Query psy4493
Match_columns 323
No_of_seqs 173 out of 1783
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 18:29:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4493.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4493hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1x_A ATP-dependent DNA helic 100.0 2.5E-52 8.6E-57 395.4 30.8 300 4-322 25-368 (591)
2 1oyw_A RECQ helicase, ATP-depe 100.0 1.1E-48 3.9E-53 366.7 25.5 289 5-322 7-337 (523)
3 2db3_A ATP-dependent RNA helic 100.0 1.1E-42 3.9E-47 319.8 25.3 285 7-322 63-401 (434)
4 2i4i_A ATP-dependent RNA helic 100.0 6.5E-41 2.2E-45 306.8 22.4 301 5-322 20-377 (417)
5 3sqw_A ATP-dependent RNA helic 100.0 3E-40 1E-44 314.3 26.5 290 8-322 29-392 (579)
6 3i5x_A ATP-dependent RNA helic 100.0 2.5E-40 8.6E-45 314.2 24.1 289 9-322 81-443 (563)
7 3eiq_A Eukaryotic initiation f 100.0 7.3E-41 2.5E-45 306.1 19.3 290 5-322 45-381 (414)
8 3pey_A ATP-dependent RNA helic 100.0 4.3E-40 1.5E-44 298.9 23.8 290 5-322 10-350 (395)
9 1xti_A Probable ATP-dependent 100.0 3.5E-40 1.2E-44 299.3 22.9 289 5-322 13-351 (391)
10 3fht_A ATP-dependent RNA helic 100.0 9.4E-40 3.2E-44 298.4 24.1 291 5-322 30-373 (412)
11 1s2m_A Putative ATP-dependent 100.0 8.1E-40 2.8E-44 297.9 23.1 288 5-322 26-359 (400)
12 2j0s_A ATP-dependent RNA helic 100.0 2.4E-40 8.3E-45 302.4 18.2 286 8-322 45-377 (410)
13 1hv8_A Putative ATP-dependent 100.0 1.6E-38 5.5E-43 285.7 25.5 286 5-322 11-339 (367)
14 3fmp_B ATP-dependent RNA helic 100.0 3.1E-40 1.1E-44 307.7 11.0 289 6-322 98-440 (479)
15 1fuu_A Yeast initiation factor 100.0 9.9E-40 3.4E-44 296.6 12.4 290 5-322 26-360 (394)
16 2z0m_A 337AA long hypothetical 100.0 2.5E-38 8.4E-43 281.3 19.7 273 8-322 2-317 (337)
17 3fho_A ATP-dependent RNA helic 100.0 4.8E-38 1.6E-42 294.4 14.3 276 20-322 138-464 (508)
18 3oiy_A Reverse gyrase helicase 100.0 4.5E-38 1.5E-42 287.9 13.7 279 10-322 9-359 (414)
19 2va8_A SSO2462, SKI2-type heli 100.0 3E-35 1E-39 286.4 25.6 282 5-322 13-402 (715)
20 2zj8_A DNA helicase, putative 100.0 8.5E-36 2.9E-40 290.4 19.6 284 4-322 5-381 (720)
21 2p6r_A Afuhel308 helicase; pro 100.0 7.3E-36 2.5E-40 290.0 17.8 282 8-322 11-382 (702)
22 3l9o_A ATP-dependent RNA helic 100.0 6.1E-35 2.1E-39 292.8 18.8 273 21-322 182-591 (1108)
23 2xgj_A ATP-dependent RNA helic 100.0 5.3E-34 1.8E-38 283.8 21.5 277 16-322 80-493 (1010)
24 4a4z_A Antiviral helicase SKI2 100.0 1.8E-34 6.1E-39 287.1 17.6 273 16-319 33-481 (997)
25 2ykg_A Probable ATP-dependent 100.0 8.5E-34 2.9E-38 275.8 19.6 279 17-322 7-510 (696)
26 4a2p_A RIG-I, retinoic acid in 100.0 2.5E-33 8.5E-38 265.5 22.3 275 21-322 5-502 (556)
27 4ddu_A Reverse gyrase; topoiso 100.0 5.5E-34 1.9E-38 285.8 17.0 255 11-300 67-388 (1104)
28 1wp9_A ATP-dependent RNA helic 100.0 6.4E-32 2.2E-36 251.1 26.4 273 23-322 9-469 (494)
29 1gm5_A RECG; helicase, replica 100.0 5.6E-33 1.9E-37 268.7 18.0 275 5-322 351-691 (780)
30 4gl2_A Interferon-induced heli 100.0 1.4E-34 4.6E-39 281.5 5.9 78 239-316 400-509 (699)
31 3tbk_A RIG-I helicase domain; 100.0 9.9E-33 3.4E-37 261.2 17.2 274 22-322 3-501 (555)
32 4a2q_A RIG-I, retinoic acid in 100.0 6.1E-32 2.1E-36 265.7 22.9 279 17-322 242-743 (797)
33 2eyq_A TRCF, transcription-rep 100.0 6.7E-32 2.3E-36 272.3 23.6 275 5-322 586-916 (1151)
34 1tf5_A Preprotein translocase 100.0 1.3E-31 4.4E-36 255.5 22.0 286 12-322 73-539 (844)
35 2jlq_A Serine protease subunit 100.0 1.2E-32 4.1E-37 253.9 13.2 254 21-322 2-305 (451)
36 1gku_B Reverse gyrase, TOP-RG; 100.0 1.9E-33 6.5E-38 281.9 8.0 251 10-299 45-352 (1054)
37 4a2w_A RIG-I, retinoic acid in 100.0 1.9E-31 6.3E-36 265.3 21.1 281 19-322 244-743 (936)
38 4f92_B U5 small nuclear ribonu 100.0 1.1E-31 3.7E-36 278.1 19.0 285 17-318 72-461 (1724)
39 2xau_A PRE-mRNA-splicing facto 100.0 4.1E-31 1.4E-35 257.0 20.1 284 5-322 77-437 (773)
40 4f92_B U5 small nuclear ribonu 100.0 9.7E-32 3.3E-36 278.4 16.6 276 20-322 923-1302(1724)
41 3o8b_A HCV NS3 protease/helica 100.0 1.2E-32 4E-37 260.0 7.8 238 25-320 219-507 (666)
42 3h1t_A Type I site-specific re 100.0 1.3E-30 4.5E-35 248.6 21.5 279 22-317 177-545 (590)
43 2fwr_A DNA repair protein RAD2 100.0 7.9E-31 2.7E-35 243.7 17.1 254 23-318 93-441 (472)
44 2oca_A DAR protein, ATP-depend 100.0 3.3E-30 1.1E-34 241.8 17.1 263 22-321 112-448 (510)
45 1yks_A Genome polyprotein [con 100.0 1.3E-30 4.5E-35 239.3 13.6 243 35-322 5-293 (440)
46 2z83_A Helicase/nucleoside tri 100.0 2.7E-30 9.2E-35 238.6 15.7 243 33-322 16-307 (459)
47 2fsf_A Preprotein translocase 100.0 3E-29 1E-33 238.7 18.6 102 221-322 422-577 (853)
48 2whx_A Serine protease/ntpase/ 100.0 2.8E-30 9.7E-35 245.4 10.6 254 25-322 173-472 (618)
49 2wv9_A Flavivirin protease NS2 100.0 7.6E-30 2.6E-34 244.0 12.7 257 23-322 215-527 (673)
50 1nkt_A Preprotein translocase 100.0 1.7E-28 5.7E-33 234.0 20.6 287 11-322 100-611 (922)
51 3dmq_A RNA polymerase-associat 100.0 2.9E-28 9.8E-33 242.8 22.6 277 22-322 152-607 (968)
52 2v6i_A RNA helicase; membrane, 100.0 7.7E-29 2.6E-33 227.1 15.1 242 37-321 1-283 (431)
53 1z63_A Helicase of the SNF2/RA 99.9 4.8E-27 1.6E-31 219.8 19.0 271 22-321 36-444 (500)
54 3rc3_A ATP-dependent RNA helic 99.9 5.5E-28 1.9E-32 230.6 12.5 230 33-318 150-432 (677)
55 3mwy_W Chromo domain-containin 99.9 1.9E-24 6.5E-29 212.2 18.7 272 22-320 235-674 (800)
56 1z3i_X Similar to RAD54-like; 99.9 2.2E-23 7.4E-28 200.0 17.5 84 238-321 415-519 (644)
57 3jux_A Protein translocase sub 99.9 2.2E-22 7.5E-27 188.4 21.9 145 174-322 411-581 (822)
58 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 3.6E-22 1.2E-26 198.2 17.0 266 22-318 270-695 (1038)
59 2hjv_A ATP-dependent RNA helic 99.9 2.5E-22 8.5E-27 159.6 11.8 115 205-322 4-136 (163)
60 2jgn_A DBX, DDX3, ATP-dependen 99.9 8.7E-22 3E-26 159.6 12.2 114 207-322 16-147 (185)
61 3fe2_A Probable ATP-dependent 99.9 2.1E-21 7.2E-26 164.4 13.6 179 5-204 34-237 (242)
62 1t5i_A C_terminal domain of A 99.9 7.1E-22 2.4E-26 158.3 9.7 100 222-322 15-132 (172)
63 3iuy_A Probable ATP-dependent 99.9 2.6E-21 9E-26 162.3 13.4 176 6-201 26-225 (228)
64 1q0u_A Bstdead; DEAD protein, 99.9 3.6E-21 1.2E-25 160.4 13.9 178 5-209 9-216 (219)
65 3eaq_A Heat resistant RNA depe 99.9 4.5E-22 1.6E-26 164.8 8.0 101 221-322 14-132 (212)
66 2p6n_A ATP-dependent RNA helic 99.9 1E-21 3.5E-26 159.9 9.8 111 208-322 27-155 (191)
67 2rb4_A ATP-dependent RNA helic 99.9 1.5E-21 5.2E-26 156.9 10.3 112 209-322 6-141 (175)
68 2d7d_A Uvrabc system protein B 99.9 3.9E-21 1.3E-25 184.3 14.8 96 226-322 431-550 (661)
69 1c4o_A DNA nucleotide excision 99.9 3.3E-21 1.1E-25 184.9 13.7 173 137-322 325-544 (664)
70 3dkp_A Probable ATP-dependent 99.8 1.4E-20 4.7E-25 159.6 15.2 172 6-204 35-240 (245)
71 1vec_A ATP-dependent RNA helic 99.8 3.1E-20 1E-24 153.2 16.9 167 4-195 7-200 (206)
72 1fuk_A Eukaryotic initiation f 99.8 2.3E-21 7.7E-26 154.4 8.5 97 225-322 17-131 (165)
73 3ly5_A ATP-dependent RNA helic 99.8 8.4E-21 2.9E-25 162.5 12.4 169 7-195 61-255 (262)
74 3bor_A Human initiation factor 99.8 2E-20 6.9E-25 157.8 13.6 173 5-203 35-233 (237)
75 3ber_A Probable ATP-dependent 99.8 3.7E-20 1.2E-24 157.3 15.1 170 5-203 48-246 (249)
76 2pl3_A Probable ATP-dependent 99.8 4.2E-20 1.4E-24 155.7 14.6 177 5-204 30-232 (236)
77 1qde_A EIF4A, translation init 99.8 6.7E-20 2.3E-24 153.2 15.5 173 5-203 19-215 (224)
78 2gxq_A Heat resistant RNA depe 99.8 3.2E-20 1.1E-24 153.1 13.1 177 4-203 5-204 (207)
79 3i32_A Heat resistant RNA depe 99.8 8.7E-21 3E-25 164.5 9.2 99 223-322 13-129 (300)
80 2oxc_A Probable ATP-dependent 99.8 4.8E-20 1.7E-24 154.8 13.0 173 5-203 29-227 (230)
81 2yjt_D ATP-dependent RNA helic 99.7 6.9E-22 2.4E-26 158.1 0.0 99 223-322 15-131 (170)
82 1t6n_A Probable ATP-dependent 99.8 1.1E-19 3.9E-24 151.4 12.6 172 5-202 19-218 (220)
83 3fmo_B ATP-dependent RNA helic 99.8 1.4E-19 4.6E-24 157.9 13.6 172 6-203 98-296 (300)
84 1wrb_A DJVLGB; RNA helicase, D 99.8 5.5E-20 1.9E-24 156.7 10.1 183 7-204 30-239 (253)
85 2ipc_A Preprotein translocase 99.8 1.9E-17 6.4E-22 158.1 20.7 115 11-150 68-215 (997)
86 3llm_A ATP-dependent RNA helic 99.6 4E-15 1.4E-19 125.0 14.2 143 23-195 61-228 (235)
87 3b6e_A Interferon-induced heli 99.6 3E-15 1E-19 123.9 11.1 148 17-181 27-216 (216)
88 1z5z_A Helicase of the SNF2/RA 99.6 1.3E-15 4.5E-20 130.3 5.9 99 223-321 95-215 (271)
89 2fz4_A DNA repair protein RAD2 99.6 1.9E-14 6.4E-19 121.0 12.7 129 22-186 92-232 (237)
90 1rif_A DAR protein, DNA helica 99.5 2.6E-14 8.9E-19 123.4 10.2 132 22-186 112-266 (282)
91 2vl7_A XPD; helicase, unknown 99.5 8.2E-13 2.8E-17 124.1 20.3 60 238-300 383-463 (540)
92 3crv_A XPD/RAD3 related DNA he 99.3 1.5E-10 5.2E-15 109.0 19.5 122 173-300 316-473 (551)
93 1w36_D RECD, exodeoxyribonucle 98.2 8.6E-06 3E-10 77.3 11.9 70 10-93 136-207 (608)
94 3fe2_A Probable ATP-dependent 97.9 3.5E-05 1.2E-09 64.3 8.2 97 44-142 29-135 (242)
95 1vec_A ATP-dependent RNA helic 97.9 2.5E-05 8.7E-10 63.3 7.2 84 46-131 5-93 (206)
96 3ber_A Probable ATP-dependent 97.9 3.4E-05 1.2E-09 64.7 8.1 96 45-142 44-144 (249)
97 1q0u_A Bstdead; DEAD protein, 97.9 6E-05 2.1E-09 61.8 9.1 84 46-131 6-94 (219)
98 1t6n_A Probable ATP-dependent 97.9 4.1E-05 1.4E-09 62.7 8.0 85 45-131 15-104 (220)
99 1qde_A EIF4A, translation init 97.8 5.1E-05 1.7E-09 62.3 8.0 87 44-132 14-105 (224)
100 3bor_A Human initiation factor 97.8 4.9E-05 1.7E-09 63.2 7.9 87 44-132 30-121 (237)
101 2oxc_A Probable ATP-dependent 97.8 8.6E-05 3E-09 61.4 8.5 85 45-131 25-114 (230)
102 2pl3_A Probable ATP-dependent 97.8 7.6E-05 2.6E-09 61.9 8.1 86 45-132 26-120 (236)
103 3dkp_A Probable ATP-dependent 97.7 5.9E-05 2E-09 62.9 7.2 81 50-132 35-121 (245)
104 3iuy_A Probable ATP-dependent 97.7 9.1E-05 3.1E-09 61.1 7.7 81 49-131 25-116 (228)
105 3upu_A ATP-dependent DNA helic 97.7 0.0003 1E-08 64.4 11.7 60 19-94 21-86 (459)
106 2gxq_A Heat resistant RNA depe 97.7 9.7E-05 3.3E-09 59.8 7.5 84 46-131 3-94 (207)
107 2v1x_A ATP-dependent DNA helic 97.7 0.00013 4.5E-09 69.0 9.2 82 46-131 23-106 (591)
108 2db3_A ATP-dependent RNA helic 97.7 8E-05 2.7E-09 67.8 7.5 86 45-132 57-152 (434)
109 3fmo_B ATP-dependent RNA helic 97.6 0.00012 4.1E-09 63.2 7.5 84 46-131 94-184 (300)
110 1wrb_A DJVLGB; RNA helicase, D 97.6 7.1E-05 2.4E-09 62.8 5.3 85 46-132 25-123 (253)
111 4b3f_X DNA-binding protein smu 97.6 9.2E-05 3.2E-09 70.9 6.5 56 22-93 188-244 (646)
112 3pey_A ATP-dependent RNA helic 97.6 0.00019 6.6E-09 63.9 8.2 87 44-132 5-98 (395)
113 2j0s_A ATP-dependent RNA helic 97.5 0.00025 8.5E-09 63.7 8.0 86 45-132 38-128 (410)
114 3ly5_A ATP-dependent RNA helic 97.5 0.00023 7.7E-09 60.1 7.2 80 51-132 61-149 (262)
115 1s2m_A Putative ATP-dependent 97.5 0.00018 6E-09 64.5 6.8 85 46-132 23-112 (400)
116 3e1s_A Exodeoxyribonuclease V, 97.5 7.1E-05 2.4E-09 70.4 4.2 58 22-95 188-245 (574)
117 2i4i_A ATP-dependent RNA helic 97.4 0.00032 1.1E-08 63.1 7.9 95 45-141 16-133 (417)
118 1fuu_A Yeast initiation factor 97.4 0.0003 1E-08 62.7 7.6 87 44-132 21-112 (394)
119 1xti_A Probable ATP-dependent 97.4 0.00023 7.9E-09 63.4 6.4 84 46-131 10-98 (391)
120 4a15_A XPD helicase, ATP-depen 97.3 0.00067 2.3E-08 64.5 9.1 119 174-300 377-527 (620)
121 2gk6_A Regulator of nonsense t 97.3 0.00099 3.4E-08 63.5 10.1 56 22-93 179-235 (624)
122 1hv8_A Putative ATP-dependent 97.3 0.0003 1E-08 61.9 6.1 93 46-140 8-105 (367)
123 1oyw_A RECQ helicase, ATP-depe 97.3 0.00027 9.1E-09 65.9 5.9 82 46-130 4-86 (523)
124 2z0m_A 337AA long hypothetical 97.3 0.00068 2.3E-08 58.9 8.2 76 52-132 2-79 (337)
125 3fht_A ATP-dependent RNA helic 97.3 0.00053 1.8E-08 61.5 7.5 86 44-131 25-117 (412)
126 3eiq_A Eukaryotic initiation f 97.3 0.00062 2.1E-08 61.1 7.7 87 44-132 40-131 (414)
127 3fmp_B ATP-dependent RNA helic 97.2 0.00038 1.3E-08 64.1 5.7 84 46-131 94-184 (479)
128 3sqw_A ATP-dependent RNA helic 97.1 0.00089 3E-08 63.2 7.0 79 51-131 28-117 (579)
129 3i5x_A ATP-dependent RNA helic 96.9 0.0013 4.3E-08 61.8 6.8 79 51-131 79-168 (563)
130 3hgt_A HDA1 complex subunit 3; 96.9 0.0033 1.1E-07 54.1 8.6 93 222-316 110-221 (328)
131 3oiy_A Reverse gyrase helicase 96.7 0.00073 2.5E-08 60.9 3.2 75 54-131 9-86 (414)
132 3lfu_A DNA helicase II; SF1 he 96.3 0.15 5E-06 48.6 16.5 57 22-93 8-65 (647)
133 2ykg_A Probable ATP-dependent 96.0 0.011 3.9E-07 56.8 7.2 83 58-143 5-95 (696)
134 3fho_A ATP-dependent RNA helic 96.0 0.0024 8.2E-08 59.2 2.2 83 48-132 123-212 (508)
135 1gm5_A RECG; helicase, replica 95.8 0.0025 8.7E-08 62.0 1.3 123 4-132 309-440 (780)
136 2zj8_A DNA helicase, putative 95.6 0.0064 2.2E-07 58.9 3.5 75 46-121 3-81 (720)
137 2p6r_A Afuhel308 helicase; pro 95.6 0.008 2.7E-07 58.1 4.1 70 51-121 10-81 (702)
138 4a15_A XPD helicase, ATP-depen 95.5 0.015 5.2E-07 55.2 5.7 56 23-93 3-62 (620)
139 2b8t_A Thymidine kinase; deoxy 95.5 0.07 2.4E-06 43.5 8.9 86 41-150 15-102 (223)
140 2chg_A Replication factor C sm 95.4 0.098 3.4E-06 41.8 9.7 56 1-59 1-59 (226)
141 2va8_A SSO2462, SKI2-type heli 95.4 0.0081 2.8E-07 58.1 3.6 75 46-121 10-88 (715)
142 4a2q_A RIG-I, retinoic acid in 95.4 0.03 1E-06 54.9 7.6 81 62-143 243-330 (797)
143 4ddu_A Reverse gyrase; topoiso 95.4 0.011 3.7E-07 59.9 4.5 73 55-131 67-143 (1104)
144 2orw_A Thymidine kinase; TMTK, 95.4 0.032 1.1E-06 44.1 6.3 38 38-91 3-40 (184)
145 2o0j_A Terminase, DNA packagin 95.3 0.28 9.6E-06 43.4 12.7 57 23-93 163-219 (385)
146 1xx6_A Thymidine kinase; NESG, 95.1 0.043 1.5E-06 43.6 6.4 36 41-92 11-46 (191)
147 2zpa_A Uncharacterized protein 95.1 0.043 1.5E-06 52.0 7.2 113 23-183 175-289 (671)
148 1gku_B Reverse gyrase, TOP-RG; 95.0 0.018 6E-07 58.2 4.6 73 55-132 46-122 (1054)
149 3tbk_A RIG-I helicase domain; 94.9 0.058 2E-06 50.0 7.7 76 67-143 4-86 (555)
150 4a2p_A RIG-I, retinoic acid in 94.9 0.048 1.6E-06 50.7 7.0 78 63-142 3-88 (556)
151 1a5t_A Delta prime, HOLB; zinc 94.8 0.082 2.8E-06 46.0 7.7 21 41-61 27-47 (334)
152 4a2w_A RIG-I, retinoic acid in 94.6 0.064 2.2E-06 53.5 7.3 81 62-144 243-331 (936)
153 1tf5_A Preprotein translocase 94.3 0.043 1.5E-06 53.3 5.1 80 60-143 77-158 (844)
154 2j9r_A Thymidine kinase; TK1, 94.2 0.2 6.8E-06 40.4 8.2 35 43-93 33-67 (214)
155 2wjy_A Regulator of nonsense t 94.1 0.091 3.1E-06 51.3 7.2 57 22-93 355-411 (800)
156 2xzl_A ATP-dependent helicase 93.9 0.094 3.2E-06 51.3 6.8 57 22-93 359-415 (802)
157 2xgj_A ATP-dependent RNA helic 93.8 0.058 2E-06 54.1 5.2 69 60-131 80-151 (1010)
158 3e2i_A Thymidine kinase; Zn-bi 93.8 0.45 1.5E-05 38.3 9.4 102 41-177 31-133 (219)
159 1g5t_A COB(I)alamin adenosyltr 93.5 1.1 3.8E-05 35.5 11.1 126 38-184 28-164 (196)
160 4a4z_A Antiviral helicase SKI2 93.2 0.11 3.7E-06 52.2 6.0 67 62-131 35-104 (997)
161 3cpe_A Terminase, DNA packagin 93.2 0.63 2.2E-05 43.8 10.9 56 23-93 163-219 (592)
162 3l9o_A ATP-dependent RNA helic 93.0 0.044 1.5E-06 55.6 2.9 66 65-131 182-249 (1108)
163 3vkw_A Replicase large subunit 93.0 0.06 2.1E-06 48.5 3.4 81 41-150 164-247 (446)
164 3b6e_A Interferon-induced heli 92.7 0.072 2.5E-06 42.6 3.3 68 64-131 30-105 (216)
165 1nkt_A Preprotein translocase 92.2 0.14 4.7E-06 50.0 5.0 83 57-143 102-186 (922)
166 1njg_A DNA polymerase III subu 92.2 0.25 8.4E-06 39.9 6.0 36 25-60 28-67 (250)
167 2ipc_A Preprotein translocase 92.2 0.16 5.3E-06 49.7 5.3 63 56-121 69-133 (997)
168 1jr3_A DNA polymerase III subu 91.6 0.51 1.8E-05 41.2 7.8 21 41-61 41-61 (373)
169 1w4r_A Thymidine kinase; type 91.5 0.44 1.5E-05 37.8 6.4 38 38-91 20-57 (195)
170 3u61_B DNA polymerase accessor 91.5 0.82 2.8E-05 39.1 8.8 14 137-150 105-118 (324)
171 2eyq_A TRCF, transcription-rep 91.5 0.26 8.9E-06 50.2 6.3 82 48-131 585-674 (1151)
172 3gk5_A Uncharacterized rhodane 91.3 0.33 1.1E-05 34.3 5.1 46 229-274 45-90 (108)
173 2oca_A DAR protein, ATP-depend 90.6 0.13 4.3E-06 47.4 2.8 65 66-131 112-179 (510)
174 1sxj_A Activator 1 95 kDa subu 90.4 1.9 6.4E-05 39.8 10.6 43 137-183 148-190 (516)
175 2kjq_A DNAA-related protein; s 90.3 2.5 8.6E-05 31.6 9.5 20 37-56 35-54 (149)
176 3syl_A Protein CBBX; photosynt 90.3 4.7 0.00016 33.9 12.4 17 40-56 69-85 (309)
177 2p65_A Hypothetical protein PF 89.9 0.61 2.1E-05 35.9 6.0 35 25-59 27-64 (187)
178 2fsf_A Preprotein translocase 89.0 0.31 1.1E-05 47.3 4.1 62 57-121 65-128 (853)
179 2fwr_A DNA repair protein RAD2 88.6 0.27 9.1E-06 44.8 3.4 61 67-131 93-155 (472)
180 1rif_A DAR protein, DNA helica 88.5 0.22 7.7E-06 41.9 2.6 64 67-131 113-179 (282)
181 1iqp_A RFCS; clamp loader, ext 88.4 2.2 7.4E-05 36.2 8.9 34 26-59 31-67 (327)
182 3g5j_A Putative ATP/GTP bindin 88.2 0.65 2.2E-05 33.9 4.7 37 238-274 87-125 (134)
183 3n70_A Transport activator; si 88.2 4.1 0.00014 30.1 9.3 17 37-53 23-39 (145)
184 1l8q_A Chromosomal replication 88.1 2.1 7.3E-05 36.5 8.7 18 39-56 38-55 (324)
185 3bos_A Putative DNA replicatio 88.0 1.5 5.2E-05 35.2 7.4 21 38-58 52-72 (242)
186 2dr3_A UPF0273 protein PH0284; 87.8 5.4 0.00018 32.1 10.7 23 38-60 23-45 (247)
187 2orv_A Thymidine kinase; TP4A 87.7 1.4 4.7E-05 35.9 6.7 36 41-92 22-57 (234)
188 1sxj_B Activator 1 37 kDa subu 87.5 3.4 0.00012 34.9 9.6 36 25-60 26-64 (323)
189 2q6t_A DNAB replication FORK h 87.3 5.5 0.00019 35.8 11.2 26 126-151 299-324 (444)
190 2jtq_A Phage shock protein E; 87.2 1.7 5.8E-05 28.8 6.0 37 238-275 40-77 (85)
191 1xp8_A RECA protein, recombina 87.0 4.4 0.00015 35.5 10.0 86 40-150 76-165 (366)
192 3flh_A Uncharacterized protein 86.9 0.67 2.3E-05 33.6 4.1 46 228-273 60-107 (124)
193 1sxj_C Activator 1 40 kDa subu 86.8 2.6 8.8E-05 36.3 8.5 20 41-60 49-68 (340)
194 3foj_A Uncharacterized protein 86.6 0.63 2.2E-05 32.2 3.7 36 238-273 55-90 (100)
195 4a1f_A DNAB helicase, replicat 86.5 2.1 7.2E-05 37.1 7.6 56 125-181 143-205 (338)
196 2w0m_A SSO2452; RECA, SSPF, un 86.4 5.2 0.00018 31.8 9.7 22 38-59 23-44 (235)
197 3eme_A Rhodanese-like domain p 86.0 0.64 2.2E-05 32.4 3.4 36 238-273 55-90 (103)
198 1gmx_A GLPE protein; transfera 85.8 1 3.6E-05 31.6 4.5 36 238-273 57-93 (108)
199 4gl2_A Interferon-induced heli 85.8 0.33 1.1E-05 46.6 2.3 116 67-184 7-193 (699)
200 2z4s_A Chromosomal replication 85.7 4.8 0.00016 36.2 9.9 15 137-151 194-208 (440)
201 1wp9_A ATP-dependent RNA helic 85.6 1 3.6E-05 40.4 5.6 64 67-132 9-75 (494)
202 3h4m_A Proteasome-activating n 85.4 5.9 0.0002 32.9 9.9 18 38-55 51-68 (285)
203 2iut_A DNA translocase FTSK; n 85.3 2.7 9.3E-05 39.1 8.1 24 38-61 214-237 (574)
204 2r6a_A DNAB helicase, replicat 85.3 5.5 0.00019 35.9 10.2 25 127-151 303-327 (454)
205 3iwh_A Rhodanese-like domain p 85.0 0.77 2.6E-05 32.2 3.4 36 238-273 55-90 (103)
206 3vfd_A Spastin; ATPase, microt 84.9 5.3 0.00018 35.1 9.7 17 38-54 148-164 (389)
207 1wv9_A Rhodanese homolog TT165 83.6 1.1 3.7E-05 30.6 3.7 35 240-274 54-88 (94)
208 3pvs_A Replication-associated 83.6 1.6 5.6E-05 39.4 5.8 17 135-151 104-120 (447)
209 3crv_A XPD/RAD3 related DNA he 83.6 0.91 3.1E-05 42.3 4.2 53 67-121 3-60 (551)
210 2fz4_A DNA repair protein RAD2 83.5 0.57 1.9E-05 38.4 2.5 28 66-93 92-119 (237)
211 1sxj_D Activator 1 41 kDa subu 83.2 5.7 0.00019 34.0 9.1 32 28-59 45-79 (353)
212 1d2n_A N-ethylmaleimide-sensit 82.8 10 0.00036 31.1 10.2 15 136-150 123-137 (272)
213 3pfi_A Holliday junction ATP-d 82.3 8.3 0.00028 32.9 9.7 17 39-55 56-72 (338)
214 3llm_A ATP-dependent RNA helic 82.3 0.64 2.2E-05 37.9 2.3 55 67-121 61-122 (235)
215 2qz4_A Paraplegin; AAA+, SPG7, 82.1 16 0.00055 29.6 11.1 17 38-54 39-55 (262)
216 3hix_A ALR3790 protein; rhodan 81.9 1.3 4.5E-05 31.0 3.6 36 238-273 51-87 (106)
217 1xwi_A SKD1 protein; VPS4B, AA 81.6 22 0.00075 30.2 12.0 16 39-54 46-61 (322)
218 3bh0_A DNAB-like replicative h 80.6 8.7 0.0003 32.7 9.1 26 126-151 168-195 (315)
219 2zan_A Vacuolar protein sortin 80.4 10 0.00034 34.1 9.8 16 39-54 168-183 (444)
220 2fsx_A RV0390, COG0607: rhodan 80.1 2.1 7.1E-05 32.0 4.4 37 238-274 79-116 (148)
