323)
.|-.+.. ....-.++.+++||||+.... ...+.+.||+.+.++-.. +.+ +|.+ ......
T Consensus 148 -AYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~ 226 (542)
T COG1111 148 -AYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRD 226 (542)
T ss_pred -hHHHHHHHHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHH
Confidence 2223332 323334778999999998654 356777888765332211 100 1110 000000
Q ss_pred --------------------cCC---------------------c-----------------------------------
Q psy4493 218 --------------------KPA---------------------A----------------------------------- 221 (323)
Q Consensus 218 --------------------~~~---------------------~----------------------------------- 221 (323)
..+ +
T Consensus 227 ~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl 306 (542)
T COG1111 227 LLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYL 306 (542)
T ss_pred HHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 000 0
Q ss_pred ---------------------------------------hhHHHHHHHHHHHhh---cCCCcEEEEeCChhHHHHHHHHH
Q psy4493 222 ---------------------------------------QKDCLDELADLMSRR---FRNQSGIIYTTSIKECEDLREEL 259 (323)
Q Consensus 222 ---------------------------------------~~~~~~~l~~~l~~~---~~~~~~iVF~~s~~~~~~l~~~L 259 (323)
..-|++.+.+++++. ..+.++|||++.+.+++.+..+|
T Consensus 307 ~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L 386 (542)
T COG1111 307 EKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFL 386 (542)
T ss_pred HHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHH
Confidence 001222233333322 24679999999999999999999
Q ss_pred HhCCCeEE-eec--------CCCCCCc------------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccC
Q psy4493 260 RNRGLRVS-AYH--------AKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAF 312 (323)
Q Consensus 260 ~~~~~~v~-~~h--------~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~ 312 (323)
.+.+.++. .|- .||++.+ |++.++|+|+|+|+.||+|++..|...++||.||+
T Consensus 387 ~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRT 466 (542)
T COG1111 387 KKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRT 466 (542)
T ss_pred HhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcc
Confidence 99988764 333 4688877 99999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy4493 313 GLGKHSFRS 321 (323)
Q Consensus 313 gR~g~~g~~ 321 (323)
||. +.|+.
T Consensus 467 GR~-r~Grv 474 (542)
T COG1111 467 GRK-RKGRV 474 (542)
T ss_pred ccC-CCCeE
Confidence 997 66753
No 65
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.96 E-value=8e-29 Score=237.35 Aligned_cols=274 Identities=18% Similarity=0.160 Sum_probs=185.9
Q ss_pred HHhcCCCCCChhHHHHHHHHh-cCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhc-CCcEEEEccchh
Q psy4493 16 KSKFNLTDFRPNQLAAINIAL-LKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL-KKDAIIIMPTGK 93 (323)
Q Consensus 16 ~~~~~~~~~~~~Q~~~~~~~~-~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~-~~~~lv~~pTgs 93 (323)
.+..++.++.+.|+.++.... .++++++.+|||+|||.....++.+ .+.+ +..++.++|+.+
T Consensus 24 ~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~----------------~l~~~~~k~vYivPlkA 87 (766)
T COG1204 24 LKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILS----------------TLLEGGGKVVYIVPLKA 87 (766)
T ss_pred hccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHH----------------HHHhcCCcEEEEeChHH
Confidence 334455566777888777665 4589999999999999665555433 3444 477999999999
Q ss_pred ----------hhhhcCeee----------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceEEEecccccccc
Q psy4493 94 ----------LLKKKKICL----------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARIAIDEVHCCSSW 152 (323)
Q Consensus 94 ----------~l~~~~i~l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~vVvDEah~~~~~ 152 (323)
.+...|+++ ......++|+|+|||++-. .+++ ......|++|||||+|.+.+.
T Consensus 88 La~Ek~~~~~~~~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Ds------l~R~~~~~~~~V~lvViDEiH~l~d~ 161 (766)
T COG1204 88 LAEEKYEEFSRLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDS------LTRKRPSWIEEVDLVVIDEIHLLGDR 161 (766)
T ss_pred HHHHHHHHhhhHHhcCCEEEEecCCcccchhhhccCCEEEEchHHhhH------hhhcCcchhhcccEEEEeeeeecCCc
Confidence 345778874 2234678899999999963 3333 234568999999999999863
Q ss_pred CCCchHHHH-hHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcE-EEec-CCCCCCc-eeEEEecC--C------
Q psy4493 153 GHDFRPDYQ-YLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCV-VIKA-PFNRPNL-FYEVRIKP--A------ 220 (323)
Q Consensus 153 ~~~~r~~~~-~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~-~~~~-~~~~~~~-~~~~~~~~--~------ 220 (323)
-++ +... -+...+...+.++++++|||+++ ..++..|++-.... .... +..++.. ...+.... .
T Consensus 162 ~RG--~~lE~iv~r~~~~~~~~rivgLSATlpN--~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~ 237 (766)
T COG1204 162 TRG--PVLESIVARMRRLNELIRIVGLSATLPN--AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLL 237 (766)
T ss_pred ccC--ceehhHHHHHHhhCcceEEEEEeeecCC--HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCcccccccc
Confidence 111 1111 13445555456899999999999 67889999876431 1111 1111111 11111111 1
Q ss_pred chhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhC---------------------C----------------
Q psy4493 221 AQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR---------------------G---------------- 263 (323)
Q Consensus 221 ~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~---------------------~---------------- 263 (323)
........+.+.+. .++++||||+|++.+...|..+.+. +
T Consensus 238 ~~~~~~~~v~~~~~---~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~ 314 (766)
T COG1204 238 IDNLALELVLESLA---EGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVL 314 (766)
T ss_pred chHHHHHHHHHHHh---cCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHH
Confidence 11222333333333 7899999999999999999999841 0
Q ss_pred CeEEeecCCCCCCc------------------ceeeecccccCCccEEEE-----cc-----CCCCHhHHHHHhccCCCC
Q psy4493 264 LRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIH-----HC-----LSKSMENFYQVSIAFGLG 315 (323)
Q Consensus 264 ~~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~-----~~-----~p~~~~~~~qr~GR~gR~ 315 (323)
..++++|++++.++ |.++++|+|.| ++.||. |+ .+.++.+++|+.|||||.
T Consensus 315 ~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLP-A~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRP 393 (766)
T COG1204 315 RGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLP-ARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRP 393 (766)
T ss_pred hCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCc-ceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCC
Confidence 12789999999988 99999999999 666665 44 455788999999999999
Q ss_pred CCCC
Q psy4493 316 KHSF 319 (323)
Q Consensus 316 g~~g 319 (323)
|=..
T Consensus 394 g~d~ 397 (766)
T COG1204 394 GYDD 397 (766)
T ss_pred CcCC
Confidence 8543
No 66
>KOG0344|consensus
Probab=99.96 E-value=9.4e-30 Score=227.19 Aligned_cols=277 Identities=18% Similarity=0.163 Sum_probs=197.3
Q ss_pred CCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHH-hc---CCcEEEEccchh--
Q psy4493 20 NLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIA-LL---KKDAIIIMPTGK-- 93 (323)
Q Consensus 20 ~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~-~~---~~~~lv~~pTgs-- 93 (323)
++.++.|.|..++...+.+++++..+|||+|||-....-+ -....... .+ |-..+|++||..
T Consensus 155 ~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pi------------l~~L~~~~~~~~~~gl~a~Il~ptreLa 222 (593)
T KOG0344|consen 155 GFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPI------------LQHLKDLSQEKHKVGLRALILSPTRELA 222 (593)
T ss_pred CCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHH------------HHHHHHhhcccCccceEEEEecchHHHH
Confidence 6788899999999999999999999999999983321111 11111111 11 234799999999
Q ss_pred -----hhhhcC----eee----------------eccCCCeeEEEEcccccccchhHHHHHHHH---HhhCCcceEEEec
Q psy4493 94 -----LLKKKK----ICL----------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKM---YKAGCLARIAIDE 145 (323)
Q Consensus 94 -----~l~~~~----i~l----------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~---~~~~~v~~vVvDE 145 (323)
....+. -.+ ......+++++.||.++.. .+... .....|.++|+||
T Consensus 223 ~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~------~~~~~~~~idl~~V~~lV~dE 296 (593)
T KOG0344|consen 223 AQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVG------LLGLGKLNIDLSKVEWLVVDE 296 (593)
T ss_pred HHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHH------HhcCCCccchhheeeeEeech
Confidence 111111 111 1223467999999999864 33331 3456899999999
Q ss_pred cccccccCCCchHHHHhHHHHHhhC--CCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCC---CCCceeEEEecCC
Q psy4493 146 VHCCSSWGHDFRPDYQYLSILKTMF--PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFN---RPNLFYEVRIKPA 220 (323)
Q Consensus 146 ah~~~~~~~~~r~~~~~l~~l~~~~--~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~ 220 (323)
||++++. ..|..+... +.... +++.+=+||||.+..+. +|.+.. +.+...+..+.. ...+......+..
T Consensus 297 aD~lfe~-~~f~~Qla~---I~sac~s~~i~~a~FSat~~~~VE-E~~~~i-~~~~~~vivg~~~sa~~~V~QelvF~gs 370 (593)
T KOG0344|consen 297 ADLLFEP-EFFVEQLAD---IYSACQSPDIRVALFSATISVYVE-EWAELI-KSDLKRVIVGLRNSANETVDQELVFCGS 370 (593)
T ss_pred HHhhhCh-hhHHHHHHH---HHHHhcCcchhhhhhhccccHHHH-HHHHHh-hccceeEEEecchhHhhhhhhhheeeec
Confidence 9999884 245555444 33332 47788889999998764 344332 333333322211 1223333333333
Q ss_pred chhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHH-HhCCCeEEeecCCCCCCc------------------ceee
Q psy4493 221 AQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREEL-RNRGLRVSAYHAKLESNV------------------SIAF 281 (323)
Q Consensus 221 ~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L-~~~~~~v~~~h~~~~~~~------------------T~~~ 281 (323)
...++-.+.+++.. .-..+++||+.+.++|.+|+..| .-.++++..+||+.++.+ |+++
T Consensus 371 -e~~K~lA~rq~v~~-g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll 448 (593)
T KOG0344|consen 371 -EKGKLLALRQLVAS-GFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLL 448 (593)
T ss_pred -chhHHHHHHHHHhc-cCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhh
Confidence 45577778888874 35689999999999999999999 567889999999999988 9999
Q ss_pred ecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 282 GLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 282 ~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+||+|+.+|++|||||+|.+..+|+||+||+||+|+.|.++
T Consensus 449 ~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Ai 489 (593)
T KOG0344|consen 449 ARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAI 489 (593)
T ss_pred hccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceE
Confidence 99999999999999999999999999999999999999886
No 67
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.96 E-value=5.1e-28 Score=238.87 Aligned_cols=261 Identities=16% Similarity=0.090 Sum_probs=167.0
Q ss_pred HHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-----------hhh---
Q psy4493 31 AINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-----------LLK--- 96 (323)
Q Consensus 31 ~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-----------~l~--- 96 (323)
.++.+..++.+++.++||+|||.++...+.. .|... ...+++.-|-.- .+.
T Consensus 82 Il~ai~~~~VviI~GeTGSGKTTqlPq~lle-~g~g~--------------~g~I~~TQPRRlAArsLA~RVA~El~~~l 146 (1294)
T PRK11131 82 ILEAIRDHQVVIVAGETGSGKTTQLPKICLE-LGRGV--------------KGLIGHTQPRRLAARTVANRIAEELETEL 146 (1294)
T ss_pred HHHHHHhCCeEEEECCCCCCHHHHHHHHHHH-cCCCC--------------CCceeeCCCcHHHHHHHHHHHHHHHhhhh
Confidence 4445445555667789999999988876654 22110 001222223211 010
Q ss_pred --hcCeee---eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEecccc-ccccCCCchHHHHhHHHHHhhC
Q psy4493 97 --KKKICL---MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHC-CSSWGHDFRPDYQYLSILKTMF 170 (323)
Q Consensus 97 --~~~i~l---~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~-~~~~~~~~r~~~~~l~~l~~~~ 170 (323)
..|..+ .....+.+|+|+||++|++ .+.....+.++++|||||||. ..+. +|... .+..+....
T Consensus 147 G~~VGY~vrf~~~~s~~t~I~v~TpG~LL~------~l~~d~~Ls~~~~IIIDEAHERsLn~--DfLLg--~Lk~lL~~r 216 (1294)
T PRK11131 147 GGCVGYKVRFNDQVSDNTMVKLMTDGILLA------EIQQDRLLMQYDTIIIDEAHERSLNI--DFILG--YLKELLPRR 216 (1294)
T ss_pred cceeceeecCccccCCCCCEEEEChHHHHH------HHhcCCccccCcEEEecCcccccccc--chHHH--HHHHhhhcC
Confidence 012221 2334568999999999985 333333467999999999995 5552 35432 233344444
Q ss_pred CCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecCCc----hhHHHHHHHHHHHh--hcCCCcEEE
Q psy4493 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAA----QKDCLDELADLMSR--RFRNQSGII 244 (323)
Q Consensus 171 ~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~--~~~~~~~iV 244 (323)
++.++|+||||++.+ .+.++++-. +. +..+....++...+.+.... ..+.+..+...+.. ....+.+||
T Consensus 217 pdlKvILmSATid~e---~fs~~F~~a-pv-I~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILV 291 (1294)
T PRK11131 217 PDLKVIITSATIDPE---RFSRHFNNA-PI-IEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILI 291 (1294)
T ss_pred CCceEEEeeCCCCHH---HHHHHcCCC-CE-EEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 578999999999853 455665432 22 33222222232222222111 23344444444331 125678999
Q ss_pred EeCChhHHHHHHHHHHhCCCe---EEeecCCCCCCc----------------ceeeecccccCCccEEEEccC-------
Q psy4493 245 YTTSIKECEDLREELRNRGLR---VSAYHAKLESNV----------------SIAFGLGIDKPNVRFVIHHCL------- 298 (323)
Q Consensus 245 F~~s~~~~~~l~~~L~~~~~~---v~~~h~~~~~~~----------------T~~~~~Gid~~~v~~Vi~~~~------- 298 (323)
||++..+++.+++.|.+.++. +..+||++++++ |+++++|+|+|+|++||++|.
T Consensus 292 FLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd 371 (1294)
T PRK11131 292 FMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYS 371 (1294)
T ss_pred EcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcccCCeeEEEeccHHhhccccCcceEEEECCCccccccc
Confidence 999999999999999987654 778999999876 999999999999999999873
Q ss_pred --------C---CCHhHHHHHhccCCCCCCCCCCC
Q psy4493 299 --------S---KSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 299 --------p---~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
| .|..+|.||+||+||. ++|.|+
T Consensus 372 ~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~ 405 (1294)
T PRK11131 372 YRTKVQRLPIEPISQASANQRKGRCGRV-SEGICI 405 (1294)
T ss_pred cccCcccCCeeecCHhhHhhhccccCCC-CCcEEE
Confidence 3 4567899999999999 789886
No 68
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.96 E-value=8.5e-28 Score=233.29 Aligned_cols=280 Identities=19% Similarity=0.199 Sum_probs=198.2
Q ss_pred CCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCc--EEEEccchh----
Q psy4493 20 NLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD--AIIIMPTGK---- 93 (323)
Q Consensus 20 ~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~--~lv~~pTgs---- 93 (323)
+...+..+|.++++.+.+|++++++.|||+|||++ ++..++..++++.. .|++-||.+
T Consensus 67 g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~----------------FllPIld~~l~~~~a~AL~lYPtnALa~D 130 (851)
T COG1205 67 GIERLYSHQVDALRLIREGRNVVVTTGTGSGKTES----------------FLLPILDHLLRDPSARALLLYPTNALAND 130 (851)
T ss_pred ccccccHHHHHHHHHHHCCCCEEEECCCCCchhHH----------------HHHHHHHHHhhCcCccEEEEechhhhHhh
Confidence 45559999999999999999999999999999988 44455666666654 599999999
Q ss_pred -------hhhhcC--eee-------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccc
Q psy4493 94 -------LLKKKK--ICL-------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 94 -------~l~~~~--i~l-------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~ 151 (323)
.+...+ +.. ....+.++|++++|++|.. ......-...+...++++|||||+|-...
T Consensus 131 Q~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~-~llr~~~~~~~~~~~Lk~lVvDElHtYrG 209 (851)
T COG1205 131 QAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHY-LLLRNHDAWLWLLRNLKYLVVDELHTYRG 209 (851)
T ss_pred HHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHH-HhccCcchHHHHHhcCcEEEEecceeccc
Confidence 222333 331 2346789999999999963 12222222334556799999999997753
Q ss_pred -cCCCchHHHHhHHHHHhhCC-CCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecC----------
Q psy4493 152 -WGHDFRPDYQYLSILKTMFP-DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKP---------- 219 (323)
Q Consensus 152 -~~~~~r~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------- 219 (323)
.|......+.+|..+.+..+ +.|+|+.|||+.+.. +...+.++..-...+..+..+....+.+...+
T Consensus 210 v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~-e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r 288 (851)
T COG1205 210 VQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPG-EFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIR 288 (851)
T ss_pred cchhHHHHHHHHHHHHHhccCCCceEEEEeccccChH-HHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcc
Confidence 33334444455555555544 789999999998754 33444444332222444444444444444333
Q ss_pred CchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHH----HHHHhCC----CeEEeecCCCCCCc--------------
Q psy4493 220 AAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLR----EELRNRG----LRVSAYHAKLESNV-------------- 277 (323)
Q Consensus 220 ~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~----~~L~~~~----~~v~~~h~~~~~~~-------------- 277 (323)
.+...-...+...+-. ++-++|+|+.+++.++.++ ..+...+ ..+..|++++..++
T Consensus 289 ~s~~~~~~~~~~~~~~--~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~ 366 (851)
T COG1205 289 RSALAELATLAALLVR--NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELL 366 (851)
T ss_pred cchHHHHHHHHHHHHH--cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCcc
Confidence 1122223333333322 7889999999999999997 4444455 56899999999998
Q ss_pred ----ceeeecccccCCccEEEEccCCC-CHhHHHHHhccCCCCCCCC
Q psy4493 278 ----SIAFGLGIDKPNVRFVIHHCLSK-SMENFYQVSIAFGLGKHSF 319 (323)
Q Consensus 278 ----T~~~~~Gid~~~v~~Vi~~~~p~-~~~~~~qr~GR~gR~g~~g 319 (323)
|++++.|+|+.+++.||.++.|. +..+++||+||+||.++.+
T Consensus 367 ~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~ 413 (851)
T COG1205 367 GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQES 413 (851)
T ss_pred EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCc
Confidence 99999999999999999999999 8999999999999999654
No 69
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.95 E-value=1.1e-26 Score=230.08 Aligned_cols=263 Identities=16% Similarity=0.094 Sum_probs=168.4
Q ss_pred HHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--------hhhhcCee-
Q psy4493 31 AINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--------LLKKKKIC- 101 (323)
Q Consensus 31 ~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--------~l~~~~i~- 101 (323)
.++.+..+..+++.++||+|||+++...+.. .|.. ....+++.-|-.- .-...|..
T Consensus 75 Il~~l~~~~vvii~g~TGSGKTTqlPq~lle-~~~~--------------~~~~I~~tQPRRlAA~svA~RvA~elg~~l 139 (1283)
T TIGR01967 75 IAEAIAENQVVIIAGETGSGKTTQLPKICLE-LGRG--------------SHGLIGHTQPRRLAARTVAQRIAEELGTPL 139 (1283)
T ss_pred HHHHHHhCceEEEeCCCCCCcHHHHHHHHHH-cCCC--------------CCceEecCCccHHHHHHHHHHHHHHhCCCc
Confidence 4444445566777889999999998877765 2210 0011222223222 11112222
Q ss_pred -------e---eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEecccc-ccccCCCchHHHHhHHHHHhhC
Q psy4493 102 -------L---MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHC-CSSWGHDFRPDYQYLSILKTMF 170 (323)
Q Consensus 102 -------l---~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~-~~~~~~~~r~~~~~l~~l~~~~ 170 (323)
+ .....+.+|.|+||+.|++ .+..-..+.++++|||||||. ..+. ++-.. .+..+....
T Consensus 140 G~~VGY~vR~~~~~s~~T~I~~~TdGiLLr------~l~~d~~L~~~~~IIIDEaHERsL~~--D~LL~--lLk~il~~r 209 (1283)
T TIGR01967 140 GEKVGYKVRFHDQVSSNTLVKLMTDGILLA------ETQQDRFLSRYDTIIIDEAHERSLNI--DFLLG--YLKQLLPRR 209 (1283)
T ss_pred ceEEeeEEcCCcccCCCceeeeccccHHHH------HhhhCcccccCcEEEEcCcchhhccc--hhHHH--HHHHHHhhC
Confidence 1 2334567899999999985 333323457899999999994 4442 23332 234444455
Q ss_pred CCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecCCc--hhHHHHHHHHHHHhh--cCCCcEEEEe
Q psy4493 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAA--QKDCLDELADLMSRR--FRNQSGIIYT 246 (323)
Q Consensus 171 ~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~--~~~~~~iVF~ 246 (323)
++.++|+||||++. +.+.++++-.....+.....+..+.|........ ..+....+...+... ...+.+|||+
T Consensus 210 pdLKlIlmSATld~---~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFL 286 (1283)
T TIGR01967 210 PDLKIIITSATIDP---ERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFL 286 (1283)
T ss_pred CCCeEEEEeCCcCH---HHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeC
Confidence 68899999999985 3456666433222222222222233322111110 123334444443321 1457999999
Q ss_pred CChhHHHHHHHHHHhCC---CeEEeecCCCCCCc----------------ceeeecccccCCccEEEEccCCC-------
Q psy4493 247 TSIKECEDLREELRNRG---LRVSAYHAKLESNV----------------SIAFGLGIDKPNVRFVIHHCLSK------- 300 (323)
Q Consensus 247 ~s~~~~~~l~~~L~~~~---~~v~~~h~~~~~~~----------------T~~~~~Gid~~~v~~Vi~~~~p~------- 300 (323)
++..+++.+++.|.+.+ +.+..+||+|++++ |+++++|+|+|+|++||++|+++
T Consensus 287 pg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~ 366 (1283)
T TIGR01967 287 PGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHSGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYR 366 (1283)
T ss_pred CCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCCCceEEEeccHHHhccccCCeeEEEeCCCccccccccc
Confidence 99999999999999764 46889999999876 99999999999999999999543
Q ss_pred -----------CHhHHHHHhccCCCCCCCCCCC
Q psy4493 301 -----------SMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 301 -----------~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|..+|.||.||+||.| +|.|+
T Consensus 367 ~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cy 398 (1283)
T TIGR01967 367 TKVQRLPIEPISQASANQRKGRCGRVA-PGICI 398 (1283)
T ss_pred cCccccCCccCCHHHHHHHhhhhCCCC-CceEE
Confidence 6679999999999998 89885
No 70
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.4e-26 Score=216.24 Aligned_cols=145 Identities=19% Similarity=0.151 Sum_probs=114.5
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEE-ecCCchhHHHHHHHHHHHhhc-CCCcEEEEeCChhH
Q psy4493 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVR-IKPAAQKDCLDELADLMSRRF-RNQSGIIYTTSIKE 251 (323)
Q Consensus 174 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~-~~~~~iVF~~s~~~ 251 (323)
++.+||||+... .+++.+.+++. + +..+.++|+...... .......+|...|.+.+.... .+.++||||+|++.
T Consensus 410 kl~GmTGTa~~~-~~El~~~y~l~-v--v~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~ 485 (656)
T PRK12898 410 RLAGMTGTAREV-AGELWSVYGLP-V--VRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAA 485 (656)
T ss_pred HHhcccCcChHH-HHHHHHHHCCC-e--EEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 356899998864 46777887775 2 333444444421111 111235668888888887532 46899999999999
Q ss_pred HHHHHHHHHhCCCeEEeecCCCCCCc----------------ceeeecccccC---Ccc-----EEEEccCCCCHhHHHH
Q psy4493 252 CEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLGIDKP---NVR-----FVIHHCLSKSMENFYQ 307 (323)
Q Consensus 252 ~~~l~~~L~~~~~~v~~~h~~~~~~~----------------T~~~~~Gid~~---~v~-----~Vi~~~~p~~~~~~~q 307 (323)
++.+++.|.+.|+++..+||++...+ |++++||+|++ +|. +||++++|.+...|+|
T Consensus 486 se~L~~~L~~~gi~~~~Lhg~~~~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~h 565 (656)
T PRK12898 486 SERLSALLREAGLPHQVLNAKQDAEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQ 565 (656)
T ss_pred HHHHHHHHHHCCCCEEEeeCCcHHHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHH
Confidence 99999999999999999999977666 99999999999 776 9999999999999999
Q ss_pred HhccCCCCCCCCCCC
Q psy4493 308 VSIAFGLGKHSFRSR 322 (323)
Q Consensus 308 r~GR~gR~g~~g~~~ 322 (323)
|+||+||.|++|.|+
T Consensus 566 r~GRTGRqG~~G~s~ 580 (656)
T PRK12898 566 LAGRCGRQGDPGSYE 580 (656)
T ss_pred hcccccCCCCCeEEE
Confidence 999999999999886
No 71
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=5.1e-26 Score=216.77 Aligned_cols=144 Identities=22% Similarity=0.187 Sum_probs=114.7
Q ss_pred EEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEe-cCCchhHHHHHHHHHHHhh-cCCCcEEEEeCChhHH
Q psy4493 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRI-KPAAQKDCLDELADLMSRR-FRNQSGIIYTTSIKEC 252 (323)
Q Consensus 175 ~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~-~~~~~~iVF~~s~~~~ 252 (323)
+.|||+|+..+ .+++.+.+++. ++..+.++|........ ......++...+.+.+... ..+.++||||+|++.+
T Consensus 366 l~GmTGTa~t~-~~e~~~~Y~l~---v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~s 441 (790)
T PRK09200 366 LSGMTGTAKTE-EKEFFEVYNME---VVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQS 441 (790)
T ss_pred HhccCCCChHH-HHHHHHHhCCc---EEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHH
Confidence 55777776443 34555555543 44556667766533221 1134567888888888642 4688999999999999
Q ss_pred HHHHHHHHhCCCeEEeecCCCCCCc----------------ceeeeccccc---CCcc-----EEEEccCCCCHhHHHHH
Q psy4493 253 EDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLGIDK---PNVR-----FVIHHCLSKSMENFYQV 308 (323)
Q Consensus 253 ~~l~~~L~~~~~~v~~~h~~~~~~~----------------T~~~~~Gid~---~~v~-----~Vi~~~~p~~~~~~~qr 308 (323)
+.+++.|.+.|+++..+||++.+.+ |++++||+|+ |+|. +||++++|.+...|+||
T Consensus 442 e~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr 521 (790)
T PRK09200 442 ETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKGAVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQL 521 (790)
T ss_pred HHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCCeEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHh
Confidence 9999999999999999999988776 9999999999 6998 99999999999999999
Q ss_pred hccCCCCCCCCCCC
Q psy4493 309 SIAFGLGKHSFRSR 322 (323)
Q Consensus 309 ~GR~gR~g~~g~~~ 322 (323)
+||+||.|++|.|+
T Consensus 522 ~GRtGR~G~~G~s~ 535 (790)
T PRK09200 522 RGRSGRQGDPGSSQ 535 (790)
T ss_pred hccccCCCCCeeEE
Confidence 99999999999876
No 72
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.94 E-value=6.5e-26 Score=226.80 Aligned_cols=255 Identities=18% Similarity=0.188 Sum_probs=165.6
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEcc
Q psy4493 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMP 90 (323)
Q Consensus 11 ~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~p 90 (323)
..+.+++..+. .+++.|..+++.++.++++++.+|||+|||....-.+.. ...++..+++++|
T Consensus 67 f~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~----------------l~~~g~~vLIL~P 129 (1171)
T TIGR01054 67 FEEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLF----------------LAKKGKRCYIILP 129 (1171)
T ss_pred HHHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHH----------------HHhcCCeEEEEeC
Confidence 44444554444 689999999999999999999999999999633221111 1124677999999
Q ss_pred chh-------hhh----hcCee---e-----------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcc
Q psy4493 91 TGK-------LLK----KKKIC---L-----------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLA 139 (323)
Q Consensus 91 Tgs-------~l~----~~~i~---l-----------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~ 139 (323)
|.. .+. ..++. + ....+.++|+|+||++|.+ .+.... .+++
T Consensus 130 TreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~------~~~~l~--~~~~ 201 (1171)
T TIGR01054 130 TTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSK------NYDELG--PKFD 201 (1171)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHH------HHHHhc--CCCC
Confidence 999 111 11221 1 0123468999999999864 233221 1799
Q ss_pred eEEEeccccccccCC---------CchHH-HHhH----------------H---HHHhhCC-CCC--EEEEeecC-ChhH
Q psy4493 140 RIAIDEVHCCSSWGH---------DFRPD-YQYL----------------S---ILKTMFP-DVP--ILGLTATA-TTKV 186 (323)
Q Consensus 140 ~vVvDEah~~~~~~~---------~~r~~-~~~l----------------~---~l~~~~~-~~~--~i~lSAT~-~~~~ 186 (323)
++||||||.+++++. +|.++ ...+ . .+....+ ..| ++++|||. +...
T Consensus 202 ~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~ 281 (1171)
T TIGR01054 202 FIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGK 281 (1171)
T ss_pred EEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCcccc
Confidence 999999999998652 35543 1111 1 1111222 334 56789995 4433
Q ss_pred HHHHHHHhCCCCcEEEec---CCCCCCceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCCh---hHHHHHHHHHH
Q psy4493 187 MLDVQKMLQIEDCVVIKA---PFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSI---KECEDLREELR 260 (323)
Q Consensus 187 ~~~i~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~---~~~~~l~~~L~ 260 (323)
...+. .+...+.. .....++...+..... +...+.++++. -+.++||||+|+ +.|+++++.|+
T Consensus 282 ~~~l~-----r~ll~~~v~~~~~~~r~I~~~~~~~~~----~~~~L~~ll~~--l~~~~IVFv~t~~~~~~a~~l~~~L~ 350 (1171)
T TIGR01054 282 RAKLF-----RELLGFEVGGGSDTLRNVVDVYVEDED----LKETLLEIVKK--LGTGGIVYVSIDYGKEKAEEIAEFLE 350 (1171)
T ss_pred HHHHc-----ccccceEecCccccccceEEEEEeccc----HHHHHHHHHHH--cCCCEEEEEeccccHHHHHHHHHHHH
Confidence 22111 11111222 1222333322222111 23456677764 346899999999 99999999999
Q ss_pred hCCCeEEeecCCCCCCc------------------ceeeecccccCC-ccEEEEccCCCC
Q psy4493 261 NRGLRVSAYHAKLESNV------------------SIAFGLGIDKPN-VRFVIHHCLSKS 301 (323)
Q Consensus 261 ~~~~~v~~~h~~~~~~~------------------T~~~~~Gid~~~-v~~Vi~~~~p~~ 301 (323)
+.|+++..+||++++.. |++++||+|+|+ |++||+||+|+.
T Consensus 351 ~~g~~a~~lhg~~~~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 351 NHGVKAVAYHATKPKEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred hCCceEEEEeCCCCHHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 99999999999996443 489999999999 899999999973
No 73
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=1.4e-25 Score=211.81 Aligned_cols=263 Identities=16% Similarity=0.087 Sum_probs=169.4
Q ss_pred CCCChhHHHHHHHHhcC---CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-----
Q psy4493 22 TDFRPNQLAAINIALLK---KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----- 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~---~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs----- 93 (323)
..+||+|.++++.++.+ +..++++|||.|||...+.++.. -++.+||++|+..
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-------------------l~k~tLILvps~~Lv~QW 314 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-------------------VKKSCLVLCTSAVSVEQW 314 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-------------------hCCCEEEEeCcHHHHHHH
Confidence 66899999999988743 36899999999999655444432 1356999999877
Q ss_pred --hhhhc-Cee---e---e-----ccCCCeeEEEEcccccccc----hhHHHHHHHHHhhCCcceEEEeccccccccCCC
Q psy4493 94 --LLKKK-KIC---L---M-----TESSSLKLLYVSPEKLAKS----KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHD 155 (323)
Q Consensus 94 --~l~~~-~i~---l---~-----~~~~~~~vii~Tp~~l~~~----~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~ 155 (323)
.+... .+. + . .......|+|+|.+++... ......+.. +....++++|+||||++..
T Consensus 315 ~~ef~~~~~l~~~~I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~-l~~~~~gLII~DEvH~lpA---- 389 (732)
T TIGR00603 315 KQQFKMWSTIDDSQICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEW-LTNREWGLILLDEVHVVPA---- 389 (732)
T ss_pred HHHHHHhcCCCCceEEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHH-hccccCCEEEEEccccccH----
Confidence 22221 111 1 0 1112367999999988521 011111111 2224789999999998854
Q ss_pred chHHHHhHHHHHhhCCCCCEEEEeecCChhHH--HHHHHHhCCCCcEEEecC-------CCCCCceeEEEecCC------
Q psy4493 156 FRPDYQYLSILKTMFPDVPILGLTATATTKVM--LDVQKMLQIEDCVVIKAP-------FNRPNLFYEVRIKPA------ 220 (323)
Q Consensus 156 ~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~--~~i~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~------ 220 (323)
+.+.. +...+.....++||||+..+.. .++...+| +.++..+ ....+..+.-..++-
T Consensus 390 --~~fr~---il~~l~a~~RLGLTATP~ReD~~~~~L~~LiG---P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~ 461 (732)
T TIGR00603 390 --AMFRR---VLTIVQAHCKLGLTATLVREDDKITDLNFLIG---PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYR 461 (732)
T ss_pred --HHHHH---HHHhcCcCcEEEEeecCcccCCchhhhhhhcC---CeeeecCHHHHHhCCccccceEEEEEecCCHHHHH
Confidence 22222 2233345578999999975432 22222222 2232221 111111111111110
Q ss_pred ---------------chhHHHHHHHHHHHhh-cCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc-------
Q psy4493 221 ---------------AQKDCLDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------- 277 (323)
Q Consensus 221 ---------------~~~~~~~~l~~~l~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------- 277 (323)
....|+..+..++..+ ..+.++||||+++..+..++..|. +..+||++++.+
T Consensus 462 ~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~ 536 (732)
T TIGR00603 462 EYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQN 536 (732)
T ss_pred HHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHH
Confidence 1123444444455433 267899999999999999988883 566899999877
Q ss_pred ------------ceeeecccccCCccEEEEccCC-CCHhHHHHHhccCCCCCCCCCC
Q psy4493 278 ------------SIAFGLGIDKPNVRFVIHHCLS-KSMENFYQVSIAFGLGKHSFRS 321 (323)
Q Consensus 278 ------------T~~~~~Gid~~~v~~Vi~~~~p-~~~~~~~qr~GR~gR~g~~g~~ 321 (323)
|+++++|+|+|++++||+++.| .|..+|+||+||++|.+..|.+
T Consensus 537 Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~ 593 (732)
T TIGR00603 537 FQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDA 593 (732)
T ss_pred HHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCcc
Confidence 8999999999999999999987 5999999999999999987764
No 74
>PRK13766 Hef nuclease; Provisional
Probab=99.94 E-value=8.3e-26 Score=222.47 Aligned_cols=273 Identities=17% Similarity=0.212 Sum_probs=176.8
Q ss_pred CCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------h
Q psy4493 22 TDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------L 94 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------~ 94 (323)
-..|++|...+..++.+ +.++++|||.|||......+... + ...+..+++++||.+ .
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~-------------l--~~~~~~vLvl~Pt~~L~~Q~~~~ 77 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAER-------------L--HKKGGKVLILAPTKPLVEQHAEF 77 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHH-------------H--HhCCCeEEEEeCcHHHHHHHHHH
Confidence 46799999988887766 89999999999997555444331 0 013567999999987 2
Q ss_pred hhh-cCe---e---e---------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchH
Q psy4493 95 LKK-KKI---C---L---------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRP 158 (323)
Q Consensus 95 l~~-~~i---~---l---------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~ 158 (323)
+.. .+. . + .......+|+|+||+.+.. ..+.......+++++||||||++... +.
T Consensus 78 ~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~-----~l~~~~~~~~~~~liVvDEaH~~~~~---~~- 148 (773)
T PRK13766 78 FRKFLNIPEEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIEN-----DLIAGRISLEDVSLLIFDEAHRAVGN---YA- 148 (773)
T ss_pred HHHHhCCCCceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHH-----HHHcCCCChhhCcEEEEECCcccccc---cc-
Confidence 222 122 2 1 1123467899999998863 12333334568999999999998642 11
Q ss_pred HHHhH-HHHHhhCCCCCEEEEeecCChh--HHHHHHHHhCCCCcEEEec-------CCCCCCceeEEE------------
Q psy4493 159 DYQYL-SILKTMFPDVPILGLTATATTK--VMLDVQKMLQIEDCVVIKA-------PFNRPNLFYEVR------------ 216 (323)
Q Consensus 159 ~~~~l-~~l~~~~~~~~~i~lSAT~~~~--~~~~i~~~l~~~~~~~~~~-------~~~~~~~~~~~~------------ 216 (323)
+..+ ..++...+...+++||||+... ....+.+.|++....+... ...++.+.+...
T Consensus 149 -~~~i~~~~~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~ 227 (773)
T PRK13766 149 -YVYIAERYHEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDL 227 (773)
T ss_pred -HHHHHHHHHhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHH
Confidence 1122 2233333456799999998533 2234455554332111100 000000000000
Q ss_pred ------------------------------------------ecC-----------------------------------
Q psy4493 217 ------------------------------------------IKP----------------------------------- 219 (323)
Q Consensus 217 ------------------------------------------~~~----------------------------------- 219 (323)
...
T Consensus 228 l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~ 307 (773)
T PRK13766 228 LNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYL 307 (773)
T ss_pred HHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 000
Q ss_pred -----------------------------------CchhHHHHHHHHHHHhh---cCCCcEEEEeCChhHHHHHHHHHHh
Q psy4493 220 -----------------------------------AAQKDCLDELADLMSRR---FRNQSGIIYTTSIKECEDLREELRN 261 (323)
Q Consensus 220 -----------------------------------~~~~~~~~~l~~~l~~~---~~~~~~iVF~~s~~~~~~l~~~L~~ 261 (323)
.....|+..|.+++.+. .++.++||||+++..|+.+++.|..
T Consensus 308 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~ 387 (773)
T PRK13766 308 ERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEK 387 (773)
T ss_pred HHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 00012333444444432 3678999999999999999999999
Q ss_pred CCCeEEeecCC--------CCCCc------------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCC
Q psy4493 262 RGLRVSAYHAK--------LESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLG 315 (323)
Q Consensus 262 ~~~~v~~~h~~--------~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~ 315 (323)
.|+.+..+||. +++.+ |+++++|+|+|++++||+||+|++...|+||+||+||.
T Consensus 388 ~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~ 467 (773)
T PRK13766 388 EGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQ 467 (773)
T ss_pred CCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcC
Confidence 99999999886 55443 99999999999999999999999999999999999997
Q ss_pred CCCCCC
Q psy4493 316 KHSFRS 321 (323)
Q Consensus 316 g~~g~~ 321 (323)
|. |++
T Consensus 468 ~~-~~v 472 (773)
T PRK13766 468 EE-GRV 472 (773)
T ss_pred CC-CEE
Confidence 65 543
No 75
>KOG0952|consensus
Probab=99.94 E-value=1.6e-26 Score=217.76 Aligned_cols=286 Identities=18% Similarity=0.204 Sum_probs=192.7
Q ss_pred HHhcCCCCCChhHHHHHHHHhc-CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-
Q psy4493 16 KSKFNLTDFRPNQLAAINIALL-KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK- 93 (323)
Q Consensus 16 ~~~~~~~~~~~~Q~~~~~~~~~-~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs- 93 (323)
+..|++..|...|..+++.+.. +.+.++.+|||+|||..+..++.+++.- +.+-......+-.++.+||+.+
T Consensus 103 k~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~------~~~~~~i~k~~fKiVYIaPmKAL 176 (1230)
T KOG0952|consen 103 KGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKE------HEEQGDIAKDDFKIVYIAPMKAL 176 (1230)
T ss_pred hhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHh------hccccccccCCceEEEEechHHH
Confidence 4677888999999999998764 6789999999999998766666553211 0000000112334899999999
Q ss_pred ----------hhhhcCeee----------eccCCCeeEEEEccccccc-chhHHHHHHHHHhhCCcceEEEeccccccc-
Q psy4493 94 ----------LLKKKKICL----------MTESSSLKLLYVSPEKLAK-SKSFMTKLQKMYKAGCLARIAIDEVHCCSS- 151 (323)
Q Consensus 94 ----------~l~~~~i~l----------~~~~~~~~vii~Tp~~l~~-~~~~~~~l~~~~~~~~v~~vVvDEah~~~~- 151 (323)
.+...|+.+ ...-.+++|+|+|||++-- +..+. .+....+.|++|||||+|.+.+
T Consensus 177 a~Em~~~~~kkl~~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~---~d~~l~~~V~LviIDEVHlLhd~ 253 (1230)
T KOG0952|consen 177 AAEMVDKFSKKLAPLGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSV---GDSALFSLVRLVIIDEVHLLHDD 253 (1230)
T ss_pred HHHHHHHHhhhcccccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeec---cchhhhhheeeEEeeeehhhcCc
Confidence 566667762 2334578999999999842 11111 1133456899999999999965
Q ss_pred cCCCchHHHHhHHHHHh-hCCCCCEEEEeecCChhHHHHHHHHhCCCC---cEEEecCCCCCCceeEEEecCCc------
Q psy4493 152 WGHDFRPDYQYLSILKT-MFPDVPILGLTATATTKVMLDVQKMLQIED---CVVIKAPFNRPNLFYEVRIKPAA------ 221 (323)
Q Consensus 152 ~~~~~r~~~~~l~~l~~-~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~------ 221 (323)
.|...+.-..+...+.. ....++++++|||+|+ ..|+..||+... ...++.++.+-++...+.-....
T Consensus 254 RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN--~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~ 331 (1230)
T KOG0952|consen 254 RGPVLETIVARTLRLVESSQSMIRIVGLSATLPN--YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQK 331 (1230)
T ss_pred ccchHHHHHHHHHHHHHhhhhheEEEEeeccCCC--HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhh
Confidence 33222222222222222 2247899999999999 779999998853 22334444444443333322211
Q ss_pred ---hhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhC----C-------------------CeEEeecCCCCC
Q psy4493 222 ---QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR----G-------------------LRVSAYHAKLES 275 (323)
Q Consensus 222 ---~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~----~-------------------~~v~~~h~~~~~ 275 (323)
.+..++++.+++. ++.+++|||.+++.+...|+.|.+. | ..++++|+||.-
T Consensus 332 ~~~d~~~~~kv~e~~~---~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r 408 (1230)
T KOG0952|consen 332 KNIDEVCYDKVVEFLQ---EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLR 408 (1230)
T ss_pred hhHHHHHHHHHHHHHH---cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccch
Confidence 2234455666665 7899999999999999999888763 1 237889999988
Q ss_pred Cc------------------ceeeecccccCCccEEEEccCC-----C------CHhHHHHHhccCCCCC
Q psy4493 276 NV------------------SIAFGLGIDKPNVRFVIHHCLS-----K------SMENFYQVSIAFGLGK 316 (323)
Q Consensus 276 ~~------------------T~~~~~Gid~~~v~~Vi~~~~p-----~------~~~~~~qr~GR~gR~g 316 (323)
++ |..++.|+|+| ..+||.-|-+ + +..+.+|..|||||..
T Consensus 409 ~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLP-A~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPq 477 (1230)
T KOG0952|consen 409 SDRQLVEKEFKEGHIKVLCCTATLAWGVNLP-AYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQ 477 (1230)
T ss_pred hhHHHHHHHHhcCCceEEEecceeeeccCCc-ceEEEecCCcccccccCceeeehHHHHHHHHhccCCCC
Confidence 87 99999999999 6677764432 2 4567899999999975
No 76
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.94 E-value=1.2e-25 Score=212.52 Aligned_cols=144 Identities=17% Similarity=0.137 Sum_probs=112.8
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEe-cCCchhHHHHHHHHHHHhh-cCCCcEEEEeCChhH
Q psy4493 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRI-KPAAQKDCLDELADLMSRR-FRNQSGIIYTTSIKE 251 (323)
Q Consensus 174 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~-~~~~~~iVF~~s~~~ 251 (323)
++.|||+|...+ .+++.+.+++. ++..+.++|..+..... .-....+|...+.+.+... ..+.++||||+|++.
T Consensus 361 kl~GmTGTa~~~-~~Ef~~iY~l~---v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~ 436 (762)
T TIGR03714 361 KLSGMTGTGKVA-EKEFIETYSLS---VVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEM 436 (762)
T ss_pred hhcccCCCChhH-HHHHHHHhCCC---EEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHH
Confidence 356777776443 34455555543 45556677766543221 1123456788888877643 478899999999999
Q ss_pred HHHHHHHHHhCCCeEEeecCCCCCCc----------------ceeeecccccC---------CccEEEEccCCCCHhHHH
Q psy4493 252 CEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLGIDKP---------NVRFVIHHCLSKSMENFY 306 (323)
Q Consensus 252 ~~~l~~~L~~~~~~v~~~h~~~~~~~----------------T~~~~~Gid~~---------~v~~Vi~~~~p~~~~~~~ 306 (323)
++.++..|.+.|+++..+||++.+.+ |++++||+|++ ++.+|+++++|....+ +
T Consensus 437 se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~ 515 (762)
T TIGR03714 437 SEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKGAVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-L 515 (762)
T ss_pred HHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCCeEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-H
Confidence 99999999999999999999998776 99999999999 9999999999988776 9
Q ss_pred HHhccCCCCCCCCCCC
Q psy4493 307 QVSIAFGLGKHSFRSR 322 (323)
Q Consensus 307 qr~GR~gR~g~~g~~~ 322 (323)
||+||+||.|++|.|+
T Consensus 516 qr~GRtGRqG~~G~s~ 531 (762)
T TIGR03714 516 QLRGRSGRQGDPGSSQ 531 (762)
T ss_pred HhhhcccCCCCceeEE
Confidence 9999999999999876
No 77
>KOG0329|consensus
Probab=99.94 E-value=1.4e-27 Score=192.89 Aligned_cols=258 Identities=16% Similarity=0.173 Sum_probs=176.5
Q ss_pred CCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh------
Q psy4493 20 NLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK------ 93 (323)
Q Consensus 20 ~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs------ 93 (323)
|++++...|.++++....|-|++..+..|+|||+.++.+- .|+ |+..-..-.+++...|..
T Consensus 61 gfehpsevqhecipqailgmdvlcqaksgmgktavfvl~t-----------lqq--iepv~g~vsvlvmchtrelafqi~ 127 (387)
T KOG0329|consen 61 GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT-----------LQQ--IEPVDGQVSVLVMCHTRELAFQIS 127 (387)
T ss_pred cCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhh-----------hhh--cCCCCCeEEEEEEeccHHHHHHHH
Confidence 7889999999999999999999999999999997533221 111 111112235788889988
Q ss_pred ----hhhh----cCee-------e----eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceEEEeccccccccC
Q psy4493 94 ----LLKK----KKIC-------L----MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARIAIDEVHCCSSWG 153 (323)
Q Consensus 94 ----~l~~----~~i~-------l----~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~vVvDEah~~~~~~ 153 (323)
++.+ ..+. + .....-++|+|+||++++. +.+. .....+++.+|+|||+.++++-
T Consensus 128 ~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilA------Lvr~k~l~lk~vkhFvlDEcdkmle~l 201 (387)
T KOG0329|consen 128 KEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILA------LVRNRSLNLKNVKHFVLDECDKMLEQL 201 (387)
T ss_pred HHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHH------HHHhccCchhhcceeehhhHHHHHHHH
Confidence 1111 1111 1 1112378999999999985 3333 4567799999999999998753
Q ss_pred CCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEec-CCCC---CCc-eeEEEecCCchhHHHHH
Q psy4493 154 HDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKA-PFNR---PNL-FYEVRIKPAAQKDCLDE 228 (323)
Q Consensus 154 ~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~---~~~-~~~~~~~~~~~~~~~~~ 228 (323)
+.|.+...+ .+...+..|++.+|||++.+++....+++ .+|..+-. ...+ ..+ +|++.-....+..++..
T Consensus 202 -DMrRDvQEi--fr~tp~~KQvmmfsatlskeiRpvC~kFm--QdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~d 276 (387)
T KOG0329|consen 202 -DMRRDVQEI--FRMTPHEKQVMMFSATLSKEIRPVCHKFM--QDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLND 276 (387)
T ss_pred -HHHHHHHHH--hhcCcccceeeeeeeecchhhHHHHHhhh--cCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhh
Confidence 455555554 33344488999999999999887777774 33332211 1111 112 23333333334445555
Q ss_pred HHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCcceeeecccccCCccEEEEccCCCCHhHHHHH
Q psy4493 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQV 308 (323)
Q Consensus 229 l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr 308 (323)
|++.+. -.+++||+.|+.... ++++ -++ |++++||+|+..|+.|+|||+|.+..+|+||
T Consensus 277 LLd~Le----FNQVvIFvKsv~Rl~-----f~kr--~va----------t~lfgrgmdiervNi~~NYdmp~~~DtYlHr 335 (387)
T KOG0329|consen 277 LLDVLE----FNQVVIFVKSVQRLS-----FQKR--LVA----------TDLFGRGMDIERVNIVFNYDMPEDSDTYLHR 335 (387)
T ss_pred hhhhhh----hcceeEeeehhhhhh-----hhhh--hHH----------hhhhccccCcccceeeeccCCCCCchHHHHH
Confidence 555543 479999999988732 1111 011 9999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCC
Q psy4493 309 SIAFGLGKHSFRSR 322 (323)
Q Consensus 309 ~GR~gR~g~~g~~~ 322 (323)
+|||||.|..|-+|
T Consensus 336 v~rAgrfGtkglai 349 (387)
T KOG0329|consen 336 VARAGRFGTKGLAI 349 (387)
T ss_pred hhhhhcccccccee
Confidence 99999999999776
No 78
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.94 E-value=5.1e-25 Score=214.71 Aligned_cols=96 Identities=14% Similarity=0.109 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHH-hCCCeEEeecCCCCCCc--------------------ceeeec
Q psy4493 225 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELR-NRGLRVSAYHAKLESNV--------------------SIAFGL 283 (323)
Q Consensus 225 ~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~-~~~~~v~~~h~~~~~~~--------------------T~~~~~ 283 (323)
|++.|.++++. ..+.|+||||+++..+..+++.|+ ..|+++..+||+|+..+ |++.++
T Consensus 480 Ki~~L~~~L~~-~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgse 558 (956)
T PRK04914 480 RVEWLIDFLKS-HRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSE 558 (956)
T ss_pred HHHHHHHHHHh-cCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhcc
Confidence 45556676663 357899999999999999999994 67999999999999877 999999
Q ss_pred ccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCC
Q psy4493 284 GIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRS 321 (323)
Q Consensus 284 Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~ 321 (323)
|+|++.+++||+||+|+++..|.||+||++|.|+.+..
T Consensus 559 GlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V 596 (956)
T PRK04914 559 GRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDI 596 (956)
T ss_pred CCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceE
Confidence 99999999999999999999999999999999998754
No 79
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.93 E-value=3.5e-24 Score=196.41 Aligned_cols=261 Identities=17% Similarity=0.251 Sum_probs=172.5
Q ss_pred CCCCChhHHHHHHHHhc----CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchhhhh
Q psy4493 21 LTDFRPNQLAAINIALL----KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLK 96 (323)
Q Consensus 21 ~~~~~~~Q~~~~~~~~~----~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs~l~ 96 (323)
...+|+.|.++++++.. .+..++++|||.|||.....++.. -+.+++|++||...+.
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~-------------------~~~~~Lvlv~~~~L~~ 94 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAE-------------------LKRSTLVLVPTKELLD 94 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHH-------------------hcCCEEEEECcHHHHH
Confidence 45689999999999998 888999999999999665555544 1233999999998222
Q ss_pred hc--------C----ee-e--eccCCC-eeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHH
Q psy4493 97 KK--------K----IC-L--MTESSS-LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDY 160 (323)
Q Consensus 97 ~~--------~----i~-l--~~~~~~-~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~ 160 (323)
+. + +. + ...... ..|.|+|-+++.... ....+.....+++|+||||++.... +
T Consensus 95 Qw~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~vat~qtl~~~~-----~l~~~~~~~~~liI~DE~Hh~~a~~--~---- 163 (442)
T COG1061 95 QWAEALKKFLLLNDEIGIYGGGEKELEPAKVTVATVQTLARRQ-----LLDEFLGNEFGLIIFDEVHHLPAPS--Y---- 163 (442)
T ss_pred HHHHHHHHhcCCccccceecCceeccCCCcEEEEEhHHHhhhh-----hhhhhcccccCEEEEEccccCCcHH--H----
Confidence 21 1 11 1 111222 469999999987421 1122223369999999999987622 2
Q ss_pred HhHHHHHhhCCCCC-EEEEeecCChhHHHHHHHHhCCCCcEEEecC--------CCCCCceeEEEecCCc----------
Q psy4493 161 QYLSILKTMFPDVP-ILGLTATATTKVMLDVQKMLQIEDCVVIKAP--------FNRPNLFYEVRIKPAA---------- 221 (323)
Q Consensus 161 ~~l~~l~~~~~~~~-~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~---------- 221 (323)
..+ ...+.... +++||||+...+...+......-.+.++..+ ...|...+.+......
T Consensus 164 ~~~---~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~ 240 (442)
T COG1061 164 RRI---LELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKES 240 (442)
T ss_pred HHH---HHhhhcccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhh
Confidence 222 22223333 9999999886542222222222223333321 1122222222210000
Q ss_pred -------------------------hhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCC
Q psy4493 222 -------------------------QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN 276 (323)
Q Consensus 222 -------------------------~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~ 276 (323)
...+...+...+..+.++.+++|||.++.+++.++..+...|. +..+.+..+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~ 319 (442)
T COG1061 241 ARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKE 319 (442)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHH
Confidence 1112222333333222477999999999999999999998887 88888888888
Q ss_pred c------------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCC
Q psy4493 277 V------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLG 315 (323)
Q Consensus 277 ~------------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~ 315 (323)
+ +.++.+|+|+|+++++|....+.|...|+||+||.-|.
T Consensus 320 eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 320 EREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred HHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 8 78999999999999999999999999999999999993
No 80
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.93 E-value=7.2e-25 Score=205.96 Aligned_cols=145 Identities=24% Similarity=0.244 Sum_probs=112.3
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecC-CchhHHHHHHHHHHH-hhcCCCcEEEEeCChhH
Q psy4493 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKP-AAQKDCLDELADLMS-RRFRNQSGIIYTTSIKE 251 (323)
Q Consensus 174 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~-~~~~~~~~iVF~~s~~~ 251 (323)
++.|||+|+..+ .+++.+.+++. ++..+.++|..+......- ....+++..+.+.+. .+..++|+||||+|+..
T Consensus 342 kl~GmTGTa~te-~~E~~~iY~l~---vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~ 417 (745)
T TIGR00963 342 KLSGMTGTAKTE-EEEFEKIYNLE---VVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEK 417 (745)
T ss_pred hhhccCCCcHHH-HHHHHHHhCCC---EEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 356777777543 34556666554 4445666666543322111 234567777777664 34478999999999999
Q ss_pred HHHHHHHHHhCCCeEEeecCCCCCCc----------------ceeeecccccCC-------ccEEEEccCCCCHhHHHHH
Q psy4493 252 CEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLGIDKPN-------VRFVIHHCLSKSMENFYQV 308 (323)
Q Consensus 252 ~~~l~~~L~~~~~~v~~~h~~~~~~~----------------T~~~~~Gid~~~-------v~~Vi~~~~p~~~~~~~qr 308 (323)
++.++..|.+.|+++..+|++....+ |++++||+|++. ..+||+++.|.|...|.|+
T Consensus 418 se~ls~~L~~~gi~~~~Lna~q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~ 497 (745)
T TIGR00963 418 SELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQL 497 (745)
T ss_pred HHHHHHHHHHcCCCeEEeeCChHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHH
Confidence 99999999999999999999944444 999999999998 5599999999999999999
Q ss_pred hccCCCCCCCCCCC
Q psy4493 309 SIAFGLGKHSFRSR 322 (323)
Q Consensus 309 ~GR~gR~g~~g~~~ 322 (323)
+||+||.|.+|.++
T Consensus 498 ~GRtGRqG~~G~s~ 511 (745)
T TIGR00963 498 RGRSGRQGDPGSSR 511 (745)
T ss_pred hccccCCCCCcceE
Confidence 99999999999876
No 81
>KOG0354|consensus
Probab=99.93 E-value=2.3e-24 Score=200.29 Aligned_cols=274 Identities=19% Similarity=0.243 Sum_probs=173.9
Q ss_pred CCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------
Q psy4493 21 LTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK------- 93 (323)
Q Consensus 21 ~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs------- 93 (323)
.-.+|+.|.+....++ +++.++.+|||+|||....-.+.+.|.+. ....+++.|||.-
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~--------------p~~KiVF~aP~~pLv~QQ~a 124 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWR--------------PKGKVVFLAPTRPLVNQQIA 124 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcC--------------CcceEEEeeCCchHHHHHHH
Confidence 3678999999999999 99999999999999988888887765442 2245888999977
Q ss_pred hhhhcCee------e---------eccCCCeeEEEEcccccccchhHHHHHHH-HHh-hCCcceEEEeccccccccCCCc
Q psy4493 94 LLKKKKIC------L---------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYK-AGCLARIAIDEVHCCSSWGHDF 156 (323)
Q Consensus 94 ~l~~~~i~------l---------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~-~~~v~~vVvDEah~~~~~~~~~ 156 (323)
.....+++ + .......+|+|+||+.+.+ .+.+ ... +..+.++||||||+-... +.|
T Consensus 125 ~~~~~~~~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~n------dL~~~~~~~ls~fs~iv~DE~Hra~kn-~~Y 197 (746)
T KOG0354|consen 125 CFSIYLIPYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILEN------DLKSGLHDELSDFSLIVFDECHRTSKN-HPY 197 (746)
T ss_pred HHhhccCcccceeeccCccCCCchhhhhcccceEEeChHhhhh------hcccccccccceEEEEEEccccccccc-ccH
Confidence 22222222 1 2334578999999999975 2332 111 367999999999988652 122
Q ss_pred hHHHHhHHHHHhhCC-CCCEEEEeecCChhHH---HHHHHHh---CCC--------------------------------
Q psy4493 157 RPDYQYLSILKTMFP-DVPILGLTATATTKVM---LDVQKML---QIE-------------------------------- 197 (323)
Q Consensus 157 r~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~---~~i~~~l---~~~-------------------------------- 197 (323)
-.. +..+..... ..|++|||||+..... +.+.... ...
T Consensus 198 ~~V---mr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~ 274 (746)
T KOG0354|consen 198 NNI---MREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDP 274 (746)
T ss_pred HHH---HHHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhh
Confidence 222 222333333 4499999999985432 1111110 000
Q ss_pred ---------------------CcE-EEec----------CCCCCCce------------------eEEE-----------
Q psy4493 198 ---------------------DCV-VIKA----------PFNRPNLF------------------YEVR----------- 216 (323)
Q Consensus 198 ---------------------~~~-~~~~----------~~~~~~~~------------------~~~~----------- 216 (323)
+.. .+.. ...+.+.+ ..+.
T Consensus 275 f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f 354 (746)
T KOG0354|consen 275 FGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDF 354 (746)
T ss_pred HHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhh
Confidence 000 0000 00000000 0000
Q ss_pred ---------------------------------ecCCchhHHHHHHHHHHHhh---cCCCcEEEEeCChhHHHHHHHHHH
Q psy4493 217 ---------------------------------IKPAAQKDCLDELADLMSRR---FRNQSGIIYTTSIKECEDLREELR 260 (323)
Q Consensus 217 ---------------------------------~~~~~~~~~~~~l~~~l~~~---~~~~~~iVF~~s~~~~~~l~~~L~ 260 (323)
..+.....+++.+.+++.+. .++.++||||.+|..|..+..+|.
T Consensus 355 ~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~ 434 (746)
T KOG0354|consen 355 YEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLL 434 (746)
T ss_pred ccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHH
Confidence 00000123444455555432 357899999999999999999998
Q ss_pred h---CCCeEEeecC--------CCCCCc------------------ceeeecccccCCccEEEEccCCCCHhHHHHHhcc
Q psy4493 261 N---RGLRVSAYHA--------KLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIA 311 (323)
Q Consensus 261 ~---~~~~v~~~h~--------~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR 311 (323)
+ .|++...+-| +|++.+ |++.++|+|+++|+.||.||...|+...+||.||
T Consensus 435 ~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR 514 (746)
T KOG0354|consen 435 QLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR 514 (746)
T ss_pred hhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc
Confidence 3 2444444433 455544 9999999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy4493 312 FGLGKHSFRS 321 (323)
Q Consensus 312 ~gR~g~~g~~ 321 (323)
||.- .|+|
T Consensus 515 -gRa~-ns~~ 522 (746)
T KOG0354|consen 515 -GRAR-NSKC 522 (746)
T ss_pred -cccc-CCeE
Confidence 9953 4554
No 82
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.92 E-value=4.4e-24 Score=204.98 Aligned_cols=267 Identities=16% Similarity=0.137 Sum_probs=176.4
Q ss_pred CCCChhHHHHHHHHhcC---CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-----
Q psy4493 22 TDFRPNQLAAINIALLK---KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----- 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~---~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs----- 93 (323)
..+++.|.++++.+..+ ++.++.++||+|||+.....+.. .+.+|+.+++++||.+
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~----------------~l~~g~~vLvLvPt~~L~~Q~ 206 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAE----------------VLAQGKQALVLVPEIALTPQM 206 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHH----------------HHHcCCeEEEEeCcHHHHHHH
Confidence 45889999999999873 77899999999999886655433 2346889999999998
Q ss_pred --hhhh-cCee---e--------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccC
Q psy4493 94 --LLKK-KKIC---L--------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWG 153 (323)
Q Consensus 94 --~l~~-~~i~---l--------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~ 153 (323)
.+.+ .|.. + ....+..+|+|+|+..+.. ...++++|||||+|....+.
T Consensus 207 ~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~------------p~~~l~liVvDEeh~~s~~~ 274 (679)
T PRK05580 207 LARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFL------------PFKNLGLIIVDEEHDSSYKQ 274 (679)
T ss_pred HHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcc------------cccCCCEEEEECCCcccccc
Confidence 3332 2333 1 1234568999999976642 23589999999999876543
Q ss_pred CC-chHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEec--CC---CCCCceeEEEecCCch-----
Q psy4493 154 HD-FRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKA--PF---NRPNLFYEVRIKPAAQ----- 222 (323)
Q Consensus 154 ~~-~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~----- 222 (323)
+. .+.....+..++....+.+++++|||++.+....+.+ .....+.. .. ..|.+. +.......
T Consensus 275 ~~~p~y~~r~va~~ra~~~~~~~il~SATps~~s~~~~~~----g~~~~~~l~~r~~~~~~p~v~--~id~~~~~~~~~~ 348 (679)
T PRK05580 275 QEGPRYHARDLAVVRAKLENIPVVLGSATPSLESLANAQQ----GRYRLLRLTKRAGGARLPEVE--IIDMRELLRGENG 348 (679)
T ss_pred CcCCCCcHHHHHHHHhhccCCCEEEEcCCCCHHHHHHHhc----cceeEEEeccccccCCCCeEE--EEechhhhhhccc
Confidence 21 1112244555666667899999999998765433221 11122211 11 122222 22211100
Q ss_pred hHHHHHHHHHHHhhc-CCCcEEEEeCCh----------------------------------------------------
Q psy4493 223 KDCLDELADLMSRRF-RNQSGIIYTTSI---------------------------------------------------- 249 (323)
Q Consensus 223 ~~~~~~l~~~l~~~~-~~~~~iVF~~s~---------------------------------------------------- 249 (323)
...-..+++.+++.. ++.++|||+|.+
T Consensus 349 ~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg 428 (679)
T PRK05580 349 SFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECG 428 (679)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCc
Confidence 001133444444332 566899997752
Q ss_pred --------hHHHHHHHHHHhC--CCeEEeecCCCCCCc--------------------ceeeecccccCCccEEEEc--c
Q psy4493 250 --------KECEDLREELRNR--GLRVSAYHAKLESNV--------------------SIAFGLGIDKPNVRFVIHH--C 297 (323)
Q Consensus 250 --------~~~~~l~~~L~~~--~~~v~~~h~~~~~~~--------------------T~~~~~Gid~~~v~~Vi~~--~ 297 (323)
..++++++.|.+. +.++..+|++++... |+++++|+|+|+|++|+.+ |
T Consensus 429 ~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD 508 (679)
T PRK05580 429 STDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDAD 508 (679)
T ss_pred CCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCc
Confidence 1456888888876 788999999987532 9999999999999999654 4
Q ss_pred CCCC----------HhHHHHHhccCCCCCCCCCCC
Q psy4493 298 LSKS----------MENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 298 ~p~~----------~~~~~qr~GR~gR~g~~g~~~ 322 (323)
.+.+ ...|+|++||+||.++.|+++
T Consensus 509 ~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~vi 543 (679)
T PRK05580 509 LGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVL 543 (679)
T ss_pred hhccCCccchHHHHHHHHHHHHhhccCCCCCCEEE
Confidence 4433 257999999999999999876
No 83
>PRK09694 helicase Cas3; Provisional
Probab=99.92 E-value=2.3e-23 Score=201.94 Aligned_cols=272 Identities=12% Similarity=0.084 Sum_probs=165.6
Q ss_pred hcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh----
Q psy4493 18 KFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK---- 93 (323)
Q Consensus 18 ~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs---- 93 (323)
.|+...+||.|..+.+....+.-+++.+|||+|||+....+....+ .......+++.+||.+
T Consensus 281 ~~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~--------------~~~~~~gi~~aLPT~Atan~ 346 (878)
T PRK09694 281 LDNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLI--------------DQGLADSIIFALPTQATANA 346 (878)
T ss_pred ccCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHH--------------HhCCCCeEEEECcHHHHHHH
Confidence 3445678899987755433345578889999999988665543310 0011245777777776
Q ss_pred ---hhhh----c----Ceee-------e-------------------------------ccCCCeeEEEEcccccccchh
Q psy4493 94 ---LLKK----K----KICL-------M-------------------------------TESSSLKLLYVSPEKLAKSKS 124 (323)
Q Consensus 94 ---~l~~----~----~i~l-------~-------------------------------~~~~~~~vii~Tp~~l~~~~~ 124 (323)
.+.+ . .+.| . ......+++|+|+.+++.. .
T Consensus 347 m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a-~ 425 (878)
T PRK09694 347 MLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLIS-V 425 (878)
T ss_pred HHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHH-H
Confidence 1110 0 1111 0 0001258999999999731 1
Q ss_pred HH---HHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhC--CCCCEEEEeecCChhHHHHHHHHhCCCC-
Q psy4493 125 FM---TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF--PDVPILGLTATATTKVMLDVQKMLQIED- 198 (323)
Q Consensus 125 ~~---~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~--~~~~~i~lSAT~~~~~~~~i~~~l~~~~- 198 (323)
+. ..++.... .-++|||||+|.+.. +...+ |..+.... ...++|+||||+|...++.+.+.++...
T Consensus 426 l~~kh~~lR~~~L--a~svvIiDEVHAyD~----ym~~l--L~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~ 497 (878)
T PRK09694 426 LPVKHRFIRGFGL--GRSVLIVDEVHAYDA----YMYGL--LEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDP 497 (878)
T ss_pred HccchHHHHHHhh--ccCeEEEechhhCCH----HHHHH--HHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccc
Confidence 10 11121111 235899999998743 22221 22222221 2678999999999988877777654321
Q ss_pred -------cEE----------EecCCCC----CCceeEEEec--C--CchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHH
Q psy4493 199 -------CVV----------IKAPFNR----PNLFYEVRIK--P--AAQKDCLDELADLMSRRFRNQSGIIYTTSIKECE 253 (323)
Q Consensus 199 -------~~~----------~~~~~~~----~~~~~~~~~~--~--~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~ 253 (323)
|.+ +...... ......+... . ......++.+.+.+. .+++++|||||++.|+
T Consensus 498 ~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~---~g~~vLVf~NTV~~Aq 574 (878)
T PRK09694 498 VELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAAN---AGAQVCLICNLVDDAQ 574 (878)
T ss_pred cccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHh---cCCEEEEEECCHHHHH
Confidence 000 0000000 0111111111 1 111223333333332 6789999999999999
Q ss_pred HHHHHHHhCC---CeEEeecCCCCCCc--------------------------ceeeecccccCCccEEEEccCCCCHhH
Q psy4493 254 DLREELRNRG---LRVSAYHAKLESNV--------------------------SIAFGLGIDKPNVRFVIHHCLSKSMEN 304 (323)
Q Consensus 254 ~l~~~L~~~~---~~v~~~h~~~~~~~--------------------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~ 304 (323)
++++.|++.+ ..+..+||.++..+ |+++++|+|++ ++.+|....| ...
T Consensus 575 ~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItdlaP--ids 651 (878)
T PRK09694 575 KLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQLCP--VDL 651 (878)
T ss_pred HHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEECCCC--HHH
Confidence 9999999764 67999999987654 99999999995 8999998777 459
Q ss_pred HHHHhccCCCCCCC
Q psy4493 305 FYQVSIAFGLGKHS 318 (323)
Q Consensus 305 ~~qr~GR~gR~g~~ 318 (323)
++||+||++|.++.
T Consensus 652 LiQRaGR~~R~~~~ 665 (878)
T PRK09694 652 LFQRLGRLHRHHRK 665 (878)
T ss_pred HHHHHhccCCCCCC
Confidence 99999999999874
No 84
>KOG0948|consensus
Probab=99.92 E-value=3.3e-24 Score=195.89 Aligned_cols=274 Identities=16% Similarity=0.146 Sum_probs=186.3
Q ss_pred CCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------h
Q psy4493 22 TDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------L 94 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------~ 94 (323)
..+-|+|..++.-+-.+.++++++.|+.|||....-++.. ++...+.|+.-.|-.+ .
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~----------------sLr~kQRVIYTSPIKALSNQKYRE 191 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAM----------------SLREKQRVIYTSPIKALSNQKYRE 191 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHH----------------HHHhcCeEEeeChhhhhcchhHHH
Confidence 4556889888888888899999999999999654443321 2344567999999887 1
Q ss_pred hh-hc-Ceee----eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHh
Q psy4493 95 LK-KK-KICL----MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168 (323)
Q Consensus 95 l~-~~-~i~l----~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~ 168 (323)
+. +. ++.| ...+.++.-+|+|.|.|.. . +.+..-....|.+||+||+|.|.+.. |..... .-+.-
T Consensus 192 l~~EF~DVGLMTGDVTInP~ASCLVMTTEILRs-M----LYRGSEvmrEVaWVIFDEIHYMRDkE---RGVVWE-ETIIl 262 (1041)
T KOG0948|consen 192 LLEEFKDVGLMTGDVTINPDASCLVMTTEILRS-M----LYRGSEVMREVAWVIFDEIHYMRDKE---RGVVWE-ETIIL 262 (1041)
T ss_pred HHHHhcccceeecceeeCCCCceeeeHHHHHHH-H----HhccchHhheeeeEEeeeehhccccc---cceeee-eeEEe
Confidence 11 11 2223 4456677889999998853 1 22233445689999999999997632 222111 11223
Q ss_pred hCCCCCEEEEeecCChhHH-HHHHHHhCCCCcEEEecCCCCCCceeEEEecCCc------------hhHHHHH-------
Q psy4493 169 MFPDVPILGLTATATTKVM-LDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAA------------QKDCLDE------- 228 (323)
Q Consensus 169 ~~~~~~~i~lSAT~~~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~------- 228 (323)
+..+.+.++||||+|+..+ .+|...++-+++.++-+...+.+++.++.+.... .++.+..