221 3nhv_A BH2092 protein; alpha-b 79.7 1.6 5.5E-05 32.5 3.6 37 238-274 71-109 (144)
222 1qvr_A CLPB protein; coiled co 79.4 5.2 0.00018 39.3 8.1 22 38-59 191-212 (854)
223 3eie_A Vacuolar protein sortin 79.1 21 0.00072 30.2 11.1 16 39-54 52-67 (322)
224 1qxn_A SUD, sulfide dehydrogen 78.5 1.6 5.6E-05 32.2 3.3 37 238-274 81-118 (137)
225 2k0z_A Uncharacterized protein 78.4 2.6 8.9E-05 29.6 4.3 38 238-275 55-92 (110)
226 1r6b_X CLPA protein; AAA+, N-t 78.2 4.1 0.00014 39.4 6.9 34 25-58 191-227 (758)
227 1u94_A RECA protein, recombina 77.9 8.8 0.0003 33.4 8.3 87 39-150 64-154 (356)
228 3h1t_A Type I site-specific re 77.8 1.6 5.6E-05 40.8 3.8 54 67-120 178-247 (590)
229 2zr9_A Protein RECA, recombina 77.7 8.1 0.00028 33.5 8.0 96 30-150 47-152 (349)
230 1tq1_A AT5G66040, senescence-a 77.4 1.7 5.7E-05 31.7 3.1 36 238-273 81-117 (129)
231 1uaa_A REP helicase, protein ( 77.1 2.2 7.6E-05 40.7 4.6 56 23-93 2-58 (673)
232 2zts_A Putative uncharacterize 76.5 11 0.00038 30.2 8.2 53 128-181 126-181 (251)
233 2hhg_A Hypothetical protein RP 76.3 1.8 6.1E-05 31.9 3.0 37 238-274 85-122 (139)
234 3hr8_A Protein RECA; alpha and 76.2 8.3 0.00028 33.6 7.6 96 30-150 47-152 (356)
235 2jlq_A Serine protease subunit 75.7 0.48 1.6E-05 43.0 -0.5 57 64-121 1-61 (451)
236 3d8b_A Fidgetin-like protein 1 75.3 22 0.00076 30.6 10.3 18 38-55 117-134 (357)
237 3d1p_A Putative thiosulfate su 75.0 2.3 7.7E-05 31.3 3.2 36 238-273 90-126 (139)
238 3bgw_A DNAB-like replicative h 74.8 23 0.00079 31.8 10.4 56 125-181 296-359 (444)
239 3kl4_A SRP54, signal recogniti 74.7 21 0.00071 31.9 10.0 47 136-186 178-227 (433)
240 2qp9_X Vacuolar protein sortin 74.6 30 0.001 29.8 10.9 17 39-55 85-101 (355)
241 3io5_A Recombination and repai 74.6 7.6 0.00026 33.3 6.7 86 41-150 31-124 (333)
242 3cmu_A Protein RECA, recombina 74.3 8.4 0.00029 41.5 8.2 88 38-150 1427-1518(2050)
243 3u4q_A ATP-dependent helicase/ 74.3 4 0.00014 42.0 5.8 60 22-93 9-68 (1232)
244 3ilm_A ALR3790 protein; rhodan 74.0 2.8 9.6E-05 31.1 3.5 37 238-274 55-92 (141)
245 2xau_A PRE-mRNA-splicing facto 73.2 2.7 9.4E-05 40.8 4.1 76 44-121 72-153 (773)
246 1vee_A Proline-rich protein fa 72.9 3 0.0001 30.5 3.5 37 238-274 73-110 (134)
247 3dm5_A SRP54, signal recogniti 71.4 55 0.0019 29.3 11.9 46 137-186 182-228 (443)
248 1z63_A Helicase of the SNF2/RA 71.3 2.1 7.2E-05 39.0 2.7 73 67-143 37-117 (500)
249 3cmw_A Protein RECA, recombina 70.5 12 0.0004 39.7 8.2 88 39-151 1432-1523(1706)
250 2w00_A HSDR, R.ECOR124I; ATP-b 70.4 3 0.0001 42.0 3.7 64 67-131 271-352 (1038)
251 1pjr_A PCRA; DNA repair, DNA r 70.3 5.2 0.00018 38.5 5.4 38 22-61 10-47 (724)
252 1n0w_A DNA repair protein RAD5 68.9 20 0.00067 28.6 8.0 23 38-60 24-46 (243)
253 2wv9_A Flavivirin protease NS2 68.7 0.56 1.9E-05 44.9 -1.8 55 67-121 215-283 (673)
254 2vl7_A XPD; helicase, unknown 67.9 2.6 8.8E-05 39.1 2.6 30 63-93 4-37 (540)
255 1v5w_A DMC1, meiotic recombina 67.8 14 0.00047 31.9 7.1 21 41-61 125-145 (343)
256 3cmu_A Protein RECA, recombina 64.9 51 0.0017 35.7 11.6 87 39-150 384-474 (2050)
257 1urh_A 3-mercaptopyruvate sulf 64.7 6.9 0.00024 32.5 4.4 38 238-275 229-267 (280)
258 3cmw_A Protein RECA, recombina 64.6 30 0.001 36.7 9.8 86 40-150 734-823 (1706)
259 2r2a_A Uncharacterized protein 62.8 2.9 9.9E-05 33.1 1.6 19 41-59 8-26 (199)
260 1uar_A Rhodanese; sulfurtransf 62.4 11 0.00037 31.4 5.3 37 238-274 232-270 (285)
261 3tg1_B Dual specificity protei 61.9 6.3 0.00022 29.6 3.3 36 239-274 93-137 (158)
262 1e9r_A Conjugal transfer prote 60.1 6.8 0.00023 35.0 3.8 42 37-94 52-93 (437)
263 2eg4_A Probable thiosulfate su 59.8 7.4 0.00025 31.3 3.6 37 238-274 183-219 (230)
264 2gno_A DNA polymerase III, gam 58.9 8.2 0.00028 32.8 3.9 42 136-183 81-122 (305)
265 1ex7_A Guanylate kinase; subst 58.9 6.8 0.00023 30.6 3.1 23 39-61 2-24 (186)
266 4f67_A UPF0176 protein LPG2838 58.8 6.5 0.00022 32.6 3.1 38 237-274 179-217 (265)
267 3hu3_A Transitional endoplasmi 58.8 30 0.001 31.5 7.8 48 137-184 297-350 (489)
268 1c4o_A DNA nucleotide excision 58.1 14 0.00048 35.1 5.7 52 23-93 8-64 (664)
269 2whx_A Serine protease/ntpase/ 57.6 1.3 4.6E-05 41.8 -1.4 57 65-121 169-228 (618)
270 1e0c_A Rhodanese, sulfurtransf 56.8 11 0.00037 31.1 4.3 36 238-273 222-258 (271)
271 3hws_A ATP-dependent CLP prote 56.7 18 0.00061 31.2 5.8 48 4-54 2-67 (363)
272 4b4t_J 26S protease regulatory 55.7 1.1E+02 0.0037 27.0 12.0 15 38-52 182-196 (405)
273 3ec2_A DNA replication protein 55.6 13 0.00045 28.2 4.3 31 26-56 17-56 (180)
274 3ipz_A Monothiol glutaredoxin- 54.9 28 0.00096 24.1 5.6 34 236-269 14-53 (109)
275 2z43_A DNA repair and recombin 53.7 14 0.00046 31.6 4.4 23 39-61 108-130 (324)
276 1p9r_A General secretion pathw 53.4 16 0.00056 32.4 5.0 36 24-59 151-188 (418)
277 4b4t_L 26S protease subunit RP 52.7 1.2E+02 0.0041 27.0 10.5 16 38-53 215-230 (437)
278 3b9p_A CG5977-PA, isoform A; A 52.7 95 0.0033 25.4 14.4 18 38-55 54-71 (297)
279 2chq_A Replication factor C sm 52.1 6.5 0.00022 33.0 2.1 57 1-60 1-60 (319)
280 4b4t_H 26S protease regulatory 51.9 1.4E+02 0.0046 27.0 11.0 15 38-52 243-257 (467)
281 2j6p_A SB(V)-AS(V) reductase; 51.4 24 0.00081 26.2 5.0 48 226-275 56-112 (152)
282 1q57_A DNA primase/helicase; d 50.5 64 0.0022 29.2 8.7 26 126-151 343-368 (503)
283 1urh_A 3-mercaptopyruvate sulf 50.0 18 0.0006 30.0 4.5 36 238-273 85-122 (280)
284 3i2v_A Adenylyltransferase and 49.9 8.7 0.0003 27.3 2.3 34 240-273 73-113 (127)
285 3dmq_A RNA polymerase-associat 49.3 9.5 0.00033 38.1 3.1 74 66-144 152-231 (968)
286 1jbk_A CLPB protein; beta barr 49.2 21 0.00071 26.8 4.6 36 25-60 27-65 (195)
287 3hzu_A Thiosulfate sulfurtrans 48.8 14 0.00046 31.5 3.6 47 228-274 248-296 (318)
288 3pxi_A Negative regulator of g 48.4 88 0.003 30.0 9.7 105 29-179 504-627 (758)
289 1kgd_A CASK, peripheral plasma 47.9 10 0.00036 29.0 2.6 24 37-60 4-27 (180)
290 4b4t_I 26S protease regulatory 47.6 1.4E+02 0.005 26.5 10.1 16 38-53 216-231 (437)
291 3aay_A Putative thiosulfate su 47.3 27 0.00092 28.7 5.2 36 238-273 225-262 (277)
292 3ney_A 55 kDa erythrocyte memb 47.2 12 0.00041 29.5 2.8 25 37-61 18-42 (197)
293 3a8t_A Adenylate isopentenyltr 47.0 11 0.00038 32.5 2.8 22 40-61 42-63 (339)
294 3exa_A TRNA delta(2)-isopenten 46.7 12 0.00042 31.9 2.9 22 40-61 5-26 (322)
295 1vma_A Cell division protein F 46.1 1.3E+02 0.0045 25.2 10.9 19 41-59 107-125 (306)
296 3b85_A Phosphate starvation-in 46.0 31 0.0011 27.2 5.1 30 26-55 10-39 (208)
297 2oap_1 GSPE-2, type II secreti 45.9 19 0.00066 32.9 4.4 35 24-58 245-280 (511)
298 3zyw_A Glutaredoxin-3; metal b 45.8 41 0.0014 23.3 5.3 34 236-269 12-51 (111)
299 2eg4_A Probable thiosulfate su 45.7 36 0.0012 27.1 5.6 34 238-272 60-95 (230)
300 3hzu_A Thiosulfate sulfurtrans 45.4 27 0.00093 29.6 5.0 36 238-273 110-147 (318)
301 3te6_A Regulatory protein SIR3 45.3 11 0.00039 32.1 2.6 24 38-61 45-68 (318)
302 2wlr_A Putative thiosulfate su 45.0 29 0.001 30.7 5.4 36 238-273 202-238 (423)
303 2qmh_A HPR kinase/phosphorylas 44.9 11 0.00039 29.8 2.3 24 38-61 34-57 (205)
304 3ics_A Coenzyme A-disulfide re 44.9 14 0.00049 34.3 3.4 36 238-273 540-575 (588)
305 3umf_A Adenylate kinase; rossm 44.7 9.6 0.00033 30.5 1.9 28 40-68 31-58 (217)
306 1rhs_A Sulfur-substituted rhod 43.9 14 0.00048 30.9 2.9 37 238-274 239-276 (296)
307 2ouc_A Dual specificity protei 43.6 13 0.00045 26.9 2.4 36 239-274 83-127 (142)
308 1e0c_A Rhodanese, sulfurtransf 43.3 29 0.00099 28.4 4.8 36 238-273 80-117 (271)
309 3foz_A TRNA delta(2)-isopenten 43.0 15 0.00053 31.2 3.0 21 41-61 13-33 (316)
310 1jr3_D DNA polymerase III, del 42.5 43 0.0015 28.4 5.9 48 128-181 67-115 (343)
311 1t3k_A Arath CDC25, dual-speci 42.3 37 0.0013 25.1 4.8 37 238-274 84-130 (152)
312 3hjh_A Transcription-repair-co 42.3 16 0.00055 33.2 3.2 70 226-297 371-446 (483)
313 3aay_A Putative thiosulfate su 42.3 33 0.0011 28.2 5.0 36 238-273 76-113 (277)
314 3sr0_A Adenylate kinase; phosp 41.9 15 0.00051 29.0 2.7 27 41-68 3-29 (206)
315 3ntd_A FAD-dependent pyridine 41.0 19 0.00065 33.2 3.6 36 238-273 523-558 (565)
316 3mwy_W Chromo domain-containin 40.1 15 0.00052 35.7 2.9 73 67-143 236-317 (800)
317 4ag6_A VIRB4 ATPase, type IV s 40.1 28 0.00095 30.4 4.4 41 37-93 34-74 (392)
318 1fnn_A CDC6P, cell division co 39.8 24 0.00082 30.4 3.9 21 40-60 46-66 (389)
319 1okg_A Possible 3-mercaptopyru 39.7 21 0.00073 31.1 3.5 36 239-274 246-282 (373)
320 1lvg_A Guanylate kinase, GMP k 39.6 18 0.00062 28.1 2.8 23 37-59 3-25 (198)
321 3tau_A Guanylate kinase, GMP k 39.5 17 0.00059 28.5 2.7 23 38-60 8-30 (208)
322 2qby_A CDC6 homolog 1, cell di 39.1 27 0.00093 29.9 4.1 35 25-59 25-66 (386)
323 1uar_A Rhodanese; sulfurtransf 38.6 30 0.001 28.6 4.1 36 238-273 78-115 (285)
324 3trf_A Shikimate kinase, SK; a 38.4 20 0.00067 27.2 2.8 28 38-66 5-32 (185)
325 3cf2_A TER ATPase, transitiona 38.3 2E+02 0.0069 27.9 10.3 16 39-54 239-254 (806)
326 4ag6_A VIRB4 ATPase, type IV s 38.3 28 0.00094 30.4 4.1 15 137-151 262-276 (392)
327 3lw7_A Adenylate kinase relate 38.2 21 0.00071 26.5 2.9 24 41-66 4-27 (179)
328 2gza_A Type IV secretion syste 38.1 21 0.0007 31.0 3.1 23 36-58 173-195 (361)
329 3olh_A MST, 3-mercaptopyruvate 38.1 23 0.0008 29.7 3.4 36 238-273 253-289 (302)
330 2v1u_A Cell division control p 38.0 29 0.00098 29.8 4.1 36 25-60 24-66 (387)
331 2fna_A Conserved hypothetical 36.8 31 0.0011 29.1 4.1 36 25-61 18-53 (357)
332 2qor_A Guanylate kinase; phosp 36.3 25 0.00085 27.3 3.1 25 37-61 11-35 (204)
333 2qen_A Walker-type ATPase; unk 36.3 35 0.0012 28.7 4.4 37 25-61 17-54 (350)
334 3tp9_A Beta-lactamase and rhod 36.0 21 0.00073 32.1 3.0 36 238-273 426-462 (474)
335 3cf2_A TER ATPase, transitiona 35.8 1E+02 0.0034 30.1 7.7 49 137-185 570-627 (806)
336 1yt8_A Thiosulfate sulfurtrans 35.8 33 0.0011 31.5 4.3 38 238-275 321-359 (539)
337 3lda_A DNA repair protein RAD5 35.8 1.3E+02 0.0043 26.5 7.9 21 39-59 179-199 (400)
338 3dmn_A Putative DNA helicase; 35.7 1.4E+02 0.0047 22.4 8.9 58 238-298 60-123 (174)
339 2eyu_A Twitching motility prot 35.4 18 0.0006 29.8 2.2 23 37-59 24-46 (261)
340 2wlr_A Putative thiosulfate su 34.8 43 0.0015 29.6 4.8 37 238-274 357-394 (423)
341 1z3i_X Similar to RAD54-like; 34.4 51 0.0018 31.0 5.5 64 67-132 55-136 (644)
342 3co5_A Putative two-component 34.2 26 0.00088 25.5 2.7 17 36-52 25-41 (143)
343 3te6_A Regulatory protein SIR3 34.1 39 0.0013 28.8 4.1 42 137-184 132-175 (318)
344 2ixs_A SDAI restriction endonu 33.1 1.2E+02 0.0041 25.6 6.7 144 5-186 116-286 (323)
345 3vaa_A Shikimate kinase, SK; s 33.0 27 0.00092 27.0 2.8 28 37-65 24-51 (199)
346 2yan_A Glutaredoxin-3; oxidore 32.8 78 0.0027 21.3 5.0 32 238-269 15-52 (105)
347 3a00_A Guanylate kinase, GMP k 32.6 29 0.00098 26.5 2.9 21 39-59 2-22 (186)
348 2ius_A DNA translocase FTSK; n 32.1 33 0.0011 31.4 3.5 24 38-61 167-190 (512)
349 3kb2_A SPBC2 prophage-derived 31.8 29 0.00098 25.7 2.7 24 41-65 4-27 (173)
350 3dl0_A Adenylate kinase; phosp 31.5 35 0.0012 26.6 3.3 25 41-66 3-27 (216)
351 3gx8_A Monothiol glutaredoxin- 31.1 66 0.0023 22.7 4.4 28 238-265 14-47 (121)
352 3crm_A TRNA delta(2)-isopenten 30.9 31 0.0011 29.5 3.0 22 40-61 7-28 (323)
353 2pt7_A CAG-ALFA; ATPase, prote 30.9 25 0.00087 30.0 2.5 19 36-54 169-187 (330)
354 2qby_B CDC6 homolog 3, cell di 30.8 46 0.0016 28.5 4.2 22 39-60 46-67 (384)
355 3iij_A Coilin-interacting nucl 30.5 35 0.0012 25.7 3.1 21 38-58 11-31 (180)
356 1z6g_A Guanylate kinase; struc 30.4 33 0.0011 27.1 3.0 22 37-58 22-43 (218)
357 1sxj_E Activator 1 40 kDa subu 30.2 56 0.0019 27.7 4.6 21 40-60 38-58 (354)
358 2d7d_A Uvrabc system protein B 30.2 68 0.0023 30.4 5.5 40 22-61 11-55 (661)
359 1zd8_A GTP:AMP phosphotransfer 30.1 34 0.0011 27.1 3.0 27 39-66 8-34 (227)
360 3d3q_A TRNA delta(2)-isopenten 30.1 33 0.0011 29.6 3.0 21 41-61 10-30 (340)
361 2bbw_A Adenylate kinase 4, AK4 30.1 29 0.001 27.9 2.6 30 39-69 28-57 (246)
362 2ze6_A Isopentenyl transferase 29.8 31 0.0011 28.0 2.8 20 41-60 4-23 (253)
363 3eph_A TRNA isopentenyltransfe 29.6 28 0.00095 30.8 2.5 21 41-61 5-25 (409)
364 2w58_A DNAI, primosome compone 29.5 52 0.0018 25.2 4.0 18 39-56 55-72 (202)
365 3jvv_A Twitching mobility prot 29.4 28 0.00097 30.1 2.5 22 38-59 123-144 (356)
366 3fb4_A Adenylate kinase; psych 28.7 35 0.0012 26.6 2.8 25 41-66 3-27 (216)
367 3hzh_A Chemotaxis response reg 28.6 1.5E+02 0.0053 21.1 6.4 45 137-188 83-127 (157)
368 2ewv_A Twitching motility prot 28.5 25 0.00086 30.6 2.1 22 38-59 136-157 (372)
369 1tue_A Replication protein E1; 28.4 61 0.0021 25.7 4.1 28 30-57 46-77 (212)
370 2r44_A Uncharacterized protein 28.2 33 0.0011 29.0 2.8 22 33-54 41-62 (331)
371 3tr0_A Guanylate kinase, GMP k 28.0 33 0.0011 26.4 2.6 22 37-58 6-27 (205)
372 1ukz_A Uridylate kinase; trans 27.4 43 0.0015 25.7 3.2 24 41-65 18-41 (203)
373 3ff4_A Uncharacterized protein 27.4 47 0.0016 23.7 3.0 74 240-313 5-82 (122)
374 3euj_A Chromosome partition pr 27.2 36 0.0012 30.9 2.9 16 136-151 413-428 (483)
375 3zvl_A Bifunctional polynucleo 27.2 67 0.0023 28.3 4.7 24 41-65 261-284 (416)
376 1cmk_I CAMP-dependent protein 26.9 18 0.00063 18.0 0.5 8 309-316 9-16 (26)
377 1okg_A Possible 3-mercaptopyru 26.3 54 0.0018 28.5 3.8 37 238-274 94-132 (373)
378 1w5s_A Origin recognition comp 26.3 41 0.0014 29.2 3.1 36 25-60 27-74 (412)
379 2j41_A Guanylate kinase; GMP, 26.2 37 0.0013 26.1 2.6 22 37-58 5-26 (207)
380 1yt8_A Thiosulfate sulfurtrans 26.2 46 0.0016 30.6 3.5 37 238-274 429-466 (539)
381 1y63_A LMAJ004144AAA protein; 26.0 42 0.0014 25.5 2.8 19 38-56 10-28 (184)
382 3cm0_A Adenylate kinase; ATP-b 25.7 40 0.0014 25.4 2.6 26 39-65 5-30 (186)
383 1e4v_A Adenylate kinase; trans 25.3 41 0.0014 26.3 2.6 25 41-66 3-27 (214)
384 2rhm_A Putative kinase; P-loop 24.6 43 0.0015 25.3 2.6 25 40-65 7-31 (193)
385 1f2t_A RAD50 ABC-ATPase; DNA d 24.6 40 0.0014 24.8 2.3 17 41-57 26-42 (149)
386 1tev_A UMP-CMP kinase; ploop, 24.5 43 0.0015 25.3 2.6 25 40-65 5-29 (196)
387 3nbx_X ATPase RAVA; AAA+ ATPas 24.4 48 0.0016 30.2 3.2 23 31-53 34-56 (500)
388 1s96_A Guanylate kinase, GMP k 24.4 42 0.0014 26.6 2.6 22 37-58 15-36 (219)
389 1ofh_A ATP-dependent HSL prote 24.4 67 0.0023 26.4 4.0 18 38-55 50-67 (310)
390 1ly1_A Polynucleotide kinase; 24.4 45 0.0015 24.8 2.7 19 41-59 5-23 (181)
391 1zak_A Adenylate kinase; ATP:A 24.3 48 0.0016 26.0 2.9 26 39-65 6-31 (222)
392 1qhx_A CPT, protein (chloramph 24.1 56 0.0019 24.3 3.2 22 39-60 4-25 (178)
393 1rhs_A Sulfur-substituted rhod 24.1 47 0.0016 27.6 2.9 36 238-273 91-130 (296)
394 4e22_A Cytidylate kinase; P-lo 24.0 38 0.0013 27.4 2.3 30 38-68 27-56 (252)
395 1um8_A ATP-dependent CLP prote 23.6 1.9E+02 0.0066 24.6 6.9 17 38-54 72-88 (376)
396 2c95_A Adenylate kinase 1; tra 23.4 45 0.0015 25.3 2.5 27 38-65 9-35 (196)
397 3tlx_A Adenylate kinase 2; str 23.4 46 0.0016 26.8 2.6 25 40-65 31-55 (243)
398 1w36_D RECD, exodeoxyribonucle 23.4 81 0.0028 29.5 4.6 41 53-93 135-175 (608)
399 2cdn_A Adenylate kinase; phosp 23.2 50 0.0017 25.3 2.8 26 40-66 22-47 (201)
400 3r2u_A Metallo-beta-lactamase 23.2 17 0.00059 32.7 0.0 37 238-274 424-461 (466)
401 2wem_A Glutaredoxin-related pr 23.1 1.9E+02 0.0065 20.2 5.6 38 228-269 12-56 (118)
402 1c25_A CDC25A; hydrolase, cell 23.1 52 0.0018 24.4 2.7 36 239-274 87-136 (161)
403 1tvm_A PTS system, galactitol- 23.1 1.3E+02 0.0045 20.8 4.7 23 39-61 22-44 (113)
404 3egc_A Putative ribose operon 22.8 2.9E+02 0.01 22.0 9.9 38 226-265 174-211 (291)
405 3rqi_A Response regulator prot 22.5 2.4E+02 0.0081 20.8 7.4 46 136-188 50-95 (184)
406 2xb4_A Adenylate kinase; ATP-b 22.5 49 0.0017 26.1 2.6 24 41-65 3-26 (223)
407 1kag_A SKI, shikimate kinase I 22.4 71 0.0024 23.6 3.4 18 38-55 4-21 (173)
408 2wci_A Glutaredoxin-4; redox-a 22.4 1.9E+02 0.0066 20.8 5.6 41 225-269 24-70 (135)
409 1hqc_A RUVB; extended AAA-ATPa 22.4 92 0.0031 25.8 4.5 17 39-55 39-55 (324)
410 1kht_A Adenylate kinase; phosp 22.4 53 0.0018 24.7 2.7 21 38-58 3-23 (192)
411 1aky_A Adenylate kinase; ATP:A 22.3 50 0.0017 25.8 2.6 26 39-65 5-30 (220)
412 2l82_A Designed protein OR32; 22.2 1.9E+02 0.0065 20.0 5.1 33 243-275 6-38 (162)
413 2bjv_A PSP operon transcriptio 22.1 79 0.0027 25.5 3.9 18 37-54 28-45 (265)
414 1gvn_B Zeta; postsegregational 21.9 57 0.0019 27.1 3.0 21 41-61 36-56 (287)
415 3lnc_A Guanylate kinase, GMP k 21.9 43 0.0015 26.5 2.2 23 37-59 26-48 (231)
416 3qf7_A RAD50; ABC-ATPase, ATPa 21.9 46 0.0016 28.8 2.5 25 40-64 25-49 (365)
417 2lnd_A De novo designed protei 21.9 1.7E+02 0.0058 18.9 6.7 44 226-271 40-85 (112)
418 1qf9_A UMP/CMP kinase, protein 21.9 49 0.0017 24.9 2.5 24 41-65 9-32 (194)
419 2bwj_A Adenylate kinase 5; pho 21.8 68 0.0023 24.3 3.3 27 38-65 12-38 (199)
420 1nij_A Hypothetical protein YJ 21.6 94 0.0032 26.1 4.4 19 41-59 7-25 (318)
421 3t61_A Gluconokinase; PSI-biol 21.6 57 0.0019 25.0 2.8 20 40-59 20-39 (202)
422 1znw_A Guanylate kinase, GMP k 21.5 53 0.0018 25.5 2.6 22 35-56 17-38 (207)
423 3jte_A Response regulator rece 21.5 2.1E+02 0.0071 19.8 6.7 45 136-187 48-92 (143)
424 2qgz_A Helicase loader, putati 21.4 54 0.0019 27.5 2.8 17 38-54 152-168 (308)
425 2vli_A Antibiotic resistance p 21.3 64 0.0022 24.1 3.0 26 39-65 6-31 (183)
426 2z0h_A DTMP kinase, thymidylat 21.3 55 0.0019 24.8 2.7 17 41-57 3-19 (197)
427 1zp6_A Hypothetical protein AT 21.3 41 0.0014 25.5 1.8 20 37-56 8-27 (191)
428 3pxg_A Negative regulator of g 21.3 1.1E+02 0.0037 27.5 4.9 21 38-58 201-221 (468)
429 3uk6_A RUVB-like 2; hexameric 21.2 50 0.0017 28.2 2.6 21 39-59 71-91 (368)
430 2jaq_A Deoxyguanosine kinase; 21.1 55 0.0019 24.9 2.6 19 41-59 3-21 (205)
431 3fq8_A Glutamate-1-semialdehyd 20.9 1.3E+02 0.0044 26.1 5.3 40 108-148 199-243 (427)
432 1sn9_A BBAT, tetrameric beta-B 20.9 50 0.0017 15.7 1.3 19 3-21 5-23 (26)
433 2c9o_A RUVB-like 1; hexameric 20.7 1E+02 0.0035 27.5 4.6 20 39-58 64-83 (456)
434 2e7u_A Glutamate-1-semialdehyd 20.6 1.1E+02 0.0037 26.7 4.7 39 108-148 199-242 (424)
435 1sff_A 4-aminobutyrate aminotr 20.5 1E+02 0.0034 26.7 4.5 40 108-148 199-243 (426)
436 3olh_A MST, 3-mercaptopyruvate 20.5 1E+02 0.0036 25.6 4.4 36 238-273 106-145 (302)
437 1hzm_A Dual specificity protei 20.4 78 0.0027 23.1 3.2 37 238-274 91-137 (154)
438 1e6c_A Shikimate kinase; phosp 20.4 60 0.0021 24.0 2.6 19 40-58 4-22 (173)
439 1qb0_A Protein (M-phase induce 20.3 78 0.0027 24.8 3.4 38 238-275 108-159 (211)
440 1nks_A Adenylate kinase; therm 20.3 58 0.002 24.5 2.5 17 41-57 4-20 (194)
441 2iyv_A Shikimate kinase, SK; t 20.2 76 0.0026 23.8 3.2 26 40-66 4-29 (184)
No 1
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.5e-52 Score=395.40 Aligned_cols=300 Identities=48% Similarity=0.821 Sum_probs=268.8
Q ss_pred CCCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCC
Q psy4493 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKK 83 (323)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~ 83 (323)
+|||+.++.+.|++.||+..|||.|.++++.++.++++++++|||+|||.. +| +|++..+.
T Consensus 25 ~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~----------------~~---lpal~~~g 85 (591)
T 2v1x_A 25 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLC----------------YQ---LPALCSDG 85 (591)
T ss_dssp CSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHH----------------HH---HHHHTSSS
T ss_pred cCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHH----------------HH---HHHHHcCC
Confidence 589999999999999999999999999999999999999999999999954 22 44455566
Q ss_pred cEEEEccchh-------hhhhcCeee-------------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCC
Q psy4493 84 DAIIIMPTGK-------LLKKKKICL-------------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGC 137 (323)
Q Consensus 84 ~~lv~~pTgs-------~l~~~~i~l-------------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~ 137 (323)