T Consensus 263 lP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~ 342 (1041)
T KOG0948|consen 263 LPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRK 342 (1041)
T ss_pred ccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhc
Confidence 3348899999999999754 4455556667788887777666665444432211 1222222
Q ss_pred -------------------------------HHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCC-------------
Q psy4493 229 -------------------------------LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGL------------- 264 (323)
Q Consensus 229 -------------------------------l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~------------- 264 (323)
++.++-. .+..|+|||+.|+++|+.+|..+.+..+
T Consensus 343 ~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~-~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF 421 (1041)
T KOG0948|consen 343 AGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIME-RNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIF 421 (1041)
T ss_pred cCCCccccccccccccCCcCCCCCCcccHHHHHHHHHh-hcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHH
Confidence 2222221 1456999999999999999998876411
Q ss_pred --------------------------eEEeecCCCCCCc------------------ceeeecccccCCccEEEEccCCC
Q psy4493 265 --------------------------RVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSK 300 (323)
Q Consensus 265 --------------------------~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~p~ 300 (323)
.++++|+|+-+.- |.+++.|+|+| .+.|+....-+
T Consensus 422 ~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMP-AkTVvFT~~rK 500 (1041)
T KOG0948|consen 422 NNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMP-AKTVVFTAVRK 500 (1041)
T ss_pred HHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCc-ceeEEEeeccc
Confidence 2789999988764 99999999999 77777765432
Q ss_pred ---------CHhHHHHHhccCCCCCCCCCCC
Q psy4493 301 ---------SMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 301 ---------~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|..+|+|+.|||||.|.+.+.|
T Consensus 501 fDG~~fRwissGEYIQMSGRAGRRG~DdrGi 531 (1041)
T KOG0948|consen 501 FDGKKFRWISSGEYIQMSGRAGRRGIDDRGI 531 (1041)
T ss_pred cCCcceeeecccceEEecccccccCCCCCce
Confidence 6678999999999999886654
No 85
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=5.7e-23 Score=190.77 Aligned_cols=246 Identities=15% Similarity=0.116 Sum_probs=160.1
Q ss_pred EEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------hhhh-cCee---e---------
Q psy4493 43 IIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------LLKK-KKIC---L--------- 102 (323)
Q Consensus 43 ~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------~l~~-~~i~---l--------- 102 (323)
+.+|||+|||+....++.. .+.+|+.+++++|+.+ .+++ .+.. +
T Consensus 2 L~g~TGsGKT~v~l~~i~~----------------~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er 65 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEK----------------VLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEK 65 (505)
T ss_pred ccCCCCCCHHHHHHHHHHH----------------HHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHH
Confidence 5789999999886655543 2346889999999998 3332 2332 1
Q ss_pred -----eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCc-hHHHHhHHHHHhhCCCCCEE
Q psy4493 103 -----MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDF-RPDYQYLSILKTMFPDVPIL 176 (323)
Q Consensus 103 -----~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~-r~~~~~l~~l~~~~~~~~~i 176 (323)
....+..+|+|+|+..+.. ...++++|||||+|....+++.. +.....+..++....+.+++
T Consensus 66 ~~~~~~~~~g~~~IVVGTrsalf~------------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vi 133 (505)
T TIGR00595 66 LQAWRKVKNGEILVVIGTRSALFL------------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVV 133 (505)
T ss_pred HHHHHHHHcCCCCEEECChHHHcC------------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEE
Confidence 1234568999999876642 23589999999999887554322 21224456677777799999
Q ss_pred EEeecCChhHHHHHHHHhCCCCcEEEecC-----CCCCCceeEEEecCCch--hHHHHHHHHHHHhhc-CCCcEEEEeCC
Q psy4493 177 GLTATATTKVMLDVQKMLQIEDCVVIKAP-----FNRPNLFYEVRIKPAAQ--KDCLDELADLMSRRF-RNQSGIIYTTS 248 (323)
Q Consensus 177 ~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~-~~~~~iVF~~s 248 (323)
++|||++.+....+.. .....+..+ ...|.+. +....... ...-..+++.+.+.. .++++|||+|+
T Consensus 134 l~SATPsles~~~~~~----g~~~~~~l~~r~~~~~~p~v~--vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnr 207 (505)
T TIGR00595 134 LGSATPSLESYHNAKQ----KAYRLLVLTRRVSGRKPPEVK--LIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNR 207 (505)
T ss_pred EEeCCCCHHHHHHHhc----CCeEEeechhhhcCCCCCeEE--EEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeC
Confidence 9999988665332211 111111111 1122222 22221111 111223444443322 56799999776
Q ss_pred hhH------------------------------------------------------------HHHHHHHHHhC--CCeE
Q psy4493 249 IKE------------------------------------------------------------CEDLREELRNR--GLRV 266 (323)
Q Consensus 249 ~~~------------------------------------------------------------~~~l~~~L~~~--~~~v 266 (323)
+.- ++++++.|.+. +.++
T Consensus 208 rGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v 287 (505)
T TIGR00595 208 RGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARI 287 (505)
T ss_pred CcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcE
Confidence 532 58888888876 7789
Q ss_pred EeecCCCCCCc--------------------ceeeecccccCCccEEE--EccC----CC------CHhHHHHHhccCCC
Q psy4493 267 SAYHAKLESNV--------------------SIAFGLGIDKPNVRFVI--HHCL----SK------SMENFYQVSIAFGL 314 (323)
Q Consensus 267 ~~~h~~~~~~~--------------------T~~~~~Gid~~~v~~Vi--~~~~----p~------~~~~~~qr~GR~gR 314 (323)
..+|++++..+ |+++++|+|+|+|++|+ ++|. |. ....|+|++||+||
T Consensus 288 ~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR 367 (505)
T TIGR00595 288 ARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGR 367 (505)
T ss_pred EEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCC
Confidence 99999987653 99999999999999885 5553 22 24579999999999
Q ss_pred CCCCCCCC
Q psy4493 315 GKHSFRSR 322 (323)
Q Consensus 315 ~g~~g~~~ 322 (323)
.++.|+++
T Consensus 368 ~~~~g~vi 375 (505)
T TIGR00595 368 AEDPGQVI 375 (505)
T ss_pred CCCCCEEE
Confidence 99999765
No 86
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.90 E-value=3.4e-22 Score=193.00 Aligned_cols=275 Identities=19% Similarity=0.203 Sum_probs=213.5
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhc----CC--CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHH
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL----KK--DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINI 78 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~----~~--~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~ 78 (323)
||-+.+..+.+...|.+.+ .+-|..+|+.+.. ++ |-++..-=|+|||+....+ |+.+
T Consensus 577 f~~d~~~q~~F~~~FPyeE-T~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRA----------------AFkA 639 (1139)
T COG1197 577 FPPDTEWQEEFEASFPYEE-TPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRA----------------AFKA 639 (1139)
T ss_pred CCCChHHHHHHHhcCCCcC-CHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHH----------------HHHH
Confidence 5666678889999999988 8889999998863 33 5778888999999874433 4667
Q ss_pred HhcCCcEEEEccchh-----------hhhhcCeee-----------------eccCCCeeEEEEcccccccchhHHHHHH
Q psy4493 79 ALLKKDAIIIMPTGK-----------LLKKKKICL-----------------MTESSSLKLLYVSPEKLAKSKSFMTKLQ 130 (323)
Q Consensus 79 ~~~~~~~lv~~pTgs-----------~l~~~~i~l-----------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~ 130 (323)
++.||.|.|++||-= ++....|++ ....+..||+|+|-.-|.+
T Consensus 640 V~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~k--------- 710 (1139)
T COG1197 640 VMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSK--------- 710 (1139)
T ss_pred hcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCC---------
Confidence 889999999999976 555555552 4557899999999654433
Q ss_pred HHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEec-CCCCC
Q psy4493 131 KMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKA-PFNRP 209 (323)
Q Consensus 131 ~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~ 209 (323)
-..+.+++++||||=|+..- ..=..++.+..++-++-||||+-|.... +...|+++..++.+ +.+|-
T Consensus 711 -dv~FkdLGLlIIDEEqRFGV---------k~KEkLK~Lr~~VDvLTLSATPIPRTL~--Msm~GiRdlSvI~TPP~~R~ 778 (1139)
T COG1197 711 -DVKFKDLGLLIIDEEQRFGV---------KHKEKLKELRANVDVLTLSATPIPRTLN--MSLSGIRDLSVIATPPEDRL 778 (1139)
T ss_pred -CcEEecCCeEEEechhhcCc---------cHHHHHHHHhccCcEEEeeCCCCcchHH--HHHhcchhhhhccCCCCCCc
Confidence 22346899999999998864 1122355555689999999999997665 88889998887776 45677
Q ss_pred CceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhC--CCeEEeecCCCCCCc----------
Q psy4493 210 NLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR--GLRVSAYHAKLESNV---------- 277 (323)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~--~~~v~~~h~~~~~~~---------- 277 (323)
.++..+.+... .-.-+.+..- ..+++++-..+|.++..+.+++.|++. ..++++-||.|+..+
T Consensus 779 pV~T~V~~~d~--~~ireAI~RE---l~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~ 853 (1139)
T COG1197 779 PVKTFVSEYDD--LLIREAILRE---LLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN 853 (1139)
T ss_pred ceEEEEecCCh--HHHHHHHHHH---HhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHc
Confidence 77777665442 2222333333 347899888899999999999999976 457999999999998
Q ss_pred --------ceeeecccccCCccEEEEccCC-CCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 --------SIAFGLGIDKPNVRFVIHHCLS-KSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 --------T~~~~~Gid~~~v~~Vi~~~~p-~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|...+.|||+|+++.+|.-+.- ..+++.-|..||+||..+.+.|.
T Consensus 854 g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAY 907 (1139)
T COG1197 854 GEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAY 907 (1139)
T ss_pred CCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEE
Confidence 9999999999999999887654 47889999999999999999875
No 87
>KOG0951|consensus
Probab=99.89 E-value=2.8e-22 Score=191.76 Aligned_cols=286 Identities=14% Similarity=0.111 Sum_probs=186.4
Q ss_pred CCCCCChhHHHHHHHHhcCC-CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-----
Q psy4493 20 NLTDFRPNQLAAINIALLKK-DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----- 93 (323)
Q Consensus 20 ~~~~~~~~Q~~~~~~~~~~~-~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs----- 93 (323)
+...|.+.|-.+..+++.++ +.++.+|||.|||-.....+....+-.. .+.-...++.-.++.+||+-+
T Consensus 306 g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~-----r~dgs~nl~~fKIVYIAPmKaLvqE~ 380 (1674)
T KOG0951|consen 306 GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHL-----REDGSVNLAPFKIVYIAPMKALVQEM 380 (1674)
T ss_pred cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhccc-----ccccceecccceEEEEeeHHHHHHHH
Confidence 44557788988888888754 5888889999999754433322121100 000000123345899999998
Q ss_pred ------hhhhcCeee----------eccCCCeeEEEEcccccccchhHHHHHHHH----HhhCCcceEEEeccccccc-c
Q psy4493 94 ------LLKKKKICL----------MTESSSLKLLYVSPEKLAKSKSFMTKLQKM----YKAGCLARIAIDEVHCCSS-W 152 (323)
Q Consensus 94 ------~l~~~~i~l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~----~~~~~v~~vVvDEah~~~~-~ 152 (323)
.+...||.+ ........|+++|||..- .+.+. ...+-++++|+||.|++.+ .
T Consensus 381 VgsfSkRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~D-------iITRk~gdraY~qlvrLlIIDEIHLLhDdR 453 (1674)
T KOG0951|consen 381 VGSFSKRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKWD-------IITRKSGDRAYEQLVRLLIIDEIHLLHDDR 453 (1674)
T ss_pred HHHHHhhccccCcEEEEecccccchhhhhhcceeEEeccchhh-------hhhcccCchhHHHHHHHHhhhhhhhccccc
Confidence 666778874 223456789999999883 12211 2333578899999999954 3
Q ss_pred CCCchHHHHhH-HHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEe--cCCCCCCceeEEEecCCchhHH-HHH
Q psy4493 153 GHDFRPDYQYL-SILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIK--APFNRPNLFYEVRIKPAAQKDC-LDE 228 (323)
Q Consensus 153 ~~~~r~~~~~l-~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~ 228 (323)
|........+. ......-..++++++|||+|+ ..++..+|+....-++. .+..+-++.+.+......+..+ +..
T Consensus 454 GpvLESIVaRt~r~ses~~e~~RlVGLSATLPN--y~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qa 531 (1674)
T KOG0951|consen 454 GPVLESIVARTFRRSESTEEGSRLVGLSATLPN--YEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQA 531 (1674)
T ss_pred chHHHHHHHHHHHHhhhcccCceeeeecccCCc--hhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHH
Confidence 32221111111 111112237899999999999 77889988776544443 3666666766666544332211 222
Q ss_pred ----HHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhC-------------------------------------CCeEE
Q psy4493 229 ----LADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-------------------------------------GLRVS 267 (323)
Q Consensus 229 ----l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~-------------------------------------~~~v~ 267 (323)
.++-+.++....++|||+.|++++.+.|..+++. .+.++
T Consensus 532 mNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfa 611 (1674)
T KOG0951|consen 532 MNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFA 611 (1674)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccce
Confidence 2222333556699999999999999999988842 33489
Q ss_pred eecCCCCCCc------------------ceeeecccccCCccEEEE----ccC------CCCHhHHHHHhccCCCCCCCC
Q psy4493 268 AYHAKLESNV------------------SIAFGLGIDKPNVRFVIH----HCL------SKSMENFYQVSIAFGLGKHSF 319 (323)
Q Consensus 268 ~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~----~~~------p~~~~~~~qr~GR~gR~g~~g 319 (323)
++|+||+..+ |..+++|+|.|.-..+|- ||+ +.++.+.+||.||+||.+-++
T Consensus 612 IHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~ 691 (1674)
T KOG0951|consen 612 IHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDT 691 (1674)
T ss_pred eeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCc
Confidence 9999999888 999999999995554442 443 347889999999999987543
No 88
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.89 E-value=9e-22 Score=196.02 Aligned_cols=274 Identities=15% Similarity=0.134 Sum_probs=162.8
Q ss_pred CCCChhHHHHHHHHh----c-CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh---
Q psy4493 22 TDFRPNQLAAINIAL----L-KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--- 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~----~-~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--- 93 (323)
..+|+.|.++++++. . .+..++++|||+|||..+...+..++ . ....+.+|+++|+..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~-------------~-~~~~~rVLfLvDR~~L~~ 477 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLL-------------K-AKRFRRILFLVDRSALGE 477 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHH-------------h-cCccCeEEEEecHHHHHH
Confidence 458999999997765 2 35689999999999966555544311 0 012357999999888
Q ss_pred ----hhhhcCee-------------e--eccCCCeeEEEEcccccccchhHHHHHH-HHHhhCCcceEEEeccccccc--
Q psy4493 94 ----LLKKKKIC-------------L--MTESSSLKLLYVSPEKLAKSKSFMTKLQ-KMYKAGCLARIAIDEVHCCSS-- 151 (323)
Q Consensus 94 ----~l~~~~i~-------------l--~~~~~~~~vii~Tp~~l~~~~~~~~~l~-~~~~~~~v~~vVvDEah~~~~-- 151 (323)
.+...+.. + .......+|+|+|.+++... .+...-. .......+++|||||||+-..
T Consensus 478 Qa~~~F~~~~~~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~-~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d 556 (1123)
T PRK11448 478 QAEDAFKDTKIEGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKR-ILYSDDPMDKPPVDQYDCIIVDEAHRGYTLD 556 (1123)
T ss_pred HHHHHHHhcccccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHh-hhccccccccCCCCcccEEEEECCCCCCccc
Confidence 22222111 1 11233578999999988531 1100000 112346788999999998531
Q ss_pred ----cC-CCchHH---HHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCC-------------------CcEEEec
Q psy4493 152 ----WG-HDFRPD---YQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIE-------------------DCVVIKA 204 (323)
Q Consensus 152 ----~~-~~~r~~---~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~-------------------~~~~~~~ 204 (323)
.+ ..++.. +.....+...+ +...||||||+.... ...+|.+ .+..+.+
T Consensus 557 ~~~~~~~~~~~~~~~~~~~yr~iL~yF-dA~~IGLTATP~r~t----~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t 631 (1123)
T PRK11448 557 KEMSEGELQFRDQLDYVSKYRRVLDYF-DAVKIGLTATPALHT----TEIFGEPVYTYSYREAVIDGYLIDHEPPIRIET 631 (1123)
T ss_pred cccccchhccchhhhHHHHHHHHHhhc-CccEEEEecCCccch----hHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEE
Confidence 00 012211 22333344443 578999999997543 3333311 0111111
Q ss_pred CCCCCCceeEE--------------E--ecCCc---h----------hHHH----HHHHHHHHhhcCCCcEEEEeCChhH
Q psy4493 205 PFNRPNLFYEV--------------R--IKPAA---Q----------KDCL----DELADLMSRRFRNQSGIIYTTSIKE 251 (323)
Q Consensus 205 ~~~~~~~~~~~--------------~--~~~~~---~----------~~~~----~~l~~~l~~~~~~~~~iVF~~s~~~ 251 (323)
......+.+.- . ..+.. . .+.. ..+.+.+.. ..++|+||||.++++
T Consensus 632 ~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~-~~~~KtiIF~~s~~H 710 (1123)
T PRK11448 632 RLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDP-TGEGKTLIFAATDAH 710 (1123)
T ss_pred EeccccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhc-cCCCcEEEEEcCHHH
Confidence 11110000000 0 00000 0 0000 112222221 234799999999999
Q ss_pred HHHHHHHHHhC------C---CeEEeecCCCCCCc-----------------ceeeecccccCCccEEEEccCCCCHhHH
Q psy4493 252 CEDLREELRNR------G---LRVSAYHAKLESNV-----------------SIAFGLGIDKPNVRFVIHHCLSKSMENF 305 (323)
Q Consensus 252 ~~~l~~~L~~~------~---~~v~~~h~~~~~~~-----------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~ 305 (323)
|+.+++.|.+. + ..+..++|+.+..+ ++++.+|+|+|.|++||+++.+.|...|
T Consensus 711 A~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf 790 (1123)
T PRK11448 711 ADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDKPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILY 790 (1123)
T ss_pred HHHHHHHHHHHHHhhcCCcCccceEEEeCCccchHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHH
Confidence 99999887753 1 24566888876544 7999999999999999999999999999
Q ss_pred HHHhccCCCCC
Q psy4493 306 YQVSIAFGLGK 316 (323)
Q Consensus 306 ~qr~GR~gR~g 316 (323)
+||+||+.|..
T Consensus 791 ~QmIGRgtR~~ 801 (1123)
T PRK11448 791 EQMLGRATRLC 801 (1123)
T ss_pred HHHHhhhccCC
Confidence 99999999964
No 89
>KOG0947|consensus
Probab=99.89 E-value=5.2e-22 Score=185.75 Aligned_cols=268 Identities=16% Similarity=0.128 Sum_probs=172.8
Q ss_pred CCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh----hhhh-
Q psy4493 23 DFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----LLKK- 97 (323)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs----~l~~- 97 (323)
++-.+|++++.....+.+++|.++|+.|||....-++.- +...+..++.-+|-.+ .++.
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAial----------------aq~h~TR~iYTSPIKALSNQKfRDF 360 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIAL----------------AQKHMTRTIYTSPIKALSNQKFRDF 360 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHH----------------HHhhccceEecchhhhhccchHHHH
Confidence 446799999999999999999999999999543333321 1123467899999877 1111
Q ss_pred ---cCee-e----eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhh
Q psy4493 98 ---KKIC-L----MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169 (323)
Q Consensus 98 ---~~i~-l----~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~ 169 (323)
.|.. | .+....+..+|+|.|.|.. . +.+......++.+||+||+|.+.+..++. .+.++ +.-+
T Consensus 361 k~tF~DvgLlTGDvqinPeAsCLIMTTEILRs-M----LYrgadliRDvE~VIFDEVHYiND~eRGv--VWEEV--iIMl 431 (1248)
T KOG0947|consen 361 KETFGDVGLLTGDVQINPEASCLIMTTEILRS-M----LYRGADLIRDVEFVIFDEVHYINDVERGV--VWEEV--IIML 431 (1248)
T ss_pred HHhccccceeecceeeCCCcceEeehHHHHHH-H----HhcccchhhccceEEEeeeeecccccccc--cceee--eeec
Confidence 1111 2 4556788899999998863 1 22334445689999999999997632111 11111 3334
Q ss_pred CCCCCEEEEeecCChhHHHHHHHHhCCCC---cEEEecCCCCCCceeEEEec----------------------------
Q psy4493 170 FPDVPILGLTATATTKVMLDVQKMLQIED---CVVIKAPFNRPNLFYEVRIK---------------------------- 218 (323)
Q Consensus 170 ~~~~~~i~lSAT~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------- 218 (323)
.+++++|+||||.++.. ++..|.|-.. ..++.++..+-++...+...
T Consensus 432 P~HV~~IlLSATVPN~~--EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ 509 (1248)
T KOG0947|consen 432 PRHVNFILLSATVPNTL--EFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKE 509 (1248)
T ss_pred cccceEEEEeccCCChH--HHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccc
Confidence 45999999999999954 5677766422 22222211111111000000
Q ss_pred ---------C------------------------CchhHH-----HHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHH
Q psy4493 219 ---------P------------------------AAQKDC-----LDELADLMSRRFRNQSGIIYTTSIKECEDLREELR 260 (323)
Q Consensus 219 ---------~------------------------~~~~~~-----~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~ 260 (323)
. ....++ +..++..+.+ .+--|++|||.|++.|++.+++|.
T Consensus 510 ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k-~~lLP~VvFvFSkkrCde~a~~L~ 588 (1248)
T KOG0947|consen 510 AKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRK-KNLLPVVVFVFSKKRCDEYADYLT 588 (1248)
T ss_pred ccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhh-cccCceEEEEEccccHHHHHHHHh
Confidence 0 000001 2223333332 144699999999999999999997
Q ss_pred hCCC---------------------------------------eEEeecCCCCCCc------------------ceeeec
Q psy4493 261 NRGL---------------------------------------RVSAYHAKLESNV------------------SIAFGL 283 (323)
Q Consensus 261 ~~~~---------------------------------------~v~~~h~~~~~~~------------------T~~~~~ 283 (323)
..+. .++++|||+-+.- |.+++.
T Consensus 589 ~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAM 668 (1248)
T KOG0947|consen 589 NLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAM 668 (1248)
T ss_pred ccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhh
Confidence 6411 2788999987765 999999
Q ss_pred ccccCCccEEEEccCCC---------CHhHHHHHhccCCCCCCCC
Q psy4493 284 GIDKPNVRFVIHHCLSK---------SMENFYQVSIAFGLGKHSF 319 (323)
Q Consensus 284 Gid~~~v~~Vi~~~~p~---------~~~~~~qr~GR~gR~g~~g 319 (323)
|||+| .++||.-.+-+ .+.+|.|++|||||.|-+.
T Consensus 669 GVNMP-ARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~ 712 (1248)
T KOG0947|consen 669 GVNMP-ARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDE 712 (1248)
T ss_pred hcCCC-ceeEEeeehhhccCcceeecCChhHHhhhccccccccCc
Confidence 99999 77777665543 6779999999999999653
No 90
>KOG0950|consensus
Probab=99.88 E-value=2.4e-21 Score=182.12 Aligned_cols=284 Identities=17% Similarity=0.189 Sum_probs=179.4
Q ss_pred HHHHHHHhcCCCCCChhHHHHH--HHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEE
Q psy4493 11 VRSVLKSKFNLTDFRPNQLAAI--NIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIII 88 (323)
Q Consensus 11 ~~~~l~~~~~~~~~~~~Q~~~~--~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~ 88 (323)
......+..|...+-.||.+++ ...+.+++.+...||+.|||....-.+. -..+..+++++.+
T Consensus 211 ~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml---------------~~~l~~rr~~lli 275 (1008)
T KOG0950|consen 211 VSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILML---------------REVLCRRRNVLLI 275 (1008)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHH---------------HHHHHHhhceeEe
Confidence 4455556667788889999976 4667889999999999999943322221 1224567889999
Q ss_pred ccchh-------hhhhcCee----e---------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEecccc
Q psy4493 89 MPTGK-------LLKKKKIC----L---------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHC 148 (323)
Q Consensus 89 ~pTgs-------~l~~~~i~----l---------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~ 148 (323)
.|.-+ .+....++ + ......-++.|+|.|+... .....++. .....+++|||||.|+
T Consensus 276 lp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~k~~sv~i~tiEkans--lin~lie~-g~~~~~g~vvVdElhm 352 (1008)
T KOG0950|consen 276 LPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRRKRESVAIATIEKANS--LINSLIEQ-GRLDFLGMVVVDELHM 352 (1008)
T ss_pred cceeehhHHHHhhhhhhccccCCcchhhcccCCCCCcccceeeeeeehHhhHh--HHHHHHhc-CCccccCcEEEeeeee
Confidence 99888 22222222 1 3445567899999999863 22223322 2345688999999999
Q ss_pred ccccCCCchHHHHhHHHHHhhCC--CCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecC----Cch
Q psy4493 149 CSSWGHDFRPDYQYLSILKTMFP--DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKP----AAQ 222 (323)
Q Consensus 149 ~~~~~~~~r~~~~~l~~l~~~~~--~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 222 (323)
+.+.++++-... .+..+..... ..|+|+||||+++ ...+..+|+- .++...+.+..+.-++.... ...
T Consensus 353 i~d~~rg~~lE~-~l~k~~y~~~~~~~~iIGMSATi~N--~~lL~~~L~A---~~y~t~fRPv~L~E~ik~G~~i~~~~r 426 (1008)
T KOG0950|consen 353 IGDKGRGAILEL-LLAKILYENLETSVQIIGMSATIPN--NSLLQDWLDA---FVYTTRFRPVPLKEYIKPGSLIYESSR 426 (1008)
T ss_pred eeccccchHHHH-HHHHHHHhccccceeEeeeecccCC--hHHHHHHhhh---hheecccCcccchhccCCCcccccchh
Confidence 998665554432 2344443333 3569999999998 4566666641 22222222222111111000 001
Q ss_pred hHHHHH----------------HHHHHHhhc-CCCcEEEEeCChhHHHHHHHHHHhC-----------------------
Q psy4493 223 KDCLDE----------------LADLMSRRF-RNQSGIIYTTSIKECEDLREELRNR----------------------- 262 (323)
Q Consensus 223 ~~~~~~----------------l~~~l~~~~-~~~~~iVF~~s~~~~~~l~~~L~~~----------------------- 262 (323)
...+.. ++.+..+-. ++.++||||++++.|+.+|..+...
T Consensus 427 ~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~l 506 (1008)
T KOG0950|consen 427 NKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLL 506 (1008)
T ss_pred hHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHh
Confidence 111111 111111111 4567999999999999999766532
Q ss_pred ---------------CCeEEeecCCCCCCc------------------ceeeecccccCCccEEEEcc----CCCCHhHH
Q psy4493 263 ---------------GLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHC----LSKSMENF 305 (323)
Q Consensus 263 ---------------~~~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~----~p~~~~~~ 305 (323)
...++++|+|++.++ |+.++.|+|.|..+.++-.- ...+..+|
T Consensus 507 r~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~Y 586 (1008)
T KOG0950|consen 507 RRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEY 586 (1008)
T ss_pred hcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhH
Confidence 223899999999998 88899999999666555432 22477899
Q ss_pred HHHhccCCCCCCC
Q psy4493 306 YQVSIAFGLGKHS 318 (323)
Q Consensus 306 ~qr~GR~gR~g~~ 318 (323)
.||+|||||+|-.
T Consensus 587 kQM~GRAGR~gid 599 (1008)
T KOG0950|consen 587 KQMVGRAGRTGID 599 (1008)
T ss_pred Hhhhhhhhhcccc
Confidence 9999999999855
No 91
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.87 E-value=3e-21 Score=186.29 Aligned_cols=268 Identities=20% Similarity=0.196 Sum_probs=179.1
Q ss_pred CCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--------
Q psy4493 22 TDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------- 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------- 93 (323)
.++-++|++++..+..+.++++.+|||+|||....-++. .++..|+.++..+|..+
T Consensus 118 F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~----------------~al~~~qrviYTsPIKALsNQKyrd 181 (1041)
T COG4581 118 FELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIA----------------LALRDGQRVIYTSPIKALSNQKYRD 181 (1041)
T ss_pred CCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHH----------------HHHHcCCceEeccchhhhhhhHHHH
Confidence 455789999999999999999999999999943222221 23456777999999999
Q ss_pred hhhhcC-----eee----eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceEEEeccccccccCCCchHHHHhH
Q psy4493 94 LLKKKK-----ICL----MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL 163 (323)
Q Consensus 94 ~l~~~~-----i~l----~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l 163 (323)
-+...| +.| ...++++.++|+|.|.|.+ .+.. ......+..||+||+|.+.+. .|....+.
T Consensus 182 l~~~fgdv~~~vGL~TGDv~IN~~A~clvMTTEILRn------Mlyrg~~~~~~i~~ViFDEvHyi~D~---eRG~VWEE 252 (1041)
T COG4581 182 LLAKFGDVADMVGLMTGDVSINPDAPCLVMTTEILRN------MLYRGSESLRDIEWVVFDEVHYIGDR---ERGVVWEE 252 (1041)
T ss_pred HHHHhhhhhhhccceecceeeCCCCceEEeeHHHHHH------HhccCcccccccceEEEEeeeecccc---ccchhHHH
Confidence 222233 223 5567788999999988753 3332 355668999999999999873 34333222
Q ss_pred HHHHhhCCCCCEEEEeecCChhHHHHHHHHhC---CCCcEEEecCCCCCCceeEEEecC------Cchh----HH-----
Q psy4493 164 SILKTMFPDVPILGLTATATTKVMLDVQKMLQ---IEDCVVIKAPFNRPNLFYEVRIKP------AAQK----DC----- 225 (323)
Q Consensus 164 ~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----~~----- 225 (323)
.+.....+.++++||||+++.. .+..|++ -.+..++.+...+.++...+.... +... ..
T Consensus 253 -~Ii~lP~~v~~v~LSATv~N~~--EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~ 329 (1041)
T COG4581 253 -VIILLPDHVRFVFLSATVPNAE--EFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSAN 329 (1041)
T ss_pred -HHHhcCCCCcEEEEeCCCCCHH--HHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhh
Confidence 1444444789999999999854 4455554 344444444444333332222110 0000 00
Q ss_pred -------------------------------------HHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhC------
Q psy4493 226 -------------------------------------LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR------ 262 (323)
Q Consensus 226 -------------------------------------~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~------ 262 (323)
...++..+.. .+.-+.|+||.|+..|+..+..+...
T Consensus 330 ~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~-~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~ 408 (1041)
T COG4581 330 RSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK-DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTE 408 (1041)
T ss_pred hhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhh-hcCCceEEEEEchhhHHHHHHHhcccccccCC
Confidence 0112222221 14569999999999999998877632
Q ss_pred ----------------------CC-------------eEEeecCCCCCCc------------------ceeeecccccCC
Q psy4493 263 ----------------------GL-------------RVSAYHAKLESNV------------------SIAFGLGIDKPN 289 (323)
Q Consensus 263 ----------------------~~-------------~v~~~h~~~~~~~------------------T~~~~~Gid~~~ 289 (323)
++ -++++|++|-+.. |.+++.|+|+|
T Consensus 409 ~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP- 487 (1041)
T COG4581 409 EKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP- 487 (1041)
T ss_pred cHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc-
Confidence 11 1568899988876 99999999999
Q ss_pred ccEEEEccCCC---------CHhHHHHHhccCCCCCCCC
Q psy4493 290 VRFVIHHCLSK---------SMENFYQVSIAFGLGKHSF 319 (323)
Q Consensus 290 v~~Vi~~~~p~---------~~~~~~qr~GR~gR~g~~g 319 (323)
.+.|+.+.+-+ +..+|.|+.|||||.|.+.
T Consensus 488 artvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~ 526 (1041)
T COG4581 488 ARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDV 526 (1041)
T ss_pred ccceeeeeeEEecCCceeecChhHHHHhhhhhccccccc
Confidence 77777766443 7789999999999999764
No 92
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.86 E-value=9e-20 Score=153.76 Aligned_cols=266 Identities=16% Similarity=0.134 Sum_probs=171.7
Q ss_pred hcCC-CCCChhHHHHHHHH----hcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccch
Q psy4493 18 KFNL-TDFRPNQLAAINIA----LLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG 92 (323)
Q Consensus 18 ~~~~-~~~~~~Q~~~~~~~----~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTg 92 (323)
.++| ..+.+.|..+.+.. .+.++.++.+-||.|||+-+...+.. ++-+|..+.+..|-.
T Consensus 91 ~L~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~----------------al~~G~~vciASPRv 154 (441)
T COG4098 91 VLQWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQ----------------ALNQGGRVCIASPRV 154 (441)
T ss_pred eeeeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHH----------------HHhcCCeEEEecCcc
Confidence 4445 44678888866544 56789999999999999876666543 134677788888876
Q ss_pred h-----------hhhhcCeee----eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCch
Q psy4493 93 K-----------LLKKKKICL----MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFR 157 (323)
Q Consensus 93 s-----------~l~~~~i~l----~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r 157 (323)
. .+...+|.+ ........++|+|..+|++ +. +.++++||||+|...-..
T Consensus 155 DVclEl~~Rlk~aF~~~~I~~Lyg~S~~~fr~plvVaTtHQLlr-------Fk-----~aFD~liIDEVDAFP~~~---- 218 (441)
T COG4098 155 DVCLELYPRLKQAFSNCDIDLLYGDSDSYFRAPLVVATTHQLLR-------FK-----QAFDLLIIDEVDAFPFSD---- 218 (441)
T ss_pred cchHHHHHHHHHhhccCCeeeEecCCchhccccEEEEehHHHHH-------HH-----hhccEEEEeccccccccC----
Confidence 6 333345553 2222347899999988873 22 257899999999775311
Q ss_pred HHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCc---eeEEEecCCc--hhHHH-HHHHH
Q psy4493 158 PDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNL---FYEVRIKPAA--QKDCL-DELAD 231 (323)
Q Consensus 158 ~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~-~~l~~ 231 (323)
....+.+.-.....+..+|.||||+++++.+++..- -.....+...+++.++ .+........ ..+++ ..|..
T Consensus 219 d~~L~~Av~~ark~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~ 296 (441)
T COG4098 219 DQSLQYAVKKARKKEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKR 296 (441)
T ss_pred CHHHHHHHHHhhcccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHH
Confidence 111222223333347789999999998876544321 1111222223333222 2222211111 11222 25777
Q ss_pred HHHhhc-CCCcEEEEeCChhHHHHHHHHHHhC-C-CeEEeecCCCCCCc----------------ceeeecccccCCccE
Q psy4493 232 LMSRRF-RNQSGIIYTTSIKECEDLREELRNR-G-LRVSAYHAKLESNV----------------SIAFGLGIDKPNVRF 292 (323)
Q Consensus 232 ~l~~~~-~~~~~iVF~~s~~~~~~l~~~L~~~-~-~~v~~~h~~~~~~~----------------T~~~~~Gid~~~v~~ 292 (323)
+++++. .+.+++||.++.+..+.+++.|+.. + ..++..|+.-.... |..++||+.+|+|+.
T Consensus 297 ~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV 376 (441)
T COG4098 297 WLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDV 376 (441)
T ss_pred HHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHHHHHcCceEEEEEeehhhcccccccceE
Confidence 776543 5789999999999999999999643 2 35677777655443 999999999999998
Q ss_pred EEEccCC--CCHhHHHHHhccCCCCCC
Q psy4493 293 VIHHCLS--KSMENFYQVSIAFGLGKH 317 (323)
Q Consensus 293 Vi~~~~p--~~~~~~~qr~GR~gR~g~ 317 (323)
.|.-.-- .+-+.++|.+||+||.-.
T Consensus 377 ~Vlgaeh~vfTesaLVQIaGRvGRs~~ 403 (441)
T COG4098 377 FVLGAEHRVFTESALVQIAGRVGRSLE 403 (441)
T ss_pred EEecCCcccccHHHHHHHhhhccCCCc
Confidence 7765433 466789999999999753
No 93
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=5e-20 Score=175.01 Aligned_cols=101 Identities=20% Similarity=0.145 Sum_probs=91.6
Q ss_pred hhHHHHHHHHHHHh-hcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc----------------ceeeecc
Q psy4493 222 QKDCLDELADLMSR-RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLG 284 (323)
Q Consensus 222 ~~~~~~~l~~~l~~-~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~----------------T~~~~~G 284 (323)
..++...+.+.+.. +..+.|+||||+|+..++.++..|.+.|+++..+|+++...| |++++||
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~VtIATnmAGRG 501 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGAVTIATNMAGRG 501 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCceEEEEeccccCC
Confidence 45677778877753 347899999999999999999999999999999999988776 9999999
Q ss_pred cccC---Ccc-----EEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 285 IDKP---NVR-----FVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 285 id~~---~v~-----~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+|++ +|. +||+++.|.|...|.|++||+||.|.+|.++
T Consensus 502 tDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 502 TDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred CCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 9994 889 9999999999999999999999999999886
No 94
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.85 E-value=2.2e-19 Score=165.19 Aligned_cols=276 Identities=16% Similarity=0.149 Sum_probs=197.7
Q ss_pred CCCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcC---C---CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHH
Q psy4493 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK---K---DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAIN 77 (323)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~---~---~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~ 77 (323)
.+|+..+..+.+.+.+.++ +..-|..+++.+... . +-++..-=|+|||....-++ +.
T Consensus 244 ~~~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~lam----------------l~ 306 (677)
T COG1200 244 PLPANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAM----------------LA 306 (677)
T ss_pred CCCccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHH----------------HH
Confidence 3677777677776666554 577799999888632 1 14456677999995433333 34
Q ss_pred HHhcCCcEEEEccchh-----------hhhhcCeee-----------------eccCCCeeEEEEcccccccchhHHHHH
Q psy4493 78 IALLKKDAIIIMPTGK-----------LLKKKKICL-----------------MTESSSLKLLYVSPEKLAKSKSFMTKL 129 (323)
Q Consensus 78 ~~~~~~~~lv~~pTgs-----------~l~~~~i~l-----------------~~~~~~~~vii~Tp~~l~~~~~~~~~l 129 (323)
++..|..+.+-|||-- -+...|+++ ....+..+++|+|-.-+.+
T Consensus 307 ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd-------- 378 (677)
T COG1200 307 AIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD-------- 378 (677)
T ss_pred HHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc--------
Confidence 4568899999999976 444456652 4557889999999655543
Q ss_pred HHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCC-CCCEEEEeecCChhHHHHHHHHhCCCCcEEEec-CCC
Q psy4493 130 QKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP-DVPILGLTATATTKVMLDVQKMLQIEDCVVIKA-PFN 207 (323)
Q Consensus 130 ~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~ 207 (323)
...+.++.++|+||=|+.... +=..++..-. .+..+.||||+-|.. .....+|--+..+++. +..
T Consensus 379 --~V~F~~LgLVIiDEQHRFGV~---------QR~~L~~KG~~~Ph~LvMTATPIPRT--LAlt~fgDldvS~IdElP~G 445 (677)
T COG1200 379 --KVEFHNLGLVIIDEQHRFGVH---------QRLALREKGEQNPHVLVMTATPIPRT--LALTAFGDLDVSIIDELPPG 445 (677)
T ss_pred --ceeecceeEEEEeccccccHH---------HHHHHHHhCCCCCcEEEEeCCCchHH--HHHHHhccccchhhccCCCC
Confidence 223458999999999988641 1222555545 578999999999854 3366666666555554 667
Q ss_pred CCCceeEEEecCCchhHHHHHHHHHHHhh-cCCCcEEEEeCChhH--------HHHHHHHHHhC--CCeEEeecCCCCCC
Q psy4493 208 RPNLFYEVRIKPAAQKDCLDELADLMSRR-FRNQSGIIYTTSIKE--------CEDLREELRNR--GLRVSAYHAKLESN 276 (323)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~iVF~~s~~~--------~~~l~~~L~~~--~~~v~~~h~~~~~~ 276 (323)
|.++...+.+.. ....+++.+.+. .++.++.+.|+-.++ +..+++.|+.. +++++.+||.|+.+
T Consensus 446 RkpI~T~~i~~~-----~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~ 520 (677)
T COG1200 446 RKPITTVVIPHE-----RRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPA 520 (677)
T ss_pred CCceEEEEeccc-----cHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChH
Confidence 777776666433 334444444422 278899999987654 55677777743 56799999999988
Q ss_pred c------------------ceeeecccccCCccEEEEccCC-CCHhHHHHHhccCCCCCCCCCCC
Q psy4493 277 V------------------SIAFGLGIDKPNVRFVIHHCLS-KSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 277 ~------------------T~~~~~Gid~~~v~~Vi~~~~p-~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
| |.+.+.|||+|+.++.|..+.- ...++.-|-.||+||.+.++.|+
T Consensus 521 eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~ 585 (677)
T COG1200 521 EKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCV 585 (677)
T ss_pred HHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEE
Confidence 8 9999999999999999998864 37889999999999999999996
No 95
>KOG0349|consensus
Probab=99.85 E-value=2.1e-21 Score=168.10 Aligned_cols=210 Identities=12% Similarity=0.178 Sum_probs=136.2
Q ss_pred ccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceEEEeccccccccCCCchHHHHhHH-HHHhhCC---CCCEEEE
Q psy4493 104 TESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLS-ILKTMFP---DVPILGL 178 (323)
Q Consensus 104 ~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~-~l~~~~~---~~~~i~l 178 (323)
......+|+|+||.++++ .+.. .......+++|+|||+.++..| +..-+.++. .+.+.-. ..|.+.+
T Consensus 335 ql~~g~~ivvGtpgRl~~------~is~g~~~lt~crFlvlDead~lL~qg--y~d~I~r~h~qip~~tsdg~rlq~~vC 406 (725)
T KOG0349|consen 335 QLKDGTHIVVGTPGRLLQ------PISKGLVTLTHCRFLVLDEADLLLGQG--YDDKIYRFHGQIPHMTSDGFRLQSPVC 406 (725)
T ss_pred HhhcCceeeecCchhhhh------hhhccceeeeeeEEEEecchhhhhhcc--cHHHHHHHhccchhhhcCCccccccee
Confidence 334568999999999975 3333 3344567899999999998754 544443432 2222222 4588999
Q ss_pred eecCChhHHHHHH-HHhCCCCcEEE-----------------ecCCCC------CCc-------eeEEEecCCchhHHHH
Q psy4493 179 TATATTKVMLDVQ-KMLQIEDCVVI-----------------KAPFNR------PNL-------FYEVRIKPAAQKDCLD 227 (323)
Q Consensus 179 SAT~~~~~~~~i~-~~l~~~~~~~~-----------------~~~~~~------~~~-------~~~~~~~~~~~~~~~~ 227 (323)
|||+..-....+. +.+.++-.+-. ..+.+. ..+ .-.+.+...+ .+..+
T Consensus 407 satlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~S-pe~~s 485 (725)
T KOG0349|consen 407 SATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVS-PENPS 485 (725)
T ss_pred eeEEeEEEeeehhhhhccCceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCC-CCChh
Confidence 9998743222222 12222111100 000000 000 0000011101 11122
Q ss_pred HHHHHHH--------hhcCCCcEEEEeCChhHHHHHHHHHHhCC---CeEEeecCCCCCCc------------------c
Q psy4493 228 ELADLMS--------RRFRNQSGIIYTTSIKECEDLREELRNRG---LRVSAYHAKLESNV------------------S 278 (323)
Q Consensus 228 ~l~~~l~--------~~~~~~~~iVF~~s~~~~~~l~~~L~~~~---~~v~~~h~~~~~~~------------------T 278 (323)
.-..+++ +++...+.||||.|+..|+.+.+.++++| ++|.++||+..+.| |
T Consensus 486 ~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflict 565 (725)
T KOG0349|consen 486 SATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICT 565 (725)
T ss_pred hhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEe
Confidence 2222222 13456799999999999999999999864 58999999998877 9
Q ss_pred eeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 279 ~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++||+|+..+-++||..+|.+...|+||+||+||+.+-|-+|
T Consensus 566 dvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglai 609 (725)
T KOG0349|consen 566 DVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAI 609 (725)
T ss_pred hhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeE
Confidence 99999999999999999999999999999999999998887665
No 96
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.84 E-value=1.8e-19 Score=172.84 Aligned_cols=265 Identities=15% Similarity=0.075 Sum_probs=173.7
Q ss_pred HHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcC-------CCCCCCcchHHHHHHHhcCCcEEEEccchhhhhhcCee
Q psy4493 29 LAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKF-------NLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC 101 (323)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~-------g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs~l~~~~i~ 101 (323)
.+.++++..+.-+++.++||+|||+++...|.... ++.+||.+-..++..- .-..+|..
T Consensus 56 ~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~R--------------vAeel~~~ 121 (845)
T COG1643 56 DEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAER--------------VAEELGEK 121 (845)
T ss_pred HHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHH--------------HHHHhCCC
Confidence 34556666677788888999999999988776621 1223322221111110 11112221
Q ss_pred --------e---eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhC
Q psy4493 102 --------L---MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170 (323)
Q Consensus 102 --------l---~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~ 170 (323)
+ .....+.+|-++|.+.|++ .+..-..+..+++||+||||+=+-.. ++- +..+..+....
T Consensus 122 ~G~~VGY~iRfe~~~s~~Trik~mTdGiLlr------ei~~D~~Ls~ys~vIiDEaHERSl~t-Dil--Lgllk~~~~~r 192 (845)
T COG1643 122 LGETVGYSIRFESKVSPRTRIKVMTDGILLR------EIQNDPLLSGYSVVIIDEAHERSLNT-DIL--LGLLKDLLARR 192 (845)
T ss_pred cCceeeEEEEeeccCCCCceeEEeccHHHHH------HHhhCcccccCCEEEEcchhhhhHHH-HHH--HHHHHHHHhhc
Confidence 1 3445678999999999985 44443446789999999999643211 111 12233434444
Q ss_pred C-CCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecCCchhHHHHHHHHHHHhh--cCCCcEEEEeC
Q psy4493 171 P-DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR--FRNQSGIIYTT 247 (323)
Q Consensus 171 ~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~iVF~~ 247 (323)
+ +.++|.||||++.+ .+.++++..+...+.....+-.++|.-....+. .....+...+..+ ...+.+|||.+
T Consensus 193 r~DLKiIimSATld~~---rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~--~l~~ai~~~v~~~~~~~~GdILvFLp 267 (845)
T COG1643 193 RDDLKLIIMSATLDAE---RFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADY--ILLDAIVAAVDIHLREGSGSILVFLP 267 (845)
T ss_pred CCCceEEEEecccCHH---HHHHHcCCCCEEEecCCccceEEEecCCCCcch--hHHHHHHHHHHHhccCCCCCEEEECC
Confidence 4 68999999999964 457777654444444444455455432222222 1233333333322 25689999999
Q ss_pred ChhHHHHHHHHHHh----CCCeEEeecCCCCCCc------------------ceeeecccccCCccEEEEccCCC-----
Q psy4493 248 SIKECEDLREELRN----RGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSK----- 300 (323)
Q Consensus 248 s~~~~~~l~~~L~~----~~~~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~p~----- 300 (323)
...+.+.+++.|.+ ....+..+||.|+.++ |++++.++.+|+|++||.-|..+
T Consensus 268 G~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~ 347 (845)
T COG1643 268 GQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYD 347 (845)
T ss_pred cHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccc
Confidence 99999999999997 3578999999999998 99999999999999999877543
Q ss_pred -------------CHhHHHHHhccCCCCCCCCCCC
Q psy4493 301 -------------SMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 301 -------------~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|..+..||.||+||-+ +|.|+
T Consensus 348 ~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicy 381 (845)
T COG1643 348 PRTGLTRLETEPISKASADQRAGRAGRTG-PGICY 381 (845)
T ss_pred cccCceeeeEEEechhhhhhhccccccCC-CceEE
Confidence 6678999999999965 46664
No 97
>KOG0922|consensus
Probab=99.84 E-value=3.7e-19 Score=162.21 Aligned_cols=261 Identities=15% Similarity=0.111 Sum_probs=177.0
Q ss_pred HHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--------hhhhcCee
Q psy4493 30 AAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--------LLKKKKIC 101 (323)
Q Consensus 30 ~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--------~l~~~~i~ 101 (323)
+.+..+.++.-++++..||+|||.++...|.+ -||.. +|+ +-+--|-.= .-.+.|..
T Consensus 58 ~il~~ve~nqvlIviGeTGsGKSTQipQyL~e-aG~~~-------------~g~-I~~TQPRRVAavslA~RVAeE~~~~ 122 (674)
T KOG0922|consen 58 QILYAVEDNQVLIVIGETGSGKSTQIPQYLAE-AGFAS-------------SGK-IACTQPRRVAAVSLAKRVAEEMGCQ 122 (674)
T ss_pred HHHHHHHHCCEEEEEcCCCCCccccHhHHHHh-ccccc-------------CCc-EEeecCchHHHHHHHHHHHHHhCCC
Confidence 35566667777888999999999999998877 34431 122 222222211 11122222
Q ss_pred --------e---eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHH--HHhHHHHHh
Q psy4493 102 --------L---MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPD--YQYLSILKT 168 (323)
Q Consensus 102 --------l---~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~--~~~l~~l~~ 168 (323)
+ .....+.+|.++|-+.|++ +.+.+. .+.+.++||+||||.-. ...+ +..|+.+..
T Consensus 123 lG~~VGY~IRFed~ts~~TrikymTDG~LLR-----E~l~Dp-~LskYsvIIlDEAHERs-----l~TDiLlGlLKki~~ 191 (674)
T KOG0922|consen 123 LGEEVGYTIRFEDSTSKDTRIKYMTDGMLLR-----EILKDP-LLSKYSVIILDEAHERS-----LHTDILLGLLKKILK 191 (674)
T ss_pred cCceeeeEEEecccCCCceeEEEecchHHHH-----HHhcCC-ccccccEEEEechhhhh-----hHHHHHHHHHHHHHh
Confidence 1 4445688999999999985 233332 34588999999999543 2222 122444555
Q ss_pred hCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCC
Q psy4493 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTS 248 (323)
Q Consensus 169 ~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s 248 (323)
..++.++|.+|||++.+ .+.++++..+...+.....+-.+.|...+..+...+.+..+.++-.. .+.+-+|||-..
T Consensus 192 ~R~~LklIimSATlda~---kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~-E~~GDILvFLtG 267 (674)
T KOG0922|consen 192 KRPDLKLIIMSATLDAE---KFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLT-EPPGDILVFLTG 267 (674)
T ss_pred cCCCceEEEEeeeecHH---HHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHcc-CCCCCEEEEeCC
Confidence 55678999999999954 45677665444444455555555555444444445555555555543 366789999999
Q ss_pred hhHHHHHHHHHHhC------C--CeEEeecCCCCCCc------------------ceeeecccccCCccEEEEccCC---
Q psy4493 249 IKECEDLREELRNR------G--LRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLS--- 299 (323)
Q Consensus 249 ~~~~~~l~~~L~~~------~--~~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~p--- 299 (323)
.++.+.+++.|.+. + ..+..+||.|+.++ |+..+..+.++.+.+||.-|+-
T Consensus 268 qeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~ 347 (674)
T KOG0922|consen 268 QEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQK 347 (674)
T ss_pred HHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEE
Confidence 99999999999864 1 12568999999998 9999999999999999987643
Q ss_pred ---------------CCHhHHHHHhccCCCCCCCCCC
Q psy4493 300 ---------------KSMENFYQVSIAFGLGKHSFRS 321 (323)
Q Consensus 300 ---------------~~~~~~~qr~GR~gR~g~~g~~ 321 (323)
-|-.+-.||.|||||.| +|+|
T Consensus 348 ~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkc 383 (674)
T KOG0922|consen 348 KYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKC 383 (674)
T ss_pred eeccccCccceeEEechHHHHhhhcccCCCCC-CceE
Confidence 37778999999999976 4665
No 98
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=8e-19 Score=167.52 Aligned_cols=146 Identities=22% Similarity=0.213 Sum_probs=112.5
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEe-cCCchhHHHHHHHHHHHh-hcCCCcEEEEeCChhH
Q psy4493 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRI-KPAAQKDCLDELADLMSR-RFRNQSGIIYTTSIKE 251 (323)
Q Consensus 174 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~-~~~~~~~iVF~~s~~~ 251 (323)
++.|||+|+..+ .+++.+.+++. ++..+.++|..+..... .-....+|+..+.+.+.+ +..++|+||||+|+..
T Consensus 367 kl~GmTGTa~te-~~E~~~iY~l~---vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~ 442 (830)
T PRK12904 367 KLAGMTGTADTE-AEEFREIYNLD---VVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEK 442 (830)
T ss_pred hhcccCCCcHHH-HHHHHHHhCCC---EEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 356788887644 35556665554 44556677766544221 112356788888888864 3477899999999999
Q ss_pred HHHHHHHHHhCCCeEEeecCCCCCCc----------------ceeeecccccCCc-------------------------
Q psy4493 252 CEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLGIDKPNV------------------------- 290 (323)
Q Consensus 252 ~~~l~~~L~~~~~~v~~~h~~~~~~~----------------T~~~~~Gid~~~v------------------------- 290 (323)
++.+++.|.+.|+++..+|+.....+ |++++||+|++=-
T Consensus 443 se~Ls~~L~~~gi~~~vLnakq~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~ 522 (830)
T PRK12904 443 SELLSKLLKKAGIPHNVLNAKNHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAE 522 (830)
T ss_pred HHHHHHHHHHCCCceEeccCchHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHH
Confidence 99999999999999999999744444 9999999999732
Q ss_pred -------------cEEEEccCCCCHhHHHHHhccCCCCCCCCCCCC
Q psy4493 291 -------------RFVIHHCLSKSMENFYQVSIAFGLGKHSFRSRY 323 (323)
Q Consensus 291 -------------~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~ 323 (323)
-+||-...|.|..--.|-.||+||.|.+|.|.|
T Consensus 523 ~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f 568 (830)
T PRK12904 523 WQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 568 (830)
T ss_pred HhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeE
Confidence 188999999999999999999999999998863
No 99
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.81 E-value=1.9e-18 Score=169.75 Aligned_cols=270 Identities=16% Similarity=0.092 Sum_probs=172.9
Q ss_pred CCChhHHHHHHHHh----cCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHh-cCCcEEEEccchh----
Q psy4493 23 DFRPNQLAAINIAL----LKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIAL-LKKDAIIIMPTGK---- 93 (323)
Q Consensus 23 ~~~~~Q~~~~~~~~----~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~~pTgs---- 93 (323)
.+|++|...++..+ .+...++....|.|||-+.+..+.... ... ..+.+||++|...
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~--------------~~~~~~gp~LIVvP~SlL~nW 234 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLH--------------EYRGITGPHMVVAPKSTLGNW 234 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHH--------------HhcCCCCCEEEEeChHHHHHH
Confidence 68999999987654 456788888999999966655553310 000 1235799999877
Q ss_pred --hhhhcC----ee-e-------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccC
Q psy4493 94 --LLKKKK----IC-L-------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWG 153 (323)
Q Consensus 94 --~l~~~~----i~-l-------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~ 153 (323)
.+.... +- + ....+.++|+|+|.+.+... ...+ ....+++|||||||++-...
T Consensus 235 ~~Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e---~~~L----~k~~W~~VIvDEAHrIKN~~ 307 (1033)
T PLN03142 235 MNEIRRFCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKE---KTAL----KRFSWRYIIIDEAHRIKNEN 307 (1033)
T ss_pred HHHHHHHCCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHH---HHHh----ccCCCCEEEEcCccccCCHH
Confidence 222211 10 0 11235689999999888631 1122 22378899999999986521
Q ss_pred CCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEec-----------------------------
Q psy4493 154 HDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKA----------------------------- 204 (323)
Q Consensus 154 ~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~----------------------------- 204 (323)
..+......+.....++||+|+-.+-..++-..+++-.|..+..
T Consensus 308 -------Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~p 380 (1033)
T PLN03142 308 -------SLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRP 380 (1033)
T ss_pred -------HHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhH
Confidence 11222223334556789999987554444444443322111100
Q ss_pred ----------CCCCCCceeEEEecCCc-----------------------------------------------------
Q psy4493 205 ----------PFNRPNLFYEVRIKPAA----------------------------------------------------- 221 (323)
Q Consensus 205 ----------~~~~~~~~~~~~~~~~~----------------------------------------------------- 221 (323)
....|+....+..+.-.
T Consensus 381 f~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~ 460 (1033)
T PLN03142 381 FLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPY 460 (1033)
T ss_pred HHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcc
Confidence 00111111111111100
Q ss_pred --------hhHHHHHHHHHHHh-hcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc---------------
Q psy4493 222 --------QKDCLDELADLMSR-RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------- 277 (323)
Q Consensus 222 --------~~~~~~~l~~~l~~-~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~--------------- 277 (323)
...|+..|..++.. ...+.++||||........+..+|...|+....++|+++..+
T Consensus 461 ~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~ 540 (1033)
T PLN03142 461 TTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEK 540 (1033)
T ss_pred cchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCc
Confidence 01122222222221 125789999999999999999999999999999999998655
Q ss_pred ------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCC
Q psy4493 278 ------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFR 320 (323)
Q Consensus 278 ------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~ 320 (323)
|.+.+.|+|+..+++||+||+++++....|++||+-|.|+...
T Consensus 541 ~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~ 589 (1033)
T PLN03142 541 FVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKE 589 (1033)
T ss_pred eEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCce
Confidence 9999999999999999999999999999999999999998754
No 100
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.79 E-value=3.6e-18 Score=165.84 Aligned_cols=268 Identities=17% Similarity=0.168 Sum_probs=157.9
Q ss_pred ChhHHHHHHHHhc---CC-CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchhhhhhc--
Q psy4493 25 RPNQLAAINIALL---KK-DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKK-- 98 (323)
Q Consensus 25 ~~~Q~~~~~~~~~---~~-~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs~l~~~-- 98 (323)
++.|..+++.+.. .. .+++.+|||.|||+......... ...- ......++.+.|+.+.+..+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~----------~~~~--~~~~~r~i~vlP~~t~ie~~~~ 264 (733)
T COG1203 197 YELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALAL----------LDEK--IKLKSRVIYVLPFRTIIEDMYR 264 (733)
T ss_pred hHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHH----------hhcc--ccccceEEEEccHHHHHHHHHH
Confidence 5678888877754 23 56788999999997654433221 0000 11234588888888811100
Q ss_pred ------------Ce--------------------ee----eccCCCeeEEEEcccccccc----hhHHHHHHHHHhhCCc
Q psy4493 99 ------------KI--------------------CL----MTESSSLKLLYVSPEKLAKS----KSFMTKLQKMYKAGCL 138 (323)
Q Consensus 99 ------------~i--------------------~l----~~~~~~~~vii~Tp~~l~~~----~~~~~~l~~~~~~~~v 138 (323)
+. .+ ........+.++||...... ..+.. +.. -..
T Consensus 265 r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----l~~ 339 (733)
T COG1203 265 RAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEF-LAL----LLT 339 (733)
T ss_pred HHHhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHH-HHH----HHh
Confidence 00 00 11112234445555544420 01111 111 134
Q ss_pred ceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEec
Q psy4493 139 ARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIK 218 (323)
Q Consensus 139 ~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 218 (323)
+.+|+||+|.+.+.. ..+. ...+-.+... -+.+++++|||+|+...+.+...++.........+..+..-...+...
T Consensus 340 S~vIlDE~h~~~~~~-~~~~-l~~~i~~l~~-~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 416 (733)
T COG1203 340 SLVILDEVHLYADET-MLAA-LLALLEALAE-AGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRK 416 (733)
T ss_pred hchhhccHHhhcccc-hHHH-HHHHHHHHHh-CCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccc
Confidence 689999999887632 1111 1111112122 288999999999999988888876554333222221111111111111
Q ss_pred C-Cchh-----HHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc---------------
Q psy4493 219 P-AAQK-----DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------- 277 (323)
Q Consensus 219 ~-~~~~-----~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~--------------- 277 (323)
. .... .....+... ...+.+++|-|||++.|.++++.|+..+.++..+||.++..+
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~---~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~ 493 (733)
T COG1203 417 ERVDVEDGPQEELIELISEE---VKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQN 493 (733)
T ss_pred cchhhhhhhhHhhhhcchhh---hccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhcc
Confidence 0 0000 111222222 236789999999999999999999998878999999998877
Q ss_pred -------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCC
Q psy4493 278 -------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHS 318 (323)
Q Consensus 278 -------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~ 318 (323)
|++++.|+|+. .+.+|-= +..+.+.+||+||++|.|++
T Consensus 494 ~~~IvVaTQVIEagvDid-fd~mITe--~aPidSLIQR~GRv~R~g~~ 538 (733)
T COG1203 494 EGFIVVATQVIEAGVDID-FDVLITE--LAPIDSLIQRAGRVNRHGKK 538 (733)
T ss_pred CCeEEEEeeEEEEEeccc-cCeeeec--CCCHHHHHHHHHHHhhcccc
Confidence 99999999986 7666543 45566999999999999944
No 101
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=1.2e-17 Score=159.79 Aligned_cols=102 Identities=21% Similarity=0.144 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHHHh-hcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc----------------ceeeecc
Q psy4493 222 QKDCLDELADLMSR-RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLG 284 (323)
Q Consensus 222 ~~~~~~~l~~~l~~-~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~----------------T~~~~~G 284 (323)
..+|+..+.+.+.. +..++|+||||+|++.++.++..|.+.|+++..+|+++.+.| |++++||
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~VtIATNmAGRG 505 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGAVTIATNMAGRG 505 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCcEEEeccCccCC
Confidence 34677777766643 347899999999999999999999999999999999999877 9999999
Q ss_pred cccCC--------------------------------------ccEEEEccCCCCHhHHHHHhccCCCCCCCCCCCC
Q psy4493 285 IDKPN--------------------------------------VRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSRY 323 (323)
Q Consensus 285 id~~~--------------------------------------v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~ 323 (323)
+|+.= --+||-...+.|..-=.|-.||+||.|.+|.|.|
T Consensus 506 tDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f 582 (896)
T PRK13104 506 TDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRF 582 (896)
T ss_pred cceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEE
Confidence 99961 1278888899999999999999999999998863
No 102
>KOG0923|consensus
Probab=99.76 E-value=3e-17 Score=149.08 Aligned_cols=265 Identities=17% Similarity=0.161 Sum_probs=171.3
Q ss_pred hhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCC---------CCCCcchHHHHHHHhcCCcEEEEccchhhhh
Q psy4493 26 PNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNL---------TDFRPNQLAAINIALLKKDAIIIMPTGKLLK 96 (323)
Q Consensus 26 ~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~---------~~~~~~Q~~~i~~~~~~~~~lv~~pTgs~l~ 96 (323)
+...+.+.++....-++++.-||+|||.++...|.. -|+ ++|+.+-.-.+.+- ...
T Consensus 268 ~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~E-aGytk~gk~IgcTQPRRVAAmSVAaR--------------VA~ 332 (902)
T KOG0923|consen 268 PYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYE-AGYTKGGKKIGCTQPRRVAAMSVAAR--------------VAE 332 (902)
T ss_pred hhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHh-cccccCCceEeecCcchHHHHHHHHH--------------HHH
Confidence 344456777777777888889999999998888876 233 33332222211110 233
Q ss_pred hcCeee-----------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHH
Q psy4493 97 KKKICL-----------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSI 165 (323)
Q Consensus 97 ~~~i~l-----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~ 165 (323)
.+|+.| .....+.-+-++|-++|++ +++.. ..+...+++||||||.-.-+- --.+..+..
T Consensus 333 EMgvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlR-----EfL~e-pdLasYSViiiDEAHERTL~T---DILfgLvKD 403 (902)
T KOG0923|consen 333 EMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLR-----EFLSE-PDLASYSVIIVDEAHERTLHT---DILFGLVKD 403 (902)
T ss_pred HhCcccccccceEEEeccccCcceeeeeecchhHHH-----HHhcc-ccccceeEEEeehhhhhhhhh---hHHHHHHHH
Confidence 445543 3334556677999999985 23333 345678899999999542210 011233445
Q ss_pred HHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCc--eeEEEecCCchhHHHHHHHHHHHhhcCCCcEE
Q psy4493 166 LKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNL--FYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243 (323)
Q Consensus 166 l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i 243 (323)
+....|+.+++..|||++.+ .+..++ .+.-++..+..+-++ +|...+..+.....+..++++... .+.+-+|
T Consensus 404 Iar~RpdLKllIsSAT~DAe---kFS~fF--DdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~t-qp~GDIL 477 (902)
T KOG0923|consen 404 IARFRPDLKLLISSATMDAE---KFSAFF--DDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLT-QPLGDIL 477 (902)
T ss_pred HHhhCCcceEEeeccccCHH---HHHHhc--cCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEec-cCCccEE
Confidence 55556899999999999964 455664 444455555544443 333333223333333333333221 2567899
Q ss_pred EEeCChhHHHHHHHHHHhC---------CCeEEeecCCCCCCc------------------ceeeecccccCCccEEEEc
Q psy4493 244 IYTTSIKECEDLREELRNR---------GLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHH 296 (323)
Q Consensus 244 VF~~s~~~~~~l~~~L~~~---------~~~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~ 296 (323)
||-...++.+...+.|.+. .+-+..+|++|+.+. |+.++..+.+++|.+||.-
T Consensus 478 VFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDp 557 (902)
T KOG0923|consen 478 VFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDP 557 (902)
T ss_pred EEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecC
Confidence 9999998887777777653 234788999999887 9999999999999999987
Q ss_pred cCCC------------------CHhHHHHHhccCCCCCCCCCC
Q psy4493 297 CLSK------------------SMENFYQVSIAFGLGKHSFRS 321 (323)
Q Consensus 297 ~~p~------------------~~~~~~qr~GR~gR~g~~g~~ 321 (323)
|+.+ |..+-.||+|||||.| +|+|
T Consensus 558 Gf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKC 599 (902)
T KOG0923|consen 558 GFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKC 599 (902)
T ss_pred ccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCce
Confidence 6543 6678899999999976 5777
No 103
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.76 E-value=2.9e-17 Score=136.21 Aligned_cols=167 Identities=17% Similarity=0.168 Sum_probs=117.0
Q ss_pred CCCCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHH--h
Q psy4493 3 PNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIA--L 80 (323)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~--~ 80 (323)
.+++++.++.+.|.+ +++..+++.|.++++.+..++++++.+|||.|||..+...+... +... .
T Consensus 2 ~~~~~~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~-------------~~~~~~~ 67 (203)
T cd00268 2 EELGLSPELLRGIYA-LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEK-------------LDPSPKK 67 (203)
T ss_pred CcCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHH-------------HHhhccc
Confidence 468889888888888 88999999999999999999999999999999997643333221 1111 1
Q ss_pred cCCcEEEEccchhh-------hhh----cCeee-------------eccCCCeeEEEEcccccccchhHHHHHHH-HHhh
Q psy4493 81 LKKDAIIIMPTGKL-------LKK----KKICL-------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKA 135 (323)
Q Consensus 81 ~~~~~lv~~pTgs~-------l~~----~~i~l-------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~ 135 (323)
.+..+++++||... +.. .++.. .....+.+|+|+||+++.. .++. ....
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~------~l~~~~~~~ 141 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLD------LLERGKLDL 141 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHH------HHHcCCCCh
Confidence 34568999999981 111 13331 1112377899999999864 2222 2445
Q ss_pred CCcceEEEeccccccccCCCchHHHHhHHHHHhhC-CCCCEEEEeecCChhHHHHHHHHh
Q psy4493 136 GCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF-PDVPILGLTATATTKVMLDVQKML 194 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l 194 (323)
.+++++|+||||.+.+. .+...+.. +.... ++.+++++|||+++...+.+..++
T Consensus 142 ~~l~~lIvDE~h~~~~~--~~~~~~~~---~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~ 196 (203)
T cd00268 142 SKVKYLVLDEADRMLDM--GFEDQIRE---ILKLLPKDRQTLLFSATMPKEVRDLARKFL 196 (203)
T ss_pred hhCCEEEEeChHHhhcc--ChHHHHHH---HHHhCCcccEEEEEeccCCHHHHHHHHHHC
Confidence 68899999999998763 35444433 33333 378999999999987766555654
No 104
>KOG0920|consensus
Probab=99.74 E-value=2.1e-16 Score=151.49 Aligned_cols=287 Identities=18% Similarity=0.155 Sum_probs=184.4
Q ss_pred cHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEE
Q psy4493 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAII 87 (323)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv 87 (323)
+++..+.+..+...+-+. .+.+.+.++..+.-+++..-||-|||.++...+.+.. +..- ...++++
T Consensus 159 s~~~~~~~~~R~~LPa~~-~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~------------~~~~-~~~~Iic 224 (924)
T KOG0920|consen 159 SESYKEMLRFRESLPAYK-MRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEA------------IESG-AACNIIC 224 (924)
T ss_pred hhHHHHHHHHHHhCccHH-HHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHH------------HhcC-CCCeEEe
Confidence 445566666665544433 3667778777777788888999999999988877631 1111 2233455
Q ss_pred Eccchh-------hh-hh--------cCee--e-eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEecccc
Q psy4493 88 IMPTGK-------LL-KK--------KKIC--L-MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHC 148 (323)
Q Consensus 88 ~~pTgs-------~l-~~--------~~i~--l-~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~ 148 (323)
--|-+- .+ .+ .|.. + ........+.+||.+.|++ .+.....+..+..+|+||+|.
T Consensus 225 TQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr------~L~~~~~l~~vthiivDEVHE 298 (924)
T KOG0920|consen 225 TQPRRISAISVAERVAKERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLR------RLQSDPTLSGVTHIIVDEVHE 298 (924)
T ss_pred cCCchHHHHHHHHHHHHHhccccCCeeeEEEeeecccCCceeEEEecHHHHHH------HhccCcccccCceeeeeeEEE
Confidence 555432 00 01 1111 2 3334458899999999985 444445567899999999997
Q ss_pred ccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCC------------------
Q psy4493 149 CSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPN------------------ 210 (323)
Q Consensus 149 ~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~------------------ 210 (323)
-.... +|-..+ +..+....|+.++|+||||+..+. +..+++..+...+.....+-.
T Consensus 299 R~i~~-DflLi~--lk~lL~~~p~LkvILMSAT~dae~---fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~ 372 (924)
T KOG0920|consen 299 RSINT-DFLLIL--LKDLLPRNPDLKVILMSATLDAEL---FSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDD 372 (924)
T ss_pred ccCCc-ccHHHH--HHHHhhhCCCceEEEeeeecchHH---HHHHhCCCceEeecCCCcchHHHHHHHHHHHhccccccc
Confidence 65432 333322 344555568999999999999543 456666433222221100000
Q ss_pred ceeEEEe------------cCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhC-------CCeEEeecC
Q psy4493 211 LFYEVRI------------KPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-------GLRVSAYHA 271 (323)
Q Consensus 211 ~~~~~~~------------~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~-------~~~v~~~h~ 271 (323)
-.+.... ..+...+.+..+.+++.+....+.+|||-+...++..+.+.|... .+-+..+|+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs 452 (924)
T KOG0920|consen 373 SARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHS 452 (924)
T ss_pred ccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccc
Confidence 0000000 001223455566666665545789999999999999999999752 256788999
Q ss_pred CCCCCc------------------ceeeecccccCCccEEEEccCCC------------------CHhHHHHHhccCCCC
Q psy4493 272 KLESNV------------------SIAFGLGIDKPNVRFVIHHCLSK------------------SMENFYQVSIAFGLG 315 (323)
Q Consensus 272 ~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~p~------------------~~~~~~qr~GR~gR~ 315 (323)
.|+..+ |+.++.+|.++||-+||..+.-+ |...-.||.|||||.
T Consensus 453 ~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv 532 (924)
T KOG0920|consen 453 SIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV 532 (924)
T ss_pred cCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc
Confidence 999977 99999999999999999866432 445679999999995
Q ss_pred CCCCCC
Q psy4493 316 KHSFRS 321 (323)
Q Consensus 316 g~~g~~ 321 (323)
+.|.|
T Consensus 533 -~~G~c 537 (924)
T KOG0920|consen 533 -RPGIC 537 (924)
T ss_pred -cCCee
Confidence 44555
No 105
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=5.3e-16 Score=148.57 Aligned_cols=101 Identities=16% Similarity=0.093 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHHHh-hcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc----------------ceeeecc
Q psy4493 222 QKDCLDELADLMSR-RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLG 284 (323)
Q Consensus 222 ~~~~~~~l~~~l~~-~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~----------------T~~~~~G 284 (323)
...+...+.+.+.. +..++|+||-|.|+...+.++..|.+.|+....+++.-...| |+.++||
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~AG~~g~VTIATNmAGRG 629 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAGAGKLGAVTVATNMAGRG 629 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHHhcCCCCcEEEeeccccCC
Confidence 35677776666543 447899999999999999999999999999888888755555 9999999
Q ss_pred cccCC--------ccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 285 IDKPN--------VRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 285 id~~~--------v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
.|+.= --+||....|.|...-.|-.||+||.|.+|.|.
T Consensus 630 TDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~ 675 (970)
T PRK12899 630 TDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAK 675 (970)
T ss_pred cccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCcee
Confidence 99951 228899999999999999999999999999886
No 106
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.73 E-value=7.9e-16 Score=146.22 Aligned_cols=257 Identities=20% Similarity=0.202 Sum_probs=170.1
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEc
Q psy4493 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIM 89 (323)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~ 89 (323)
+..+.+++..|. .++..|+.....++.|+++.+++|||.|||..... -++-...+|+.+.++.