.++|++||.+ .+...|+.. ....+..+|+|+||++|..+..+.+.+.......+
T Consensus 86 ~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~ 165 (591)
T 2v1x_A 86 FTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARR 165 (591)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTC
T ss_pred cEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccC
Confidence 7999999999 555556651 01356789999999999765577777777777789
Q ss_pred cceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEe
Q psy4493 138 LARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRI 217 (323)
Q Consensus 138 v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 217 (323)
+++|||||||++.+||++|++.|..+..++..+++.++++||||+++...+++.+++++..+..+..+..++++.|.+..
T Consensus 166 i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~ 245 (591)
T 2v1x_A 166 FTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQ 245 (591)
T ss_dssp EEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEE
T ss_pred CcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEe
Confidence 99999999999999999999999998889888899999999999999999999999999999989999999999999888
Q ss_pred cCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ce
Q psy4493 218 KPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SI 279 (323)
Q Consensus 218 ~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~ 279 (323)
......++...+.+++.....+.++||||+|++.|+.+++.|.+.|+.+..|||+|++++ |+
T Consensus 246 ~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~ 325 (591)
T 2v1x_A 246 KPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV 325 (591)
T ss_dssp CCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred CCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 777677788899999876567889999999999999999999999999999999999887 99
Q ss_pred eeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 280 ~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
++++|+|+|+|++||++|+|.|...|+||+||+||.|++|.|+
T Consensus 326 a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i 368 (591)
T 2v1x_A 326 AFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCI 368 (591)
T ss_dssp TSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEE
T ss_pred hhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEE
Confidence 9999999999999999999999999999999999999999886
No 2
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.1e-48 Score=366.66 Aligned_cols=289 Identities=35% Similarity=0.601 Sum_probs=249.5
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCc
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD 84 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~ 84 (323)
++.++++.+.|++.||+..||+.|.++++.++.++++++.+|||+|||.. +| +|++..+..
T Consensus 7 l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~----------------~~---lp~l~~~g~ 67 (523)
T 1oyw_A 7 LNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLC----------------YQ---IPALLLNGL 67 (523)
T ss_dssp SSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHH----------------HH---HHHHHSSSE
T ss_pred CCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHH----------------HH---HHHHHhCCC
Confidence 45577899999999999999999999999999999999999999999954 22 344445567
Q ss_pred EEEEccchh-------hhhhcCeee-----------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcce
Q psy4493 85 AIIIMPTGK-------LLKKKKICL-----------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLAR 140 (323)
Q Consensus 85 ~lv~~pTgs-------~l~~~~i~l-----------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~ 140 (323)
+++++|+.+ .+...|+.. ....+..+|+|+||+++.. ..+.+.+ ...++++
T Consensus 68 ~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~-~~~~~~l----~~~~~~~ 142 (523)
T 1oyw_A 68 TVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLML-DNFLEHL----AHWNPVL 142 (523)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTS-TTHHHHH----TTSCEEE
T ss_pred EEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhC-hHHHHHH----hhCCCCE
Confidence 899999999 555666651 1123568999999999973 3444433 2368999
Q ss_pred EEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecCC
Q psy4493 141 IAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPA 220 (323)
Q Consensus 141 vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (323)
|||||||++.+||++|++.|..+..++..+++.+++++|||+++....++.+.+++.++.++..+.+++++.+.+....
T Consensus 143 vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~- 221 (523)
T 1oyw_A 143 LAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKF- 221 (523)
T ss_dssp EEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECS-
T ss_pred EEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCC-
Confidence 9999999999999999999999988888889999999999999999899999999998888888899999988877643
Q ss_pred chhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeee
Q psy4493 221 AQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282 (323)
Q Consensus 221 ~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~ 282 (323)
++...+.+++... .+.++||||+|++.|+.+++.|++.|+.+..|||++++++ |++++
T Consensus 222 ---~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~ 297 (523)
T 1oyw_A 222 ---KPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFG 297 (523)
T ss_dssp ---SHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSC
T ss_pred ---CHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhh
Confidence 3556777777743 6789999999999999999999999999999999999876 99999
Q ss_pred cccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 283 LGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 283 ~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+|+|+|+|++||++|+|.|..+|+||+||+||.|+.|.|+
T Consensus 298 ~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~ 337 (523)
T 1oyw_A 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM 337 (523)
T ss_dssp TTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEE
T ss_pred CCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEE
Confidence 9999999999999999999999999999999999999875
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-42 Score=319.83 Aligned_cols=285 Identities=14% Similarity=0.152 Sum_probs=216.9
Q ss_pred CcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHh------
Q psy4493 7 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIAL------ 80 (323)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~------ 80 (323)
.++.+.+.|++ .++..+++.|.++++.++.++++++.+|||+|||..+...+.. .+.
T Consensus 63 l~~~l~~~l~~-~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~----------------~l~~~~~~~ 125 (434)
T 2db3_A 63 LRDIIIDNVNK-SGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILS----------------KLLEDPHEL 125 (434)
T ss_dssp CCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH----------------HHHHSCCCC
T ss_pred CCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHH----------------HHHhccccc
Confidence 45566777654 6899999999999999999999999999999999764433321 121
Q ss_pred --cCCcEEEEccchh-------hhhhc----Ceee-------------eccCCCeeEEEEcccccccchhHHHHHHH-HH
Q psy4493 81 --LKKDAIIIMPTGK-------LLKKK----KICL-------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MY 133 (323)
Q Consensus 81 --~~~~~lv~~pTgs-------~l~~~----~i~l-------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~ 133 (323)
.+..+++++||.+ .+.+. ++.. ......++|+|+||++|.+ .+.. ..
T Consensus 126 ~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~------~l~~~~~ 199 (434)
T 2db3_A 126 ELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLD------FVDRTFI 199 (434)
T ss_dssp CTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHH------HHHTTSC
T ss_pred ccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHH------HHHhCCc
Confidence 2457999999998 22221 2221 1123567999999999974 3433 23
Q ss_pred hhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCC---CCCC
Q psy4493 134 KAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPF---NRPN 210 (323)
Q Consensus 134 ~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~~~~ 210 (323)
...+++++|+||||++.++| |++.+..+.......++.|++++|||++++..+....++ .++..+.... ...+
T Consensus 200 ~l~~~~~lVlDEah~~~~~g--f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l--~~~~~i~~~~~~~~~~~ 275 (434)
T 2db3_A 200 TFEDTRFVVLDEADRMLDMG--FSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFL--KNYVFVAIGIVGGACSD 275 (434)
T ss_dssp CCTTCCEEEEETHHHHTSTT--THHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTC--SSCEEEEESSTTCCCTT
T ss_pred ccccCCeEEEccHhhhhccC--cHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhc--cCCEEEEeccccccccc
Confidence 45789999999999999975 888776653222234578999999999988766555543 4555544322 2233
Q ss_pred ceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc-------------
Q psy4493 211 LFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------- 277 (323)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------- 277 (323)
+...+.... ...+...+.+++.. ...++||||++++.|+.+++.|.+.|+.+..+||++++.+
T Consensus 276 i~~~~~~~~--~~~k~~~l~~~l~~--~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~ 351 (434)
T 2db3_A 276 VKQTIYEVN--KYAKRSKLIEILSE--QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSM 351 (434)
T ss_dssp EEEEEEECC--GGGHHHHHHHHHHH--CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSC
T ss_pred cceEEEEeC--cHHHHHHHHHHHHh--CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 443333333 45577888888875 3455999999999999999999999999999999999887
Q ss_pred -----ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 -----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 -----T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++++|+|+|+|++||+||+|.+..+|+||+||+||.|+.|.|+
T Consensus 352 ~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~ 401 (434)
T 2db3_A 352 KVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRAT 401 (434)
T ss_dssp SEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEE
T ss_pred cEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEE
Confidence 999999999999999999999999999999999999999999875
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.5e-41 Score=306.77 Aligned_cols=301 Identities=16% Similarity=0.171 Sum_probs=215.5
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHh----
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIAL---- 80 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~---- 80 (323)
+++++.+.+.|.. .++..+++.|.++++.++.++++++.+|||+|||..+...+...+.-. ....+...+.
T Consensus 20 ~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~----~~~~~~~~~~~~~~ 94 (417)
T 2i4i_A 20 VEMGEIIMGNIEL-TRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSD----GPGEALRAMKENGR 94 (417)
T ss_dssp SCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHH----CCCHHHHHHHHCBT
T ss_pred CCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhc----cccchhhccccccc
Confidence 4456777777754 689999999999999999999999999999999976443332210000 0000111110
Q ss_pred -----cCCcEEEEccchh-------hhhh----cCeee-------------eccCCCeeEEEEcccccccchhHHHHHHH
Q psy4493 81 -----LKKDAIIIMPTGK-------LLKK----KKICL-------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK 131 (323)
Q Consensus 81 -----~~~~~lv~~pTgs-------~l~~----~~i~l-------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~ 131 (323)
.+..+++++||.+ .+.. .++.. ......++|+|+||+++.. .+..
T Consensus 95 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~------~l~~ 168 (417)
T 2i4i_A 95 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVD------MMER 168 (417)
T ss_dssp TBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHH------HHHT
T ss_pred cccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHH------HHHc
Confidence 1145999999998 2221 22321 1123457999999999974 3333
Q ss_pred -HHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCC--CCCEEEEeecCChhHHHHHHHHhCCCCcEEEec---C
Q psy4493 132 -MYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP--DVPILGLTATATTKVMLDVQKMLQIEDCVVIKA---P 205 (323)
Q Consensus 132 -~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~--~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~ 205 (323)
.....+++++|+||||++.+++ +++.+..+.......+ ..+++++|||+++........+++ ++..+.. .
T Consensus 169 ~~~~~~~~~~iViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~ 244 (417)
T 2i4i_A 169 GKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLD--EYIFLAVGRVG 244 (417)
T ss_dssp TSBCCTTCCEEEESSHHHHHHTT--CHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCS--SCEEEEEC---
T ss_pred CCcChhhCcEEEEEChhHhhccC--cHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcC--CCEEEEeCCCC
Confidence 2345688999999999999865 7777655422111222 568999999999887665556643 3333332 2
Q ss_pred CCCCCceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc--------
Q psy4493 206 FNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------- 277 (323)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~-------- 277 (323)
...+++...+.... ..++...+.+++.....+.++||||++++.|+.+++.|.+.|+.+..+||++++++
T Consensus 245 ~~~~~i~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f 322 (417)
T 2i4i_A 245 STSENITQKVVWVE--ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 322 (417)
T ss_dssp -CCSSEEEEEEECC--GGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCccCceEEEEEec--cHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHH
Confidence 23444544444333 35567788888876556789999999999999999999999999999999999876
Q ss_pred ----------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 ----------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 ----------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++++|+|+|++++||++|+|.+..+|+||+||+||.|+.|.|+
T Consensus 323 ~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~ 377 (417)
T 2i4i_A 323 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 377 (417)
T ss_dssp HHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEE
T ss_pred HcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEE
Confidence 999999999999999999999999999999999999999999875
No 5
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3e-40 Score=314.34 Aligned_cols=290 Identities=19% Similarity=0.217 Sum_probs=210.8
Q ss_pred cHHHHHHHHHhcCCCCCChhHHHHHHHHh--cCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhc----
Q psy4493 8 SDRVRSVLKSKFNLTDFRPNQLAAINIAL--LKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL---- 81 (323)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~--~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~---- 81 (323)
++++.+.| +.+++..++|.|.++++.++ .++++++.+|||+|||..+...+ +..+..
T Consensus 29 ~~~l~~~l-~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpi----------------l~~l~~~~~~ 91 (579)
T 3sqw_A 29 DKEIHKAI-TRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPI----------------FQHLINTKFD 91 (579)
T ss_dssp CHHHHHHH-HTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHH----------------HHHHHHTTTS
T ss_pred CHHHHHHH-HHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHH----------------HHHHHhcccc
Confidence 44555555 45799999999999999999 67899999999999997643333 222222
Q ss_pred ---CCcEEEEccchh-------hhhhc-----Ce---e---e-----------eccCCCeeEEEEcccccccchhHHHHH
Q psy4493 82 ---KKDAIIIMPTGK-------LLKKK-----KI---C---L-----------MTESSSLKLLYVSPEKLAKSKSFMTKL 129 (323)
Q Consensus 82 ---~~~~lv~~pTgs-------~l~~~-----~i---~---l-----------~~~~~~~~vii~Tp~~l~~~~~~~~~l 129 (323)
+..+++++||.+ .+... ++ . + ......++|+|+||+++.+ .+
T Consensus 92 ~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~------~l 165 (579)
T 3sqw_A 92 SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLID------VL 165 (579)
T ss_dssp STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHH------HH
T ss_pred ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHH------HH
Confidence 236999999998 22221 11 1 1 0112357999999999974 33
Q ss_pred HH--HHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhC-----CCCCEEEEeecCChhHHHHHHHHhCCCCcEEE
Q psy4493 130 QK--MYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF-----PDVPILGLTATATTKVMLDVQKMLQIEDCVVI 202 (323)
Q Consensus 130 ~~--~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~-----~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~ 202 (323)
.. .....++++|||||||++.+|| |++.+..+....... ++.++++||||+++.....+...++.+....+
T Consensus 166 ~~~~~~~~~~~~~lViDEah~l~~~g--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~ 243 (579)
T 3sqw_A 166 EKYSNKFFRFVDYKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFL 243 (579)
T ss_dssp HHHHHHHCTTCCEEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEE
T ss_pred HhccccccccCCEEEEEChHHhhcCC--CHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEE
Confidence 32 3456789999999999999987 888887765443322 26799999999999876655555443333333
Q ss_pred ec-CCC----CCCceeEEEecCCchh---HHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhC---CCeEEeecC
Q psy4493 203 KA-PFN----RPNLFYEVRIKPAAQK---DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR---GLRVSAYHA 271 (323)
Q Consensus 203 ~~-~~~----~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~---~~~v~~~h~ 271 (323)
.. ... ...+............ ..+..+.+.+.....+.++||||+|++.|+.+++.|.+. ++.+..+||
T Consensus 244 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg 323 (579)
T 3sqw_A 244 DTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHG 323 (579)
T ss_dssp ESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEEST
T ss_pred eecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecC
Confidence 32 111 1222323332222222 333444555554456789999999999999999999986 899999999
Q ss_pred CCCCCc------------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 272 KLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 272 ~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
++++.+ |+++++|+|+|+|++||++|+|.+...|+||+||+||.|+.|.|+
T Consensus 324 ~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i 392 (579)
T 3sqw_A 324 KITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSV 392 (579)
T ss_dssp TSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEE
T ss_pred CCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEE
Confidence 999877 999999999999999999999999999999999999999999876
No 6
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.5e-40 Score=314.23 Aligned_cols=289 Identities=19% Similarity=0.219 Sum_probs=208.5
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHh--cCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC----
Q psy4493 9 DRVRSVLKSKFNLTDFRPNQLAAINIAL--LKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK---- 82 (323)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~Q~~~~~~~~--~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~---- 82 (323)
+.+.+.+ ..+++..++|.|.++++.++ .++++++.+|||+|||......+ +..+.++
T Consensus 81 ~~l~~~l-~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpi----------------l~~l~~~~~~~ 143 (563)
T 3i5x_A 81 KEIHKAI-TRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPI----------------FQHLINTKFDS 143 (563)
T ss_dssp HHHHHHH-HTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHH----------------HHHHHHTTTSS
T ss_pred HHHHHHH-HHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHH----------------HHHHHhccccc
Confidence 4455555 34689999999999999999 67899999999999997643333 2222222
Q ss_pred ---CcEEEEccchh-------hhhh-----cCe---e---e-----------eccCCCeeEEEEcccccccchhHHHHHH
Q psy4493 83 ---KDAIIIMPTGK-------LLKK-----KKI---C---L-----------MTESSSLKLLYVSPEKLAKSKSFMTKLQ 130 (323)
Q Consensus 83 ---~~~lv~~pTgs-------~l~~-----~~i---~---l-----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~ 130 (323)
..+++++||.+ .+.. .++ . + ......++|+|+||+++.. .+.