T Consensus 70 ~~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~----------------~sl~~a~kgkr~yii~ 132 (1187)
T COG1110 70 EFEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLL----------------MSLYLAKKGKRVYIIV 132 (1187)
T ss_pred HHHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHH----------------HHHHHHhcCCeEEEEe
Confidence 456667777777 66778999999999999999999999999954221 1122245789999999
Q ss_pred cchh-------hhhhc----C-ee--e----------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcc
Q psy4493 90 PTGK-------LLKKK----K-IC--L----------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLA 139 (323)
Q Consensus 90 pTgs-------~l~~~----~-i~--l----------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~ 139 (323)
||.+ .+.++ + .. + ....+++||+|+|.+.|.+ .+ +.+.+ -+++
T Consensus 133 PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k--~~-e~L~~----~kFd 205 (1187)
T COG1110 133 PTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSK--RF-EELSK----LKFD 205 (1187)
T ss_pred cCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHh--hH-HHhcc----cCCC
Confidence 9999 22222 1 11 1 4557889999999888754 22 22222 3799
Q ss_pred eEEEeccccccccCC---------CchHH--------------H------HhHHHHH---------hhCCCCCEEEEeec
Q psy4493 140 RIAIDEVHCCSSWGH---------DFRPD--------------Y------QYLSILK---------TMFPDVPILGLTAT 181 (323)
Q Consensus 140 ~vVvDEah~~~~~~~---------~~r~~--------------~------~~l~~l~---------~~~~~~~~i~lSAT 181 (323)
+++||.+|.++..+. +|... + ..+.... ......+++..|||
T Consensus 206 fifVDDVDA~LkaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSAT 285 (1187)
T COG1110 206 FIFVDDVDAILKASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSAT 285 (1187)
T ss_pred EEEEccHHHHHhccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeecc
Confidence 999999997765432 11111 0 0011110 11124578999999
Q ss_pred CChhH--HHHHHHHhCCCCcEEEecCCCCCCceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCC---hhHHHHHH
Q psy4493 182 ATTKV--MLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTS---IKECEDLR 256 (323)
Q Consensus 182 ~~~~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s---~~~~~~l~ 256 (323)
..+.. ...+...||+.-.. ......|+.-.+... ....++.+++++ -+.-+|||++. ++.+++++
T Consensus 286 g~~rg~R~~LfReLlgFevG~---~~~~LRNIvD~y~~~-----~~~e~~~elvk~--lG~GgLIfV~~d~G~e~aeel~ 355 (1187)
T COG1110 286 GKPRGSRLKLFRELLGFEVGS---GGEGLRNIVDIYVES-----ESLEKVVELVKK--LGDGGLIFVPIDYGREKAEELA 355 (1187)
T ss_pred CCCCCchHHHHHHHhCCccCc---cchhhhheeeeeccC-----ccHHHHHHHHHH--hCCCeEEEEEcHHhHHHHHHHH
Confidence 87653 24455666654211 111122221111111 345567777765 34578999999 89999999
Q ss_pred HHHHhCCCeEEeecCCCCCC-c----------------ceeeecccccCC-ccEEEEccCCC
Q psy4493 257 EELRNRGLRVSAYHAKLESN-V----------------SIAFGLGIDKPN-VRFVIHHCLSK 300 (323)
Q Consensus 257 ~~L~~~~~~v~~~h~~~~~~-~----------------T~~~~~Gid~~~-v~~Vi~~~~p~ 300 (323)
++|+++|+++..+|++-... + ..++.||+|.|+ ++++|.+|.|+
T Consensus 356 e~Lr~~Gi~a~~~~a~~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 356 EYLRSHGINAELIHAEKEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred HHHHhcCceEEEeeccchhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 99999999999999863111 1 789999999997 78999999995
No 107
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.72 E-value=5.1e-16 Score=147.16 Aligned_cols=139 Identities=16% Similarity=0.144 Sum_probs=101.8
Q ss_pred CCCCChhHHHHHHHHhcC----CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh---
Q psy4493 21 LTDFRPNQLAAINIALLK----KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--- 93 (323)
Q Consensus 21 ~~~~~~~Q~~~~~~~~~~----~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--- 93 (323)
+..+.+.|..+++.+... +..++...||+|||+.+..++.. .+.+||.+|+++|..+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~----------------~L~~GkqvLvLVPEI~Ltp 259 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAK----------------VLAQGKQVLVLVPEIALTP 259 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHH----------------HHHcCCEEEEEeccccchH
Confidence 356778899999988765 56888899999999998888765 2568999999999998
Q ss_pred ----hhh-hcCee-------e----------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccc
Q psy4493 94 ----LLK-KKKIC-------L----------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 94 ----~l~-~~~i~-------l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~ 151 (323)
.+. ..|.+ | ....+..+|+|+|=.-+ |.. +.++++|||||=|.-.-
T Consensus 260 q~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-----F~P-------f~~LGLIIvDEEHD~sY 327 (730)
T COG1198 260 QLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-----FLP-------FKNLGLIIVDEEHDSSY 327 (730)
T ss_pred HHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-----cCc-------hhhccEEEEeccccccc
Confidence 111 12222 1 56678999999994332 222 25899999999996641
Q ss_pred -cCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHH
Q psy4493 152 -WGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVM 187 (323)
Q Consensus 152 -~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~ 187 (323)
..+..|.....++.++....++++|+-|||++-+..
T Consensus 328 Kq~~~prYhARdvA~~Ra~~~~~pvvLgSATPSLES~ 364 (730)
T COG1198 328 KQEDGPRYHARDVAVLRAKKENAPVVLGSATPSLESY 364 (730)
T ss_pred cCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCCHHHH
Confidence 112344455667778888889999999999997653
No 108
>KOG0924|consensus
Probab=99.71 E-value=4.2e-16 Score=142.11 Aligned_cols=263 Identities=15% Similarity=0.117 Sum_probs=161.0
Q ss_pred HHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHh-------cCCCCCCCcchHHHHHHHhcCCcEEEEccchhhhhhcCe
Q psy4493 28 QLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKS-------KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKI 100 (323)
Q Consensus 28 Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~-------~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs~l~~~~i 100 (323)
+.+.++.+-.+.-++++.-||+|||.++...|.. ..|+++|+.+-.-.+..- .-.++|+
T Consensus 361 R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkr--------------Va~EM~~ 426 (1042)
T KOG0924|consen 361 RDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKR--------------VAEEMGV 426 (1042)
T ss_pred HHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHH--------------HHHHhCC
Confidence 3355566666777888889999999999887754 123444443322211110 1122333
Q ss_pred ee-----------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhh
Q psy4493 101 CL-----------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169 (323)
Q Consensus 101 ~l-----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~ 169 (323)
.| .-...+..|-++|-+.|++ +.+.. ..+.+.++||+||||.-.-. .--.+..+......
T Consensus 427 ~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLr-----EsL~d-~~L~kYSviImDEAHERslN---tDilfGllk~~lar 497 (1042)
T KOG0924|consen 427 TLGDTVGYSIRFEDVTSEDTKIKYMTDGILLR-----ESLKD-RDLDKYSVIIMDEAHERSLN---TDILFGLLKKVLAR 497 (1042)
T ss_pred ccccccceEEEeeecCCCceeEEEeccchHHH-----HHhhh-hhhhheeEEEechhhhcccc---hHHHHHHHHHHHHh
Confidence 31 3334567788999999984 22222 12347889999999965421 11122334444455
Q ss_pred CCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecCCchhHHHHHHH-HHHHhhc--CCCcEEEEe
Q psy4493 170 FPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELA-DLMSRRF--RNQSGIIYT 246 (323)
Q Consensus 170 ~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~--~~~~~iVF~ 246 (323)
..+.++|..|||+.. +.+..++|..+...+.....+-.+.|. ..+-++-++..+ +.+.-+. ..+-+|||.
T Consensus 498 RrdlKliVtSATm~a---~kf~nfFgn~p~f~IpGRTyPV~~~~~----k~p~eDYVeaavkq~v~Ihl~~~~GdilIfm 570 (1042)
T KOG0924|consen 498 RRDLKLIVTSATMDA---QKFSNFFGNCPQFTIPGRTYPVEIMYT----KTPVEDYVEAAVKQAVQIHLSGPPGDILIFM 570 (1042)
T ss_pred hccceEEEeeccccH---HHHHHHhCCCceeeecCCccceEEEec----cCchHHHHHHHHhhheEeeccCCCCCEEEec
Confidence 568999999999985 456778773332233333323333322 222233333333 2222222 346789999
Q ss_pred CChhHHHHHH----HHHHhC------CCeEEeecCCCCCCc------------------ceeeecccccCCccEEEEccC
Q psy4493 247 TSIKECEDLR----EELRNR------GLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCL 298 (323)
Q Consensus 247 ~s~~~~~~l~----~~L~~~------~~~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~ 298 (323)
...+..+-.+ +.|.+. ++.|..+++.|+.+- |++++..+.+|.+.+||..|+
T Consensus 571 tGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy 650 (1042)
T KOG0924|consen 571 TGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGY 650 (1042)
T ss_pred CCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCc
Confidence 8876554444 444332 678899999998775 999999999999999998774
Q ss_pred C------------------CCHhHHHHHhccCCCCCCCCCC
Q psy4493 299 S------------------KSMENFYQVSIAFGLGKHSFRS 321 (323)
Q Consensus 299 p------------------~~~~~~~qr~GR~gR~g~~g~~ 321 (323)
. .|...--||.|||||.| +|.|
T Consensus 651 ~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~c 690 (1042)
T KOG0924|consen 651 CKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTC 690 (1042)
T ss_pred eeeeecccccccceeEEEechhccchhhccccCCCC-Ccce
Confidence 4 36667899999999976 4655
No 109
>KOG0926|consensus
Probab=99.71 E-value=1.8e-16 Score=146.71 Aligned_cols=226 Identities=14% Similarity=0.134 Sum_probs=130.7
Q ss_pred HhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCC-------------CCCcchHHHHHHHhcCC
Q psy4493 17 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLT-------------DFRPNQLAAINIALLKK 83 (323)
Q Consensus 17 ~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~-------------~~~~~Q~~~i~~~~~~~ 83 (323)
.+...+-+-.+| +.++++..+.-+++..-||+|||.++..-|.. -||. +|+.+-.-++..--.
T Consensus 251 sR~~LPI~aeEq-~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYE-AGf~s~~~~~~gmIGITqPRRVAaiamAkRVa-- 326 (1172)
T KOG0926|consen 251 SRLDLPIVAEEQ-RIMEAINENPVVIICGETGSGKTTQVPQFLYE-AGFASEQSSSPGMIGITQPRRVAAIAMAKRVA-- 326 (1172)
T ss_pred HHhcCchhHHHH-HHHHHhhcCCeEEEecCCCCCccccchHHHHH-cccCCccCCCCCeeeecCchHHHHHHHHHHHH--
Confidence 344444444444 67888887777888889999999999988866 2443 222222111110000
Q ss_pred cEEEEccchhhhhhcC--ee--e---eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCc
Q psy4493 84 DAIIIMPTGKLLKKKK--IC--L---MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDF 156 (323)
Q Consensus 84 ~~lv~~pTgs~l~~~~--i~--l---~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~ 156 (323)
..+...| +. + .....+..|.++|-+.|++ .+..-+.+.+.+.||+||||.-+-..+-.
T Consensus 327 ---------~EL~~~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLr------Ei~~DflL~kYSvIIlDEAHERSvnTDIL 391 (1172)
T KOG0926|consen 327 ---------FELGVLGSEVSYQIRFDGTIGEDTSIKFMTDGVLLR------EIENDFLLTKYSVIILDEAHERSVNTDIL 391 (1172)
T ss_pred ---------HHhccCccceeEEEEeccccCCCceeEEecchHHHH------HHHHhHhhhhceeEEechhhhccchHHHH
Confidence 0111111 11 1 3456678999999999985 44444555688999999999654311111
Q ss_pred hHHHHhHHHHHhhCC-------CCCEEEEeecCChhHHHHHHHHhCCCCcE-EEecCCCCCCceeEEEecCCchhHHHHH
Q psy4493 157 RPDYQYLSILKTMFP-------DVPILGLTATATTKVMLDVQKMLQIEDCV-VIKAPFNRPNLFYEVRIKPAAQKDCLDE 228 (323)
Q Consensus 157 r~~~~~l~~l~~~~~-------~~~~i~lSAT~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (323)
-.-+.++-.|++... ..+.|+||||+--.+..+-.+.+.+..|. .+.....+-.+++.-.-..+...+.+.+
T Consensus 392 iGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrK 471 (1172)
T KOG0926|consen 392 IGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRK 471 (1172)
T ss_pred HHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHH
Confidence 111222333443331 34689999998754322223444444442 2223333444444433333334455555
Q ss_pred HHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhC
Q psy4493 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNR 262 (323)
Q Consensus 229 l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~ 262 (323)
...+-+ ..+.+.+|||+....++..+++.|++.
T Consensus 472 tc~IH~-kLP~G~ILVFvTGQqEV~qL~~kLRK~ 504 (1172)
T KOG0926|consen 472 TCKIHK-KLPPGGILVFVTGQQEVDQLCEKLRKR 504 (1172)
T ss_pred HHHHhh-cCCCCcEEEEEeChHHHHHHHHHHHhh
Confidence 555544 457889999999999999999999874
No 110
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.70 E-value=2.1e-16 Score=147.77 Aligned_cols=261 Identities=17% Similarity=0.200 Sum_probs=157.5
Q ss_pred CCCChhHHHHHHHHh----cCC-CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhc---CCcEEEEccchh
Q psy4493 22 TDFRPNQLAAINIAL----LKK-DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL---KKDAIIIMPTGK 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~----~~~-~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~---~~~~lv~~pTgs 93 (323)
..+|+.|..+++.+. +++ .++++|.||.|||--.+..+-. +++ -|++|.++-..+
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~r-----------------L~r~~~~KRVLFLaDR~~ 226 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDR-----------------LIKSGWVKRVLFLADRNA 226 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHH-----------------HHhcchhheeeEEechHH
Confidence 567899999887553 333 3899999999999554444433 222 267899998888
Q ss_pred hhh-------hc---Cee---e--eccCCCeeEEEEcccccccchhHHHHHHH------HHhhCCcceEEEecccccccc
Q psy4493 94 LLK-------KK---KIC---L--MTESSSLKLLYVSPEKLAKSKSFMTKLQK------MYKAGCLARIAIDEVHCCSSW 152 (323)
Q Consensus 94 ~l~-------~~---~i~---l--~~~~~~~~vii~Tp~~l~~~~~~~~~l~~------~~~~~~v~~vVvDEah~~~~~ 152 (323)
... .. +-. + ......++|.++|-+++.. .++. .+..+.+++|||||||+=.-
T Consensus 227 Lv~QA~~af~~~~P~~~~~n~i~~~~~~~s~~i~lsTyqt~~~------~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~- 299 (875)
T COG4096 227 LVDQAYGAFEDFLPFGTKMNKIEDKKGDTSSEIYLSTYQTMTG------RIEQKEDEYRRFGPGFFDLIVIDEAHRGIY- 299 (875)
T ss_pred HHHHHHHHHHHhCCCccceeeeecccCCcceeEEEeehHHHHh------hhhccccccccCCCCceeEEEechhhhhHH-
Confidence 111 11 111 1 2233457999999888864 3222 24455689999999994321
Q ss_pred CCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHh-CCC------------------CcEEEecCCCCCCcee
Q psy4493 153 GHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKML-QIE------------------DCVVIKAPFNRPNLFY 213 (323)
Q Consensus 153 ~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l-~~~------------------~~~~~~~~~~~~~~~~ 213 (323)
..+. .+..++ +.-.+++|||+......+-..++ |.+ ++..+.+......+.+
T Consensus 300 -----~~~~---~I~dYF-dA~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~ 370 (875)
T COG4096 300 -----SEWS---SILDYF-DAATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKP 370 (875)
T ss_pred -----hhhH---HHHHHH-HHHHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCc
Confidence 1112 233333 33345569998875544434455 221 1111111111111110
Q ss_pred EEE---------------------ec------CCchhHHHHHHHHHHHhhc---CCCcEEEEeCChhHHHHHHHHHHhC-
Q psy4493 214 EVR---------------------IK------PAAQKDCLDELADLMSRRF---RNQSGIIYTTSIKECEDLREELRNR- 262 (323)
Q Consensus 214 ~~~---------------------~~------~~~~~~~~~~l~~~l~~~~---~~~~~iVF~~s~~~~~~l~~~L~~~- 262 (323)
.-. .. .....-....+.++++... .-+||||||.+..+|+.+.+.|.+.
T Consensus 371 ~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~y 450 (875)
T COG4096 371 DAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEY 450 (875)
T ss_pred CccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhC
Confidence 000 00 0001111222344444211 1479999999999999999999874
Q ss_pred ----CCeEEeecCCCCCCc------------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCC
Q psy4493 263 ----GLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLG 315 (323)
Q Consensus 263 ----~~~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~ 315 (323)
|--+..+.++-...+ .+.+..|||+|.|.++|.+..-.|...|.||+||+-|.
T Consensus 451 pe~~~~~a~~IT~d~~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 451 PEYNGRYAMKITGDAEQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred ccccCceEEEEeccchhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 233555555544433 79999999999999999999999999999999999886
No 111
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.69 E-value=8.2e-17 Score=129.46 Aligned_cols=138 Identities=27% Similarity=0.284 Sum_probs=96.4
Q ss_pred ChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCC--cEEEEccchh-------hh
Q psy4493 25 RPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKK--DAIIIMPTGK-------LL 95 (323)
Q Consensus 25 ~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~--~~lv~~pTgs-------~l 95 (323)
.|.|.++++.+..++++++.+|||+|||..+...+ +..+.+++ .+++++|+.+ .+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~----------------l~~~~~~~~~~~lii~P~~~l~~q~~~~~ 64 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPA----------------LNRLQEGKDARVLIIVPTRALAEQQFERL 64 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHH----------------HHHHHTTSSSEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHH----------------HhhhccCCCceEEEEeecccccccccccc
Confidence 37899999999999999999999999997754443 33344444 7999999999 11
Q ss_pred hh----cCee---e-----------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceEEEeccccccccCCCc
Q psy4493 96 KK----KKIC---L-----------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARIAIDEVHCCSSWGHDF 156 (323)
Q Consensus 96 ~~----~~i~---l-----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~vVvDEah~~~~~~~~~ 156 (323)
.. .+++ + ......++|+|+||+++.. .+.. .....+++++|+||+|.+..+ .+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~------~~~~~~~~~~~~~~iViDE~h~l~~~--~~ 136 (169)
T PF00270_consen 65 RKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLD------LISNGKINISRLSLIVIDEAHHLSDE--TF 136 (169)
T ss_dssp HHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHH------HHHTTSSTGTTESEEEEETHHHHHHT--TH
T ss_pred cccccccccccccccccccccccccccccccccccccCcchhhc------cccccccccccceeeccCcccccccc--cH
Confidence 11 1122 1 0112468999999999874 3332 113346999999999999885 36
Q ss_pred hHHHHhHHHHHhhCCCCCEEEEeecCChhH
Q psy4493 157 RPDYQYLSILKTMFPDVPILGLTATATTKV 186 (323)
Q Consensus 157 r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 186 (323)
+..+..+.......++.+++++|||+++.+
T Consensus 137 ~~~~~~i~~~~~~~~~~~~i~~SAT~~~~~ 166 (169)
T PF00270_consen 137 RAMLKSILRRLKRFKNIQIILLSATLPSNV 166 (169)
T ss_dssp HHHHHHHHHHSHTTTTSEEEEEESSSTHHH
T ss_pred HHHHHHHHHHhcCCCCCcEEEEeeCCChhH
Confidence 666656544433344789999999999443
No 112
>KOG4150|consensus
Probab=99.69 E-value=1.9e-16 Score=141.74 Aligned_cols=286 Identities=13% Similarity=0.038 Sum_probs=178.5
Q ss_pred HhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhc--CCcEEEEccchh-
Q psy4493 17 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL--KKDAIIIMPTGK- 93 (323)
Q Consensus 17 ~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~--~~~~lv~~pTgs- 93 (323)
+....+.+-.+|.++++..-.|+..+....|..||+.+.-.+ ++..++. ..+.++..||.+
T Consensus 280 ~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~----------------s~~~~~~~~~s~~~~~~~~~~~ 343 (1034)
T KOG4150|consen 280 NKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSG----------------SRKFQTLCHATNSLLPSEMVEH 343 (1034)
T ss_pred hcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccc----------------hhhhhhcCcccceecchhHHHH
Confidence 334567788899999999999999999999999998553222 2222111 123344444443
Q ss_pred ----------------hhhhcCee----e------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccc
Q psy4493 94 ----------------LLKKKKIC----L------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVH 147 (323)
Q Consensus 94 ----------------~l~~~~i~----l------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah 147 (323)
.++..-+. + .-...+.+++++-|..+.. ..+...+....+.-...++++||+|
T Consensus 344 ~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s-~~L~~~~~~~~~~~~~~~~~~~~~~ 422 (1034)
T KOG4150|consen 344 LRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAIS-AALAKSLCYNVPVFEELCKDTNSCA 422 (1034)
T ss_pred hhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHH-HHhhhccccccHHHHHHHhccccee
Confidence 12221121 1 2234466788888887762 2222222221122245689999999
Q ss_pred cccc-cCCCchHHHHhHHHHHhhC---CCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecC----
Q psy4493 148 CCSS-WGHDFRPDYQYLSILKTMF---PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKP---- 219 (323)
Q Consensus 148 ~~~~-~~~~~r~~~~~l~~l~~~~---~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---- 219 (323)
...- .+.....++..|..+..-+ .+.+++-.+||+.... +......|+....++.....+..-...+...+
T Consensus 423 ~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~-~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P 501 (1034)
T KOG4150|consen 423 LYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRT-RLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPP 501 (1034)
T ss_pred eeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHH-HHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCC
Confidence 7753 2222233444444444433 3779999999987765 34566778887777765444333333333222
Q ss_pred ---CchhHHHHH----HHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhC----C----CeEEeecCCCCCCc-------
Q psy4493 220 ---AAQKDCLDE----LADLMSRRFRNQSGIIYTTSIKECEDLREELRNR----G----LRVSAYHAKLESNV------- 277 (323)
Q Consensus 220 ---~~~~~~~~~----l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~----~----~~v~~~h~~~~~~~------- 277 (323)
..+++++.. +.+++. .+-++|-||.+++-|+.+....++- + ..+..|.||.+.++
T Consensus 502 ~~~~~~~~~i~E~s~~~~~~i~---~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~ 578 (1034)
T KOG4150|consen 502 TSKSEKSSKVVEVSHLFAEMVQ---HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESD 578 (1034)
T ss_pred cchhhhhhHHHHHHHHHHHHHH---cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHH
Confidence 112333333 333333 6789999999999998776655431 1 02334445544444
Q ss_pred -----------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCCC
Q psy4493 278 -----------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSRY 323 (323)
Q Consensus 278 -----------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~ 323 (323)
|++++.|||+.+++.|++.++|.|+..+.|+.|||||..+.+-+.|
T Consensus 579 ~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavy 635 (1034)
T KOG4150|consen 579 LFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVY 635 (1034)
T ss_pred hhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEE
Confidence 9999999999999999999999999999999999999999876553
No 113
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.69 E-value=3e-16 Score=149.60 Aligned_cols=97 Identities=22% Similarity=0.247 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhh-cCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeeeccc
Q psy4493 225 CLDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGI 285 (323)
Q Consensus 225 ~~~~l~~~l~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~~Gi 285 (323)
.+..+.+.++.. .++.++||||+|++.++.+++.|.+.|+++..+|+++++.+ |+.+++|+
T Consensus 427 qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGf 506 (655)
T TIGR00631 427 QVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGL 506 (655)
T ss_pred hHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCe
Confidence 344555554432 26789999999999999999999999999999999988643 89999999
Q ss_pred ccCCccEEEEcc-----CCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 286 DKPNVRFVIHHC-----LSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 286 d~~~v~~Vi~~~-----~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+|++++||++| .|.+..+|+||+||+||. ..|+++
T Consensus 507 DiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi 547 (655)
T TIGR00631 507 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVI 547 (655)
T ss_pred eeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEE
Confidence 999999999998 799999999999999998 578765
No 114
>KOG0925|consensus
Probab=99.69 E-value=1.8e-15 Score=133.34 Aligned_cols=286 Identities=14% Similarity=0.149 Sum_probs=176.0
Q ss_pred CCCCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC
Q psy4493 3 PNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK 82 (323)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~ 82 (323)
.+.|++.++.++|+++...+.|.. +.+.++....+.-++++.-||+|||.++..++.... .+ ..
T Consensus 28 ~~~p~s~rY~~ilk~R~~LPvw~~-k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~------------~~---~~ 91 (699)
T KOG0925|consen 28 NGKPYSQRYYDILKKRRELPVWEQ-KEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYE------------LS---HL 91 (699)
T ss_pred CCCcCcHHHHHHHHHHhcCchHHh-HHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHH------------Hh---hc
Confidence 457899999999999998887544 556778888888888999999999998877765521 00 01
Q ss_pred CcEEEEccchh--------hhhhcCeee------eccCC-----CeeEEEEcccccccchhHHHHHHHHHhhCCcceEEE
Q psy4493 83 KDAIIIMPTGK--------LLKKKKICL------MTESS-----SLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAI 143 (323)
Q Consensus 83 ~~~lv~~pTgs--------~l~~~~i~l------~~~~~-----~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVv 143 (323)
+.+..--|-.- ...++++.| .+... +.=+-+||-++|++ +.... -..++.+++|+
T Consensus 92 ~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlr-----Eams~-p~l~~y~viiL 165 (699)
T KOG0925|consen 92 TGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLR-----EAMSD-PLLGRYGVIIL 165 (699)
T ss_pred cceeecCchHHHHHHHHHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHH-----HHhhC-cccccccEEEe
Confidence 12222222211 112233332 11111 11122445444442 12222 24568899999
Q ss_pred eccccccccCCCchH-HHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecC-CCCCCceeEEEecCCc
Q psy4493 144 DEVHCCSSWGHDFRP-DYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAP-FNRPNLFYEVRIKPAA 221 (323)
Q Consensus 144 DEah~~~~~~~~~r~-~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 221 (323)
||||.-.- ... .+..|+.+....|+.++|.+|||+.. ..+..+++..+ ++..+ .++-.+.|......+.
T Consensus 166 DeahERtl----ATDiLmGllk~v~~~rpdLk~vvmSatl~a---~Kfq~yf~n~P--ll~vpg~~PvEi~Yt~e~erDy 236 (699)
T KOG0925|consen 166 DEAHERTL----ATDILMGLLKEVVRNRPDLKLVVMSATLDA---EKFQRYFGNAP--LLAVPGTHPVEIFYTPEPERDY 236 (699)
T ss_pred chhhhhhH----HHHHHHHHHHHHHhhCCCceEEEeecccch---HHHHHHhCCCC--eeecCCCCceEEEecCCCChhH
Confidence 99995421 011 11234555555689999999999885 34566654433 33333 3333333332222333
Q ss_pred hhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhC---------CCeEEeecCCCCCCc---------------
Q psy4493 222 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR---------GLRVSAYHAKLESNV--------------- 277 (323)
Q Consensus 222 ~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~---------~~~v~~~h~~~~~~~--------------- 277 (323)
.+..+..++++-... ..+-++||....++.++.++.+.+. ..+|..+|....+.-
T Consensus 237 lEaairtV~qih~~e-e~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLyP~~qq~iFep~p~~~~~~~~Rk 315 (699)
T KOG0925|consen 237 LEAAIRTVLQIHMCE-EPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLYPAQQQRIFEPAPEKRNGAYGRK 315 (699)
T ss_pred HHHHHHHHHHHHhcc-CCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecCchhhccccCCCCcccCCCccce
Confidence 444455555554433 4678999999999888888877743 246777775333321
Q ss_pred ----ceeeecccccCCccEEEEccCC------------------CCHhHHHHHhccCCCCCCCCCC
Q psy4493 278 ----SIAFGLGIDKPNVRFVIHHCLS------------------KSMENFYQVSIAFGLGKHSFRS 321 (323)
Q Consensus 278 ----T~~~~~Gid~~~v~~Vi~~~~p------------------~~~~~~~qr~GR~gR~g~~g~~ 321 (323)
|+..+..+-++.|.+||.-|+. .|..+-.||.||+|| .++|+|
T Consensus 316 vVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragr-t~pGkc 380 (699)
T KOG0925|consen 316 VVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGR-TRPGKC 380 (699)
T ss_pred EEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccC-CCCCce
Confidence 8888999999999999987643 366788999999998 466776
No 115
>KOG0949|consensus
Probab=99.69 E-value=8.1e-16 Score=145.04 Aligned_cols=135 Identities=21% Similarity=0.192 Sum_probs=85.9
Q ss_pred hhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhc---CCcEEEEccchhhhhh-----
Q psy4493 26 PNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL---KKDAIIIMPTGKLLKK----- 97 (323)
Q Consensus 26 ~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~---~~~~lv~~pTgs~l~~----- 97 (323)
.||++.+...=.++.+++++||.+|||-.-. .+++..+. ..-++.++||-+....
T Consensus 514 ~WQ~elLDsvDr~eSavIVAPTSaGKTfisf-----------------Y~iEKVLResD~~VVIyvaPtKaLVnQvsa~V 576 (1330)
T KOG0949|consen 514 EWQRELLDSVDRNESAVIVAPTSAGKTFISF-----------------YAIEKVLRESDSDVVIYVAPTKALVNQVSANV 576 (1330)
T ss_pred HHHHHHhhhhhcccceEEEeeccCCceeccH-----------------HHHHHHHhhcCCCEEEEecchHHHhhhhhHHH
Confidence 4898888887788999999999999992211 33333433 2447999999991111
Q ss_pred ----------cCeee--------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHH
Q psy4493 98 ----------KKICL--------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPD 159 (323)
Q Consensus 98 ----------~~i~l--------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~ 159 (323)
.|+.+ ....-+++|+|+-|+.+.. ..........+..+++++|+||+|.+.....+
T Consensus 577 yaRF~~~t~~rg~sl~g~ltqEYsinp~nCQVLITvPecles--lLlspp~~q~~cerIRyiIfDEVH~iG~~ed~---- 650 (1330)
T KOG0949|consen 577 YARFDTKTFLRGVSLLGDLTQEYSINPWNCQVLITVPECLES--LLLSPPHHQKFCERIRYIIFDEVHLIGNEEDG---- 650 (1330)
T ss_pred HHhhccCccccchhhHhhhhHHhcCCchhceEEEEchHHHHH--HhcCchhhhhhhhcceEEEechhhhccccccc----
Confidence 12221 2223478999999998863 11111112234568999999999999753211
Q ss_pred HHhHHHHHhhCCCCCEEEEeecCChh
Q psy4493 160 YQYLSILKTMFPDVPILGLTATATTK 185 (323)
Q Consensus 160 ~~~l~~l~~~~~~~~~i~lSAT~~~~ 185 (323)
..+ ..+... -.++++++|||+.+.
T Consensus 651 l~~-Eqll~l-i~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 651 LLW-EQLLLL-IPCPFLVLSATIGNP 674 (1330)
T ss_pred hHH-HHHHHh-cCCCeeEEecccCCH
Confidence 111 112222 378999999999874
No 116
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=3.3e-16 Score=150.38 Aligned_cols=146 Identities=19% Similarity=0.224 Sum_probs=114.4
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEe-cCCchhHHHHHHHHHHHh-hcCCCcEEEEeCChhH
Q psy4493 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRI-KPAAQKDCLDELADLMSR-RFRNQSGIIYTTSIKE 251 (323)
Q Consensus 174 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~-~~~~~~~iVF~~s~~~ 251 (323)
++-|||+|+..+. .++.+.+++. ++..+.++|.++..... .-....+|+..|.+.+.. +..+.|+||||+|+..
T Consensus 535 kLaGMTGTA~te~-~Ef~~iY~L~---Vv~IPTnrP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~ 610 (1025)
T PRK12900 535 KLAGMTGTAETEA-SEFFEIYKLD---VVVIPTNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEV 610 (1025)
T ss_pred hhcccCCCChhHH-HHHHHHhCCc---EEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHH
Confidence 5778999987654 4455666554 44566777766533221 113356688888888864 3468999999999999
Q ss_pred HHHHHHHHHhCCCeEEeecCCCCCCc----------------ceeeecccccC---Ccc-----EEEEccCCCCHhHHHH
Q psy4493 252 CEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLGIDKP---NVR-----FVIHHCLSKSMENFYQ 307 (323)
Q Consensus 252 ~~~l~~~L~~~~~~v~~~h~~~~~~~----------------T~~~~~Gid~~---~v~-----~Vi~~~~p~~~~~~~q 307 (323)
++.++..|...|+++..+|+.....+ |++++||+|++ +|. +||+++.|.|...|.|
T Consensus 611 sE~Ls~~L~~~gI~h~vLnakq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Q 690 (1025)
T PRK12900 611 SETLSRMLRAKRIAHNVLNAKQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQ 690 (1025)
T ss_pred HHHHHHHHHHcCCCceeecCCHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHH
Confidence 99999999999999999998655444 99999999999 554 4599999999999999
Q ss_pred HhccCCCCCCCCCCCC
Q psy4493 308 VSIAFGLGKHSFRSRY 323 (323)
Q Consensus 308 r~GR~gR~g~~g~~~~ 323 (323)
++||+||.|.+|.|++
T Consensus 691 l~GRtGRqGdpGsS~f 706 (1025)
T PRK12900 691 LRGRAGRQGDPGESVF 706 (1025)
T ss_pred HhhhhhcCCCCcceEE
Confidence 9999999999998863
No 117
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=1.3e-14 Score=138.88 Aligned_cols=102 Identities=18% Similarity=0.095 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHHHh-hcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc----------------ceeeecc
Q psy4493 222 QKDCLDELADLMSR-RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLG 284 (323)
Q Consensus 222 ~~~~~~~l~~~l~~-~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~----------------T~~~~~G 284 (323)
..+|+..+.+.+.. +..++|+||||+|+..++.++..|...|+++..+|+++++.| |++++||
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~VtIATnmAGRG 510 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGAVTIATNMAGRG 510 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCcEEEecCCcCCC
Confidence 34667777766653 347899999999999999999999999999999999998877 9999999
Q ss_pred cccCC-------------------------------------ccEEEEccCCCCHhHHHHHhccCCCCCCCCCCCC
Q psy4493 285 IDKPN-------------------------------------VRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSRY 323 (323)
Q Consensus 285 id~~~-------------------------------------v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~ 323 (323)
+|+.= --+||-...+.|..-=.|-.||+||.|.+|.|.|
T Consensus 511 TDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f 586 (908)
T PRK13107 511 TDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRF 586 (908)
T ss_pred cceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeE
Confidence 99961 1288999999999999999999999999998863
No 118
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.65 E-value=6.4e-16 Score=118.70 Aligned_cols=99 Identities=26% Similarity=0.326 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhhc-CCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeeecc
Q psy4493 224 DCLDELADLMSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 284 (323)
Q Consensus 224 ~~~~~l~~~l~~~~-~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~~G 284 (323)
.+...+.+++.+.. +++++||||++.+.++.+++.|.+.+..+..+||+++..+ |+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 56777777777543 5789999999999999999999988889999999998766 9999999
Q ss_pred cccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 285 IDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 285 id~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+|+|.+++||.++.|++...++|++||++|.|+.|.+.
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~ 129 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAI 129 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEE
Confidence 99999999999999999999999999999999988764
No 119
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.65 E-value=1.2e-15 Score=146.29 Aligned_cols=96 Identities=19% Similarity=0.228 Sum_probs=81.6
Q ss_pred HHHHHHHHHhh-cCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeeecccc
Q psy4493 226 LDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGID 286 (323)
Q Consensus 226 ~~~l~~~l~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~~Gid 286 (323)
+..+.+.+... ..+.++||||+|++.|+.+++.|.+.|+++..+||++++.+ |+.+++|+|
T Consensus 432 ~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfd 511 (652)
T PRK05298 432 VDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLD 511 (652)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcc
Confidence 34444444422 25789999999999999999999999999999999988643 889999999
Q ss_pred cCCccEEEEccC-----CCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 287 KPNVRFVIHHCL-----SKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 287 ~~~v~~Vi~~~~-----p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+|++++||++|. |.+..+|+||+||+||. +.|+++
T Consensus 512 lp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i 551 (652)
T PRK05298 512 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVI 551 (652)
T ss_pred ccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEE
Confidence 999999999884 78999999999999996 678765
No 120
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.64 E-value=1.9e-14 Score=138.67 Aligned_cols=266 Identities=13% Similarity=0.095 Sum_probs=149.6
Q ss_pred CChhHHHHHHHHh----c------CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 24 FRPNQLAAINIAL----L------KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 24 ~~~~Q~~~~~~~~----~------~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
.|++|..+++.+. . .+..++.++||+|||..+..+...++ .......+++++|...
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~--------------~~~~~~~vl~lvdR~~ 304 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL--------------ELLKNPKVFFVVDRRE 304 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH--------------hhcCCCeEEEEECcHH
Confidence 6788988887653 2 24688999999999976665554421 1234567899999987
Q ss_pred -------hhhhcCee----------e--eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCc-ceEEEeccccccccC
Q psy4493 94 -------LLKKKKIC----------L--MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCL-ARIAIDEVHCCSSWG 153 (323)
Q Consensus 94 -------~l~~~~i~----------l--~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v-~~vVvDEah~~~~~~ 153 (323)
.+...+.. | ........|+|+|.+++.. .+...+.... ...- .+||+||||+...
T Consensus 305 L~~Q~~~~f~~~~~~~~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~--~~~~~~~~~~-~~~~~~lvIvDEaHrs~~-- 379 (667)
T TIGR00348 305 LDYQLMKEFQSLQKDCAERIESIAELKRLLEKDDGGIIITTIQKFDK--KLKEEEEKFP-VDRKEVVVIFDEAHRSQY-- 379 (667)
T ss_pred HHHHHHHHHHhhCCCCCcccCCHHHHHHHHhCCCCCEEEEEhHHhhh--hHhhhhhccC-CCCCCEEEEEEcCccccc--
Confidence 33333211 1 1123346899999999863 1111121111 1111 2799999996532
Q ss_pred CCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCC-CcEEEecC-------CCCCCceeEEEecCC----c
Q psy4493 154 HDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIE-DCVVIKAP-------FNRPNLFYEVRIKPA----A 221 (323)
Q Consensus 154 ~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~-~~~~~~~~-------~~~~~~~~~~~~~~~----~ 221 (323)
..+ ...++..+|+...+||||||-......-...++.. ...+...+ ....++.|....... .
T Consensus 380 ----~~~--~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~ 453 (667)
T TIGR00348 380 ----GEL--AKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRK 453 (667)
T ss_pred ----hHH--HHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChH
Confidence 122 12355677899999999999643111112222210 01111110 000111111111000 0
Q ss_pred ------------------h-------------------hHHHHHHHHHHHhh------cCCCcEEEEeCChhHHHHHHHH
Q psy4493 222 ------------------Q-------------------KDCLDELADLMSRR------FRNQSGIIYTTSIKECEDLREE 258 (323)
Q Consensus 222 ------------------~-------------------~~~~~~l~~~l~~~------~~~~~~iVF~~s~~~~~~l~~~ 258 (323)
. .+....+.+.+.++ ..+.+++|||.++..|..+++.
T Consensus 454 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~ 533 (667)
T TIGR00348 454 KLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNA 533 (667)
T ss_pred HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHH
Confidence 0 00011122222111 1248999999999999999999
Q ss_pred HHhC-----CCeEEeecCCCCCC----------------------------------c------ceeeecccccCCccEE
Q psy4493 259 LRNR-----GLRVSAYHAKLESN----------------------------------V------SIAFGLGIDKPNVRFV 293 (323)
Q Consensus 259 L~~~-----~~~v~~~h~~~~~~----------------------------------~------T~~~~~Gid~~~v~~V 293 (323)
|.+. +.....+++..+.+ . ++.+..|+|.|.++.+
T Consensus 534 l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tL 613 (667)
T TIGR00348 534 LDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTL 613 (667)
T ss_pred HHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceE
Confidence 8654 23344444432211 0 8999999999988887
Q ss_pred EEccCCCCHhHHHHHhccCCCC
Q psy4493 294 IHHCLSKSMENFYQVSIAFGLG 315 (323)
Q Consensus 294 i~~~~p~~~~~~~qr~GR~gR~ 315 (323)
+...+-++ -.++|.+||+.|.
T Consensus 614 yldKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 614 YLDKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred EEeccccc-cHHHHHHHHhccc
Confidence 76665455 4589999999993
No 121
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=5.9e-14 Score=131.54 Aligned_cols=146 Identities=22% Similarity=0.213 Sum_probs=112.2
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEe-cCCchhHHHHHHHHHHHh-hcCCCcEEEEeCChhH
Q psy4493 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRI-KPAAQKDCLDELADLMSR-RFRNQSGIIYTTSIKE 251 (323)
Q Consensus 174 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~-~~~~~~~iVF~~s~~~ 251 (323)
.+-+||+|+..+ .+++.+.+++. ++..+.++|..+..... .-....+++..+.+.+.. +..++|+||.|.|+..
T Consensus 364 kLsGMTGTa~t~-~~Ef~~iY~l~---Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~ 439 (764)
T PRK12326 364 TVCGMTGTAVAA-GEQLRQFYDLG---VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAE 439 (764)
T ss_pred hheeecCCChhH-HHHHHHHhCCc---EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHH
Confidence 356788887544 35566666655 44556667766433221 112356678887777654 3588999999999999
Q ss_pred HHHHHHHHHhCCCeEEeecCCCCCCc----------------ceeeecccccC----------Cc-----cEEEEccCCC
Q psy4493 252 CEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLGIDKP----------NV-----RFVIHHCLSK 300 (323)
Q Consensus 252 ~~~l~~~L~~~~~~v~~~h~~~~~~~----------------T~~~~~Gid~~----------~v-----~~Vi~~~~p~ 300 (323)
++.++..|.+.|++...+++.-...| |+.++||.|+. .| -+||-...+.
T Consensus 440 SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerhe 519 (764)
T PRK12326 440 SEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHR 519 (764)
T ss_pred HHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCc
Confidence 99999999999999999998866555 99999999996 12 2899999999
Q ss_pred CHhHHHHHhccCCCCCCCCCCCC
Q psy4493 301 SMENFYQVSIAFGLGKHSFRSRY 323 (323)
Q Consensus 301 ~~~~~~qr~GR~gR~g~~g~~~~ 323 (323)
|...-.|-.||+||.|.+|.+.|
T Consensus 520 SrRID~QLrGRaGRQGDpGss~f 542 (764)
T PRK12326 520 SERLDNQLRGRAGRQGDPGSSVF 542 (764)
T ss_pred hHHHHHHHhcccccCCCCCceeE
Confidence 99999999999999999998863
No 122
>KOG0385|consensus
Probab=99.56 E-value=1.5e-13 Score=127.22 Aligned_cols=265 Identities=18% Similarity=0.104 Sum_probs=174.9
Q ss_pred CCCCChhHHHHHHHH----hcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC-----CcEEEEccc
Q psy4493 21 LTDFRPNQLAAINIA----LLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK-----KDAIIIMPT 91 (323)
Q Consensus 21 ~~~~~~~Q~~~~~~~----~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~-----~~~lv~~pT 91 (323)
...+|++|.+.++.. ..+-+.++.--.|.|||-+.+..|- .+.+ .-.+|++|-
T Consensus 165 ~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~------------------yl~~~~~~~GPfLVi~P~ 226 (971)
T KOG0385|consen 165 GGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLG------------------YLKGRKGIPGPFLVIAPK 226 (971)
T ss_pred CCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHH------------------HHHHhcCCCCCeEEEeeH
Confidence 367899999976644 3566788888999999955444442 2222 337899998
Q ss_pred hh------hhhhcCeee------------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccc
Q psy4493 92 GK------LLKKKKICL------------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVH 147 (323)
Q Consensus 92 gs------~l~~~~i~l------------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah 147 (323)
.+ .+++.--.+ ....+..+|+|+|-+..++. .+.+++ -+++++||||||
T Consensus 227 StL~NW~~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d---k~~lk~----~~W~ylvIDEaH 299 (971)
T KOG0385|consen 227 STLDNWMNEFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD---KSFLKK----FNWRYLVIDEAH 299 (971)
T ss_pred hhHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh---HHHHhc----CCceEEEechhh
Confidence 87 222221110 23345889999999998752 334444 389999999999
Q ss_pred cccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEec-----------------------
Q psy4493 148 CCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKA----------------------- 204 (323)
Q Consensus 148 ~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~----------------------- 204 (323)
++-... ..|..+.+.+.....+++|+|+-.+-..++-..|++--|.++..
T Consensus 300 RiKN~~-------s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~L 372 (971)
T KOG0385|consen 300 RIKNEK-------SKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRL 372 (971)
T ss_pred hhcchh-------hHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHH
Confidence 996532 23445555666667889999965332222222221110000000
Q ss_pred ------------------------------C-----------------------------------------CCCCCcee
Q psy4493 205 ------------------------------P-----------------------------------------FNRPNLFY 213 (323)
Q Consensus 205 ------------------------------~-----------------------------------------~~~~~~~~ 213 (323)
+ .+.|.++.
T Consensus 373 h~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~ 452 (971)
T KOG0385|consen 373 HKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFD 452 (971)
T ss_pred HhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccC
Confidence 0 01111111
Q ss_pred EEEecC-----------CchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc-----
Q psy4493 214 EVRIKP-----------AAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----- 277 (323)
Q Consensus 214 ~~~~~~-----------~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~----- 277 (323)
.+.+.+ +.+...+++|+..++. .++++|||.+=...-..+..+..-+++..+-+-|.++.++
T Consensus 453 g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~--~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI 530 (971)
T KOG0385|consen 453 GAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKE--QGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAI 530 (971)
T ss_pred CCCCCCCCCcchHHHhcCcceehHHHHHHHHHh--CCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHH
Confidence 111100 0011233344444443 7899999998888888888888888999999999999888
Q ss_pred ----------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCC
Q psy4493 278 ----------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSF 319 (323)
Q Consensus 278 ----------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g 319 (323)
|-+.+.|||+-..+.||.||.-+++..=+|-.-||-|-|+..
T Consensus 531 ~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K 588 (971)
T KOG0385|consen 531 EAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKK 588 (971)
T ss_pred HhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcC
Confidence 999999999999999999999999999999999999999864
No 123
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.51 E-value=3e-13 Score=120.88 Aligned_cols=142 Identities=20% Similarity=0.138 Sum_probs=106.9
Q ss_pred CCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhH
Q psy4493 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKE 251 (323)
Q Consensus 172 ~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~ 251 (323)
..|+|..|||+.+.-.+ .-+..-.+.+..+.........+.+....-++.++.+.+.+. .+.+++|-+-|++.
T Consensus 386 ~~q~i~VSATPg~~E~e----~s~~~vveQiIRPTGLlDP~ievRp~~~QvdDL~~EI~~r~~---~~eRvLVTtLTKkm 458 (663)
T COG0556 386 IPQTIYVSATPGDYELE----QSGGNVVEQIIRPTGLLDPEIEVRPTKGQVDDLLSEIRKRVA---KNERVLVTTLTKKM 458 (663)
T ss_pred cCCEEEEECCCChHHHH----hccCceeEEeecCCCCCCCceeeecCCCcHHHHHHHHHHHHh---cCCeEEEEeehHHH
Confidence 56899999999874422 111111223333444344445566666666666666666555 67999999999999
Q ss_pred HHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeeecccccCCccEEEEccC-----CCCHhHHHHH
Q psy4493 252 CEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCL-----SKSMENFYQV 308 (323)
Q Consensus 252 ~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~-----p~~~~~~~qr 308 (323)
|+.+.++|.+.|+++..+|++...-| -+.+-+|+|+|.|..|..+|. ..|-.+++|-
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 99999999999999999999998887 889999999999999998874 4588899999
Q ss_pred hccCCCCCCCCCC
Q psy4493 309 SIAFGLGKHSFRS 321 (323)
Q Consensus 309 ~GR~gR~g~~g~~ 321 (323)
+|||+|-- .|+.
T Consensus 539 IGRAARN~-~Gkv 550 (663)
T COG0556 539 IGRAARNV-NGKV 550 (663)
T ss_pred HHHHhhcc-CCeE
Confidence 99999953 3444
No 124
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.50 E-value=1.7e-14 Score=100.33 Aligned_cols=60 Identities=25% Similarity=0.282 Sum_probs=56.3
Q ss_pred HHHHhCCCeEEeecCCCCCCc------------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCC
Q psy4493 257 EELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGK 316 (323)
Q Consensus 257 ~~L~~~~~~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g 316 (323)
+.|+..++++..+||+++..+ |+++++|+|+|++++||++++|++..+|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 357888999999999998888 999999999999999999999999999999999999987
No 125
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=3.6e-12 Score=122.45 Aligned_cols=102 Identities=18% Similarity=0.138 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHHHhh-cCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc----------------ceeeecc
Q psy4493 222 QKDCLDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLG 284 (323)
Q Consensus 222 ~~~~~~~l~~~l~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~----------------T~~~~~G 284 (323)
..+|+..+.+-+... ..++|+||-|.|++..+.++..|.+.|++..++++.....| |+.++||
T Consensus 431 ~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~~GaVTIATNMAGRG 510 (913)
T PRK13103 431 AEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGRPGALTIATNMAGRG 510 (913)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCCCCcEEEeccCCCCC
Confidence 356777777776643 47899999999999999999999999998888888766555 9999999
Q ss_pred cccC--------------------------------Cc-----cEEEEccCCCCHhHHHHHhccCCCCCCCCCCCC
Q psy4493 285 IDKP--------------------------------NV-----RFVIHHCLSKSMENFYQVSIAFGLGKHSFRSRY 323 (323)
Q Consensus 285 id~~--------------------------------~v-----~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~ 323 (323)
.|+. .| -+||-...+.|..-=.|-.||+||.|.+|.|.|
T Consensus 511 TDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f 586 (913)
T PRK13103 511 TDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRF 586 (913)
T ss_pred CCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEE
Confidence 9994 12 288999999999999999999999999998863
No 126
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.43 E-value=1.7e-11 Score=121.77 Aligned_cols=144 Identities=15% Similarity=0.163 Sum_probs=86.5
Q ss_pred CCEEEEeecCChh-HHHHHHHHhCCCCcEEEe---cCCC-CCCceeEEEe-cC----CchhHHHHHHHHHHHh--hcCCC
Q psy4493 173 VPILGLTATATTK-VMLDVQKMLQIEDCVVIK---APFN-RPNLFYEVRI-KP----AAQKDCLDELADLMSR--RFRNQ 240 (323)
Q Consensus 173 ~~~i~lSAT~~~~-~~~~i~~~l~~~~~~~~~---~~~~-~~~~~~~~~~-~~----~~~~~~~~~l~~~l~~--~~~~~ 240 (323)
..+|++|||++.. ..+.+.+.+|+.+..... .+++ ..+....+.. .+ ....+....+.+.+.+ ...++
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g 675 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSP 675 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 4578999999843 245667888987543222 2222 2223322221 11 1122233334433322 12567
Q ss_pred cEEEEeCChhHHHHHHHHHHh----CCCeEEeecCCCC-CCc----------------ceeeecccccCCcc--EEEEcc
Q psy4493 241 SGIIYTTSIKECEDLREELRN----RGLRVSAYHAKLE-SNV----------------SIAFGLGIDKPNVR--FVIHHC 297 (323)
Q Consensus 241 ~~iVF~~s~~~~~~l~~~L~~----~~~~v~~~h~~~~-~~~----------------T~~~~~Gid~~~v~--~Vi~~~ 297 (323)
++|||++|.+..+.+++.|.. .++.+ +..+.. ..+ |+.+++|||+|+.. .||..+
T Consensus 676 ~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~ 753 (850)
T TIGR01407 676 KILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGINGSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPR 753 (850)
T ss_pred CEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCCccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeC
Confidence 999999999999999999975 23333 222222 111 99999999999765 677777
Q ss_pred CCCC------------------------------HhHHHHHhccCCCCCCC
Q psy4493 298 LSKS------------------------------MENFYQVSIAFGLGKHS 318 (323)
Q Consensus 298 ~p~~------------------------------~~~~~qr~GR~gR~g~~ 318 (323)
+|.. ...+.|-+||.-|...+
T Consensus 754 LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D 804 (850)
T TIGR01407 754 LPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRREND 804 (850)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCc
Confidence 7641 12468889999987654
No 127
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.41 E-value=8.2e-12 Score=102.48 Aligned_cols=151 Identities=25% Similarity=0.274 Sum_probs=100.3
Q ss_pred hcCCCCCChhHHHHHHHHhcC-CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhc--CCcEEEEccchh-
Q psy4493 18 KFNLTDFRPNQLAAINIALLK-KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL--KKDAIIIMPTGK- 93 (323)
Q Consensus 18 ~~~~~~~~~~Q~~~~~~~~~~-~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~--~~~~lv~~pTgs- 93 (323)
.++...++++|.++++.+... +..++.+|||+|||..+...+.+. +.. .+.+++++||.+
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~----------------~~~~~~~~~l~~~p~~~~ 66 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEA----------------LKRGKGKRVLVLVPTREL 66 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHH----------------hcccCCCcEEEEeCCHHH
Confidence 345678899999999999988 899999999999998666655442 112 367999999877
Q ss_pred ------hhhhcC-----eee-------------eccCCCeeEEEEcccccccchhHHHHHHHH-HhhCCcceEEEecccc
Q psy4493 94 ------LLKKKK-----ICL-------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKM-YKAGCLARIAIDEVHC 148 (323)
Q Consensus 94 ------~l~~~~-----i~l-------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~-~~~~~v~~vVvDEah~ 148 (323)
.+.... ... .......+++++|++.+.. .+... ....+++++|+||||+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~------~~~~~~~~~~~~~~iIiDE~h~ 140 (201)
T smart00487 67 AEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLD------LLENDLLELSNVDLVILDEAHR 140 (201)
T ss_pred HHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHH------HHHcCCcCHhHCCEEEEECHHH
Confidence 222211 111 0112223999999998864 22221 2334788999999999
Q ss_pred ccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHh
Q psy4493 149 CSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKML 194 (323)
Q Consensus 149 ~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l 194 (323)
+... .+...+..+ +....+..+++++|||+++.........+
T Consensus 141 ~~~~--~~~~~~~~~--~~~~~~~~~~v~~saT~~~~~~~~~~~~~ 182 (201)
T smart00487 141 LLDG--GFGDQLEKL--LKLLPKNVQLLLLSATPPEEIENLLELFL 182 (201)
T ss_pred HhcC--CcHHHHHHH--HHhCCccceEEEEecCCchhHHHHHHHhc
Confidence 8753 233433332 22223578999999999876655444443
No 128
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.32 E-value=2.2e-11 Score=116.23 Aligned_cols=146 Identities=19% Similarity=0.177 Sum_probs=113.6
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEe-cCCchhHHHHHHHHHHHh-hcCCCcEEEEeCChhH
Q psy4493 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRI-KPAAQKDCLDELADLMSR-RFRNQSGIIYTTSIKE 251 (323)
Q Consensus 174 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~-~~~~~~~iVF~~s~~~ 251 (323)
++.|||+|+..+. .++.+.+++. ++..+.++|.++..... .-.....++..+.+.+.. +..++|+||.|.|++.
T Consensus 363 kLsGMTGTA~te~-~Ef~~iY~l~---Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~ 438 (925)
T PRK12903 363 KLSGMTGTAKTEE-QEFIDIYNMR---VNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVED 438 (925)
T ss_pred hhhccCCCCHHHH-HHHHHHhCCC---EEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 6789999987543 4556666554 45567777766543321 112345677777777764 3478999999999999
Q ss_pred HHHHHHHHHhCCCeEEeecCCCCCCc----------------ceeeecccccCCcc--------EEEEccCCCCHhHHHH
Q psy4493 252 CEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLGIDKPNVR--------FVIHHCLSKSMENFYQ 307 (323)
Q Consensus 252 ~~~l~~~L~~~~~~v~~~h~~~~~~~----------------T~~~~~Gid~~~v~--------~Vi~~~~p~~~~~~~q 307 (323)
++.++..|.+.|+....+++.....| |++++||.|+.--. +||....|.|..-=-|
T Consensus 439 SE~ls~~L~~~gi~h~vLNAk~~e~EA~IIa~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQ 518 (925)
T PRK12903 439 SETLHELLLEANIPHTVLNAKQNAREAEIIAKAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQ 518 (925)
T ss_pred HHHHHHHHHHCCCCceeecccchhhHHHHHHhCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHH
Confidence 99999999999999999998755555 99999999997221 9999999999998999
Q ss_pred HhccCCCCCCCCCCCC
Q psy4493 308 VSIAFGLGKHSFRSRY 323 (323)
Q Consensus 308 r~GR~gR~g~~g~~~~ 323 (323)
..||+||.|.+|.|.|
T Consensus 519 LrGRaGRQGDpGss~f 534 (925)
T PRK12903 519 LRGRSGRQGDVGESRF 534 (925)
T ss_pred HhcccccCCCCCcceE
Confidence 9999999999998864
No 129
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.31 E-value=1.7e-11 Score=99.59 Aligned_cols=134 Identities=19% Similarity=0.221 Sum_probs=83.2
Q ss_pred CCChhHHHHHHHHhc-------CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--
Q psy4493 23 DFRPNQLAAINIALL-------KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-- 93 (323)
Q Consensus 23 ~~~~~Q~~~~~~~~~-------~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-- 93 (323)
.+|++|.++++.+.. .+.+++.+|||+|||..+...+... .. .+++++|+.+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l-----------------~~--~~l~~~p~~~l~ 63 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILEL-----------------AR--KVLIVAPNISLL 63 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHH-----------------HC--EEEEEESSHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcc-----------------cc--ceeEecCHHHHH
Confidence 479999999998873 5779999999999998777655442 12 7888899988
Q ss_pred -----hhh---hcCee--------------e-----------eccCCCeeEEEEcccccccchhHHHHH------HHHHh
Q psy4493 94 -----LLK---KKKIC--------------L-----------MTESSSLKLLYVSPEKLAKSKSFMTKL------QKMYK 134 (323)
Q Consensus 94 -----~l~---~~~i~--------------l-----------~~~~~~~~vii~Tp~~l~~~~~~~~~l------~~~~~ 134 (323)
.+. ..... . .......+++++|.+.+.......... .....
T Consensus 64 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 143 (184)
T PF04851_consen 64 EQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLL 143 (184)
T ss_dssp HHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGG
T ss_pred HHHHHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhc
Confidence 221 00000 0 233457789999998886411110000 01123
Q ss_pred hCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCCh
Q psy4493 135 AGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATT 184 (323)
Q Consensus 135 ~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~ 184 (323)
....+++|+||||+..... .+..+ .. .+...+++||||+.+
T Consensus 144 ~~~~~~vI~DEaH~~~~~~-----~~~~i---~~-~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 144 KNKFDLVIIDEAHHYPSDS-----SYREI---IE-FKAAFILGLTATPFR 184 (184)
T ss_dssp GGSESEEEEETGGCTHHHH-----HHHHH---HH-SSCCEEEEEESS-S-
T ss_pred cccCCEEEEehhhhcCCHH-----HHHHH---Hc-CCCCeEEEEEeCccC
Confidence 3467899999999876421 13333 22 567789999999863
No 130
>KOG0384|consensus
Probab=99.30 E-value=4.5e-11 Score=116.08 Aligned_cols=271 Identities=16% Similarity=0.120 Sum_probs=171.2
Q ss_pred CCCCCChhHHHHHHH----HhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--
Q psy4493 20 NLTDFRPNQLAAINI----ALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-- 93 (323)
Q Consensus 20 ~~~~~~~~Q~~~~~~----~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-- 93 (323)
+...+|+.|.+.++. |..+.+.|+.--.|.|||.+-+..|..+|. ........||++|-.+
T Consensus 367 ~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~-------------~~~~~gpflvvvplst~~ 433 (1373)
T KOG0384|consen 367 GGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFH-------------SLQIHGPFLVVVPLSTIT 433 (1373)
T ss_pred ccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHH-------------hhhccCCeEEEeehhhhH
Confidence 337889999996664 456778888889999999766665554321 1112234677777666
Q ss_pred -------hhhhcCee------------------e-e-ccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEecc
Q psy4493 94 -------LLKKKKIC------------------L-M-TESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEV 146 (323)
Q Consensus 94 -------~l~~~~i~------------------l-~-~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEa 146 (323)
....+.+- . . ...-+++++++|-+.+++... .|... .+.+++||||
T Consensus 434 ~W~~ef~~w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~---~L~~i----~w~~~~vDea 506 (1373)
T KOG0384|consen 434 AWEREFETWTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA---ELSKI----PWRYLLVDEA 506 (1373)
T ss_pred HHHHHHHHHhhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh---hhccC----CcceeeecHH
Confidence 11111111 0 1 223468999999999986422 33332 7789999999
Q ss_pred ccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecC---------------------
Q psy4493 147 HCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAP--------------------- 205 (323)
Q Consensus 147 h~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--------------------- 205 (323)
|++-... -..| . ....+.....+++|.|+-.+-.+++-.++++..|..+...
T Consensus 507 hrLkN~~---~~l~---~-~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~ 579 (1373)
T KOG0384|consen 507 HRLKNDE---SKLY---E-SLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQI 579 (1373)
T ss_pred hhcCchH---HHHH---H-HHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHH
Confidence 9996421 1111 1 2333445567889999876555555555544322211110
Q ss_pred --------------CCCCCceeEEEec-------------------------------------------------CCch
Q psy4493 206 --------------FNRPNLFYEVRIK-------------------------------------------------PAAQ 222 (323)
Q Consensus 206 --------------~~~~~~~~~~~~~-------------------------------------------------~~~~ 222 (323)
...|.-.-.+..+ ....
T Consensus 580 L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gae 659 (1373)
T KOG0384|consen 580 LKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAE 659 (1373)
T ss_pred hhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHH
Confidence 0000000000000 0000
Q ss_pred h---H---------H-------------HHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc
Q psy4493 223 K---D---------C-------------LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV 277 (323)
Q Consensus 223 ~---~---------~-------------~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~ 277 (323)
+ . . +++|+.-|+ ..++++|||.+=+..-..|+++|..+++...-+-|...-+.
T Consensus 660 e~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk--~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgel 737 (1373)
T KOG0384|consen 660 EKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLK--EGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGEL 737 (1373)
T ss_pred HHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHh--cCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHH
Confidence 0 0 0 111222222 26799999999999999999999999888777776665544
Q ss_pred ---------------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCC
Q psy4493 278 ---------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSF 319 (323)
Q Consensus 278 ---------------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g 319 (323)
|-+.+.|||+-..+.||.||.-+++..=+|---||-|-|+.-
T Consensus 738 Rq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk 800 (1373)
T KOG0384|consen 738 RQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKK 800 (1373)
T ss_pred HHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999864
No 131
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.29 E-value=1.5e-09 Score=104.34 Aligned_cols=67 Identities=24% Similarity=0.150 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHH-hhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCC--CCc----------------ceeee
Q psy4493 222 QKDCLDELADLMS-RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE--SNV----------------SIAFG 282 (323)
Q Consensus 222 ~~~~~~~l~~~l~-~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~--~~~----------------T~~~~ 282 (323)
..+|...+.+.+. .+..++|+||-|.|++..+.++..|.+.|++..++++.-. ..| |+.++
T Consensus 406 ~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~AG~~G~VTIATNMAG 485 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGRKGSITIATNMAG 485 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhcCCCCcEEEeccccC
Confidence 3456666666654 3457899999999999999999999999999999999742 333 99999
Q ss_pred cccccC
Q psy4493 283 LGIDKP 288 (323)
Q Consensus 283 ~Gid~~ 288 (323)
||.|+.
T Consensus 486 RGTDI~ 491 (870)
T CHL00122 486 RGTDII 491 (870)
T ss_pred CCcCee
Confidence 999984
No 132
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.29 E-value=3.3e-12 Score=89.37 Aligned_cols=63 Identities=27% Similarity=0.297 Sum_probs=56.2
Q ss_pred HHHHHHHhCCCeEEeecCCCCCCc------------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCC
Q psy4493 254 DLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLG 315 (323)
Q Consensus 254 ~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~ 315 (323)
.+++.|+..++.+..+||++++.+ |+++++|+|+|+++.||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 456677777888888888887776 89999999999999999999999999999999999998
Q ss_pred C
Q psy4493 316 K 316 (323)
Q Consensus 316 g 316 (323)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 133
>KOG0390|consensus
Probab=99.27 E-value=5.8e-10 Score=106.09 Aligned_cols=60 Identities=17% Similarity=-0.053 Sum_probs=55.1
Q ss_pred CCCeEEeecCCCCCCc---------------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCC
Q psy4493 262 RGLRVSAYHAKLESNV---------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFR 320 (323)
Q Consensus 262 ~~~~v~~~h~~~~~~~---------------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~ 320 (323)
+|+.+..+||.++..+ +.+.++|+++-..+.||.+|..++++.=.|-++|+=|.|++-.
T Consensus 618 ~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~ 697 (776)
T KOG0390|consen 618 RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKP 697 (776)
T ss_pred cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcce
Confidence 3888999999998888 8999999999999999999999999999999999999998754
Q ss_pred C
Q psy4493 321 S 321 (323)
Q Consensus 321 ~ 321 (323)
|
T Consensus 698 v 698 (776)
T KOG0390|consen 698 V 698 (776)
T ss_pred E
Confidence 4
No 134
>KOG0387|consensus
Probab=99.25 E-value=3e-10 Score=106.11 Aligned_cols=82 Identities=13% Similarity=0.039 Sum_probs=75.2
Q ss_pred CCCcEEEEeCChhHHHHHHHHHH-hCCCeEEeecCCCCCCc--------------------ceeeecccccCCccEEEEc
Q psy4493 238 RNQSGIIYTTSIKECEDLREELR-NRGLRVSAYHAKLESNV--------------------SIAFGLGIDKPNVRFVIHH 296 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~-~~~~~v~~~h~~~~~~~--------------------T~~~~~Gid~~~v~~Vi~~ 296 (323)
.+.++|+|..|+..-..+...|. ..|+...-+-|..+... |.+.+.|+|+-..+.||.|
T Consensus 545 qg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIf 624 (923)
T KOG0387|consen 545 QGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIF 624 (923)
T ss_pred CCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEE
Confidence 67899999999999999999998 58999988888877666 9999999999999999999
Q ss_pred cCCCCHhHHHHHhccCCCCCCCC
Q psy4493 297 CLSKSMENFYQVSIAFGLGKHSF 319 (323)
Q Consensus 297 ~~p~~~~~~~qr~GR~gR~g~~g 319 (323)
|+.+++..=.|-.-|+=|.|+.-
T Consensus 625 DPdWNPStD~QAreRawRiGQkk 647 (923)
T KOG0387|consen 625 DPDWNPSTDNQARERAWRIGQKK 647 (923)
T ss_pred CCCCCCccchHHHHHHHhhcCcc
Confidence 99999999999999999999763
No 135
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.25 E-value=4.9e-10 Score=107.53 Aligned_cols=110 Identities=23% Similarity=0.260 Sum_probs=76.1
Q ss_pred EEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecC-CchhHHHHHHHHHHHh-hcCCCcEEEEeCChhHH
Q psy4493 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKP-AAQKDCLDELADLMSR-RFRNQSGIIYTTSIKEC 252 (323)
Q Consensus 175 ~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~-~~~~~~~iVF~~s~~~~ 252 (323)
+.|||+|+..+ ..++.+.+++. ++..+.++|..+......- .....|+..+.+.+.. +..++|+||-|.|++..
T Consensus 377 LsGMTGTa~te-~~Ef~~iY~l~---Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~S 452 (939)
T PRK12902 377 LAGMTGTAKTE-EVEFEKTYKLE---VTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKS 452 (939)
T ss_pred hcccCCCCHHH-HHHHHHHhCCc---EEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHH
Confidence 44666665433 23445554443 4556777776654333211 2345677777766654 34889999999999999
Q ss_pred HHHHHHHHhCCCeEEeecCCC-C-CCc----------------ceeeecccccC
Q psy4493 253 EDLREELRNRGLRVSAYHAKL-E-SNV----------------SIAFGLGIDKP 288 (323)
Q Consensus 253 ~~l~~~L~~~~~~v~~~h~~~-~-~~~----------------T~~~~~Gid~~ 288 (323)
+.++..|.+.|+...++++.- . ..| |+.++||.|+.
T Consensus 453 E~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 453 ELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred HHHHHHHHHcCCchheeeCCCcchHhHHHHHHhcCCCCcEEEeccCCCCCcCEe
Confidence 999999999999999999872 2 223 99999999984
No 136
>KOG1123|consensus
Probab=99.25 E-value=6.5e-11 Score=105.31 Aligned_cols=254 Identities=18% Similarity=0.162 Sum_probs=150.5
Q ss_pred CCCChhHHHHHHHHhc---CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-----
Q psy4493 22 TDFRPNQLAAINIALL---KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----- 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~---~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs----- 93 (323)
..+||.|.+.+...+- .++.+++.|.|.||| +.|++.-.. =.|+++|++..+-
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKt---------LVGvTAa~t----------ikK~clvLcts~VSVeQW 361 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKT---------LVGVTAACT----------IKKSCLVLCTSAVSVEQW 361 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCc---------eeeeeeeee----------ecccEEEEecCccCHHHH
Confidence 5678999998887763 356899999999999 234432111 1355666554433
Q ss_pred --------hhhhcCee-e-----eccCCCeeEEEEcccccccc-------hhHHHHHHHHHhhCCcceEEEecccccccc
Q psy4493 94 --------LLKKKKIC-L-----MTESSSLKLLYVSPEKLAKS-------KSFMTKLQKMYKAGCLARIAIDEVHCCSSW 152 (323)
Q Consensus 94 --------~l~~~~i~-l-----~~~~~~~~vii~Tp~~l~~~-------~~~~~~l~~~~~~~~v~~vVvDEah~~~~~ 152 (323)
.++..++. . ......+.|+|+|-.++..+ +..++.++ .+.++++++||+|.+...
T Consensus 362 kqQfk~wsti~d~~i~rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~----~~EWGllllDEVHvvPA~ 437 (776)
T KOG1123|consen 362 KQQFKQWSTIQDDQICRFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLR----GREWGLLLLDEVHVVPAK 437 (776)
T ss_pred HHHHHhhcccCccceEEeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHh----cCeeeeEEeehhccchHH
Confidence 22222222 1 22345678999998888642 22333443 358999999999988652
Q ss_pred CCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCC-CCcEEEec-----------------CCCCCC----
Q psy4493 153 GHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQI-EDCVVIKA-----------------PFNRPN---- 210 (323)
Q Consensus 153 ~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~-~~~~~~~~-----------------~~~~~~---- 210 (323)
-||..+..+ ...-.++||||+-++.-+ ..-|++ -.|.++.. ....|.
T Consensus 438 --MFRRVlsiv-------~aHcKLGLTATLvREDdK--I~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eF 506 (776)
T KOG1123|consen 438 --MFRRVLSIV-------QAHCKLGLTATLVREDDK--ITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEF 506 (776)
T ss_pred --HHHHHHHHH-------HHHhhccceeEEeecccc--ccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHH
Confidence 255543222 223468999998765421 111111 11111111 011111
Q ss_pred ------------ceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc-
Q psy4493 211 ------------LFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV- 277 (323)
Q Consensus 211 ------------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~- 277 (323)
.-+.+. ...+-..-..|.++-.. ++.|+|||..++-.-..+|-.|. --.++|..++.|
T Consensus 507 y~eYL~~~t~kr~lLyvM--NP~KFraCqfLI~~HE~--RgDKiIVFsDnvfALk~YAikl~-----KpfIYG~Tsq~ER 577 (776)
T KOG1123|consen 507 YREYLRENTRKRMLLYVM--NPNKFRACQFLIKFHER--RGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQNER 577 (776)
T ss_pred HHHHHhhhhhhhheeeec--CcchhHHHHHHHHHHHh--cCCeEEEEeccHHHHHHHHHHcC-----CceEECCCchhHH
Confidence 001110 11111111223333222 68899999998877766666664 336788888888
Q ss_pred ------------------ceeeecccccCCccEEEEccCC-CCHhHHHHHhccCCCCCCC
Q psy4493 278 ------------------SIAFGLGIDKPNVRFVIHHCLS-KSMENFYQVSIAFGLGKHS 318 (323)
Q Consensus 278 ------------------T~~~~~Gid~~~v~~Vi~~~~p-~~~~~~~qr~GR~gR~g~~ 318 (323)
+.+....+|+|..+++|+...- .|..+=-||.||..|+.+.