T Consensus 144 ~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~------~l~ 217 (563)
T 3i5x_A 144 QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLID------VLE 217 (563)
T ss_dssp TTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHH------HHH
T ss_pred cCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHH------HHH
Confidence 36999999999 2222 111 1 1 0112367999999999974 232
Q ss_pred H--HHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhh-----CCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEe
Q psy4493 131 K--MYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM-----FPDVPILGLTATATTKVMLDVQKMLQIEDCVVIK 203 (323)
Q Consensus 131 ~--~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~-----~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~ 203 (323)
. .....+++++||||||++.+|+ |++.+..+...... .++.|+++||||+++.+.+.+...++.+....+.
T Consensus 218 ~~~~~~~~~~~~lViDEah~l~~~~--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~ 295 (563)
T 3i5x_A 218 KYSNKFFRFVDYKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLD 295 (563)
T ss_dssp HHHHHHCTTCCEEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEE
T ss_pred hccccccccceEEEEeCHHHHhccc--hHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEe
Confidence 2 2356789999999999999976 88888776443322 1267899999999988766555554433333333
Q ss_pred cC-CC----CCCceeEEEecCCchh---HHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhC---CCeEEeecCC
Q psy4493 204 AP-FN----RPNLFYEVRIKPAAQK---DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR---GLRVSAYHAK 272 (323)
Q Consensus 204 ~~-~~----~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~---~~~v~~~h~~ 272 (323)
.. .. ...+...+........ .....+...+.....+.++||||+|++.|+.+++.|.+. ++.+..+||+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~ 375 (563)
T 3i5x_A 296 TVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGK 375 (563)
T ss_dssp SSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTT
T ss_pred ccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCC
Confidence 21 11 1222222222222212 233444444544457789999999999999999999986 8999999999
Q ss_pred CCCCc------------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 273 LESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 273 ~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+++.+ |+++++|+|+|+|++||++|+|.+..+|+||+||+||.|+.|.|+
T Consensus 376 ~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i 443 (563)
T 3i5x_A 376 ITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSV 443 (563)
T ss_dssp SCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEE
Confidence 99877 999999999999999999999999999999999999999999875
No 7
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=7.3e-41 Score=306.06 Aligned_cols=290 Identities=17% Similarity=0.184 Sum_probs=203.5
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCc
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD 84 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~ 84 (323)
+++++.+.+.|++ +++..+++.|.++++.++.++++++.+|||+|||..+...+...+.. -..+..
T Consensus 45 ~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~-------------~~~~~~ 110 (414)
T 3eiq_A 45 MNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL-------------DLKATQ 110 (414)
T ss_dssp GCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT-------------TSCSCC
T ss_pred CCCCHHHHHHHHH-cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh-------------cCCcee
Confidence 4567777777776 79999999999999999999999999999999997755444331100 013567
Q ss_pred EEEEccchh-------hhhhc----Ceee--------------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCc
Q psy4493 85 AIIIMPTGK-------LLKKK----KICL--------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCL 138 (323)
Q Consensus 85 ~lv~~pTgs-------~l~~~----~i~l--------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v 138 (323)
+++++||.+ .+... +... ......++|+|+||+++.+ .+.. .....++
T Consensus 111 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~------~l~~~~~~~~~~ 184 (414)
T 3eiq_A 111 ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFD------MLNRRYLSPKYI 184 (414)
T ss_dssp EEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHH------HHHHTSSCSTTC
T ss_pred EEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHH------HHHcCCcccccC
Confidence 999999998 22221 2221 1122668999999999974 3333 3345679
Q ss_pred ceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecC---CCCCCceeEE
Q psy4493 139 ARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAP---FNRPNLFYEV 215 (323)
Q Consensus 139 ~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~~~~~~~~~ 215 (323)
++||+||||++.+++ +...+..+ +....++.++++||||+++........++ .++..+... .....+....
T Consensus 185 ~~vViDEah~~~~~~--~~~~~~~~--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 258 (414)
T 3eiq_A 185 KMFVLDEADEMLSRG--FKDQIYDI--FQKLNSNTQVVLLSATMPSDVLEVTKKFM--RDPIRILVKKEELTLEGIRQFY 258 (414)
T ss_dssp CEEEECSHHHHHHTT--THHHHHHH--HTTSCTTCEEEEECSCCCHHHHHHHTTTC--SSCEEECCCCCCCCTTSCCEEE
T ss_pred cEEEEECHHHhhccC--cHHHHHHH--HHhCCCCCeEEEEEEecCHHHHHHHHHHc--CCCEEEEecCCccCCCCceEEE
Confidence 999999999998754 65554332 33333588999999999987765444443 333433322 1222333222
Q ss_pred EecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------
Q psy4493 216 RIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------ 277 (323)
Q Consensus 216 ~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------ 277 (323)
.... ....+...+.+++.. ...+++||||++++.|+.+++.|.+.++.+..+||++++.+
T Consensus 259 ~~~~-~~~~~~~~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~ 336 (414)
T 3eiq_A 259 INVE-REEWKLDTLCDLYET-LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLIT 336 (414)
T ss_dssp EECS-SSTTHHHHHHHHHHS-SCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEE
T ss_pred EEeC-hHHhHHHHHHHHHHh-CCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 2222 234467777777774 36789999999999999999999999999999999999876
Q ss_pred ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++++|+|+|++++||++|+|.+..+|+||+||+||.|+.|.|+
T Consensus 337 T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~ 381 (414)
T 3eiq_A 337 TDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAI 381 (414)
T ss_dssp CSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEE
T ss_pred CCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEE
Confidence 999999999999999999999999999999999999999999875
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=4.3e-40 Score=298.86 Aligned_cols=290 Identities=15% Similarity=0.161 Sum_probs=214.7
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcC--CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK--KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK 82 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~--~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~ 82 (323)
+++++++.+.|++ .++..+++.|.++++.++.+ +++++.+|||+|||..+...+...+.- -..+
T Consensus 10 ~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~-------------~~~~ 75 (395)
T 3pey_A 10 LGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP-------------EDAS 75 (395)
T ss_dssp SCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT-------------TCCS
T ss_pred CCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc-------------CCCC
Confidence 5678888888876 68999999999999999987 899999999999997655444331100 0134
Q ss_pred CcEEEEccchh-------hhhhc----Cee--e-------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceE
Q psy4493 83 KDAIIIMPTGK-------LLKKK----KIC--L-------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARI 141 (323)
Q Consensus 83 ~~~lv~~pTgs-------~l~~~----~i~--l-------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~v 141 (323)
..+++++||.+ .+... ++. . ......++|+|+||+++.. .+.. .....+++++
T Consensus 76 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~------~~~~~~~~~~~~~~i 149 (395)
T 3pey_A 76 PQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLD------LMRRKLMQLQKIKIF 149 (395)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHH------HHHTTCBCCTTCCEE
T ss_pred ccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHH------HHHcCCcccccCCEE
Confidence 57999999998 22222 122 1 2223467999999999974 3332 3345689999
Q ss_pred EEeccccccccCCCchHHHHhHHHHHhhC-CCCCEEEEeecCChhHHHHHHHHhCCCCcEEEec---CCCCCCceeEEEe
Q psy4493 142 AIDEVHCCSSWGHDFRPDYQYLSILKTMF-PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKA---PFNRPNLFYEVRI 217 (323)
Q Consensus 142 VvDEah~~~~~~~~~r~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~~~~~~~~ 217 (323)
|+||||++.++. ++...+.. +.... ++.+++++|||+++.........+.. +..+.. ....+.+......
T Consensus 150 IiDEah~~~~~~-~~~~~~~~---~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 223 (395)
T 3pey_A 150 VLDEADNMLDQQ-GLGDQCIR---VKRFLPKDTQLVLFSATFADAVRQYAKKIVPN--ANTLELQTNEVNVDAIKQLYMD 223 (395)
T ss_dssp EEETHHHHHHST-THHHHHHH---HHHTSCTTCEEEEEESCCCHHHHHHHHHHSCS--CEEECCCGGGCSCTTEEEEEEE
T ss_pred EEEChhhhcCcc-ccHHHHHH---HHHhCCCCcEEEEEEecCCHHHHHHHHHhCCC--CeEEEccccccccccccEEEEE
Confidence 999999987631 35554433 33333 47899999999998876655555433 233322 2223333333333
Q ss_pred cCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ce
Q psy4493 218 KPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SI 279 (323)
Q Consensus 218 ~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~ 279 (323)
. .....+...+..++. ...++++||||++++.|+.+++.|++.++.+..+||+++..+ |+
T Consensus 224 ~-~~~~~~~~~l~~~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 301 (395)
T 3pey_A 224 C-KNEADKFDVLTELYG-LMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN 301 (395)
T ss_dssp C-SSHHHHHHHHHHHHT-TTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG
T ss_pred c-CchHHHHHHHHHHHH-hccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC
Confidence 2 234556666766665 346789999999999999999999999999999999999876 99
Q ss_pred eeecccccCCccEEEEccCCC------CHhHHHHHhccCCCCCCCCCCC
Q psy4493 280 AFGLGIDKPNVRFVIHHCLSK------SMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 280 ~~~~Gid~~~v~~Vi~~~~p~------~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
++++|+|+|++++||++|+|. +..+|+||+||+||.|+.|.|+
T Consensus 302 ~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~ 350 (395)
T 3pey_A 302 VLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAI 350 (395)
T ss_dssp GGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEE
T ss_pred hhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEE
Confidence 999999999999999999999 9999999999999999999875
No 9
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.5e-40 Score=299.30 Aligned_cols=289 Identities=13% Similarity=0.128 Sum_probs=214.5
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCc
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD 84 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~ 84 (323)
++.++++.+.|++ +++..++++|.++++.++.++++++.+|||+|||......+...+.- ...+..
T Consensus 13 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-------------~~~~~~ 78 (391)
T 1xti_A 13 FLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-------------VTGQVS 78 (391)
T ss_dssp GCCCHHHHHHHHH-HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC-------------CTTCCC
T ss_pred cCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc-------------cCCCee
Confidence 5567778888866 69999999999999999999999999999999997654444321100 012457
Q ss_pred EEEEccchh-------hhhhc-----Ceee--e------------ccCCCeeEEEEcccccccchhHHHHHHH-HHhhCC
Q psy4493 85 AIIIMPTGK-------LLKKK-----KICL--M------------TESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGC 137 (323)
Q Consensus 85 ~lv~~pTgs-------~l~~~-----~i~l--~------------~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~ 137 (323)
+++++||.+ .+... ++.. . ...+.++|+|+||+++.. .+.. .....+
T Consensus 79 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~------~~~~~~~~~~~ 152 (391)
T 1xti_A 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILA------LARNKSLNLKH 152 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHH------HHHTTSSCCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHH------HHHcCCccccc
Confidence 999999988 22221 3331 0 112346999999999974 3332 234568
Q ss_pred cceEEEeccccccccCCCchHHHHhHHHHHhhC-CCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecC----CCCCCce
Q psy4493 138 LARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF-PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAP----FNRPNLF 212 (323)
Q Consensus 138 v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~----~~~~~~~ 212 (323)
++++|+||||++.++. +++..+.. +.... +..+++++|||+++.....+...++ ++..+... ....++.
T Consensus 153 ~~~vViDEaH~~~~~~-~~~~~~~~---~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 226 (391)
T 1xti_A 153 IKHFILDECDKMLEQL-DMRRDVQE---IFRMTPHEKQVMMFSATLSKEIRPVCRKFMQ--DPMEIFVDDETKLTLHGLQ 226 (391)
T ss_dssp CSEEEECSHHHHTSSH-HHHHHHHH---HHHTSCSSSEEEEEESSCCSTHHHHHHHHCS--SCEEEECCCCCCCCCTTCE
T ss_pred cCEEEEeCHHHHhhcc-chHHHHHH---HHhhCCCCceEEEEEeeCCHHHHHHHHHHcC--CCeEEEecCccccCcccce
Confidence 9999999999997741 34444433 33333 4789999999999987776666654 33333221 1223333
Q ss_pred eEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc---------------
Q psy4493 213 YEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------- 277 (323)
Q Consensus 213 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~--------------- 277 (323)
..+.... ..++...+.+++.. ..++++||||++++.|+.+++.|.+.|+.+..+||+++..+
T Consensus 227 ~~~~~~~--~~~~~~~l~~~l~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 303 (391)
T 1xti_A 227 QYYVKLK--DNEKNRKLFDLLDV-LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRI 303 (391)
T ss_dssp EEEEECC--GGGHHHHHHHHHHH-SCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSE
T ss_pred EEEEEcC--chhHHHHHHHHHHh-cCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcE
Confidence 3333322 34566777777774 37789999999999999999999999999999999999776
Q ss_pred ---ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 ---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 ---T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++++|+|+|++++||++|+|.+..+|+||+||+||.|+.|.|+
T Consensus 304 lv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~ 351 (391)
T 1xti_A 304 LVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI 351 (391)
T ss_dssp EEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEE
T ss_pred EEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEE
Confidence 999999999999999999999999999999999999999999875
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=9.4e-40 Score=298.42 Aligned_cols=291 Identities=14% Similarity=0.103 Sum_probs=212.7
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcC--CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK--KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK 82 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~--~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~ 82 (323)
++.++.+.+.|++ +++..+++.|.++++.++.+ +++++.+|||+|||..+...+...+.- -..+
T Consensus 30 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-------------~~~~ 95 (412)
T 3fht_A 30 LRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP-------------ANKY 95 (412)
T ss_dssp GTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT-------------TSCS
T ss_pred CCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh-------------cCCC
Confidence 3456677777765 79999999999999999987 899999999999997654444321100 0123
Q ss_pred CcEEEEccchh-------hhhhc-----Cee--e--------eccCCCeeEEEEcccccccchhHHHHHHH--HHhhCCc
Q psy4493 83 KDAIIIMPTGK-------LLKKK-----KIC--L--------MTESSSLKLLYVSPEKLAKSKSFMTKLQK--MYKAGCL 138 (323)
Q Consensus 83 ~~~lv~~pTgs-------~l~~~-----~i~--l--------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~--~~~~~~v 138 (323)
..+++++||.+ .+... +.. . .......+|+|+||+++.. .+.. .....++
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~------~~~~~~~~~~~~~ 169 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLD------WCSKLKFIDPKKI 169 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHH------HHTTSCSSCGGGC
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHH------HHHhcCCcChhhC
Confidence 46999999998 12221 122 1 1223457999999999964 3322 2334589
Q ss_pred ceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecC---CCCCCceeEE
Q psy4493 139 ARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAP---FNRPNLFYEV 215 (323)
Q Consensus 139 ~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~~~~~~~~~ 215 (323)
+++|+||||++.++. .+...+..+ .....++.+++++|||+++.........+ .++..+... ...+.+....
T Consensus 170 ~~iViDEah~~~~~~-~~~~~~~~~--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 244 (412)
T 3fht_A 170 KVFVLDEADVMIATQ-GHQDQSIRI--QRMLPRNCQMLLFSATFEDSVWKFAQKVV--PDPNVIKLKREEETLDTIKQYY 244 (412)
T ss_dssp CEEEEETHHHHHSTT-TTHHHHHHH--HHTSCTTCEEEEEESCCCHHHHHHHHHHS--SSCEEECCCGGGSSCTTEEEEE
T ss_pred cEEEEeCHHHHhhcC-CcHHHHHHH--HhhCCCCceEEEEEeecCHHHHHHHHHhc--CCCeEEeeccccccccCceEEE
Confidence 999999999987632 354444332 33333478999999999998776666664 334444332 2233333333
Q ss_pred EecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------
Q psy4493 216 RIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------ 277 (323)
Q Consensus 216 ~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------ 277 (323)
.. ......+...+.+++.. ..++++||||++++.|+.+++.|.+.++.+..+||+++..+
T Consensus 245 ~~-~~~~~~~~~~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 322 (412)
T 3fht_A 245 VL-CSSRDEKFQALCNLYGA-ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVT 322 (412)
T ss_dssp EE-CSSHHHHHHHHHHHHHH-HSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEE
T ss_pred EE-cCChHHHHHHHHHHHhh-cCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEE
Confidence 32 23345677777777764 36789999999999999999999999999999999999877
Q ss_pred ceeeecccccCCccEEEEccCC------CCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 SIAFGLGIDKPNVRFVIHHCLS------KSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 T~~~~~Gid~~~v~~Vi~~~~p------~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++++|+|+|++++||++|+| .+..+|+||+||+||.|+.|.|+
T Consensus 323 T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~ 373 (412)
T 3fht_A 323 TNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAV 373 (412)
T ss_dssp CGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEE
T ss_pred cCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEE
Confidence 9999999999999999999999 57789999999999999999875
No 11
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=8.1e-40 Score=297.94 Aligned_cols=288 Identities=18% Similarity=0.162 Sum_probs=213.4
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCc
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD 84 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~ 84 (323)
++.++++.+.|.+ .++..++++|.++++.++.++++++.+|||+|||......+...+.- -..+..
T Consensus 26 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~-------------~~~~~~ 91 (400)
T 1s2m_A 26 FYLKRELLMGIFE-AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP-------------KLNKIQ 91 (400)
T ss_dssp GCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT-------------TSCSCC
T ss_pred cCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh-------------ccCCcc
Confidence 4456667777765 68899999999999999999999999999999997654443321100 013457
Q ss_pred EEEEccchh-------hhhh----cCeee-------------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcc
Q psy4493 85 AIIIMPTGK-------LLKK----KKICL-------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLA 139 (323)
Q Consensus 85 ~lv~~pTgs-------~l~~----~~i~l-------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~ 139 (323)
+++++||.+ .+.. .++.. ......++|+|+||+++.. .+.. .....+++
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~------~~~~~~~~~~~~~ 165 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLD------LASRKVADLSDCS 165 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHH------HHHTTCSCCTTCC
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHH------HHHhCCcccccCC
Confidence 999999988 2221 23331 1223567999999999864 3332 23456899
Q ss_pred eEEEeccccccccCCCchHHHHhHHHHHhhCC-CCCEEEEeecCChhHHHHHHHHhCCCCcEEEec--CCCCCCceeEEE
Q psy4493 140 RIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP-DVPILGLTATATTKVMLDVQKMLQIEDCVVIKA--PFNRPNLFYEVR 216 (323)
Q Consensus 140 ~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~--~~~~~~~~~~~~ 216 (323)
++|+||||++.+. +++..+ ..+....+ ..+++++|||++....+.+...++. +..+.. ....+++.....
T Consensus 166 ~vIiDEaH~~~~~--~~~~~~---~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 238 (400)
T 1s2m_A 166 LFIMDEADKMLSR--DFKTII---EQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHK--PYEINLMEELTLKGITQYYA 238 (400)
T ss_dssp EEEEESHHHHSSH--HHHHHH---HHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSS--CEEESCCSSCBCTTEEEEEE
T ss_pred EEEEeCchHhhhh--chHHHH---HHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCC--CeEEEeccccccCCceeEEE
Confidence 9999999988763 244433 33444443 7799999999998887777766543 333322 223344433333
Q ss_pred ecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------c
Q psy4493 217 IKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------S 278 (323)
Q Consensus 217 ~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T 278 (323)
... ...+...+..++.. ..++++||||++++.++.+++.|.+.|+.+..+||+++..+ |
T Consensus 239 ~~~--~~~k~~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T 315 (400)
T 1s2m_A 239 FVE--ERQKLHCLNTLFSK-LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS 315 (400)
T ss_dssp ECC--GGGHHHHHHHHHHH-SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEES
T ss_pred Eec--hhhHHHHHHHHHhh-cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc
Confidence 322 34566667777764 36789999999999999999999999999999999999876 9
Q ss_pred eeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 279 ~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+++++|+|+|++++||++|+|.+..+|+||+||+||.|+.|.|+
T Consensus 316 ~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~ 359 (400)
T 1s2m_A 316 DLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAI 359 (400)
T ss_dssp SCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEE
T ss_pred CccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEE
Confidence 99999999999999999999999999999999999999999875
No 12
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.4e-40 Score=302.42 Aligned_cols=286 Identities=14% Similarity=0.175 Sum_probs=211.0
Q ss_pred cHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEE
Q psy4493 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAII 87 (323)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv 87 (323)
++++.+.|+ .+++..++++|.++++.++.++++++.+|||+|||..+...+...+.. -..+..+++
T Consensus 45 ~~~l~~~l~-~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-------------~~~~~~~li 110 (410)
T 2j0s_A 45 REDLLRGIY-AYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI-------------QVRETQALI 110 (410)
T ss_dssp CHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT-------------TSCSCCEEE
T ss_pred CHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh-------------ccCCceEEE
Confidence 456666664 468999999999999999999999999999999997765554432210 013567999
Q ss_pred Eccchh-------hhhhc----Ceee-------------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceEE
Q psy4493 88 IMPTGK-------LLKKK----KICL-------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARIA 142 (323)
Q Consensus 88 ~~pTgs-------~l~~~----~i~l-------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~vV 142 (323)
++||.+ .+... ++.. ......++|+|+||+++.+ .+.. .....+++++|
T Consensus 111 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~------~l~~~~~~~~~~~~vV 184 (410)
T 2j0s_A 111 LAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFD------MIRRRSLRTRAIKMLV 184 (410)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHH------HHHTTSSCCTTCCEEE
T ss_pred EcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHH------HHHhCCccHhheeEEE
Confidence 999998 22222 2221 1112346899999999974 3333 33456799999
Q ss_pred EeccccccccCCCchHHHHhHHHHHhhC-CCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecC---CCCCCceeEEEec
Q psy4493 143 IDEVHCCSSWGHDFRPDYQYLSILKTMF-PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAP---FNRPNLFYEVRIK 218 (323)
Q Consensus 143 vDEah~~~~~~~~~r~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~~~~~~~~~~~~ 218 (323)
+||||++.+++ ++..+.. +.... ++.+++++|||++++..+.+..+ +.++..+... ...+++...+...
T Consensus 185 iDEah~~~~~~--~~~~~~~---i~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (410)
T 2j0s_A 185 LDEADEMLNKG--FKEQIYD---VYRYLPPATQVVLISATLPHEILEMTNKF--MTDPIRILVKRDELTLEGIKQFFVAV 257 (410)
T ss_dssp EETHHHHTSTT--THHHHHH---HHTTSCTTCEEEEEESCCCHHHHTTGGGT--CSSCEEECCCGGGCSCTTEEEEEEEE
T ss_pred EccHHHHHhhh--hHHHHHH---HHHhCccCceEEEEEcCCCHHHHHHHHHH--cCCCEEEEecCccccCCCceEEEEEe
Confidence 99999998865 6665443 33333 47899999999998764433333 2344433321 2233443333333
Q ss_pred CCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------cee
Q psy4493 219 PAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIA 280 (323)
Q Consensus 219 ~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~ 280 (323)
.. ...+...+.+++... ...++||||++++.++.+++.|.+.|+.+..+||++++.+ |++
T Consensus 258 ~~-~~~k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 335 (410)
T 2j0s_A 258 ER-EEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV 335 (410)
T ss_dssp SS-TTHHHHHHHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGG
T ss_pred Cc-HHhHHHHHHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECCh
Confidence 32 234667777777643 5679999999999999999999999999999999999876 999
Q ss_pred eecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 281 FGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 281 ~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+++|+|+|++++||++|+|.+...|+||+||+||.|+.|.|+
T Consensus 336 ~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~ 377 (410)
T 2j0s_A 336 WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAI 377 (410)
T ss_dssp GSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEE
T ss_pred hhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEE
Confidence 999999999999999999999999999999999999999875
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.6e-38 Score=285.68 Aligned_cols=286 Identities=18% Similarity=0.237 Sum_probs=214.5
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcC-CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCC
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK-KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKK 83 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~-~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~ 83 (323)
+++++.+.+.|++ .++..+++.|.++++.++.+ +++++.+|||+|||..+...+...+.- ..+.
T Consensus 11 ~~l~~~~~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~--------------~~~~ 75 (367)
T 1hv8_A 11 LNLSDNILNAIRN-KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE--------------NNGI 75 (367)
T ss_dssp SSCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS--------------SSSC
T ss_pred cCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc--------------cCCC
Confidence 5677888888875 68999999999999999988 689999999999997655444331100 1356
Q ss_pred cEEEEccchh-------hhhh----cCeee---e---------ccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcc
Q psy4493 84 DAIIIMPTGK-------LLKK----KKICL---M---------TESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLA 139 (323)
Q Consensus 84 ~~lv~~pTgs-------~l~~----~~i~l---~---------~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~ 139 (323)
.+++++||.+ .+.. .++.+ . ......+|+|+||+++.. .+.. .....+++
T Consensus 76 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~------~~~~~~~~~~~~~ 149 (367)
T 1hv8_A 76 EAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILD------HINRGTLNLKNVK 149 (367)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHH------HHHTTCSCTTSCC
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHH------HHHcCCcccccCC
Confidence 7999999988 2221 12221 0 011257899999999864 3332 23456889
Q ss_pred eEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecC
Q psy4493 140 RIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKP 219 (323)
Q Consensus 140 ~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (323)
++|+||||++.+++ +...+..+ +....++.+++++|||+++...+.+..+++ ++..+..... .++.......
T Consensus 150 ~iIiDEah~~~~~~--~~~~~~~~--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~- 221 (367)
T 1hv8_A 150 YFILDEADEMLNMG--FIKDVEKI--LNACNKDKRILLFSATMPREILNLAKKYMG--DYSFIKAKIN-ANIEQSYVEV- 221 (367)
T ss_dssp EEEEETHHHHHTTT--THHHHHHH--HHTSCSSCEEEEECSSCCHHHHHHHHHHCC--SEEEEECCSS-SSSEEEEEEC-
T ss_pred EEEEeCchHhhhhc--hHHHHHHH--HHhCCCCceEEEEeeccCHHHHHHHHHHcC--CCeEEEecCC-CCceEEEEEe-
Confidence 99999999998864 55544332 333335789999999999987766666643 3344433322 2333333322
Q ss_pred CchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceee
Q psy4493 220 AAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 281 (323)
Q Consensus 220 ~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~ 281 (323)
...++...+.+.+.. .+.++||||++++.++.+++.|++.|+.+..+||+++..+ |+++
T Consensus 222 -~~~~~~~~l~~~l~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 298 (367)
T 1hv8_A 222 -NENERFEALCRLLKN--KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVM 298 (367)
T ss_dssp -CGGGHHHHHHHHHCS--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTH
T ss_pred -ChHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChh
Confidence 245677788888864 6789999999999999999999999999999999999876 9999
Q ss_pred ecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 282 GLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 282 ~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
++|+|+|++++||++++|.+..+|+||+||+||.|+.|.|+
T Consensus 299 ~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~ 339 (367)
T 1hv8_A 299 SRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAI 339 (367)
T ss_dssp HHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEE
T ss_pred hcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEE
Confidence 99999999999999999999999999999999999999875
No 14
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=3.1e-40 Score=307.68 Aligned_cols=289 Identities=16% Similarity=0.120 Sum_probs=117.6
Q ss_pred CCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcC--CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCC
Q psy4493 6 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK--KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKK 83 (323)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~--~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~ 83 (323)
+.++++.+.|++ +++..+++.|.++++.++.+ +++++.+|||+|||..+...+...+.- -..+.
T Consensus 98 ~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~-------------~~~~~ 163 (479)
T 3fmp_B 98 RLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP-------------ANKYP 163 (479)
T ss_dssp TCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT-------------TSCSC
T ss_pred CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh-------------cCCCC
Confidence 346677777776 79999999999999999987 889999999999998765554432110 00123
Q ss_pred cEEEEccchhh----------hhh----cCeee--------eccCCCeeEEEEcccccccchhHHHHHHH--HHhhCCcc
Q psy4493 84 DAIIIMPTGKL----------LKK----KKICL--------MTESSSLKLLYVSPEKLAKSKSFMTKLQK--MYKAGCLA 139 (323)
Q Consensus 84 ~~lv~~pTgs~----------l~~----~~i~l--------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~--~~~~~~v~ 139 (323)
.+++++||.+. +.. .++.+ .......+|+|+||+++.+ .+.. .....+++
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~------~l~~~~~~~~~~~~ 237 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLD------WCSKLKFIDPKKIK 237 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHH------HHTTSCCCCGGGCC
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHH------HHHhcCCcCcccCC
Confidence 69999999981 111 12221 1223356899999999964 3332 23346899
Q ss_pred eEEEeccccccccCCCchHHHHhHHHHHhhC-CCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCC---CCCceeEE
Q psy4493 140 RIAIDEVHCCSSWGHDFRPDYQYLSILKTMF-PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFN---RPNLFYEV 215 (323)
Q Consensus 140 ~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---~~~~~~~~ 215 (323)
+|||||||++.+.. .+...... +.... ++.|++++|||+++.........+ .++..+..... ...+...+
T Consensus 238 ~iViDEah~~~~~~-~~~~~~~~---i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~ 311 (479)
T 3fmp_B 238 VFVLDEADVMIATQ-GHQDQSIR---IQRMLPRNCQMLLFSATFEDSVWKFAQKVV--PDPNVIKLKREEETLDTIKQYY 311 (479)
T ss_dssp EEEECCHHHHHTST-THHHHHHH---HHTTSCTTSEEEEEESCCCHHHHHHHHHHS--SSEEEEEEC-------------
T ss_pred EEEEECHHHHhhcC-CcHHHHHH---HHhhCCccceEEEEeCCCCHHHHHHHHHHc--CCCeEEeccccccCcCCceEEE
Confidence 99999999987632 35444333 33333 478999999999998766555553 44554443222 12222111
Q ss_pred EecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------
Q psy4493 216 RIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------ 277 (323)
Q Consensus 216 ~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------ 277 (323)
.... ....+...+..++.. ....++||||++++.|+.+++.|...++.+..+||++++.+
T Consensus 312 ~~~~-~~~~~~~~l~~~~~~-~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~ 389 (479)
T 3fmp_B 312 VLCS-SRDEKFQALCNLYGA-ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVT 389 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeC-CHHHHHHHHHHHHhh-ccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 1111 123455556665552 35679999999999999999999999999999999999887
Q ss_pred ceeeecccccCCccEEEEccCCC------CHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 SIAFGLGIDKPNVRFVIHHCLSK------SMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 T~~~~~Gid~~~v~~Vi~~~~p~------~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++++|+|+|++++||+||+|. +..+|+||+||+||.|+.|.|+
T Consensus 390 T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i 440 (479)
T 3fmp_B 390 TNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAV 440 (479)
T ss_dssp ---------------------------------------------------
T ss_pred ccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEE
Confidence 99999999999999999999994 6689999999999999999886
No 15
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=9.9e-40 Score=296.57 Aligned_cols=290 Identities=16% Similarity=0.173 Sum_probs=119.4
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCc
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD 84 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~ 84 (323)
+++++++.+.|.+ +++..++++|.++++.++.++++++.+|||+|||......+...+.- ...+..
T Consensus 26 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~-------------~~~~~~ 91 (394)
T 1fuu_A 26 MELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-------------SVKAPQ 91 (394)
T ss_dssp GCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT-------------TCCSCC
T ss_pred cCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc-------------cCCCCC
Confidence 4567788888865 79999999999999999999999999999999996644333221100 013567
Q ss_pred EEEEccchh-------hhhh----cCeee--e----------ccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcce
Q psy4493 85 AIIIMPTGK-------LLKK----KKICL--M----------TESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLAR 140 (323)
Q Consensus 85 ~lv~~pTgs-------~l~~----~~i~l--~----------~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~ 140 (323)
+++++||.+ .+.+ .++.+ . .....++|+|+||+++.. .+.. .....++++
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~------~~~~~~~~~~~~~~ 165 (394)
T 1fuu_A 92 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFD------NIQRRRFRTDKIKM 165 (394)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHH------HHHTTSSCCTTCCE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHH------HHHhCCcchhhCcE
Confidence 999999988 2221 23331 0 001157899999999864 2322 234568999
Q ss_pred EEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCC---CCCCceeEEEe
Q psy4493 141 IAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPF---NRPNLFYEVRI 217 (323)
Q Consensus 141 vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~~~~~~~~~~~ 217 (323)
+|+||||++.+++ ++..+..+ +....++.+++++|||+++...+.+..+++ ++..+.... ..+++......
T Consensus 166 vIiDEah~~~~~~--~~~~~~~~--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 239 (394)
T 1fuu_A 166 FILDEADEMLSSG--FKEQIYQI--FTLLPPTTQVVLLSATMPNDVLEVTTKFMR--NPVRILVKKDELTLEGIKQFYVN 239 (394)
T ss_dssp EEEETHHHHHHTT--CHHHHHHH--HHHSCTTCEEEEECSSCCHHHHHHHHHHCC--SCEEEEECC--------------
T ss_pred EEEEChHHhhCCC--cHHHHHHH--HHhCCCCceEEEEEEecCHHHHHHHHHhcC--CCeEEEecCccccCCCceEEEEE
Confidence 9999999998754 66665443 333335789999999999887666666643 333332211 12222211111
Q ss_pred cCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ce
Q psy4493 218 KPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SI 279 (323)
Q Consensus 218 ~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~ 279 (323)
.. ....+...+.+++.. ..++++||||++++.++.+++.|++.++.+..+||+++..+ |+
T Consensus 240 ~~-~~~~~~~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 317 (394)
T 1fuu_A 240 VE-EEEYKYECLTDLYDS-ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 317 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cC-chhhHHHHHHHHHhc-CCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC
Confidence 11 112244555555543 35679999999999999999999999999999999999876 99
Q ss_pred eeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 280 ~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
++++|+|+|++++||++|+|.+..+|+||+||+||.|+.|.|+
T Consensus 318 ~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~ 360 (394)
T 1fuu_A 318 LLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAI 360 (394)
T ss_dssp -------------------------------------------
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEE
Confidence 9999999999999999999999999999999999999999886
No 16
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.5e-38 Score=281.35 Aligned_cols=273 Identities=13% Similarity=0.160 Sum_probs=203.3
Q ss_pred cHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEE
Q psy4493 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAII 87 (323)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv 87 (323)
++++.+.|+ .+|+..++++|.++++.+..++++++.+|||+|||..+...+ +..+..+++
T Consensus 2 ~~~i~~~l~-~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~-------------------~~~~~~~li 61 (337)
T 2z0m_A 2 NEKIEQAIR-EMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPI-------------------LELGMKSLV 61 (337)
T ss_dssp CHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH-------------------HHHTCCEEE
T ss_pred CHHHHHHHH-HcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHH-------------------HhhcCCEEE
Confidence 345666675 479999999999999999999999999999999996543332 224678999
Q ss_pred Eccchh-------hhhh----cCeee------------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceEEE
Q psy4493 88 IMPTGK-------LLKK----KKICL------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARIAI 143 (323)
Q Consensus 88 ~~pTgs-------~l~~----~~i~l------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~vVv 143 (323)
++||.+ .+.+ .++.+ ......++|+|+||+++.. .+.. .....+++++|+
T Consensus 62 v~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~------~~~~~~~~~~~~~~iVi 135 (337)
T 2z0m_A 62 VTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLD------LWSKGVIDLSSFEIVII 135 (337)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHH------HHHTTSCCGGGCSEEEE
T ss_pred EeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHH------HHHcCCcchhhCcEEEE
Confidence 999988 2222 12221 0112347899999999974 3332 223467899999
Q ss_pred eccccccccCCCchHHHHhHHHHHhhCC-CCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecCCch
Q psy4493 144 DEVHCCSSWGHDFRPDYQYLSILKTMFP-DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQ 222 (323)
Q Consensus 144 DEah~~~~~~~~~r~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (323)
||||++.+++ +...+.. +....+ ..+++++|||+++...+.+..+++ ++..+......+++...........
T Consensus 136 DEah~~~~~~--~~~~~~~---~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (337)
T 2z0m_A 136 DEADLMFEMG--FIDDIKI---ILAQTSNRKITGLFSATIPEEIRKVVKDFIT--NYEEIEACIGLANVEHKFVHVKDDW 208 (337)
T ss_dssp ESHHHHHHTT--CHHHHHH---HHHHCTTCSEEEEEESCCCHHHHHHHHHHSC--SCEEEECSGGGGGEEEEEEECSSSS
T ss_pred EChHHhhccc--cHHHHHH---HHhhCCcccEEEEEeCcCCHHHHHHHHHhcC--CceeeecccccCCceEEEEEeChHH
Confidence 9999998865 5554433 334444 667888999999988777777653 3444444444455554444444333
Q ss_pred hHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeeecc
Q psy4493 223 KDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 284 (323)
Q Consensus 223 ~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~~G 284 (323)
... .+.+. ...++++||||++++.++.+++.|. ++..+||+++..+ |+++++|
T Consensus 209 ~~~----~~~~~-~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 279 (337)
T 2z0m_A 209 RSK----VQALR-ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRG 279 (337)
T ss_dssp HHH----HHHHH-TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTT
T ss_pred HHH----HHHHH-hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccC
Confidence 322 23343 2377899999999999999999886 4889999999877 9999999
Q ss_pred cccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 285 IDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 285 id~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+|+|++++||++|+|.|..+|+||+||+||.|+.|.|+
T Consensus 280 id~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~ 317 (337)
T 2z0m_A 280 LDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAI 317 (337)
T ss_dssp CCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEE
T ss_pred CCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEE
Confidence 99999999999999999999999999999999999875
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-38 Score=294.36 Aligned_cols=276 Identities=13% Similarity=0.133 Sum_probs=176.1
Q ss_pred CCCCCChhHHHHHHHHhcC--CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh----
Q psy4493 20 NLTDFRPNQLAAINIALLK--KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK---- 93 (323)
Q Consensus 20 ~~~~~~~~Q~~~~~~~~~~--~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs---- 93 (323)
++..+++.|.++++.++.+ +++++.+|||+|||......+...+.- -..+..+++++||.+
T Consensus 138 g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~-------------~~~~~~vLvl~P~~~L~~Q 204 (508)
T 3fho_A 138 XXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDA-------------SVPKPQAICLAPSRELARQ 204 (508)
T ss_dssp -CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCT-------------TCCSCCEEEECSCHHHHHH
T ss_pred cccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHh-------------CCCCceEEEEECcHHHHHH
Confidence 6677999999999999987 899999999999997654444331100 012347999999998
Q ss_pred ---hhhhc----Ceee---------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceEEEeccccccccCCCc
Q psy4493 94 ---LLKKK----KICL---------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARIAIDEVHCCSSWGHDF 156 (323)
Q Consensus 94 ---~l~~~----~i~l---------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~vVvDEah~~~~~~~~~ 156 (323)
.+... ++.. ......++|+|+||+++.. .+.. .....++++|||||||++.++. ++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~------~l~~~~~~~~~~~lIIiDEaH~~~~~~-~~ 277 (508)
T 3fho_A 205 IMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMD------LMKRRQLDARDIKVFVLDEADNMLDQQ-GL 277 (508)
T ss_dssp HHHHHHHHSTTSSCCEEC----------CCCCSEEEECHHHHHH------HHHTTCSCCTTCCEEEECCHHHHTTC---C
T ss_pred HHHHHHHhCCccCeeEEEEeCCcccccccCCCCEEEECHHHHHH------HHHcCCccccCCCEEEEechhhhcccC-Cc
Confidence 22222 1111 2233468999999999864 3332 2345689999999999987631 35
Q ss_pred hHHHHhHHHHHhhC-CCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecC---CCCCCceeEEEecCCchhHHHHHHHHH
Q psy4493 157 RPDYQYLSILKTMF-PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAP---FNRPNLFYEVRIKPAAQKDCLDELADL 232 (323)
Q Consensus 157 r~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~ 232 (323)
...+.. +.... ++.+++++|||+++........+++ ++..+... ...+.+........ ....+...+.++
T Consensus 278 ~~~~~~---i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~l 351 (508)
T 3fho_A 278 GDQSMR---IKHLLPRNTQIVLFSATFSERVEKYAERFAP--NANEIRLKTEELSVEGIKQLYMDCQ-SEEHKYNVLVEL 351 (508)
T ss_dssp HHHHHH---HHHHSCTTCEEEEEESCCSTHHHHHHHHHST--TCEEECCCCCC----CCCCEEEEC---CHHHHHHHHHH
T ss_pred HHHHHH---HHHhCCcCCeEEEEeCCCCHHHHHHHHHhcC--CCeEEEeccccCCcccceEEEEECC-chHHHHHHHHHH
Confidence 554443 33333 4789999999999876655455433 22333221 12223332222222 234566667776
Q ss_pred HHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeeecccccCCccEEE
Q psy4493 233 MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVI 294 (323)
Q Consensus 233 l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi 294 (323)
+.. ..++++||||++++.|+.+++.|.+.+..+..+||+++..+ |+++++|+|+|++++||
T Consensus 352 l~~-~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI 430 (508)
T 3fho_A 352 YGL-LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVV 430 (508)
T ss_dssp HC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEE
T ss_pred HHh-cCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEE
Confidence 653 36789999999999999999999999999999999999876 99999999999999999
Q ss_pred EccCC------CCHhHHHHHhccCCCCCCCCCCC
Q psy4493 295 HHCLS------KSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 295 ~~~~p------~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
++|.| .+..+|+||+||+||.|+.|.|+
T Consensus 431 ~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i 464 (508)
T 3fho_A 431 NYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSI 464 (508)
T ss_dssp C----CC-----CTHHHHHTTSCCC-----CEEE
T ss_pred EECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEE
Confidence 99999 78999999999999999999875
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=4.5e-38 Score=287.86 Aligned_cols=279 Identities=16% Similarity=0.112 Sum_probs=197.9
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEc
Q psy4493 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIM 89 (323)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~ 89 (323)
++.+.+++.+++ .+++.|.++++.++.++++++.+|||+|||......+ +.....+..+++++
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~----------------~~~~~~~~~~lil~ 71 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTA----------------LWLARKGKKSALVF 71 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHH----------------HHHHTTTCCEEEEE
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHH----------------HHHhcCCCEEEEEE
Confidence 567788888888 6789999999999999999999999999996433222 22224677899999
Q ss_pred cchh-------hhhh---cCeee---e--------------ccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEE
Q psy4493 90 PTGK-------LLKK---KKICL---M--------------TESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIA 142 (323)
Q Consensus 90 pTgs-------~l~~---~~i~l---~--------------~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vV 142 (323)
||.+ .+.. .++.+ . ...+.++|+|+||+++.+ .+.. ....+++++|
T Consensus 72 Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~------~l~~-~~~~~~~~iV 144 (414)
T 3oiy_A 72 PTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSK------NREK-LSQKRFDFVF 144 (414)
T ss_dssp SSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHH------CHHH-HTTCCCSEEE
T ss_pred CCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHH------HHHH-hccccccEEE
Confidence 9999 3333 34442 0 012348999999999974 2222 3456899999
Q ss_pred EeccccccccC---------CCchHH-HHhHHHHHh------h---CCCCCEEEEeec-CChhHHHHHH-HHhCCCCcEE
Q psy4493 143 IDEVHCCSSWG---------HDFRPD-YQYLSILKT------M---FPDVPILGLTAT-ATTKVMLDVQ-KMLQIEDCVV 201 (323)
Q Consensus 143 vDEah~~~~~~---------~~~r~~-~~~l~~l~~------~---~~~~~~i~lSAT-~~~~~~~~i~-~~l~~~~~~~ 201 (323)
+||||++.+|+ .+|++. +..+..... . .++.+++++||| .++.....+. ..++....
T Consensus 145 iDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~-- 222 (414)
T 3oiy_A 145 VDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVG-- 222 (414)
T ss_dssp ESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSS--
T ss_pred EeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcC--
Confidence 99999988765 557776 333322211 0 057899999999 4544432333 33332211
Q ss_pred EecCCCCCCceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEE-eecCCCCC-----
Q psy4493 202 IKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVS-AYHAKLES----- 275 (323)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~-~~h~~~~~----- 275 (323)
......+++...+... ++...+.+++.. .+.++||||++++.|+.+++.|.+.|+.+. .+||....
T Consensus 223 -~~~~~~~~i~~~~~~~-----~~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~r~~~~f~ 294 (414)
T 3oiy_A 223 -RLVSVARNITHVRISS-----RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKNFEDFK 294 (414)
T ss_dssp -CCCCCCCSEEEEEESS-----CCHHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCHHHHHHHHH
T ss_pred -ccccccccchheeecc-----CHHHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCcchHHHHHh
Confidence 1122233343333322 245566677765 458999999999999999999999999998 99984211
Q ss_pred -Cc----------ceeeecccccCC-ccEEEEccCC--CCHhHHHHHhccCCCCC----CCCCCC
Q psy4493 276 -NV----------SIAFGLGIDKPN-VRFVIHHCLS--KSMENFYQVSIAFGLGK----HSFRSR 322 (323)
Q Consensus 276 -~~----------T~~~~~Gid~~~-v~~Vi~~~~p--~~~~~~~qr~GR~gR~g----~~g~~~ 322 (323)
.+ |+++++|+|+|+ |++||+||+| .+..+|+||+||+||.| +.|.|+
T Consensus 295 ~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i 359 (414)
T 3oiy_A 295 VGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSV 359 (414)
T ss_dssp TTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEE
T ss_pred CCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEE
Confidence 00 589999999999 9999999999 99999999999999998 467664
No 19
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3e-35 Score=286.44 Aligned_cols=282 Identities=17% Similarity=0.133 Sum_probs=198.8
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHH-HhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHh-cC
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINI-ALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIAL-LK 82 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~-~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~-~~ 82 (323)
++.++.+.+.+++ +++..+++.|.++++. +..++++++.+|||+|||..+...+.+ .+. .+
T Consensus 13 l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~----------------~~~~~~ 75 (715)
T 2va8_A 13 LKLPSNVIEIIKK-RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIIS----------------FLLKNG 75 (715)
T ss_dssp SSSCHHHHHHHHT-TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHH----------------HHHHSC
T ss_pred cCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHH----------------HHHHCC
Confidence 5567777777765 8999999999999998 677899999999999999776554432 223 46
Q ss_pred CcEEEEccchh-------h---hhhcCeee----------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceE
Q psy4493 83 KDAIIIMPTGK-------L---LKKKKICL----------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARI 141 (323)
Q Consensus 83 ~~~lv~~pTgs-------~---l~~~~i~l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~v 141 (323)
..+++++|+.+ . +...|+.+ .......+|+|+||+++.. .++. .....++++|
T Consensus 76 ~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~------~~~~~~~~l~~~~~v 149 (715)
T 2va8_A 76 GKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDS------LWRHRPEWLNEVNYF 149 (715)
T ss_dssp SEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHH------HHHHCCGGGGGEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHH------HHhCChhHhhccCEE
Confidence 78999999998 2 23345552 1112368999999999974 3333 3335689999
Q ss_pred EEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCcee--------
Q psy4493 142 AIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFY-------- 213 (323)
Q Consensus 142 VvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-------- 213 (323)
||||||++.+++ +...+.. +....++.++++||||+++ .+++.++++.. .+..+..+.++..
T Consensus 150 IiDE~H~l~~~~--~~~~l~~---i~~~~~~~~ii~lSATl~n--~~~~~~~l~~~---~~~~~~r~~~l~~~~~~~~~~ 219 (715)
T 2va8_A 150 VLDELHYLNDPE--RGPVVES---VTIRAKRRNLLALSATISN--YKQIAKWLGAE---PVATNWRPVPLIEGVIYPERK 219 (715)
T ss_dssp EECSGGGGGCTT--THHHHHH---HHHHHHTSEEEEEESCCTT--HHHHHHHHTCE---EEECCCCSSCEEEEEEEECSS
T ss_pred EEechhhcCCcc--cchHHHH---HHHhcccCcEEEEcCCCCC--HHHHHHHhCCC---ccCCCCCCCCceEEEEecCCc
Confidence 999999987643 3333333 3323338899999999987 36778888632 2222222212211
Q ss_pred ----EEEecCCc------hhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCC--------------------
Q psy4493 214 ----EVRIKPAA------QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRG-------------------- 263 (323)
Q Consensus 214 ----~~~~~~~~------~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~-------------------- 263 (323)
.+...... .......+.+.+. +++++||||+++++|+.+++.|.+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i 296 (715)
T 2va8_A 220 KKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS---KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDI 296 (715)
T ss_dssp TTEEEEEETTSCEEEEESSSHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTC
T ss_pred ccceeeecCcchhhhcccchHHHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHh
Confidence 11111100 1334455555553 67899999999999999999998642
Q ss_pred ----------------CeEEeecCCCCCCc------------------ceeeecccccCCccEEEE----cc-------C
Q psy4493 264 ----------------LRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIH----HC-------L 298 (323)
Q Consensus 264 ----------------~~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~----~~-------~ 298 (323)
..+..+||+|+.++ |+++++|+|+|++++||+ || .
T Consensus 297 ~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~ 376 (715)
T 2va8_A 297 EEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYD 376 (715)
T ss_dssp CSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC------------
T ss_pred hhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCC
Confidence 24899999999987 999999999999999999 99 8
Q ss_pred CCCHhHHHHHhccCCCCCC--CCCCC
Q psy4493 299 SKSMENFYQVSIAFGLGKH--SFRSR 322 (323)
Q Consensus 299 p~~~~~~~qr~GR~gR~g~--~g~~~ 322 (323)
|.|..+|+||+||+||.|. .|.|+
T Consensus 377 ~~s~~~~~Qr~GRaGR~g~~~~G~~~ 402 (715)
T 2va8_A 377 EIPIMEYKQMSGRAGRPGFDQIGESI 402 (715)
T ss_dssp --CHHHHHHHHTTBCCTTTCSCEEEE
T ss_pred cCCHHHHHHHhhhcCCCCCCCCceEE
Confidence 9999999999999999984 67664
No 20
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=8.5e-36 Score=290.35 Aligned_cols=284 Identities=19% Similarity=0.203 Sum_probs=202.3
Q ss_pred CCCCcHHHHHHHHHhcCCCCCChhHHHHHHH-HhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHh-c
Q psy4493 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINI-ALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIAL-L 81 (323)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~-~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~-~ 81 (323)
.++.++.+.+.+++ +++..++++|.++++. +..++++++.+|||+|||..+...+. ..+. .