T Consensus 578 m~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~ 637 (776)
T KOG1123|consen 578 MKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKR 637 (776)
T ss_pred HHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhc
Confidence 6777889999999999987653 4778889999999998653
No 137
>COG4889 Predicted helicase [General function prediction only]
Probab=99.22 E-value=3.3e-11 Score=113.47 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=59.8
Q ss_pred CcEEEEeCChhHHHHHHHHHHh-------------CCCeEEeec--CCCCCCc---------------------ceeeec
Q psy4493 240 QSGIIYTTSIKECEDLREELRN-------------RGLRVSAYH--AKLESNV---------------------SIAFGL 283 (323)
Q Consensus 240 ~~~iVF~~s~~~~~~l~~~L~~-------------~~~~v~~~h--~~~~~~~---------------------T~~~~~ 283 (323)
++.|-||.+.++...+++.+.+ .++++.+=| |.|.-.+ -..+++
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 4678999998888777765543 245555555 4444333 567899
Q ss_pred ccccCCccEEEEccCCCCHhHHHHHhccCCCCCC
Q psy4493 284 GIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKH 317 (323)
Q Consensus 284 Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~ 317 (323)
|||+|.++.||.+++-.+..+.+|-+||+.|-.+
T Consensus 541 GVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~ 574 (1518)
T COG4889 541 GVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAK 574 (1518)
T ss_pred CCCccccceEEEecCchhHHHHHHHHHHHHHhCc
Confidence 9999999999999988899999999999999643
No 138
>KOG0953|consensus
Probab=99.22 E-value=4.9e-10 Score=100.98 Aligned_cols=222 Identities=15% Similarity=0.169 Sum_probs=139.5
Q ss_pred CCeEE-EcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------hhhhcCee--e------
Q psy4493 39 KDAII-IMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------LLKKKKIC--L------ 102 (323)
Q Consensus 39 ~~~~~-~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------~l~~~~i~--l------ 102 (323)
+.++. +.||-+|||- .|+..+.+-++.+.+.|-.. .+.+.||+ |
T Consensus 191 RkIi~H~GPTNSGKTy--------------------~ALqrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~ 250 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTY--------------------RALQRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEER 250 (700)
T ss_pred heEEEEeCCCCCchhH--------------------HHHHHHhhhccceecchHHHHHHHHHHHhhhcCCCcccccccee
Confidence 33444 5599999992 34555666788899999887 77778887 3
Q ss_pred ---eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCC-CCCEEEE
Q psy4493 103 ---MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP-DVPILGL 178 (323)
Q Consensus 103 ---~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~-~~~~i~l 178 (323)
......+..+=||.|+..-+ ...++.|+||+.+|.+-.+++ .+-..+...-. .+. +
T Consensus 251 ~~~~~~~~~a~hvScTVEM~sv~-------------~~yeVAViDEIQmm~Dp~RGw----AWTrALLGl~AdEiH---L 310 (700)
T KOG0953|consen 251 RFVLDNGNPAQHVSCTVEMVSVN-------------TPYEVAVIDEIQMMRDPSRGW----AWTRALLGLAADEIH---L 310 (700)
T ss_pred eecCCCCCcccceEEEEEEeecC-------------CceEEEEehhHHhhcCcccch----HHHHHHHhhhhhhhh---c
Confidence 11122367788898888521 367899999999997633222 22222222111 111 1
Q ss_pred eecCChhHHHHHHHHhCCCCcE-EEecCCCCCCceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHH
Q psy4493 179 TATATTKVMLDVQKMLQIEDCV-VIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLRE 257 (323)
Q Consensus 179 SAT~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~ 257 (323)
.+- +.....+.+.+.+.... .+..-....++. ..+.+..-+++ .+.+-++| |.|++..-.+..
T Consensus 311 CGe--psvldlV~~i~k~TGd~vev~~YeRl~pL~------------v~~~~~~sl~n-lk~GDCvV-~FSkk~I~~~k~ 374 (700)
T KOG0953|consen 311 CGE--PSVLDLVRKILKMTGDDVEVREYERLSPLV------------VEETALGSLSN-LKPGDCVV-AFSKKDIFTVKK 374 (700)
T ss_pred cCC--chHHHHHHHHHhhcCCeeEEEeecccCcce------------ehhhhhhhhcc-CCCCCeEE-EeehhhHHHHHH
Confidence 111 22233444444333221 111111111111 11133333442 24455555 889999999999
Q ss_pred HHHhCCCe-EEeecCCCCCCc--------------------ceeeecccccCCccEEEEccCC---------CCHhHHHH
Q psy4493 258 ELRNRGLR-VSAYHAKLESNV--------------------SIAFGLGIDKPNVRFVIHHCLS---------KSMENFYQ 307 (323)
Q Consensus 258 ~L~~~~~~-v~~~h~~~~~~~--------------------T~~~~~Gid~~~v~~Vi~~~~p---------~~~~~~~q 307 (323)
.+.++|.. +++++|+++++. ||+++.|+|+. ++.||.+++- .+..+-.|
T Consensus 375 kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sqikQ 453 (700)
T KOG0953|consen 375 KIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQIKQ 453 (700)
T ss_pred HHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeecccCCcccceeccHHHHHH
Confidence 99988765 999999999987 99999999997 9999998864 36778999
Q ss_pred HhccCCCCCC
Q psy4493 308 VSIAFGLGKH 317 (323)
Q Consensus 308 r~GR~gR~g~ 317 (323)
-+|||||.|.
T Consensus 454 IAGRAGRf~s 463 (700)
T KOG0953|consen 454 IAGRAGRFGS 463 (700)
T ss_pred Hhhccccccc
Confidence 9999999974
No 139
>KOG1000|consensus
Probab=99.20 E-value=7.8e-10 Score=98.42 Aligned_cols=82 Identities=11% Similarity=0.043 Sum_probs=74.8
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc--------------------ceeeecccccCCccEEEEcc
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------------SIAFGLGIDKPNVRFVIHHC 297 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~--------------------T~~~~~Gid~~~v~~Vi~~~ 297 (323)
++.|.+|||.-...-+.+...+.++++...-+-|..+..+ ..+.+.|+++...+.||...
T Consensus 491 ~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaE 570 (689)
T KOG1000|consen 491 PPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAE 570 (689)
T ss_pred CCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEE
Confidence 5679999999999999999999999998888899888877 56789999999999999999
Q ss_pred CCCCHhHHHHHhccCCCCCCCC
Q psy4493 298 LSKSMENFYQVSIAFGLGKHSF 319 (323)
Q Consensus 298 ~p~~~~~~~qr~GR~gR~g~~g 319 (323)
+++++..++|---|+-|.|+.+
T Consensus 571 L~wnPgvLlQAEDRaHRiGQks 592 (689)
T KOG1000|consen 571 LHWNPGVLLQAEDRAHRIGQKS 592 (689)
T ss_pred ecCCCceEEechhhhhhccccc
Confidence 9999999999999999999865
No 140
>KOG0951|consensus
Probab=99.15 E-value=1.3e-10 Score=113.06 Aligned_cols=261 Identities=13% Similarity=0.123 Sum_probs=148.0
Q ss_pred CCCChhHHHHHHHHhc-CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------
Q psy4493 22 TDFRPNQLAAINIALL-KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK------- 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~-~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs------- 93 (323)
.++.+.|-++++.... ++++++-+|+|+|||.+.-.++.+. - .-..++.++|-..
T Consensus 1142 ~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~--~---------------~~~~~vyi~p~~~i~~~~~~ 1204 (1674)
T KOG0951|consen 1142 QDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRP--D---------------TIGRAVYIAPLEEIADEQYR 1204 (1674)
T ss_pred cccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCC--c---------------cceEEEEecchHHHHHHHHH
Confidence 4456777777776655 5557777799999997765555330 0 0123667777666
Q ss_pred ----hhhh-cCeee----------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEecccccccc-CCCch
Q psy4493 94 ----LLKK-KKICL----------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSW-GHDFR 157 (323)
Q Consensus 94 ----~l~~-~~i~l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~-~~~~r 157 (323)
.+.. .|..+ .......+|+|+||+++- .++ ..+.++++|+||.|++... |..+.
T Consensus 1205 ~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~~~vii~tpe~~d-------~lq---~iQ~v~l~i~d~lh~igg~~g~v~e 1274 (1674)
T KOG0951|consen 1205 DWEKKFSKLLGLRIVKLTGETSLDLKLLQKGQVIISTPEQWD-------LLQ---SIQQVDLFIVDELHLIGGVYGAVYE 1274 (1674)
T ss_pred HHHHhhccccCceEEecCCccccchHHhhhcceEEechhHHH-------HHh---hhhhcceEeeehhhhhcccCCceEE
Confidence 1111 12221 223345689999999985 232 4468999999999998742 21111
Q ss_pred HHHHhHHHHHhhC-CCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCC-CCCc-eeEEEecCCc--h---hHHHHHH
Q psy4493 158 PDYQYLSILKTMF-PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFN-RPNL-FYEVRIKPAA--Q---KDCLDEL 229 (323)
Q Consensus 158 ~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~-~~~~~~~~~~--~---~~~~~~l 229 (323)
-... +..+-..+ .+++++++|..+.+. .++ +|.....+++.+.+ ||.. ...+...... . .......
T Consensus 1275 vi~S-~r~ia~q~~k~ir~v~ls~~lana--~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~ 1348 (1674)
T KOG0951|consen 1275 VICS-MRYIASQLEKKIRVVALSSSLANA--RDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPT 1348 (1674)
T ss_pred EEee-HHHHHHHHHhheeEEEeehhhccc--hhh---ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhH
Confidence 1111 22222222 478999999998873 233 77777677776544 3332 2222222211 1 1111122
Q ss_pred HHHHHh-hcCCCcEEEEeCChhHHHHHHHHHHhC----------------------CCeEEeecCCCCCCc---------
Q psy4493 230 ADLMSR-RFRNQSGIIYTTSIKECEDLREELRNR----------------------GLRVSAYHAKLESNV--------- 277 (323)
Q Consensus 230 ~~~l~~-~~~~~~~iVF~~s~~~~~~l~~~L~~~----------------------~~~v~~~h~~~~~~~--------- 277 (323)
+.-+.. ...+++++||.++++.|..++..|-.. ..+.++=|-+++..+
T Consensus 1349 ~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e 1428 (1674)
T KOG0951|consen 1349 YTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFE 1428 (1674)
T ss_pred HHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHh
Confidence 222222 236789999999999998888665431 122223377777766
Q ss_pred --------------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCC
Q psy4493 278 --------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKH 317 (323)
Q Consensus 278 --------------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~ 317 (323)
+-+...|..+-|.+.-.+.| .+..+.+|++|+|.|+|+
T Consensus 1429 ~g~i~v~v~s~~~~~~~~~~~lVvvmgt~~ydg~e~~~~~--y~i~~ll~m~G~a~~~~k 1486 (1674)
T KOG0951|consen 1429 AGAIQVCVMSRDCYGTKLKAHLVVVMGTQYYDGKEHSYED--YPIAELLQMVGLASGAGK 1486 (1674)
T ss_pred cCcEEEEEEEcccccccccceEEEEecceeeccccccccc--CchhHHHHHhhhhcCCcc
Confidence 22333333333333323333 355699999999999553
No 141
>KOG0389|consensus
Probab=99.13 E-value=2.5e-09 Score=100.08 Aligned_cols=81 Identities=16% Similarity=0.089 Sum_probs=71.5
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc--------------------ceeeecccccCCccEEEEcc
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------------SIAFGLGIDKPNVRFVIHHC 297 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~--------------------T~~~~~Gid~~~v~~Vi~~~ 297 (323)
++.+++||..=-..-.-+...|...+++..-+-|...-.+ |.+.+-|||+-..+.||.+|
T Consensus 776 ~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD 855 (941)
T KOG0389|consen 776 KGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHD 855 (941)
T ss_pred cCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEee
Confidence 4689999998888888888889888888888888876665 99999999999999999999
Q ss_pred CCCCHhHHHHHhccCCCCCCC
Q psy4493 298 LSKSMENFYQVSIAFGLGKHS 318 (323)
Q Consensus 298 ~p~~~~~~~qr~GR~gR~g~~ 318 (323)
+..++-.=.|---|+-|.|+.
T Consensus 856 ~dFNP~dD~QAEDRcHRvGQt 876 (941)
T KOG0389|consen 856 IDFNPYDDKQAEDRCHRVGQT 876 (941)
T ss_pred cCCCCcccchhHHHHHhhCCc
Confidence 999998888988999998875
No 142
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.12 E-value=5.9e-09 Score=102.79 Aligned_cols=126 Identities=14% Similarity=0.078 Sum_probs=73.3
Q ss_pred CCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCC-CceeEEE-ecCC----chhHHHHHHHHHHHhh-cCCCcEEEE
Q psy4493 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRP-NLFYEVR-IKPA----AQKDCLDELADLMSRR-FRNQSGIIY 245 (323)
Q Consensus 173 ~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~~~~-~~~~----~~~~~~~~l~~~l~~~-~~~~~~iVF 245 (323)
..+|++|||++-.....+.+.+|+........++... +..+.+. ..+. ..++..+.+.+.+... ..+++++|+
T Consensus 574 ~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVL 653 (820)
T PRK07246 574 CKTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEELKQLQQPILVL 653 (820)
T ss_pred CeEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 3678999999732222367888886543333322211 1122211 1121 1223333444444211 256899999
Q ss_pred eCChhHHHHHHHHHHhCCCeEEeecCC-CCCCc---------------ceeeecccccC--CccEEEEccCC
Q psy4493 246 TTSIKECEDLREELRNRGLRVSAYHAK-LESNV---------------SIAFGLGIDKP--NVRFVIHHCLS 299 (323)
Q Consensus 246 ~~s~~~~~~l~~~L~~~~~~v~~~h~~-~~~~~---------------T~~~~~Gid~~--~v~~Vi~~~~p 299 (323)
++|.+..+.+++.|......+ ...|. .+... |+.+.+|||+| +...||...+|
T Consensus 654 FtS~~~l~~v~~~l~~~~~~~-l~Qg~~~~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLP 724 (820)
T PRK07246 654 FNSKKHLLAVSDLLDQWQVSH-LAQEKNGTAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLP 724 (820)
T ss_pred ECcHHHHHHHHHHHhhcCCcE-EEeCCCccHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCC
Confidence 999999999999997654434 33332 22221 99999999997 46677777766
No 143
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.12 E-value=6.4e-10 Score=107.91 Aligned_cols=146 Identities=19% Similarity=0.166 Sum_probs=113.9
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEec-CCchhHHHHHHHHHHHh-hcCCCcEEEEeCChhH
Q psy4493 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIK-PAAQKDCLDELADLMSR-RFRNQSGIIYTTSIKE 251 (323)
Q Consensus 174 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~-~~~~~~~iVF~~s~~~ 251 (323)
.+-|||+|+..+. .++.+.+++. ++..+.++|..+...... -....+|+..+.+.+.. +..++|+||-|.|++.
T Consensus 565 kLsGMTGTA~tea-~Ef~~IY~L~---Vv~IPTnrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~ 640 (1112)
T PRK12901 565 KLAGMTGTAETEA-GEFWDIYKLD---VVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEI 640 (1112)
T ss_pred hhcccCCCCHHHH-HHHHHHhCCC---EEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHH
Confidence 5779999987653 4566666655 455667777665332211 12346678887777654 3478999999999999
Q ss_pred HHHHHHHHHhCCCeEEeecCCCCCCc----------------ceeeecccccC--------CccEEEEccCCCCHhHHHH
Q psy4493 252 CEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLGIDKP--------NVRFVIHHCLSKSMENFYQ 307 (323)
Q Consensus 252 ~~~l~~~L~~~~~~v~~~h~~~~~~~----------------T~~~~~Gid~~--------~v~~Vi~~~~p~~~~~~~q 307 (323)
.+.++..|...|+...++++..-..| |+.++||.|+. .--+||-...+.|...-.|
T Consensus 641 SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~Q 720 (1112)
T PRK12901 641 SELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQ 720 (1112)
T ss_pred HHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHH
Confidence 99999999999998888888766555 99999999996 2238999999999999999
Q ss_pred HhccCCCCCCCCCCCC
Q psy4493 308 VSIAFGLGKHSFRSRY 323 (323)
Q Consensus 308 r~GR~gR~g~~g~~~~ 323 (323)
-.||+||.|.+|.|.|
T Consensus 721 LrGRaGRQGDPGsS~f 736 (1112)
T PRK12901 721 LRGRAGRQGDPGSSQF 736 (1112)
T ss_pred HhcccccCCCCCcceE
Confidence 9999999999998863
No 144
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.09 E-value=8e-09 Score=98.34 Aligned_cols=249 Identities=12% Similarity=0.099 Sum_probs=153.0
Q ss_pred CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------hhhhcCee-----ee----
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------LLKKKKIC-----LM---- 103 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------~l~~~~i~-----l~---- 103 (323)
-.++-+|.|+|||..+.++++...+ .++..+++++--.+ .++..++. +.
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~---------------~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~ 115 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALK---------------NPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDY 115 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhcc---------------CCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccc
Confidence 3567889999999999999877321 14567888888887 44444442 11
Q ss_pred -ccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhH----HHHHhhCC-CCCEEE
Q psy4493 104 -TESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL----SILKTMFP-DVPILG 177 (323)
Q Consensus 104 -~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l----~~l~~~~~-~~~~i~ 177 (323)
......+-+++..+.|.+ . .. ....+.++||+||+-..... -+.+.+.+. ..+..... ...+|+
T Consensus 116 ~i~~~~~~rLivqIdSL~R------~-~~-~~l~~yDvVIIDEv~svL~q--L~S~Tm~~~~~v~~~L~~lI~~ak~VI~ 185 (824)
T PF02399_consen 116 IIDGRPYDRLIVQIDSLHR------L-DG-SLLDRYDVVIIDEVMSVLNQ--LFSPTMRQREEVDNLLKELIRNAKTVIV 185 (824)
T ss_pred cccccccCeEEEEehhhhh------c-cc-ccccccCEEEEehHHHHHHH--HhHHHHhhHHHHHHHHHHHHHhCCeEEE
Confidence 111234567777777753 1 11 12346899999999877652 122222222 22333333 567999
Q ss_pred EeecCChhHHHHHHHHhCCCCcEEEecCCCCCCc---eeEEE-----------------------------------ecC
Q psy4493 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNL---FYEVR-----------------------------------IKP 219 (323)
Q Consensus 178 lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~---~~~~~-----------------------------------~~~ 219 (323)
+-|+++....+.+...-+-.+..++......++. .-.+. ...
T Consensus 186 ~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (824)
T PF02399_consen 186 MDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAIS 265 (824)
T ss_pred ecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccc
Confidence 9999999987777665444443333321111110 00000 000
Q ss_pred CchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------ceeeeccccc
Q psy4493 220 AAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------SIAFGLGIDK 287 (323)
Q Consensus 220 ~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------T~~~~~Gid~ 287 (323)
......+..|..-|. .+.++-|||+|..-++.+++.....+.++..++++-+..+ |.++..|+++
T Consensus 266 ~~~~tF~~~L~~~L~---~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv~~W~~~~VviYT~~itvG~Sf 342 (824)
T PF02399_consen 266 NDETTFFSELLARLN---AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDVESWKKYDVVIYTPVITVGLSF 342 (824)
T ss_pred cchhhHHHHHHHHHh---CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccccccccceeEEEEeceEEEEecc
Confidence 112234555555554 6778889999999999999999988889999988766665 9999999999
Q ss_pred CCcc--EEEEc--c--CCCCHhHHHHHhccCCCCC
Q psy4493 288 PNVR--FVIHH--C--LSKSMENFYQVSIAFGLGK 316 (323)
Q Consensus 288 ~~v~--~Vi~~--~--~p~~~~~~~qr~GR~gR~g 316 (323)
.+.. -|.-| . ...+..+..|++||+-.-.
T Consensus 343 ~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~ 377 (824)
T PF02399_consen 343 EEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL 377 (824)
T ss_pred chhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc
Confidence 7543 22222 1 1246667999999985433
No 145
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.04 E-value=1.7e-09 Score=83.49 Aligned_cols=120 Identities=23% Similarity=0.243 Sum_probs=75.8
Q ss_pred CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------hhhhc---Cee--e----
Q psy4493 39 KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------LLKKK---KIC--L---- 102 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------~l~~~---~i~--l---- 102 (323)
+.+++.+|||.|||..+...+..... ....+.+++++|+.. .+... ++. +
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~--------------~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 66 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLD--------------SLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGG 66 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHh--------------cccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecC
Confidence 35788999999999887777655210 024578999999998 11111 122 1
Q ss_pred -------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCC
Q psy4493 103 -------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174 (323)
Q Consensus 103 -------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~ 174 (323)
.......+++++|++.+.. .+.. ......++++|+||+|.+.... ..... ........+..+
T Consensus 67 ~~~~~~~~~~~~~~~i~i~t~~~~~~------~~~~~~~~~~~~~~iiiDE~h~~~~~~--~~~~~--~~~~~~~~~~~~ 136 (144)
T cd00046 67 TSIKQQEKLLSGKTDIVVGTPGRLLD------ELERLKLSLKKLDLLILDEAHRLLNQG--FGLLG--LKILLKLPKDRQ 136 (144)
T ss_pred cchhHHHHHhcCCCCEEEECcHHHHH------HHHcCCcchhcCCEEEEeCHHHHhhcc--hHHHH--HHHHhhCCccce
Confidence 1125678999999998863 1111 1123478899999999887522 22211 112333345789
Q ss_pred EEEEeecC
Q psy4493 175 ILGLTATA 182 (323)
Q Consensus 175 ~i~lSAT~ 182 (323)
++++|||+
T Consensus 137 ~i~~saTp 144 (144)
T cd00046 137 VLLLSATP 144 (144)
T ss_pred EEEEeccC
Confidence 99999996
No 146
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.97 E-value=1.3e-07 Score=94.86 Aligned_cols=127 Identities=17% Similarity=0.189 Sum_probs=72.1
Q ss_pred CEEEEeecCChhH-HHHHHHHhCCCCc----EEEecCCCC-CCceeEEEe-cCC----chhHHHHHHHHHHHhh--cCCC
Q psy4493 174 PILGLTATATTKV-MLDVQKMLQIEDC----VVIKAPFNR-PNLFYEVRI-KPA----AQKDCLDELADLMSRR--FRNQ 240 (323)
Q Consensus 174 ~~i~lSAT~~~~~-~~~i~~~l~~~~~----~~~~~~~~~-~~~~~~~~~-~~~----~~~~~~~~l~~~l~~~--~~~~ 240 (323)
.+|++|||++... .+.+.+.+|+.+. ..+..+++- .+..+.+.. .+. ..+.....+.+.+.+. ..++
T Consensus 674 ~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l~~~~~g 753 (928)
T PRK08074 674 SVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAKIAKATKG 753 (928)
T ss_pred cEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHHHHHhCCC
Confidence 4678889987432 2445677888642 122223332 222222221 221 1123333444443321 2567
Q ss_pred cEEEEeCChhHHHHHHHHHHhCCCe--EEeecCCCC---CCc---------------ceeeecccccCC--ccEEEEccC
Q psy4493 241 SGIIYTTSIKECEDLREELRNRGLR--VSAYHAKLE---SNV---------------SIAFGLGIDKPN--VRFVIHHCL 298 (323)
Q Consensus 241 ~~iVF~~s~~~~~~l~~~L~~~~~~--v~~~h~~~~---~~~---------------T~~~~~Gid~~~--v~~Vi~~~~ 298 (323)
+++||++|.+..+.+++.|...... ...+.=+++ ... |..+.+|||+|+ +++||...+
T Consensus 754 ~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kL 833 (928)
T PRK08074 754 RMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRL 833 (928)
T ss_pred CEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEecC
Confidence 9999999999999999999754220 112221221 111 899999999996 589999887
Q ss_pred CC
Q psy4493 299 SK 300 (323)
Q Consensus 299 p~ 300 (323)
|.
T Consensus 834 PF 835 (928)
T PRK08074 834 PF 835 (928)
T ss_pred CC
Confidence 74
No 147
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.94 E-value=7.5e-09 Score=78.50 Aligned_cols=119 Identities=14% Similarity=0.082 Sum_probs=65.2
Q ss_pred CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------hhhhcCeee------eccC
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------LLKKKKICL------MTES 106 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------~l~~~~i~l------~~~~ 106 (323)
--++..++|.|||..++-.+ +.+++.++..+||++||.. .|+...+.. ....
T Consensus 6 ~~~~d~hpGaGKTr~vlp~~---------------~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~ 70 (148)
T PF07652_consen 6 LTVLDLHPGAGKTRRVLPEI---------------VREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHF 70 (148)
T ss_dssp EEEEE--TTSSTTTTHHHHH---------------HHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----
T ss_pred eeEEecCCCCCCcccccHHH---------------HHHHHHccCeEEEecccHHHHHHHHHHHhcCCcccCceeeecccc
Confidence 34567799999997633222 1223557788999999998 555555542 2234
Q ss_pred CCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHh--hCCCCCEEEEeecCCh
Q psy4493 107 SSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT--MFPDVPILGLTATATT 184 (323)
Q Consensus 107 ~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~--~~~~~~~i~lSAT~~~ 184 (323)
+..-|-++|-..+.. .+.......+++++|+||||....+. +.....+.. ......+|.+|||+|-
T Consensus 71 g~~~i~vMc~at~~~------~~~~p~~~~~yd~II~DEcH~~Dp~s------IA~rg~l~~~~~~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 71 GSSIIDVMCHATYGH------FLLNPCRLKNYDVIIMDECHFTDPTS------IAARGYLRELAESGEAKVIFMTATPPG 138 (148)
T ss_dssp SSSSEEEEEHHHHHH------HHHTSSCTTS-SEEEECTTT--SHHH------HHHHHHHHHHHHTTS-EEEEEESS-TT
T ss_pred CCCcccccccHHHHH------HhcCcccccCccEEEEeccccCCHHH------HhhheeHHHhhhccCeeEEEEeCCCCC
Confidence 455566677665542 33444456789999999999765422 111122222 2234689999999985
Q ss_pred h
Q psy4493 185 K 185 (323)
Q Consensus 185 ~ 185 (323)
.
T Consensus 139 ~ 139 (148)
T PF07652_consen 139 S 139 (148)
T ss_dssp -
T ss_pred C
Confidence 4
No 148
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.90 E-value=6.2e-08 Score=94.82 Aligned_cols=73 Identities=18% Similarity=0.161 Sum_probs=56.8
Q ss_pred EEEeCChhHHHHHHHHHHhC----C--CeEEeecCCCCCCc---------------------------------------
Q psy4493 243 IIYTTSIKECEDLREELRNR----G--LRVSAYHAKLESNV--------------------------------------- 277 (323)
Q Consensus 243 iVF~~s~~~~~~l~~~L~~~----~--~~v~~~h~~~~~~~--------------------------------------- 277 (323)
+|-.++++.|..++..|.+. + +.+++||+..+...
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 77789999999999888764 2 45788999872211
Q ss_pred -----ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCC
Q psy4493 278 -----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHS 318 (323)
Q Consensus 278 -----T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~ 318 (323)
|.+.+.|+|+. .+.+|- -|.++.+.+|++||+.|-|..
T Consensus 840 ~i~v~Tqv~E~g~D~d-fd~~~~--~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 840 FIVLATPVEEVGRDHD-YDWAIA--DPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred eEEEEeeeEEEEeccc-CCeeee--ccCcHHHHHHHhhcccccccC
Confidence 99999999975 555443 467888999999999998864
No 149
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.84 E-value=4.7e-08 Score=93.78 Aligned_cols=113 Identities=12% Similarity=0.105 Sum_probs=79.7
Q ss_pred CCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------hhhh-cC---ee-e------------
Q psy4493 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------LLKK-KK---IC-L------------ 102 (323)
Q Consensus 47 tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------~l~~-~~---i~-l------------ 102 (323)
+|+|||+.+..++.. .+.+|+.+|+++|+.+ .+.+ .| +. +
T Consensus 169 ~GSGKTevyl~~i~~----------------~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~ 232 (665)
T PRK14873 169 PGEDWARRLAAAAAA----------------TLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRR 232 (665)
T ss_pred CCCcHHHHHHHHHHH----------------HHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHH
Confidence 599999988777765 2447999999999999 3332 22 22 1
Q ss_pred --eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccc-cCCCchHHHHhHHHHHhhCCCCCEEEEe
Q psy4493 103 --MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSS-WGHDFRPDYQYLSILKTMFPDVPILGLT 179 (323)
Q Consensus 103 --~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~-~~~~~r~~~~~l~~l~~~~~~~~~i~lS 179 (323)
....+..+|+|+|-.-+.. -..++++|||||=|.-+- ....-+.....+..++....+.++|+.|
T Consensus 233 w~~~~~G~~~IViGtRSAvFa------------P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgS 300 (665)
T PRK14873 233 WLAVLRGQARVVVGTRSAVFA------------PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGG 300 (665)
T ss_pred HHHHhCCCCcEEEEcceeEEe------------ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEEC
Confidence 4557788999999655542 235899999999995542 1112233345577777777799999999
Q ss_pred ecCChhHH
Q psy4493 180 ATATTKVM 187 (323)
Q Consensus 180 AT~~~~~~ 187 (323)
||++-+..
T Consensus 301 aTPSles~ 308 (665)
T PRK14873 301 HARTAEAQ 308 (665)
T ss_pred CCCCHHHH
Confidence 99997654
No 150
>KOG0386|consensus
Probab=98.62 E-value=1e-07 Score=91.67 Aligned_cols=83 Identities=12% Similarity=0.034 Sum_probs=72.3
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc---------------------ceeeecccccCCccEEEEc
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---------------------SIAFGLGIDKPNVRFVIHH 296 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~---------------------T~~~~~Gid~~~v~~Vi~~ 296 (323)
.+++++.||.-..--..+..+|.=++++-.-+-|....++ |.+.+.|+|....+.||.|
T Consensus 725 tgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviif 804 (1157)
T KOG0386|consen 725 TGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIF 804 (1157)
T ss_pred cCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEe
Confidence 6899999998888888888888877777777777777766 9999999999999999999
Q ss_pred cCCCCHhHHHHHhccCCCCCCCCC
Q psy4493 297 CLSKSMENFYQVSIAFGLGKHSFR 320 (323)
Q Consensus 297 ~~p~~~~~~~qr~GR~gR~g~~g~ 320 (323)
|.-+++-...|+--|+-|-|+.-.
T Consensus 805 dsdwnp~~d~qaqdrahrigq~~e 828 (1157)
T KOG0386|consen 805 DSDWNPHQDLQAQDRAHRIGQKKE 828 (1157)
T ss_pred cCCCCchhHHHHHHHHHHhhchhh
Confidence 999999999999999999887643
No 151
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.46 E-value=1e-06 Score=84.71 Aligned_cols=147 Identities=22% Similarity=0.194 Sum_probs=103.7
Q ss_pred CCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEec-CCchhHHHHHHHHHHHh-hcCCCcEEEEeCChh
Q psy4493 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIK-PAAQKDCLDELADLMSR-RFRNQSGIIYTTSIK 250 (323)
Q Consensus 173 ~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~-~~~~~~~iVF~~s~~ 250 (323)
....+||.|...+. .++...+++ .++..+.++|.++...... -...+.|+..+++.+.. +..++|+||-+.+.+
T Consensus 365 ~kl~gmTGTa~te~-~EF~~iY~l---~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie 440 (822)
T COG0653 365 PKLAGMTGTADTEE-EEFDVIYGL---DVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIE 440 (822)
T ss_pred hhhcCCCCcchhhh-hhhhhccCC---ceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCccee
Confidence 35667888876654 334444443 3445566667664332221 13356677787777764 458899999999999
Q ss_pred HHHHHHHHHHhCCCeEEeecCCCCCCc----------------ceeeecccccC---Cc--------cEEEEccCCCCHh
Q psy4493 251 ECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLGIDKP---NV--------RFVIHHCLSKSME 303 (323)
Q Consensus 251 ~~~~l~~~L~~~~~~v~~~h~~~~~~~----------------T~~~~~Gid~~---~v--------~~Vi~~~~p~~~~ 303 (323)
..+.+.+.|.+.|+....+++.-...| |+.++||.|+. +. -+||-..--.|..
T Consensus 441 ~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRR 520 (822)
T COG0653 441 KSELLSKLLRKAGIPHNVLNAKNHAREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRR 520 (822)
T ss_pred cchhHHHHHHhcCCCceeeccccHHHHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhH
Confidence 999999999999988766666655444 99999999985 21 1566666666766
Q ss_pred HHHHHhccCCCCCCCCCCCC
Q psy4493 304 NFYQVSIAFGLGKHSFRSRY 323 (323)
Q Consensus 304 ~~~qr~GR~gR~g~~g~~~~ 323 (323)
-=-|-.||+||.|-+|.|.|
T Consensus 521 IDnQLRGRsGRQGDpG~S~F 540 (822)
T COG0653 521 IDNQLRGRAGRQGDPGSSRF 540 (822)
T ss_pred HHHHhhcccccCCCcchhhh
Confidence 66799999999999998864
No 152
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.34 E-value=2.5e-06 Score=74.81 Aligned_cols=131 Identities=13% Similarity=0.150 Sum_probs=70.2
Q ss_pred CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC---CcEEEEccchh------hhhhcC----ee--e-
Q psy4493 39 KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK---KDAIIIMPTGK------LLKKKK----IC--L- 102 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~---~~~lv~~pTgs------~l~~~~----i~--l- 102 (323)
+.+++....|.|||...+..+... ....+. +.+||++|... .+.... .. +
T Consensus 26 ~g~lL~de~GlGKT~~~i~~~~~l--------------~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~~~~~~~~v~~~ 91 (299)
T PF00176_consen 26 RGGLLADEMGLGKTITAIALISYL--------------KNEFPQRGEKKTLIVVPSSLLSQWKEEIEKWFDPDSLRVIIY 91 (299)
T ss_dssp -EEEE---TTSSHHHHHHHHHHHH--------------HHCCTTSS-S-EEEEE-TTTHHHHHHHHHHHSGT-TS-EEEE
T ss_pred CCEEEEECCCCCchhhhhhhhhhh--------------hhccccccccceeEeeccchhhhhhhhhcccccccccccccc
Confidence 346667799999997666555421 000011 24899999955 222211 12 1
Q ss_pred ----------eccCCCeeEEEEcccccc--cchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhC
Q psy4493 103 ----------MTESSSLKLLYVSPEKLA--KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170 (323)
Q Consensus 103 ----------~~~~~~~~vii~Tp~~l~--~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~ 170 (323)
.......+++|+|.+.+. ......+.+.. .++++||+||+|.+-... ... ...+.. +
T Consensus 92 ~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~----~~~~~vIvDEaH~~k~~~---s~~---~~~l~~-l 160 (299)
T PF00176_consen 92 DGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQ----IKWDRVIVDEAHRLKNKD---SKR---YKALRK-L 160 (299)
T ss_dssp SSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT----SEEEEEEETTGGGGTTTT---SHH---HHHHHC-C
T ss_pred ccccccccccccccccceeeecccccccccccccccccccc----ccceeEEEeccccccccc---ccc---cccccc-c
Confidence 233567889999998886 11122223332 368999999999985422 111 222333 3
Q ss_pred CCCCEEEEeecCChhHHHHHHHHh
Q psy4493 171 PDVPILGLTATATTKVMLDVQKML 194 (323)
Q Consensus 171 ~~~~~i~lSAT~~~~~~~~i~~~l 194 (323)
....++++|||+-.....++...+
T Consensus 161 ~~~~~~lLSgTP~~n~~~dl~~~l 184 (299)
T PF00176_consen 161 RARYRWLLSGTPIQNSLEDLYSLL 184 (299)
T ss_dssp CECEEEEE-SS-SSSGSHHHHHHH
T ss_pred ccceEEeeccccccccccccccch
Confidence 466789999998766555544443
No 153
>KOG0392|consensus
Probab=98.32 E-value=1.3e-05 Score=79.16 Aligned_cols=81 Identities=9% Similarity=-0.022 Sum_probs=69.1
Q ss_pred CCcEEEEeCChhHHHHHHHHHHhC---CCeEEeecCCCCCCc--------------------ceeeecccccCCccEEEE
Q psy4493 239 NQSGIIYTTSIKECEDLREELRNR---GLRVSAYHAKLESNV--------------------SIAFGLGIDKPNVRFVIH 295 (323)
Q Consensus 239 ~~~~iVF~~s~~~~~~l~~~L~~~---~~~v~~~h~~~~~~~--------------------T~~~~~Gid~~~v~~Vi~ 295 (323)
++++||||+-+.....+...|.+. .+.-..+-|..++.+ |.+.+.|+|.-..+.||.
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVF 1419 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVF 1419 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEE
Confidence 468999999999999998888764 233346677777776 999999999999999999
Q ss_pred ccCCCCHhHHHHHhccCCCCCCCC
Q psy4493 296 HCLSKSMENFYQVSIAFGLGKHSF 319 (323)
Q Consensus 296 ~~~p~~~~~~~qr~GR~gR~g~~g 319 (323)
++=-|++..=+|-.-||-|-|+.-
T Consensus 1420 vEHDWNPMrDLQAMDRAHRIGQKr 1443 (1549)
T KOG0392|consen 1420 VEHDWNPMRDLQAMDRAHRIGQKR 1443 (1549)
T ss_pred EecCCCchhhHHHHHHHHhhcCce
Confidence 999999999999999999999863
No 154
>KOG0330|consensus
Probab=98.32 E-value=4.6e-06 Score=72.78 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=69.7
Q ss_pred EEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----eeccCCCeeEEEEcc
Q psy4493 42 IIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----LMTESSSLKLLYVSP 116 (323)
Q Consensus 42 ~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l~~~~~~~~vii~Tp 116 (323)
.....++.|..+.+++++.. .||+.|+++|.++||.+++|++++.+|.||| ......++ |......+..+|.||
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~-l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtP 137 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQE-LGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTP 137 (476)
T ss_pred hhcchhhcCcCHHHHHHHHH-hCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecC
Confidence 34558899999999999999 7899999999999999999999999999999 33333333 244556689999999
Q ss_pred cccccchhHHHHHHHH
Q psy4493 117 EKLAKSKSFMTKLQKM 132 (323)
Q Consensus 117 ~~l~~~~~~~~~l~~~ 132 (323)
.+-+. .+..+..+..
T Consensus 138 tRELA-~QI~e~fe~L 152 (476)
T KOG0330|consen 138 TRELA-QQIAEQFEAL 152 (476)
T ss_pred cHHHH-HHHHHHHHHh
Confidence 99874 3444444443
No 155
>KOG0952|consensus
Probab=98.29 E-value=5.5e-07 Score=87.23 Aligned_cols=200 Identities=14% Similarity=0.110 Sum_probs=115.6
Q ss_pred CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-----------hhhhcCeee-----
Q psy4493 39 KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-----------LLKKKKICL----- 102 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-----------~l~~~~i~l----- 102 (323)
.++++-+|||+||+..+..++...+.. ..+..+++++|-.+ .....|+++
T Consensus 944 ~~~~~g~ptgsgkt~~ae~a~~~~~~~--------------~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tg 1009 (1230)
T KOG0952|consen 944 LNFLLGAPTGSGKTVVAELAIFRALSY--------------YPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTG 1009 (1230)
T ss_pred hhhhhcCCccCcchhHHHHHHHHHhcc--------------CCCccEEEEcCCchhhcccccchhhhcccCCceeEeccC
Confidence 457788899999997766665432111 14567999999988 111224442
Q ss_pred -----eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhH----HHHHh-hCCC
Q psy4493 103 -----MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL----SILKT-MFPD 172 (323)
Q Consensus 103 -----~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l----~~l~~-~~~~ 172 (323)
.....+.+++|+||++.-.- ..-+......++++.+|+||.|++.+. .-|....+ ..+-. ..+.
T Consensus 1010 d~~pd~~~v~~~~~~ittpek~dgi---~Rsw~~r~~v~~v~~iv~de~hllg~~---rgPVle~ivsr~n~~s~~t~~~ 1083 (1230)
T KOG0952|consen 1010 DVTPDVKAVREADIVITTPEKWDGI---SRSWQTRKYVQSVSLIVLDEIHLLGED---RGPVLEVIVSRMNYISSQTEEP 1083 (1230)
T ss_pred ccCCChhheecCceEEcccccccCc---cccccchhhhccccceeecccccccCC---CcceEEEEeeccccCccccCcc
Confidence 12234678999999998641 112333445678999999999988763 11221111 01001 1124
Q ss_pred CCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecCC-----chhHHHHHHHHHHHhhcCCCcEEEEeC
Q psy4493 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPA-----AQKDCLDELADLMSRRFRNQSGIIYTT 247 (323)
Q Consensus 173 ~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~l~~~~~~~~~iVF~~ 247 (323)
.+.+++|--+.+ ..++.+||+..+..-+..+..+.++...+...+. ....+-....+.++.+.+..+++||+.
T Consensus 1084 vr~~glsta~~n--a~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~lifv~ 1161 (1230)
T KOG0952|consen 1084 VRYLGLSTALAN--ANDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIFVS 1161 (1230)
T ss_pred hhhhhHhhhhhc--cHHHHHHhCCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceEEEee
Confidence 567777655554 4678899988764111112222222222222221 112223345666776778899999999
Q ss_pred ChhHHHHHHHHHH
Q psy4493 248 SIKECEDLREELR 260 (323)
Q Consensus 248 s~~~~~~l~~~L~ 260 (323)
++.+...-+..|-
T Consensus 1162 srrqtrlta~~li 1174 (1230)
T KOG0952|consen 1162 SRRQTRLTALDLI 1174 (1230)
T ss_pred cccccccchHhHH
Confidence 9988766665554
No 156
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.01 E-value=2.3e-05 Score=72.49 Aligned_cols=85 Identities=15% Similarity=0.151 Sum_probs=61.9
Q ss_pred cCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----e-------eccCCCeeEE
Q psy4493 45 MPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----L-------MTESSSLKLL 112 (323)
Q Consensus 45 ~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l-------~~~~~~~~vi 112 (323)
..+.+|.++.+..++.+ +||..|+++|.++||.+++|+|++++||||+ .....-++ + ......+.++
T Consensus 9 ~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~l 87 (423)
T PRK04837 9 KFSDFALHPQVVEALEK-KGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRAL 87 (423)
T ss_pred CHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 35678899999999988 8999999999999999999999999999999 00000011 0 0112346899
Q ss_pred EEcccccccchhHHHHHHH
Q psy4493 113 YVSPEKLAKSKSFMTKLQK 131 (323)
Q Consensus 113 i~Tp~~l~~~~~~~~~l~~ 131 (323)
|.+|-+.+. .+....+..
T Consensus 88 il~PtreLa-~Qi~~~~~~ 105 (423)
T PRK04837 88 IMAPTRELA-VQIHADAEP 105 (423)
T ss_pred EECCcHHHH-HHHHHHHHH
Confidence 999998874 333334443
No 157
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.93 E-value=0.001 Score=60.73 Aligned_cols=204 Identities=11% Similarity=0.111 Sum_probs=121.8
Q ss_pred eccCCCeeEEEEcccccccchhHHHHHH-------HHHhhCCcceEEEecccccc--ccCCCchHHHHh-----------
Q psy4493 103 MTESSSLKLLYVSPEKLAKSKSFMTKLQ-------KMYKAGCLARIAIDEVHCCS--SWGHDFRPDYQY----------- 162 (323)
Q Consensus 103 ~~~~~~~~vii~Tp~~l~~~~~~~~~l~-------~~~~~~~v~~vVvDEah~~~--~~~~~~r~~~~~----------- 162 (323)
....-..||||++|=-|.. .+. ...++..|.++|||.||.+. .|.| ....+..
T Consensus 126 ys~Fy~SDIIiASPLGLr~------~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~H-v~~v~~~lN~~P~~~~~~ 198 (442)
T PF06862_consen 126 YSDFYSSDIIIASPLGLRM------IIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEH-VLHVFEHLNLQPKKSHDT 198 (442)
T ss_pred ecccccCCEEEEChHHHHH------HhccccccccccchhheeeeEeechhhHHHHhhHHH-HHHHHHHhccCCCCCCCC
Confidence 4555678999999977642 222 24566789999999999776 2431 1111111
Q ss_pred -HHHHHhhC-----C-CCCEEEEeecCChhHHHHHHHHh-CCCCcEEEecCC--------CCCCceeEEEecC-----Cc
Q psy4493 163 -LSILKTMF-----P-DVPILGLTATATTKVMLDVQKML-QIEDCVVIKAPF--------NRPNLFYEVRIKP-----AA 221 (323)
Q Consensus 163 -l~~l~~~~-----~-~~~~i~lSAT~~~~~~~~i~~~l-~~~~~~~~~~~~--------~~~~~~~~~~~~~-----~~ 221 (323)
+..++.++ . -.|.|++|+..+++....+.+.+ +......+.... -.+.+.......+ ..
T Consensus 199 DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~ 278 (442)
T PF06862_consen 199 DFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADD 278 (442)
T ss_pred CHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchh
Confidence 12222221 1 35899999999998876666533 222222221111 1122222222211 11
Q ss_pred hhHHHHH----HHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ce
Q psy4493 222 QKDCLDE----LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SI 279 (323)
Q Consensus 222 ~~~~~~~----l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~ 279 (323)
.+.+++. ++..+........+|||++|==.=..+-.+|++.++..+.+|...+..+ |.
T Consensus 279 ~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TE 358 (442)
T PF06862_consen 279 PDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTE 358 (442)
T ss_pred hhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEh
Confidence 2233333 3333332235689999999988888899999999999999999888888 10
Q ss_pred --eeecccccCCccEEEEccCCCCHhHHHHHhccCC
Q psy4493 280 --AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313 (323)
Q Consensus 280 --~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~g 313 (323)
-+=+=..+.+++.||.|++|..+.-|-..++-.+
T Consensus 359 R~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~ 394 (442)
T PF06862_consen 359 RFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLD 394 (442)
T ss_pred HHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhc
Confidence 1111233456999999999999877766665433
No 158
>PTZ00110 helicase; Provisional
Probab=97.93 E-value=5e-05 Score=72.32 Aligned_cols=85 Identities=21% Similarity=0.221 Sum_probs=60.4
Q ss_pred CCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--h-------hhhcCe-eeeccCCCeeEEEEc
Q psy4493 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--L-------LKKKKI-CLMTESSSLKLLYVS 115 (323)
Q Consensus 46 ~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~-------l~~~~i-~l~~~~~~~~vii~T 115 (323)
....|..+.+.+.|.+ +||+.|+++|.+++|.+++|+|+++++|||+ . +..... ........+.++|.+
T Consensus 132 f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~ 210 (545)
T PTZ00110 132 FEYTSFPDYILKSLKN-AGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLA 210 (545)
T ss_pred HhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEEC
Confidence 4456777889999988 8999999999999999999999999999999 1 111100 001122356789999
Q ss_pred ccccccchhHHHHHHHH
Q psy4493 116 PEKLAKSKSFMTKLQKM 132 (323)
Q Consensus 116 p~~l~~~~~~~~~l~~~ 132 (323)
|-+-+. .+....++..
T Consensus 211 PTreLa-~Qi~~~~~~~ 226 (545)
T PTZ00110 211 PTRELA-EQIREQCNKF 226 (545)
T ss_pred ChHHHH-HHHHHHHHHH
Confidence 988773 3444444443
No 159
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=97.84 E-value=5.9e-05 Score=70.37 Aligned_cols=85 Identities=15% Similarity=0.143 Sum_probs=61.1
Q ss_pred CCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh---------hhhhcCee-e-eccCCCeeEEEE
Q psy4493 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK---------LLKKKKIC-L-MTESSSLKLLYV 114 (323)
Q Consensus 46 ~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs---------~l~~~~i~-l-~~~~~~~~vii~ 114 (323)
...+|.++.+..+|.+ +||..|+++|.++|+.+++++|+++.+|||+ .+...... . ........++|.
T Consensus 3 f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 3 FDSLGLSPDILRAVAE-QGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred HHHcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 3467889999999998 8999999999999999999999999999999 11111000 0 011223578999
Q ss_pred cccccccchhHHHHHHHH
Q psy4493 115 SPEKLAKSKSFMTKLQKM 132 (323)
Q Consensus 115 Tp~~l~~~~~~~~~l~~~ 132 (323)
+|-+-+. .++.+.++..
T Consensus 82 ~PtreLa-~Qi~~~~~~~ 98 (456)
T PRK10590 82 TPTRELA-AQIGENVRDY 98 (456)
T ss_pred eCcHHHH-HHHHHHHHHH
Confidence 9988773 3444444443
No 160
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.82 E-value=7.3e-05 Score=71.54 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=62.1
Q ss_pred cCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh---------hhhhcCee--e-eccCCCeeEE
Q psy4493 45 MPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK---------LLKKKKIC--L-MTESSSLKLL 112 (323)
Q Consensus 45 ~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs---------~l~~~~i~--l-~~~~~~~~vi 112 (323)
.+..+|....+..+|.+ +||..|+++|.++||.+++|+|+++.+|||+ .+....-. + ......+.++
T Consensus 10 ~f~~l~l~~~l~~~L~~-~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 10 TFSSFDLHPALLAGLES-AGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred ChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 35677899999999988 8999999999999999999999999999999 11111000 0 1112246899
Q ss_pred EEcccccccchhHHHHHHH
Q psy4493 113 YVSPEKLAKSKSFMTKLQK 131 (323)
Q Consensus 113 i~Tp~~l~~~~~~~~~l~~ 131 (323)
|.+|-+-+. .+....+..
T Consensus 89 Il~PTreLa-~Qi~~~~~~ 106 (572)
T PRK04537 89 ILAPTRELA-IQIHKDAVK 106 (572)
T ss_pred EEeCcHHHH-HHHHHHHHH
Confidence 999998873 344444444
No 161
>KOG0921|consensus
Probab=97.82 E-value=0.00019 Score=69.16 Aligned_cols=126 Identities=17% Similarity=0.171 Sum_probs=73.5
Q ss_pred HHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC-----CcEEEEccchh--------hhhhcC
Q psy4493 33 NIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK-----KDAIIIMPTGK--------LLKKKK 99 (323)
Q Consensus 33 ~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~-----~~~lv~~pTgs--------~l~~~~ 99 (323)
.++..++-.++..-||-||+.++.+-|.+ +++++ .++.++-|+.- ..++.+
T Consensus 388 q~v~dn~v~~I~getgcgk~tq~aq~iLe----------------~~~~ns~g~~~na~v~qprrisaisiaerva~er~ 451 (1282)
T KOG0921|consen 388 QAVAENRVVIIKGETGCGKSTQVAQFLLE----------------SFLENSNGASFNAVVSQPRRISAISLAERVANERG 451 (1282)
T ss_pred HHHhcCceeeEeecccccchhHHHHHHHH----------------HHhhccccccccceeccccccchHHHHHHHHHhhH
Confidence 33444555666779999999887766644 33333 34566666654 111111
Q ss_pred eee------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHH
Q psy4493 100 ICL------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167 (323)
Q Consensus 100 i~l------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~ 167 (323)
-.+ ......--+++||-+.++. .... .+..+..+|+||.|+....+ +|-. ..+..++
T Consensus 452 e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr------~~e~--glrg~sh~i~deiherdv~~-dfll--~~lr~m~ 520 (1282)
T KOG0921|consen 452 EEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLR------MMEN--GLRGISHVIIDEIHERDVDT-DFVL--IVLREMI 520 (1282)
T ss_pred Hhhcccccccccccccccccccceeeeccchhhh------hhhh--cccccccccchhhhhhccch-HHHH--HHHHhhh
Confidence 110 1122334577888888874 2222 12367899999999876543 2222 2244566
Q ss_pred hhCCCCCEEEEeecCChh
Q psy4493 168 TMFPDVPILGLTATATTK 185 (323)
Q Consensus 168 ~~~~~~~~i~lSAT~~~~ 185 (323)
..+++..++++|||++..
T Consensus 521 ~ty~dl~v~lmsatIdTd 538 (1282)
T KOG0921|consen 521 STYRDLRVVLMSATIDTD 538 (1282)
T ss_pred ccchhhhhhhhhcccchh
Confidence 666788888888887754
No 162
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.78 E-value=0.00027 Score=69.18 Aligned_cols=126 Identities=14% Similarity=0.190 Sum_probs=73.1
Q ss_pred CEEEEeecCChh-HHHHHHHHhCCCC---cEEEe--cCCCCCC-ceeEEEecC-C--chhHHHHHHHHHHHhhc-CCCcE
Q psy4493 174 PILGLTATATTK-VMLDVQKMLQIED---CVVIK--APFNRPN-LFYEVRIKP-A--AQKDCLDELADLMSRRF-RNQSG 242 (323)
Q Consensus 174 ~~i~lSAT~~~~-~~~~i~~~l~~~~---~~~~~--~~~~~~~-~~~~~~~~~-~--~~~~~~~~l~~~l~~~~-~~~~~ 242 (323)
.+|++|||++.. ..+.+.+.+|+.+ ...+. .+++..+ ..+.+.... . ...+....+.+.+.+.. .++.+
T Consensus 458 ~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~~~gg~ 537 (697)
T PRK11747 458 GAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLEKHKGS 537 (697)
T ss_pred EEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCE
Confidence 468999999863 3355677888863 22222 2333212 222222111 1 22233334333332111 34458
Q ss_pred EEEeCChhHHHHHHHHHHhC-CCeEEeecCCCCCC-------------c------ceeeecccccCC--ccEEEEccCCC
Q psy4493 243 IIYTTSIKECEDLREELRNR-GLRVSAYHAKLESN-------------V------SIAFGLGIDKPN--VRFVIHHCLSK 300 (323)
Q Consensus 243 iVF~~s~~~~~~l~~~L~~~-~~~v~~~h~~~~~~-------------~------T~~~~~Gid~~~--v~~Vi~~~~p~ 300 (323)
+||++|.+..+.+++.|... +..+ ..++..+.. + |..+.+|||+|+ +++||...+|.
T Consensus 538 LVlFtSy~~l~~v~~~l~~~~~~~l-l~Q~~~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 538 LVLFASRRQMQKVADLLPRDLRLML-LVQGDQPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred EEEeCcHHHHHHHHHHHHHhcCCcE-EEeCCchHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEEcCCC
Confidence 99999999999999998743 3332 334433221 1 889999999986 78999988774
No 163
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=97.77 E-value=9.7e-05 Score=68.55 Aligned_cols=95 Identities=18% Similarity=0.147 Sum_probs=64.4
Q ss_pred CCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh---------hhhhcCeeeeccCCCeeEEEEcc
Q psy4493 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK---------LLKKKKICLMTESSSLKLLYVSP 116 (323)
Q Consensus 46 ~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs---------~l~~~~i~l~~~~~~~~vii~Tp 116 (323)
...+|....+.+.+.+ +||..|+++|.++++++++|+++++++|||+ .+....-......+...++|.+|
T Consensus 3 f~~l~l~~~l~~~l~~-~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 3 FSELELDESLLEALQD-KGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred HhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 3456788889999988 8999999999999999999999999999999 11111000012234568999999
Q ss_pred cccccchhHHHHHHHHHhhCCcceEE
Q psy4493 117 EKLAKSKSFMTKLQKMYKAGCLARIA 142 (323)
Q Consensus 117 ~~l~~~~~~~~~l~~~~~~~~v~~vV 142 (323)
-+.+. .+..+.+........++..+
T Consensus 82 t~eLa-~Q~~~~~~~l~~~~~~~v~~ 106 (434)
T PRK11192 82 TRELA-MQVADQARELAKHTHLDIAT 106 (434)
T ss_pred cHHHH-HHHHHHHHHHHccCCcEEEE
Confidence 88763 33333344332222344443
No 164
>KOG1002|consensus
Probab=97.77 E-value=0.0004 Score=62.83 Aligned_cols=78 Identities=9% Similarity=-0.006 Sum_probs=60.5
Q ss_pred CcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc--------------------ceeeecccccCCccEEEEccCC
Q psy4493 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------------SIAFGLGIDKPNVRFVIHHCLS 299 (323)
Q Consensus 240 ~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~--------------------T~~~~~Gid~~~v~~Vi~~~~p 299 (323)
-|.|||.+-..--..+.-.|.+.|+++.-+-|+|++.. -.+.+..+|+-..++|..+|+=
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 46688877777777777778888999999999999987 2344455778888999999987
Q ss_pred CCHhHHHHHhccCCCCCC
Q psy4493 300 KSMENFYQVSIAFGLGKH 317 (323)
Q Consensus 300 ~~~~~~~qr~GR~gR~g~ 317 (323)
+++..-.|--.|.-|-|+
T Consensus 719 WNpaVe~Qa~DRiHRIGQ 736 (791)
T KOG1002|consen 719 WNPAVEWQAQDRIHRIGQ 736 (791)
T ss_pred ccHHHHhhhhhhHHhhcC
Confidence 888776676666666665
No 165
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=97.76 E-value=8.7e-05 Score=70.31 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=58.6
Q ss_pred EEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh---------hhhhc-Cee--eeccCCCee
Q psy4493 43 IIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK---------LLKKK-KIC--LMTESSSLK 110 (323)
Q Consensus 43 ~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs---------~l~~~-~i~--l~~~~~~~~ 110 (323)
+......|.++.+...|.+ .||+.|+|+|.++|+.+++|+|+++++|||+ .+... ... -......+.
T Consensus 120 i~~f~~~~l~~~l~~~L~~-~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~ 198 (518)
T PLN00206 120 ILSFSSCGLPPKLLLNLET-AGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPL 198 (518)
T ss_pred hcCHHhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCce
Confidence 3445567889999999988 8999999999999999999999999999999 11110 000 011224568
Q ss_pred EEEEccccccc
Q psy4493 111 LLYVSPEKLAK 121 (323)
Q Consensus 111 vii~Tp~~l~~ 121 (323)
++|.+|-+-+.
T Consensus 199 aLIL~PTreLa 209 (518)
T PLN00206 199 AMVLTPTRELC 209 (518)
T ss_pred EEEEeCCHHHH
Confidence 99999988763
No 166
>KOG1803|consensus
Probab=97.75 E-value=0.00011 Score=67.95 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=44.8
Q ss_pred CCCCCChhHHHHHHHHhcCCC-eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 20 NLTDFRPNQLAAINIALLKKD-AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 20 ~~~~~~~~Q~~~~~~~~~~~~-~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
-.+.+-+.|.+++......++ .++..|+|.|||.-+...+.. .+.+++.++|++||..
T Consensus 182 ~~~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~q----------------lvk~~k~VLVcaPSn~ 240 (649)
T KOG1803|consen 182 FNKNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQ----------------LVKQKKRVLVCAPSNV 240 (649)
T ss_pred CCccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHH----------------HHHcCCeEEEEcCchH
Confidence 346677889899998888755 556779999999776666532 2457899999999998
No 167
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=97.71 E-value=7.8e-05 Score=71.95 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=62.8
Q ss_pred CCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----eeccCCCeeEEEEcccccc
Q psy4493 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----LMTESSSLKLLYVSPEKLA 120 (323)
Q Consensus 46 ~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l~~~~~~~~vii~Tp~~l~ 120 (323)
...+|.+..+.++|.+ +||..|+|+|.++|+.+++++++++.+|||+ ......++ +......+.++|.+|.+.+
T Consensus 8 f~~l~L~~~ll~al~~-~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreL 86 (629)
T PRK11634 8 FADLGLKAPILEALND-LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTREL 86 (629)
T ss_pred HhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHH
Confidence 5567899999999988 8999999999999999999999999999999 22222222 1222345688999999877
Q ss_pred cchhHHHHHHH
Q psy4493 121 KSKSFMTKLQK 131 (323)
Q Consensus 121 ~~~~~~~~l~~ 131 (323)
. .++.+.+..
T Consensus 87 a-~Qv~~~l~~ 96 (629)
T PRK11634 87 A-VQVAEAMTD 96 (629)
T ss_pred H-HHHHHHHHH
Confidence 3 344444444
No 168
>KOG4439|consensus
Probab=97.70 E-value=0.00038 Score=65.50 Aligned_cols=65 Identities=12% Similarity=-0.003 Sum_probs=52.5
Q ss_pred HHHHHHhCCCeEEeecCCCCCCc---------------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCC
Q psy4493 255 LREELRNRGLRVSAYHAKLESNV---------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313 (323)
Q Consensus 255 l~~~L~~~~~~v~~~h~~~~~~~---------------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~g 313 (323)
+...+++.|.....+||.....+ -.+.+.|+|+...+++|.+|+-+++.-=.|-.-|.-
T Consensus 762 v~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIY 841 (901)
T KOG4439|consen 762 VRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIY 841 (901)
T ss_pred HHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHH
Confidence 33455556777888899887776 345678899999999999999999988888888999
Q ss_pred CCCCCC
Q psy4493 314 LGKHSF 319 (323)
Q Consensus 314 R~g~~g 319 (323)
|.|+.-
T Consensus 842 R~GQkK 847 (901)
T KOG4439|consen 842 RMGQKK 847 (901)
T ss_pred HhcccC
Confidence 998764
No 169
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.70 E-value=0.00043 Score=67.75 Aligned_cols=142 Identities=15% Similarity=0.104 Sum_probs=86.8
Q ss_pred CCEEEEeecCChhHH-HHHHHHhCCCCcE--EEecC-CCCCCc-eeEEE-ecCC-----chhHHHHHHHHHHHhhcCCCc
Q psy4493 173 VPILGLTATATTKVM-LDVQKMLQIEDCV--VIKAP-FNRPNL-FYEVR-IKPA-----AQKDCLDELADLMSRRFRNQS 241 (323)
Q Consensus 173 ~~~i~lSAT~~~~~~-~~i~~~l~~~~~~--~~~~~-~~~~~~-~~~~~-~~~~-----~~~~~~~~l~~~l~~~~~~~~ 241 (323)
..+|++|||+.+... ..+...++..... ....+ ++.... ...+. ..+. ...+....+.+++.. .+++
T Consensus 404 ~~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~ 481 (654)
T COG1199 404 ASVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKA--SPGG 481 (654)
T ss_pred CcEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhh--cCCC
Confidence 458999999987542 3355555554433 11111 111111 11111 1111 122333344444443 4559
Q ss_pred EEEEeCChhHHHHHHHHHHhCCC-eEEeecCCCCCCc----------------ceeeecccccCC--ccEEEEccCCC--
Q psy4493 242 GIIYTTSIKECEDLREELRNRGL-RVSAYHAKLESNV----------------SIAFGLGIDKPN--VRFVIHHCLSK-- 300 (323)
Q Consensus 242 ~iVF~~s~~~~~~l~~~L~~~~~-~v~~~h~~~~~~~----------------T~~~~~Gid~~~--v~~Vi~~~~p~-- 300 (323)
++||++|-+..+.+++.+..... .....++..+..+ |..+++|||+|+ .+.||..++|.
T Consensus 482 ~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~ 561 (654)
T COG1199 482 VLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDEREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFPN 561 (654)
T ss_pred EEEEeccHHHHHHHHHHHhhcCccceeeecCCCcHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCCC
Confidence 99999999999999999987654 2345555555443 889999999986 57899888775
Q ss_pred ----------------------------CHhHHHHHhccCCCCC
Q psy4493 301 ----------------------------SMENFYQVSIAFGLGK 316 (323)
Q Consensus 301 ----------------------------~~~~~~qr~GR~gR~g 316 (323)
-+....|-+||+-|.-
T Consensus 562 p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~ 605 (654)
T COG1199 562 PDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSE 605 (654)
T ss_pred CCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccC
Confidence 2235789999999954
No 170
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=97.68 E-value=0.00012 Score=68.48 Aligned_cols=84 Identities=17% Similarity=0.220 Sum_probs=61.4
Q ss_pred CCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----eeccCCCeeEEEEcccccc
Q psy4493 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----LMTESSSLKLLYVSPEKLA 120 (323)
Q Consensus 46 ~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l~~~~~~~~vii~Tp~~l~ 120 (323)
...+|.+..+...+.+ +||..|+|+|.+|++.+++|+|+++++|||+ ......++ +........++|.+|.+-+
T Consensus 6 f~~l~l~~~l~~~l~~-~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreL 84 (460)
T PRK11776 6 FSTLPLPPALLANLNE-LGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTREL 84 (460)
T ss_pred hhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHH
Confidence 4567888999999988 8999999999999999999999999999999 11111111 1122234578889998877
Q ss_pred cchhHHHHHHH
Q psy4493 121 KSKSFMTKLQK 131 (323)
Q Consensus 121 ~~~~~~~~l~~ 131 (323)
. .+..+.++.
T Consensus 85 a-~Q~~~~~~~ 94 (460)
T PRK11776 85 A-DQVAKEIRR 94 (460)
T ss_pred H-HHHHHHHHH
Confidence 3 344444444
No 171
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.63 E-value=0.00025 Score=69.63 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=44.3
Q ss_pred CCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC--CcEEEEccchhhhh
Q psy4493 22 TDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK--KDAIIIMPTGKLLK 96 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~--~~~lv~~pTgs~l~ 96 (323)
..+.+.|.++++.+...+-.++..+.|.|||..+...+.. +.. .+ ..+++++|||....
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~--------------~~~--~~~~~~v~l~ApTg~AA~ 382 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIEL--------------AEE--LGGLLPVGLAAPTGRAAK 382 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHH--------------HHH--cCCCceEEEEeCchHHHH
Confidence 5688999999999988777888889999999765544432 111 23 56899999999444
No 172
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.60 E-value=0.00036 Score=66.64 Aligned_cols=124 Identities=19% Similarity=0.080 Sum_probs=68.1
Q ss_pred HHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhc---CCcEEEEcc
Q psy4493 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL---KKDAIIIMP 90 (323)
Q Consensus 14 ~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~---~~~~lv~~p 90 (323)
.+.+.+....-.++|..++..++.++-.++..+.|.|||..+...+..+ ....+ +..+.++||
T Consensus 136 ~l~~~~~~~~~~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l--------------~~~~~~~~~~~I~l~AP 201 (586)
T TIGR01447 136 ILENLFPLLNEQNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLAL--------------VKQSPKQGKLRIALAAP 201 (586)
T ss_pred HHHHhhccccccHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHH--------------HHhccccCCCcEEEECC
Confidence 3344443322237899999999988888889999999998877766541 11111 146999999
Q ss_pred chhhhhhcCee-------eec---cCCCeeEEEEcccccccchhH-HHHHHHHHhhCCcceEEEeccccccc
Q psy4493 91 TGKLLKKKKIC-------LMT---ESSSLKLLYVSPEKLAKSKSF-MTKLQKMYKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 91 Tgs~l~~~~i~-------l~~---~~~~~~vii~Tp~~l~~~~~~-~~~l~~~~~~~~v~~vVvDEah~~~~ 151 (323)
||-....+.-. +.. ......+-..|-.+++....- ............++++|||||-++..
T Consensus 202 TGkAA~rL~e~~~~~~~~l~~~~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~ 273 (586)
T TIGR01447 202 TGKAAARLAESLRKAVKNLAAAEALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL 273 (586)
T ss_pred cHHHHHHHHHHHHhhhcccccchhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH
Confidence 99832221111 100 000011224455555431000 00011111223678999999998854
No 173
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.59 E-value=0.0004 Score=66.56 Aligned_cols=70 Identities=20% Similarity=0.118 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCCC-CChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhc--CCcEE
Q psy4493 10 RVRSVLKSKFNLTD-FRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL--KKDAI 86 (323)
Q Consensus 10 ~~~~~l~~~~~~~~-~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~--~~~~l 86 (323)
...+.|...|+... .-++|+.++...+..+-.++..++|.|||..+...+... ....+ ...+.
T Consensus 138 ~~~~~l~~lf~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l--------------~~~~~~~~~~i~ 203 (615)
T PRK10875 138 LLRQTLDALFGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL--------------IQLADGERCRIR 203 (615)
T ss_pred HHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHH--------------HHhcCCCCcEEE
Confidence 46677777765432 348999999999988888899999999998877766541 11112 24689
Q ss_pred EEccchh
Q psy4493 87 IIMPTGK 93 (323)
Q Consensus 87 v~~pTgs 93 (323)
+++|||-
T Consensus 204 l~APTgk 210 (615)
T PRK10875 204 LAAPTGK 210 (615)
T ss_pred EECCcHH
Confidence 9999999
No 174
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.58 E-value=0.00058 Score=56.08 Aligned_cols=54 Identities=19% Similarity=0.267 Sum_probs=37.0
Q ss_pred CChhHHHHHHHHhcCCC--eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 24 FRPNQLAAINIALLKKD--AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 24 ~~~~Q~~~~~~~~~~~~--~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
+.+.|.+++..++..++ .++..|.|.|||..+...... +. ..+..+++++||+.
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~--------------~~--~~g~~v~~~apT~~ 57 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEA--------------LE--AAGKRVIGLAPTNK 57 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHH--------------HH--HTT--EEEEESSHH
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHH--------------HH--hCCCeEEEECCcHH
Confidence 56889999999976543 455679999999755443322 11 14688999999999
No 175
>KOG0331|consensus
Probab=97.57 E-value=0.0036 Score=58.03 Aligned_cols=198 Identities=16% Similarity=0.185 Sum_probs=113.6
Q ss_pred cCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----------eeccCCCeeEEE
Q psy4493 45 MPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----------LMTESSSLKLLY 113 (323)
Q Consensus 45 ~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----------l~~~~~~~~vii 113 (323)
+....|.++.+..+++. -||+.|+|+|.+++|.+++|+|++.++.||+ ...++.++ .......+.++|
T Consensus 92 ~f~~~~ls~~~~~~lk~-~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKE-QGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhcccccHHHHHHHHh-cCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 34567888888889988 7999999999999999999999999999999 22222222 133455788999
Q ss_pred EcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHH
Q psy4493 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKM 193 (323)
Q Consensus 114 ~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~ 193 (323)
.+|.+-+. .++..........-.++..++ . -|....++...+ . .... ..-||+.. ..++.+.
T Consensus 171 L~PTRELA-~QV~~~~~~~~~~~~~~~~cv------y-GG~~~~~Q~~~l---~---~gvd--iviaTPGR--l~d~le~ 232 (519)
T KOG0331|consen 171 LAPTRELA-VQVQAEAREFGKSLRLRSTCV------Y-GGAPKGPQLRDL---E---RGVD--VVIATPGR--LIDLLEE 232 (519)
T ss_pred EcCcHHHH-HHHHHHHHHHcCCCCccEEEE------e-CCCCccHHHHHH---h---cCCc--EEEeCChH--HHHHHHc
Confidence 99998874 333333333222112222222 1 122344544332 2 1232 34578665 2233332
Q ss_pred hCCCCcEEEecCCCCCCceeEEEecCCc--hhHHHHHHHHHHHhh-cCCCcEEEEeCCh-hHHHHHHHHHHhCCCeEEee
Q psy4493 194 LQIEDCVVIKAPFNRPNLFYEVRIKPAA--QKDCLDELADLMSRR-FRNQSGIIYTTSI-KECEDLREELRNRGLRVSAY 269 (323)
Q Consensus 194 l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~-~~~~~~iVF~~s~-~~~~~l~~~L~~~~~~v~~~ 269 (323)
...+...+.|.+....+. ...+-..+..++... -+..++|.|..|. +.++.++..+...-+++.+.
T Consensus 233 ----------g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig 302 (519)
T KOG0331|consen 233 ----------GSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVG 302 (519)
T ss_pred ----------CCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEec
Confidence 122233444444433321 112233344444422 1344799998885 57888888887754444444
Q ss_pred cC
Q psy4493 270 HA 271 (323)
Q Consensus 270 h~ 271 (323)
+.
T Consensus 303 ~~ 304 (519)
T KOG0331|consen 303 NK 304 (519)
T ss_pred ch
Confidence 33
No 176
>KOG0338|consensus
Probab=97.56 E-value=0.0013 Score=59.94 Aligned_cols=84 Identities=18% Similarity=0.188 Sum_probs=62.5
Q ss_pred CCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee-----e--eccCCCeeEEEEccccc
Q psy4493 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC-----L--MTESSSLKLLYVSPEKL 119 (323)
Q Consensus 48 g~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~-----l--~~~~~~~~vii~Tp~~l 119 (323)
.+.+|..+.+++.. +||..|+|+|..+||..+-|+|++.+|-||+ ...+.-++ | -......+|+|.+|-+-
T Consensus 185 ~mNLSRPlLka~~~-lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRE 263 (691)
T KOG0338|consen 185 SMNLSRPLLKACST-LGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRE 263 (691)
T ss_pred hcccchHHHHHHHh-cCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHH
Confidence 45566677788877 8999999999999999999999999999999 33333333 1 22245678999999988
Q ss_pred ccchhHHHHHHHHH
Q psy4493 120 AKSKSFMTKLQKMY 133 (323)
Q Consensus 120 ~~~~~~~~~l~~~~ 133 (323)
+. .+..+..+...
T Consensus 264 La-iQv~sV~~qla 276 (691)
T KOG0338|consen 264 LA-IQVHSVTKQLA 276 (691)
T ss_pred HH-HHHHHHHHHHH
Confidence 73 45555655543
No 177
>PTZ00424 helicase 45; Provisional
Probab=97.51 E-value=0.00031 Score=64.46 Aligned_cols=88 Identities=13% Similarity=0.065 Sum_probs=63.8
Q ss_pred EEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----eeccCCCeeEEEEcc
Q psy4493 42 IIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----LMTESSSLKLLYVSP 116 (323)
Q Consensus 42 ~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l~~~~~~~~vii~Tp 116 (323)
++..+...|.++.+...+.+ +|+..|+++|.++++.+++++++++.+|||+ .....-+. +........++|..|
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~-~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~P 104 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYS-YGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAP 104 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECC
Confidence 45567788999999999988 8999999999999999999999999999999 11000000 112234567999999
Q ss_pred cccccchhHHHHHHH
Q psy4493 117 EKLAKSKSFMTKLQK 131 (323)
Q Consensus 117 ~~l~~~~~~~~~l~~ 131 (323)
-+.+. .+....+..
T Consensus 105 t~~L~-~Q~~~~~~~ 118 (401)
T PTZ00424 105 TRELA-QQIQKVVLA 118 (401)
T ss_pred CHHHH-HHHHHHHHH
Confidence 88763 334444443
No 178
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00027 Score=66.76 Aligned_cols=88 Identities=20% Similarity=0.191 Sum_probs=65.6
Q ss_pred EcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCeee----ec-cCCCee-EEEEcc
Q psy4493 44 IMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKICL----MT-ESSSLK-LLYVSP 116 (323)
Q Consensus 44 ~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~l----~~-~~~~~~-vii~Tp 116 (323)
..+..+|.+..+..++.+ .||..|+|+|..+||.++.|+|+++.++||+ .....++++ .. ...... .+|.+|
T Consensus 29 ~~F~~l~l~~~ll~~l~~-~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~P 107 (513)
T COG0513 29 PEFASLGLSPELLQALKD-LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAP 107 (513)
T ss_pred CCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECC
Confidence 346688899999999999 9999999999999999999999999999999 333333331 11 111111 889999
Q ss_pred cccccchhHHHHHHHHH
Q psy4493 117 EKLAKSKSFMTKLQKMY 133 (323)
Q Consensus 117 ~~l~~~~~~~~~l~~~~ 133 (323)
-+-+. .++.+.++...
T Consensus 108 TRELA-~Qi~~~~~~~~ 123 (513)
T COG0513 108 TRELA-VQIAEELRKLG 123 (513)
T ss_pred CHHHH-HHHHHHHHHHH
Confidence 99874 45555555543
No 179
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.47 E-value=0.0024 Score=55.08 Aligned_cols=149 Identities=13% Similarity=0.086 Sum_probs=85.6
Q ss_pred CCCChhHHHHHHHHh----------cCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCC-cEEEEcc
Q psy4493 22 TDFRPNQLAAINIAL----------LKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKK-DAIIIMP 90 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~----------~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~-~~lv~~p 90 (323)
..+.+.|.+++--+. .+.-+++=-.||.||-..+...+.+ .+++|+ ..+.+..
T Consensus 36 g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~----------------n~l~Gr~r~vwvS~ 99 (303)
T PF13872_consen 36 GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILE----------------NWLRGRKRAVWVSV 99 (303)
T ss_pred ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHH----------------HHHcCCCceEEEEC
Confidence 456778888665442 1222445559999998766655543 355665 4666666
Q ss_pred chh-------hhhhcCee------e------eccCCCeeEEEEcccccccch----hHHHHHHHHH---hhCCcceEEEe
Q psy4493 91 TGK-------LLKKKKIC------L------MTESSSLKLLYVSPEKLAKSK----SFMTKLQKMY---KAGCLARIAID 144 (323)
Q Consensus 91 Tgs-------~l~~~~i~------l------~~~~~~~~vii~Tp~~l~~~~----~~~~~l~~~~---~~~~v~~vVvD 144 (323)
... .+...|.. + ........|+++|-..|.... ....+++... ....=.+||+|
T Consensus 100 s~dL~~Da~RDl~DIG~~~i~v~~l~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfD 179 (303)
T PF13872_consen 100 SNDLKYDAERDLRDIGADNIPVHPLNKFKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFD 179 (303)
T ss_pred ChhhhhHHHHHHHHhCCCcccceechhhccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEec
Confidence 655 33333332 1 112335568999988876421 1222333211 01122478999
Q ss_pred ccccccccCCC---chHHHHhHHHHHhhCCCCCEEEEeecCChhH
Q psy4493 145 EVHCCSSWGHD---FRPDYQYLSILKTMFPDVPILGLTATATTKV 186 (323)
Q Consensus 145 Eah~~~~~~~~---~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 186 (323)
|||..-....+ -...-.....++..+|+.+++.+|||-..+.
T Consensus 180 EcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep 224 (303)
T PF13872_consen 180 ECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASEP 224 (303)
T ss_pred cchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCCC
Confidence 99988653211 1112233455788889999999999977654
No 180
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.46 E-value=0.0006 Score=64.07 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=60.2
Q ss_pred CCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----e-------eccCCCeeEEE
Q psy4493 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----L-------MTESSSLKLLY 113 (323)
Q Consensus 46 ~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l-------~~~~~~~~vii 113 (323)
+..++.++.+..+|.+ +||..|+++|.++++.+++|+|+++.+|||+ .-...-+. + ....+...++|
T Consensus 89 f~~~~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLi 167 (475)
T PRK01297 89 FHDFNLAPELMHAIHD-LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALI 167 (475)
T ss_pred HhHCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEE
Confidence 3457788999999998 9999999999999999999999999999999 11011111 0 01123567899
Q ss_pred EcccccccchhHHHHHHH
Q psy4493 114 VSPEKLAKSKSFMTKLQK 131 (323)
Q Consensus 114 ~Tp~~l~~~~~~~~~l~~ 131 (323)
..|-+.+. .+....++.
T Consensus 168 l~PtreLa-~Q~~~~~~~ 184 (475)
T PRK01297 168 IAPTRELV-VQIAKDAAA 184 (475)
T ss_pred EeCcHHHH-HHHHHHHHH
Confidence 99988874 333334443
No 181
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=97.44 E-value=0.00082 Score=55.39 Aligned_cols=83 Identities=18% Similarity=0.105 Sum_probs=59.0
Q ss_pred CCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchhh-hhhcCe---e-eecc--CCCeeEEEEccccc
Q psy4493 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL-LKKKKI---C-LMTE--SSSLKLLYVSPEKL 119 (323)
Q Consensus 47 tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs~-l~~~~i---~-l~~~--~~~~~vii~Tp~~l 119 (323)
.+++.++.+.+.+.+ +|++.|+++|.++++.+.+++++++.+|||+. -...-+ . +... ....+++|.+|..-
T Consensus 2 ~~~~~~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 2 EELGLSPELLRGIYA-LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CcCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 466778888889988 89999999999999999999999999999980 000000 0 1111 34568899999876
Q ss_pred ccchhHHHHHHH
Q psy4493 120 AKSKSFMTKLQK 131 (323)
Q Consensus 120 ~~~~~~~~~l~~ 131 (323)
+ ..++...++.
T Consensus 81 L-~~q~~~~~~~ 91 (203)
T cd00268 81 L-ALQIAEVARK 91 (203)
T ss_pred H-HHHHHHHHHH
Confidence 6 2344344444
No 182
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=97.41 E-value=0.00068 Score=66.23 Aligned_cols=77 Identities=29% Similarity=0.332 Sum_probs=55.7
Q ss_pred hHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh------------hhhhcCeeeeccCCCeeEEEEccccc
Q psy4493 52 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK------------LLKKKKICLMTESSSLKLLYVSPEKL 119 (323)
Q Consensus 52 t~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs------------~l~~~~i~l~~~~~~~~vii~Tp~~l 119 (323)
...+.++++.. |..||+.|.+|+|.+.+|+|+|++||||+ .+.+.+ . ........++|.||=+.
T Consensus 9 ~~~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-~-~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 9 DPRVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG-K-GKLEDGIYALYISPLKA 84 (814)
T ss_pred CHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc-C-CCCCCceEEEEeCcHHH
Confidence 34566777774 89999999999999999999999999999 222221 0 12345689999999999
Q ss_pred ccchhHHHHHHHHH
Q psy4493 120 AKSKSFMTKLQKMY 133 (323)
Q Consensus 120 ~~~~~~~~~l~~~~ 133 (323)
++. .....++...
T Consensus 85 Ln~-Di~~rL~~~~ 97 (814)
T COG1201 85 LNN-DIRRRLEEPL 97 (814)
T ss_pred HHH-HHHHHHHHHH
Confidence 853 3333444433
No 183
>KOG0348|consensus
Probab=97.39 E-value=0.00042 Score=63.26 Aligned_cols=87 Identities=18% Similarity=0.222 Sum_probs=64.0
Q ss_pred EcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh------------hhhhcCeeeeccCCCeeE
Q psy4493 44 IMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK------------LLKKKKICLMTESSSLKL 111 (323)
Q Consensus 44 ~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs------------~l~~~~i~l~~~~~~~~v 111 (323)
....+.|.+..+++.|...|++..|+.+|+++||.+++|+|++|-++||+ .|+.+.-.+....+.+-+
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~AL 215 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYAL 215 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEE
Confidence 34668999999999999999999999999999999999999999999999 344443334444444444
Q ss_pred EEEcccccccchhHHHHHHHH
Q psy4493 112 LYVSPEKLAKSKSFMTKLQKM 132 (323)
Q Consensus 112 ii~Tp~~l~~~~~~~~~l~~~ 132 (323)
+ ..|-+-+ ..+.++.+...
T Consensus 216 V-ivPTREL-~~Q~y~~~qKL 234 (708)
T KOG0348|consen 216 V-IVPTREL-ALQIYETVQKL 234 (708)
T ss_pred E-EechHHH-HHHHHHHHHHH
Confidence 4 4455554 22444455443
No 184
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.37 E-value=0.0041 Score=62.98 Aligned_cols=39 Identities=13% Similarity=-0.092 Sum_probs=33.3
Q ss_pred ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCC
Q psy4493 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKH 317 (323)
Q Consensus 278 T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~ 317 (323)
++.+-.|.|.| +-+.+..|-|.---..+|-+-|+.|.-.
T Consensus 600 ~dmlLTGFDaP-~L~TmYvDK~Lk~H~L~QAisRtNR~~~ 638 (962)
T COG0610 600 VDMLLTGFDAP-CLNTLYVDKPLKYHNLIQAISRTNRVFP 638 (962)
T ss_pred EccccccCCcc-ccceEEeccccccchHHHHHHHhccCCC
Confidence 99999999999 6677888888776789999999999743
No 185
>PRK02362 ski2-like helicase; Provisional
Probab=97.34 E-value=0.003 Score=62.68 Aligned_cols=75 Identities=20% Similarity=0.290 Sum_probs=54.9
Q ss_pred CCCCchHHHHHHHHhcCCCCCCCcchHHHHHH-HhcCCcEEEEccchh-hhhhcCee-eeccCCCeeEEEEcccccccc
Q psy4493 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINI-ALLKKDAIIIMPTGK-LLKKKKIC-LMTESSSLKLLYVSPEKLAKS 122 (323)
Q Consensus 47 tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~-~~~~~~~lv~~pTgs-~l~~~~i~-l~~~~~~~~vii~Tp~~l~~~ 122 (323)
+..|.++.+...+++ .|+..|+|+|.++++. +..|+|+++++|||+ ......+. +.......+++|.+|-+.+..
T Consensus 4 ~~l~lp~~~~~~l~~-~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~ 81 (737)
T PRK02362 4 AELPLPEGVIEFYEA-EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALAS 81 (737)
T ss_pred hhcCCCHHHHHHHHh-CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHH
Confidence 456788889999988 8999999999999998 778999999999999 00000011 011112457899999988743
No 186
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=97.32 E-value=0.00027 Score=70.98 Aligned_cols=50 Identities=32% Similarity=0.617 Sum_probs=46.9
Q ss_pred EcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 44 IMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 44 ~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
...+++.++..+...++..||++.|+|+|.++|++++.|+|+++++|||+
T Consensus 437 W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGS 486 (1195)
T PLN03137 437 WSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGG 486 (1195)
T ss_pred ccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 44568999999999999999999999999999999999999999999999
No 187
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.31 E-value=0.0033 Score=61.97 Aligned_cols=125 Identities=13% Similarity=0.119 Sum_probs=71.1
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCcEEEecCC--CCCCceeEEEe-cC-----------CchhHHHHHHHHHHHhh--c
Q psy4493 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPF--NRPNLFYEVRI-KP-----------AAQKDCLDELADLMSRR--F 237 (323)
Q Consensus 174 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~--~~~~~~~~~~~-~~-----------~~~~~~~~~l~~~l~~~--~ 237 (323)
.+|++|||+++ .+.+...||+..+.....+. .+.+....+.. .+ ....+....+.+.+.+. .
T Consensus 443 svil~SgTL~p--~~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~~ 520 (705)
T TIGR00604 443 SVILASGTLSP--LDAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKI 520 (705)
T ss_pred EEEEecccCCc--HHHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhhc
Confidence 36899999998 45667888875543322211 11222222211 11 11123334444444321 1
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCe------EEeecCC--CCCCc--------------------c--eeeeccccc
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLR------VSAYHAK--LESNV--------------------S--IAFGLGIDK 287 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~------v~~~h~~--~~~~~--------------------T--~~~~~Gid~ 287 (323)
..+.+|||++|-..-+.+++.+.+.|.. ..++.-+ ....+ + ..+++|||+
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf 600 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDF 600 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCcccc
Confidence 4578999999999999888888754320 1112111 11111 3 568999999
Q ss_pred CC--ccEEEEccCCC
Q psy4493 288 PN--VRFVIHHCLSK 300 (323)
Q Consensus 288 ~~--v~~Vi~~~~p~ 300 (323)
++ ++.||..++|.
T Consensus 601 ~~~~~r~ViivGlPf 615 (705)
T TIGR00604 601 CDDLGRAVIMVGIPY 615 (705)
T ss_pred CCCCCcEEEEEccCC
Confidence 97 78999999886
No 188
>KOG1131|consensus
Probab=97.26 E-value=0.0018 Score=59.09 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=33.9
Q ss_pred hcCCCCCChhHHHHHHHH---hc-CCCeEEEcCCCCCchHHHHHHHHh
Q psy4493 18 KFNLTDFRPNQLAAINIA---LL-KKDAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 18 ~~~~~~~~~~Q~~~~~~~---~~-~~~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
.|......|+|..-+... ++ +.+.++.||+|.|||..+.+.+-.
T Consensus 11 ~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~a 58 (755)
T KOG1131|consen 11 YFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIA 58 (755)
T ss_pred ecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHH
Confidence 345566788888855433 43 567999999999999999988877
No 189
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.23 E-value=0.0054 Score=61.10 Aligned_cols=39 Identities=21% Similarity=-0.084 Sum_probs=34.7
Q ss_pred ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCC
Q psy4493 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGK 316 (323)
Q Consensus 278 T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g 316 (323)
-.++.+|-|.|+|=.++-++-..|...-.|.+||+.|.-
T Consensus 508 ~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~ 546 (986)
T PRK15483 508 KWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLP 546 (986)
T ss_pred hHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceecc
Confidence 468999999999988888888888888999999999973
No 190
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=97.20 E-value=0.00089 Score=66.07 Aligned_cols=72 Identities=15% Similarity=0.142 Sum_probs=54.6
Q ss_pred CCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee-e--eccCCCeeEEEEccccccc
Q psy4493 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC-L--MTESSSLKLLYVSPEKLAK 121 (323)
Q Consensus 49 ~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~-l--~~~~~~~~vii~Tp~~l~~ 121 (323)
...+..+.++|.+ .|++.|+++|.++|+.+++|+|+++.+|||| ......++ | ........++|.+|-+-+.
T Consensus 19 ~~l~~~l~~~L~~-~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa 94 (742)
T TIGR03817 19 AWAHPDVVAALEA-AGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALA 94 (742)
T ss_pred CcCCHHHHHHHHH-cCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHH
Confidence 3456788889987 8999999999999999999999999999999 11111122 0 0112356899999998874
No 191
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.17 E-value=0.0057 Score=58.74 Aligned_cols=125 Identities=11% Similarity=0.045 Sum_probs=79.4
Q ss_pred CEEEEeecCChhH------HHHHHHHhCCCCcEEE-ecCCC----CCCc-eeEEEe-----cCCch--------------
Q psy4493 174 PILGLTATATTKV------MLDVQKMLQIEDCVVI-KAPFN----RPNL-FYEVRI-----KPAAQ-------------- 222 (323)
Q Consensus 174 ~~i~lSAT~~~~~------~~~i~~~l~~~~~~~~-~~~~~----~~~~-~~~~~~-----~~~~~-------------- 222 (323)
.+|+.|||+.... -+.+.+.+|++..... ..+++ ...+ .+++.. .+...
T Consensus 373 ~~I~TSATL~v~~~~~~~~F~~f~~~lGL~~~~l~~~SPFd~~y~~qa~~~LyvP~~~~~~lP~p~~~~~~~~~~~~~~~ 452 (636)
T TIGR03117 373 GAIIVSATLYLPDRFGQMSCDYLKRVLSLPLSRLDTPSPIVAPWVRNAIPHLHVPNAKARFLRPVGKDEQGDANLQEAER 452 (636)
T ss_pred eEEEEccccccCCcCCCcCcHHHHHhcCCCccceeCCCCCCchhHhcCceEEEEcCccccCCCCCCCCcccchhhhcchh
Confidence 5799999998644 4778888998644222 23455 2221 122220 11111
Q ss_pred ---hHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCC-Cc-------------------ce
Q psy4493 223 ---KDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES-NV-------------------SI 279 (323)
Q Consensus 223 ---~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~-~~-------------------T~ 279 (323)
+.....+.+++.. .+++++|.+.|....+.+++.|...---.....|..+. .+ |+
T Consensus 453 ~~~~~~~~~~~~~~~~--~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~~~~~l~~~f~~~~~~~~~~vL~gt~ 530 (636)
T TIGR03117 453 TWLENVSLSTAAILRK--AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKNRLASAEQQFLALYANGIQPVLIAAG 530 (636)
T ss_pred hHHHHHHHHHHHHHHH--cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCccHHHHHHHHHHhhcCCCCcEEEeCC
Confidence 1234455555553 67899999999999999999997542123445555432 11 99
Q ss_pred eeeccccc----------CCccEEEEccCCC
Q psy4493 280 AFGLGIDK----------PNVRFVIHHCLSK 300 (323)
Q Consensus 280 ~~~~Gid~----------~~v~~Vi~~~~p~ 300 (323)
.+.+|||+ ..+++||...+|.
T Consensus 531 sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 531 GAWTGIDLTHKPVSPDKDNLLTDLIITCAPF 561 (636)
T ss_pred ccccccccCCccCCCCCCCcccEEEEEeCCC
Confidence 99999999 2488999988773
No 192
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.14 E-value=0.00031 Score=65.86 Aligned_cols=61 Identities=36% Similarity=0.493 Sum_probs=43.7
Q ss_pred HHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCeeeeccCCCeeEEEEcccccc
Q psy4493 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKICLMTESSSLKLLYVSPEKLA 120 (323)
Q Consensus 58 ~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~l~~~~~~~~vii~Tp~~l~ 120 (323)
.|++.||++.|+|+|.++|+++++|+++++++|||+ .-....++... . ....+|.+|-+.+
T Consensus 2 ~l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~-~-~~~~lVi~P~~~L 63 (470)
T TIGR00614 2 ILKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC-S-DGITLVISPLISL 63 (470)
T ss_pred hhHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH-c-CCcEEEEecHHHH
Confidence 467789999999999999999999999999999999 11001111000 1 2246777887765
No 193
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=97.09 E-value=0.00041 Score=66.97 Aligned_cols=37 Identities=43% Similarity=0.718 Sum_probs=35.2
Q ss_pred HHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 57 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 57 ~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
..|++.||++.|+++|.++|++++.|+|+++++|||+
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~ 39 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGG 39 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 4678889999999999999999999999999999999
No 194
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.06 E-value=0.0059 Score=52.77 Aligned_cols=117 Identities=17% Similarity=0.224 Sum_probs=64.3
Q ss_pred CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--------hhhhcCeeeeccCCCee
Q psy4493 39 KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--------LLKKKKICLMTESSSLK 110 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--------~l~~~~i~l~~~~~~~~ 110 (323)
.+++++.+|+.|||..+.+-... +.-. ..+-+ ..+ .-+.+.+|.+. .+.++|.+.....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~-hp~~-~d~~~-~~~------PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~---- 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRL-HPPQ-SDEDA-ERI------PVVYVQMPPEPDERRFYSAILEALGAPYRPRD---- 128 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHH-CCCC-CCCCC-ccc------cEEEEecCCCCChHHHHHHHHHHhCcccCCCC----
Confidence 46899999999999876555543 2211 00111 111 23688888887 5555555421111
Q ss_pred EEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCC--CCCEEEEeec
Q psy4493 111 LLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP--DVPILGLTAT 181 (323)
Q Consensus 111 vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~--~~~~i~lSAT 181 (323)
+...+. ......++. -+++++||||+|.++... .+.+-..+..++.+.+ ..++|++ .|
T Consensus 129 ----~~~~~~--~~~~~llr~----~~vrmLIIDE~H~lLaGs--~~~qr~~Ln~LK~L~NeL~ipiV~v-Gt 188 (302)
T PF05621_consen 129 ----RVAKLE--QQVLRLLRR----LGVRMLIIDEFHNLLAGS--YRKQREFLNALKFLGNELQIPIVGV-GT 188 (302)
T ss_pred ----CHHHHH--HHHHHHHHH----cCCcEEEeechHHHhccc--HHHHHHHHHHHHHHhhccCCCeEEe-cc
Confidence 122221 111223333 489999999999987633 4444333445555544 6677766 44
No 195
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.03 E-value=0.0029 Score=57.21 Aligned_cols=101 Identities=12% Similarity=0.075 Sum_probs=58.5
Q ss_pred CChhHHHHHHHH------hcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchhhhhh
Q psy4493 24 FRPNQLAAINIA------LLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKK 97 (323)
Q Consensus 24 ~~~~Q~~~~~~~------~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs~l~~ 97 (323)
+.+.|+.+++.+ ..+..+.+..|-|.|||.-+...... + ...++.++++||||.+...
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~-~---------------~~~~~~~~~~a~tg~AA~~ 65 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDY-L---------------RSRGKKVLVTAPTGIAAFN 65 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHH-h---------------ccccceEEEecchHHHHHh
Confidence 467888888777 56677889999999999443322221 0 0145679999999984433
Q ss_pred c--Ceee------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccc
Q psy4493 98 K--KICL------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 98 ~--~i~l------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~ 151 (323)
. |..+ .......... .+... ...... ...++++|+||+=++..
T Consensus 66 i~~G~T~hs~f~i~~~~~~~~~~--~~~~~---~~~~~~------l~~~~~lIiDEism~~~ 116 (364)
T PF05970_consen 66 IPGGRTIHSFFGIPINNNEKSQC--KISKN---SRLRER------LRKADVLIIDEISMVSA 116 (364)
T ss_pred ccCCcchHHhcCccccccccccc--ccccc---chhhhh------hhhheeeecccccchhH
Confidence 3 4432 1111111111 11111 111112 34788999999998865
No 196
>KOG0391|consensus
Probab=97.02 E-value=0.0026 Score=63.31 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=81.5
Q ss_pred CCChhHHHHHHHH----hcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCc---EEEEccchh--
Q psy4493 23 DFRPNQLAAINIA----LLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD---AIIIMPTGK-- 93 (323)
Q Consensus 23 ~~~~~Q~~~~~~~----~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~---~lv~~pTgs-- 93 (323)
.+|.+|.-.+... .++-+.|+..-.|.|||.+.++.|..+ .++..+ =||++||.-
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhL----------------ACeegnWGPHLIVVpTsviL 678 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHL----------------ACEEGNWGPHLIVVPTSVIL 678 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHH----------------HhcccCCCCceEEeechhhh
Confidence 3556676655433 245678888899999997766666441 122222 488889876
Q ss_pred ----hhhhc--Ceee----------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccc
Q psy4493 94 ----LLKKK--KICL----------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 94 ----~l~~~--~i~l----------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~ 151 (323)
.+++. |..+ ..+.+.++|.|++-..+.. .+. .+...++.++|+||||.+-.
T Consensus 679 nWEMElKRwcPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~q------d~~-AFkrkrWqyLvLDEaqnIKn 751 (1958)
T KOG0391|consen 679 NWEMELKRWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQ------DLT-AFKRKRWQYLVLDEAQNIKN 751 (1958)
T ss_pred hhhHHHhhhCCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHh------HHH-HHHhhccceeehhhhhhhcc
Confidence 22222 1221 4556778999988766653 222 23345899999999999965
Q ss_pred cCCCchHHHHhHHHHHhhCCCCCEEEEeecCChh
Q psy4493 152 WGHDFRPDYQYLSILKTMFPDVPILGLTATATTK 185 (323)
Q Consensus 152 ~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 185 (323)
|+..-.+ .+.. ++.-+.++||.|+-.+
T Consensus 752 ----fksqrWQ--Alln-fnsqrRLLLtgTPLqN 778 (1958)
T KOG0391|consen 752 ----FKSQRWQ--ALLN-FNSQRRLLLTGTPLQN 778 (1958)
T ss_pred ----hhHHHHH--HHhc-cchhheeeecCCchhh
Confidence 4443211 1222 2355788999997644
No 197
>KOG0334|consensus
Probab=96.96 E-value=0.0012 Score=64.82 Aligned_cols=100 Identities=18% Similarity=0.137 Sum_probs=70.5
Q ss_pred CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----------eeccCCC
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----------LMTESSS 108 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----------l~~~~~~ 108 (323)
+.-+..++-.|.+..+...+++ +|+..++++|.+|||+++.|+++|.++.||+ ..-++..+ +.... .
T Consensus 361 pkpv~sW~q~gl~~~il~tlkk-l~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gd-G 438 (997)
T KOG0334|consen 361 PKPVTSWTQCGLSSKILETLKK-LGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGD-G 438 (997)
T ss_pred CcccchHhhCCchHHHHHHHHH-hcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCC-C
Confidence 3556778999999999999976 9999999999999999999999999999999 11122121 12223 5
Q ss_pred eeEEEEcccccccchhHHHHHHHHHhhCCcceEEEe
Q psy4493 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAID 144 (323)
Q Consensus 109 ~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvD 144 (323)
+--+|++|.+=+ ..+....++.+.. .++..+++
T Consensus 439 Pi~li~aPtrel-a~QI~r~~~kf~k--~l~ir~v~ 471 (997)
T KOG0334|consen 439 PIALILAPTREL-AMQIHREVRKFLK--LLGIRVVC 471 (997)
T ss_pred ceEEEEcCCHHH-HHHHHHHHHHHHh--hcCceEEE
Confidence 556777888776 3344444444322 35555554
No 198
>KOG0345|consensus
Probab=96.94 E-value=0.003 Score=56.99 Aligned_cols=79 Identities=20% Similarity=0.214 Sum_probs=57.0
Q ss_pred chHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----e-----eccCCCeeEEEEcccccc
Q psy4493 51 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----L-----MTESSSLKLLYVSPEKLA 120 (323)
Q Consensus 51 kt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l-----~~~~~~~~vii~Tp~~l~ 120 (323)
++.++..++.. +||..++|+|..+||.+++++|++|-+|||| ...+.-++ + ....+...-+|.||-+-+
T Consensus 13 L~~~l~~~l~~-~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTREL 91 (567)
T KOG0345|consen 13 LSPWLLEALDE-SGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTREL 91 (567)
T ss_pred ccHHHHHHHHh-cCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHH
Confidence 55888889888 8999999999999999999999999999999 11111111 0 122335677888998887
Q ss_pred cchhHHHHHHH
Q psy4493 121 KSKSFMTKLQK 131 (323)
Q Consensus 121 ~~~~~~~~l~~ 131 (323)
+.+..+.+..
T Consensus 92 -a~QI~~V~~~ 101 (567)
T KOG0345|consen 92 -ARQIREVAQP 101 (567)
T ss_pred -HHHHHHHHHH
Confidence 3344444443
No 199
>KOG0336|consensus
Probab=96.88 E-value=0.0073 Score=53.70 Aligned_cols=67 Identities=19% Similarity=0.166 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh----hhhhcCee-e------eccCCCeeEEEEcccccc
Q psy4493 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----LLKKKKIC-L------MTESSSLKLLYVSPEKLA 120 (323)
Q Consensus 53 ~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs----~l~~~~i~-l------~~~~~~~~vii~Tp~~l~ 120 (323)
..+...+++ .||.+|+|+|.+|+|.+++|.|.+.+|.||+ ...-.|+. + ......+.+++.||-+-+
T Consensus 229 pevmenIkK-~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreL 306 (629)
T KOG0336|consen 229 PEVMENIKK-TGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTREL 306 (629)
T ss_pred HHHHHHHHh-ccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHH
Confidence 455667777 7999999999999999999999999999999 22222332 1 445667889999997665
No 200
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.87 E-value=0.005 Score=60.32 Aligned_cols=44 Identities=20% Similarity=0.104 Sum_probs=33.2
Q ss_pred HHHHHhcCCCCCChhHHHHHHHH---hc-CCCeEEEcCCCCCchHHHH
Q psy4493 13 SVLKSKFNLTDFRPNQLAAINIA---LL-KKDAIIIMPTDYPWSDRVR 56 (323)
Q Consensus 13 ~~l~~~~~~~~~~~~Q~~~~~~~---~~-~~~~~~~~~tg~gkt~~~~ 56 (323)
..+...+....+|+.|...+..+ +. ++.+++.+|||.|||-..+
T Consensus 5 ~~~~~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL 52 (654)
T COG1199 5 GYLAVAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYL 52 (654)
T ss_pred hhHHhhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHH
Confidence 44566778889999999977544 33 4459999999999996544
No 201
>KOG0388|consensus
Probab=96.81 E-value=0.0076 Score=57.23 Aligned_cols=141 Identities=15% Similarity=0.177 Sum_probs=84.6
Q ss_pred ChhHHHHHHHH----hcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCc----EEEEccchh---
Q psy4493 25 RPNQLAAINIA----LLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD----AIIIMPTGK--- 93 (323)
Q Consensus 25 ~~~Q~~~~~~~----~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~----~lv~~pTgs--- 93 (323)
...|.+.++.. -+|-+.++..-.|.|||.+.++.|.. +.+..+ .+|++|..+
T Consensus 569 KEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAh-----------------LaE~~nIwGPFLVVtpaStL~N 631 (1185)
T KOG0388|consen 569 KEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAH-----------------LAETHNIWGPFLVVTPASTLHN 631 (1185)
T ss_pred HHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHH-----------------HHHhccCCCceEEeehHHHHhH
Confidence 34566655543 25778889999999999665555433 223333 688888777
Q ss_pred ---hhhhc----Cee--------------------eeccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEecc
Q psy4493 94 ---LLKKK----KIC--------------------LMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEV 146 (323)
Q Consensus 94 ---~l~~~----~i~--------------------l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEa 146 (323)
.+... .+- +......++|+|+|-+.+...+.+... -++.++|+|||
T Consensus 632 WaqEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qk-------vKWQYMILDEA 704 (1185)
T KOG0388|consen 632 WAQEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQK-------VKWQYMILDEA 704 (1185)
T ss_pred HHHHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHh-------hhhhheehhHH
Confidence 11111 110 144677889999999888754333222 26789999999
Q ss_pred ccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCC
Q psy4493 147 HCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQI 196 (323)
Q Consensus 147 h~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~ 196 (323)
..+-... ..-+.. +... .-...+++|+|+-.....++=..|++
T Consensus 705 QAIKSSs---S~RWKt---LLsF-~cRNRLLLTGTPIQNsMqELWALLHF 747 (1185)
T KOG0388|consen 705 QAIKSSS---SSRWKT---LLSF-KCRNRLLLTGTPIQNSMQELWALLHF 747 (1185)
T ss_pred HHhhhhh---hhHHHH---Hhhh-hccceeeecCCccchHHHHHHHHHHH
Confidence 9885422 111222 2222 23457899999887655554444443
No 202
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.77 E-value=0.0012 Score=52.79 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=39.1
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCC--eEEeecCC-CCCCc---------------ce--eeecccccCC--ccEEEE
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGL--RVSAYHAK-LESNV---------------SI--AFGLGIDKPN--VRFVIH 295 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~--~v~~~h~~-~~~~~---------------T~--~~~~Gid~~~--v~~Vi~ 295 (323)
.++.+|||++|-+..+.+.+.+...+. ....+..+ -+..+ +. .+++|+|+|+ ++.||.
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii 87 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQGSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVII 87 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEESTCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeecCcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheeee
Confidence 558999999999999999999886531 11222221 11111 44 7899999996 889999
Q ss_pred ccCCC
Q psy4493 296 HCLSK 300 (323)
Q Consensus 296 ~~~p~ 300 (323)
.++|.
T Consensus 88 ~glPf 92 (167)
T PF13307_consen 88 VGLPF 92 (167)
T ss_dssp ES---
T ss_pred cCCCC
Confidence 99884
No 203
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.77 E-value=0.0082 Score=51.40 Aligned_cols=110 Identities=12% Similarity=0.007 Sum_probs=59.7
Q ss_pred CCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--------
Q psy4493 22 TDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------- 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------- 93 (323)
..+++.|.-+.=....| -++.+.||-|||-.+ ++.. +-..+.|+.|=|+.....
T Consensus 76 ~~p~~vQll~~l~L~~G--~laEm~TGEGKTli~--~l~a--------------~~~AL~G~~V~vvT~NdyLA~RD~~~ 137 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKG--RLAEMKTGEGKTLIA--ALPA--------------ALNALQGKGVHVVTSNDYLAKRDAEE 137 (266)
T ss_dssp ----HHHHHHHHHHHTT--SEEEESTTSHHHHHH--HHHH--------------HHHHTTSS-EEEEESSHHHHHHHHHH
T ss_pred CcccHHHHhhhhhcccc--eeEEecCCCCcHHHH--HHHH--------------HHHHHhcCCcEEEeccHHHhhccHHH
Confidence 34466777655444334 488999999999432 2221 223457887766544443
Q ss_pred ---hhhhcCeee---ecc--------CCCeeEEEEcccccccchhHHHHHHH---HHhhCCcceEEEecccccc
Q psy4493 94 ---LLKKKKICL---MTE--------SSSLKLLYVSPEKLAKSKSFMTKLQK---MYKAGCLARIAIDEVHCCS 150 (323)
Q Consensus 94 ---~l~~~~i~l---~~~--------~~~~~vii~Tp~~l~~~~~~~~~l~~---~~~~~~v~~vVvDEah~~~ 150 (323)
....+|+.. ... .-.++|+++|...+.. ..+++.+.. .......+++||||+|.++
T Consensus 138 ~~~~y~~LGlsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~f-D~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 138 MRPFYEFLGLSVGIITSDMSSEERREAYAADIVYGTNSEFGF-DYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHHHTT--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHH-HHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHHHhhhccccCccccCHHHHHHHHhCcccccccchhhH-HHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 444556662 111 1146899999988852 112222221 1124578899999999776
No 204
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=96.75 E-value=0.0016 Score=63.07 Aligned_cols=40 Identities=35% Similarity=0.679 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 54 ~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
.....|++.||++.|+|+|.+++++++.|+++++++|||+
T Consensus 12 ~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGs 51 (607)
T PRK11057 12 LAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGG 51 (607)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 3456788889999999999999999999999999999999
No 205
>KOG1805|consensus
Probab=96.75 E-value=0.0055 Score=60.02 Aligned_cols=105 Identities=16% Similarity=0.074 Sum_probs=72.5
Q ss_pred CCCChhHHHHHHHHhcCCC-eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------
Q psy4493 22 TDFRPNQLAAINIALLKKD-AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK------- 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~-~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs------- 93 (323)
..+...|++|+..++..+| .++..-+|.|||.-+..+++.+ +..|+.|++.+=|-+
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL----------------~~~gkkVLLtsyThsAVDNILi 731 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKIL----------------VALGKKVLLTSYTHSAVDNILI 731 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHH----------------HHcCCeEEEEehhhHHHHHHHH
Confidence 3566789999988887666 6677799999998887777652 347888999999988
Q ss_pred hhhhcCeee------------------------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEE
Q psy4493 94 LLKKKKICL------------------------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAI 143 (323)
Q Consensus 94 ~l~~~~i~l------------------------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVv 143 (323)
.|+..++.+ ....+...|+.+|---+. .+. +...++|+.||
T Consensus 732 KL~~~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~-~pl--------f~~R~FD~cIi 802 (1100)
T KOG1805|consen 732 KLKGFGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN-HPL--------FVNRQFDYCII 802 (1100)
T ss_pred HHhccCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC-chh--------hhccccCEEEE
Confidence 444444441 122345667777754443 222 23347999999
Q ss_pred eccccccc
Q psy4493 144 DEVHCCSS 151 (323)
Q Consensus 144 DEah~~~~ 151 (323)
|||-.+..
T Consensus 803 DEASQI~l 810 (1100)
T KOG1805|consen 803 DEASQILL 810 (1100)
T ss_pred cccccccc
Confidence 99997753
No 206
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.72 E-value=0.0073 Score=59.71 Aligned_cols=102 Identities=13% Similarity=-0.016 Sum_probs=60.8
Q ss_pred CCCChhHHHHHHHHhcC-CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchhhhhhcCe
Q psy4493 22 TDFRPNQLAAINIALLK-KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKI 100 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~-~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs~l~~~~i 100 (323)
..+.+.|+.++..++.+ +-.++..+.|.|||..+...+.. +. ..|..+++++|||-....+.-
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~--------------~~--~~g~~V~~~ApTg~Aa~~L~~ 414 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREA--------------WE--AAGYRVIGAALSGKAAEGLQA 414 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHH--------------HH--hCCCeEEEEeCcHHHHHHHHh
Confidence 56889999999988874 44667779999999654443321 11 147889999999984443321
Q ss_pred eeeccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccc
Q psy4493 101 CLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 101 ~l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~ 151 (323)
. .+ +--.|..+++. ............+++|||||-++..
T Consensus 415 ~----~g---~~a~Ti~~~~~-----~~~~~~~~~~~~~llIvDEasMv~~ 453 (744)
T TIGR02768 415 E----SG---IESRTLASLEY-----AWANGRDLLSDKDVLVIDEAGMVGS 453 (744)
T ss_pred c----cC---CceeeHHHHHh-----hhccCcccCCCCcEEEEECcccCCH
Confidence 1 00 00112222211 0001111224678999999998865
No 207
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.70 E-value=0.0084 Score=60.50 Aligned_cols=102 Identities=11% Similarity=-0.036 Sum_probs=60.5
Q ss_pred CCCChhHHHHHHHHhcCCC-eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchhhhhhcCe
Q psy4493 22 TDFRPNQLAAINIALLKKD-AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKI 100 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~-~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs~l~~~~i 100 (323)
..+.+.|.++++.++.+++ .++..+.|.|||..+..+... +. ..|..+++++|||.....+.-
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~--------------~e--~~G~~V~~~ApTGkAA~~L~e 408 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREA--------------WE--AAGYEVRGAALSGIAAENLEG 408 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHH--------------HH--HcCCeEEEecCcHHHHHHHhh
Confidence 4589999999999988665 556779999999654322211 11 147789999999994444321
Q ss_pred eeeccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccc
Q psy4493 101 CLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 101 ~l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~ 151 (323)
. . .+--.|..+++. .| -........-+++|||||-++..
T Consensus 409 ~----t---Gi~a~TI~sll~--~~---~~~~~~l~~~~vlIVDEASMv~~ 447 (988)
T PRK13889 409 G----S---GIASRTIASLEH--GW---GQGRDLLTSRDVLVIDEAGMVGT 447 (988)
T ss_pred c----c---CcchhhHHHHHh--hh---cccccccccCcEEEEECcccCCH
Confidence 1 0 011112222221 00 00111233567999999998865
No 208
>KOG0391|consensus
Probab=96.63 E-value=0.0052 Score=61.30 Aligned_cols=94 Identities=13% Similarity=0.053 Sum_probs=76.2
Q ss_pred ecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc-------------------
Q psy4493 217 IKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------- 277 (323)
Q Consensus 217 ~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------- 277 (323)
...+.+-..+..|+.-|+. .++++|||+.=.+.-+-+...|+-+|+.-.-+.|...-++
T Consensus 1256 qyDcGKLQtLAiLLqQLk~--eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfIL 1333 (1958)
T KOG0391|consen 1256 QYDCGKLQTLAILLQQLKS--EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFIL 1333 (1958)
T ss_pred ecccchHHHHHHHHHHHHh--cCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEE
Confidence 3444556666667777765 8899999999999888888999888988888888877776
Q ss_pred -ceeeecccccCCccEEEEccCCCCHh------HHHHHhccC
Q psy4493 278 -SIAFGLGIDKPNVRFVIHHCLSKSME------NFYQVSIAF 312 (323)
Q Consensus 278 -T~~~~~Gid~~~v~~Vi~~~~p~~~~------~~~qr~GR~ 312 (323)
|...+.|||+-..+.||+||--+++. +.-||+|++
T Consensus 1334 STrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt 1375 (1958)
T KOG0391|consen 1334 STRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT 1375 (1958)
T ss_pred eccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc
Confidence 88899999999999999999888764 566677765
No 209
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=96.61 E-value=0.0099 Score=59.57 Aligned_cols=159 Identities=16% Similarity=0.268 Sum_probs=93.2
Q ss_pred CCCCCCCcchHHHHHHHhcCCcEEEEccchh---hhhhcCeeeeccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcc
Q psy4493 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGK---LLKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLA 139 (323)
Q Consensus 63 ~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs---~l~~~~i~l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~ 139 (323)
++|+ |-++|++|+.++.++.+++|+||||+ .+....+.+. ...+.+++++||-+.+.++.+++++.... ++
T Consensus 116 ~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~a-l~~~qrviYTsPIKALsNQKyrdl~~~fg---dv- 189 (1041)
T COG4581 116 YPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALA-LRDGQRVIYTSPIKALSNQKYRDLLAKFG---DV- 189 (1041)
T ss_pred CCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHH-HHcCCceEeccchhhhhhhHHHHHHHHhh---hh-
Confidence 5664 55899999999999999999999999 3334433321 12233599999999998888888877642 11
Q ss_pred eEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCcee----EE
Q psy4493 140 RIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFY----EV 215 (323)
Q Consensus 140 ~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~----~~ 215 (323)
++++ |- ...++ ...++.+++.||. ++ .+.+.+.+ +.....+.. ++
T Consensus 190 ------~~~v---GL-~TGDv-------~IN~~A~clvMTT----EI----LRnMlyrg------~~~~~~i~~ViFDEv 238 (1041)
T COG4581 190 ------ADMV---GL-MTGDV-------SINPDAPCLVMTT----EI----LRNMLYRG------SESLRDIEWVVFDEV 238 (1041)
T ss_pred ------hhhc---cc-eecce-------eeCCCCceEEeeH----HH----HHHHhccC------cccccccceEEEEee
Confidence 3322 20 00010 2235778888876 32 33333332 222222221 22
Q ss_pred EecCCchhHHHHHHHHHHHhhcCCC-cEEEEeCChhHHHHHHHHHHh
Q psy4493 216 RIKPAAQKDCLDELADLMSRRFRNQ-SGIIYTTSIKECEDLREELRN 261 (323)
Q Consensus 216 ~~~~~~~~~~~~~l~~~l~~~~~~~-~~iVF~~s~~~~~~l~~~L~~ 261 (323)
+...+... ..+++.+-.+.+.+ +.+-+..|+..+++++++++.
T Consensus 239 Hyi~D~eR---G~VWEE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~ 282 (1041)
T COG4581 239 HYIGDRER---GVVWEEVIILLPDHVRFVFLSATVPNAEEFAEWIQR 282 (1041)
T ss_pred eecccccc---chhHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHh
Confidence 22222211 12222222233444 777778999999999999985
No 210
>PRK01172 ski2-like helicase; Provisional
Probab=96.60 E-value=0.05 Score=53.54 Aligned_cols=71 Identities=20% Similarity=0.242 Sum_probs=50.1
Q ss_pred CCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--hhhhcCee-eeccCCCeeEEEEccccccc
Q psy4493 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--LLKKKKIC-LMTESSSLKLLYVSPEKLAK 121 (323)
Q Consensus 48 g~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l~~~~i~-l~~~~~~~~vii~Tp~~l~~ 121 (323)
.+|.+..+...+.+ .+++ ++++|.++++.+.+++++++++|||+ .+.. ... +.......+++|.+|-+.+.
T Consensus 5 ~~~l~~~~~~~~~~-~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a-~lail~~l~~~~k~v~i~P~raLa 78 (674)
T PRK01172 5 DLGYDDEFLNLFTG-NDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIA-YSAIYETFLAGLKSIYIVPLRSLA 78 (674)
T ss_pred hcCCCHHHHHHHhh-CCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHH-HHHHHHHHHhCCcEEEEechHHHH
Confidence 45677778888876 5776 99999999999999999999999999 1110 001 00011234688888988774
No 211
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.56 E-value=0.0078 Score=60.91 Aligned_cols=96 Identities=15% Similarity=0.031 Sum_probs=81.9
Q ss_pred HHHHHHHHHH-H-hhcCCC--cEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc--------------------ce
Q psy4493 224 DCLDELADLM-S-RRFRNQ--SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------------SI 279 (323)
Q Consensus 224 ~~~~~l~~~l-~-~~~~~~--~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~--------------------T~ 279 (323)
.+...+.+++ . ....+. +++||++-......+...+...++....++|+++..+ +.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4566666666 2 223555 9999999999999999999999988999999987555 77
Q ss_pred eeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCC
Q psy4493 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSF 319 (323)
Q Consensus 280 ~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g 319 (323)
+.+.|+|.-..+.||++|..+++....|...|+-|.|+..
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~ 811 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKR 811 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999998764
No 212
>KOG0346|consensus
Probab=96.50 E-value=0.0018 Score=57.93 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=62.1
Q ss_pred EcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCeee----------eccCCCeeEE
Q psy4493 44 IMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKICL----------MTESSSLKLL 112 (323)
Q Consensus 44 ~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~l----------~~~~~~~~vi 112 (323)
.....+|+...+.+++.+ .||+.|+-+|..|||-+++|||+++-|.||| .....-+++ ......+.-+
T Consensus 19 ktFe~~gLD~RllkAi~~-lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~ 97 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITK-LGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAV 97 (569)
T ss_pred ccHHHhCCCHHHHHHHHH-hCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeE
Confidence 346789999999999999 8999999999999999999999999999999 222222220 1122334445
Q ss_pred EEcccccccchhHHHHHHHH
Q psy4493 113 YVSPEKLAKSKSFMTKLQKM 132 (323)
Q Consensus 113 i~Tp~~l~~~~~~~~~l~~~ 132 (323)
|..|.+-+ ..+.+..+...
T Consensus 98 iLvPTkEL-~qQvy~viekL 116 (569)
T KOG0346|consen 98 ILVPTKEL-AQQVYKVIEKL 116 (569)
T ss_pred EEechHHH-HHHHHHHHHHH
Confidence 55566555 34555566553
No 213
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.41 E-value=0.019 Score=56.95 Aligned_cols=85 Identities=6% Similarity=-0.016 Sum_probs=59.7
Q ss_pred CCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHH-HHhhCCCCCEEEEeecCChh
Q psy4493 107 SSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSI-LKTMFPDVPILGLTATATTK 185 (323)
Q Consensus 107 ~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~-l~~~~~~~~~i~lSAT~~~~ 185 (323)
....|+++||..+.. +++........|..+||||||++... +.. ..+.. .+...+..-+.+|||.+...
T Consensus 6 ~~ggi~~~T~rIl~~-----DlL~~ri~~~~itgiiv~~Ahr~~~~---~~e--aFI~rlyr~~n~~gfIkafSdsP~~~ 75 (814)
T TIGR00596 6 LEGGIFSITSRILVV-----DLLTGIIPPELITGILVLRADRIIES---SQE--AFILRLYRQKNKTGFIKAFSDNPEAF 75 (814)
T ss_pred hcCCEEEEechhhHh-----HHhcCCCCHHHccEEEEeeccccccc---ccH--HHHHHHHHHhCCCcceEEecCCCccc
Confidence 455799999999873 46666667779999999999999652 222 22333 33333456689999998863
Q ss_pred -----HHHHHHHHhCCCCcEE
Q psy4493 186 -----VMLDVQKMLQIEDCVV 201 (323)
Q Consensus 186 -----~~~~i~~~l~~~~~~~ 201 (323)
....+++.|++.+..+
T Consensus 76 ~~g~~~l~~vmk~L~i~~v~l 96 (814)
T TIGR00596 76 TMGFSPLETKMRNLFLRHVYL 96 (814)
T ss_pred ccchHHHHHHHHHhCcCeEEE
Confidence 3577888888876443
No 214
>KOG0342|consensus
Probab=96.39 E-value=0.0071 Score=54.93 Aligned_cols=77 Identities=17% Similarity=0.145 Sum_probs=59.8
Q ss_pred CCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee-------e-eccCCCeeEEEEcc
Q psy4493 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC-------L-MTESSSLKLLYVSP 116 (323)
Q Consensus 46 ~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~-------l-~~~~~~~~vii~Tp 116 (323)
..+.-.+....+++++ +||..++++|+.+|+.+++|+|+++.|.||+ ..-+..++ + ........++|++|
T Consensus 84 f~~~~LS~~t~kAi~~-~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~P 162 (543)
T KOG0342|consen 84 FEEGSLSPLTLKAIKE-MGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICP 162 (543)
T ss_pred hhccccCHHHHHHHHh-cCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecc
Confidence 4466778888899998 9999999999999999999999999999999 11111122 0 22346778999999
Q ss_pred cccccch
Q psy4493 117 EKLAKSK 123 (323)
Q Consensus 117 ~~l~~~~ 123 (323)
-+-+..+
T Consensus 163 TRELA~Q 169 (543)
T KOG0342|consen 163 TRELAMQ 169 (543)
T ss_pred cHHHHHH
Confidence 9988543
No 215
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.35 E-value=0.017 Score=43.69 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=16.6
Q ss_pred CCCeEEEcCCCCCchHHHHHHHHh
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
++.+++..|+|+|||..+...+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHH
Confidence 456788999999999877776655
No 216
>PRK04296 thymidine kinase; Provisional
Probab=96.30 E-value=0.021 Score=46.59 Aligned_cols=34 Identities=9% Similarity=-0.019 Sum_probs=23.5
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEcc
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMP 90 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~p 90 (323)
.++..|.|.|||..+...+.+. ...++.++++-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~----------------~~~g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNY----------------EERGMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHH----------------HHcCCeEEEEec
Confidence 3556688999998877666541 235777877755
No 217
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.26 E-value=0.0061 Score=48.72 Aligned_cols=102 Identities=14% Similarity=0.135 Sum_probs=50.4
Q ss_pred EEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC-CcEEEEccchh-----------hhhhcCeee-------
Q psy4493 42 IIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK-KDAIIIMPTGK-----------LLKKKKICL------- 102 (323)
Q Consensus 42 ~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~~pTgs-----------~l~~~~i~l------- 102 (323)
++.++-|-|||..+-.++.... + .+ .+++|.||... .+...+.+-
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~--------~--------~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~ 64 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALI--------Q--------KGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIG 64 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSS--------S-------------EEEE-SS--S-HHHHHCC------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHH--------H--------hcCceEEEecCCHHHHHHHHHHHHhhccccccccccccccc
Confidence 4678999999988776665521 1 22 47999999988 222222110
Q ss_pred ---eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEe
Q psy4493 103 ---MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179 (323)
Q Consensus 103 ---~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lS 179 (323)
........|-+..|+.+... ....+++|||||=.+.- -. +.......+.+.||
T Consensus 65 ~~~~~~~~~~~i~f~~Pd~l~~~------------~~~~DlliVDEAAaIp~---------p~---L~~ll~~~~~vv~s 120 (177)
T PF05127_consen 65 QIIKLRFNKQRIEFVAPDELLAE------------KPQADLLIVDEAAAIPL---------PL---LKQLLRRFPRVVFS 120 (177)
T ss_dssp --------CCC--B--HHHHCCT----------------SCEEECTGGGS-H---------HH---HHHHHCCSSEEEEE
T ss_pred cccccccccceEEEECCHHHHhC------------cCCCCEEEEechhcCCH---------HH---HHHHHhhCCEEEEE
Confidence 11123556777777777641 11458999999997642 22 33334566788899
Q ss_pred ecCC
Q psy4493 180 ATAT 183 (323)
Q Consensus 180 AT~~ 183 (323)
.|..
T Consensus 121 tTi~ 124 (177)
T PF05127_consen 121 TTIH 124 (177)
T ss_dssp EEBS
T ss_pred eecc
Confidence 9976
No 218
>KOG0388|consensus
Probab=96.18 E-value=0.0095 Score=56.59 Aligned_cols=92 Identities=18% Similarity=0.080 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc-------------------ceeeeccc
Q psy4493 225 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------------------SIAFGLGI 285 (323)
Q Consensus 225 ~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~-------------------T~~~~~Gi 285 (323)
+++.|+.-++ ..+.++|+|..-.+....+.++|.-+++...-+.|...-.+ |.+.+.||
T Consensus 1032 ~LDeLL~kLk--aegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGI 1109 (1185)
T KOG0388|consen 1032 VLDELLPKLK--AEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGI 1109 (1185)
T ss_pred eHHHHHHHhh--cCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccc
Confidence 3444444443 37899999999999999999999999998888888766555 99999999
Q ss_pred ccCCccEEEEccCCCCHhHHHHHhccCCCCCCC
Q psy4493 286 DKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHS 318 (323)
Q Consensus 286 d~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~ 318 (323)
|+-..+.||.||..+++..=.|-..||-|-|+.
T Consensus 1110 NLTAADTViFYdSDWNPT~D~QAMDRAHRLGQT 1142 (1185)
T KOG0388|consen 1110 NLTAADTVIFYDSDWNPTADQQAMDRAHRLGQT 1142 (1185)
T ss_pred cccccceEEEecCCCCcchhhHHHHHHHhccCc
Confidence 999999999999999999889999999998875
No 219
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.12 E-value=0.034 Score=49.10 Aligned_cols=143 Identities=11% Similarity=0.055 Sum_probs=72.6
Q ss_pred CCCCCCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHh
Q psy4493 1 MLPNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIAL 80 (323)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~ 80 (323)
|+.-|||=....+.|++.+.... -....++..|.|.||........+..+ ..
T Consensus 1 ~~~~yPWl~~~~~~l~~~~~~~r-------------l~hA~L~~G~~G~Gk~~lA~~~a~~ll-C~-------------- 52 (319)
T PRK06090 1 MNNDYPWLVPVWQNWKAGLDAGR-------------IPGALLLQSDEGLGVESLVELFSRALL-CQ-------------- 52 (319)
T ss_pred CCcCcccHHHHHHHHHHHHHcCC-------------cceeEeeECCCCCCHHHHHHHHHHHHc-CC--------------
Confidence 88899998776666655432222 133467788999999855444333311 11
Q ss_pred cCCcEEEEccchh--hhhhcCeeeeccCCCeeEEEEcccc---cccchhHHHHHHH---HHhhCCcceEEEecccccccc
Q psy4493 81 LKKDAIIIMPTGK--LLKKKKICLMTESSSLKLLYVSPEK---LAKSKSFMTKLQK---MYKAGCLARIAIDEVHCCSSW 152 (323)
Q Consensus 81 ~~~~~lv~~pTgs--~l~~~~i~l~~~~~~~~vii~Tp~~---l~~~~~~~~~l~~---~~~~~~v~~vVvDEah~~~~~ 152 (323)
+.. -.|.|. .... ......+|+.+..|+. -..-...+...+. ....+..+++|||+||.|...
T Consensus 53 -~~~---~~~Cg~C~sC~~-----~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~ 123 (319)
T PRK06090 53 -NYQ---SEACGFCHSCEL-----MQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNES 123 (319)
T ss_pred -CCC---CCCCCCCHHHHH-----HHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHH
Confidence 110 013333 1111 1123455666666642 1111222322222 123356789999999998642
Q ss_pred CCCchHHHHhHHHHHhhCCCCCEEEEeecCChhH
Q psy4493 153 GHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186 (323)
Q Consensus 153 ~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 186 (323)
..+.|-+..+..|...+++|.++-+..+
T Consensus 124 ------AaNaLLKtLEEPp~~t~fiL~t~~~~~l 151 (319)
T PRK06090 124 ------ASNALLKTLEEPAPNCLFLLVTHNQKRL 151 (319)
T ss_pred ------HHHHHHHHhcCCCCCeEEEEEECChhhC
Confidence 2233434444555444555555544443
No 220
>KOG0343|consensus
Probab=96.06 E-value=0.24 Score=46.18 Aligned_cols=84 Identities=23% Similarity=0.204 Sum_probs=59.1
Q ss_pred CCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----e----eccCCCeeEEEEcc
Q psy4493 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----L----MTESSSLKLLYVSP 116 (323)
Q Consensus 46 ~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l----~~~~~~~~vii~Tp 116 (323)
...+..|....+.|++ -+|..++++|.++||..++|++++-.|.||+ ...+.-|+ | .......-.+|.||
T Consensus 71 F~dlpls~~t~kgLke-~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISP 149 (758)
T KOG0343|consen 71 FADLPLSQKTLKGLKE-AKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISP 149 (758)
T ss_pred HHhCCCchHHHHhHhh-cCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecc
Confidence 4466677777777877 6899999999999999999999999999999 11122222 1 22334456778899
Q ss_pred cccccchhHHHHHHH
Q psy4493 117 EKLAKSKSFMTKLQK 131 (323)
Q Consensus 117 ~~l~~~~~~~~~l~~ 131 (323)
-+-+.. +..+.++.
T Consensus 150 TRELA~-QtFevL~k 163 (758)
T KOG0343|consen 150 TRELAL-QTFEVLNK 163 (758)
T ss_pred hHHHHH-HHHHHHHH
Confidence 887743 33344444
No 221
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.06 E-value=0.029 Score=52.01 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=16.2
Q ss_pred eEEEcCCCCCchHHHHHHHHh
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~ 61 (323)
.++..|.|.|||..+....+.
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 578889999999766555554
No 222
>PRK13767 ATP-dependent helicase; Provisional
Probab=96.00 E-value=0.015 Score=58.74 Aligned_cols=68 Identities=28% Similarity=0.316 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----e------eccCCCeeEEEEccccccc
Q psy4493 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----L------MTESSSLKLLYVSPEKLAK 121 (323)
Q Consensus 53 ~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l------~~~~~~~~vii~Tp~~l~~ 121 (323)
..+..++++ ++..|+|+|.+|++.+++|+|++++||||+ .....-+. + ........++|.+|-+.+.
T Consensus 20 ~~v~~~~~~--~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa 97 (876)
T PRK13767 20 PYVREWFKE--KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALN 97 (876)
T ss_pred HHHHHHHHH--ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHH
Confidence 455566655 577899999999999999999999999999 10000011 0 0113356799999988875
Q ss_pred c
Q psy4493 122 S 122 (323)
Q Consensus 122 ~ 122 (323)
.
T Consensus 98 ~ 98 (876)
T PRK13767 98 N 98 (876)
T ss_pred H
Confidence 3
No 223
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.96 E-value=0.026 Score=57.57 Aligned_cols=59 Identities=10% Similarity=-0.013 Sum_probs=42.7
Q ss_pred CCCChhHHHHHHHHhcC-CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchhhhh
Q psy4493 22 TDFRPNQLAAINIALLK-KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLK 96 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~-~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs~l~ 96 (323)
..+.+.|.++++.+..+ +-.++..+.|.|||..+...... +. ..|..++.++|||....
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~--------------~e--~~G~~V~g~ApTgkAA~ 439 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREA--------------WE--AAGYRVVGGALAGKAAE 439 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHH--------------HH--HcCCeEEEEcCcHHHHH
Confidence 56899999999987653 44666779999999665544322 11 25788999999999433
No 224
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.95 E-value=0.099 Score=46.51 Aligned_cols=118 Identities=9% Similarity=-0.031 Sum_probs=58.9
Q ss_pred CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--hhhhcCeeeeccCCCeeEEEEccc
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--LLKKKKICLMTESSSLKLLYVSPE 117 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l~~~~i~l~~~~~~~~vii~Tp~ 117 (323)
..++..|.|.||+.......+. +.+..+ . -..|+|. ..+.. .....+|+.+..|+
T Consensus 24 a~Lf~G~~G~GK~~~A~~~A~~-llC~~~---------------~--~~~~Cg~C~sC~~~-----~~g~HPD~~~i~~~ 80 (328)
T PRK05707 24 AYLLHGPAGIGKRALAERLAAA-LLCEAP---------------Q--GGGACGSCKGCQLL-----RAGSHPDNFVLEPE 80 (328)
T ss_pred eeeeECCCCCCHHHHHHHHHHH-HcCCCC---------------C--CCCCCCCCHHHHHH-----hcCCCCCEEEEecc
Confidence 4667889999998655444433 222111 0 0124443 11111 12345677777775
Q ss_pred cc---ccchhHHHHHHHH---HhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhH
Q psy4493 118 KL---AKSKSFMTKLQKM---YKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186 (323)
Q Consensus 118 ~l---~~~~~~~~~l~~~---~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 186 (323)
.- ..-...++..+.. ...+..+++||||||.|... ..+.+-...+..|..-+++|+++-+..+
T Consensus 81 ~~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~------aaNaLLK~LEEPp~~~~fiL~t~~~~~l 149 (328)
T PRK05707 81 EADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRN------AANALLKSLEEPSGDTVLLLISHQPSRL 149 (328)
T ss_pred CCCCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHH------HHHHHHHHHhCCCCCeEEEEEECChhhC
Confidence 21 1123444443332 23356788999999998652 2233433444444434444555544333
No 225
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=95.89 E-value=0.0092 Score=56.41 Aligned_cols=39 Identities=41% Similarity=0.699 Sum_probs=36.4
Q ss_pred HHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 55 ~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
+...|+..||+..|++.|.++|.+++.++++++++|||+
T Consensus 5 ~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGg 43 (590)
T COG0514 5 AQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGG 43 (590)
T ss_pred HHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCC
Confidence 346688899999999999999999999999999999999
No 226
>KOG0339|consensus
Probab=95.85 E-value=0.19 Score=46.39 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=42.6
Q ss_pred EcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 44 IMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 44 ~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
....-+|-+.++..++.. --+.+|+|+|.+++|..+.|++++-+|-||+
T Consensus 223 tsfeh~gfDkqLm~airk-~Ey~kptpiq~qalptalsgrdvigIAktgS 271 (731)
T KOG0339|consen 223 TSFEHFGFDKQLMTAIRK-SEYEKPTPIQCQALPTALSGRDVIGIAKTGS 271 (731)
T ss_pred chhhhcCchHHHHHHHhh-hhcccCCcccccccccccccccchheeeccC
Confidence 344566777788888877 6789999999999999999999999999999
No 227
>KOG0353|consensus
Probab=95.84 E-value=0.0076 Score=53.00 Aligned_cols=50 Identities=48% Similarity=0.878 Sum_probs=46.8
Q ss_pred EcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 44 IMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 44 ~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
.-..|+.++......|++.|.++.++|.|.++|.+.+.++++++++|||.
T Consensus 71 wdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgg 120 (695)
T KOG0353|consen 71 WDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGG 120 (695)
T ss_pred cccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCC
Confidence 34568999999999999999999999999999999999999999999998
No 228
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.80 E-value=0.019 Score=48.02 Aligned_cols=62 Identities=19% Similarity=0.196 Sum_probs=42.4
Q ss_pred CChhHHHHHHHHhcCCC-eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 24 FRPNQLAAINIALLKKD-AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 24 ~~~~Q~~~~~~~~~~~~-~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
+.+.|..++..++.... .++..|.|.|||..+...+.... +.........++.+++++||..
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~--------~~~~~~~~~~~~~il~~~~sN~ 64 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLL--------QRFKSRSADRGKKILVVSPSNA 64 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH---------------HCCCSS-EEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhc--------cchhhhhhhccccceeecCCch
Confidence 56789999999998887 88888999999988777776520 0000011345678999999999
No 229
>KOG0326|consensus
Probab=95.74 E-value=0.029 Score=48.44 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=36.6
Q ss_pred CCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 49 ~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
+++-..+..-+.+ .||+.|+|+|.++||..+.|+|+++-|.-|+
T Consensus 90 ~~Lkr~LLmgIfe-~G~ekPSPiQeesIPiaLtGrdiLaRaKNGT 133 (459)
T KOG0326|consen 90 YCLKRELLMGIFE-KGFEKPSPIQEESIPIALTGRDILARAKNGT 133 (459)
T ss_pred hhhhHHHHHHHHH-hccCCCCCccccccceeecchhhhhhccCCC
Confidence 4444555555555 6999999999999999999999999999888
No 230
>KOG2340|consensus
Probab=95.71 E-value=0.027 Score=51.86 Aligned_cols=78 Identities=10% Similarity=0.040 Sum_probs=52.2
Q ss_pred CCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------c--eeeecccccCCccEEEEccC
Q psy4493 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------S--IAFGLGIDKPNVRFVIHHCL 298 (323)
Q Consensus 239 ~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T--~~~~~Gid~~~v~~Vi~~~~ 298 (323)
-..+|||.+|=-.-..+-.++++.++....+|...+... | --+=+-.++..|..||.|.+
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqp 631 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQP 631 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecC
Confidence 356799999977777777777776554444443333333 1 12234456778999999999
Q ss_pred CCCH---hHHHHHhccCCCCC
Q psy4493 299 SKSM---ENFYQVSIAFGLGK 316 (323)
Q Consensus 299 p~~~---~~~~qr~GR~gR~g 316 (323)
|..+ .+++.+.+|+.-.|
T Consensus 632 P~~P~FYsEiinm~~k~~~~g 652 (698)
T KOG2340|consen 632 PNNPHFYSEIINMSDKTTSQG 652 (698)
T ss_pred CCCcHHHHHHHhhhhhhhccC
Confidence 9876 46688888876555
No 231
>PRK00254 ski2-like helicase; Provisional
Probab=95.67 E-value=0.014 Score=57.89 Aligned_cols=72 Identities=22% Similarity=0.308 Sum_probs=52.7
Q ss_pred CCchHHHHHHHHhcCCCCCCCcchHHHHHH-HhcCCcEEEEccchh-hhhhcCee-e-eccCCCeeEEEEccccccc
Q psy4493 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINI-ALLKKDAIIIMPTGK-LLKKKKIC-L-MTESSSLKLLYVSPEKLAK 121 (323)
Q Consensus 49 ~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~-~~~~~~~lv~~pTgs-~l~~~~i~-l-~~~~~~~~vii~Tp~~l~~ 121 (323)
.+.++.+.+.+++ .|+..|+|+|.++++. ++.|+|+++++|||+ ......+. + .......+++|..|-+.+.
T Consensus 6 l~l~~~~~~~l~~-~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa 81 (720)
T PRK00254 6 LRVDERIKRVLKE-RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALA 81 (720)
T ss_pred cCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHH
Confidence 4577888899988 8999999999999986 788999999999999 10000011 0 0011245788999988774
No 232
>PF13245 AAA_19: Part of AAA domain
Probab=95.59 E-value=0.033 Score=37.94 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=34.3
Q ss_pred HHHHHhcCCC-eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHH-HhcCCcEEEEccchhhhhh
Q psy4493 31 AINIALLKKD-AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINI-ALLKKDAIIIMPTGKLLKK 97 (323)
Q Consensus 31 ~~~~~~~~~~-~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~-~~~~~~~lv~~pTgs~l~~ 97 (323)
++...+.+.+ +++..|.|+|||..+...+...+ .. -..++++++++||+.....
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~-------------~~~~~~~~~vlv~a~t~~aa~~ 57 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELL-------------AARADPGKRVLVLAPTRAAADE 57 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHH-------------HHhcCCCCeEEEECCCHHHHHH
Confidence 3443444444 44588999999988777766521 00 0116789999999884443
No 233
>KOG1132|consensus
Probab=95.59 E-value=0.026 Score=54.95 Aligned_cols=36 Identities=25% Similarity=0.201 Sum_probs=27.4
Q ss_pred CCChhHHHHHHHHh----cCCCeEEEcCCCCCchHHHHHH
Q psy4493 23 DFRPNQLAAINIAL----LKKDAIIIMPTDYPWSDRVRSV 58 (323)
Q Consensus 23 ~~~~~Q~~~~~~~~----~~~~~~~~~~tg~gkt~~~~~~ 58 (323)
.+++.|+..+..++ .+.+.++..|||.|||-.++..
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS 60 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCS 60 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHH
Confidence 34788998777765 3556899999999999776543
No 234
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=95.57 E-value=0.046 Score=47.76 Aligned_cols=36 Identities=17% Similarity=-0.043 Sum_probs=27.9
Q ss_pred CChhHHHHHHHH----hcCCCeEEEcCCCCCchHHHHHHH
Q psy4493 24 FRPNQLAAINIA----LLKKDAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 24 ~~~~Q~~~~~~~----~~~~~~~~~~~tg~gkt~~~~~~l 59 (323)
+||.|.+.++.+ ..++++++.+|||.|||..++...
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~a 48 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLT 48 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHH
Confidence 499999955544 468889999999999997655444
No 235
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=95.57 E-value=0.046 Score=47.76 Aligned_cols=36 Identities=17% Similarity=-0.043 Sum_probs=27.9
Q ss_pred CChhHHHHHHHH----hcCCCeEEEcCCCCCchHHHHHHH
Q psy4493 24 FRPNQLAAINIA----LLKKDAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 24 ~~~~Q~~~~~~~----~~~~~~~~~~~tg~gkt~~~~~~l 59 (323)
+||.|.+.++.+ ..++++++.+|||.|||..++...
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~a 48 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLT 48 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHH
Confidence 499999955544 468889999999999997655444
No 236
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.56 E-value=0.076 Score=56.19 Aligned_cols=104 Identities=11% Similarity=0.102 Sum_probs=61.3
Q ss_pred CCCChhHHHHHHHHhcC--CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHh--cCCcEEEEccchh---h
Q psy4493 22 TDFRPNQLAAINIALLK--KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIAL--LKKDAIIIMPTGK---L 94 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~--~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~--~~~~~lv~~pTgs---~ 94 (323)
..+.+.|.+++..++.. +-.++..+.|.|||..+...+.. +..+. .+..++.++|||. .
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~--------------~~~l~e~~g~~V~glAPTgkAa~~ 899 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSA--------------VNMLPESERPRVVGLGPTHRAVGE 899 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHH--------------HHHHhhccCceEEEEechHHHHHH
Confidence 36889999999999865 44666779999999776554432 22222 3466899999999 4
Q ss_pred hhhcCeeeeccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccc
Q psy4493 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 95 l~~~~i~l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~ 151 (323)
|.+.|+. -.|..+++........... .....-+++|||||=++..
T Consensus 900 L~e~Gi~-----------A~TIasfL~~~~~~~~~~~-~~~~~~~llIVDEASMV~~ 944 (1623)
T PRK14712 900 MRSAGVD-----------AQTLASFLHDTQLQQRSGE-TPDFSNTLFLLDESSMVGN 944 (1623)
T ss_pred HHHhCch-----------HhhHHHHhccccchhhccc-CCCCCCcEEEEEccccccH
Confidence 4444443 1222333211000000000 0011347999999998865
No 237
>KOG0335|consensus
Probab=95.55 E-value=0.016 Score=53.13 Aligned_cols=92 Identities=14% Similarity=0.089 Sum_probs=61.9
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh------------hhhhcCee---eeccCCCeeEEEEccc
Q psy4493 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK------------LLKKKKIC---LMTESSSLKLLYVSPE 117 (323)
Q Consensus 53 ~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs------------~l~~~~i~---l~~~~~~~~vii~Tp~ 117 (323)
+.+...++. -++..|+|+|+.+||.+..|++.+++||||+ .+...+.. .......+..+|.+|-
T Consensus 83 ~~l~~ni~~-~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapT 161 (482)
T KOG0335|consen 83 EALAGNIKR-SGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPT 161 (482)
T ss_pred HHHhhcccc-ccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCc
Confidence 344444444 5899999999999999999999999999999 22222211 1222245889999998
Q ss_pred ccccchhHHHHHHHHHhhCCcceEEEecc
Q psy4493 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEV 146 (323)
Q Consensus 118 ~l~~~~~~~~~l~~~~~~~~v~~vVvDEa 146 (323)
+-+. .+.++..+.......++.++++--
T Consensus 162 ReL~-~Qi~nea~k~~~~s~~~~~~~ygg 189 (482)
T KOG0335|consen 162 RELV-DQIYNEARKFSYLSGMKSVVVYGG 189 (482)
T ss_pred HHHh-hHHHHHHHhhcccccceeeeeeCC
Confidence 8874 344445555555556666666544
No 238
>KOG1802|consensus
Probab=95.54 E-value=0.07 Score=50.62 Aligned_cols=59 Identities=14% Similarity=0.140 Sum_probs=42.5
Q ss_pred CCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 20 NLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 20 ~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
+..++...|..|++.++.+.--++-.|+|.|||......+... +. ..+..+||+||..-
T Consensus 407 ~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl-------------~~--~~~~~VLvcApSNi 465 (935)
T KOG1802|consen 407 NLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHL-------------AR--QHAGPVLVCAPSNI 465 (935)
T ss_pred CchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHH-------------HH--hcCCceEEEcccch
Confidence 4577778999999999987777788899999995544443220 11 13356999999887
No 239
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.50 E-value=0.57 Score=51.51 Aligned_cols=199 Identities=15% Similarity=0.057 Sum_probs=100.1
Q ss_pred CCCChhHHHHHHHHhcCC--CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh---hhh
Q psy4493 22 TDFRPNQLAAINIALLKK--DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK---LLK 96 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~--~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs---~l~ 96 (323)
..+.+.|.+++..++..+ -.++..+.|.|||..+...+.- +. ..|..+++++|||. .|.