T Consensus 5 ~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il----------------~~~~~~ 67 (720)
T 2zj8_A 5 ELRVDERIKSTLKE-RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMV----------------HRILTQ 67 (720)
T ss_dssp GCCSCHHHHHHHHH-TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHH----------------HHHHHH
T ss_pred hcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHH----------------HHHHhC
Confidence 46788888888877 8999999999999998 77899999999999999976543332 2222 4
Q ss_pred CCcEEEEccchh-------h---hhhcCeee----------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcce
Q psy4493 82 KKDAIIIMPTGK-------L---LKKKKICL----------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLAR 140 (323)
Q Consensus 82 ~~~~lv~~pTgs-------~---l~~~~i~l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~ 140 (323)
+..+++++|+.+ . +...|+.+ .......+|+|+||+++.. .++. .....++++
T Consensus 68 ~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~------~~~~~~~~l~~~~~ 141 (720)
T 2zj8_A 68 GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDS------LLRHGSSWIKDVKI 141 (720)
T ss_dssp CSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHH------HHHHTCTTGGGEEE
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccccCCCCEEEECHHHHHH------HHHcChhhhhcCCE
Confidence 778999999988 2 23345552 1112368999999999964 3333 233568999
Q ss_pred EEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEE----
Q psy4493 141 IAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVR---- 216 (323)
Q Consensus 141 vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~---- 216 (323)
|||||||++.+++ +...+..+ +....++.++++||||+++ .+++.++++. ..+..+..+..+...+.
T Consensus 142 vIiDE~H~l~~~~--r~~~~~~l--l~~l~~~~~ii~lSATl~n--~~~~~~~l~~---~~~~~~~rp~~l~~~~~~~~~ 212 (720)
T 2zj8_A 142 LVADEIHLIGSRD--RGATLEVI--LAHMLGKAQIIGLSATIGN--PEELAEWLNA---ELIVSDWRPVKLRRGVFYQGF 212 (720)
T ss_dssp EEEETGGGGGCTT--THHHHHHH--HHHHBTTBEEEEEECCCSC--HHHHHHHTTE---EEEECCCCSSEEEEEEEETTE
T ss_pred EEEECCcccCCCc--ccHHHHHH--HHHhhcCCeEEEEcCCcCC--HHHHHHHhCC---cccCCCCCCCcceEEEEeCCe
Confidence 9999999998744 33333332 1122237899999999987 4677888753 22222222211211111
Q ss_pred --ecCC---chhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhC------------------C----------
Q psy4493 217 --IKPA---AQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR------------------G---------- 263 (323)
Q Consensus 217 --~~~~---~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~------------------~---------- 263 (323)
.... ........+.+.+. +++++||||+|+++|+.++..|.+. +
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 289 (720)
T 2zj8_A 213 VTWEDGSIDRFSSWEELVYDAIR---KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKL 289 (720)
T ss_dssp EEETTSCEEECSSTTHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHH
T ss_pred eeccccchhhhhHHHHHHHHHHh---CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHH
Confidence 0010 01233445555554 5689999999999999999999753 1
Q ss_pred -----CeEEeecCCCCCCc------------------ceeeecccccCCccEEEE----cc----CCCCHhHHHHHhccC
Q psy4493 264 -----LRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIH----HC----LSKSMENFYQVSIAF 312 (323)
Q Consensus 264 -----~~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~----~~----~p~~~~~~~qr~GR~ 312 (323)
..+..+||+|+.++ |+++++|+|+|++++||+ || .|.+..+|+||+||+
T Consensus 290 ~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRa 369 (720)
T 2zj8_A 290 AKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRA 369 (720)
T ss_dssp HHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTB
T ss_pred HHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhc
Confidence 23899999999988 999999999999999998 66 589999999999999
Q ss_pred CCCC--CCCCCC
Q psy4493 313 GLGK--HSFRSR 322 (323)
Q Consensus 313 gR~g--~~g~~~ 322 (323)
||.| ..|.|+
T Consensus 370 GR~g~~~~G~~~ 381 (720)
T 2zj8_A 370 GRPKYDEVGEGI 381 (720)
T ss_dssp CCTTTCSEEEEE
T ss_pred CCCCCCCCceEE
Confidence 9998 456664
No 21
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=7.3e-36 Score=290.03 Aligned_cols=282 Identities=14% Similarity=0.177 Sum_probs=199.3
Q ss_pred cHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEE
Q psy4493 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAII 87 (323)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv 87 (323)
++.+.+.+++ +++..+++.|.++++.+..++++++.+|||+|||..+...+ +..+.++..+++
T Consensus 11 ~~~~~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~i----------------l~~~~~~~~~l~ 73 (702)
T 2p6r_A 11 SSYAVGILKE-EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAM----------------VREAIKGGKSLY 73 (702)
T ss_dssp HHHHHHHHHC-C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHH----------------HHHHHTTCCEEE
T ss_pred CHHHHHHHHh-CCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHH----------------HHHHHhCCcEEE
Confidence 3445555544 78999999999999999999999999999999997654444 233445788999
Q ss_pred Eccchh-------h---hhhcCeee----------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceEEEecc
Q psy4493 88 IMPTGK-------L---LKKKKICL----------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARIAIDEV 146 (323)
Q Consensus 88 ~~pTgs-------~---l~~~~i~l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~vVvDEa 146 (323)
++|+.+ . +...|+.+ .......+|+|+||+++.. .++. .....++++||+|||
T Consensus 74 i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~------~l~~~~~~l~~~~~vIiDE~ 147 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADS------LIRNRASWIKAVSCLVVDEI 147 (702)
T ss_dssp EESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHH------HHHTTCSGGGGCCEEEETTG
T ss_pred EeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchhhccCCCEEEECHHHHHH------HHHcChhHHhhcCEEEEeee
Confidence 999998 2 22334542 1123478999999999964 3333 233568999999999
Q ss_pred ccccccCCCchHHHHh-HHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEec------C
Q psy4493 147 HCCSSWGHDFRPDYQY-LSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIK------P 219 (323)
Q Consensus 147 h~~~~~~~~~r~~~~~-l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~ 219 (323)
|++.+++ ....+.. +..++...++.++++||||+++ .+++.++++. ..+..+..+.++...+... .
T Consensus 148 H~l~~~~--r~~~~~~ll~~l~~~~~~~~ii~lSATl~n--~~~~~~~l~~---~~~~~~~r~~~l~~~~~~~~~~~~~~ 220 (702)
T 2p6r_A 148 HLLDSEK--RGATLEILVTKMRRMNKALRVIGLSATAPN--VTEIAEWLDA---DYYVSDWRPVPLVEGVLCEGTLELFD 220 (702)
T ss_dssp GGGGCTT--THHHHHHHHHHHHHHCTTCEEEEEECCCTT--HHHHHHHTTC---EEEECCCCSSCEEEEEECSSEEEEEE
T ss_pred eecCCCC--cccHHHHHHHHHHhcCcCceEEEECCCcCC--HHHHHHHhCC---CcccCCCCCccceEEEeeCCeeeccC
Confidence 9998754 3333322 3345555568999999999997 4677888763 2233332222222111100 0
Q ss_pred C-----chhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhC------------------------------CC
Q psy4493 220 A-----AQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR------------------------------GL 264 (323)
Q Consensus 220 ~-----~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~------------------------------~~ 264 (323)
. ........+.+.+. +++++||||+++++|+.++..|.+. +.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 297 (702)
T 2p6r_A 221 GAFSTSRRVKFEELVEECVA---ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRK 297 (702)
T ss_dssp TTEEEEEECCHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred cchhhhhhhhHHHHHHHHHh---cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhc
Confidence 0 00114455555554 6789999999999999999998753 13
Q ss_pred eEEeecCCCCCCc------------------ceeeecccccCCccEEEE----cc---CCCCHhHHHHHhccCCCCC--C
Q psy4493 265 RVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIH----HC---LSKSMENFYQVSIAFGLGK--H 317 (323)
Q Consensus 265 ~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~----~~---~p~~~~~~~qr~GR~gR~g--~ 317 (323)
.+..+||+|+.++ |+++++|+|+|++++||+ || .|.+..+|+||+||+||.| .
T Consensus 298 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~ 377 (702)
T 2p6r_A 298 GAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDE 377 (702)
T ss_dssp TCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCS
T ss_pred CeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCC
Confidence 4788999999987 999999999999999999 66 7899999999999999998 4
Q ss_pred CCCCC
Q psy4493 318 SFRSR 322 (323)
Q Consensus 318 ~g~~~ 322 (323)
.|.|+
T Consensus 378 ~G~~~ 382 (702)
T 2p6r_A 378 RGEAI 382 (702)
T ss_dssp CEEEE
T ss_pred CceEE
Confidence 67664
No 22
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-35 Score=292.82 Aligned_cols=273 Identities=16% Similarity=0.136 Sum_probs=187.0
Q ss_pred CCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------
Q psy4493 21 LTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK------- 93 (323)
Q Consensus 21 ~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs------- 93 (323)
...+++.|.++++.+..++++++.+|||+|||......+ +..+..++.+++++||.+
T Consensus 182 ~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i----------------~~~l~~g~rvlvl~PtraLa~Q~~~ 245 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAI----------------AQSLKNKQRVIYTSPIKALSNQKYR 245 (1108)
T ss_dssp SSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHH----------------HHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHH----------------HHHHhcCCeEEEEcCcHHHHHHHHH
Confidence 346899999999999999999999999999997644443 333456788999999998
Q ss_pred hhhhc--Ceee----eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceEEEeccccccccCCCchHHHHhHHHH
Q psy4493 94 LLKKK--KICL----MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSIL 166 (323)
Q Consensus 94 ~l~~~--~i~l----~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l 166 (323)
.+... .+.+ ......++|+|+||++|.. .+.. .....++++|||||||++.+++ +...+..+ +
T Consensus 246 ~l~~~~~~VglltGd~~~~~~~~IlV~Tpe~L~~------~L~~~~~~l~~l~lVVIDEaH~l~d~~--rg~~~e~i--i 315 (1108)
T 3l9o_A 246 ELLAEFGDVGLMTGDITINPDAGCLVMTTEILRS------MLYRGSEVMREVAWVIFDEVHYMRDKE--RGVVWEET--I 315 (1108)
T ss_dssp HHHHHTSSEEEECSSCBCCCSCSEEEEEHHHHHH------HHHHCSSHHHHEEEEEEETGGGTTSHH--HHHHHHHH--H
T ss_pred HHHHHhCCccEEeCccccCCCCCEEEeChHHHHH------HHHcCccccccCCEEEEhhhhhccccc--hHHHHHHH--H
Confidence 22221 2222 3345678999999999974 2222 2334579999999999998864 44544443 3
Q ss_pred HhhCCCCCEEEEeecCChhHHHHHHHHhC---CCCcEEEecCCCCCCceeEEEecCCc----------------------
Q psy4493 167 KTMFPDVPILGLTATATTKVMLDVQKMLQ---IEDCVVIKAPFNRPNLFYEVRIKPAA---------------------- 221 (323)
Q Consensus 167 ~~~~~~~~~i~lSAT~~~~~~~~i~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 221 (323)
....++.++++||||+++.. ++..+++ .....++.....+.++...+......
T Consensus 316 ~~l~~~~qvl~lSATipn~~--e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~ 393 (1108)
T 3l9o_A 316 ILLPDKVRYVFLSATIPNAM--EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMA 393 (1108)
T ss_dssp HHSCTTSEEEEEECSCSSCH--HHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHT
T ss_pred HhcCCCceEEEEcCCCCCHH--HHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHH
Confidence 33445889999999988753 2233322 22333444333333332222111000
Q ss_pred -------------------------------hhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCe-----
Q psy4493 222 -------------------------------QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLR----- 265 (323)
Q Consensus 222 -------------------------------~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~----- 265 (323)
....+..++..+.. ....++||||+|++.|+.++..|...++.
T Consensus 394 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~-~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~ 472 (1108)
T 3l9o_A 394 SISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEK 472 (1108)
T ss_dssp TC-----------------------------CHHHHHHHHHHHHH-TTCCCEEEEESCHHHHHHHHHHTCSHHHHCC---
T ss_pred HHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh-cCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHH
Confidence 02233344444443 25679999999999999999998653221
Q ss_pred ----------------------------------EEeecCCCCCCc------------------ceeeecccccCCccEE
Q psy4493 266 ----------------------------------VSAYHAKLESNV------------------SIAFGLGIDKPNVRFV 293 (323)
Q Consensus 266 ----------------------------------v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~V 293 (323)
++.+||+|++.+ |+++++|+|+|++++|
T Consensus 473 ~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~V 552 (1108)
T 3l9o_A 473 EALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVV 552 (1108)
T ss_dssp -CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEE
T ss_pred HHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEE
Confidence 799999999987 9999999999999999
Q ss_pred EEccC--------CCCHhHHHHHhccCCCCC--CCCCCC
Q psy4493 294 IHHCL--------SKSMENFYQVSIAFGLGK--HSFRSR 322 (323)
Q Consensus 294 i~~~~--------p~~~~~~~qr~GR~gR~g--~~g~~~ 322 (323)
|+++. |.|..+|+||+||+||.| ..|.|+
T Consensus 553 I~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~i 591 (1108)
T 3l9o_A 553 FTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVI 591 (1108)
T ss_dssp ESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEE
T ss_pred EecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEE
Confidence 98776 347788999999999999 456554
No 23
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-34 Score=283.78 Aligned_cols=277 Identities=16% Similarity=0.137 Sum_probs=191.6
Q ss_pred HHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--
Q psy4493 16 KSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-- 93 (323)
Q Consensus 16 ~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-- 93 (323)
.+.++++ ++++|.++++.+..++++++.+|||+|||.....++. ..+..+..+++++||.+
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~----------------~~l~~g~rvL~l~PtkaLa 142 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIA----------------QSLKNKQRVIYTSPIKALS 142 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHH----------------HHHHTTCEEEEEESSHHHH
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHH----------------HHhccCCeEEEECChHHHH
Confidence 4555655 9999999999999999999999999999976443332 22346788999999988
Q ss_pred -----hhhhc--Ceee----eccCCCeeEEEEcccccccchhHHHHHH-HHHhhCCcceEEEeccccccccCCCchHHHH
Q psy4493 94 -----LLKKK--KICL----MTESSSLKLLYVSPEKLAKSKSFMTKLQ-KMYKAGCLARIAIDEVHCCSSWGHDFRPDYQ 161 (323)
Q Consensus 94 -----~l~~~--~i~l----~~~~~~~~vii~Tp~~l~~~~~~~~~l~-~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~ 161 (323)
.+... .+.+ .......+|+|+||++|.. .+. ......++++|||||||++.+++ +...+.
T Consensus 143 ~Q~~~~l~~~~~~vglltGd~~~~~~~~IvV~Tpe~L~~------~L~~~~~~l~~l~lVViDEaH~l~d~~--rg~~~e 214 (1010)
T 2xgj_A 143 NQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRS------MLYRGSEVMREVAWVIFDEVHYMRDKE--RGVVWE 214 (1010)
T ss_dssp HHHHHHHHHHHSCEEEECSSCEECTTCSEEEEEHHHHHH------HHHHTCTTGGGEEEEEEETGGGGGCTT--THHHHH
T ss_pred HHHHHHHHHHhCCEEEEeCCCccCCCCCEEEEcHHHHHH------HHHcCcchhhcCCEEEEechhhhcccc--hhHHHH
Confidence 22221 2222 2233467899999999863 222 23445689999999999998864 233332
Q ss_pred hHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhC---CCCcEEEecCCCCCCceeEEEecC-----------C-c-----
Q psy4493 162 YLSILKTMFPDVPILGLTATATTKVMLDVQKMLQ---IEDCVVIKAPFNRPNLFYEVRIKP-----------A-A----- 221 (323)
Q Consensus 162 ~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~----- 221 (323)
.+ +....++.++++||||+++.. ++..+++ ..+..++.....+.++...+.... . .
T Consensus 215 ~i--l~~l~~~~~il~LSATi~n~~--e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (1010)
T 2xgj_A 215 ET--IILLPDKVRYVFLSATIPNAM--EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENF 290 (1010)
T ss_dssp HH--HHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHH
T ss_pred HH--HHhcCCCCeEEEEcCCCCCHH--HHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHH
Confidence 22 333334889999999998743 3444443 223333333333322322222100 0 0
Q ss_pred ----------------------------h--------hHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCe
Q psy4493 222 ----------------------------Q--------KDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLR 265 (323)
Q Consensus 222 ----------------------------~--------~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~ 265 (323)
+ ...+..+...+.. ....++||||+|++.|+.+++.|...++.
T Consensus 291 ~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~-~~~~~~IVF~~sr~~~e~la~~L~~~~~~ 369 (1010)
T 2xgj_A 291 QKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEELALKMSKLDFN 369 (1010)
T ss_dssp HHHHHTCC------------------------------CHHHHHHHHHHH-HTCCSEEEEESSHHHHHHHHHTTTTSCCC
T ss_pred HHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHh-cCCCCEEEEECCHHHHHHHHHHHHhCCCC
Confidence 0 1123334444442 24569999999999999999999765432
Q ss_pred ---------------------------------------EEeecCCCCCCc------------------ceeeecccccC
Q psy4493 266 ---------------------------------------VSAYHAKLESNV------------------SIAFGLGIDKP 288 (323)
Q Consensus 266 ---------------------------------------v~~~h~~~~~~~------------------T~~~~~Gid~~ 288 (323)
++.+||+|++.+ |+++++|+|+|
T Consensus 370 ~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP 449 (1010)
T 2xgj_A 370 SDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMP 449 (1010)
T ss_dssp CHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCC
T ss_pred ChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCC
Confidence 789999999887 99999999999
Q ss_pred CccEEEE----ccC----CCCHhHHHHHhccCCCCCCC--CCCC
Q psy4493 289 NVRFVIH----HCL----SKSMENFYQVSIAFGLGKHS--FRSR 322 (323)
Q Consensus 289 ~v~~Vi~----~~~----p~~~~~~~qr~GR~gR~g~~--g~~~ 322 (323)
++++||+ ||. |.++.+|+||+||+||.|+. |.|+
T Consensus 450 ~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi 493 (1010)
T 2xgj_A 450 AKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVI 493 (1010)
T ss_dssp BSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEE
T ss_pred CceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEE
Confidence 9999999 998 88999999999999999974 7664
No 24
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.8e-34 Score=287.12 Aligned_cols=273 Identities=16% Similarity=0.181 Sum_probs=192.1
Q ss_pred HHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--
Q psy4493 16 KSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-- 93 (323)
Q Consensus 16 ~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-- 93 (323)
+..+++ .+++.|.++++.+..++++++.+|||+|||......+. ..+..+..+++++||.+
T Consensus 33 ~~~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~----------------~~~~~g~~vlvl~PtraLa 95 (997)
T 4a4z_A 33 ARSWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIA----------------MAHRNMTKTIYTSPIKALS 95 (997)
T ss_dssp SCCCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHH----------------HHHHTTCEEEEEESCGGGH
T ss_pred HHhCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHH----------------HHHhcCCeEEEEeCCHHHH
Confidence 344444 47999999999999999999999999999965333322 12345677999999999
Q ss_pred -----hhhhc--Cee--e----eccCCCeeEEEEcccccccchhHHHHH-HHHHhhCCcceEEEeccccccccCCCchHH
Q psy4493 94 -----LLKKK--KIC--L----MTESSSLKLLYVSPEKLAKSKSFMTKL-QKMYKAGCLARIAIDEVHCCSSWGHDFRPD 159 (323)
Q Consensus 94 -----~l~~~--~i~--l----~~~~~~~~vii~Tp~~l~~~~~~~~~l-~~~~~~~~v~~vVvDEah~~~~~~~~~r~~ 159 (323)
.+.+. ++. + .......+|+|+||++|.. .+ .......++++|||||||++.+|+ +...
T Consensus 96 ~Q~~~~l~~~~~~~~v~~l~G~~~~~~~~~IlV~Tpe~L~~------~l~~~~~~l~~l~lvViDEaH~l~d~~--~g~~ 167 (997)
T 4a4z_A 96 NQKFRDFKETFDDVNIGLITGDVQINPDANCLIMTTEILRS------MLYRGADLIRDVEFVIFDEVHYVNDQD--RGVV 167 (997)
T ss_dssp HHHHHHHHTTC--CCEEEECSSCEECTTSSEEEEEHHHHHH------HHHHTCSGGGGEEEEEECCTTCCCTTC--TTCC
T ss_pred HHHHHHHHHHcCCCeEEEEeCCCccCCCCCEEEECHHHHHH------HHHhCchhhcCCCEEEEECcccccccc--hHHH
Confidence 33332 233 1 2334568999999999964 22 223345689999999999999876 3333
Q ss_pred HHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCC---CCcEEEecCCCCCCceeEEEecC-----------------
Q psy4493 160 YQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQI---EDCVVIKAPFNRPNLFYEVRIKP----------------- 219 (323)
Q Consensus 160 ~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~----------------- 219 (323)
+..+ +....++.++++||||+++.. ++.++++. .+..++.....+.++...+....
T Consensus 168 ~e~i--i~~l~~~v~iIlLSAT~~n~~--ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~ 243 (997)
T 4a4z_A 168 WEEV--IIMLPQHVKFILLSATVPNTY--EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANF 243 (997)
T ss_dssp HHHH--HHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHH
T ss_pred HHHH--HHhcccCCCEEEEcCCCCChH--HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHH
Confidence 4333 444445899999999998743 55666543 33334444433333332221100
Q ss_pred --------------------------------------------------------------------------CchhHH
Q psy4493 220 --------------------------------------------------------------------------AAQKDC 225 (323)
Q Consensus 220 --------------------------------------------------------------------------~~~~~~ 225 (323)
......
T Consensus 244 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (997)
T 4a4z_A 244 RKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKT 323 (997)
T ss_dssp HHHHHHHC-----------------------------------------------------------------CCCCTTH
T ss_pred HHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhH
Confidence 011234
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCC---------------------------------------eE
Q psy4493 226 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGL---------------------------------------RV 266 (323)
Q Consensus 226 ~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~---------------------------------------~v 266 (323)
+..+.+.+... ...++||||+|++.|+.++..|.+.++ .+
T Consensus 324 ~~~li~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi 402 (997)
T 4a4z_A 324 WPEIVNYLRKR-ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGI 402 (997)
T ss_dssp HHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCe
Confidence 55677777643 567999999999999999999977555 47
Q ss_pred EeecCCCCCCc------------------ceeeecccccCCccEEEEccCCC---------CHhHHHHHhccCCCCCCCC
Q psy4493 267 SAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSK---------SMENFYQVSIAFGLGKHSF 319 (323)
Q Consensus 267 ~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~p~---------~~~~~~qr~GR~gR~g~~g 319 (323)
..+||+|++.+ |+++++|+|+|+ ..||+++.|+ |..+|+||+|||||.|.++
T Consensus 403 ~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~ 481 (997)
T 4a4z_A 403 AVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDS 481 (997)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCS
T ss_pred eeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCc
Confidence 99999999877 999999999999 6666666665 9999999999999999443
No 25
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=8.5e-34 Score=275.75 Aligned_cols=279 Identities=15% Similarity=0.128 Sum_probs=166.8
Q ss_pred HhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhc-----CCcEEEEccc
Q psy4493 17 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL-----KKDAIIIMPT 91 (323)
Q Consensus 17 ~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~-----~~~~lv~~pT 91 (323)
+.+++..+|++|.++++.++.++++++.+|||+|||......+.. .+.. +..+++++||
T Consensus 7 ~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~----------------~l~~~~~~~~~~~lvl~Pt 70 (696)
T 2ykg_A 7 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH----------------HLKKFPQGQKGKVVFFANQ 70 (696)
T ss_dssp CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH----------------HHHHSCTTCCCCEEEECSS
T ss_pred cccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHH----------------HHHhCccCCCCeEEEEECC
Confidence 457889999999999999999999999999999999765544432 1222 2569999999
Q ss_pred hh-------hhhhc----Ceee---e----------ccCCCeeEEEEcccccccchhHHHHHHHH-H-hhCCcceEEEec
Q psy4493 92 GK-------LLKKK----KICL---M----------TESSSLKLLYVSPEKLAKSKSFMTKLQKM-Y-KAGCLARIAIDE 145 (323)
Q Consensus 92 gs-------~l~~~----~i~l---~----------~~~~~~~vii~Tp~~l~~~~~~~~~l~~~-~-~~~~v~~vVvDE 145 (323)
.+ .+.+. ++.+ . .....++|+|+||++|.+ .+... . ...++++|||||
T Consensus 71 ~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~------~l~~~~~~~l~~~~~vViDE 144 (696)
T 2ykg_A 71 IPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN------NLKKGTIPSLSIFTLMIFDE 144 (696)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHH------HHHTTSSCCGGGCSEEEEET
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHH------HHhcCcccccccccEEEEeC
Confidence 87 22222 4442 0 011357999999999974 33331 2 356789999999
Q ss_pred cccccccCCCchHHHHhHHHHHhh-----CCCCCEEEEeecCC-------hhHHHHHHHHhCCCCcEEEecC--------
Q psy4493 146 VHCCSSWGHDFRPDYQYLSILKTM-----FPDVPILGLTATAT-------TKVMLDVQKMLQIEDCVVIKAP-------- 205 (323)
Q Consensus 146 ah~~~~~~~~~r~~~~~l~~l~~~-----~~~~~~i~lSAT~~-------~~~~~~i~~~l~~~~~~~~~~~-------- 205 (323)
||++..+. .++..... .+... .+..++++||||+. .+..+.+.+.+...+...+...