T Consensus 428 ~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~--------------~~--~~G~~V~~lAPTgrAA~~L~ 491 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHL--------------AS--EQGYEIQIITAGSLSAQELR 491 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHH--------------HH--hcCCeEEEEeCCHHHHHHHH
Confidence 357789999999988754 3556779999999665544422 11 25788999999998 333
Q ss_pred hc-Cee---e----eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHh
Q psy4493 97 KK-KIC---L----MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168 (323)
Q Consensus 97 ~~-~i~---l----~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~ 168 (323)
+. |+. + ..... . .-..|...+ +........-+++|||||-++... .+..|..
T Consensus 492 e~~g~~A~Ti~~~l~~l~~-~-~~~~tv~~f---------l~~~~~l~~~~vlIVDEAsMl~~~---------~~~~Ll~ 551 (1960)
T TIGR02760 492 QKIPRLASTFITWVKNLFN-D-DQDHTVQGL---------LDKSSPFSNKDIFVVDEANKLSNN---------ELLKLID 551 (1960)
T ss_pred HHhcchhhhHHHHHHhhcc-c-ccchhHHHh---------hcccCCCCCCCEEEEECCCCCCHH---------HHHHHHH
Confidence 22 322 0 00000 0 000111111 111111124579999999988652 2222332
Q ss_pred -h-CCCCCEEEEeec--CCh----hHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecCCchhHHHHHHHHHHHhhc-CC
Q psy4493 169 -M-FPDVPILGLTAT--ATT----KVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF-RN 239 (323)
Q Consensus 169 -~-~~~~~~i~lSAT--~~~----~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~ 239 (323)
. ..+.++|++-=+ ++. .....+.+ -|++...+......+..+ .+.. ....+++..+.+.+.... ..
T Consensus 552 ~a~~~garvVlvGD~~QL~sV~aG~~f~~L~~-~gv~t~~l~~i~rq~~~v--~i~~--~~~~~r~~~ia~~y~~L~~~r 626 (1960)
T TIGR02760 552 KAEQHNSKLILLNDSAQRQGMSAGSAIDLLKE-GGVTTYAWVDTKQQKASV--EISE--AVDKLRVDYIASAWLDLTPDR 626 (1960)
T ss_pred HHhhcCCEEEEEcChhhcCccccchHHHHHHH-CCCcEEEeecccccCcce--eeec--cCchHHHHHHHHHHHhccccc
Confidence 2 136777766433 221 22233332 233332222211111111 1111 222344444444443222 34
Q ss_pred CcEEEEeCChhHHHHHHHHHHh
Q psy4493 240 QSGIIYTTSIKECEDLREELRN 261 (323)
Q Consensus 240 ~~~iVF~~s~~~~~~l~~~L~~ 261 (323)
.+++|+..+.++...+....+.
T Consensus 627 ~~tliv~~t~~dr~~Ln~~iR~ 648 (1960)
T TIGR02760 627 QNSQVLATTHREQQDLTQIIRN 648 (1960)
T ss_pred CceEEEcCCcHHHHHHHHHHHH
Confidence 4689999998887777766654
No 240
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.50 E-value=0.077 Score=46.88 Aligned_cols=43 Identities=12% Similarity=-0.018 Sum_probs=24.8
Q ss_pred CCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCCh
Q psy4493 136 GCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATT 184 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~ 184 (323)
+..+++||||||.|... ..+.|-+..+..|..-+++|.+.-+.
T Consensus 112 g~~kV~iI~~ae~m~~~------AaNaLLKtLEEPp~~~~fiL~~~~~~ 154 (319)
T PRK08769 112 GIAQVVIVDPADAINRA------ACNALLKTLEEPSPGRYLWLISAQPA 154 (319)
T ss_pred CCcEEEEeccHhhhCHH------HHHHHHHHhhCCCCCCeEEEEECChh
Confidence 46789999999998642 22334344455554444444444333
No 241
>KOG0344|consensus
Probab=95.49 E-value=0.018 Score=53.45 Aligned_cols=76 Identities=22% Similarity=0.338 Sum_probs=54.2
Q ss_pred CCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCeee---------eccCCCeeEEEEcccc
Q psy4493 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKICL---------MTESSSLKLLYVSPEK 118 (323)
Q Consensus 49 ~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~l---------~~~~~~~~vii~Tp~~ 118 (323)
++-...++..+.. .+|..|+++|.+|+|.++.+++++.++|||+ ...+..+++ .........+|..|.+
T Consensus 141 ~~~~~~ll~nl~~-~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptr 219 (593)
T KOG0344|consen 141 YSMNKRLLENLQE-LGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTR 219 (593)
T ss_pred hhhcHHHHHhHhh-CCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchH
Confidence 3344566666666 7999999999999999999999999999999 222222221 1224456778888888
Q ss_pred cccchhH
Q psy4493 119 LAKSKSF 125 (323)
Q Consensus 119 l~~~~~~ 125 (323)
.+..+.+
T Consensus 220 eLa~Qi~ 226 (593)
T KOG0344|consen 220 ELAAQIY 226 (593)
T ss_pred HHHHHHH
Confidence 8754333
No 242
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.46 E-value=0.12 Score=55.43 Aligned_cols=104 Identities=12% Similarity=0.097 Sum_probs=60.6
Q ss_pred CCCChhHHHHHHHHhcCCC--eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHh--cCCcEEEEccchh---h
Q psy4493 22 TDFRPNQLAAINIALLKKD--AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIAL--LKKDAIIIMPTGK---L 94 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~--~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~--~~~~~lv~~pTgs---~ 94 (323)
..+.+.|..+++.++..++ .++..+.|.|||..+...+.. +..+. ++..++.+||||. .
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~--------------~~~l~~~~~~~V~glAPTgrAAk~ 1031 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSA--------------VNTLPESERPRVVGLGPTHRAVGE 1031 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHH--------------HHHhhcccCceEEEECCcHHHHHH
Confidence 4688999999999997543 556679999999765544432 22121 3456899999998 4
Q ss_pred hhhcCeeeeccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccc
Q psy4493 95 LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 95 l~~~~i~l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~ 151 (323)
+.+.|+. -.|..+++...... ..........-+++||||+=++..
T Consensus 1032 L~e~Gi~-----------A~TI~s~L~~~~~~-~~~~~~~~~~~~llIVDEaSMv~~ 1076 (1747)
T PRK13709 1032 MRSAGVD-----------AQTLASFLHDTQLQ-QRSGETPDFSNTLFLLDESSMVGN 1076 (1747)
T ss_pred HHhcCcc-----------hhhHHHHhcccccc-cccccCCCCCCcEEEEEccccccH
Confidence 4444433 12333333100000 000000001347899999998865
No 243
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.43 E-value=0.071 Score=43.83 Aligned_cols=32 Identities=16% Similarity=-0.042 Sum_probs=22.6
Q ss_pred CCChhHHHHHHHHhcCCCeEEEcCCCCCchHH
Q psy4493 23 DFRPNQLAAINIALLKKDAIIIMPTDYPWSDR 54 (323)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~ 54 (323)
.....|..++++.+..+-+++..|.|.|||--
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~L 35 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFL 35 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHH
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHH
Confidence 34568999999999777677888999999943
No 244
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.35 E-value=0.24 Score=40.54 Aligned_cols=54 Identities=19% Similarity=0.075 Sum_probs=33.9
Q ss_pred CCcceEEEeccccccccCCCchHHHHhHHHHHhhC-CCCCEEEEeecCChhHHHHHHHH
Q psy4493 136 GCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF-PDVPILGLTATATTKVMLDVQKM 193 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~ 193 (323)
++.++|+||-+-+... ......++..+.... +....+.+|||...+..+.+..+
T Consensus 82 ~~~D~vlIDT~Gr~~~----d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPR----DEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp TTSSEEEEEE-SSSST----HHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred cCCCEEEEecCCcchh----hHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 4789999999875532 223334454444443 34567889999988776555554
No 245
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.32 E-value=0.15 Score=55.73 Aligned_cols=104 Identities=16% Similarity=0.078 Sum_probs=61.8
Q ss_pred CCCChhHHHHHHHHhcCCC--eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh---hhh
Q psy4493 22 TDFRPNQLAAINIALLKKD--AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK---LLK 96 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~--~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs---~l~ 96 (323)
..+.+.|..++..++.+.+ +++..+.|.|||..+...++.. . ++++ ..+..++.+||||. .|.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i---------~-~~~~--~~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPV---------L-QAFE--SEQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHH---------H-HHHH--hcCCeEEEEeChHHHHHHHH
Confidence 5789999999999887644 4556799999997765433220 0 1111 14678999999999 444
Q ss_pred hcCeeeeccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccc
Q psy4493 97 KKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 97 ~~~i~l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~ 151 (323)
..|+. -.|..+++..... .........-+++|||||=++..
T Consensus 1086 ~~g~~-----------a~Ti~s~l~~~~~---~~~~~~~~~~~v~ivDEasMv~~ 1126 (1960)
T TIGR02760 1086 SAGVQ-----------AQTLDSFLTDISL---YRNSGGDFRNTLFILDESSMVSN 1126 (1960)
T ss_pred hcCCc-----------hHhHHHHhcCccc---ccccCCCCcccEEEEEccccccH
Confidence 44443 1133333210000 00000122457999999998865
No 246
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.25 E-value=0.18 Score=48.65 Aligned_cols=17 Identities=41% Similarity=0.524 Sum_probs=14.3
Q ss_pred hCCcceEEEeccccccc
Q psy4493 135 AGCLARIAIDEVHCCSS 151 (323)
Q Consensus 135 ~~~v~~vVvDEah~~~~ 151 (323)
.++.+++||||+|+|..
T Consensus 122 ~gr~KViIIDEah~Ls~ 138 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTN 138 (700)
T ss_pred cCCceEEEEEChHhcCH
Confidence 45788999999999965
No 247
>PRK09401 reverse gyrase; Reviewed
Probab=95.25 E-value=0.032 Score=57.80 Aligned_cols=76 Identities=22% Similarity=0.183 Sum_probs=51.9
Q ss_pred HHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchhhhhhcCee--eeccCCCeeEEEEcccccccchhHHHHHHHH
Q psy4493 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC--LMTESSSLKLLYVSPEKLAKSKSFMTKLQKM 132 (323)
Q Consensus 55 ~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs~l~~~~i~--l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~ 132 (323)
+...+++.+|+ .|+++|..+++.+++|++++++||||+.=...+.. +........++|.+|-+.+. .+....++..
T Consensus 69 ~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa-~Qi~~~l~~l 146 (1176)
T PRK09401 69 FEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLV-EQVVEKLEKF 146 (1176)
T ss_pred HHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHH-HHHHHHHHHH
Confidence 34455566788 79999999999999999999999999911111111 11112356789999998883 4555555554
No 248
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.14 E-value=0.049 Score=53.57 Aligned_cols=123 Identities=10% Similarity=0.105 Sum_probs=69.5
Q ss_pred CCCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC-
Q psy4493 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK- 82 (323)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~- 82 (323)
|||-+.+.....++++.+.++--.|..........+. -..+.-... ..+...+.+.++| .|+++|.+|++.+.++
T Consensus 202 H~P~~~~~~~~a~~rl~~~El~~~q~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~ 277 (681)
T PRK10917 202 HFPPSDEDLHPARRRLKFEELFALQLSLLLLRAGRRS--KKAGPLPYD-GELLKKFLASLPF-ELTGAQKRVVAEILADL 277 (681)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCCCCCC-hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhh
Confidence 5676665555666666666666666553211110110 011111112 3344455555888 4999999999999876
Q ss_pred -----CcEEEEccchh-hhhhcCee-eeccCCCeeEEEEcccccccchhHHHHHHH
Q psy4493 83 -----KDAIIIMPTGK-LLKKKKIC-LMTESSSLKLLYVSPEKLAKSKSFMTKLQK 131 (323)
Q Consensus 83 -----~~~lv~~pTgs-~l~~~~i~-l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~ 131 (323)
.+.++++|||+ .....-.. +........++|++|-+.+.. +....++.
T Consensus 278 ~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~-Q~~~~l~~ 332 (681)
T PRK10917 278 ASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAE-QHYENLKK 332 (681)
T ss_pred hccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHH-HHHHHHHH
Confidence 47999999999 10000011 111123567999999988843 33344444
No 249
>PRK14701 reverse gyrase; Provisional
Probab=95.14 E-value=0.036 Score=59.15 Aligned_cols=75 Identities=19% Similarity=0.179 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--hhhhcCee--eeccCCCeeEEEEcccccccchhHHHH
Q psy4493 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--LLKKKKIC--LMTESSSLKLLYVSPEKLAKSKSFMTK 128 (323)
Q Consensus 53 ~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l~~~~i~--l~~~~~~~~vii~Tp~~l~~~~~~~~~ 128 (323)
..+...+++.+|+ .|+++|.++++.+++|+++++++|||+ .+ .+.. +........++|.+|-+.+. .+..+.
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl--~~~~~al~~~~~g~~aLVl~PTreLa-~Qi~~~ 141 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKST--FGAFIALFLALKGKKCYIILPTTLLV-KQTVEK 141 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHH--HHHHHHHHHHhcCCeEEEEECHHHHH-HHHHHH
Confidence 4556677777899 699999999999999999999999999 11 1111 11112235788999988873 344444
Q ss_pred HHH
Q psy4493 129 LQK 131 (323)
Q Consensus 129 l~~ 131 (323)
++.
T Consensus 142 l~~ 144 (1638)
T PRK14701 142 IES 144 (1638)
T ss_pred HHH
Confidence 444
No 250
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.13 E-value=0.27 Score=43.63 Aligned_cols=75 Identities=11% Similarity=-0.059 Sum_probs=38.7
Q ss_pred CCCeeEEEEccc--ccccchhHHHHHHH---HHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEee
Q psy4493 106 SSSLKLLYVSPE--KLAKSKSFMTKLQK---MYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180 (323)
Q Consensus 106 ~~~~~vii~Tp~--~l~~~~~~~~~l~~---~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSA 180 (323)
...+|+.+..|+ .-..-...++..+. ....+..+++|||+||.|... ..+.|-......|...+++|++
T Consensus 71 g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~------AaNaLLKtLEEPp~~~~fiL~t 144 (325)
T PRK06871 71 GNHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEA------AANALLKTLEEPRPNTYFLLQA 144 (325)
T ss_pred CCCCCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHH------HHHHHHHHhcCCCCCeEEEEEE
Confidence 345667666663 11112233333332 223457789999999998652 2233433444445444555555
Q ss_pred cCChhH
Q psy4493 181 TATTKV 186 (323)
Q Consensus 181 T~~~~~ 186 (323)
+-+..+
T Consensus 145 ~~~~~l 150 (325)
T PRK06871 145 DLSAAL 150 (325)
T ss_pred CChHhC
Confidence 544333
No 251
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.11 E-value=0.026 Score=50.85 Aligned_cols=91 Identities=12% Similarity=0.023 Sum_probs=48.1
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchhhhhhcCeeeec--cCCCeeEEEEcccc
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMT--ESSSLKLLYVSPEK 118 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs~l~~~~i~l~~--~~~~~~vii~Tp~~ 118 (323)
++|....|+|||..+...++.. .....++.++++.+.+.......-.+.. ........+..|..
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l--------------~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ 69 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKEL--------------QNSEEGKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTS 69 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHh--------------hccccCCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHH
Confidence 4566799999997777776652 1122456677777776622211101100 01112223333333
Q ss_pred cccchhHHHHHH-HHHhhCCcceEEEeccccccc
Q psy4493 119 LAKSKSFMTKLQ-KMYKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 119 l~~~~~~~~~l~-~~~~~~~v~~vVvDEah~~~~ 151 (323)
+.. ... ........++|||||||.+.+
T Consensus 70 ~i~------~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 70 FIN------NYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred HHh------hcccccccCCcCCEEEEehhHhhhh
Confidence 321 111 111235789999999999987
No 252
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.08 E-value=0.058 Score=53.33 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=33.4
Q ss_pred hcCCCCCChhHHHHHHHHh----cCCCeEEEcCCCCCchHHHHHHHH
Q psy4493 18 KFNLTDFRPNQLAAINIAL----LKKDAIIIMPTDYPWSDRVRSVLK 60 (323)
Q Consensus 18 ~~~~~~~~~~Q~~~~~~~~----~~~~~~~~~~tg~gkt~~~~~~l~ 60 (323)
.|.++.+||.|.+.++.+. .++++++.+|||.|||..++....
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL 51 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLIL 51 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHH
Confidence 4567778999999776553 578899999999999976654443
No 253
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.06 E-value=1.1 Score=43.34 Aligned_cols=151 Identities=11% Similarity=0.094 Sum_probs=82.2
Q ss_pred cHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEE
Q psy4493 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAII 87 (323)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv 87 (323)
.+++...|+..|+.+.+.+.- ++ ....+--+...|---|||..+.-.+.. .-....|.++++
T Consensus 228 a~r~~~~lk~~Fdi~~~s~~~---~~-~fkqk~tVflVPRR~GKTwivv~iI~~--------------ll~s~~Gi~Igy 289 (738)
T PHA03368 228 AERVERFLRTVFNTPLFSDAA---VR-HFRQRATVFLVPRRHGKTWFLVPLIAL--------------ALATFRGIKIGY 289 (738)
T ss_pred HHHHHHHHHHHcCCccccHHH---HH-HhhccceEEEecccCCchhhHHHHHHH--------------HHHhCCCCEEEE
Confidence 456888999999999988733 22 334666777889999999766632221 111235788999
Q ss_pred Eccchh-----------hhhhcCe-e-eeccCCCeeEEE-Eccc---ccccchhHHHHH-HHHHhhCCcceEEEeccccc
Q psy4493 88 IMPTGK-----------LLKKKKI-C-LMTESSSLKLLY-VSPE---KLAKSKSFMTKL-QKMYKAGCLARIAIDEVHCC 149 (323)
Q Consensus 88 ~~pTgs-----------~l~~~~i-~-l~~~~~~~~vii-~Tp~---~l~~~~~~~~~l-~~~~~~~~v~~vVvDEah~~ 149 (323)
.||... .+....- . .....+. .|.+ -..+ ++. |..-- .....-+.++++|||||+.+
T Consensus 290 tAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-~I~i~f~nG~kstI~----FaSarntNsiRGqtfDLLIVDEAqFI 364 (738)
T PHA03368 290 TAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-TISFSFPDGSRSTIV----FASSHNTNGIRGQDFNLLFVDEANFI 364 (738)
T ss_pred EcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-EEEEEecCCCccEEE----EEeccCCCCccCCcccEEEEechhhC
Confidence 999887 1121100 0 1111111 1211 1111 111 10000 00112237899999999988
Q ss_pred cccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHH
Q psy4493 150 SSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVML 188 (323)
Q Consensus 150 ~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~ 188 (323)
.+. .+..+--.... .+.++|.+|.|-+.....
T Consensus 365 k~~------al~~ilp~l~~-~n~k~I~ISS~Ns~~~sT 396 (738)
T PHA03368 365 RPD------AVQTIMGFLNQ-TNCKIIFVSSTNTGKAST 396 (738)
T ss_pred CHH------HHHHHHHHHhc-cCccEEEEecCCCCccch
Confidence 651 12222122222 288999999997764433
No 254
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.96 E-value=0.047 Score=53.20 Aligned_cols=121 Identities=12% Similarity=0.209 Sum_probs=68.3
Q ss_pred CCCCcHHHHHHHHHhcCCCCCChhHHHHHHHHh--cCC-CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHh
Q psy4493 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIAL--LKK-DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIAL 80 (323)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~--~~~-~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~ 80 (323)
|+|-+.+.....++++.+.++--.|........ ... ......+.+ ..+...+. .++| .|++.|.+|++.+.
T Consensus 175 H~P~~~~~~~~a~~rl~~~E~~~~ql~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~lpf-~lt~~Q~~ai~~I~ 248 (630)
T TIGR00643 175 HFPKTLSLLELARRRLIFDEFFYLQLAMLARRLGEKQQFSAPPANPSE----ELLTKFLA-SLPF-KLTRAQKRVVKEIL 248 (630)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCh----HHHHHHHH-hCCC-CCCHHHHHHHHHHH
Confidence 566666555666667777776666655422111 111 111111221 22333444 4888 69999999999987
Q ss_pred cC------CcEEEEccchh-hhhhcCee-eeccCCCeeEEEEcccccccchhHHHHHHH
Q psy4493 81 LK------KDAIIIMPTGK-LLKKKKIC-LMTESSSLKLLYVSPEKLAKSKSFMTKLQK 131 (323)
Q Consensus 81 ~~------~~~lv~~pTgs-~l~~~~i~-l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~ 131 (323)
++ .+.++++|||+ .....-.. +........++|++|.+.+. .+....++.
T Consensus 249 ~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA-~Q~~~~~~~ 306 (630)
T TIGR00643 249 QDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILA-EQHYNSLRN 306 (630)
T ss_pred HHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHH-HHHHHHHHH
Confidence 75 25899999999 10000011 11112356799999998884 344444444
No 255
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.96 E-value=0.5 Score=42.26 Aligned_cols=46 Identities=9% Similarity=-0.008 Sum_probs=26.7
Q ss_pred hCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhH
Q psy4493 135 AGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186 (323)
Q Consensus 135 ~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 186 (323)
.+..+++|||+||.|... ..+.|-......|...+++|.++-+..+
T Consensus 130 ~~~~kV~iI~~ae~m~~~------AaNaLLKtLEEPp~~t~fiL~t~~~~~L 175 (342)
T PRK06964 130 RGGARVVVLYPAEALNVA------AANALLKTLEEPPPGTVFLLVSARIDRL 175 (342)
T ss_pred cCCceEEEEechhhcCHH------HHHHHHHHhcCCCcCcEEEEEECChhhC
Confidence 356789999999999642 2233433444445444555555544433
No 256
>KOG0352|consensus
Probab=94.92 E-value=0.038 Score=49.62 Aligned_cols=40 Identities=38% Similarity=0.492 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCCCCC-CcchHHHHHHHhcC-CcEEEEccchh
Q psy4493 54 RVRSVLKSKFNLTDF-RPNQLAAINIALLK-KDAIIIMPTGK 93 (323)
Q Consensus 54 ~~~~~l~~~~g~~~~-~~~Q~~~i~~~~~~-~~~lv~~pTgs 93 (323)
.+.++|++.||++.| ++.|..|+.++.++ +||.|++|||+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGa 47 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGA 47 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCC
Confidence 467899999999999 58999999998776 68999999999
No 257
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.80 E-value=0.52 Score=46.33 Aligned_cols=43 Identities=19% Similarity=0.126 Sum_probs=24.7
Q ss_pred CCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCCh
Q psy4493 136 GCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATT 184 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~ 184 (323)
.+.+++||||+|+|... .++.|-+.....+..-+++|++|-..
T Consensus 118 gr~KVIIIDEah~LT~~------A~NALLKtLEEPP~~v~FILaTtd~~ 160 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNH------AFNAMLKTLEEPPPHVKFILATTDPQ 160 (830)
T ss_pred CCceEEEEeChhhCCHH------HHHHHHHHHHhcCCCeEEEEEECChh
Confidence 46789999999999652 22333333344444444555555443
No 258
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.78 E-value=0.5 Score=46.24 Aligned_cols=117 Identities=14% Similarity=0.129 Sum_probs=69.3
Q ss_pred hhHHHHHHHHhcCC--CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh----------
Q psy4493 26 PNQLAAINIALLKK--DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK---------- 93 (323)
Q Consensus 26 ~~Q~~~~~~~~~~~--~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs---------- 93 (323)
..|.+.++..+..+ .+++.+.-|-|||+.+--++.. +......-+++|.+||-+
T Consensus 217 ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~--------------~~~~~~~~~iiVTAP~~~nv~~Lf~fa~ 282 (758)
T COG1444 217 AEALEILERLLDAPKRALVLTADRGRGKSAALGIALAA--------------AARLAGSVRIIVTAPTPANVQTLFEFAG 282 (758)
T ss_pred HHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHH--------------HHHhcCCceEEEeCCCHHHHHHHHHHHH
Confidence 34444555566543 4777889999999876544411 211212347999999999
Q ss_pred -hhhhcCee--e---------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHH
Q psy4493 94 -LLKKKKIC--L---------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQ 161 (323)
Q Consensus 94 -~l~~~~i~--l---------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~ 161 (323)
.+...|.. + ........|=+..|..... .-+++|||||=.+.- -
T Consensus 283 ~~l~~lg~~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a~~---------------~~DllvVDEAAaIpl---------p 338 (758)
T COG1444 283 KGLEFLGYKRKVAPDALGEIREVSGDGFRIEYVPPDDAQE---------------EADLLVVDEAAAIPL---------P 338 (758)
T ss_pred HhHHHhCCccccccccccceeeecCCceeEEeeCcchhcc---------------cCCEEEEehhhcCCh---------H
Confidence 33344433 0 1222334456666765531 257899999987642 1
Q ss_pred hHHHHHhhCCCCCEEEEeecCC
Q psy4493 162 YLSILKTMFPDVPILGLTATAT 183 (323)
Q Consensus 162 ~l~~l~~~~~~~~~i~lSAT~~ 183 (323)
. +.......+.++||.|+.
T Consensus 339 l---L~~l~~~~~rv~~sTTIh 357 (758)
T COG1444 339 L---LHKLLRRFPRVLFSTTIH 357 (758)
T ss_pred H---HHHHHhhcCceEEEeeec
Confidence 2 333333447888999976
No 259
>PLN03025 replication factor C subunit; Provisional
Probab=94.72 E-value=0.33 Score=43.05 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=17.9
Q ss_pred CCeEEEcCCCCCchHHHHHHHHhc
Q psy4493 39 KDAIIIMPTDYPWSDRVRSVLKSK 62 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~l~~~ 62 (323)
.++++..|+|.|||..+....+..
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 357889999999997666555543
No 260
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=94.72 E-value=0.083 Score=51.43 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=44.0
Q ss_pred CCCChhHHHHHHHHhcC-CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 22 TDFRPNQLAAINIALLK-KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~-~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
..+.+.|..++..++.. ...++..|+|.|||..+...+... +.+|+.+++++||+.
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~----------------~~~g~~VLv~a~sn~ 212 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQL----------------VKRGLRVLVTAPSNI 212 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHH----------------HHcCCCEEEEcCcHH
Confidence 45678999999988876 456678899999998776666431 236788999999998
No 261
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.68 E-value=0.39 Score=45.52 Aligned_cols=16 Identities=44% Similarity=0.501 Sum_probs=13.6
Q ss_pred CCcceEEEeccccccc
Q psy4493 136 GCLARIAIDEVHCCSS 151 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~ 151 (323)
++.+++||||+|++..
T Consensus 118 ~~~kV~iIDE~~~ls~ 133 (509)
T PRK14958 118 GRFKVYLIDEVHMLSG 133 (509)
T ss_pred CCcEEEEEEChHhcCH
Confidence 4678999999999865
No 262
>KOG1015|consensus
Probab=94.61 E-value=0.042 Score=54.11 Aligned_cols=91 Identities=14% Similarity=0.005 Sum_probs=67.6
Q ss_pred HHHHHHh-hcCCCcEEEEeCChhHHHHHHHHHHhC---C-------------------CeEEeecCCCCCCc--------
Q psy4493 229 LADLMSR-RFRNQSGIIYTTSIKECEDLREELRNR---G-------------------LRVSAYHAKLESNV-------- 277 (323)
Q Consensus 229 l~~~l~~-~~~~~~~iVF~~s~~~~~~l~~~L~~~---~-------------------~~v~~~h~~~~~~~-------- 277 (323)
|+++|+. ..-+.+.|||..|...-..+..+|... | ..-.-+-|..+..+
T Consensus 1131 LleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~F 1210 (1567)
T KOG1015|consen 1131 LLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEF 1210 (1567)
T ss_pred HHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHh
Confidence 5555542 224789999999999888777777632 1 11222223333222
Q ss_pred --------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCC
Q psy4493 278 --------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSF 319 (323)
Q Consensus 278 --------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g 319 (323)
|.+.+.|||+-..+.||.||..|++.-=+|-+=|+-|+|+.-
T Consensus 1211 Ndp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtK 1266 (1567)
T KOG1015|consen 1211 NDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTK 1266 (1567)
T ss_pred cCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcC
Confidence 999999999999999999999999998899999999999864
No 263
>PRK08727 hypothetical protein; Validated
Probab=94.60 E-value=0.31 Score=41.09 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=13.9
Q ss_pred CCcceEEEecccccccc
Q psy4493 136 GCLARIAIDEVHCCSSW 152 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~~ 152 (323)
.+.+++|+||+|.+..+
T Consensus 92 ~~~dlLiIDDi~~l~~~ 108 (233)
T PRK08727 92 EGRSLVALDGLESIAGQ 108 (233)
T ss_pred hcCCEEEEeCcccccCC
Confidence 47789999999988653
No 264
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.53 E-value=0.25 Score=47.73 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=13.7
Q ss_pred CCcceEEEeccccccc
Q psy4493 136 GCLARIAIDEVHCCSS 151 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~ 151 (323)
++.+++||||+|+|..
T Consensus 123 g~~KV~IIDEvh~Ls~ 138 (618)
T PRK14951 123 GRFKVFMIDEVHMLTN 138 (618)
T ss_pred CCceEEEEEChhhCCH
Confidence 4678999999999865
No 265
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.51 E-value=0.93 Score=43.92 Aligned_cols=136 Identities=10% Similarity=0.112 Sum_probs=71.3
Q ss_pred HHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-----------hhh
Q psy4493 28 QLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-----------LLK 96 (323)
Q Consensus 28 Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-----------~l~ 96 (323)
+...+-..+..+--++.+|-|-|||..+...+... ....+.++++.||... .+.
T Consensus 177 ~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~L---------------a~f~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 177 EIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAM---------------ISFLEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred HHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHH---------------HHhcCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 33444445567777888999999998776554331 1114788999999777 222
Q ss_pred hcCee---------eeccCCCeeEEEEcccccc---cchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHH
Q psy4493 97 KKKIC---------LMTESSSLKLLYVSPEKLA---KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLS 164 (323)
Q Consensus 97 ~~~i~---------l~~~~~~~~vii~Tp~~l~---~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~ 164 (323)
..+.. .....+...|.+..|.-.. ....|...-.+...-...+++|||||..+.. +.+..+.
T Consensus 242 ~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~------~~l~aIl 315 (752)
T PHA03333 242 AYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNP------GALLSVL 315 (752)
T ss_pred HhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCH------HHHHHHH
Confidence 22211 1122222334444432222 0001100101111113578999999998854 1222222
Q ss_pred HHHhhCCCCCEEEEeecCChh
Q psy4493 165 ILKTMFPDVPILGLTATATTK 185 (323)
Q Consensus 165 ~l~~~~~~~~~i~lSAT~~~~ 185 (323)
-.... .+.+++.+|.+-+..
T Consensus 316 P~l~~-~~~k~IiISS~~~~~ 335 (752)
T PHA03333 316 PLMAV-KGTKQIHISSPVDAD 335 (752)
T ss_pred HHHcc-CCCceEEEeCCCCcc
Confidence 22222 267888888887543
No 266
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.47 E-value=0.46 Score=46.13 Aligned_cols=17 Identities=41% Similarity=0.448 Sum_probs=14.3
Q ss_pred hCCcceEEEeccccccc
Q psy4493 135 AGCLARIAIDEVHCCSS 151 (323)
Q Consensus 135 ~~~v~~vVvDEah~~~~ 151 (323)
.++.+++||||+|+|..
T Consensus 117 ~g~~KV~IIDEah~Ls~ 133 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSR 133 (647)
T ss_pred cCCCEEEEEechHhCCH
Confidence 45788999999999865
No 267
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=94.46 E-value=0.087 Score=52.39 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=20.9
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHh
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRN 261 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~ 261 (323)
.++++||||+...+|..+.++|..
T Consensus 294 ~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 294 GPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred CCCcEEEEEcchHHHHHHHHHHHh
Confidence 457899999999999999998865
No 268
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.41 E-value=0.74 Score=41.93 Aligned_cols=55 Identities=11% Similarity=0.032 Sum_probs=33.9
Q ss_pred CCcceEEEeccccccccCCCchHHHHhHHHHHhhC-CC-CCEEEEeecCChhHHHHHHHHh
Q psy4493 136 GCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF-PD-VPILGLTATATTKVMLDVQKML 194 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~-~~-~~~i~lSAT~~~~~~~~i~~~l 194 (323)
.+.++|+||++.+... ....+.++..+.... +. -.++.+|||.......++...+
T Consensus 253 ~~~DlVLIDTaGr~~~----~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 253 KDFDLVLVDTIGKSPK----DFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred CCCCEEEEcCCCCCcc----CHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 5789999999997643 111233444443332 23 3678899999876655554443
No 269
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.41 E-value=1.1 Score=39.57 Aligned_cols=56 Identities=9% Similarity=0.166 Sum_probs=32.2
Q ss_pred CCCCCCcHHHHHH-HHHhcCCCCCChhHHHHHHHHhcCC---CeEEEcCCCCCchHHHHHHHHh
Q psy4493 2 LPNYPWSDRVRSV-LKSKFNLTDFRPNQLAAINIALLKK---DAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 2 ~~~~~~~~~~~~~-l~~~~~~~~~~~~Q~~~~~~~~~~~---~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
+..+||.++++-. +.+-.+ ++...+.+..+..+. .+++..|+|+|||..+......
T Consensus 2 ~~~~~w~~kyrP~~~~~~~g----~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 2 MMEEIWVEKYRPRTLDEIVG----QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred CccCccchhhCCCcHHHhcC----cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568898765442 222111 233444454444332 4788889999999766555444
No 270
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=94.40 E-value=0.58 Score=39.06 Aligned_cols=56 Identities=13% Similarity=0.102 Sum_probs=38.7
Q ss_pred CCCCcHH--HHHHHHHhcCCCCCChhHHHHHHHHhc---CCCeEEEcCCCCCchHHHHHHH
Q psy4493 4 NYPWSDR--VRSVLKSKFNLTDFRPNQLAAINIALL---KKDAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 4 ~~~~~~~--~~~~l~~~~~~~~~~~~Q~~~~~~~~~---~~~~~~~~~tg~gkt~~~~~~l 59 (323)
|-.|+.. ..-+|-..-+.--+|+.|.+......+ +++.+.-+-.|.|||..+.=.+
T Consensus 2 h~~w~p~~~P~wLl~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pml 62 (229)
T PF12340_consen 2 HRNWDPMEYPDWLLFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPML 62 (229)
T ss_pred CCCCCchhChHHHHHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHH
Confidence 3456442 334444445567789999998887765 4678889999999997655444
No 271
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.38 E-value=0.48 Score=45.84 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=24.0
Q ss_pred CCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCC
Q psy4493 136 GCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~ 183 (323)
++.+++||||+|++... ....|.......+..-.+.|++|-+
T Consensus 117 gk~KV~IIDEVh~LS~~------A~NALLKtLEEPP~~v~FILaTtd~ 158 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTH------SFNALLKTLEEPPEHVKFLFATTDP 158 (702)
T ss_pred CCcEEEEEechHhcCHH------HHHHHHHHHhcCCCCcEEEEEECCh
Confidence 46789999999988652 2233333334434333444555533
No 272
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=94.32 E-value=0.11 Score=41.07 Aligned_cols=62 Identities=23% Similarity=0.319 Sum_probs=39.3
Q ss_pred CcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----eeccCCCeeEEEEcccccccchhHHHHHHHH
Q psy4493 69 RPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----LMTESSSLKLLYVSPEKLAKSKSFMTKLQKM 132 (323)
Q Consensus 69 ~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~ 132 (323)
+|+|.++++.+.+++++++.+|||+ .-...-.. +... ....++|..|.+-+. ......+...
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~-~q~~~~~~~~ 67 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALA-EQQFERLRKF 67 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHH-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccc-cccccccccc
Confidence 5789999999999999999999999 00000001 1112 334889999987663 3334444443
No 273
>KOG0340|consensus
Probab=94.23 E-value=0.041 Score=48.23 Aligned_cols=43 Identities=19% Similarity=0.081 Sum_probs=37.8
Q ss_pred HhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHH
Q psy4493 17 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 17 ~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l 59 (323)
+.+++..+.|.|..+++.++.|+|.+-.+.||+|||..+..-+
T Consensus 23 ~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPi 65 (442)
T KOG0340|consen 23 KALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPI 65 (442)
T ss_pred HHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHH
Confidence 3568999999999999999999999999999999998765433
No 274
>KOG0948|consensus
Probab=94.09 E-value=0.04 Score=52.92 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=54.3
Q ss_pred CCcchHHHHHHHhcCCcEEEEccchh---hhhhcCeeeeccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceE
Q psy4493 68 FRPNQLAAINIALLKKDAIIIMPTGK---LLKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARI 141 (323)
Q Consensus 68 ~~~~Q~~~i~~~~~~~~~lv~~pTgs---~l~~~~i~l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~v 141 (323)
+-|+|..||..+-.+.+++|.|.|.+ .+....|. .....+-+||+++|-+.+.++.|++++..+ ++|+++
T Consensus 130 LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA-~sLr~kQRVIYTSPIKALSNQKYREl~~EF---~DVGLM 202 (1041)
T KOG0948|consen 130 LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIA-MSLREKQRVIYTSPIKALSNQKYRELLEEF---KDVGLM 202 (1041)
T ss_pred cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHH-HHHHhcCeEEeeChhhhhcchhHHHHHHHh---ccccee
Confidence 45899999999999999999999988 44444444 223445689999999999888888887764 456554
No 275
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.08 E-value=0.47 Score=38.38 Aligned_cols=86 Identities=10% Similarity=0.104 Sum_probs=50.0
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchhhhhhc-Cee-e--eccCCCeeEEEEcc
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKK-KIC-L--MTESSSLKLLYVSP 116 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs~l~~~-~i~-l--~~~~~~~~vii~Tp 116 (323)
-++..|..+|||+.++..++++ ...|+.+++.-|- +... +.. + .......-++|-.+
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~----------------~~~g~~v~vfkp~---iD~R~~~~~V~Sr~G~~~~A~~i~~~ 67 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRY----------------KEAGMKVLVFKPA---IDTRYGVGKVSSRIGLSSEAVVIPSD 67 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHH----------------HHcCCeEEEEecc---cccccccceeeeccCCcccceecCCh
Confidence 4567799999999988888772 2367788888774 2222 222 1 11222233444333
Q ss_pred cccccchhHHHHHHHHHhhCCcceEEEeccccccc
Q psy4493 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 117 ~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~ 151 (323)
..+. +.+........++.|.||||+-+..
T Consensus 68 ~~i~------~~i~~~~~~~~~~~v~IDEaQF~~~ 96 (201)
T COG1435 68 TDIF------DEIAALHEKPPVDCVLIDEAQFFDE 96 (201)
T ss_pred HHHH------HHHHhcccCCCcCEEEEehhHhCCH
Confidence 3332 2444322222388999999997754
No 276
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.05 E-value=0.46 Score=46.16 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=16.7
Q ss_pred CeEEEcCCCCCchHHHHHHHHh
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
..++..|.|.|||..+....+.
T Consensus 40 a~Lf~Gp~G~GKttlA~~lAk~ 61 (620)
T PRK14948 40 AYLFTGPRGTGKTSSARILAKS 61 (620)
T ss_pred eEEEECCCCCChHHHHHHHHHH
Confidence 4578899999999766655555
No 277
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.01 E-value=0.86 Score=36.64 Aligned_cols=95 Identities=9% Similarity=0.054 Sum_probs=50.3
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh------hhhhcCeeee--ccCCCeeEE
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK------LLKKKKICLM--TESSSLKLL 112 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs------~l~~~~i~l~--~~~~~~~vi 112 (323)
.++..|+|.|||.-..+.+ ...+.+|+.++++...-+ .+...|+.+. ...+...++
T Consensus 2 ~li~G~~G~GKT~l~~~~~----------------~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~ 65 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFL----------------YAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIV 65 (187)
T ss_pred EEEEcCCCCCHHHHHHHHH----------------HHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEE
Confidence 4678899999996544433 223456777777764433 4444565531 112222333
Q ss_pred EEcccccccch-----hHHHHHHHHHhhCCcceEEEeccccccc
Q psy4493 113 YVSPEKLAKSK-----SFMTKLQKMYKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 113 i~Tp~~l~~~~-----~~~~~l~~~~~~~~v~~vVvDEah~~~~ 151 (323)
=..|..+.... .+...+.......+.+++|+||.-.+.+
T Consensus 66 d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 66 DADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred ecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 33333332111 1122333333334789999999997754
No 278
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.00 E-value=0.31 Score=48.72 Aligned_cols=21 Identities=10% Similarity=-0.056 Sum_probs=16.1
Q ss_pred eEEEcCCCCCchHHHHHHHHh
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~ 61 (323)
.++..|.|.|||..+....+.
T Consensus 41 yLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 478889999999766655555
No 279
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.78 E-value=0.44 Score=45.68 Aligned_cols=21 Identities=14% Similarity=0.050 Sum_probs=15.5
Q ss_pred eEEEcCCCCCchHHHHHHHHh
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~ 61 (323)
.++..|.|.|||..+....+.
T Consensus 41 ~Lf~GP~GvGKTTlA~~lAk~ 61 (605)
T PRK05896 41 YIFSGPRGIGKTSIAKIFAKA 61 (605)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 668899999999665554444
No 280
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.77 E-value=0.21 Score=50.61 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=51.8
Q ss_pred CchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC------CcEEEEccchh-hhhhcCee-eeccCCCeeEEEEccccccc
Q psy4493 50 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK------KDAIIIMPTGK-LLKKKKIC-LMTESSSLKLLYVSPEKLAK 121 (323)
Q Consensus 50 gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~------~~~lv~~pTgs-~l~~~~i~-l~~~~~~~~vii~Tp~~l~~ 121 (323)
.........+.+.|+++ |++.|.+||+.+.++ ++.++++|||+ .....-.. +........++|.+|-+.+.
T Consensus 435 ~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA 513 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLA 513 (926)
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHH
Confidence 34455666677779995 899999999999874 68999999999 00000000 01112236799999999885
Q ss_pred chhHHHHHHH
Q psy4493 122 SKSFMTKLQK 131 (323)
Q Consensus 122 ~~~~~~~l~~ 131 (323)
. +....++.
T Consensus 514 ~-Q~~~~f~~ 522 (926)
T TIGR00580 514 Q-QHFETFKE 522 (926)
T ss_pred H-HHHHHHHH
Confidence 3 33333333
No 281
>KOG0333|consensus
Probab=93.74 E-value=0.054 Score=49.90 Aligned_cols=49 Identities=24% Similarity=0.219 Sum_probs=44.8
Q ss_pred EcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 44 IMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 44 ~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
-.+...|.+..+++++.. .|+..|+|+|..|||..++.+|+|.+|.|||
T Consensus 245 rnwEE~~~P~e~l~~I~~-~~y~eptpIqR~aipl~lQ~rD~igvaETgs 293 (673)
T KOG0333|consen 245 RNWEESGFPLELLSVIKK-PGYKEPTPIQRQAIPLGLQNRDPIGVAETGS 293 (673)
T ss_pred cChhhcCCCHHHHHHHHh-cCCCCCchHHHhhccchhccCCeeeEEeccC
Confidence 446678888899998888 8999999999999999999999999999999
No 282
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.74 E-value=0.33 Score=40.54 Aligned_cols=73 Identities=11% Similarity=0.202 Sum_probs=35.2
Q ss_pred CeeEEEEcccccccchhHHHHHHH------HHhhCCcceEEEeccccccccCCCchHHHHh-HHHHHhhCCCCCEEEEee
Q psy4493 108 SLKLLYVSPEKLAKSKSFMTKLQK------MYKAGCLARIAIDEVHCCSSWGHDFRPDYQY-LSILKTMFPDVPILGLTA 180 (323)
Q Consensus 108 ~~~vii~Tp~~l~~~~~~~~~l~~------~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~-l~~l~~~~~~~~~i~lSA 180 (323)
+.+|++.+.+.+.. .+.+.++. .......++++||.+|.+.... .....+.. +..+.. .+.++|+.|.
T Consensus 64 ~~~v~y~~~~~f~~--~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~-~~q~~lf~l~n~~~~--~~k~li~ts~ 138 (219)
T PF00308_consen 64 GKRVVYLSAEEFIR--EFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQ-RTQEELFHLFNRLIE--SGKQLILTSD 138 (219)
T ss_dssp TS-EEEEEHHHHHH--HHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHH-HHHHHHHHHHHHHHH--TTSEEEEEES
T ss_pred cccceeecHHHHHH--HHHHHHHcccchhhhhhhhcCCEEEEecchhhcCch-HHHHHHHHHHHHHHh--hCCeEEEEeC
Confidence 34577777666542 22222211 1123588999999999886421 11112111 222222 2556666665
Q ss_pred cCChh
Q psy4493 181 TATTK 185 (323)
Q Consensus 181 T~~~~ 185 (323)
..|.+
T Consensus 139 ~~P~~ 143 (219)
T PF00308_consen 139 RPPSE 143 (219)
T ss_dssp S-TTT
T ss_pred CCCcc
Confidence 66554
No 283
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=93.58 E-value=0.32 Score=48.03 Aligned_cols=66 Identities=23% Similarity=0.050 Sum_probs=43.5
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHH---hcC------CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHH-Hhc
Q psy4493 12 RSVLKSKFNLTDFRPNQLAAINIA---LLK------KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINI-ALL 81 (323)
Q Consensus 12 ~~~l~~~~~~~~~~~~Q~~~~~~~---~~~------~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~-~~~ 81 (323)
...|.+.+..-++|+.|.+-++.+ +.+ +.+++.+|||.|||-..+ ..++.. ...
T Consensus 14 ~~~l~~~~~~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYL----------------lPai~~A~~~ 77 (697)
T PRK11747 14 YKALQEQLPGFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYL----------------LAGIPIARAE 77 (697)
T ss_pred HHHHHHhCCCCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHH----------------HHHHHHHHHc
Confidence 346777777788999999954444 443 568889999999993311 112221 125
Q ss_pred CCcEEEEccchh
Q psy4493 82 KKDAIIIMPTGK 93 (323)
Q Consensus 82 ~~~~lv~~pTgs 93 (323)
++.++|...|.+
T Consensus 78 ~k~vVIST~T~~ 89 (697)
T PRK11747 78 KKKLVISTATVA 89 (697)
T ss_pred CCeEEEEcCCHH
Confidence 677888888777
No 284
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.53 E-value=2 Score=39.29 Aligned_cols=79 Identities=14% Similarity=0.105 Sum_probs=40.6
Q ss_pred CCeeEEEEccccc-ccchhHHHHHHHH---HhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecC
Q psy4493 107 SSLKLLYVSPEKL-AKSKSFMTKLQKM---YKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182 (323)
Q Consensus 107 ~~~~vii~Tp~~l-~~~~~~~~~l~~~---~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~ 182 (323)
..+++.+.+|+.. ..-...+...+.. ....+.+++||||+|.|.... ...|-......+...++++++|-
T Consensus 83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~a------anaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 83 THPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERA------ANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHH------HHHHHHHhhcCCCCCeEEEEECC
Confidence 4567777677532 1112233333322 123466799999999996521 12232333444445566676665
Q ss_pred ChhHHHHHH
Q psy4493 183 TTKVMLDVQ 191 (323)
Q Consensus 183 ~~~~~~~i~ 191 (323)
+..+...+.
T Consensus 157 ~~~llpTIr 165 (394)
T PRK07940 157 PEDVLPTIR 165 (394)
T ss_pred hHHChHHHH
Confidence 544433333
No 285
>KOG0351|consensus
Probab=93.48 E-value=0.079 Score=53.29 Aligned_cols=41 Identities=46% Similarity=0.732 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 53 ~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
......+...||.+.+++.|.++|.+.+.|++++|++|||+
T Consensus 250 ~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~ 290 (941)
T KOG0351|consen 250 KELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGG 290 (941)
T ss_pred hHHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCC
Confidence 35677788889999999999999999999999999999998
No 286
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.39 E-value=0.39 Score=46.28 Aligned_cols=21 Identities=10% Similarity=-0.070 Sum_probs=15.6
Q ss_pred eEEEcCCCCCchHHHHHHHHh
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~ 61 (323)
.++..|.|.|||.......+.
T Consensus 41 ~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 41 YLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 567889999999765555544
No 287
>PHA02533 17 large terminase protein; Provisional
Probab=93.32 E-value=2.5 Score=40.31 Aligned_cols=58 Identities=12% Similarity=-0.001 Sum_probs=39.7
Q ss_pred CCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 22 TDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
-.++|+|...+.....++-.++..+-..|||..+...+.. .++ ...+..++++||+..
T Consensus 58 f~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~------------~a~--~~~~~~v~i~A~~~~ 115 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLH------------YVC--FNKDKNVGILAHKAS 115 (534)
T ss_pred cCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHH------------HHH--hCCCCEEEEEeCCHH
Confidence 3467899998887655666778889999999765543321 011 123567888999887
No 288
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.29 E-value=0.41 Score=43.37 Aligned_cols=21 Identities=14% Similarity=-0.024 Sum_probs=15.9
Q ss_pred eEEEcCCCCCchHHHHHHHHh
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~ 61 (323)
.++..|.|.|||..+....+.
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~ 61 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKS 61 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHH
Confidence 478899999999766555544
No 289
>PRK06526 transposase; Provisional
Probab=93.26 E-value=0.39 Score=41.10 Aligned_cols=20 Identities=10% Similarity=0.067 Sum_probs=15.4
Q ss_pred cCCCeEEEcCCCCCchHHHH
Q psy4493 37 LKKDAIIIMPTDYPWSDRVR 56 (323)
Q Consensus 37 ~~~~~~~~~~tg~gkt~~~~ 56 (323)
.+.++++..|+|.|||.-..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred cCceEEEEeCCCCchHHHHH
Confidence 45678889999999995433
No 290
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.24 E-value=1.9 Score=34.40 Aligned_cols=123 Identities=12% Similarity=0.151 Sum_probs=60.1
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEE-c-----cchh--hhhhcCeeeeccCCCeeEE
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIII-M-----PTGK--LLKKKKICLMTESSSLKLL 112 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~-~-----pTgs--~l~~~~i~l~~~~~~~~vi 112 (323)
+.+..++|.|||...... ++.++..|..++++ . .+|. .+...++.+......+.
T Consensus 8 i~v~~g~GkGKtt~a~g~----------------a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~-- 69 (173)
T TIGR00708 8 IIVHTGNGKGKTTAAFGM----------------ALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFT-- 69 (173)
T ss_pred EEEECCCCCChHHHHHHH----------------HHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCe--
Confidence 556779999999764433 34455677776544 1 3344 44444454322221111
Q ss_pred EEcccccccchhHH---HHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCCh
Q psy4493 113 YVSPEKLAKSKSFM---TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATT 184 (323)
Q Consensus 113 i~Tp~~l~~~~~~~---~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~ 184 (323)
+.+.+.-.+..... +..+........++||+||+=....+| +-+.-.-+..+.. .|...-+.+|..-.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~g--li~~~~v~~lL~~-rp~~~evVlTGR~~p 141 (173)
T TIGR00708 70 WETQNREADTAIAKAAWQHAKEMLADPELDLVLLDELTYALKYG--YLDVEEVVEALQE-RPGHQHVIITGRGCP 141 (173)
T ss_pred ecCCCcHHHHHHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCC--CcCHHHHHHHHHh-CCCCCEEEEECCCCC
Confidence 11221111111111 122233345689999999999887765 3222122333443 444434455555443
No 291
>PRK14974 cell division protein FtsY; Provisional
Probab=93.15 E-value=1.9 Score=38.48 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=33.6
Q ss_pred CCcceEEEeccccccccCCCchHHHHhHHHHHhh-CCCCCEEEEeecCChhHHHHHHHH
Q psy4493 136 GCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM-FPDVPILGLTATATTKVMLDVQKM 193 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~-~~~~~~i~lSAT~~~~~~~~i~~~ 193 (323)
...++|+||++.++.. -...+..|..+... .|+..++.++||...+..+....+
T Consensus 221 ~~~DvVLIDTaGr~~~----~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 221 RGIDVVLIDTAGRMHT----DANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred CCCCEEEEECCCccCC----cHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH
Confidence 4678999999998753 22333444444332 356678889998876555444443
No 292
>KOG1015|consensus
Probab=93.06 E-value=0.22 Score=49.35 Aligned_cols=43 Identities=14% Similarity=0.023 Sum_probs=26.7
Q ss_pred hhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCC
Q psy4493 134 KAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183 (323)
Q Consensus 134 ~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~ 183 (323)
....-++||.||+|.+-....... ..+..++ ..+.|+||+|+-
T Consensus 818 vdpGPD~vVCDE~HiLKNeksa~S---kam~~ir----tkRRI~LTGTPL 860 (1567)
T KOG1015|consen 818 VDPGPDFVVCDEGHILKNEKSAVS---KAMNSIR----TKRRIILTGTPL 860 (1567)
T ss_pred cCCCCCeEEecchhhhccchHHHH---HHHHHHH----hheeEEeecCch
Confidence 334678999999998865321111 2232233 457888999965
No 293
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.06 E-value=3.1 Score=32.88 Aligned_cols=121 Identities=14% Similarity=0.159 Sum_probs=61.2
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--hhhhcCeeeeccCCCeeEEEEcccc
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--LLKKKKICLMTESSSLKLLYVSPEK 118 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l~~~~i~l~~~~~~~~vii~Tp~~ 118 (323)
.++..|.|.||+..+...++..++-... .. |.+. .... ......+|+.+..|+.
T Consensus 22 ~L~~G~~g~gk~~~a~~~a~~ll~~~~~--------------~~-----~c~~c~~c~~-----~~~~~~~d~~~~~~~~ 77 (162)
T PF13177_consen 22 LLFHGPSGSGKKTLALAFARALLCSNPN--------------ED-----PCGECRSCRR-----IEEGNHPDFIIIKPDK 77 (162)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC-TT-C--------------TT-------SSSHHHHH-----HHTT-CTTEEEEETTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCC--------------CC-----CCCCCHHHHH-----HHhccCcceEEEeccc
Confidence 6788899999998877777664432211 01 2222 1110 1123345566666654
Q ss_pred c---ccchhHHHHHHHH---HhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHH
Q psy4493 119 L---AKSKSFMTKLQKM---YKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQ 191 (323)
Q Consensus 119 l---~~~~~~~~~l~~~---~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~ 191 (323)
- ..-...+...... ......+++|+||||.|... ....|.......|..-++.|+++-...+...+.
T Consensus 78 ~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~------a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~ 150 (162)
T PF13177_consen 78 KKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE------AQNALLKTLEEPPENTYFILITNNPSKILPTIR 150 (162)
T ss_dssp SSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH------HHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH------HHHHHHHHhcCCCCCEEEEEEECChHHChHHHH
Confidence 3 1122333333331 22346789999999988642 224454455565655556666665554444333
No 294
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.05 E-value=1.9 Score=39.35 Aligned_cols=124 Identities=15% Similarity=0.090 Sum_probs=63.7
Q ss_pred CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEE-EEccch---h--hhhhcCeeeeccCCCeeEE-
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAI-IIMPTG---K--LLKKKKICLMTESSSLKLL- 112 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~l-v~~pTg---s--~l~~~~i~l~~~~~~~~vi- 112 (323)
.+.++.|+|.|||..+.+.... ...+++.+. +.+-|. + .+...+ ...+..++
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~----------------L~~~GkkVglI~aDt~RiaAvEQLk~ya-----e~lgipv~v 301 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQ----------------FHGKKKTVGFITTDHSRIGTVQQLQDYV-----KTIGFEVIA 301 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHH----------------HHHcCCcEEEEecCCcchHHHHHHHHHh-----hhcCCcEEe
Confidence 4567889999999776655432 123455554 333232 1 222211 11223344
Q ss_pred EEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhh-CCCCCEEEEeecCChhHHHHHH
Q psy4493 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM-FPDVPILGLTATATTKVMLDVQ 191 (323)
Q Consensus 113 i~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~-~~~~~~i~lSAT~~~~~~~~i~ 191 (323)
..+|..+. +.+.......+.++|+||-+=+... -...+..+..+... .|+..++.+|||........+.
T Consensus 302 ~~d~~~L~------~aL~~lk~~~~~DvVLIDTaGRs~k----d~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~ 371 (436)
T PRK11889 302 VRDEAAMT------RALTYFKEEARVDYILIDTAGKNYR----ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII 371 (436)
T ss_pred cCCHHHHH------HHHHHHHhccCCCEEEEeCccccCc----CHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHH
Confidence 33454443 2343332223589999998875432 12233444333332 2344466699987766555555
Q ss_pred HHh
Q psy4493 192 KML 194 (323)
Q Consensus 192 ~~l 194 (323)
+.+
T Consensus 372 ~~F 374 (436)
T PRK11889 372 TNF 374 (436)
T ss_pred HHh
Confidence 554
No 295
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.05 E-value=0.83 Score=34.51 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=16.8
Q ss_pred CCCeEEEcCCCCCchHHHHHHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLK 60 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~ 60 (323)
++.+++..|+|.|||..+.....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~ 41 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIAN 41 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46688899999999965444443
No 296
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.05 E-value=0.99 Score=45.32 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=15.8
Q ss_pred eEEEcCCCCCchHHHHHHHHh
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~ 61 (323)
.++..|.|.|||.......+.
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~ 60 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARS 60 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578889999999765555444
No 297
>KOG0991|consensus
Probab=93.01 E-value=0.1 Score=43.38 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=20.4
Q ss_pred CCeEEEcCCCCCchHHHHHHHHhcCC
Q psy4493 39 KDAIIIMPTDYPWSDRVRSVLKSKFN 64 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~l~~~~g 64 (323)
.++++..|+|.|||..+......++|
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhC
Confidence 46888999999999887766666554
No 298
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.92 E-value=2.1 Score=38.90 Aligned_cols=124 Identities=19% Similarity=0.199 Sum_probs=67.2
Q ss_pred CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------hhhhcCeeeeccCCCee
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------LLKKKKICLMTESSSLK 110 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------~l~~~~i~l~~~~~~~~ 110 (323)
++-+.++.|||.|||.-+.++...+. ++.++.-+.+.-|-+ .++..+ .--+..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~---------------~~~~~~kVaiITtDtYRIGA~EQLk~Ya-----~im~vp 262 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV---------------MLKKKKKVAIITTDTYRIGAVEQLKTYA-----DIMGVP 262 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH---------------hhccCcceEEEEeccchhhHHHHHHHHH-----HHhCCc
Confidence 55678899999999998887765521 223333233333322 111111 111122
Q ss_pred E-EEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchH--HHHhHHHHHhhCCCC-CEEEEeecCChhH
Q psy4493 111 L-LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRP--DYQYLSILKTMFPDV-PILGLTATATTKV 186 (323)
Q Consensus 111 v-ii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~--~~~~l~~l~~~~~~~-~~i~lSAT~~~~~ 186 (323)
+ ++-+|.-+.. .+. .+.+.++|.||=+-+ +++. ...+|..+.....+. ..+.+|||...++
T Consensus 263 ~~vv~~~~el~~------ai~---~l~~~d~ILVDTaGr------s~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~d 327 (407)
T COG1419 263 LEVVYSPKELAE------AIE---ALRDCDVILVDTAGR------SQYDKEKIEELKELIDVSHSIEVYLVLSATTKYED 327 (407)
T ss_pred eEEecCHHHHHH------HHH---HhhcCCEEEEeCCCC------CccCHHHHHHHHHHHhccccceEEEEEecCcchHH
Confidence 3 3334444432 333 234668999997653 3332 223344443333333 4677999999888
Q ss_pred HHHHHHHhCC
Q psy4493 187 MLDVQKMLQI 196 (323)
Q Consensus 187 ~~~i~~~l~~ 196 (323)
..++...++.
T Consensus 328 lkei~~~f~~ 337 (407)
T COG1419 328 LKEIIKQFSL 337 (407)
T ss_pred HHHHHHHhcc
Confidence 8888777654
No 299
>PRK10536 hypothetical protein; Provisional
Probab=92.91 E-value=0.97 Score=38.53 Aligned_cols=34 Identities=6% Similarity=-0.233 Sum_probs=24.5
Q ss_pred CChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHH
Q psy4493 24 FRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRS 57 (323)
Q Consensus 24 ~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~ 57 (323)
....|...+..+.++.-+++..|.|.|||--...
T Consensus 60 ~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a 93 (262)
T PRK10536 60 RNEAQAHYLKAIESKQLIFATGEAGCGKTWISAA 93 (262)
T ss_pred CCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 3457777777777766677778999999954433
No 300
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=92.90 E-value=1.2 Score=39.68 Aligned_cols=75 Identities=11% Similarity=0.054 Sum_probs=41.1
Q ss_pred CCCeeEEEEccccc---ccchhHHHHHHHH---HhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEe
Q psy4493 106 SSSLKLLYVSPEKL---AKSKSFMTKLQKM---YKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179 (323)
Q Consensus 106 ~~~~~vii~Tp~~l---~~~~~~~~~l~~~---~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lS 179 (323)
...+|+.+.+|+.- ..-...++..+.. ...+..+++|||+||.|... ..+.|-+..+..|...+++|.
T Consensus 71 g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~------AaNaLLKtLEEPp~~t~fiL~ 144 (334)
T PRK07993 71 GTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDA------AANALLKTLEEPPENTWFFLA 144 (334)
T ss_pred CCCCCEEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHH------HHHHHHHHhcCCCCCeEEEEE
Confidence 44567777777631 2122333333332 23457889999999998652 223444444555544555555
Q ss_pred ecCChhH
Q psy4493 180 ATATTKV 186 (323)
Q Consensus 180 AT~~~~~ 186 (323)
+.-+..+
T Consensus 145 t~~~~~l 151 (334)
T PRK07993 145 CREPARL 151 (334)
T ss_pred ECChhhC
Confidence 5544433
No 301
>PRK05973 replicative DNA helicase; Provisional
Probab=92.82 E-value=1.2 Score=37.54 Aligned_cols=91 Identities=4% Similarity=-0.083 Sum_probs=44.9
Q ss_pred CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh------hhhhcCeeeeccCCCeeE
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK------LLKKKKICLMTESSSLKL 111 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs------~l~~~~i~l~~~~~~~~v 111 (323)
+.-.++.+++|.|||......+. ..+.+|+.++++.-.-+ .+.+.|++....... +
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~----------------~~a~~Ge~vlyfSlEes~~~i~~R~~s~g~d~~~~~~~--~ 125 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAV----------------EAMKSGRTGVFFTLEYTEQDVRDRLRALGADRAQFADL--F 125 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHH----------------HHHhcCCeEEEEEEeCCHHHHHHHHHHcCCChHHhccc--e
Confidence 33456677999999965444432 23446777766654333 444555552111111 1
Q ss_pred EEEcccccccchhHHHHHHHHHhhCCcceEEEecccccc
Q psy4493 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCS 150 (323)
Q Consensus 112 ii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~ 150 (323)
.+.+..... ... .++......+.++||||=...+.
T Consensus 126 ~~d~~d~~~-~~~---ii~~l~~~~~~~lVVIDsLq~l~ 160 (237)
T PRK05973 126 EFDTSDAIC-ADY---IIARLASAPRGTLVVIDYLQLLD 160 (237)
T ss_pred EeecCCCCC-HHH---HHHHHHHhhCCCEEEEEcHHHHh
Confidence 121111111 111 12222222367899999887664
No 302
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.77 E-value=1 Score=42.30 Aligned_cols=46 Identities=22% Similarity=0.111 Sum_probs=25.6
Q ss_pred hCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhH
Q psy4493 135 AGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186 (323)
Q Consensus 135 ~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 186 (323)
..+.+++||||+|++... .+..|.......|..-++.|.+|-...+
T Consensus 114 ~~~~KVvIIDEah~Ls~~------A~NaLLK~LEePp~~v~fIlatte~~Kl 159 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNS------AFNALLKTLEEPAPHVKFILATTEVKKI 159 (491)
T ss_pred cCCceEEEEeChHhCCHH------HHHHHHHHHhCCCCCeEEEEEeCChHHH
Confidence 457789999999988652 2233333333334333444555544333
No 303
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.68 E-value=0.84 Score=43.15 Aligned_cols=22 Identities=9% Similarity=0.018 Sum_probs=16.1
Q ss_pred CeEEEcCCCCCchHHHHHHHHh
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
..++..|.|.|||.......+.
T Consensus 45 a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4778889999999665544443
No 304
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=92.66 E-value=0.11 Score=51.47 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=43.9
Q ss_pred HHHHHHhcCCCCCCCcchHHHHHHHhcCC-cEEEEccchh----hhhhcCeeeec-cCCCeeEEEEccccccc
Q psy4493 55 VRSVLKSKFNLTDFRPNQLAAINIALLKK-DAIIIMPTGK----LLKKKKICLMT-ESSSLKLLYVSPEKLAK 121 (323)
Q Consensus 55 ~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~-~~lv~~pTgs----~l~~~~i~l~~-~~~~~~vii~Tp~~l~~ 121 (323)
+........|++ |+|+|.++++.++.|+ ++++.+|||+ .+......+.. ....-.+++++|-+-+.
T Consensus 4 f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa 75 (844)
T TIGR02621 4 FDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVV 75 (844)
T ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHH
Confidence 444555567888 9999999999999998 5777899999 11111112111 12223666788988874
No 305
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.61 E-value=0.42 Score=44.98 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=13.7
Q ss_pred hCCcceEEEeccccccc
Q psy4493 135 AGCLARIAIDEVHCCSS 151 (323)
Q Consensus 135 ~~~v~~vVvDEah~~~~ 151 (323)
.++-+++||||||.+..
T Consensus 117 ~~~~KVvIIDEad~Lt~ 133 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTK 133 (486)
T ss_pred cCCeeEEEEEChhhcCH
Confidence 45678999999998854
No 306
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.57 E-value=2.5 Score=41.35 Aligned_cols=21 Identities=14% Similarity=0.022 Sum_probs=15.7
Q ss_pred eEEEcCCCCCchHHHHHHHHh
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~ 61 (323)
+++..|.|.|||.......+.
T Consensus 41 ~Lf~GP~GvGKTTlAriLAk~ 61 (709)
T PRK08691 41 YLLTGTRGVGKTTIARILAKS 61 (709)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 678889999999665554444
No 307
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.54 E-value=2.1 Score=41.31 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=14.7
Q ss_pred hhCCcceEEEeccccccc
Q psy4493 134 KAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 134 ~~~~v~~vVvDEah~~~~ 151 (323)
...+.+++||||+|++..
T Consensus 115 ~~~~~KVvIIDEah~Lt~ 132 (584)
T PRK14952 115 AQSRYRIFIVDEAHMVTT 132 (584)
T ss_pred hcCCceEEEEECCCcCCH
Confidence 345788999999999865
No 308
>PRK06893 DNA replication initiation factor; Validated
Probab=92.51 E-value=0.57 Score=39.40 Aligned_cols=48 Identities=8% Similarity=0.133 Sum_probs=26.6
Q ss_pred CCcceEEEeccccccccCCCchHHHHh-HHHHHhhCCCCCEEEEeecCChhH
Q psy4493 136 GCLARIAIDEVHCCSSWGHDFRPDYQY-LSILKTMFPDVPILGLTATATTKV 186 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~~~~~~r~~~~~-l~~l~~~~~~~~~i~lSAT~~~~~ 186 (323)
.+.+++|+||+|.+.... .....+.. +..+.. .+.+++++|++.++..
T Consensus 90 ~~~dlLilDDi~~~~~~~-~~~~~l~~l~n~~~~--~~~~illits~~~p~~ 138 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNE-EWELAIFDLFNRIKE--QGKTLLLISADCSPHA 138 (229)
T ss_pred ccCCEEEEeChhhhcCCh-HHHHHHHHHHHHHHH--cCCcEEEEeCCCChHH
Confidence 367899999999875321 11111111 222221 2456778888876653
No 309
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=92.42 E-value=1.3 Score=39.17 Aligned_cols=14 Identities=36% Similarity=0.242 Sum_probs=11.9
Q ss_pred CCcceEEEeccccc
Q psy4493 136 GCLARIAIDEVHCC 149 (323)
Q Consensus 136 ~~v~~vVvDEah~~ 149 (323)
...+++||||+|.+
T Consensus 99 ~~~~vliiDe~d~l 112 (316)
T PHA02544 99 GGGKVIIIDEFDRL 112 (316)
T ss_pred CCCeEEEEECcccc
Confidence 35679999999988
No 310
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.41 E-value=0.62 Score=45.22 Aligned_cols=43 Identities=26% Similarity=0.208 Sum_probs=26.2
Q ss_pred hhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecC
Q psy4493 134 KAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182 (323)
Q Consensus 134 ~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~ 182 (323)
+...-+++||||+|.+... ....|.......|...++.|++|-
T Consensus 118 ~~~~~KVvIIdea~~Ls~~------a~naLLK~LEepp~~tifIL~tt~ 160 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQA------AFNAFLKTLEEPPSYAIFILATTE 160 (614)
T ss_pred ccCCcEEEEEECcccCCHH------HHHHHHHHHhCCCCCeEEEEEeCC
Confidence 4457789999999998652 223343444444444555566653
No 311
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=92.34 E-value=0.72 Score=45.29 Aligned_cols=18 Identities=33% Similarity=0.276 Sum_probs=14.5
Q ss_pred hhCCcceEEEeccccccc
Q psy4493 134 KAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 134 ~~~~v~~vVvDEah~~~~ 151 (323)
..++-+++||||||.+..
T Consensus 115 ~~g~~KV~IIDEa~~LT~ 132 (725)
T PRK07133 115 TQSKYKIYIIDEVHMLSK 132 (725)
T ss_pred hcCCCEEEEEEChhhCCH
Confidence 445778999999998864
No 312
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=92.30 E-value=2.5 Score=32.64 Aligned_cols=19 Identities=21% Similarity=0.139 Sum_probs=14.9
Q ss_pred HhhCCcceEEEeccccccc
Q psy4493 133 YKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 133 ~~~~~v~~vVvDEah~~~~ 151 (323)
....+.+++|+||++.+.+
T Consensus 81 ~~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 81 RERGGDDLIILDELTRLVR 99 (165)
T ss_pred HhCCCCEEEEEEcHHHHHH
Confidence 3445888999999997754
No 313
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=92.25 E-value=0.54 Score=49.09 Aligned_cols=78 Identities=14% Similarity=0.112 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchhhhhhcCeee--eccCCCeeEEEEcccccccchhHHHHHH
Q psy4493 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICL--MTESSSLKLLYVSPEKLAKSKSFMTKLQ 130 (323)
Q Consensus 53 ~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs~l~~~~i~l--~~~~~~~~vii~Tp~~l~~~~~~~~~l~ 130 (323)
..+...+++..|+ .|+++|..+++.++.|+++++++|||+.=...++.+ ........++|.+|-+.+. .+..+.++
T Consensus 65 ~~f~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa-~Qi~~~l~ 142 (1171)
T TIGR01054 65 KEFEEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLV-IQVAEKIS 142 (1171)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHH-HHHHHHHH
Confidence 3344555554555 699999999999999999999999999111111110 1112246799999998884 34444455
Q ss_pred HH
Q psy4493 131 KM 132 (323)
Q Consensus 131 ~~ 132 (323)
..
T Consensus 143 ~l 144 (1171)
T TIGR01054 143 SL 144 (1171)
T ss_pred HH
Confidence 43
No 314
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.18 E-value=2 Score=39.48 Aligned_cols=19 Identities=37% Similarity=0.317 Sum_probs=15.0
Q ss_pred HhhCCcceEEEeccccccc
Q psy4493 133 YKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 133 ~~~~~v~~vVvDEah~~~~ 151 (323)
.+....+++||||+|.+..
T Consensus 123 p~~~~~kvvIIdea~~l~~ 141 (397)
T PRK14955 123 PQKGRYRVYIIDEVHMLSI 141 (397)
T ss_pred hhcCCeEEEEEeChhhCCH
Confidence 3455778999999998864
No 315
>PRK04195 replication factor C large subunit; Provisional
Probab=92.09 E-value=2.5 Score=39.90 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=17.4
Q ss_pred CCCeEEEcCCCCCchHHHHHHHHh
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
.+.+++..|+|.|||..+......
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456888999999999665444443
No 316
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.08 E-value=1.9 Score=40.50 Aligned_cols=20 Identities=20% Similarity=0.091 Sum_probs=14.6
Q ss_pred eEEEcCCCCCchHHHHHHHH
Q psy4493 41 AIIIMPTDYPWSDRVRSVLK 60 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~ 60 (323)
.++..|+|.|||..+.....
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57889999999965444433
No 317
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=92.05 E-value=0.1 Score=41.82 Aligned_cols=46 Identities=13% Similarity=-0.021 Sum_probs=28.4
Q ss_pred eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccc
Q psy4493 103 MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 103 ~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~ 151 (323)
.......+|+|++-..|++ +.....+. ....+-.+|||||||.+.+
T Consensus 114 r~~~~~adivi~~y~yl~~-~~~~~~~~--~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFD-PSIRKSLF--GIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHS-HHHHHHHC--T--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhh-HHHHhhhc--cccccCcEEEEecccchHH
Confidence 4445568999999888774 33322221 0122446899999999876
No 318
>PRK08084 DNA replication initiation factor; Provisional
Probab=92.01 E-value=1 Score=38.05 Aligned_cols=16 Identities=6% Similarity=-0.240 Sum_probs=13.1
Q ss_pred CCeEEEcCCCCCchHH
Q psy4493 39 KDAIIIMPTDYPWSDR 54 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~ 54 (323)
..+++..|+|.|||.-
T Consensus 46 ~~l~l~Gp~G~GKThL 61 (235)
T PRK08084 46 GYIYLWSREGAGRSHL 61 (235)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4578888999999954
No 319
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=91.99 E-value=0.78 Score=34.32 Aligned_cols=15 Identities=20% Similarity=0.054 Sum_probs=12.8
Q ss_pred cceEEEecccccccc
Q psy4493 138 LARIAIDEVHCCSSW 152 (323)
Q Consensus 138 v~~vVvDEah~~~~~ 152 (323)
-.++++||+|.+...
T Consensus 59 ~~vl~iDe~d~l~~~ 73 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPK 73 (132)
T ss_dssp SEEEEEETGGGTSHH
T ss_pred ceeeeeccchhcccc
Confidence 579999999999764
No 320
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=91.99 E-value=0.52 Score=42.41 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=15.0
Q ss_pred eEEEcCCCCCchHHHHHHHHh
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~ 61 (323)
.++..|+|+|||..+....+.
T Consensus 39 ~Ll~G~~G~GKt~~a~~la~~ 59 (355)
T TIGR02397 39 YLFSGPRGTGKTSIARIFAKA 59 (355)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 577889999999655444433
No 321
>KOG0989|consensus
Probab=91.96 E-value=0.66 Score=40.27 Aligned_cols=25 Identities=4% Similarity=-0.063 Sum_probs=19.3
Q ss_pred CeEEEcCCCCCchHHHHHHHHhcCC
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKSKFN 64 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~~~g 64 (323)
+.+...|.|.|||..+....+..|+
T Consensus 59 ~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 59 HYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred eEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 3667889999999887777766555
No 322
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=91.91 E-value=1 Score=44.90 Aligned_cols=119 Identities=16% Similarity=0.056 Sum_probs=63.5
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccc
Q psy4493 12 RSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT 91 (323)
Q Consensus 12 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pT 91 (323)
++..++.+|... .+.|.-.-=... .--+..|.||-||| +...+.. .-..+.|+.|-|+..-
T Consensus 68 REA~~R~lG~r~-ydVQliGglvLh--~G~IAEMkTGEGKT--LvAtLpa--------------yLnAL~GkgVhVVTvN 128 (925)
T PRK12903 68 REATKRVLGKRP-YDVQIIGGIILD--LGSVAEMKTGEGKT--ITSIAPV--------------YLNALTGKGVIVSTVN 128 (925)
T ss_pred HHHHHHHhCCCc-CchHHHHHHHHh--cCCeeeecCCCCcc--HHHHHHH--------------HHHHhcCCceEEEecc
Confidence 444455555544 445655332222 33478899999999 3333322 1123577777555333
Q ss_pred hh-----------hhhhcCeee-----------eccCCCeeEEEEcccccccchhHHHHHH---HHHhhCCcceEEEecc
Q psy4493 92 GK-----------LLKKKKICL-----------MTESSSLKLLYVSPEKLAKSKSFMTKLQ---KMYKAGCLARIAIDEV 146 (323)
Q Consensus 92 gs-----------~l~~~~i~l-----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~---~~~~~~~v~~vVvDEa 146 (323)
.. ....+|+.+ ....=.++|+++|..-+-. .-+++.+. .......+.+.||||+
T Consensus 129 dYLA~RDae~mg~vy~fLGLsvG~i~~~~~~~~rr~aY~~DItYgTn~E~gF-DYLRDnm~~~~~~~vqR~~~faIVDEV 207 (925)
T PRK12903 129 EYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKREAYACDITYSVHSELGF-DYLRDNMVSSKEEKVQRGLNFCLIDEV 207 (925)
T ss_pred hhhhhhhHHHHHHHHHHhCCceeeeCCCCChHHHHHhccCCCeeecCcccch-hhhhhcccccHHHhcCcccceeeeccc
Confidence 22 333445541 1122357999999887642 01111110 1123357889999999
Q ss_pred cccc
Q psy4493 147 HCCS 150 (323)
Q Consensus 147 h~~~ 150 (323)
|.++
T Consensus 208 DSIL 211 (925)
T PRK12903 208 DSIL 211 (925)
T ss_pred hhee
Confidence 9775
No 323
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.84 E-value=0.76 Score=44.15 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=14.0
Q ss_pred hCCcceEEEeccccccc
Q psy4493 135 AGCLARIAIDEVHCCSS 151 (323)
Q Consensus 135 ~~~v~~vVvDEah~~~~ 151 (323)
..+-+++||||+|++..
T Consensus 117 ~~~~kViIIDE~~~Lt~ 133 (559)
T PRK05563 117 EAKYKVYIIDEVHMLST 133 (559)
T ss_pred cCCeEEEEEECcccCCH
Confidence 45678999999998864
No 324
>KOG1133|consensus
Probab=91.79 E-value=0.81 Score=43.97 Aligned_cols=78 Identities=15% Similarity=0.180 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHh---hcCCCcEEEEeCChhHHHHHHHHHHhCCC-------eEEeecCCCCCCc--------------
Q psy4493 222 QKDCLDELADLMSR---RFRNQSGIIYTTSIKECEDLREELRNRGL-------RVSAYHAKLESNV-------------- 277 (323)
Q Consensus 222 ~~~~~~~l~~~l~~---~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-------~v~~~h~~~~~~~-------------- 277 (323)
..+.+..|...+.+ ..+ +-+++|.+|-.--..+.+.+...|+ +-.++-..-+.++
T Consensus 610 s~~~l~~l~~~~~nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~G 688 (821)
T KOG1133|consen 610 SPEMIKDLGSSISNLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRG 688 (821)
T ss_pred ChHHHHHHHHHHHHHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCcccHHHHHHHHHHHhhcCCC
Confidence 33444444444432 323 6789999998877777777775543 1222222222121
Q ss_pred -------ceeeecccccCC--ccEEEEccCCC
Q psy4493 278 -------SIAFGLGIDKPN--VRFVIHHCLSK 300 (323)
Q Consensus 278 -------T~~~~~Gid~~~--v~~Vi~~~~p~ 300 (323)
-.-+++||||.| +++||..|+|.
T Consensus 689 aiLlaVVGGKlSEGINF~D~LgRaVvvVGlPy 720 (821)
T KOG1133|consen 689 AILLAVVGGKLSEGINFSDDLGRAVVVVGLPY 720 (821)
T ss_pred eEEEEEeccccccccccccccccEEEEeecCC
Confidence 445689999987 88999999885
No 325
>PTZ00293 thymidine kinase; Provisional
Probab=91.77 E-value=1.5 Score=36.29 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=27.5
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccch
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG 92 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTg 92 (323)
-++..|.++|||+.++..+.++ ...++.++++-|..
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y----------------~~ag~kv~~~kp~~ 42 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRF----------------TYSEKKCVVIKYSK 42 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHH----------------HHcCCceEEEEecc
Confidence 4567799999999888877662 34678888888853
No 326
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.74 E-value=1 Score=44.78 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=25.7
Q ss_pred CcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChh
Q psy4493 137 CLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTK 185 (323)
Q Consensus 137 ~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 185 (323)
.-.+++|||+|.+...|............++.......+.++.||-.++
T Consensus 278 ~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E 326 (758)
T PRK11034 278 TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQE 326 (758)
T ss_pred CCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHH
Confidence 3458999999999754421111111111233333445566666775543
No 327
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=91.73 E-value=0.41 Score=44.98 Aligned_cols=83 Identities=16% Similarity=0.272 Sum_probs=61.8
Q ss_pred CCCchHHHHHHHHhcCCCCCCCcchHHHHHH-HhcCCcEEEEccchh---hhhh-cCeeeeccCCCeeEEEEcccccccc
Q psy4493 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINI-ALLKKDAIIIMPTGK---LLKK-KKICLMTESSSLKLLYVSPEKLAKS 122 (323)
Q Consensus 48 g~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~-~~~~~~~lv~~pTgs---~l~~-~~i~l~~~~~~~~vii~Tp~~l~~~ 122 (323)
....++.+...++. .|++.+.|+|..++.+ +++|+|.+|+++|+| .+.. .|++ ....+.-+.++.+|=..+.+
T Consensus 198 eLdipe~fk~~lk~-~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~-~~l~~g~KmlfLvPLVALAN 275 (830)
T COG1202 198 ELDIPEKFKRMLKR-EGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIP-RLLSGGKKMLFLVPLVALAN 275 (830)
T ss_pred ccCCcHHHHHHHHh-cCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcH-HHHhCCCeEEEEehhHHhhc
Confidence 44556777777777 8999999999999977 789999999999999 1221 3444 23344568999999988877
Q ss_pred hhHHHHHHHH
Q psy4493 123 KSFMTKLQKM 132 (323)
Q Consensus 123 ~~~~~~l~~~ 132 (323)
+.+.++-++.
T Consensus 276 QKy~dF~~rY 285 (830)
T COG1202 276 QKYEDFKERY 285 (830)
T ss_pred chHHHHHHHh
Confidence 7766665543
No 328
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=91.65 E-value=2.7 Score=33.05 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=29.6
Q ss_pred HhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhH
Q psy4493 133 YKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186 (323)
Q Consensus 133 ~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 186 (323)
......+++|+||+=.....|---...+ +..+....++.-+|+.+-.+++++
T Consensus 91 ~~~~~~dLlVLDEi~~a~~~gli~~~~v--~~ll~~rp~~~evIlTGr~~p~~l 142 (159)
T cd00561 91 IASGEYDLVILDEINYALGYGLLDVEEV--VDLLKAKPEDLELVLTGRNAPKEL 142 (159)
T ss_pred HhcCCCCEEEEechHhHhhCCCCCHHHH--HHHHHcCCCCCEEEEECCCCCHHH
Confidence 3456899999999998877552222222 333444433445554444455444
No 329
>KOG0347|consensus
Probab=91.61 E-value=0.32 Score=45.38 Aligned_cols=50 Identities=12% Similarity=-0.033 Sum_probs=40.3
Q ss_pred CCCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcC-CCeEEEcCCCCCchHH
Q psy4493 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK-KDAIIIMPTDYPWSDR 54 (323)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~-~~~~~~~~tg~gkt~~ 54 (323)
+|+.+.++...|. ..|+..+.+.|...+.++..+ .|++-.+-||+|||-+
T Consensus 185 ~l~lp~~iL~aL~-~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLA 235 (731)
T KOG0347|consen 185 NLFLPMEILRALS-NLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLA 235 (731)
T ss_pred cCCCCHHHHHHHH-hcCCCCCccchhhcccHhhccchhcccccccCCCceee
Confidence 4555666666654 468999999999999999887 7888899999999954
No 330
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=91.41 E-value=1.3 Score=41.24 Aligned_cols=16 Identities=13% Similarity=0.279 Sum_probs=13.6
Q ss_pred CCcceEEEeccccccc
Q psy4493 136 GCLARIAIDEVHCCSS 151 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~ 151 (323)
.+.+++++||+|.+..
T Consensus 201 ~~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 201 RNVDALFIEDIEVFSG 216 (445)
T ss_pred ccCCEEEEcchhhhcC
Confidence 4788999999998864
No 331
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.33 E-value=1 Score=45.69 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=16.7
Q ss_pred CCCeEEEcCCCCCchHHHHHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l 59 (323)
+.+.+++.|+|.|||..+....
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~la 215 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEGLA 215 (852)
T ss_pred CCceEEEcCCCCCHHHHHHHHH
Confidence 4568889999999997654443
No 332
>KOG0354|consensus
Probab=91.24 E-value=0.26 Score=47.88 Aligned_cols=58 Identities=22% Similarity=0.308 Sum_probs=40.3
Q ss_pred CCCCCcchHHHHHHHhcCCcEEEEccchh--hhhhcCee--eeccCCCeeEEEEcccccccch
Q psy4493 65 LTDFRPNQLAAINIALLKKDAIIIMPTGK--LLKKKKIC--LMTESSSLKLLYVSPEKLAKSK 123 (323)
Q Consensus 65 ~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l~~~~i~--l~~~~~~~~vii~Tp~~l~~~~ 123 (323)
.-.+|.+|.+.+...+ |+|++|++|||+ ..-+.-+- ......+.+|++++|.+-+-.+
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~Q 121 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQ 121 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHH
Confidence 4477899999998888 999999999999 11111111 1223344799999999776433
No 333
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.18 E-value=1.6 Score=41.71 Aligned_cols=18 Identities=39% Similarity=0.401 Sum_probs=14.6
Q ss_pred hhCCcceEEEeccccccc
Q psy4493 134 KAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 134 ~~~~v~~vVvDEah~~~~ 151 (323)
..++.+++||||+|.+..
T Consensus 116 ~~g~~kViIIDEa~~ls~ 133 (546)
T PRK14957 116 SQGRYKVYLIDEVHMLSK 133 (546)
T ss_pred hcCCcEEEEEechhhccH
Confidence 445778999999999865
No 334
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=91.13 E-value=1.8 Score=40.51 Aligned_cols=15 Identities=13% Similarity=0.359 Sum_probs=12.8
Q ss_pred CcceEEEeccccccc
Q psy4493 137 CLARIAIDEVHCCSS 151 (323)
Q Consensus 137 ~v~~vVvDEah~~~~ 151 (323)
+.+++++||+|.+..
T Consensus 211 ~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 211 SVDVLLIDDIQFLAG 225 (450)
T ss_pred cCCEEEEehhhhhcC
Confidence 688999999998753
No 335
>KOG4284|consensus
Probab=91.10 E-value=0.51 Score=45.01 Aligned_cols=68 Identities=22% Similarity=0.181 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh----hhhhcCee-eeccCCCeeEEEEccccccc
Q psy4493 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----LLKKKKIC-LMTESSSLKLLYVSPEKLAK 121 (323)
Q Consensus 53 ~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs----~l~~~~i~-l~~~~~~~~vii~Tp~~l~~ 121 (323)
..+...|++ -+|..|+++|..|||..+.+-|.||.+..|+ .+.-..+. |......++.+|.||-+-+.
T Consensus 34 r~vl~glrr-n~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREia 106 (980)
T KOG4284|consen 34 REVLLGLRR-NAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIA 106 (980)
T ss_pred HHHHHHHHh-hcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhh
Confidence 344455555 4899999999999999999999999999998 11111111 34456678899999988763
No 336
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=91.10 E-value=2.2 Score=41.30 Aligned_cols=22 Identities=5% Similarity=-0.009 Sum_probs=16.3
Q ss_pred CeEEEcCCCCCchHHHHHHHHh
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
..++..|.|.|||.......+.
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lAk~ 69 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILARA 69 (598)
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 4778889999999765555444
No 337
>PRK08116 hypothetical protein; Validated
Probab=91.01 E-value=9.6 Score=32.90 Aligned_cols=15 Identities=0% Similarity=-0.236 Sum_probs=12.0
Q ss_pred CeEEEcCCCCCchHH
Q psy4493 40 DAIIIMPTDYPWSDR 54 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~ 54 (323)
.+++..++|.|||.-
T Consensus 116 gl~l~G~~GtGKThL 130 (268)
T PRK08116 116 GLLLWGSVGTGKTYL 130 (268)
T ss_pred eEEEECCCCCCHHHH
Confidence 378888999999843
No 338
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=91.01 E-value=3.6 Score=38.81 Aligned_cols=38 Identities=18% Similarity=0.140 Sum_probs=22.6
Q ss_pred CcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEe
Q psy4493 137 CLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179 (323)
Q Consensus 137 ~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lS 179 (323)
+..++|+||+|...+ +..+..+..-....++.+++.+|
T Consensus 123 ~~~~~i~DE~h~~~~-----~~~~~~l~~g~~~r~~pl~~~IS 160 (477)
T PF03354_consen 123 NPSLAIFDELHAHKD-----DELYDALESGMGARPNPLIIIIS 160 (477)
T ss_pred CCceEEEeCCCCCCC-----HHHHHHHHhhhccCCCceEEEEe
Confidence 678999999998754 22334443333334466555553
No 339
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=90.95 E-value=0.29 Score=42.97 Aligned_cols=55 Identities=5% Similarity=-0.013 Sum_probs=37.8
Q ss_pred CChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHH-hcCCcEEEEccchh
Q psy4493 24 FRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIA-LLKKDAIIIMPTGK 93 (323)
Q Consensus 24 ~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~-~~~~~~lv~~pTgs 93 (323)
+.+.|.++++. ...+++|.++.|+|||..+..-+..+ +..- ....+++++..|..
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~l-------------l~~~~~~~~~Il~lTft~~ 56 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYL-------------LYEGGVPPERILVLTFTNA 56 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHH-------------HHTSSSTGGGEEEEESSHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHh-------------hccccCChHHheecccCHH
Confidence 45788888886 57889999999999998876655432 1101 23466999999988
No 340
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=90.94 E-value=2 Score=40.06 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=12.7
Q ss_pred CcceEEEeccccccc
Q psy4493 137 CLARIAIDEVHCCSS 151 (323)
Q Consensus 137 ~v~~vVvDEah~~~~ 151 (323)
+.+++++||+|.+..
T Consensus 194 ~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 194 KVDVLLIDDVQFLIG 208 (440)
T ss_pred cCCEEEEechhhhcC
Confidence 588999999998754
No 341
>PRK08181 transposase; Validated
Probab=90.80 E-value=3.2 Score=35.80 Aligned_cols=17 Identities=12% Similarity=0.038 Sum_probs=13.7
Q ss_pred cCCCeEEEcCCCCCchH
Q psy4493 37 LKKDAIIIMPTDYPWSD 53 (323)
Q Consensus 37 ~~~~~~~~~~tg~gkt~ 53 (323)
.+.++++..|+|.|||-
T Consensus 105 ~~~nlll~Gp~GtGKTH 121 (269)
T PRK08181 105 KGANLLLFGPPGGGKSH 121 (269)
T ss_pred cCceEEEEecCCCcHHH
Confidence 45678888899999983
No 342
>PRK06835 DNA replication protein DnaC; Validated
Probab=90.72 E-value=3.3 Score=36.88 Aligned_cols=16 Identities=6% Similarity=-0.116 Sum_probs=13.4
Q ss_pred CCCeEEEcCCCCCchH
Q psy4493 38 KKDAIIIMPTDYPWSD 53 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~ 53 (323)
+..+++..|+|.|||-
T Consensus 183 ~~~Lll~G~~GtGKTh 198 (329)
T PRK06835 183 NENLLFYGNTGTGKTF 198 (329)
T ss_pred CCcEEEECCCCCcHHH
Confidence 4678888999999994
No 343
>KOG0947|consensus
Probab=90.64 E-value=0.22 Score=49.32 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=49.3
Q ss_pred CCcchHHHHHHHhcCCcEEEEccchh---hhhhcCeeeeccCCCeeEEEEcccccccchhHHHHHHHH
Q psy4493 68 FRPNQLAAINIALLKKDAIIIMPTGK---LLKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKM 132 (323)
Q Consensus 68 ~~~~Q~~~i~~~~~~~~~lv~~pTgs---~l~~~~i~l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~ 132 (323)
+-.+|++||-++.+|.+++|.|||.+ .+.+..+.+. ..-..+.+++||-+.+.+++|++.-+..
T Consensus 298 lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala-q~h~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 298 LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA-QKHMTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH-HhhccceEecchhhhhccchHHHHHHhc
Confidence 55799999999999999999999998 4444444422 2224578999999999888888876653
No 344
>PRK10689 transcription-repair coupling factor; Provisional
Probab=90.57 E-value=0.47 Score=49.39 Aligned_cols=67 Identities=16% Similarity=0.230 Sum_probs=45.6
Q ss_pred HHHHHHHhcCCCCCCCcchHHHHHHHhcC------CcEEEEccchh--hhhhcCeeeeccCCCeeEEEEccccccc
Q psy4493 54 RVRSVLKSKFNLTDFRPNQLAAINIALLK------KDAIIIMPTGK--LLKKKKICLMTESSSLKLLYVSPEKLAK 121 (323)
Q Consensus 54 ~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~------~~~lv~~pTgs--~l~~~~i~l~~~~~~~~vii~Tp~~l~~ 121 (323)
.......+.|+| .|++.|.+||+.++++ +++++++|||+ .....-...........++|.+|.+.+.
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA 662 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLA 662 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHH
Confidence 344445555888 6999999999999886 78999999999 1100000000112356799999999884
No 345
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.55 E-value=9 Score=35.50 Aligned_cols=56 Identities=21% Similarity=0.055 Sum_probs=33.8
Q ss_pred CCcceEEEeccccccccCCCchHHHHhHHHHHh-h-CCCCCEEEEeecCChhHHHHHHHHhC
Q psy4493 136 GCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT-M-FPDVPILGLTATATTKVMLDVQKMLQ 195 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~-~-~~~~~~i~lSAT~~~~~~~~i~~~l~ 195 (323)
.+.++|+||.+-.... -......+..+.. . .+....+.+|||........+...+.
T Consensus 298 ~~~DlVlIDt~G~~~~----d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~ 355 (424)
T PRK05703 298 RDCDVILIDTAGRSQR----DKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS 355 (424)
T ss_pred CCCCEEEEeCCCCCCC----CHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC
Confidence 4689999999875422 1122233444433 1 12344788999998877666666654
No 346
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.54 E-value=3.3 Score=39.99 Aligned_cols=45 Identities=20% Similarity=0.093 Sum_probs=25.1
Q ss_pred hhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCCh
Q psy4493 134 KAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATT 184 (323)
Q Consensus 134 ~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~ 184 (323)
...+.+++||||+|++... ....|.......+..-++.|.+|-+.
T Consensus 116 ~~~~~KVvIIdev~~Lt~~------a~naLLk~LEepp~~~~fIl~t~~~~ 160 (576)
T PRK14965 116 SRSRYKIFIIDEVHMLSTN------AFNALLKTLEEPPPHVKFIFATTEPH 160 (576)
T ss_pred ccCCceEEEEEChhhCCHH------HHHHHHHHHHcCCCCeEEEEEeCChh
Confidence 3457789999999988652 22334334444443334444445333
No 347
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.46 E-value=4.5 Score=36.66 Aligned_cols=55 Identities=16% Similarity=0.091 Sum_probs=31.1
Q ss_pred CCcceEEEeccccccccCCCchHHHHhHHHHHhhCC-CCCEEEEeecCChhHHHHHHHHh
Q psy4493 136 GCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP-DVPILGLTATATTKVMLDVQKML 194 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l 194 (323)
.+.++++||++-..... ......+..+..... ...++.+|||...+...++.+.+
T Consensus 214 ~~~DlVLIDTaG~~~~d----~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRD----RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred cCCCEEEEcCCCCCccc----HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 46789999999644211 111122333332222 23478899999887766554443
No 348
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=90.34 E-value=3.2 Score=31.94 Aligned_cols=52 Identities=23% Similarity=0.233 Sum_probs=32.3
Q ss_pred EEEEeCChh--HHHHHHHHHHhCCCeEEeecCCCCCCcceeeecccccCC--ccEEEEccCCC
Q psy4493 242 GIIYTTSIK--ECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPN--VRFVIHHCLSK 300 (323)
Q Consensus 242 ~iVF~~s~~--~~~~l~~~L~~~~~~v~~~h~~~~~~~T~~~~~Gid~~~--v~~Vi~~~~p~ 300 (323)
..||+.+.. +...+.+.+.+.+-. +++.| +..+++|+|+|+ ++.||..++|.
T Consensus 24 ~~i~~e~~~~~~~~~~l~~f~~~~~~-~iL~~------~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 24 LLLLVQGEDGKETGKLLEKYVEACEN-AILLA------TARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CeEEEeCCChhHHHHHHHHHHHcCCC-EEEEE------ccceecceecCCCCeeEEEEEecCC
Confidence 357776544 346666666654321 23333 333799999997 57899988774
No 349
>PRK13342 recombination factor protein RarA; Reviewed
Probab=90.21 E-value=2.1 Score=39.59 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=13.5
Q ss_pred CeEEEcCCCCCchHHHH
Q psy4493 40 DAIIIMPTDYPWSDRVR 56 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~ 56 (323)
++++..|+|.|||..+.
T Consensus 38 ~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 38 SMILWGPPGTGKTTLAR 54 (413)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57889999999995433
No 350
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=90.18 E-value=6.2 Score=35.53 Aligned_cols=21 Identities=5% Similarity=-0.077 Sum_probs=16.5
Q ss_pred eEEEcCCCCCchHHHHHHHHh
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~ 61 (323)
.++..|.|.||+.......+.
T Consensus 48 ~L~~G~~G~GKttlA~~lA~~ 68 (351)
T PRK09112 48 LLFEGPEGIGKATLAFHLANH 68 (351)
T ss_pred EeeECCCCCCHHHHHHHHHHH
Confidence 677889999999776665555
No 351
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=90.17 E-value=3.6 Score=35.29 Aligned_cols=17 Identities=6% Similarity=-0.214 Sum_probs=13.5
Q ss_pred CCeEEEcCCCCCchHHH
Q psy4493 39 KDAIIIMPTDYPWSDRV 55 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~ 55 (323)
.++++..|+|.|||..+
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 35788999999999543
No 352
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=90.11 E-value=1.6 Score=40.13 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=12.7
Q ss_pred CcceEEEeccccccc
Q psy4493 137 CLARIAIDEVHCCSS 151 (323)
Q Consensus 137 ~v~~vVvDEah~~~~ 151 (323)
+.+++++||+|.+..
T Consensus 199 ~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 199 SVDLLLIDDIQFLAG 213 (405)
T ss_pred hCCEEEEehhhhhcC
Confidence 578999999998754
No 353
>PRK10865 protein disaggregation chaperone; Provisional
Probab=90.03 E-value=1.7 Score=44.11 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=16.4
Q ss_pred CCCeEEEcCCCCCchHHHHHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l 59 (323)
+.+.+++.|+|.|||..+....
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~la 220 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGLA 220 (857)
T ss_pred cCceEEECCCCCCHHHHHHHHH
Confidence 3468899999999996654443
No 354
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=89.92 E-value=2.8 Score=35.01 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=51.8
Q ss_pred CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhc-CCcEEEEccchh------hhhhcCeee--eccCCC
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL-KKDAIIIMPTGK------LLKKKKICL--MTESSS 108 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~-~~~~lv~~pTgs------~l~~~~i~l--~~~~~~ 108 (323)
+...++..++|.|||.-..+.+ ...+.+ |..+++++-.-+ .+.+.|.++ ....+.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l----------------~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~ 82 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFL----------------YNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGK 82 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH----------------HHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTS
T ss_pred CcEEEEEeCCCCCcHHHHHHHH----------------HHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCC
Confidence 4456777799999995533333 344556 777766664433 555667664 222334
Q ss_pred eeEEEEcccccc----cchhHHHHHHHHHhhCCcceEEEeccccc
Q psy4493 109 LKLLYVSPEKLA----KSKSFMTKLQKMYKAGCLARIAIDEVHCC 149 (323)
Q Consensus 109 ~~vii~Tp~~l~----~~~~~~~~l~~~~~~~~v~~vVvDEah~~ 149 (323)
..++=+.+.... ....+...+.......+.+.+|||-...+
T Consensus 83 l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 83 LKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp EEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred EEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 444444444321 11233334444333335689999999888
No 355
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=89.79 E-value=1.2 Score=31.09 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=32.4
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~ 274 (323)
++.++++||++-..+...+..|+..|+++..+.|++.
T Consensus 50 ~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 50 KDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 5678999999888888999999999998999999875
No 356
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.77 E-value=2.7 Score=40.08 Aligned_cols=17 Identities=41% Similarity=0.462 Sum_probs=13.9
Q ss_pred hCCcceEEEeccccccc
Q psy4493 135 AGCLARIAIDEVHCCSS 151 (323)
Q Consensus 135 ~~~v~~vVvDEah~~~~ 151 (323)
.++.+++||||+|.+..
T Consensus 117 ~~~~kVvIIDEad~ls~ 133 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSK 133 (527)
T ss_pred cCCceEEEEcCcccCCH
Confidence 34678999999998865
No 357
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=89.75 E-value=0.5 Score=47.35 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=52.2
Q ss_pred CCCCChhHHHHH----HHHh-cCCCeEEEcCCCCCchHHHHHHHHh----cCCCCCC---CcchHHHHHHHhcCCcEEEE
Q psy4493 21 LTDFRPNQLAAI----NIAL-LKKDAIIIMPTDYPWSDRVRSVLKS----KFNLTDF---RPNQLAAINIALLKKDAIII 88 (323)
Q Consensus 21 ~~~~~~~Q~~~~----~~~~-~~~~~~~~~~tg~gkt~~~~~~l~~----~~g~~~~---~~~Q~~~i~~~~~~~~~lv~ 88 (323)
...+.+.|...- ...+ .+..+--..|..++....+...+.. ..|+..| +|+|.++++.+..++++++.
T Consensus 34 ~~~lsd~eL~~kt~~~k~~l~~~~~ld~~l~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAe 113 (970)
T PRK12899 34 FSSLSDDELRNKTAELKQRYQDGESLDKLLPEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITE 113 (970)
T ss_pred HHcCCHHHHHHHHHHHHHHHHcCCchHHHHHHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEE
Confidence 466666555532 2222 2322223457888888777776663 4688888 99999999999999999999
Q ss_pred ccchh
Q psy4493 89 MPTGK 93 (323)
Q Consensus 89 ~pTgs 93 (323)
++||+
T Consensus 114 aqTGe 118 (970)
T PRK12899 114 MQTGE 118 (970)
T ss_pred eCCCC
Confidence 99999
No 358
>KOG1001|consensus
Probab=89.57 E-value=0.94 Score=44.25 Aligned_cols=132 Identities=14% Similarity=0.101 Sum_probs=0.0
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh------------------hhhhcC-ee
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK------------------LLKKKK-IC 101 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs------------------~l~~~~-i~ 101 (323)
.++.---|.|||......+.. .......+. .-..++..++++|+.- ..--.| ..
T Consensus 155 gIladd~glgkt~~ti~l~l~-~~~~~~~~~------~~~~~kttLivcp~s~~~qW~~elek~~~~~~l~v~v~~gr~k 227 (674)
T KOG1001|consen 155 GILADDMGLGKTVKTIALILK-QKLKSKEED------RQKEFKTTLIVCPTSLLTQWKTELEKVTEEDKLSIYVYHGRTK 227 (674)
T ss_pred ceEeeccccchHHHHHHHHHh-cccCCcchh------hccccCceeEecchHHHHHHHHHHhccCCccceEEEEeccccc
Q ss_pred eeccCCCeeEEEEcccccc-cchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEee
Q psy4493 102 LMTESSSLKLLYVSPEKLA-KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180 (323)
Q Consensus 102 l~~~~~~~~vii~Tp~~l~-~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSA 180 (323)
.......++|+++|+..+. . .+... .+-.+|+||||.+.... .+...............+|+
T Consensus 228 d~~el~~~dVVltTy~il~~~------~l~~i----~w~Riildea~~ikn~~-------tq~~~a~~~L~a~~RWcLtg 290 (674)
T KOG1001|consen 228 DKSELNSYDVVLTTYDILKNS------PLVKI----KWLRIVLDEAHTIKNKD-------TQIFKAVCQLDAKYRWCLTG 290 (674)
T ss_pred ccchhcCCceEEeeHHHhhcc------cccce----eEEEEEeccccccCCcc-------hHhhhhheeeccceeeeecC
Q ss_pred cCChhHHHHHHHHhCC
Q psy4493 181 TATTKVMLDVQKMLQI 196 (323)
Q Consensus 181 T~~~~~~~~i~~~l~~ 196 (323)
|+......++..+++.
T Consensus 291 tPiqn~~~~lysl~~f 306 (674)
T KOG1001|consen 291 TPIQNNLDELYSLFKF 306 (674)
T ss_pred ChhhhhHHHHHHHHHH
No 359
>KOG0337|consensus
Probab=89.44 E-value=0.19 Score=45.19 Aligned_cols=74 Identities=19% Similarity=0.167 Sum_probs=57.3
Q ss_pred CCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----e-eccCCCeeEEEEccccc
Q psy4493 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----L-MTESSSLKLLYVSPEKL 119 (323)
Q Consensus 46 ~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l-~~~~~~~~vii~Tp~~l 119 (323)
...+|++-.+..+|.+ =||..|+|+|..+||.++++++++..+-||+ ......++ | .......+-++.+|.+-
T Consensus 23 fqsmgL~~~v~raI~k-kg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilsptre 101 (529)
T KOG0337|consen 23 FQSMGLDYKVLRAIHK-KGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRE 101 (529)
T ss_pred ccccCCCHHHHHHHHH-hhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHH
Confidence 6678999999999988 6999999999999999999999999999999 33333333 1 11134456777788766
Q ss_pred c
Q psy4493 120 A 120 (323)
Q Consensus 120 ~ 120 (323)
+
T Consensus 102 L 102 (529)
T KOG0337|consen 102 L 102 (529)
T ss_pred H
Confidence 5
No 360
>PRK06921 hypothetical protein; Provisional
Probab=89.38 E-value=3.4 Score=35.58 Aligned_cols=17 Identities=6% Similarity=-0.042 Sum_probs=13.3
Q ss_pred CCCeEEEcCCCCCchHH
Q psy4493 38 KKDAIIIMPTDYPWSDR 54 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~ 54 (323)
+..+++..++|.|||.-
T Consensus 117 ~~~l~l~G~~G~GKThL 133 (266)
T PRK06921 117 KNSIALLGQPGSGKTHL 133 (266)
T ss_pred CCeEEEECCCCCcHHHH
Confidence 45688888999999844
No 361
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.37 E-value=1.8 Score=43.23 Aligned_cols=20 Identities=5% Similarity=0.084 Sum_probs=15.3
Q ss_pred CCCeEEEcCCCCCchHHHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRVRS 57 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~ 57 (323)
+.+.+++.|+|.|||..+..
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 45788999999999965433
No 362
>PHA02558 uvsW UvsW helicase; Provisional
Probab=89.35 E-value=0.41 Score=45.41 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=43.8
Q ss_pred CCCCcchHHHHHHHhcCCcEEEEccchh--hhhhcCee-eeccCCCeeEEEEcccccccchhHHHHHHH
Q psy4493 66 TDFRPNQLAAINIALLKKDAIIIMPTGK--LLKKKKIC-LMTESSSLKLLYVSPEKLAKSKSFMTKLQK 131 (323)
Q Consensus 66 ~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l~~~~i~-l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~ 131 (323)
-.|+++|.++++.++++++.++++|||+ .+-...+. .........++|.+|-+-+ ..+|.+.++.
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL-~~Q~~~~l~~ 180 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSL-VTQMIDDFVD 180 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHH-HHHHHHHHHH
Confidence 4789999999999999999999999999 11111111 0111234478888888776 3456555554
No 363
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=89.34 E-value=3 Score=38.96 Aligned_cols=15 Identities=27% Similarity=0.184 Sum_probs=13.0
Q ss_pred CCcceEEEecccccc
Q psy4493 136 GCLARIAIDEVHCCS 150 (323)
Q Consensus 136 ~~v~~vVvDEah~~~ 150 (323)
.+.+++|+||+|.+.
T Consensus 205 ~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 205 CQNDVLIIDDVQFLS 219 (450)
T ss_pred ccCCEEEEecccccc
Confidence 478999999999875
No 364
>KOG0327|consensus
Probab=89.26 E-value=0.1 Score=46.20 Aligned_cols=44 Identities=11% Similarity=-0.002 Sum_probs=37.9
Q ss_pred hcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHh
Q psy4493 18 KFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 18 ~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
.+|++.+...|+.++-....|.|+...+.+|+|||......+..
T Consensus 43 ~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq 86 (397)
T KOG0327|consen 43 AYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQ 86 (397)
T ss_pred hhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHh
Confidence 45889999999999999999999999999999999875554433
No 365
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=89.05 E-value=1.2 Score=37.21 Aligned_cols=13 Identities=8% Similarity=0.092 Sum_probs=11.8
Q ss_pred CeEEEcCCCCCch
Q psy4493 40 DAIIIMPTDYPWS 52 (323)
Q Consensus 40 ~~~~~~~tg~gkt 52 (323)
++++..|+|.|||
T Consensus 52 h~lf~GPPG~GKT 64 (233)
T PF05496_consen 52 HMLFYGPPGLGKT 64 (233)
T ss_dssp EEEEESSTTSSHH
T ss_pred eEEEECCCccchh
Confidence 5888999999998
No 366
>PRK05642 DNA replication initiation factor; Validated
Probab=88.95 E-value=2.3 Score=35.88 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=24.1
Q ss_pred CcceEEEeccccccccCCCchHHHHhHHHHHh-hCCCCCEEEEeecCChh
Q psy4493 137 CLARIAIDEVHCCSSWGHDFRPDYQYLSILKT-MFPDVPILGLTATATTK 185 (323)
Q Consensus 137 ~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~-~~~~~~~i~lSAT~~~~ 185 (323)
+.+++|+|++|.+.... ..... +-.+.. ...+...+++|++.++.
T Consensus 97 ~~d~LiiDDi~~~~~~~-~~~~~---Lf~l~n~~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 97 QYELVCLDDLDVIAGKA-DWEEA---LFHLFNRLRDSGRRLLLAASKSPR 142 (234)
T ss_pred hCCEEEEechhhhcCCh-HHHHH---HHHHHHHHHhcCCEEEEeCCCCHH
Confidence 56899999999774321 11221 222222 22233556777776553
No 367
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=88.84 E-value=2.8 Score=41.56 Aligned_cols=39 Identities=23% Similarity=0.108 Sum_probs=24.5
Q ss_pred CcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCCh
Q psy4493 137 CLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATT 184 (323)
Q Consensus 137 ~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~ 184 (323)
+..++|+||+|.+.... -..++....+.++++++||-.+
T Consensus 109 ~~~IL~IDEIh~Ln~~q---------QdaLL~~lE~g~IiLI~aTTen 147 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQ---------QDALLPWVENGTITLIGATTEN 147 (725)
T ss_pred CceEEEEeChhhCCHHH---------HHHHHHHhcCceEEEEEecCCC
Confidence 45689999999885411 1123333345677888887554
No 368
>KOG0350|consensus
Probab=88.80 E-value=2.9 Score=38.83 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=30.3
Q ss_pred HHHhcCCCCCCCcchHHHHHHHhc---------CCcEEEEccchh
Q psy4493 58 VLKSKFNLTDFRPNQLAAINIALL---------KKDAIIIMPTGK 93 (323)
Q Consensus 58 ~l~~~~g~~~~~~~Q~~~i~~~~~---------~~~~lv~~pTgs 93 (323)
++.. ++++...|+|..++|.+++ ++|+.|.|||||
T Consensus 151 ~l~k-~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGS 194 (620)
T KOG0350|consen 151 LLVK-MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGS 194 (620)
T ss_pred HHHH-hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCC
Confidence 3666 7899999999999998853 579999999999
No 369
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=88.78 E-value=7.3 Score=34.69 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=13.7
Q ss_pred hCCcceEEEeccccccc
Q psy4493 135 AGCLARIAIDEVHCCSS 151 (323)
Q Consensus 135 ~~~v~~vVvDEah~~~~ 151 (323)
....+++|+|++|.+..
T Consensus 111 ~~~~kV~iiEp~~~Ld~ 127 (325)
T PRK08699 111 RGGLRVILIHPAESMNL 127 (325)
T ss_pred cCCceEEEEechhhCCH
Confidence 35678899999998864
No 370
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.73 E-value=4.5 Score=39.37 Aligned_cols=18 Identities=39% Similarity=0.453 Sum_probs=14.8
Q ss_pred hhCCcceEEEeccccccc
Q psy4493 134 KAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 134 ~~~~v~~vVvDEah~~~~ 151 (323)
+...-+++||||+|.+..
T Consensus 124 ~~~~~KVvIIdEad~Lt~ 141 (620)
T PRK14954 124 QKGRYRVYIIDEVHMLST 141 (620)
T ss_pred hcCCCEEEEEeChhhcCH
Confidence 456778999999998864
No 371
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=88.72 E-value=2.7 Score=38.01 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=23.3
Q ss_pred cceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCC
Q psy4493 138 LARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183 (323)
Q Consensus 138 v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~ 183 (323)
=-+++|||+|++.... =..+.-...+-.++++-||-.
T Consensus 105 ~tiLflDEIHRfnK~Q---------QD~lLp~vE~G~iilIGATTE 141 (436)
T COG2256 105 RTILFLDEIHRFNKAQ---------QDALLPHVENGTIILIGATTE 141 (436)
T ss_pred ceEEEEehhhhcChhh---------hhhhhhhhcCCeEEEEeccCC
Confidence 3578999999986521 111333334667888888844
No 372
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=88.34 E-value=2.3 Score=42.08 Aligned_cols=116 Identities=15% Similarity=0.076 Sum_probs=0.0
Q ss_pred EEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-----------------------------
Q psy4493 43 IIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----------------------------- 93 (323)
Q Consensus 43 ~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs----------------------------- 93 (323)
+.|-||.|||-....++-. +.....--..++++||-+
T Consensus 79 I~METGTGKTy~Ylrtmfe--------------Lhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~ 144 (985)
T COG3587 79 ILMETGTGKTYTYLRTMFE--------------LHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESY 144 (985)
T ss_pred EEEecCCCceeeHHHHHHH--------------HHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEE
Q ss_pred -----hhhhcCeeeeccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcc---------------eEEEecccccccc
Q psy4493 94 -----LLKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLA---------------RIAIDEVHCCSSW 152 (323)
Q Consensus 94 -----~l~~~~i~l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~---------------~vVvDEah~~~~~ 152 (323)
......-. ...+.+++.+..-..+...-...+++ .-...+.. .+||||=|.+...
T Consensus 145 i~~~~~~~~~~~~----~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~ 220 (985)
T COG3587 145 IYDEDIEKFKFKS----NNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD 220 (985)
T ss_pred eechHHHHHhhcc----CCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc
Q ss_pred CCCchHHHHhHHHHHhhCCCCCEEE-EeecCChh
Q psy4493 153 GHDFRPDYQYLSILKTMFPDVPILG-LTATATTK 185 (323)
Q Consensus 153 ~~~~r~~~~~l~~l~~~~~~~~~i~-lSAT~~~~ 185 (323)
. ...+.+... +++.++ ++||...+
T Consensus 221 ~-------k~~~~i~~l--~pl~ilRfgATfkd~ 245 (985)
T COG3587 221 D-------KTYGAIKQL--NPLLILRFGATFKDE 245 (985)
T ss_pred h-------HHHHHHHhh--CceEEEEecccchhh
No 373
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.32 E-value=1.5 Score=41.69 Aligned_cols=47 Identities=11% Similarity=0.182 Sum_probs=27.9
Q ss_pred eccCCCeeEEEEcccccccchhHHHHHHH---HHhhCCcc-eEEEeccccccc
Q psy4493 103 MTESSSLKLLYVSPEKLAKSKSFMTKLQK---MYKAGCLA-RIAIDEVHCCSS 151 (323)
Q Consensus 103 ~~~~~~~~vii~Tp~~l~~~~~~~~~l~~---~~~~~~v~-~vVvDEah~~~~ 151 (323)
........|.++|.+.|.. .+...-+. ...+.+.+ +++-||||++..
T Consensus 76 sehnd~iei~fttiq~l~~--d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 76 SEHNDAIEIYFTTIQGLFS--DFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred CccCCceEEEEeehHHHHH--HHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 4456778999999998863 22111111 11222334 457899999964
No 374
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=88.11 E-value=4.3 Score=34.91 Aligned_cols=23 Identities=13% Similarity=-0.052 Sum_probs=16.5
Q ss_pred CCCeEEEcCCCCCchHHHHHHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLK 60 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~ 60 (323)
+.-.++.+++|.|||..+...+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~ 52 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYAL 52 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 44566788999999976555443
No 375
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=87.91 E-value=2.7 Score=39.29 Aligned_cols=21 Identities=10% Similarity=-0.122 Sum_probs=16.0
Q ss_pred eEEEcCCCCCchHHHHHHHHh
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~ 61 (323)
.++..|+|.|||..+....+.
T Consensus 42 ~Lf~Gp~G~GKtt~A~~lAk~ 62 (451)
T PRK06305 42 YLFSGIRGTGKTTLARIFAKA 62 (451)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 567889999999766555554
No 376
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=87.87 E-value=3.7 Score=34.28 Aligned_cols=17 Identities=6% Similarity=-0.218 Sum_probs=13.7
Q ss_pred CCCeEEEcCCCCCchHH
Q psy4493 38 KKDAIIIMPTDYPWSDR 54 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~ 54 (323)
.+.+++..|+|.|||.-
T Consensus 42 ~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHL 58 (227)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 34688899999999944
No 377
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.76 E-value=2.8 Score=37.99 Aligned_cols=19 Identities=11% Similarity=0.057 Sum_probs=14.2
Q ss_pred CeEEEcCCCCCchHHHHHH
Q psy4493 40 DAIIIMPTDYPWSDRVRSV 58 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~ 58 (323)
..++..|+|+|||..+...
T Consensus 41 ~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 41 ALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3667889999999655444
No 378
>CHL00095 clpC Clp protease ATP binding subunit
Probab=87.71 E-value=2.2 Score=43.19 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=22.1
Q ss_pred ChhHHHHHHHHh---cCCCeEEEcCCCCCchHHHHHH
Q psy4493 25 RPNQLAAINIAL---LKKDAIIIMPTDYPWSDRVRSV 58 (323)
Q Consensus 25 ~~~Q~~~~~~~~---~~~~~~~~~~tg~gkt~~~~~~ 58 (323)
|+.+.+.+-.++ ..++.+++.|+|.|||..+...
T Consensus 184 r~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~l 220 (821)
T CHL00095 184 REKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGL 220 (821)
T ss_pred cHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHH
Confidence 445555444443 2457899999999999665433
No 379
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=87.50 E-value=1.3 Score=44.80 Aligned_cols=66 Identities=14% Similarity=0.221 Sum_probs=45.7
Q ss_pred HHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCeee---eccCCCeeEEEEcccccccc
Q psy4493 56 RSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKICL---MTESSSLKLLYVSPEKLAKS 122 (323)
Q Consensus 56 ~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~l---~~~~~~~~vii~Tp~~l~~~ 122 (323)
.+++.+ .|...|...|.+|+..+.+|++++|..|||| .-...-+++ .......+-++.-|-..+.+
T Consensus 60 ~~~l~~-~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~ 129 (851)
T COG1205 60 KSALVK-AGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALAN 129 (851)
T ss_pred HHHHHH-hccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHh
Confidence 444444 5777799999999999999999999999999 222222221 12233346677788877754
No 380
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=87.44 E-value=3.9 Score=34.01 Aligned_cols=21 Identities=5% Similarity=-0.103 Sum_probs=15.6
Q ss_pred CCCeEEEcCCCCCchHHHHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSV 58 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~ 58 (323)
+..+++..|+|.|||..+...
T Consensus 38 ~~~lll~G~~G~GKT~la~~~ 58 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAA 58 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 456888999999999554433
No 381
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=87.21 E-value=0.69 Score=35.71 Aligned_cols=20 Identities=35% Similarity=0.330 Sum_probs=17.2
Q ss_pred eecccccCC--ccEEEEccCCC
Q psy4493 281 FGLGIDKPN--VRFVIHHCLSK 300 (323)
Q Consensus 281 ~~~Gid~~~--v~~Vi~~~~p~ 300 (323)
+++|||+|+ ++.||..++|.
T Consensus 59 ~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 59 VSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred eecceecCCCccEEEEEEecCC
Confidence 789999997 68999988874
No 382
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=87.20 E-value=4.3 Score=35.79 Aligned_cols=26 Identities=8% Similarity=0.022 Sum_probs=19.2
Q ss_pred CCC-eEEEcCCCCCchHHHHHHHHhcC
Q psy4493 38 KKD-AIIIMPTDYPWSDRVRSVLKSKF 63 (323)
Q Consensus 38 ~~~-~~~~~~tg~gkt~~~~~~l~~~~ 63 (323)
..+ .++..|.|.||+..+....+..+
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 445 78888999999977666665544
No 383
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=87.14 E-value=6.3 Score=35.17 Aligned_cols=46 Identities=7% Similarity=-0.146 Sum_probs=26.3
Q ss_pred hhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChh
Q psy4493 134 KAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTK 185 (323)
Q Consensus 134 ~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 185 (323)
..+..+++||||||.+... ....|-......|+.-++.|+++-+..
T Consensus 107 ~~~~~kvviI~~a~~~~~~------a~NaLLK~LEEPp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 107 VESNKKVYIIEHADKMTAS------AANSLLKFLEEPSGGTTAILLTENKHQ 152 (329)
T ss_pred cccCceEEEeehHhhhCHH------HHHHHHHHhcCCCCCceEEEEeCChHh
Confidence 4456789999999988642 223343344444444445555553333
No 384
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=87.11 E-value=2.1 Score=43.40 Aligned_cols=150 Identities=17% Similarity=0.143 Sum_probs=81.9
Q ss_pred CCCChhHHHHHHHHh-----cCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhc-CCcEEEEccchh--
Q psy4493 22 TDFRPNQLAAINIAL-----LKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL-KKDAIIIMPTGK-- 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~-----~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~-~~~~lv~~pTgs-- 93 (323)
..+|++|.+.++... .+...++....|.|||.+.+..+...+ ..... .+..++++|+..
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~-------------~~~~~~~~~~liv~p~s~~~ 403 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLL-------------ESIKVYLGPALIVVPASLLS 403 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhh-------------hcccCCCCCeEEEecHHHHH
Confidence 556888999775433 255677788999999977666654310 00001 234677777755
Q ss_pred ----hhh----hcC-ee---------------eeccC-----CCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEe
Q psy4493 94 ----LLK----KKK-IC---------------LMTES-----SSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAID 144 (323)
Q Consensus 94 ----~l~----~~~-i~---------------l~~~~-----~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvD 144 (323)
.+. ... +. +.... ..++++++|-+.+....... .......++.+|+|
T Consensus 404 nw~~e~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~----~~l~~~~~~~~v~D 479 (866)
T COG0553 404 NWKREFEKFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDH----GGLKKIEWDRVVLD 479 (866)
T ss_pred HHHHHHhhhCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhH----HHHhhceeeeeehh
Confidence 111 011 11 00000 12789999988876311012 22333478899999
Q ss_pred ccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhC
Q psy4493 145 EVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQ 195 (323)
Q Consensus 145 Eah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~ 195 (323)
|+|.+-... ......+ . .......+++|+|+-.+...++-+.+.
T Consensus 480 Ea~~ikn~~---s~~~~~l---~-~~~~~~~~~LtgTPlen~l~eL~sl~~ 523 (866)
T COG0553 480 EAHRIKNDQ---SSEGKAL---Q-FLKALNRLDLTGTPLENRLGELWSLLQ 523 (866)
T ss_pred hHHHHhhhh---hHHHHHH---H-HHhhcceeeCCCChHhhhHHHHHHHHH
Confidence 999975421 1222222 2 223344589999985444444444444
No 385
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=86.97 E-value=5 Score=38.24 Aligned_cols=21 Identities=5% Similarity=-0.086 Sum_probs=15.8
Q ss_pred eEEEcCCCCCchHHHHHHHHh
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~ 61 (323)
.++..|.|+|||..+....+.
T Consensus 39 yLf~Gp~G~GKTt~Ar~LAk~ 59 (535)
T PRK08451 39 YLFSGLRGSGKTSSARIFARA 59 (535)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 367889999999766655554
No 386
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=86.74 E-value=4.5 Score=41.06 Aligned_cols=22 Identities=9% Similarity=0.086 Sum_probs=16.6
Q ss_pred CCCeEEEcCCCCCchHHHHHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l 59 (323)
..+.+++.|.|.|||..+....
T Consensus 208 ~~n~lLvG~pGvGKTal~~~La 229 (852)
T TIGR03345 208 QNNPILTGEAGVGKTAVVEGLA 229 (852)
T ss_pred cCceeEECCCCCCHHHHHHHHH
Confidence 3568899999999996654443
No 387
>KOG0341|consensus
Probab=86.73 E-value=0.8 Score=40.92 Aligned_cols=67 Identities=18% Similarity=0.191 Sum_probs=49.0
Q ss_pred hHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------------hhhh-cCeeeeccCCCeeEEEEccc
Q psy4493 52 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------------LLKK-KKICLMTESSSLKLLYVSPE 117 (323)
Q Consensus 52 t~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------------~l~~-~~i~l~~~~~~~~vii~Tp~ 117 (323)
+..++..+++ =|+..|+|+|.+.+|.++.|++.+-+|-||| .|.+ ...++....+.+-++||. .
T Consensus 178 P~~~L~~lk~-KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicP-S 255 (610)
T KOG0341|consen 178 PKPLLRGLKK-KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICP-S 255 (610)
T ss_pred CHHHHHHHHh-cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcC-c
Confidence 3456666766 6999999999999999999999999999999 2222 222335556677777764 4
Q ss_pred ccc
Q psy4493 118 KLA 120 (323)
Q Consensus 118 ~l~ 120 (323)
+-+
T Consensus 256 REL 258 (610)
T KOG0341|consen 256 REL 258 (610)
T ss_pred HHH
Confidence 443
No 388
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=86.68 E-value=5.3 Score=35.39 Aligned_cols=45 Identities=11% Similarity=-0.074 Sum_probs=26.4
Q ss_pred hhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChh
Q psy4493 134 KAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTK 185 (323)
Q Consensus 134 ~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 185 (323)
..+..+++||||||.|... ....|-......|++ ++.|.++-+..
T Consensus 121 ~~~~~kVvII~~ae~m~~~------aaNaLLK~LEEPp~~-~fILi~~~~~~ 165 (314)
T PRK07399 121 LEAPRKVVVIEDAETMNEA------AANALLKTLEEPGNG-TLILIAPSPES 165 (314)
T ss_pred ccCCceEEEEEchhhcCHH------HHHHHHHHHhCCCCC-eEEEEECChHh
Confidence 3457889999999988642 223344444555655 44444443333
No 389
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=86.63 E-value=14 Score=30.12 Aligned_cols=127 Identities=13% Similarity=0.149 Sum_probs=62.1
Q ss_pred cCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEE-c-----cchh--hhhhc-CeeeeccCC
Q psy4493 37 LKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIII-M-----PTGK--LLKKK-KICLMTESS 107 (323)
Q Consensus 37 ~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~-~-----pTgs--~l~~~-~i~l~~~~~ 107 (323)
....+.+..++|.|||..... .++.++..|..++++ . .+|. .+... ++.+.....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g----------------~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~ 84 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFG----------------MALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGT 84 (191)
T ss_pred cCCeEEEECCCCCChHHHHHH----------------HHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCC
Confidence 455688888999999976433 334556677665433 2 2233 33332 333211111
Q ss_pred CeeEEEEcccccccchhH---HHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCCh
Q psy4493 108 SLKLLYVSPEKLAKSKSF---MTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATT 184 (323)
Q Consensus 108 ~~~vii~Tp~~l~~~~~~---~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~ 184 (323)
.+. +.+.+.-...... ....+........++||+||+=....+| +-+.-.-+..+.. .|...-+.+|.--.+
T Consensus 85 ~~~--~~~~~~~e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~g--li~~eevi~~L~~-rp~~~evVlTGR~~p 159 (191)
T PRK05986 85 GFT--WETQDRERDIAAAREGWEEAKRMLADESYDLVVLDELTYALKYG--YLDVEEVLEALNA-RPGMQHVVITGRGAP 159 (191)
T ss_pred CCc--ccCCCcHHHHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCC--CccHHHHHHHHHc-CCCCCEEEEECCCCC
Confidence 111 1111110000111 1222333445689999999999888765 3332222333444 344444556665444
No 390
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=86.54 E-value=1.4 Score=38.31 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=22.3
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
.++-.|||.|||--+...+.. ..-.| ....|+.+.|+..
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~--~lI~P------------~PETVfFItP~~~ 128 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISC--QLIQP------------PPETVFFITPQKD 128 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhc--CcccC------------CCCceEEECCCCC
Confidence 445679999998443333322 11111 1245788888766
No 391
>KOG0701|consensus
Probab=86.41 E-value=0.72 Score=48.85 Aligned_cols=77 Identities=18% Similarity=0.116 Sum_probs=61.1
Q ss_pred CcEEEEeCChhHHHHHHHHHHhCC-CeEEeecCCCCCCc-----------------------------ceeeecccccCC
Q psy4493 240 QSGIIYTTSIKECEDLREELRNRG-LRVSAYHAKLESNV-----------------------------SIAFGLGIDKPN 289 (323)
Q Consensus 240 ~~~iVF~~s~~~~~~l~~~L~~~~-~~v~~~h~~~~~~~-----------------------------T~~~~~Gid~~~ 289 (323)
-..++||+.+..+....+.+.+.. ..+..+.|...+.. |.++.+|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 455899999999988888887642 23333444444333 999999999999
Q ss_pred ccEEEEccCCCCHhHHHHHhccCCCCC
Q psy4493 290 VRFVIHHCLSKSMENFYQVSIAFGLGK 316 (323)
Q Consensus 290 v~~Vi~~~~p~~~~~~~qr~GR~gR~g 316 (323)
++.|+.++.|....+|+|..||+-+.+
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999996654
No 392
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=86.30 E-value=1.2 Score=31.70 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=32.4
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~ 274 (323)
++.+++|+|.+-..+...+..|.+.|+.+..+.||+.
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 5678999999988899999999999999888888864
No 393
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=86.25 E-value=1.6 Score=42.44 Aligned_cols=23 Identities=9% Similarity=-0.133 Sum_probs=17.3
Q ss_pred HHhcCCCeEEEcCCCCCchHHHH
Q psy4493 34 IALLKKDAIIIMPTDYPWSDRVR 56 (323)
Q Consensus 34 ~~~~~~~~~~~~~tg~gkt~~~~ 56 (323)
....++.+++.+|||.|||-...
T Consensus 12 al~~~~~lliEA~TGtGKTlAYL 34 (636)
T TIGR03117 12 SLRQKRIGMLEASTGVGKTLAMI 34 (636)
T ss_pred HHhcCCeEEEEcCCCCcHHHHHH
Confidence 33456778899999999995543
No 394
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.25 E-value=3.7 Score=39.84 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=16.5
Q ss_pred eEEEcCCCCCchHHHHHHHHh
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~ 61 (323)
.++..|.|.|||..+....+.
T Consensus 41 ~Lf~Gp~G~GKTtlA~~lA~~ 61 (585)
T PRK14950 41 YLFTGPRGVGKTSTARILAKA 61 (585)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 478899999999776666555
No 395
>KOG0328|consensus
Probab=86.23 E-value=0.65 Score=39.73 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=34.4
Q ss_pred hcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHH
Q psy4493 18 KFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRV 55 (323)
Q Consensus 18 ~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~ 55 (323)
..|++.+...|..++..+++|+|++..+..|.|||..+
T Consensus 44 ~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~ 81 (400)
T KOG0328|consen 44 AYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATF 81 (400)
T ss_pred HhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEE
Confidence 34889999999999999999999999999999999654
No 396
>PRK07952 DNA replication protein DnaC; Validated
Probab=86.20 E-value=12 Score=31.87 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=12.9
Q ss_pred CCcceEEEecccccc
Q psy4493 136 GCLARIAIDEVHCCS 150 (323)
Q Consensus 136 ~~v~~vVvDEah~~~ 150 (323)
.+++++||||++...
T Consensus 161 ~~~dlLvIDDig~~~ 175 (244)
T PRK07952 161 SNVDLLVIDEIGVQT 175 (244)
T ss_pred ccCCEEEEeCCCCCC
Confidence 478999999999765
No 397
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=86.07 E-value=14 Score=35.05 Aligned_cols=60 Identities=15% Similarity=0.167 Sum_probs=41.3
Q ss_pred CCCChhHHHHHHHHh------cC----CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccc
Q psy4493 22 TDFRPNQLAAINIAL------LK----KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT 91 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~------~~----~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pT 91 (323)
..+.|+|...+-.++ .+ +.+++.+|-+-|||.-+....-..+ +.....+.++.++||+
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~------------l~~~~~~~~~~i~A~s 127 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTAL------------LLNWRSGAGIYILAPS 127 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHH------------HhhhhcCCcEEEEecc
Confidence 455689988887775 11 2477888999999976654443322 2223577889999999
Q ss_pred hh
Q psy4493 92 GK 93 (323)
Q Consensus 92 gs 93 (323)
..
T Consensus 128 ~~ 129 (546)
T COG4626 128 VE 129 (546)
T ss_pred HH
Confidence 88
No 398
>KOG0329|consensus
Probab=86.04 E-value=2.6 Score=35.64 Aligned_cols=42 Identities=14% Similarity=0.118 Sum_probs=36.0
Q ss_pred chHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 51 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 51 kt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
+...+..++-+ .||+.|+++|.++||...-|.+++..|..|-
T Consensus 49 lkpellraivd-cgfehpsevqhecipqailgmdvlcqaksgm 90 (387)
T KOG0329|consen 49 LKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGM 90 (387)
T ss_pred cCHHHHHHHHh-ccCCCchHhhhhhhhHHhhcchhheecccCC
Confidence 34566777777 8999999999999999999999999998765
No 399
>PRK11054 helD DNA helicase IV; Provisional
Probab=85.77 E-value=1.4 Score=43.31 Aligned_cols=100 Identities=7% Similarity=0.043 Sum_probs=58.4
Q ss_pred CcHHHHHHHHHhcC---CCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCC
Q psy4493 7 WSDRVRSVLKSKFN---LTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKK 83 (323)
Q Consensus 7 ~~~~~~~~l~~~~~---~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~ 83 (323)
|.....+..+.-|. ...+.+.|++++.. ...++++.+..|+|||..+..-+..+. + .....+.
T Consensus 177 ~~~~~l~~~~~~f~~~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl--------~----~~~~~~~ 242 (684)
T PRK11054 177 WTEAMLEEYADFFSQVESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLL--------A----RGQAQPE 242 (684)
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHH--------H----hCCCCHH
Confidence 55555555555553 46789999887763 245688999999999988776654421 0 0011345
Q ss_pred cEEEEccchhhhhhcCeeeeccCCCeeEEEEcccccc
Q psy4493 84 DAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120 (323)
Q Consensus 84 ~~lv~~pTgs~l~~~~i~l~~~~~~~~vii~Tp~~l~ 120 (323)
++++++.|+.....+.-+|....+...|-|.|-..+.
T Consensus 243 ~IL~ltft~~AA~em~eRL~~~lg~~~v~v~TFHSla 279 (684)
T PRK11054 243 QILLLAFGRQAAEEMDERIRERLGTEDITARTFHALA 279 (684)
T ss_pred HeEEEeccHHHHHHHHHHHHHhcCCCCcEEEeHHHHH
Confidence 7999999988333322221111112345566655553
No 400
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=85.66 E-value=5.8 Score=38.21 Aligned_cols=18 Identities=33% Similarity=0.320 Sum_probs=14.7
Q ss_pred hhCCcceEEEeccccccc
Q psy4493 134 KAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 134 ~~~~v~~vVvDEah~~~~ 151 (323)
...+.+++||||+|.+..
T Consensus 116 ~~~~~KVvIIDEa~~Ls~ 133 (563)
T PRK06647 116 ASSRYRVYIIDEVHMLSN 133 (563)
T ss_pred hcCCCEEEEEEChhhcCH
Confidence 346788999999998864
No 401
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=85.59 E-value=2 Score=34.52 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=25.8
Q ss_pred EEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccch
Q psy4493 42 IIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG 92 (323)
Q Consensus 42 ~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTg 92 (323)
++..|..+|||+.++..+.+. -..+++++++=|..
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~----------------~~~~~~v~~~kp~~ 39 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRY----------------EIAGKKVLVFKPAI 39 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHH----------------HHTT-EEEEEEEST
T ss_pred EEECCcCChhHHHHHHHHHHH----------------HhCCCeEEEEEecc
Confidence 456799999999988887662 23678888888853
No 402
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=85.50 E-value=3.8 Score=41.57 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=58.4
Q ss_pred CCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh---------
Q psy4493 23 DFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--------- 93 (323)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--------- 93 (323)
++++.-.+.+-.+....--+..|.||-|||- ...|.. .-..+.|+.|-|+-.--.
T Consensus 136 dm~~ydVQLiGgivLh~G~IAEM~TGEGKTL--vatlp~--------------yLnAL~G~gVHvVTvNDYLA~RDaewm 199 (1025)
T PRK12900 136 DMVPYDVQLIGGIVLHSGKISEMATGEGKTL--VSTLPT--------------FLNALTGRGVHVVTVNDYLAQRDKEWM 199 (1025)
T ss_pred CccccchHHhhhHHhhcCCccccCCCCCcch--HhHHHH--------------HHHHHcCCCcEEEeechHhhhhhHHHH
Confidence 3454444444444444555788999999992 222221 111346666543322221
Q ss_pred --hhhhcCeee-----------eccCCCeeEEEEcccccccchhHHHHHH---HHHhhCCcceEEEecccccc
Q psy4493 94 --LLKKKKICL-----------MTESSSLKLLYVSPEKLAKSKSFMTKLQ---KMYKAGCLARIAIDEVHCCS 150 (323)
Q Consensus 94 --~l~~~~i~l-----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~---~~~~~~~v~~vVvDEah~~~ 150 (323)
...-+|+.+ ....=.+||.++|..-+-.. -+++.+. .-.....+.+.||||+|.++
T Consensus 200 ~p~y~flGLtVg~i~~~~~~~~Rr~aY~~DItYgTn~EfGFD-YLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 200 NPVFEFHGLSVGVILNTMRPEERREQYLCDITYGTNNEFGFD-YLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred HHHHHHhCCeeeeeCCCCCHHHHHHhCCCcceecCCCccccc-cchhccccchhhhhccCCceEEEechhhhh
Confidence 333445542 11223579999998766421 1111111 11233578899999999775
No 403
>KOG2028|consensus
Probab=85.44 E-value=4.5 Score=36.28 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=29.4
Q ss_pred CCCCCCCcHHHH-HHHHHhcCCCCCChhHHHHHHHHh-cC--CCeEEEcCCCCCchH
Q psy4493 1 MLPNYPWSDRVR-SVLKSKFNLTDFRPNQLAAINIAL-LK--KDAIIIMPTDYPWSD 53 (323)
Q Consensus 1 ~~~~~~~~~~~~-~~l~~~~~~~~~~~~Q~~~~~~~~-~~--~~~~~~~~tg~gkt~ 53 (323)
|.++-|.+++++ +.|..++|-.++-. |...+...+ ++ .+.+++.|.|.|||.
T Consensus 122 ~~qh~PLaermRPktL~dyvGQ~hlv~-q~gllrs~ieq~~ipSmIlWGppG~GKTt 177 (554)
T KOG2028|consen 122 MLQHKPLAERMRPKTLDDYVGQSHLVG-QDGLLRSLIEQNRIPSMILWGPPGTGKTT 177 (554)
T ss_pred HhccCChhhhcCcchHHHhcchhhhcC-cchHHHHHHHcCCCCceEEecCCCCchHH
Confidence 445555544332 45555555554443 444443333 33 358889999999984
No 404
>KOG2228|consensus
Probab=85.32 E-value=5.1 Score=35.52 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCC--CCCC---hhHHHHHHHH----h--cCCCeEEEcCCCCCchHHHHHHHHh
Q psy4493 10 RVRSVLKSKFNL--TDFR---PNQLAAINIA----L--LKKDAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 10 ~~~~~l~~~~~~--~~~~---~~Q~~~~~~~----~--~~~~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
.++..|+.++.. ..++ +.|....+.+ . .++.++++.|-|+|||.-+...|..
T Consensus 10 siqr~l~~rl~~~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~ 72 (408)
T KOG2228|consen 10 SIQRILRERLCGPHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD 72 (408)
T ss_pred HHHHHHHHHhcCCCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh
Confidence 466777777743 2233 4444433322 1 3567999999999999665555543
No 405
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=85.24 E-value=4.8 Score=35.67 Aligned_cols=85 Identities=14% Similarity=0.112 Sum_probs=53.5
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh----hhhhcCeeeeccCCCeeEEEEcc
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----LLKKKKICLMTESSSLKLLYVSP 116 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs----~l~~~~i~l~~~~~~~~vii~Tp 116 (323)
+-+..|+++|||.-....+.+ .| .++..++.+-+.++ .+.+.|+++ -+++|..|
T Consensus 56 vEi~G~~ssGKttLaL~~ia~---------~q-------~~g~~~a~ID~e~~ld~~~a~~lGvdl------~rllv~~P 113 (322)
T PF00154_consen 56 VEIYGPESSGKTTLALHAIAE---------AQ-------KQGGICAFIDAEHALDPEYAESLGVDL------DRLLVVQP 113 (322)
T ss_dssp EEEEESTTSSHHHHHHHHHHH---------HH-------HTT-EEEEEESSS---HHHHHHTT--G------GGEEEEE-
T ss_pred EEEeCCCCCchhhhHHHHHHh---------hh-------cccceeEEecCcccchhhHHHhcCccc------cceEEecC
Confidence 446779999999887777755 22 24667788888777 677788773 25888888
Q ss_pred cccccchhHHHHHHHHHhhCCcceEEEecccccc
Q psy4493 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCS 150 (323)
Q Consensus 117 ~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~ 150 (323)
+.-. ......+.......+++||+|=+-.+.
T Consensus 114 ~~~E---~al~~~e~lirsg~~~lVVvDSv~al~ 144 (322)
T PF00154_consen 114 DTGE---QALWIAEQLIRSGAVDLVVVDSVAALV 144 (322)
T ss_dssp SSHH---HHHHHHHHHHHTTSESEEEEE-CTT-B
T ss_pred CcHH---HHHHHHHHHhhcccccEEEEecCcccC
Confidence 7643 222344455556688999999887663
No 406
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.20 E-value=20 Score=29.71 Aligned_cols=127 Identities=13% Similarity=0.083 Sum_probs=73.2
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh------hhhhcCeeeeccCCCeeEEEE
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK------LLKKKKICLMTESSSLKLLYV 114 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs------~l~~~~i~l~~~~~~~~vii~ 114 (323)
+++..+.|.|||.- -|+-+.-.+.++..+.+++-.-+ ...+.+.++....-.-.+.|.
T Consensus 31 ~lIEGd~~tGKSvL----------------sqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~ 94 (235)
T COG2874 31 ILIEGDNGTGKSVL----------------SQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFF 94 (235)
T ss_pred EEEECCCCccHHHH----------------HHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEE
Confidence 55667999999943 45555556677777766665544 444555553222222233333
Q ss_pred c----cccccc--chhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCCh
Q psy4493 115 S----PEKLAK--SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATT 184 (323)
Q Consensus 115 T----p~~l~~--~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~ 184 (323)
+ |-.... ...+.+.+-......+=+++|||-...+.... +.......+..++.....-++|.+|+-+..
T Consensus 95 ~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-~~~~vl~fm~~~r~l~d~gKvIilTvhp~~ 169 (235)
T COG2874 95 PVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-SEDAVLNFMTFLRKLSDLGKVIILTVHPSA 169 (235)
T ss_pred EecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-cHHHHHHHHHHHHHHHhCCCEEEEEeChhh
Confidence 3 222211 11222233333334567899999998876532 344555556777777667899999987553
No 407
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=84.83 E-value=1.2 Score=42.04 Aligned_cols=19 Identities=37% Similarity=0.336 Sum_probs=15.6
Q ss_pred HhhCCcceEEEeccccccc
Q psy4493 133 YKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 133 ~~~~~v~~vVvDEah~~~~ 151 (323)
....+.+..||||+|++..