T Consensus 145 aH~~~~~~-~~~~i~~~--~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~ 221 (696)
T 2ykg_A 145 CHNTSKQH-PYNMIMFN--YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELE 221 (696)
T ss_dssp GGGCSTTC-HHHHHHHH--HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHH
T ss_pred CCcccCcc-cHHHHHHH--HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHH
Confidence 99998642 23322211 12221 24689999999998 3334444443321111111100
Q ss_pred -------------CCCCCceeE----------------------------------------------------EEe---
Q psy4493 206 -------------FNRPNLFYE----------------------------------------------------VRI--- 217 (323)
Q Consensus 206 -------------~~~~~~~~~----------------------------------------------------~~~--- 217 (323)
..+....+. ...
T Consensus 222 ~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (696)
T 2ykg_A 222 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE 301 (696)
T ss_dssp HHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CC
T ss_pred hhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchh
Confidence 000000000 000
Q ss_pred ------------------------------------------------------------------------cCCchhHH
Q psy4493 218 ------------------------------------------------------------------------KPAAQKDC 225 (323)
Q Consensus 218 ------------------------------------------------------------------------~~~~~~~~ 225 (323)
.......+
T Consensus 302 ~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k 381 (696)
T 2ykg_A 302 ESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPK 381 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHH
T ss_pred hhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Confidence 00012345
Q ss_pred HHHHHHHHHhh---cCCCcEEEEeCChhHHHHHHHHHHhCC----CeEEee--------cCCCCCCc-------------
Q psy4493 226 LDELADLMSRR---FRNQSGIIYTTSIKECEDLREELRNRG----LRVSAY--------HAKLESNV------------- 277 (323)
Q Consensus 226 ~~~l~~~l~~~---~~~~~~iVF~~s~~~~~~l~~~L~~~~----~~v~~~--------h~~~~~~~------------- 277 (323)
+..|.+++... .++.++||||+++..|+.+++.|.+.| +++..+ ||+|++++
T Consensus 382 ~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~ 461 (696)
T 2ykg_A 382 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 461 (696)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------C
T ss_pred HHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCC
Confidence 66677777644 256899999999999999999999988 888888 45888766
Q ss_pred ------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 ------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 ------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++++|+|+|+|++||+||+|.+..+|+||+|| ||. +.|.|+
T Consensus 462 ~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~ 510 (696)
T 2ykg_A 462 HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCF 510 (696)
T ss_dssp CSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEE
T ss_pred ccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEE
Confidence 9999999999999999999999999999999999 998 677664
No 26
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.5e-33 Score=265.51 Aligned_cols=275 Identities=15% Similarity=0.154 Sum_probs=152.4
Q ss_pred CCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhc-----CCcEEEEccchh--
Q psy4493 21 LTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL-----KKDAIIIMPTGK-- 93 (323)
Q Consensus 21 ~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~-----~~~~lv~~pTgs-- 93 (323)
...+||+|.++++.++.++++++.+|||+|||......+.. .+.. +..+++++||.+
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~----------------~~~~~~~~~~~~~lil~P~~~L~ 68 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEH----------------HFQNMPAGRKAKVVFLATKVPVY 68 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH----------------HHHTCCSSCCCCEEEECSSHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHH----------------HHHhCcccCCCeEEEEeCCHHHH
Confidence 45789999999999999999999999999999765544432 1222 567999999988
Q ss_pred -----hhhh----cCeee------e-------ccCCCeeEEEEcccccccchhHHHHHHH-HH-hhCCcceEEEeccccc
Q psy4493 94 -----LLKK----KKICL------M-------TESSSLKLLYVSPEKLAKSKSFMTKLQK-MY-KAGCLARIAIDEVHCC 149 (323)
Q Consensus 94 -----~l~~----~~i~l------~-------~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~-~~~~v~~vVvDEah~~ 149 (323)
.+.. .++.+ . .....++|+|+||+++.. .+.. .. ...+++++||||||++
T Consensus 69 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~------~~~~~~~~~~~~~~~vViDEah~~ 142 (556)
T 4a2p_A 69 EQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVN------SFEDGTLTSLSIFTLMIFDECHNT 142 (556)
T ss_dssp HHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHH------HHHSSSCCCSTTCSEEEEETGGGC
T ss_pred HHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHH------HHHhCcccccccCCEEEEECCccc
Confidence 2222 24442 0 111347899999999874 3433 12 4568999999999999
Q ss_pred cccCCCchHHHHhHHHHHhh----CCCCCEEEEeecCChhH----------HHHHHHHhCCCCcEEEe-------cCCCC
Q psy4493 150 SSWGHDFRPDYQYLSILKTM----FPDVPILGLTATATTKV----------MLDVQKMLQIEDCVVIK-------APFNR 208 (323)
Q Consensus 150 ~~~~~~~r~~~~~l~~l~~~----~~~~~~i~lSAT~~~~~----------~~~i~~~l~~~~~~~~~-------~~~~~ 208 (323)
.+++. +..... ..+... .+..++++||||++... ...+...++........ ....+
T Consensus 143 ~~~~~-~~~~~~--~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 219 (556)
T 4a2p_A 143 TGNHP-YNVLMT--RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNK 219 (556)
T ss_dssp STTSH-HHHHHH--HHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCC
T ss_pred CCcch-HHHHHH--HHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCC
Confidence 87651 222211 112221 24688999999996421 11222333321100000 00111
Q ss_pred CCceeEEEec----------------------------------------------------------------------
Q psy4493 209 PNLFYEVRIK---------------------------------------------------------------------- 218 (323)
Q Consensus 209 ~~~~~~~~~~---------------------------------------------------------------------- 218 (323)
+...+.....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (556)
T 4a2p_A 220 PEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICR 299 (556)
T ss_dssp CCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHH
T ss_pred CceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 1111111100
Q ss_pred -------------------------------------------------------------------CCchhHHHHHHHH
Q psy4493 219 -------------------------------------------------------------------PAAQKDCLDELAD 231 (323)
Q Consensus 219 -------------------------------------------------------------------~~~~~~~~~~l~~ 231 (323)
......|+..|.+
T Consensus 300 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~ 379 (556)
T 4a2p_A 300 ALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVC 379 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHH
Confidence 0001235555666
Q ss_pred HHHhh---cCCCcEEEEeCChhHHHHHHHHHHhC------------CCeEEeecCCCCCCc-------------------
Q psy4493 232 LMSRR---FRNQSGIIYTTSIKECEDLREELRNR------------GLRVSAYHAKLESNV------------------- 277 (323)
Q Consensus 232 ~l~~~---~~~~~~iVF~~s~~~~~~l~~~L~~~------------~~~v~~~h~~~~~~~------------------- 277 (323)
++.+. .++.++||||+++..++.+++.|.+. |.....+||++++++
T Consensus 380 ~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLva 459 (556)
T 4a2p_A 380 ILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIA 459 (556)
T ss_dssp HHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEE
T ss_pred HHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEE
Confidence 66533 46789999999999999999999876 445556677888877
Q ss_pred ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++++|+|+|+|++||+||+|+|+..|+||+|| ||. +.|.++
T Consensus 460 T~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~ 502 (556)
T 4a2p_A 460 TSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCI 502 (556)
T ss_dssp EC-----------CEEEEETCCSCHHHHHHC----------CCEE
T ss_pred cCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEE
Confidence 9999999999999999999999999999999999 998 778765
No 27
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=5.5e-34 Score=285.82 Aligned_cols=255 Identities=17% Similarity=0.145 Sum_probs=176.5
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEcc
Q psy4493 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMP 90 (323)
Q Consensus 11 ~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~p 90 (323)
..+.+++.+++ .+++.|.++++.++.++++++.+|||+|||......+. ..+..+..+++++|
T Consensus 67 ~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il----------------~~~~~~~~~Lil~P 129 (1104)
T 4ddu_A 67 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTAL----------------WLARKGKKSALVFP 129 (1104)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHH----------------HHHTTTCCEEEEES
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHH----------------HHHhcCCeEEEEec
Confidence 45567777777 58999999999999999999999999999975333322 22346788999999
Q ss_pred chh-------hhhh---cCeee---e--------------ccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEE
Q psy4493 91 TGK-------LLKK---KKICL---M--------------TESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAI 143 (323)
Q Consensus 91 Tgs-------~l~~---~~i~l---~--------------~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVv 143 (323)
|.+ .+.. .++.+ . ...+.++|+|+||++|.+ .+.. ....++++|||
T Consensus 130 treLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~------~l~~-l~~~~l~~lVi 202 (1104)
T 4ddu_A 130 TVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSK------NREK-LSQKRFDFVFV 202 (1104)
T ss_dssp SHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHH------SHHH-HHTSCCSEEEE
T ss_pred hHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHH------HHHh-hcccCcCEEEE
Confidence 999 3444 23331 0 112358999999999974 2222 44569999999
Q ss_pred eccccccccC---------CCchHH-HHhHHHHHh-------hC--CCCCEEEEeecC-ChhHHHHH-HHHhCCCCcEEE
Q psy4493 144 DEVHCCSSWG---------HDFRPD-YQYLSILKT-------MF--PDVPILGLTATA-TTKVMLDV-QKMLQIEDCVVI 202 (323)
Q Consensus 144 DEah~~~~~~---------~~~r~~-~~~l~~l~~-------~~--~~~~~i~lSAT~-~~~~~~~i-~~~l~~~~~~~~ 202 (323)
||||++..++ .+|... +..+..... .. ++.|+++||||+ +......+ ...+++. +.
T Consensus 203 DEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~---v~ 279 (1104)
T 4ddu_A 203 DDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFT---VG 279 (1104)
T ss_dssp SCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCC---CC
T ss_pred eCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEE---ec
Confidence 9999877533 236655 333322111 00 477999999995 44433222 3333321 11
Q ss_pred ecCCCCCCceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEE-eecCCCCCCc----
Q psy4493 203 KAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVS-AYHAKLESNV---- 277 (323)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~-~~h~~~~~~~---- 277 (323)
......+++...+... ++...+.+++.. .++++||||++++.|+.+++.|...|+.+. .+||.-.. .
T Consensus 280 ~~~~~~~~i~~~~~~~-----~k~~~L~~ll~~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~rr~-l~~F~ 351 (1104)
T 4ddu_A 280 RLVSVARNITHVRISS-----RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKN-FEDFK 351 (1104)
T ss_dssp BCCCCCCCEEEEEESC-----CCHHHHHHHHHH--HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSHHHH-HHHHH
T ss_pred cCCCCcCCceeEEEec-----CHHHHHHHHHHh--cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCcHHH-HHHHH
Confidence 1223344454444333 245566777765 358999999999999999999999999998 99994221 2
Q ss_pred -------------ceeeecccccCC-ccEEEEccCCC
Q psy4493 278 -------------SIAFGLGIDKPN-VRFVIHHCLSK 300 (323)
Q Consensus 278 -------------T~~~~~Gid~~~-v~~Vi~~~~p~ 300 (323)
|+++++|+|+|+ |++||+||+|.
T Consensus 352 ~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 352 VGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 589999999999 99999999998
No 28
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.4e-32 Score=251.06 Aligned_cols=273 Identities=15% Similarity=0.152 Sum_probs=188.7
Q ss_pred CCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------hh
Q psy4493 23 DFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------LL 95 (323)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------~l 95 (323)
.+|++|.++++.++.+ ++++.+|||+|||..+...+... +. ..+..+++++||.+ .+
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~-------------~~--~~~~~~liv~P~~~L~~q~~~~~ 72 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYR-------------LT--KYGGKVLMLAPTKPLVLQHAESF 72 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHH-------------HH--HSCSCEEEECSSHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHH-------------Hh--cCCCeEEEEECCHHHHHHHHHHH
Confidence 6899999999999988 99999999999997766665431 00 25678999999987 23
Q ss_pred hhc-Ce---e--ee----------ccCCCeeEEEEcccccccchhHHHHHH-HHHhhCCcceEEEeccccccccCCCchH
Q psy4493 96 KKK-KI---C--LM----------TESSSLKLLYVSPEKLAKSKSFMTKLQ-KMYKAGCLARIAIDEVHCCSSWGHDFRP 158 (323)
Q Consensus 96 ~~~-~i---~--l~----------~~~~~~~vii~Tp~~l~~~~~~~~~l~-~~~~~~~v~~vVvDEah~~~~~~~~~r~ 158 (323)
.+. +. . .. .....++|+|+||+++.. .+. ......++++||+||||++.... .+..
T Consensus 73 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~------~~~~~~~~~~~~~~vIiDEaH~~~~~~-~~~~ 145 (494)
T 1wp9_A 73 RRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIEN------DLLAGRISLEDVSLIVFDEAHRAVGNY-AYVF 145 (494)
T ss_dssp HHHBCSCGGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHH------HHHTTSCCTTSCSEEEEETGGGCSTTC-HHHH
T ss_pred HHHhCcchhheEEeeCCcchhhhhhhccCCCEEEecHHHHHH------HHhcCCcchhhceEEEEECCcccCCCC-cHHH
Confidence 322 32 2 10 111256899999999974 222 23345689999999999987532 1222
Q ss_pred HHHhHHHHHhhCCCCCEEEEeecCChh--HHHHHHHHhCCCCcEEEecCC-------CCCCceeEEEecC----------
Q psy4493 159 DYQYLSILKTMFPDVPILGLTATATTK--VMLDVQKMLQIEDCVVIKAPF-------NRPNLFYEVRIKP---------- 219 (323)
Q Consensus 159 ~~~~l~~l~~~~~~~~~i~lSAT~~~~--~~~~i~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~---------- 219 (323)
.+..+....+..++++||||+.+. ....+...++...+....... ......+.....+
T Consensus 146 ---~~~~~~~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (494)
T 1wp9_A 146 ---IAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLL 222 (494)
T ss_dssp ---HHHHHHHHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHH
T ss_pred ---HHHHHHhcCCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHH
Confidence 123344455688999999999843 234455565544322211100 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy4493 220 -------------------------------------------------------------------------------- 219 (323)
Q Consensus 220 -------------------------------------------------------------------------------- 219 (323)
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (494)
T 1wp9_A 223 REMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIK 302 (494)
T ss_dssp HHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Confidence
Q ss_pred ------------------------------------CchhHHHHHHHHHHHhh---cCCCcEEEEeCChhHHHHHHHHHH
Q psy4493 220 ------------------------------------AAQKDCLDELADLMSRR---FRNQSGIIYTTSIKECEDLREELR 260 (323)
Q Consensus 220 ------------------------------------~~~~~~~~~l~~~l~~~---~~~~~~iVF~~s~~~~~~l~~~L~ 260 (323)
.....++..+.+++... ..+.++||||++++.++.+++.|.
T Consensus 303 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~ 382 (494)
T 1wp9_A 303 KLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELV 382 (494)
T ss_dssp HHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHH
T ss_pred HHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHH
Confidence 01123455566666543 368899999999999999999999
Q ss_pred hCCCeEEeecC--------CCCCCc------------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCC
Q psy4493 261 NRGLRVSAYHA--------KLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL 314 (323)
Q Consensus 261 ~~~~~v~~~h~--------~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR 314 (323)
+.|+.+..+|| +++..+ |+++++|+|+|++++||++|+|+++..|+||+||+||
T Consensus 383 ~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R 462 (494)
T 1wp9_A 383 KDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGR 462 (494)
T ss_dssp HTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCS
T ss_pred HcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccC
Confidence 99999999999 888877 9999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy4493 315 GKHSFRSR 322 (323)
Q Consensus 315 ~g~~g~~~ 322 (323)
.|+ |+++
T Consensus 463 ~g~-g~~~ 469 (494)
T 1wp9_A 463 HMP-GRVI 469 (494)
T ss_dssp CCC-SEEE
T ss_pred CCC-ceEE
Confidence 998 7654
No 29
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.6e-33 Score=268.71 Aligned_cols=275 Identities=14% Similarity=0.125 Sum_probs=192.5
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcC------CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHH
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK------KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINI 78 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~------~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~ 78 (323)
++...+..+.+.+.+++ .+++.|.++++.+..+ .+.++.+|||+|||......+. ..
T Consensus 351 ~~~~~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il----------------~~ 413 (780)
T 1gm5_A 351 KKIEGKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAIL----------------DN 413 (780)
T ss_dssp CCCCTHHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHH----------------HH
T ss_pred CCCchHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHH----------------HH
Confidence 44455567777788888 8999999999988764 5899999999999977554443 23
Q ss_pred HhcCCcEEEEccchh-----------hhhhcCeee-----------------eccCCCeeEEEEcccccccchhHHHHHH
Q psy4493 79 ALLKKDAIIIMPTGK-----------LLKKKKICL-----------------MTESSSLKLLYVSPEKLAKSKSFMTKLQ 130 (323)
Q Consensus 79 ~~~~~~~lv~~pTgs-----------~l~~~~i~l-----------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~ 130 (323)
+..|..+++++||.. .+...++.+ ....+.++|+|+||+.+.+
T Consensus 414 l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~--------- 484 (780)
T 1gm5_A 414 YEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE--------- 484 (780)
T ss_dssp HHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH---------
T ss_pred HHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh---------
Confidence 346788999999988 222234442 1123568999999987642
Q ss_pred HHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEec-CCCCC
Q psy4493 131 KMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKA-PFNRP 209 (323)
Q Consensus 131 ~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~ 209 (323)
.....+++++||||+|++... .+. .++....+.++++||||+.++... ...++..+...+.. +..+.
T Consensus 485 -~~~~~~l~lVVIDEaHr~g~~---qr~------~l~~~~~~~~vL~mSATp~p~tl~--~~~~g~~~~s~i~~~p~~r~ 552 (780)
T 1gm5_A 485 -DVHFKNLGLVIIDEQHRFGVK---QRE------ALMNKGKMVDTLVMSATPIPRSMA--LAFYGDLDVTVIDEMPPGRK 552 (780)
T ss_dssp -CCCCSCCCEEEEESCCCC--------C------CCCSSSSCCCEEEEESSCCCHHHH--HHHTCCSSCEEECCCCSSCC
T ss_pred -hhhccCCceEEecccchhhHH---HHH------HHHHhCCCCCEEEEeCCCCHHHHH--HHHhCCcceeeeeccCCCCc
Confidence 123468999999999987431 111 122223478999999999876533 33444444444433 33334
Q ss_pred CceeEEEecCCchhHHHHHHHHHHHhh-cCCCcEEEEeCCh--------hHHHHHHHHHHh---CCCeEEeecCCCCCCc
Q psy4493 210 NLFYEVRIKPAAQKDCLDELADLMSRR-FRNQSGIIYTTSI--------KECEDLREELRN---RGLRVSAYHAKLESNV 277 (323)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~iVF~~s~--------~~~~~l~~~L~~---~~~~v~~~h~~~~~~~ 277 (323)
++...+.. .. ....+.+.+.+. ..+.+++|||+++ ..++.+++.|.+ .++.+..+||+|++++
T Consensus 553 ~i~~~~~~--~~---~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~e 627 (780)
T 1gm5_A 553 EVQTMLVP--MD---RVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEE 627 (780)
T ss_dssp CCEECCCC--SS---THHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSC
T ss_pred ceEEEEec--cc---hHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHH
Confidence 44322221 11 233444444422 2678999999976 457888888987 4788999999999888
Q ss_pred ------------------ceeeecccccCCccEEEEccCCC-CHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 ------------------SIAFGLGIDKPNVRFVIHHCLSK-SMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 ------------------T~~~~~Gid~~~v~~Vi~~~~p~-~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++++|+|+|++++||++|.|. +...|.||+||+||.|++|.|+
T Consensus 628 R~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~i 691 (780)
T 1gm5_A 628 KDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCF 691 (780)
T ss_dssp SHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEE
T ss_pred HHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEE
Confidence 99999999999999999999986 6889999999999999999986
No 30
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=281.49 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=71.5
Q ss_pred CCcEEEEeCChhHHHHHHHHHHhC------CCeEEeecCC--------CCCCc------------------ceeeecccc
Q psy4493 239 NQSGIIYTTSIKECEDLREELRNR------GLRVSAYHAK--------LESNV------------------SIAFGLGID 286 (323)
Q Consensus 239 ~~~~iVF~~s~~~~~~l~~~L~~~------~~~v~~~h~~--------~~~~~------------------T~~~~~Gid 286 (323)
+.++||||++++.++.+++.|.+. |+++..+||+ |++.+ |+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 789999999999999999999987 8999999999 88887 999999999
Q ss_pred cCCccEEEEccCCCCHhHHHHHhccCCCCC
Q psy4493 287 KPNVRFVIHHCLSKSMENFYQVSIAFGLGK 316 (323)
Q Consensus 287 ~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g 316 (323)
+|+|++||+||+|+|+..|+||+||+||.|
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 999999999999999999999999987766
No 31
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=9.9e-33 Score=261.18 Aligned_cols=274 Identities=14% Similarity=0.113 Sum_probs=174.3
Q ss_pred CCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhc-----CCcEEEEccchh---
Q psy4493 22 TDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL-----KKDAIIIMPTGK--- 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~-----~~~~lv~~pTgs--- 93 (323)
-.++++|.++++.++.++++++.+|||+|||......+.. .+.. +..+++++||.+
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~----------------~~~~~~~~~~~~~lil~P~~~L~~ 66 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEH----------------HLKKFPCGQKGKVVFFANQIPVYE 66 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH----------------HHHTCCSSCCCCEEEECSSHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHH----------------HHHhcccCCCCEEEEEeCCHHHHH
Confidence 4689999999999999999999999999999765444432 2222 567999999988
Q ss_pred ----hhhh----cCeee------e-------ccCCCeeEEEEcccccccchhHHHHHHHH-H-hhCCcceEEEecccccc
Q psy4493 94 ----LLKK----KKICL------M-------TESSSLKLLYVSPEKLAKSKSFMTKLQKM-Y-KAGCLARIAIDEVHCCS 150 (323)
Q Consensus 94 ----~l~~----~~i~l------~-------~~~~~~~vii~Tp~~l~~~~~~~~~l~~~-~-~~~~v~~vVvDEah~~~ 150 (323)
.+.. .++.+ . .....++|+|+||+++.. .+... . ...+++++||||||++.
T Consensus 67 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~------~~~~~~~~~~~~~~~vViDEah~~~ 140 (555)
T 3tbk_A 67 QQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVN------NLNNGAIPSLSVFTLMIFDECHNTS 140 (555)
T ss_dssp HHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHH------HHHTSSSCCGGGCSEEEETTGGGCS
T ss_pred HHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHH------HHhcCcccccccCCEEEEECccccC
Confidence 2222 24442 0 111247999999999974 33331 2 35678999999999998
Q ss_pred ccCCCchHHHHhHHHHHhhC-----CCCCEEEEeecCChhH-------HH---HHHHHhCCCCcEEEe-------cCCCC
Q psy4493 151 SWGHDFRPDYQYLSILKTMF-----PDVPILGLTATATTKV-------ML---DVQKMLQIEDCVVIK-------APFNR 208 (323)
Q Consensus 151 ~~~~~~r~~~~~l~~l~~~~-----~~~~~i~lSAT~~~~~-------~~---~i~~~l~~~~~~~~~-------~~~~~ 208 (323)
..+ .++.... ..+.... +..++++||||+.... .+ .+...++........ ....+
T Consensus 141 ~~~-~~~~~~~--~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~ 217 (555)
T 3tbk_A 141 KNH-PYNQIMF--RYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYK 217 (555)
T ss_dssp TTC-HHHHHHH--HHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCC
T ss_pred Ccc-hHHHHHH--HHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCC
Confidence 754 2332221 1222221 4578999999996531 12 233333321111000 01112
Q ss_pred CCceeEEEecCC--------------------------------------------------------------------
Q psy4493 209 PNLFYEVRIKPA-------------------------------------------------------------------- 220 (323)
Q Consensus 209 ~~~~~~~~~~~~-------------------------------------------------------------------- 220 (323)
+...+.......
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (555)
T 3tbk_A 218 PQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVC 297 (555)
T ss_dssp CCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHH
T ss_pred CceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHH
Confidence 222211111000
Q ss_pred ----------------------------------------------------------------------chhHHHHHHH
Q psy4493 221 ----------------------------------------------------------------------AQKDCLDELA 230 (323)
Q Consensus 221 ----------------------------------------------------------------------~~~~~~~~l~ 230 (323)
....++..+.