T Consensus 115 P~~~ryKVyiIDEvHMLS~ 133 (515)
T COG2812 115 PSEGRYKVYIIDEVHMLSK 133 (515)
T ss_pred CccccceEEEEecHHhhhH
Confidence 3456889999999999875
No 408
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.76 E-value=2.8 Score=41.51 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=26.9
Q ss_pred CcceEEEeccccccccCCCchHHHHhHHHHHhhC-CCCCEEEEeecCC
Q psy4493 137 CLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF-PDVPILGLTATAT 183 (323)
Q Consensus 137 ~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~-~~~~~i~lSAT~~ 183 (323)
.-=++|+|..|.+.+- ..... +..+.+.. ++...+..|=+-|
T Consensus 129 ~pl~LVlDDyHli~~~--~l~~~---l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 129 GPLYLVLDDYHLISDP--ALHEA---LRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred CceEEEeccccccCcc--cHHHH---HHHHHHhCCCCeEEEEEeccCC
Confidence 3458999999998762 22233 33344444 4778888887754
No 409
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=84.72 E-value=8.1 Score=39.12 Aligned_cols=37 Identities=14% Similarity=0.076 Sum_probs=24.3
Q ss_pred ChhHHHHHHHH----hcCC---Ce-EEEcCCCCCchHHHHHHHHh
Q psy4493 25 RPNQLAAINIA----LLKK---DA-IIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 25 ~~~Q~~~~~~~----~~~~---~~-~~~~~tg~gkt~~~~~~l~~ 61 (323)
|+.|.+.+... +.+. .+ .+..+||.|||..+...+..
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrE 804 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQL 804 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 56666644433 2221 23 57889999999888877765
No 410
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=84.56 E-value=21 Score=32.56 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=60.6
Q ss_pred CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcE-EEEccch---h--hhhhcCeeeeccCCCeeE
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDA-IIIMPTG---K--LLKKKKICLMTESSSLKL 111 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~-lv~~pTg---s--~l~~~~i~l~~~~~~~~v 111 (323)
++-+.++.|+|.|||..+.+.... ...+++.+ ++.+-|- + .++..+ ...+..+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~----------------l~~~g~~V~lItaDtyR~gAveQLk~ya-----e~lgvpv 264 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ----------------LLKQNRTVGFITTDTFRSGAVEQFQGYA-----DKLDVEL 264 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH----------------HHHcCCeEEEEeCCccCccHHHHHHHHh-----hcCCCCE
Confidence 344667889999999776655432 12245555 4444331 1 222221 1112222
Q ss_pred E-EEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhC-CCCCEEEEeecCChhHHHH
Q psy4493 112 L-YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF-PDVPILGLTATATTKVMLD 189 (323)
Q Consensus 112 i-i~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~ 189 (323)
. ..+|+.+. ..+.........++|+||=+=+... -...+..+..+.... ++..++.+|||........
T Consensus 265 ~~~~dp~dL~------~al~~l~~~~~~D~VLIDTAGr~~~----d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~ 334 (407)
T PRK12726 265 IVATSPAELE------EAVQYMTYVNCVDHILIDTVGRNYL----AEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMT 334 (407)
T ss_pred EecCCHHHHH------HHHHHHHhcCCCCEEEEECCCCCcc----CHHHHHHHHHHhhccCCceEEEECCCcccHHHHHH
Confidence 2 23444442 2444333334689999998865432 223334444444332 2333556788766544444
Q ss_pred HHH
Q psy4493 190 VQK 192 (323)
Q Consensus 190 i~~ 192 (323)
+.+
T Consensus 335 i~~ 337 (407)
T PRK12726 335 ILP 337 (407)
T ss_pred HHH
Confidence 433
No 411
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=84.51 E-value=8.3 Score=35.05 Aligned_cols=81 Identities=11% Similarity=0.010 Sum_probs=42.1
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh------hhhhcCeeeeccCCCeeEEEE
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK------LLKKKKICLMTESSSLKLLYV 114 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs------~l~~~~i~l~~~~~~~~vii~ 114 (323)
.++..++|.|||..+...+.+. ...+..++++.-..+ .....++. . .++.+.
T Consensus 85 vLI~G~pG~GKStLllq~a~~~----------------a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~----~--~~l~l~ 142 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARL----------------AKRGGKVLYVSGEESPEQIKLRADRLGIS----T--ENLYLL 142 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHH----------------HhcCCeEEEEECCcCHHHHHHHHHHcCCC----c--ccEEEE
Confidence 5567799999997655554331 123456766654333 12233322 1 123332
Q ss_pred cccccccchhHHHHHHHHHhhCCcceEEEecccccc
Q psy4493 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCS 150 (323)
Q Consensus 115 Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~ 150 (323)
....+. .+.......+.+++|||+++.+.
T Consensus 143 ~e~~le-------~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 143 AETNLE-------DILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred ccCcHH-------HHHHHHHhcCCcEEEEcchHHhh
Confidence 221111 22222223478999999998775
No 412
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=84.47 E-value=2.2 Score=30.14 Aligned_cols=37 Identities=14% Similarity=0.002 Sum_probs=31.5
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCC-eEEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~v~~~h~~~~ 274 (323)
++.+++|||++-..+...+..|...|+ ++..+.|++.
T Consensus 55 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 55 RATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 567899999998888999999998898 5888888764
No 413
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=84.10 E-value=26 Score=30.30 Aligned_cols=63 Identities=17% Similarity=0.129 Sum_probs=35.0
Q ss_pred HHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhC-CCCCEEEEeecCChhHHHHHHHHh
Q psy4493 128 KLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF-PDVPILGLTATATTKVMLDVQKML 194 (323)
Q Consensus 128 ~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l 194 (323)
.++......+.++++||.+=.... -...+..+..+.... |+..++.+|||...+....+.+.+
T Consensus 145 ~l~~l~~~~~~D~ViIDt~Gr~~~----~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f 208 (270)
T PRK06731 145 ALTYFKEEARVDYILIDTAGKNYR----ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF 208 (270)
T ss_pred HHHHHHhcCCCCEEEEECCCCCcC----CHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHh
Confidence 343332334789999999875532 122334443333332 333466799998765555555544
No 414
>PHA00350 putative assembly protein
Probab=84.06 E-value=4.3 Score=37.08 Aligned_cols=30 Identities=13% Similarity=-0.113 Sum_probs=20.2
Q ss_pred EEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEE
Q psy4493 42 IIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAI 86 (323)
Q Consensus 42 ~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~l 86 (323)
++....|+|||...+ +..+++++.+|+.++
T Consensus 5 l~tG~pGSGKT~~aV---------------~~~i~palk~GR~V~ 34 (399)
T PHA00350 5 AIVGRPGSYKSYEAV---------------VYHIIPALKDGRKVI 34 (399)
T ss_pred EEecCCCCchhHHHH---------------HHHHHHHHHCCCEEE
Confidence 456789999995433 334567777887554
No 415
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=84.05 E-value=24 Score=29.55 Aligned_cols=97 Identities=12% Similarity=0.057 Sum_probs=48.8
Q ss_pred CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh------hhhhcCeeeec--cCCCe
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK------LLKKKKICLMT--ESSSL 109 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs------~l~~~~i~l~~--~~~~~ 109 (323)
+.-.++..++|.|||.-....+. ..+.+|..++++.--.+ .+.+.|+.+.. ..+..
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~----------------~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l 88 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVY----------------GALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYL 88 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHH----------------HHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCc
Confidence 34466778999999955433332 22335666655554333 34455554311 12223
Q ss_pred eEEEEccccccc----chhHHHHHHHHHhhCCcceEEEecccccc
Q psy4493 110 KLLYVSPEKLAK----SKSFMTKLQKMYKAGCLARIAIDEVHCCS 150 (323)
Q Consensus 110 ~vii~Tp~~l~~----~~~~~~~l~~~~~~~~v~~vVvDEah~~~ 150 (323)
.++-..|+.... .......+.......+.+++|+||.-.+.
T Consensus 89 ~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 89 RIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred eEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 333232222210 01223334343333478899999999653
No 416
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=84.02 E-value=19 Score=35.88 Aligned_cols=55 Identities=20% Similarity=0.145 Sum_probs=33.0
Q ss_pred CCcceEEEeccccccccCCCchHHHHhHHHHHhhC-CCCCEEEEeecCChhHHHHHHHHh
Q psy4493 136 GCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF-PDVPILGLTATATTKVMLDVQKML 194 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l 194 (323)
.+.++|+||=+=+... .......+..+.... |...++.++||...+..+++.+.+
T Consensus 262 ~~~D~VLIDTAGRs~~----d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 262 GDKHLVLIDTVGMSQR----DRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred cCCCEEEEeCCCCCcc----CHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 4668999998876532 222333444443322 345678899998776666555444
No 417
>PRK04841 transcriptional regulator MalT; Provisional
Probab=83.99 E-value=5.1 Score=40.99 Aligned_cols=25 Identities=8% Similarity=0.098 Sum_probs=19.4
Q ss_pred cCCCeEEEcCCCCCchHHHHHHHHh
Q psy4493 37 LKKDAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 37 ~~~~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
..+-.++.+|.|+|||..+..++..
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~ 55 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAG 55 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh
Confidence 3445778889999999888777643
No 418
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=83.96 E-value=4.8 Score=38.90 Aligned_cols=16 Identities=6% Similarity=0.229 Sum_probs=13.4
Q ss_pred CCcceEEEeccccccc
Q psy4493 136 GCLARIAIDEVHCCSS 151 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~ 151 (323)
.+++++|||++|.+..
T Consensus 376 ~~~DLLlIDDIq~l~g 391 (617)
T PRK14086 376 REMDILLVDDIQFLED 391 (617)
T ss_pred hcCCEEEEehhccccC
Confidence 4689999999998854
No 419
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=83.81 E-value=7.9 Score=27.50 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=30.6
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCe-EEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~-v~~~h~~~~ 274 (323)
++.+++|||.+-..+...+..|...|++ +..+.||+.
T Consensus 60 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 60 KGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 6678999999988888889999999984 777777753
No 420
>KOG1016|consensus
Probab=83.71 E-value=2.7 Score=41.20 Aligned_cols=84 Identities=12% Similarity=-0.001 Sum_probs=63.5
Q ss_pred CCcEEEEeCChhHHHHHHHHHHhCCCeE------------------EeecCCCCCCc---------------------ce
Q psy4493 239 NQSGIIYTTSIKECEDLREELRNRGLRV------------------SAYHAKLESNV---------------------SI 279 (323)
Q Consensus 239 ~~~~iVF~~s~~~~~~l~~~L~~~~~~v------------------~~~h~~~~~~~---------------------T~ 279 (323)
+.++|||..+...-..+.+.|.++.+.| .-+.|..+..+ |.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 5688999988888888888887652211 11222222222 78
Q ss_pred eeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 280 ~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+...|||+-..+.+|.+|..+++.-=.|-+-|+-|.|+...|-
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~Kpcf 841 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCF 841 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCcee
Confidence 8889999998999999999999999999999999999987763
No 421
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=83.58 E-value=5.3 Score=34.16 Aligned_cols=16 Identities=6% Similarity=0.152 Sum_probs=13.4
Q ss_pred cCCCeEEEcCCCCCch
Q psy4493 37 LKKDAIIIMPTDYPWS 52 (323)
Q Consensus 37 ~~~~~~~~~~tg~gkt 52 (323)
.++++++..|+|.|||
T Consensus 104 ~~~nl~l~G~~G~GKT 119 (254)
T COG1484 104 RGENLVLLGPPGVGKT 119 (254)
T ss_pred cCCcEEEECCCCCcHH
Confidence 5667888889999998
No 422
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=83.53 E-value=4.9 Score=35.60 Aligned_cols=86 Identities=14% Similarity=0.100 Sum_probs=53.7
Q ss_pred CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh----hhhhcCeeeeccCCCeeEEEEc
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----LLKKKKICLMTESSSLKLLYVS 115 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs----~l~~~~i~l~~~~~~~~vii~T 115 (323)
-..+..|+|+|||.-....+.+ ....+..++++...++ .....|+++ .++++..
T Consensus 57 iteI~G~~GsGKTtLaL~~~~~----------------~~~~g~~v~yId~E~~~~~~~a~~lGvd~------~~l~v~~ 114 (321)
T TIGR02012 57 IIEIYGPESSGKTTLALHAIAE----------------AQKAGGTAAFIDAEHALDPVYARKLGVDI------DNLLVSQ 114 (321)
T ss_pred EEEEECCCCCCHHHHHHHHHHH----------------HHHcCCcEEEEcccchhHHHHHHHcCCCH------HHeEEec
Confidence 3556779999999765555543 1235667777766555 445556542 2567777
Q ss_pred ccccccchhHHHHHHHHHhhCCcceEEEecccccc
Q psy4493 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCS 150 (323)
Q Consensus 116 p~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~ 150 (323)
|.... .....+........+++||||-+-.+.
T Consensus 115 p~~~e---q~l~~~~~li~~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 115 PDTGE---QALEIAETLVRSGAVDIIVVDSVAALV 146 (321)
T ss_pred CCCHH---HHHHHHHHHhhccCCcEEEEcchhhhc
Confidence 76543 223344444444689999999988664
No 423
>PF13871 Helicase_C_4: Helicase_C-like
Probab=83.50 E-value=1.3 Score=38.25 Aligned_cols=31 Identities=16% Similarity=-0.116 Sum_probs=26.9
Q ss_pred CccEEEEccCCCCHhHHHHHhccCCCCCCCC
Q psy4493 289 NVRFVIHHCLSKSMENFYQVSIAFGLGKHSF 319 (323)
Q Consensus 289 ~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g 319 (323)
.-+.-|...+|++....+|..||+.|.|+..
T Consensus 87 r~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~ 117 (278)
T PF13871_consen 87 RRRVHITLELPWSADKAIQQFGRTHRSNQVS 117 (278)
T ss_pred CceEEEEeeCCCCHHHHHHHhcccccccccc
Confidence 3556678889999999999999999999865
No 424
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=83.47 E-value=2.5 Score=37.49 Aligned_cols=39 Identities=15% Similarity=0.068 Sum_probs=28.3
Q ss_pred CCCChhHHHHHHHHhc-CCCeEEEcCCCCCchHHHHHHHH
Q psy4493 22 TDFRPNQLAAINIALL-KKDAIIIMPTDYPWSDRVRSVLK 60 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~-~~~~~~~~~tg~gkt~~~~~~l~ 60 (323)
..+.+.|.+.+..... ++++++..+||+|||..+...+.
T Consensus 127 g~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~ 166 (323)
T PRK13833 127 KIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIA 166 (323)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHH
Confidence 3466778877766554 66788888999999987755543
No 425
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=83.34 E-value=2.9 Score=34.95 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=16.6
Q ss_pred EEEcCCCCCchHHHHHHHHh
Q psy4493 42 IIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 42 ~~~~~tg~gkt~~~~~~l~~ 61 (323)
++.++.|+|||..+.+.+..
T Consensus 2 vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 2 VVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred EEEcCCCCCHHHHHHHHHHh
Confidence 67889999999887777765
No 426
>KOG0349|consensus
Probab=83.25 E-value=0.44 Score=43.10 Aligned_cols=47 Identities=17% Similarity=0.109 Sum_probs=39.1
Q ss_pred CCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 46 ~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
...+|--..+..+... +.|.-|+.+|.++||.++.|.+++..|.||+
T Consensus 4 f~e~gv~pel~~a~~e-~dw~lptdvqaeaiplilgggdvlmaaetgs 50 (725)
T KOG0349|consen 4 FEEFGVLPELGMATDE-LDWTLPTDVQAEAIPLILGGGDVLMAAETGS 50 (725)
T ss_pred hHhhCcchHhhhhhhh-hccccccccccccccEEecCCcEEEEeccCC
Confidence 3445555566666655 8999999999999999999999999999999
No 427
>PRK11823 DNA repair protein RadA; Provisional
Probab=83.14 E-value=13 Score=34.75 Aligned_cols=82 Identities=11% Similarity=0.047 Sum_probs=44.1
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh------hhhhcCeeeeccCCCeeEEEE
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK------LLKKKKICLMTESSSLKLLYV 114 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs------~l~~~~i~l~~~~~~~~vii~ 114 (323)
.++..++|.|||.-+...+.. ...++..++++.-..+ .....|... . ++.+.
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~----------------~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~----~--~l~~~ 140 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAAR----------------LAAAGGKVLYVSGEESASQIKLRAERLGLPS----D--NLYLL 140 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHH----------------HHhcCCeEEEEEccccHHHHHHHHHHcCCCh----h--cEEEe
Confidence 556779999999765555433 1124666766654433 222333321 1 23343
Q ss_pred cccccccchhHHHHHHHHHhhCCcceEEEeccccccc
Q psy4493 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 115 Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~ 151 (323)
....+. .+.......+.+++|||+++.+..
T Consensus 141 ~e~~l~-------~i~~~i~~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 141 AETNLE-------AILATIEEEKPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCCHH-------HHHHHHHhhCCCEEEEechhhhcc
Confidence 322221 122222234789999999997753
No 428
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=83.13 E-value=9.6 Score=36.72 Aligned_cols=56 Identities=7% Similarity=0.086 Sum_probs=38.7
Q ss_pred CCChhHHHHHHHHhcC--CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 23 DFRPNQLAAINIALLK--KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 23 ~~~~~Q~~~~~~~~~~--~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
+..|+|++.++..-.. +.+++..+.-.|||+.+..++-... -....+++++.||..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i---------------~~~P~~~l~v~Pt~~ 73 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSI---------------DQDPGPMLYVQPTDD 73 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEE---------------EeCCCCEEEEEEcHH
Confidence 4568899888877654 3577788999999985444432210 013467999999988
No 429
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=83.06 E-value=36 Score=30.88 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=24.2
Q ss_pred ChhHHHHHHHHh----c---CCCeEEEcCCCCCchHHHHHHHHh
Q psy4493 25 RPNQLAAINIAL----L---KKDAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 25 ~~~Q~~~~~~~~----~---~~~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
|+.|...+...+ . ..++++..|||.|||..+...++.
T Consensus 22 Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~ 65 (366)
T COG1474 22 REEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEE 65 (366)
T ss_pred cHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHH
Confidence 555665443332 2 335888899999999776666655
No 430
>PRK12377 putative replication protein; Provisional
Probab=83.00 E-value=9.5 Score=32.51 Aligned_cols=14 Identities=14% Similarity=0.162 Sum_probs=11.9
Q ss_pred CCcceEEEeccccc
Q psy4493 136 GCLARIAIDEVHCC 149 (323)
Q Consensus 136 ~~v~~vVvDEah~~ 149 (323)
.+++++|+||++..
T Consensus 162 ~~~dLLiIDDlg~~ 175 (248)
T PRK12377 162 CKVDLLVLDEIGIQ 175 (248)
T ss_pred cCCCEEEEcCCCCC
Confidence 58999999999654
No 431
>KOG0741|consensus
Probab=82.52 E-value=14 Score=35.02 Aligned_cols=60 Identities=20% Similarity=0.234 Sum_probs=33.3
Q ss_pred hCCcceEEEeccccccccCCCchHHHHh-----HHHHHhh-CCCCCEEEEeecCChhHHHHHHHHhCCCC
Q psy4493 135 AGCLARIAIDEVHCCSSWGHDFRPDYQY-----LSILKTM-FPDVPILGLTATATTKVMLDVQKMLQIED 198 (323)
Q Consensus 135 ~~~v~~vVvDEah~~~~~~~~~r~~~~~-----l~~l~~~-~~~~~~i~lSAT~~~~~~~~i~~~l~~~~ 198 (323)
...+.++|+|+...+.+|. ..-|-|.. |..+... .|.-+.++.=+|-+. ..+.+.+++.+
T Consensus 596 kS~lsiivvDdiErLiD~v-pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~---~~vL~~m~i~~ 661 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYV-PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSR---REVLQEMGILD 661 (744)
T ss_pred cCcceEEEEcchhhhhccc-ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccH---HHHHHHcCHHH
Confidence 3478999999999999874 22232222 2223222 334445555566554 33455555543
No 432
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=82.44 E-value=3.8 Score=41.76 Aligned_cols=112 Identities=13% Similarity=0.057 Sum_probs=61.9
Q ss_pred CCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--------
Q psy4493 22 TDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------- 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------- 93 (323)
++++++-.+.+-.+....--+..|.||-|||- ...+.. .-..+.|+.+-|+...-.
T Consensus 166 W~m~~yDVQliGgivLh~G~IAEM~TGEGKTL--vAtlp~--------------yLnAL~GkgVHvVTVNDYLA~RDaew 229 (1112)
T PRK12901 166 WDMVHYDVQLIGGVVLHQGKIAEMATGEGKTL--VATLPV--------------YLNALTGNGVHVVTVNDYLAKRDSEW 229 (1112)
T ss_pred CCCcccchHHhhhhhhcCCceeeecCCCCchh--HHHHHH--------------HHHHHcCCCcEEEEechhhhhccHHH
Confidence 45666555555555555666889999999992 222221 112346776655433322
Q ss_pred ---hhhhcCeee---e---------ccCCCeeEEEEcccccccchhHHHHHH---HHHhhCCcceEEEecccccc
Q psy4493 94 ---LLKKKKICL---M---------TESSSLKLLYVSPEKLAKSKSFMTKLQ---KMYKAGCLARIAIDEVHCCS 150 (323)
Q Consensus 94 ---~l~~~~i~l---~---------~~~~~~~vii~Tp~~l~~~~~~~~~l~---~~~~~~~v~~vVvDEah~~~ 150 (323)
...-+|+.. . ...=.+||.++|..-+-.. -+++.+. .......+.+.||||+|.++
T Consensus 230 mgply~fLGLsvg~i~~~~~~~~~rr~aY~~DItYgTn~EfGFD-YLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 230 MGPLYEFHGLSVDCIDKHQPNSEARRKAYNADITYGTNNEFGFD-YLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred HHHHHHHhCCceeecCCCCCCHHHHHHhCCCcceecCCCccccc-cchhccccchHhhhCcCCceeEeechhhhh
Confidence 333344442 1 1113579999998766421 1111111 11234568899999999775
No 433
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=82.38 E-value=2.4 Score=29.56 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=32.2
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCe-EEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~-v~~~h~~~~ 274 (323)
++.+++|||.+-..+..++..|...|+. +..+.|++.
T Consensus 55 ~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 55 KDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 6689999999999999999999999986 888888764
No 434
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.23 E-value=2.6 Score=39.34 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=28.5
Q ss_pred CCCChhHHHHHHHHhcCCC--eEEEcCCCCCchHHHHHHHHh
Q psy4493 22 TDFRPNQLAAINIALLKKD--AIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~--~~~~~~tg~gkt~~~~~~l~~ 61 (323)
-++.+.|...+........ +++..|||+|||..+-.+|..
T Consensus 240 Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ 281 (500)
T COG2804 240 LGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSE 281 (500)
T ss_pred hCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 3456677777766665544 445669999999888777766
No 435
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=82.21 E-value=14 Score=31.02 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=17.4
Q ss_pred HHHHHHHHhhCCcceEEEeccccccc
Q psy4493 126 MTKLQKMYKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 126 ~~~l~~~~~~~~v~~vVvDEah~~~~ 151 (323)
...++......++++||||=.+.+..
T Consensus 112 ~~~i~~~~~~~~~~~vvID~l~~l~~ 137 (242)
T cd00984 112 RSRARRLKKEHGLGLIVIDYLQLMSG 137 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCchhcCC
Confidence 33444443444899999999887753
No 436
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=82.14 E-value=36 Score=31.74 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=30.0
Q ss_pred CcceEEEeccccccccCCCchHHHHhHHHHHhhC-CCCCEEEEeecCChhHHHHHHH
Q psy4493 137 CLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF-PDVPILGLTATATTKVMLDVQK 192 (323)
Q Consensus 137 ~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~ 192 (323)
..++||||.+-+... -...+.++..+.... ++..++.++||...+..+....
T Consensus 175 ~~DvVIIDTAGr~~~----d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~ 227 (437)
T PRK00771 175 KADVIIVDTAGRHAL----EEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKA 227 (437)
T ss_pred cCCEEEEECCCcccc----hHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHH
Confidence 348999999965432 122333444444333 4666778888887655444433
No 437
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.34 E-value=20 Score=34.13 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=14.9
Q ss_pred EEEcCCCCCchHHHHHHHHh
Q psy4493 42 IIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 42 ~~~~~tg~gkt~~~~~~l~~ 61 (323)
++..|.|.|||..+....+.
T Consensus 40 Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 40 LFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 78889999999765544433
No 438
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=81.27 E-value=6.3 Score=35.00 Aligned_cols=86 Identities=16% Similarity=0.117 Sum_probs=53.4
Q ss_pred CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh----hhhhcCeeeeccCCCeeEEEEc
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----LLKKKKICLMTESSSLKLLYVS 115 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs----~l~~~~i~l~~~~~~~~vii~T 115 (323)
-..+..|+|.|||.-....+.+ ....+..++++...++ .+...|+++ -++++..
T Consensus 57 iteI~Gp~GsGKTtLal~~~~~----------------~~~~g~~~vyId~E~~~~~~~a~~lGvd~------~~l~v~~ 114 (325)
T cd00983 57 IIEIYGPESSGKTTLALHAIAE----------------AQKLGGTVAFIDAEHALDPVYAKKLGVDL------DNLLISQ 114 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHH----------------HHHcCCCEEEECccccHHHHHHHHcCCCH------HHheecC
Confidence 3556779999999665555543 1235667777777666 555566542 2466666
Q ss_pred ccccccchhHHHHHHHHHhhCCcceEEEecccccc
Q psy4493 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCS 150 (323)
Q Consensus 116 p~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~ 150 (323)
|.... .....+........+++||||-+-.+.
T Consensus 115 p~~~e---q~l~i~~~li~s~~~~lIVIDSvaal~ 146 (325)
T cd00983 115 PDTGE---QALEIADSLVRSGAVDLIVVDSVAALV 146 (325)
T ss_pred CCCHH---HHHHHHHHHHhccCCCEEEEcchHhhc
Confidence 65432 223344444445689999999976554
No 439
>PRK08760 replicative DNA helicase; Provisional
Probab=81.25 E-value=17 Score=34.33 Aligned_cols=52 Identities=25% Similarity=0.347 Sum_probs=28.2
Q ss_pred HHHHHHhhCCcceEEEeccccccccCC-CchH-HHHh----HHHHHhhCCCCCEEEEee
Q psy4493 128 KLQKMYKAGCLARIAIDEVHCCSSWGH-DFRP-DYQY----LSILKTMFPDVPILGLTA 180 (323)
Q Consensus 128 ~l~~~~~~~~v~~vVvDEah~~~~~~~-~~r~-~~~~----l~~l~~~~~~~~~i~lSA 180 (323)
.++.......+++||||=.+.+...+. ..|. .+.. |+.+-..+ ++++|++|-
T Consensus 330 ~~r~l~~~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel-~ipVi~lsQ 387 (476)
T PRK08760 330 KCRRLKREHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKEL-NVPVIALSQ 387 (476)
T ss_pred HHHHHHHhcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHh-CCEEEEeec
Confidence 444433335789999999987753221 1221 2222 22232222 788888874
No 440
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=81.18 E-value=2.1 Score=31.92 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=32.1
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCC--eEEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGL--RVSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~--~v~~~h~~~~ 274 (323)
.+.++++||++-..+...+..|+..|+ ++..+.|++.
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~ 109 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLK 109 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHH
Confidence 568899999998899999999999999 5888888763
No 441
>PRK09354 recA recombinase A; Provisional
Probab=81.11 E-value=8 Score=34.69 Aligned_cols=86 Identities=15% Similarity=0.103 Sum_probs=54.7
Q ss_pred CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh----hhhhcCeeeeccCCCeeEEEEc
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----LLKKKKICLMTESSSLKLLYVS 115 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs----~l~~~~i~l~~~~~~~~vii~T 115 (323)
-..+..|+|+|||.-....+.+ ....|..++++...++ .....|+++ -++++..
T Consensus 62 IteI~G~~GsGKTtLal~~~~~----------------~~~~G~~~~yId~E~s~~~~~a~~lGvdl------d~lli~q 119 (349)
T PRK09354 62 IVEIYGPESSGKTTLALHAIAE----------------AQKAGGTAAFIDAEHALDPVYAKKLGVDI------DNLLVSQ 119 (349)
T ss_pred EEEEECCCCCCHHHHHHHHHHH----------------HHHcCCcEEEECCccchHHHHHHHcCCCH------HHeEEec
Confidence 3556779999999765555544 1235677777777766 555666552 2466777
Q ss_pred ccccccchhHHHHHHHHHhhCCcceEEEecccccc
Q psy4493 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCS 150 (323)
Q Consensus 116 p~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~ 150 (323)
|.... .....+........+++||||=+-.+.
T Consensus 120 p~~~E---q~l~i~~~li~s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 120 PDTGE---QALEIADTLVRSGAVDLIVVDSVAALV 151 (349)
T ss_pred CCCHH---HHHHHHHHHhhcCCCCEEEEeChhhhc
Confidence 76532 223344444445689999999877654
No 442
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=80.90 E-value=12 Score=31.96 Aligned_cols=57 Identities=16% Similarity=0.280 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhh-CCcceEEEeccccccccC--CCchHHHH----hHHHHHhhCCCCCEEEEeec
Q psy4493 124 SFMTKLQKMYKA-GCLARIAIDEVHCCSSWG--HDFRPDYQ----YLSILKTMFPDVPILGLTAT 181 (323)
Q Consensus 124 ~~~~~l~~~~~~-~~v~~vVvDEah~~~~~~--~~~r~~~~----~l~~l~~~~~~~~~i~lSAT 181 (323)
.+.+.++..... .++++||||=.|.+.... ...+..+. .|..+-... +++++++|-.
T Consensus 116 ~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~-~i~vi~~sQl 179 (259)
T PF03796_consen 116 DIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKEL-NIPVIALSQL 179 (259)
T ss_dssp HHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHH-TSEEEEEEEB
T ss_pred HHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHc-CCeEEEcccc
Confidence 334455544333 689999999999887531 12222222 233333322 8888888775
No 443
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=80.65 E-value=32 Score=32.88 Aligned_cols=55 Identities=18% Similarity=0.057 Sum_probs=32.3
Q ss_pred CCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHh
Q psy4493 136 GCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKML 194 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l 194 (323)
.+.++|+||.+=..... ......+..+........++.++++........+.+.+
T Consensus 427 ~~~DLVLIDTaG~s~~D----~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~~f 481 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRD----RALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRF 481 (559)
T ss_pred ccCCEEEecCCCcchhh----HHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHHHH
Confidence 46899999999754221 11222333344433455788899998765555554443
No 444
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=80.52 E-value=8.9 Score=34.11 Aligned_cols=20 Identities=5% Similarity=0.104 Sum_probs=15.2
Q ss_pred CCeEEEcCCCCCchHHHHHH
Q psy4493 39 KDAIIIMPTDYPWSDRVRSV 58 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~ 58 (323)
+++++..|+|.|||..+...
T Consensus 52 ~~~ll~GppG~GKT~la~~i 71 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANII 71 (328)
T ss_pred CcEEEECCCCccHHHHHHHH
Confidence 35888999999999654433
No 445
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=80.47 E-value=4.2 Score=35.18 Aligned_cols=17 Identities=29% Similarity=0.180 Sum_probs=13.5
Q ss_pred hCCcceEEEeccccccc
Q psy4493 135 AGCLARIAIDEVHCCSS 151 (323)
Q Consensus 135 ~~~v~~vVvDEah~~~~ 151 (323)
.+.=+.+.|||.|++..
T Consensus 101 Le~~DVLFIDEIHrl~~ 117 (332)
T COG2255 101 LEEGDVLFIDEIHRLSP 117 (332)
T ss_pred CCcCCeEEEehhhhcCh
Confidence 34567899999999864
No 446
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=80.42 E-value=12 Score=29.48 Aligned_cols=19 Identities=11% Similarity=-0.073 Sum_probs=14.9
Q ss_pred eEEEcCCCCCchHHHHHHH
Q psy4493 41 AIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l 59 (323)
+.+..++|.|||+.+.+..
T Consensus 8 i~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIA 26 (179)
T ss_pred EEEeCCCCccHHHHHHHHH
Confidence 6678899999998765544
No 447
>PRK05595 replicative DNA helicase; Provisional
Probab=80.41 E-value=16 Score=34.04 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=29.8
Q ss_pred HHHHHHHHhhCCcceEEEeccccccccCC-CchH-HHHhH----HHHHhhCCCCCEEEEeec
Q psy4493 126 MTKLQKMYKAGCLARIAIDEVHCCSSWGH-DFRP-DYQYL----SILKTMFPDVPILGLTAT 181 (323)
Q Consensus 126 ~~~l~~~~~~~~v~~vVvDEah~~~~~~~-~~r~-~~~~l----~~l~~~~~~~~~i~lSAT 181 (323)
...++.......+++||||=.+.+...+. ..|. .+..+ +.+-..+ +++++++|-.
T Consensus 300 ~~~~r~~~~~~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~lAke~-~i~vi~lsQL 360 (444)
T PRK05595 300 RSKCRRLKIEHGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKALAKEM-ECPVIALSQL 360 (444)
T ss_pred HHHHHHHHHhcCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHHHHHh-CCeEEEeecc
Confidence 33444433335799999999998863221 1222 22222 2222222 8888888654
No 448
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=80.34 E-value=19 Score=33.34 Aligned_cols=44 Identities=25% Similarity=0.327 Sum_probs=24.6
Q ss_pred CcceEEEeccccccc-cCCCchHHHHh----HHHHHhhCCCCCEEEEeec
Q psy4493 137 CLARIAIDEVHCCSS-WGHDFRPDYQY----LSILKTMFPDVPILGLTAT 181 (323)
Q Consensus 137 ~v~~vVvDEah~~~~-~~~~~r~~~~~----l~~l~~~~~~~~~i~lSAT 181 (323)
.+++||||=.+.+.. .+.+-...+.. |..+-..+ +++++++|-.
T Consensus 305 ~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke~-~i~Vi~lsQl 353 (421)
T TIGR03600 305 GLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKEL-DVPVVLLAQL 353 (421)
T ss_pred CCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHh-CCcEEEeccc
Confidence 699999998888764 12121112222 22222222 7888888754
No 449
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=80.25 E-value=6.6 Score=27.43 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=31.2
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCC-eEEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~v~~~h~~~~ 274 (323)
++.+++|+|++-..+...+..|...|+ ++..+.|++.
T Consensus 55 ~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~ 92 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFE 92 (96)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHH
Confidence 678999999999999999999999987 4777777753
No 450
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=80.01 E-value=3.7 Score=40.07 Aligned_cols=83 Identities=12% Similarity=0.020 Sum_probs=49.5
Q ss_pred HHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee-eeccCCCeeEEEEcccccccchhHHHHHHHHHh
Q psy4493 57 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC-LMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYK 134 (323)
Q Consensus 57 ~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~-l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~ 134 (323)
.+..+.+|+. |+++|..+++.+++|+ ++.+.||+ ......++ +........+.|.||...+. .+..+.+...+.
T Consensus 94 Ea~~R~lg~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA-~qdae~~~~l~~ 169 (656)
T PRK12898 94 EASGRVLGQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLA-ERDAELMRPLYE 169 (656)
T ss_pred HHHHHHhCCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHH-HHHHHHHHHHHh
Confidence 4555566765 5699999999999999 99999999 11111111 01122345788999988874 333334444332
Q ss_pred hCCcceEEE
Q psy4493 135 AGCLARIAI 143 (323)
Q Consensus 135 ~~~v~~vVv 143 (323)
.-.++..++
T Consensus 170 ~lGlsv~~i 178 (656)
T PRK12898 170 ALGLTVGCV 178 (656)
T ss_pred hcCCEEEEE
Confidence 223444433
No 451
>PRK01415 hypothetical protein; Validated
Probab=79.98 E-value=6.5 Score=33.42 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=33.2
Q ss_pred cCCCcEEEEeCChhHHHHHHHHHHhCCCe-EEeecCCCCC
Q psy4493 237 FRNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLES 275 (323)
Q Consensus 237 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~-v~~~h~~~~~ 275 (323)
.++.++++||.+=..|+..+..|.+.|+. |..+.||+..
T Consensus 169 ~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~ 208 (247)
T PRK01415 169 LKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQ 208 (247)
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHH
Confidence 36789999999999999999999999995 7778887543
No 452
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=79.94 E-value=12 Score=31.12 Aligned_cols=21 Identities=0% Similarity=-0.404 Sum_probs=15.2
Q ss_pred CCCeEEEcCCCCCchHHHHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSV 58 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~ 58 (323)
+..+++..++|.|||......
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~ 40 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHF 40 (229)
T ss_pred CeEEEEECCCCCChHHHHHHH
Confidence 455777889999999654433
No 453
>COG1204 Superfamily II helicase [General function prediction only]
Probab=79.73 E-value=1.7 Score=43.34 Aligned_cols=63 Identities=21% Similarity=0.287 Sum_probs=40.9
Q ss_pred CCCCCCCcchHHHHHHHh-cCCcEEEEccchh---hhhhcCeeeeccCCCeeEEEEcccccccchhH
Q psy4493 63 FNLTDFRPNQLAAINIAL-LKKDAIIIMPTGK---LLKKKKICLMTESSSLKLLYVSPEKLAKSKSF 125 (323)
Q Consensus 63 ~g~~~~~~~Q~~~i~~~~-~~~~~lv~~pTgs---~l~~~~i~l~~~~~~~~vii~Tp~~l~~~~~~ 125 (323)
.++.++.+-|+.++.... +++|+++++|||+ .+..+.+-=....++.++++..|-+.+..+.+
T Consensus 27 ~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~ 93 (766)
T COG1204 27 DGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKY 93 (766)
T ss_pred CChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHH
Confidence 677788888888887654 4599999999999 11111000011122568999999988864444
No 454
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=79.47 E-value=3.5 Score=29.02 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=30.8
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~ 274 (323)
++.++++||.+-..+...+..|...|+.+..+.|++.
T Consensus 55 ~~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 55 RGARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 3568999999988888889999999999777788764
No 455
>PF13173 AAA_14: AAA domain
Probab=79.43 E-value=2 Score=32.34 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=18.3
Q ss_pred CCCeEEEcCCCCCchHHHHHHHHh
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
++-+++..|.|.|||.-+...++.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~ 25 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKD 25 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345678889999999877666655
No 456
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=79.27 E-value=1.4 Score=41.02 Aligned_cols=28 Identities=29% Similarity=0.617 Sum_probs=25.6
Q ss_pred CCCCcchHHHHHHHhc----CCcEEEEccchh
Q psy4493 66 TDFRPNQLAAINIALL----KKDAIIIMPTGK 93 (323)
Q Consensus 66 ~~~~~~Q~~~i~~~~~----~~~~lv~~pTgs 93 (323)
-.++++|++|+.++.+ ++..++++|||+
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGa 66 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGA 66 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCC
Confidence 3578999999999988 889999999999
No 457
>KOG1016|consensus
Probab=79.24 E-value=2 Score=42.03 Aligned_cols=30 Identities=10% Similarity=0.019 Sum_probs=22.9
Q ss_pred chhHHHHHHHHHhhCCcceEEEeccccccc
Q psy4493 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 122 ~~~~~~~l~~~~~~~~v~~vVvDEah~~~~ 151 (323)
.+.++.++++....-.-++||.||-|++-.
T Consensus 419 ~qe~~~li~~AL~~PGPDlVICDEGHrIKN 448 (1387)
T KOG1016|consen 419 RQEAYSLIRSALLEPGPDLVICDEGHRIKN 448 (1387)
T ss_pred HHHHHHHHHHHhcCCCCCeEEecCCceecc
Confidence 446677777766666789999999998754
No 458
>KOG0298|consensus
Probab=79.02 E-value=2.7 Score=43.30 Aligned_cols=91 Identities=4% Similarity=-0.195 Sum_probs=61.8
Q ss_pred HHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc--------------ceeeecccccCCccEEE
Q psy4493 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------SIAFGLGIDKPNVRFVI 294 (323)
Q Consensus 229 l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~--------------T~~~~~Gid~~~v~~Vi 294 (323)
+..+++-...-.++|||+.=...-.-+...+.-+++.....-++-+..+ +...+.|+|+-+..+|+
T Consensus 1211 ~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~d~~dc~~~fk~I~clll~~~~~~~GLNL~eA~Hvf 1290 (1394)
T KOG0298|consen 1211 AILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETEDFDDCIICFKSIDCLLLFVSKGSKGLNLIEATHVF 1290 (1394)
T ss_pred HHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCcchhhhhhhcccceEEEEEeccCcccccHHhhhhhh
Confidence 3444443334578899986555444444445444443332222222222 77788999999999999
Q ss_pred EccCCCCHhHHHHHhccCCCCCCCC
Q psy4493 295 HHCLSKSMENFYQVSIAFGLGKHSF 319 (323)
Q Consensus 295 ~~~~p~~~~~~~qr~GR~gR~g~~g 319 (323)
..++-.+...-.|-+||+-|.|++-
T Consensus 1291 l~ePiLN~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1291 LVEPILNPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred eeccccCchHHHhhhhhhhhccccc
Confidence 9998889999999999999999863
No 459
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=78.74 E-value=10 Score=35.88 Aligned_cols=104 Identities=17% Similarity=0.082 Sum_probs=57.3
Q ss_pred HHHHHHHhc-----CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh------hhhh
Q psy4493 29 LAAINIALL-----KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK------LLKK 97 (323)
Q Consensus 29 ~~~~~~~~~-----~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs------~l~~ 97 (323)
...+...+- +.-.++..|+|.|||.-....+. ..+.+|..+++++-.-+ ...+
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~----------------~~~~~ge~~~y~s~eEs~~~i~~~~~~ 312 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLE----------------NACANKERAILFAYEESRAQLLRNAYS 312 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHH----------------HHHHCCCeEEEEEeeCCHHHHHHHHHH
Confidence 344555543 33466777999999965444332 33446666666654333 5556
Q ss_pred cCeeee--ccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccc
Q psy4493 98 KKICLM--TESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCC 149 (323)
Q Consensus 98 ~~i~l~--~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~ 149 (323)
.|+++. ...+...++-.-|.... ...+...+.......+.+.+|||=.-.+
T Consensus 313 lg~~~~~~~~~g~l~~~~~~p~~~~-~~~~~~~i~~~i~~~~~~~vvIDsi~~~ 365 (484)
T TIGR02655 313 WGIDFEEMEQQGLLKIICAYPESAG-LEDHLQIIKSEIADFKPARIAIDSLSAL 365 (484)
T ss_pred cCCChHHHhhCCcEEEEEcccccCC-hHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 666542 22333444443444332 1234444555444457889999987755
No 460
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=78.67 E-value=40 Score=29.74 Aligned_cols=43 Identities=12% Similarity=-0.093 Sum_probs=24.5
Q ss_pred hCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCC
Q psy4493 135 AGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183 (323)
Q Consensus 135 ~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~ 183 (323)
...-+++||||||.+... ....|-......|...++.|.++-+
T Consensus 91 ~~~~kv~iI~~ad~m~~~------a~naLLK~LEepp~~t~~il~~~~~ 133 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQ------AQNAFLKTIEEPPKGVFIILLCENL 133 (313)
T ss_pred cCCceEEEEechhhcCHH------HHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 456789999999988542 1233333334444444555555533
No 461
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=78.62 E-value=4 Score=28.88 Aligned_cols=36 Identities=14% Similarity=-0.000 Sum_probs=29.9
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCC-eEEeecCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKL 273 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~v~~~h~~~ 273 (323)
++.+++++|++-..+...+..|.+.|+ ++..+.|++
T Consensus 53 ~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~ 89 (99)
T cd01527 53 GANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGL 89 (99)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCH
Confidence 567999999998888899999998877 577777775
No 462
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=78.58 E-value=4.6 Score=35.50 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=26.4
Q ss_pred CCChhHHHHHHHHhc-CCCeEEEcCCCCCchHHHHHHH
Q psy4493 23 DFRPNQLAAINIALL-KKDAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 23 ~~~~~Q~~~~~~~~~-~~~~~~~~~tg~gkt~~~~~~l 59 (323)
.+.+.|.+.+..... ++.+++..+||+|||..+...+
T Consensus 116 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~ 153 (299)
T TIGR02782 116 IMTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALL 153 (299)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHH
Confidence 355667776665554 6678888899999997765554
No 463
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=78.47 E-value=1.2 Score=37.88 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=28.5
Q ss_pred CCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceEEEeccc
Q psy4493 106 SSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARIAIDEVH 147 (323)
Q Consensus 106 ~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~vVvDEah 147 (323)
....+|.|+||+++.+ +++. .....++.+||||--|
T Consensus 175 ~~~~~i~vGTP~Rl~k------Lle~~~L~l~~l~~ivlD~s~ 211 (252)
T PF14617_consen 175 KTRVHIAVGTPGRLSK------LLENGALSLSNLKRIVLDWSY 211 (252)
T ss_pred hCCceEEEeChHHHHH------HHHcCCCCcccCeEEEEcCCc
Confidence 4578999999999975 5554 4566789999999765
No 464
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=78.11 E-value=6.8 Score=38.92 Aligned_cols=24 Identities=8% Similarity=0.147 Sum_probs=18.0
Q ss_pred CCCeEEEcCCCCCchHHHHHHHHh
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
+++.+++...|.|||+.+.....+
T Consensus 191 KNNPvLiGEpGVGKTAIvEGLA~r 214 (786)
T COG0542 191 KNNPVLVGEPGVGKTAIVEGLAQR 214 (786)
T ss_pred CCCCeEecCCCCCHHHHHHHHHHH
Confidence 457889999999999765554433
No 465
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=78.00 E-value=4.8 Score=35.70 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=27.2
Q ss_pred CCChhHHHHHHHHh-cCCCeEEEcCCCCCchHHHHHHHH
Q psy4493 23 DFRPNQLAAINIAL-LKKDAIIIMPTDYPWSDRVRSVLK 60 (323)
Q Consensus 23 ~~~~~Q~~~~~~~~-~~~~~~~~~~tg~gkt~~~~~~l~ 60 (323)
.+.+.|.+.+.... .++.++++.+||+|||..+...+.
T Consensus 132 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~ 170 (319)
T PRK13894 132 IMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIIN 170 (319)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHH
Confidence 35567878776554 467788889999999966555443
No 466
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=77.99 E-value=2.4 Score=33.84 Aligned_cols=68 Identities=25% Similarity=0.414 Sum_probs=43.4
Q ss_pred CCCCCCCcchHHHHHHHhcC-CcEEEEccchh---h-hhhcCeeeeccCCCeeEEEEcccccccchhHHHHHHH
Q psy4493 63 FNLTDFRPNQLAAINIALLK-KDAIIIMPTGK---L-LKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQK 131 (323)
Q Consensus 63 ~g~~~~~~~Q~~~i~~~~~~-~~~lv~~pTgs---~-l~~~~i~l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~ 131 (323)
+++..+++.|.+++..+... +.+++..|||+ . +...-...........++|.+|..-+. ..+...+..
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~-~~~~~~~~~ 76 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELA-EQWAEELKK 76 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHH-HHHHHHHHH
Confidence 56788999999999999998 99999999999 0 111100101111235788899955442 234444443
No 467
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=77.96 E-value=7.2 Score=27.72 Aligned_cols=37 Identities=8% Similarity=0.149 Sum_probs=31.0
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCe-EEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~-v~~~h~~~~ 274 (323)
++.++++||++-..+...+..|.+.|+. +..+.|++.
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~ 94 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGID 94 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHH
Confidence 4689999999988889999999999884 777888754
No 468
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=77.88 E-value=2.9 Score=41.66 Aligned_cols=85 Identities=8% Similarity=0.019 Sum_probs=53.5
Q ss_pred CCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchhhhhhcCee
Q psy4493 22 TDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC 101 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs~l~~~~i~ 101 (323)
..+.+.|++++.. ...+++|.+..|+|||..+..-+..+. +.. -....+++++.-|.....++.-+
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li--------~~~----~v~p~~IL~lTFTnkAA~em~~R 68 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLL--------SVE----NASPHSIMAVTFTNKAAAEMRHR 68 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHH--------HcC----CCCHHHeEeeeccHHHHHHHHHH
Confidence 4688999998864 356799999999999988776665421 000 01235699999998843333222
Q ss_pred eec--cCCCeeEEEEcccccc
Q psy4493 102 LMT--ESSSLKLLYVSPEKLA 120 (323)
Q Consensus 102 l~~--~~~~~~vii~Tp~~l~ 120 (323)
+.. ......+.|+|-..+.
T Consensus 69 l~~~~~~~~~~~~i~TfHs~~ 89 (715)
T TIGR01075 69 IGALLGTSARGMWIGTFHGLA 89 (715)
T ss_pred HHHHhcccccCcEEEcHHHHH
Confidence 200 0112357788887775
No 469
>PRK10436 hypothetical protein; Provisional
Probab=77.65 E-value=3.9 Score=38.30 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=27.0
Q ss_pred CCChhHHHHHHHHhcCC--CeEEEcCCCCCchHHHHHHHHh
Q psy4493 23 DFRPNQLAAINIALLKK--DAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~--~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
++.+.|.+.++...... -+++..|||+|||..+-.+|..
T Consensus 201 G~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~ 241 (462)
T PRK10436 201 GMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQT 241 (462)
T ss_pred CcCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHh
Confidence 45667777777665433 3666779999999887665544
No 470
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=77.38 E-value=4.6 Score=29.34 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=30.3
Q ss_pred CCCcEEEEeCCh--hHHHHHHHHHHhCCCeEEeecCCCC
Q psy4493 238 RNQSGIIYTTSI--KECEDLREELRNRGLRVSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~--~~~~~l~~~L~~~~~~v~~~h~~~~ 274 (323)
++.+++|||++- ..+...+..|...|+++..+.|++.
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~ 101 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLD 101 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHH
Confidence 568999999875 4778889999999998888888753
No 471
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=77.19 E-value=14 Score=33.97 Aligned_cols=84 Identities=12% Similarity=0.293 Sum_probs=42.2
Q ss_pred CCCeeEEEEcccccccchhHHHHHHH-----H-HhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCC-CCCEEEE
Q psy4493 106 SSSLKLLYVSPEKLAKSKSFMTKLQK-----M-YKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP-DVPILGL 178 (323)
Q Consensus 106 ~~~~~vii~Tp~~l~~~~~~~~~l~~-----~-~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~-~~~~i~l 178 (323)
..+..+++.|.+.+.. .+...++. + ..- ++++++||.++.+.... .....+ ...+-.... +.|+++.
T Consensus 141 ~~~a~v~y~~se~f~~--~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~gk~-~~qeef--Fh~FN~l~~~~kqIvlt 214 (408)
T COG0593 141 GPNARVVYLTSEDFTN--DFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAGKE-RTQEEF--FHTFNALLENGKQIVLT 214 (408)
T ss_pred CCCceEEeccHHHHHH--HHHHHHHhhhHHHHHHhh-ccCeeeechHhHhcCCh-hHHHHH--HHHHHHHHhcCCEEEEE
Confidence 3456788888877642 22222221 0 111 78999999999886532 112222 111222222 3466655
Q ss_pred eecCChhH---HHHHHHHhC
Q psy4493 179 TATATTKV---MLDVQKMLQ 195 (323)
Q Consensus 179 SAT~~~~~---~~~i~~~l~ 195 (323)
|-.+|.+. ..++.+.+.
T Consensus 215 sdr~P~~l~~~~~rL~SR~~ 234 (408)
T COG0593 215 SDRPPKELNGLEDRLRSRLE 234 (408)
T ss_pred cCCCchhhccccHHHHHHHh
Confidence 55555443 244555543
No 472
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=76.39 E-value=5.3 Score=34.40 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=27.3
Q ss_pred CCChhHHHHHHHHhc-CC-CeEEEcCCCCCchHHHHHHHHh
Q psy4493 23 DFRPNQLAAINIALL-KK-DAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 23 ~~~~~Q~~~~~~~~~-~~-~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
++.+.|.+.++.... .+ -+++..|||+|||..+...+..
T Consensus 63 g~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 63 GLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhh
Confidence 456778887776654 33 3667779999999877666543
No 473
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=76.19 E-value=4.5 Score=32.65 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=26.9
Q ss_pred CCCCChhHHHHHHHHhc-CCCeEEEcCCCCCchHHHHH
Q psy4493 21 LTDFRPNQLAAINIALL-KKDAIIIMPTDYPWSDRVRS 57 (323)
Q Consensus 21 ~~~~~~~Q~~~~~~~~~-~~~~~~~~~tg~gkt~~~~~ 57 (323)
...+.+.|.+.++.... +..++++.|||+|||..+..
T Consensus 7 ~g~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~a 44 (186)
T cd01130 7 QGTFSPLQAAYLWLAVEARKNILISGGTGSGKTTLLNA 44 (186)
T ss_pred cCCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHH
Confidence 34556778888876665 56677888999999976544
No 474
>PLN02955 8-amino-7-oxononanoate synthase
Probab=76.12 E-value=11 Score=35.30 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=22.1
Q ss_pred EEeCChhHHHHHHHHHHhCCCeEEeec
Q psy4493 244 IYTTSIKECEDLREELRNRGLRVSAYH 270 (323)
Q Consensus 244 VF~~s~~~~~~l~~~L~~~~~~v~~~h 270 (323)
|++.+...+..+++.|.++|+-+..+.
T Consensus 398 I~ig~~~~a~~~~~~L~~~Gi~v~~i~ 424 (476)
T PLN02955 398 LVVGNQEKALKASRYLLKSGFHVMAIR 424 (476)
T ss_pred EEeCCHHHHHHHHHHHHHCCCEEEEEC
Confidence 667888999999999999998765544
No 475
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=75.58 E-value=5.2 Score=28.97 Aligned_cols=37 Identities=16% Similarity=0.094 Sum_probs=30.5
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCe--EEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLR--VSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~--v~~~h~~~~ 274 (323)
++.+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~ 103 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQ 103 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHH
Confidence 4578999999988888889999999984 777888763
No 476
>KOG2036|consensus
Probab=75.50 E-value=39 Score=33.21 Aligned_cols=41 Identities=17% Similarity=0.015 Sum_probs=28.3
Q ss_pred ceeeecccccCCccEEEEccCCC--CHhHHHHHhccCCCCCCC
Q psy4493 278 SIAFGLGIDKPNVRFVIHHCLSK--SMENFYQVSIAFGLGKHS 318 (323)
Q Consensus 278 T~~~~~Gid~~~v~~Vi~~~~p~--~~~~~~qr~GR~gR~g~~ 318 (323)
+.+-..+-++|++-+||+..+-. +..+-.+-.+|+-|++.+
T Consensus 552 ~PVd~~~~~iPdvlcviQv~lEG~isr~si~~sL~~G~~a~Gd 594 (1011)
T KOG2036|consen 552 GPVDPSQNAIPDVLCVIQVCLEGRISRQSIENSLRRGKRAAGD 594 (1011)
T ss_pred cCcCcccCCCCcceEEEEEeecceecHHHHHHHHhccccccCC
Confidence 33334455899999999987654 455577778887777653
No 477
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=75.31 E-value=12 Score=32.87 Aligned_cols=18 Identities=6% Similarity=0.073 Sum_probs=14.0
Q ss_pred CCeEEEcCCCCCchHHHH
Q psy4493 39 KDAIIIMPTDYPWSDRVR 56 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~ 56 (323)
.++++..|.|.|||.-+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358889999999995443
No 478
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=75.23 E-value=6.1 Score=40.26 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=41.6
Q ss_pred HHHHHHhcCCCCCCCcchHHHHH----HHhcCCcEEEEccchh-hhhhcCee-e-eccCCCeeEEEEcccccccchhH
Q psy4493 55 VRSVLKSKFNLTDFRPNQLAAIN----IALLKKDAIIIMPTGK-LLKKKKIC-L-MTESSSLKLLYVSPEKLAKSKSF 125 (323)
Q Consensus 55 ~~~~l~~~~g~~~~~~~Q~~~i~----~~~~~~~~lv~~pTgs-~l~~~~i~-l-~~~~~~~~vii~Tp~~l~~~~~~ 125 (323)
+...+.. .|++ +|+.|.+.+. ++.+++++++.||||+ .-...-++ + ... ...+|+|+||.+.+..+.+
T Consensus 235 ~~~~~~~-~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~~~~vvi~t~t~~Lq~Ql~ 309 (850)
T TIGR01407 235 FSKNIDR-LGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-TEKPVVISTNTKVLQSQLL 309 (850)
T ss_pred HHHhhhh-cCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHH
Confidence 3344433 5666 7899998665 4556789999999999 11111111 0 111 2348999999888754433
No 479
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=75.12 E-value=49 Score=27.80 Aligned_cols=22 Identities=9% Similarity=-0.109 Sum_probs=15.3
Q ss_pred CCCeEEEcCCCCCchHHHHHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l 59 (323)
+...++..|+|.|||......+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l 42 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFL 42 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 4456778899999996544333
No 480
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=75.03 E-value=1.8 Score=34.36 Aligned_cols=59 Identities=22% Similarity=0.342 Sum_probs=35.7
Q ss_pred CCCcchHHHHHHHhc-------CCcEEEEccchh--hhhhcCeeeeccCCCeeEEEEcccccccchhHHHHH
Q psy4493 67 DFRPNQLAAINIALL-------KKDAIIIMPTGK--LLKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKL 129 (323)
Q Consensus 67 ~~~~~Q~~~i~~~~~-------~~~~lv~~pTgs--~l~~~~i~l~~~~~~~~vii~Tp~~l~~~~~~~~~l 129 (323)
.|+++|.+++..+.. .+++++.+|||+ ..-...+...... .+++.+|..-+ ..++...+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~---~~l~~~p~~~l-~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR---KVLIVAPNISL-LEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC---EEEEEESSHHH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc---ceeEecCHHHH-HHHHHHHH
Confidence 468899999998874 578999999999 1111111100001 78888888554 23444444
No 481
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=74.92 E-value=6.7 Score=26.67 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=30.9
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCC-eEEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~v~~~h~~~~ 274 (323)
++.+++++|++...+...+..|.+.|+ ++..+-|++.
T Consensus 49 ~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 49 KDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 678999999998899999999999875 4667777764
No 482
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=74.89 E-value=9.8 Score=29.38 Aligned_cols=38 Identities=8% Similarity=-0.060 Sum_probs=32.0
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCC-eEEeecCCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKLES 275 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~v~~~h~~~~~ 275 (323)
.+.+++|+|.+-..+...+..|...|+ ++..+.|++..
T Consensus 48 ~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~a 86 (145)
T cd01535 48 AAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTAA 86 (145)
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHHH
Confidence 567899999998888888999998887 68888888543
No 483
>KOG1513|consensus
Probab=74.74 E-value=3.2 Score=40.85 Aligned_cols=82 Identities=13% Similarity=0.229 Sum_probs=47.6
Q ss_pred ccCCCeeEEEEccccccc-----chhHHHHHHHHH---hhCCcceEEEecccccccc----CCCchHHHHhHHHHHhhCC
Q psy4493 104 TESSSLKLLYVSPEKLAK-----SKSFMTKLQKMY---KAGCLARIAIDEVHCCSSW----GHDFRPDYQYLSILKTMFP 171 (323)
Q Consensus 104 ~~~~~~~vii~Tp~~l~~-----~~~~~~~l~~~~---~~~~v~~vVvDEah~~~~~----~~~~r~~~~~l~~l~~~~~ 171 (323)
+...+--|+++|-..|.. +.+++.+++... -..-=++||+||||..-.- +-.-...=..+-.|+..+|
T Consensus 364 n~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP 443 (1300)
T KOG1513|consen 364 NTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP 443 (1300)
T ss_pred cCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCC
Confidence 334456799999877753 223444444321 1112257899999976430 0001111133456888889
Q ss_pred CCCEEEEeecCChh
Q psy4493 172 DVPILGLTATATTK 185 (323)
Q Consensus 172 ~~~~i~lSAT~~~~ 185 (323)
+.+++.-|||=..+
T Consensus 444 ~ARVVYASATGAsE 457 (1300)
T KOG1513|consen 444 NARVVYASATGASE 457 (1300)
T ss_pred CceEEEeeccCCCC
Confidence 99999999995543
No 484
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=74.64 E-value=5.6 Score=27.82 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=28.7
Q ss_pred CCCcEEEEeCC--hhHHHHHHHHHHhCCC-eEEeecCCCC
Q psy4493 238 RNQSGIIYTTS--IKECEDLREELRNRGL-RVSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s--~~~~~~l~~~L~~~~~-~v~~~h~~~~ 274 (323)
++.+++|||.+ +..+...+..|.+.|+ ++..+.|++.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 36789999998 4557788889998887 5777777764
No 485
>PRK05636 replicative DNA helicase; Provisional
Probab=74.56 E-value=34 Score=32.56 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=28.5
Q ss_pred HHHHHHhhCCcceEEEeccccccccCC-CchH-HHHh----HHHHHhhCCCCCEEEEee
Q psy4493 128 KLQKMYKAGCLARIAIDEVHCCSSWGH-DFRP-DYQY----LSILKTMFPDVPILGLTA 180 (323)
Q Consensus 128 ~l~~~~~~~~v~~vVvDEah~~~~~~~-~~r~-~~~~----l~~l~~~~~~~~~i~lSA 180 (323)
..+.......+++||||=.+.+..... ..|. .+.. |+.+-..+ ++++|++|-
T Consensus 366 ~~r~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel-~ipVi~lsQ 423 (505)
T PRK05636 366 KARRLKQKHDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLAKEL-DVPLIAISQ 423 (505)
T ss_pred HHHHHHHhcCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHHHHHh-CCeEEEEee
Confidence 344433335799999999998853211 1222 1222 22232222 889998874
No 486
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=74.33 E-value=5 Score=38.72 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=28.0
Q ss_pred CCCChhHHHHHHHHhcCC--CeEEEcCCCCCchHHHHHHHHh
Q psy4493 22 TDFRPNQLAAINIALLKK--DAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~--~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
-++.+.|.+.+....... -+++..|||+|||..+...+..
T Consensus 298 lg~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~ 339 (564)
T TIGR02538 298 LGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNI 339 (564)
T ss_pred cCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHh
Confidence 446677888777665433 3556779999999887666543
No 487
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=74.30 E-value=4.6 Score=40.28 Aligned_cols=85 Identities=9% Similarity=-0.014 Sum_probs=53.3
Q ss_pred CCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchhhhhhcCee
Q psy4493 22 TDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC 101 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs~l~~~~i~ 101 (323)
..+.+.|++++.. ...+++|.+..|+|||..+..-+..+. +. .-....+++++.-|.....++.-+
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li--------~~----~~v~p~~IL~lTFT~kAA~Em~~R 73 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLM--------QV----ENASPYSIMAVTFTNKAAAEMRHR 73 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHH--------Hc----CCCChhHeEeeeccHHHHHHHHHH
Confidence 4588999998873 246799999999999988776665421 00 011346799999998843333222
Q ss_pred eec--cCCCeeEEEEcccccc
Q psy4493 102 LMT--ESSSLKLLYVSPEKLA 120 (323)
Q Consensus 102 l~~--~~~~~~vii~Tp~~l~ 120 (323)
+.. ......+.|+|-..+.
T Consensus 74 l~~~~~~~~~~~~i~TfHs~~ 94 (721)
T PRK11773 74 IEQLLGTSQGGMWVGTFHGLA 94 (721)
T ss_pred HHHHhccCCCCCEEEcHHHHH
Confidence 100 0112356788887775
No 488
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=73.98 E-value=10 Score=27.67 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=30.3
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCC-eEEeecCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKL 273 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~v~~~h~~~ 273 (323)
++.++++||++-..+...+..|...|+ ++..+-|++
T Consensus 77 ~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 113 (118)
T cd01449 77 PDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW 113 (118)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH
Confidence 567999999998888899999999998 477777765
No 489
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=73.60 E-value=5.1 Score=28.68 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=30.7
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCe-EEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~-v~~~h~~~~ 274 (323)
++.+++|||++-..+...+..|...|++ +..+.|++.
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH
Confidence 4679999999988888999999999984 777777753
No 490
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=73.50 E-value=40 Score=32.67 Aligned_cols=45 Identities=18% Similarity=0.266 Sum_probs=31.3
Q ss_pred cHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHH
Q psy4493 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVR 56 (323)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~ 56 (323)
..++.+.|+..|+...+.+.- ++. ++.|.-+...|--=|||-.++
T Consensus 176 a~r~~~~lk~~Fdi~~~s~~~---l~~-FKQkaTVFLVPRRHGKTWf~V 220 (668)
T PHA03372 176 ANRVLEYLLHVFDIEFLSESS---LNI-FKQKATVFLVPRRHGKTWFII 220 (668)
T ss_pred HHHHHHHHHHHcCCcccCHHH---HHH-hhccceEEEecccCCceehHH
Confidence 346788999999999988733 333 335555666688889994433
No 491
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=73.48 E-value=52 Score=30.47 Aligned_cols=57 Identities=18% Similarity=0.053 Sum_probs=33.3
Q ss_pred hCCcceEEEeccccccccCCCchHHHHhHHHHHhhC-CCCCEEEEeecCChhHHHHHHHHhC
Q psy4493 135 AGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF-PDVPILGLTATATTKVMLDVQKMLQ 195 (323)
Q Consensus 135 ~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~ 195 (323)
..+.+.+.||.+=+... .......+..+.... +...++.++||...+...++...+.
T Consensus 267 l~~~d~VLIDTaGrsqr----d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~ 324 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQR----DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ 324 (420)
T ss_pred hcCCCEEEecCCCCCcc----hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc
Confidence 35678999998632211 112234444443322 2345778999988877777666653
No 492
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=73.41 E-value=3.9 Score=29.03 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=29.4
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCe-EEeecCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKL 273 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~-v~~~h~~~ 273 (323)
++.+++|||.+-..+...+..|...|+. +..+.|++
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~ 96 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGF 96 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcH
Confidence 5678999998877788889999988875 77777765
No 493
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=73.29 E-value=5.7 Score=29.84 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=30.3
Q ss_pred CCCcEEEEeC-ChhHHHHHHHHHHhCCCeEEeecCCCC
Q psy4493 238 RNQSGIIYTT-SIKECEDLREELRNRGLRVSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~-s~~~~~~l~~~L~~~~~~v~~~h~~~~ 274 (323)
++.+++|||+ +-..+...+..|+..|+++..+.||+.
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~ 122 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYK 122 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHH
Confidence 5688999997 456777888888888999888888864
No 494
>PRK06321 replicative DNA helicase; Provisional
Probab=72.81 E-value=33 Score=32.36 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhCCcceEEEeccccccccCC----Cch-HHHHhH----HHHHhhCCCCCEEEEeec
Q psy4493 125 FMTKLQKMYKAGCLARIAIDEVHCCSSWGH----DFR-PDYQYL----SILKTMFPDVPILGLTAT 181 (323)
Q Consensus 125 ~~~~l~~~~~~~~v~~vVvDEah~~~~~~~----~~r-~~~~~l----~~l~~~~~~~~~i~lSAT 181 (323)
+...++.......+++||||=.+.+...+. .-| ..+..+ +.+-..+ ++++|++|-.
T Consensus 324 i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~LK~lAkel-~vpVi~lsQL 388 (472)
T PRK06321 324 LRARARRMKESYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRMLKNLAREL-NIPILCLSQL 388 (472)
T ss_pred HHHHHHHHHHhcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHHHHHHHHHh-CCcEEEEeec
Confidence 333444443345799999999988753221 112 222222 1121122 8899988764
No 495
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=72.53 E-value=12 Score=26.86 Aligned_cols=37 Identities=11% Similarity=0.129 Sum_probs=30.1
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCe-EEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~-v~~~h~~~~ 274 (323)
.+.+++|+|.+-..+...+..|+..|+. +..+.|++.
T Consensus 57 ~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T PRK00162 57 FDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFE 94 (108)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHH
Confidence 5678999999988888899999999885 667777653
No 496
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=72.13 E-value=6.5 Score=37.14 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=28.1
Q ss_pred CCCChhHHHHHHHHhcCCC--eEEEcCCCCCchHHHHHHHHh
Q psy4493 22 TDFRPNQLAAINIALLKKD--AIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~--~~~~~~tg~gkt~~~~~~l~~ 61 (323)
-++.+.|.+.+........ +++..|||+|||..+...+..
T Consensus 224 Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~ 265 (486)
T TIGR02533 224 LGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSR 265 (486)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhc
Confidence 3456778887777665433 456779999999887666544
No 497
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=71.84 E-value=24 Score=32.58 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=34.4
Q ss_pred CCcceEEEeccccccccCCCchHHHHhHHHHHhhC----CCCCEEEEeecCChhHHHHHHHHhC
Q psy4493 136 GCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF----PDVPILGLTATATTKVMLDVQKMLQ 195 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~----~~~~~i~lSAT~~~~~~~~i~~~l~ 195 (323)
...++|+||=+-.... -......+..+.... +...++.+|||...+....+.+.+.
T Consensus 298 ~~~D~VLIDTaGr~~r----d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~ 357 (432)
T PRK12724 298 DGSELILIDTAGYSHR----NLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYE 357 (432)
T ss_pred CCCCEEEEeCCCCCcc----CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhc
Confidence 4789999997664422 123344444444432 2346788999999876666666543
No 498
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=71.19 E-value=38 Score=34.64 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=12.7
Q ss_pred CCcceEEEeccccccc
Q psy4493 136 GCLARIAIDEVHCCSS 151 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~ 151 (323)
...++|++||++.+..
T Consensus 667 ~p~svvllDEieka~~ 682 (852)
T TIGR03345 667 KPYSVVLLDEVEKAHP 682 (852)
T ss_pred CCCcEEEEechhhcCH
Confidence 4678999999997643
No 499
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=71.16 E-value=64 Score=27.70 Aligned_cols=122 Identities=11% Similarity=-0.024 Sum_probs=61.7
Q ss_pred CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--hhhhcCeeeeccCCCeeEEEEccc
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--LLKKKKICLMTESSSLKLLYVSPE 117 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l~~~~i~l~~~~~~~~vii~Tp~ 117 (323)
..++..|+|.||..-+....+..+ ..+.+ .|+|. ..... .....+|+.+..|+
T Consensus 9 A~Lf~G~~G~G~~~lA~~~A~~ll----------------C~~~~----~~Cg~C~sC~~i-----~~~~HPDl~~i~p~ 63 (261)
T PRK05818 9 PLLLIERKGSFLKPFLYEYLTSIV----------------CTKAN----GFCKTCESCLKI-----LNGKYNDFYLIFDQ 63 (261)
T ss_pred ceeeeCCCCCcHHHHHHHHHHHHc----------------CCCCC----CCCCCCHHHHHH-----hcCCCCCEEEecCC
Confidence 456788999999865444443311 11111 24443 11111 12345667776665
Q ss_pred cc-ccchhHHHHHHHHH----hhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHH
Q psy4493 118 KL-AKSKSFMTKLQKMY----KAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQK 192 (323)
Q Consensus 118 ~l-~~~~~~~~~l~~~~----~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~ 192 (323)
.- ..-...++..+... ..+..+++|||+||.|... ....|-.+....|.-.+++|.++-+..+...+.+
T Consensus 64 ~~~I~id~ir~l~~~l~~~s~e~~~~KV~II~~ae~m~~~------AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~S 137 (261)
T PRK05818 64 KNPIKKEDALSIINKLNRPSVESNGKKIYIIYGIEKLNKQ------SANSLLKLIEEPPKNTYGIFTTRNENNILNTILS 137 (261)
T ss_pred cccCCHHHHHHHHHHHccCchhcCCCEEEEeccHhhhCHH------HHHHHHHhhcCCCCCeEEEEEECChHhCchHhhh
Confidence 31 11223344443321 1235789999999998652 2233433444445445555666545444444443
No 500
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=70.43 E-value=19 Score=34.31 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=51.9
Q ss_pred CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh------hhhhcCeeeec--cCCCe
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK------LLKKKKICLMT--ESSSL 109 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs------~l~~~~i~l~~--~~~~~ 109 (323)
+...++..++|.|||......+.+ .+.+|..++++.-..+ .+...|.++.. ..+..
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~----------------~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l 336 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEA----------------ACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLL 336 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH----------------HHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCc
Confidence 334566779999999665544432 2456777777765544 44455655311 12223
Q ss_pred eEEEEcccccccchhHHHHHHHHHhhCCcceEEEecccccc
Q psy4493 110 KLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCS 150 (323)
Q Consensus 110 ~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~ 150 (323)
.++..-|.... ...+...+.......+.+++|||=.-.+.
T Consensus 337 ~i~~~~~~~~~-~~~~~~~i~~~i~~~~~~~vVIDslt~l~ 376 (509)
T PRK09302 337 KIICARPESYG-LEDHLIIIKREIEEFKPSRVAIDPLSALA 376 (509)
T ss_pred eeecCCcccCC-HHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 33333333221 11223334443334578899999887654
Done!