T Consensus 298 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 377 (555)
T 3tbk_A 298 KALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLY 377 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHH
Confidence 0123455555
Q ss_pred HHHHhh---cCCCcEEEEeCChhHHHHHHHHHHhCC----CeE--------EeecCCCCCCc------------------
Q psy4493 231 DLMSRR---FRNQSGIIYTTSIKECEDLREELRNRG----LRV--------SAYHAKLESNV------------------ 277 (323)
Q Consensus 231 ~~l~~~---~~~~~~iVF~~s~~~~~~l~~~L~~~~----~~v--------~~~h~~~~~~~------------------ 277 (323)
+++... .++.++||||+++..++.+++.|.+.+ +.+ ..+||+|++++
T Consensus 378 ~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLv 457 (555)
T 3tbk_A 378 LVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILI 457 (555)
T ss_dssp HHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEE
T ss_pred HHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEE
Confidence 555532 356899999999999999999999864 344 44455888777
Q ss_pred -ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 -SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 -T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++++|+|+|+|++||+||+|+|+..|+||+|| ||. +.|.++
T Consensus 458 aT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~ 501 (555)
T 3tbk_A 458 ATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCF 501 (555)
T ss_dssp ECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEE
T ss_pred EcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEE
Confidence 9999999999999999999999999999999999 998 778764
No 32
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=6.1e-32 Score=265.74 Aligned_cols=279 Identities=14% Similarity=0.156 Sum_probs=157.8
Q ss_pred HhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhc-----CCcEEEEccc
Q psy4493 17 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL-----KKDAIIIMPT 91 (323)
Q Consensus 17 ~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~-----~~~~lv~~pT 91 (323)
..+++..+|++|.++++.++.++++++.+|||+|||......+.. .+.+ +..++|++||
T Consensus 242 ~~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~----------------~l~~~~~~~~~~~Lvl~Pt 305 (797)
T 4a2q_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEH----------------HFQNMPAGRKAKVVFLATK 305 (797)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH----------------HHHTCCSSCCCCEEEECSS
T ss_pred hhcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHH----------------HHHhccccCCCeEEEEeCC
Confidence 355688999999999999999999999999999999765544432 2222 5679999999
Q ss_pred hh-------hhhhc----Ceee-------------eccCCCeeEEEEcccccccchhHHHHHHH-HH-hhCCcceEEEec
Q psy4493 92 GK-------LLKKK----KICL-------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MY-KAGCLARIAIDE 145 (323)
Q Consensus 92 gs-------~l~~~----~i~l-------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~-~~~~v~~vVvDE 145 (323)
.+ .+... ++.+ ......++|+|+||+++.+ .+.. .. ...++++|||||
T Consensus 306 ~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~------~l~~~~~~~~~~~~~iViDE 379 (797)
T 4a2q_A 306 VPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVN------SFEDGTLTSLSIFTLMIFDE 379 (797)
T ss_dssp HHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHH------HHHSSSCCCGGGCSEEEETT
T ss_pred HHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHH------HHHhccccccccCCEEEEEC
Confidence 98 22222 4442 0112367999999999874 3333 12 345789999999
Q ss_pred cccccccCCCchHHHHhHHHHHhh----CCCCCEEEEeecCChh----------HHHHHHHHhCCCCcEEEe-------c
Q psy4493 146 VHCCSSWGHDFRPDYQYLSILKTM----FPDVPILGLTATATTK----------VMLDVQKMLQIEDCVVIK-------A 204 (323)
Q Consensus 146 ah~~~~~~~~~r~~~~~l~~l~~~----~~~~~~i~lSAT~~~~----------~~~~i~~~l~~~~~~~~~-------~ 204 (323)
||++...+ .+......+ +... .+..++++||||+... ....+...++........ .
T Consensus 380 aH~~~~~~-~~~~i~~~~--~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~ 456 (797)
T 4a2q_A 380 CHNTTGNH-PYNVLMTRY--LEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQR 456 (797)
T ss_dssp GGGCSTTS-HHHHHHHHH--HHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHH
T ss_pred ccccCCCc-cHHHHHHHH--HHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHH
Confidence 99998743 222222111 1111 3467899999999631 122223333321100000 0
Q ss_pred CCCCCCceeEEEec------------------------------------------------------------------
Q psy4493 205 PFNRPNLFYEVRIK------------------------------------------------------------------ 218 (323)
Q Consensus 205 ~~~~~~~~~~~~~~------------------------------------------------------------------ 218 (323)
...++...+.....
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (797)
T 4a2q_A 457 FMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEES 536 (797)
T ss_dssp HSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHH
T ss_pred hcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhh
Confidence 00111111111100
Q ss_pred -----------------------------------------------------------------------CCchhHHHH
Q psy4493 219 -----------------------------------------------------------------------PAAQKDCLD 227 (323)
Q Consensus 219 -----------------------------------------------------------------------~~~~~~~~~ 227 (323)
......|+.
T Consensus 537 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~ 616 (797)
T 4a2q_A 537 RICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLE 616 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHH
Confidence 000122445
Q ss_pred HHHHHHHhh---cCCCcEEEEeCChhHHHHHHHHHHhC------------CCeEEeecCCCCCCc---------------
Q psy4493 228 ELADLMSRR---FRNQSGIIYTTSIKECEDLREELRNR------------GLRVSAYHAKLESNV--------------- 277 (323)
Q Consensus 228 ~l~~~l~~~---~~~~~~iVF~~s~~~~~~l~~~L~~~------------~~~v~~~h~~~~~~~--------------- 277 (323)
.|.+++... .++.++||||++++.++.+++.|++. |.....+||++++.+
T Consensus 617 ~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~ 696 (797)
T 4a2q_A 617 ELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR 696 (797)
T ss_dssp HHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCS
T ss_pred HHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCce
Confidence 555555532 36789999999999999999999874 455667788898877
Q ss_pred ----ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 ----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 ----T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++++|+|+|+|++||+||+|+|+..|+||+|| ||. +.|.|+
T Consensus 697 vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i 743 (797)
T 4a2q_A 697 LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCI 743 (797)
T ss_dssp EEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEE
T ss_pred EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEE
Confidence 9999999999999999999999999999999999 998 788775
No 33
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=6.7e-32 Score=272.27 Aligned_cols=275 Identities=17% Similarity=0.192 Sum_probs=199.3
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhc----CC--CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHH
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL----KK--DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINI 78 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~----~~--~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~ 78 (323)
|+.+....+.+...++++. ++.|.++++.++. ++ +.++.+|||+|||.....++ +..
T Consensus 586 ~~~~~~~~~~~~~~f~~~~-t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa----------------~~~ 648 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFET-TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA----------------FLA 648 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSCC-CHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHH----------------HHH
T ss_pred CCCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHH----------------HHH
Confidence 5566667778888888875 9999999998876 55 79999999999997644333 223
Q ss_pred HhcCCcEEEEccchh-------hhh----hcCeee-----------------eccCCCeeEEEEcccccccchhHHHHHH
Q psy4493 79 ALLKKDAIIIMPTGK-------LLK----KKKICL-----------------MTESSSLKLLYVSPEKLAKSKSFMTKLQ 130 (323)
Q Consensus 79 ~~~~~~~lv~~pTgs-------~l~----~~~i~l-----------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~ 130 (323)
+..++.+++++||.. .+. ..++.+ ....+.++|+|+||+.+...
T Consensus 649 ~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~-------- 720 (1151)
T 2eyq_A 649 VDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD-------- 720 (1151)
T ss_dssp HTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSC--------
T ss_pred HHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCC--------
Confidence 456788999999998 222 223331 12245789999999766431
Q ss_pred HHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecC-CCCC
Q psy4493 131 KMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAP-FNRP 209 (323)
Q Consensus 131 ~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~~~ 209 (323)
....+++++||||||++.. .. ...+....++.++++||||+.++... ....++.+...+..+ ..+.
T Consensus 721 --~~~~~l~lvIiDEaH~~g~---~~------~~~l~~l~~~~~vl~lSATp~p~~l~--~~~~~~~~~~~i~~~~~~r~ 787 (1151)
T 2eyq_A 721 --VKFKDLGLLIVDEEHRFGV---RH------KERIKAMRANVDILTLTATPIPRTLN--MAMSGMRDLSIIATPPARRL 787 (1151)
T ss_dssp --CCCSSEEEEEEESGGGSCH---HH------HHHHHHHHTTSEEEEEESSCCCHHHH--HHHTTTSEEEECCCCCCBCB
T ss_pred --ccccccceEEEechHhcCh---HH------HHHHHHhcCCCCEEEEcCCCChhhHH--HHHhcCCCceEEecCCCCcc
Confidence 2346899999999998632 11 12233444578999999999886644 233445555444432 2333
Q ss_pred CceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhC--CCeEEeecCCCCCCc----------
Q psy4493 210 NLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR--GLRVSAYHAKLESNV---------- 277 (323)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~--~~~v~~~h~~~~~~~---------- 277 (323)
++...+.... .......+...+ ..+++++|||++++.++.+++.|++. +.++..+||+|++.+
T Consensus 788 ~i~~~~~~~~--~~~i~~~il~~l---~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~ 862 (1151)
T 2eyq_A 788 AVKTFVREYD--SMVVREAILREI---LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 862 (1151)
T ss_dssp CEEEEEEECC--HHHHHHHHHHHH---TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHT
T ss_pred ccEEEEecCC--HHHHHHHHHHHH---hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHc
Confidence 3443333222 222333333333 36789999999999999999999987 789999999999876
Q ss_pred --------ceeeecccccCCccEEEEccC-CCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 --------SIAFGLGIDKPNVRFVIHHCL-SKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 --------T~~~~~Gid~~~v~~Vi~~~~-p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++++|+|+|++++||+++. +.++.+|.||+||+||.|+.|.|+
T Consensus 863 g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ 916 (1151)
T 2eyq_A 863 QRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAW 916 (1151)
T ss_dssp TSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEE
T ss_pred CCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEE
Confidence 999999999999999999998 568999999999999999999875
No 34
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.3e-31 Score=255.48 Aligned_cols=286 Identities=14% Similarity=0.068 Sum_probs=192.4
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccc
Q psy4493 12 RSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT 91 (323)
Q Consensus 12 ~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pT 91 (323)
++..++.+|+ .+.|.|..++...+.|+ +..++||.|||..+...+ +-..+.|+.++|++||
T Consensus 73 rea~~r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~----------------~l~aL~g~~vlVltpt 133 (844)
T 1tf5_A 73 REASRRVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPV----------------YLNALTGKGVHVVTVN 133 (844)
T ss_dssp HHHHHHHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHH----------------HHHHTTSSCEEEEESS
T ss_pred HHHHHHHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHH----------------HHHHHcCCCEEEEeCC
Confidence 3445566888 88999999999999998 889999999995533222 1112467889999999
Q ss_pred hh-----------hhhhcCeee-----------eccCCCeeEEEEccccc-ccchhHHHHHH---HHHhhCCcceEEEec
Q psy4493 92 GK-----------LLKKKKICL-----------MTESSSLKLLYVSPEKL-AKSKSFMTKLQ---KMYKAGCLARIAIDE 145 (323)
Q Consensus 92 gs-----------~l~~~~i~l-----------~~~~~~~~vii~Tp~~l-~~~~~~~~~l~---~~~~~~~v~~vVvDE 145 (323)
.. .....|+.. ....-.++|+|+||++| .+ .+.+.+. .......+.++||||
T Consensus 134 reLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD--~L~D~m~~~~~~l~lr~~~~lVlDE 211 (844)
T 1tf5_A 134 EYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFD--YLRDNMVLYKEQMVQRPLHFAVIDE 211 (844)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHH--HHHHTTCSSGGGCCCCCCCEEEEET
T ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhcCCCEEEECchhhhHH--HHHHhhhcchhhhcccCCCEEEECc
Confidence 98 222345542 11112479999999999 32 1111211 113346889999999
Q ss_pred ccccc-ccCCC----------chHHHHhHHHHHhhCC----------CCCEE-----------------EEeecCC----
Q psy4493 146 VHCCS-SWGHD----------FRPDYQYLSILKTMFP----------DVPIL-----------------GLTATAT---- 183 (323)
Q Consensus 146 ah~~~-~~~~~----------~r~~~~~l~~l~~~~~----------~~~~i-----------------~lSAT~~---- 183 (323)
||.++ +.+.. ...-|..+..+....+ ..+++ ++|||.+
T Consensus 212 aD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~ 291 (844)
T 1tf5_A 212 VDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNH 291 (844)
T ss_dssp HHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHH
T ss_pred hhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHH
Confidence 99987 43311 0011222333333322 23333 4555543
Q ss_pred --------------------------------------------------------------------------------
Q psy4493 184 -------------------------------------------------------------------------------- 183 (323)
Q Consensus 184 -------------------------------------------------------------------------------- 183 (323)
T Consensus 292 ~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~ 371 (844)
T 1tf5_A 292 HINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLA 371 (844)
T ss_dssp HHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhc
Confidence
Q ss_pred -------hhHHHHHHHHhCCCCcEEEecCCCCCCceeEEE-ecCCchhHHHHHHHHHHHhh-cCCCcEEEEeCChhHHHH
Q psy4493 184 -------TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVR-IKPAAQKDCLDELADLMSRR-FRNQSGIIYTTSIKECED 254 (323)
Q Consensus 184 -------~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~-~~~~~~iVF~~s~~~~~~ 254 (323)
.+ ...+.+.+++. ++..+.++|....... ..-....+|+..|.+.+... ..+.++||||+|++.|+.
T Consensus 372 GmTGTa~te-~~e~~~iY~l~---vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~ 447 (844)
T 1tf5_A 372 GMTGTAKTE-EEEFRNIYNMQ---VVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSEL 447 (844)
T ss_dssp EEESCCGGG-HHHHHHHHCCC---EEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHH
T ss_pred cCCcccchh-HHHHHHHhCCc---eEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHH
Confidence 32 12233333332 1222344444332110 00123567888888887643 357899999999999999
Q ss_pred HHHHHHhCCCeEEeecCCCCCCc----------------ceeeecccccC--------CccEEEEccCCCCHhHHHHHhc
Q psy4493 255 LREELRNRGLRVSAYHAKLESNV----------------SIAFGLGIDKP--------NVRFVIHHCLSKSMENFYQVSI 310 (323)
Q Consensus 255 l~~~L~~~~~~v~~~h~~~~~~~----------------T~~~~~Gid~~--------~v~~Vi~~~~p~~~~~~~qr~G 310 (323)
++..|...|+++..+||++.+.+ |++++||+|++ ++.+||+|++|.|...|+||+|
T Consensus 448 Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~G 527 (844)
T 1tf5_A 448 ISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRG 527 (844)
T ss_dssp HHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTTCEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHT
T ss_pred HHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCCeEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcC
Confidence 99999999999999999987666 99999999999 7889999999999999999999
Q ss_pred cCCCCCCCCCCC
Q psy4493 311 AFGLGKHSFRSR 322 (323)
Q Consensus 311 R~gR~g~~g~~~ 322 (323)
|+||.|++|.|+
T Consensus 528 RTGRqG~~G~s~ 539 (844)
T 1tf5_A 528 RSGRQGDPGITQ 539 (844)
T ss_dssp TSSGGGCCEEEE
T ss_pred ccccCCCCCeEE
Confidence 999999999876
No 35
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.98 E-value=1.2e-32 Score=253.90 Aligned_cols=254 Identities=15% Similarity=0.102 Sum_probs=172.2
Q ss_pred CCCCChhHHHHHHHHhcCCCe-EEEcCCCCCchHHHH-HHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-----
Q psy4493 21 LTDFRPNQLAAINIALLKKDA-IIIMPTDYPWSDRVR-SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----- 93 (323)
Q Consensus 21 ~~~~~~~Q~~~~~~~~~~~~~-~~~~~tg~gkt~~~~-~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs----- 93 (323)
+....|.| ++++.++.+++. ++.+|||+|||..+. .++.. .+..+..+++++||.+
T Consensus 2 ~~q~~~iq-~~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~----------------~~~~~~~~lvl~Ptr~La~Q~ 64 (451)
T 2jlq_A 2 SAMGEPDY-EVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVRE----------------ALLRRLRTLILAPTRVVAAEM 64 (451)
T ss_dssp CCCCSCCC-CCCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHH----------------HHHTTCCEEEEESSHHHHHHH
T ss_pred CCCCCCcH-HHHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHH----------------HHhcCCcEEEECCCHHHHHHH
Confidence 44556666 468888888887 777899999997533 33322 1235678999999999
Q ss_pred --hhhhcCeee------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHH
Q psy4493 94 --LLKKKKICL------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSI 165 (323)
Q Consensus 94 --~l~~~~i~l------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~ 165 (323)
.+....+.. ........+.++|++.+.. .+.......++++||+||||++.. .+......+ .
T Consensus 65 ~~~l~g~~v~~~~~~~~~~~~~~~~i~~~t~~~l~~------~l~~~~~l~~~~~iViDEah~~~~---~~~~~~~~~-~ 134 (451)
T 2jlq_A 65 EEALRGLPIRYQTPAVKSDHTGREIVDLMCHATFTT------RLLSSTRVPNYNLIVMDEAHFTDP---CSVAARGYI-S 134 (451)
T ss_dssp HHHTTTSCEEECCTTCSCCCCSSCCEEEEEHHHHHH------HHHHCSCCCCCSEEEEETTTCCSH---HHHHHHHHH-H
T ss_pred HHHhcCceeeeeeccccccCCCCceEEEEChHHHHH------HhhCcccccCCCEEEEeCCccCCc---chHHHHHHH-H
Confidence 332333331 1223345688899988753 333334456899999999998722 122221112 2
Q ss_pred HHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEE
Q psy4493 166 LKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIY 245 (323)
Q Consensus 166 l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF 245 (323)
.+...++.++++||||++..... .+ ..++..+......|...+ ..+.+.+.+ .++++|||
T Consensus 135 ~~~~~~~~~~i~~SAT~~~~~~~----~~-~~~~~~~~~~~~~p~~~~-------------~~~~~~l~~--~~~~~lVF 194 (451)
T 2jlq_A 135 TRVEMGEAAAIFMTATPPGSTDP----FP-QSNSPIEDIEREIPERSW-------------NTGFDWITD--YQGKTVWF 194 (451)
T ss_dssp HHHHTTSCEEEEECSSCTTCCCS----SC-CCSSCEEEEECCCCSSCC-------------SSSCHHHHH--CCSCEEEE
T ss_pred HhhcCCCceEEEEccCCCccchh----hh-cCCCceEecCccCCchhh-------------HHHHHHHHh--CCCCEEEE
Confidence 22334588999999999875422 11 122222222111111111 112233333 46799999
Q ss_pred eCChhHHHHHHHHHHhCCCeEEeecCCCCCCc--------------ceeeecccccCCccEEEEcc--------------
Q psy4493 246 TTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------SIAFGLGIDKPNVRFVIHHC-------------- 297 (323)
Q Consensus 246 ~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~--------------T~~~~~Gid~~~v~~Vi~~~-------------- 297 (323)
|+|++.|+.+++.|++.|+.+..+|+++.... |+++++|+|+|+ ++||++|
T Consensus 195 ~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~ 273 (451)
T 2jlq_A 195 VPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPER 273 (451)
T ss_dssp CSSHHHHHHHHHHHHTTTCCEEEECTTTHHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCE
T ss_pred cCCHHHHHHHHHHHHHcCCeEEECCHHHHHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccce
Confidence 99999999999999999999999999876433 999999999999 9999999
Q ss_pred ------CCCCHhHHHHHhccCCCCCC-CCCCC
Q psy4493 298 ------LSKSMENFYQVSIAFGLGKH-SFRSR 322 (323)
Q Consensus 298 ------~p~~~~~~~qr~GR~gR~g~-~g~~~ 322 (323)
.|.+..+|+||+||+||.|+ .|.|+
T Consensus 274 l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~ 305 (451)
T 2jlq_A 274 VILAGPIPVTPASAAQRRGRIGRNPAQEDDQY 305 (451)
T ss_dssp EEEEEEEECCHHHHHHHHTTSSCCTTCCCEEE
T ss_pred eeecccccCCHHHHHHhccccCCCCCCCccEE
Confidence 99999999999999999998 77664
No 36
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.98 E-value=1.9e-33 Score=281.92 Aligned_cols=251 Identities=17% Similarity=0.181 Sum_probs=168.0
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEc
Q psy4493 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIM 89 (323)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~ 89 (323)
+..+.+++.+|+. + +.|.++++.++.++++++.+|||+|||....-++.. ....+..+++++
T Consensus 45 ~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~~----------------~~~~~~~~lil~ 106 (1054)
T 1gku_B 45 EFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLF----------------LALKGKRCYVIF 106 (1054)
T ss_dssp HHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHH----------------HHTTSCCEEEEE
T ss_pred HHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHH----------------HhhcCCeEEEEe
Confidence 3557788889999 9 999999999999999999999999999532222221 112467899999
Q ss_pred cchh-------h----hhhcCe----ee----------e-----ccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcc
Q psy4493 90 PTGK-------L----LKKKKI----CL----------M-----TESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLA 139 (323)
Q Consensus 90 pTgs-------~----l~~~~i----~l----------~-----~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~ 139 (323)
||.+ . ....++ .+ . .....++|+|+||++|.+ .+.. +.+++
T Consensus 107 PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~------~l~~---L~~l~ 177 (1054)
T 1gku_B 107 PTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSK------HYRE---LGHFD 177 (1054)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHH------CSTT---SCCCS
T ss_pred ccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHH------HHHH---hccCC
Confidence 9999 1 222334 21 0 001127999999999975 2222 45899
Q ss_pred eEEEeccccccccCCCchHHHHhHHHHH----h-hCCCCCEEEEeecCChhHH----HHHHHHhCCCCcEEEecCCCCCC
Q psy4493 140 RIAIDEVHCCSSWGHDFRPDYQYLSILK----T-MFPDVPILGLTATATTKVM----LDVQKMLQIEDCVVIKAPFNRPN 210 (323)
Q Consensus 140 ~vVvDEah~~~~~~~~~r~~~~~l~~l~----~-~~~~~~~i~lSAT~~~~~~----~~i~~~l~~~~~~~~~~~~~~~~ 210 (323)
++||||||++.+|++.++..+..+.... . ..+..|++++|||+++. . ..+.......- .......++
T Consensus 178 ~lViDEah~~l~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v---~~~~~~~~~ 253 (1054)
T 1gku_B 178 FIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDI---GSSRITVRN 253 (1054)
T ss_dssp EEEESCHHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCC---SCCEECCCC
T ss_pred EEEEeChhhhhhccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEc---cCcccCcCC
Confidence 9999999999997755555443321100 0 11367899999999876 2 11222222110 011122334
Q ss_pred ceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc-------------
Q psy4493 211 LFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------- 277 (323)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------- 277 (323)
+...+.. .++...+.+++.. .+.++||||+|++.|+.+++.|++. +++..+||++....
T Consensus 254 i~~~~~~-----~~k~~~L~~ll~~--~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~~~l~~F~~G~~~VLVa 325 (1054)
T 1gku_B 254 VEDVAVN-----DESISTLSSILEK--LGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKKGDYEKFVEGEIDHLIG 325 (1054)
T ss_dssp EEEEEES-----CCCTTTTHHHHTT--SCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSSHHHHHHHHTSCSEEEE
T ss_pred ceEEEec-----hhHHHHHHHHHhh--cCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHHHHHHHHHcCCCcEEEE
Confidence 4433331 2244456666664 3689999999999999999999988 99999999985332
Q ss_pred ----ceeeecccccCCc-cEEEEccCC
Q psy4493 278 ----SIAFGLGIDKPNV-RFVIHHCLS 299 (323)
Q Consensus 278 ----T~~~~~Gid~~~v-~~Vi~~~~p 299 (323)
|+++++|+|+|+| ++||++|+|
T Consensus 326 Tas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 326 TAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp ECC------CCSCCTTTCCEEEEESCC
T ss_pred ecCCCCeeEeccccCCcccEEEEeCCC
Confidence 3899999999996 999999999
No 37
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.98 E-value=1.9e-31 Score=265.32 Aligned_cols=281 Identities=15% Similarity=0.159 Sum_probs=158.7
Q ss_pred cCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-----
Q psy4493 19 FNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----- 93 (323)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs----- 93 (323)
.+...+|+.|.++++.++.++++++.+|||+|||......+...+.-.. ...+..++|++||.+
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~-----------~~~~~~vLvl~Pt~~L~~Q~ 312 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-----------AGRKAKVVFLATKVPVYEQQ 312 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC-----------SSCCCCEEEECSSHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc-----------ccCCCeEEEEeCCHHHHHHH
Confidence 3478899999999999999999999999999999776655544211000 001567999999998
Q ss_pred --hhhh----cCeee------e-------ccCCCeeEEEEcccccccchhHHHHHHH-HH-hhCCcceEEEecccccccc
Q psy4493 94 --LLKK----KKICL------M-------TESSSLKLLYVSPEKLAKSKSFMTKLQK-MY-KAGCLARIAIDEVHCCSSW 152 (323)
Q Consensus 94 --~l~~----~~i~l------~-------~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~-~~~~v~~vVvDEah~~~~~ 152 (323)
.+.. .++.+ . .....++|+|+||++|.+ .+.. .. ...++++|||||||++...
T Consensus 313 ~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~------~l~~~~~~~l~~~~liViDEaH~~~~~ 386 (936)
T 4a2w_A 313 KNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVN------SFEDGTLTSLSIFTLMIFDECHNTTGN 386 (936)
T ss_dssp HHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHH------HHHSSSCCCGGGCSEEEEETGGGCSTT
T ss_pred HHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHH------HHHcCccccccCCCEEEEECccccCCC
Confidence 2222 24442 0 111356999999999974 3333 11 3457899999999999874
Q ss_pred CCCchHHHHhHHHHHhh-----CCCCCEEEEeecCChh----------HHHHHHHHhCCCCcEEEe-------cCCCCCC
Q psy4493 153 GHDFRPDYQYLSILKTM-----FPDVPILGLTATATTK----------VMLDVQKMLQIEDCVVIK-------APFNRPN 210 (323)
Q Consensus 153 ~~~~r~~~~~l~~l~~~-----~~~~~~i~lSAT~~~~----------~~~~i~~~l~~~~~~~~~-------~~~~~~~ 210 (323)
+ .+...... +... .+..++++||||+... ....+...++........ .....+.
T Consensus 387 ~-~~~~i~~~---~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~ 462 (936)
T 4a2w_A 387 H-PYNVLMTR---YLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPE 462 (936)
T ss_dssp C-HHHHHHHH---HHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCC
T ss_pred c-cHHHHHHH---HHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCc
Confidence 3 22222211 2221 3467899999999531 112222333321100000 0001111
Q ss_pred ceeEEEec------------------------------------------------------------------------
Q psy4493 211 LFYEVRIK------------------------------------------------------------------------ 218 (323)
Q Consensus 211 ~~~~~~~~------------------------------------------------------------------------ 218 (323)
..+.....
T Consensus 463 ~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l 542 (936)
T 4a2w_A 463 IDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRAL 542 (936)
T ss_dssp EEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHH
T ss_pred ceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 11111000
Q ss_pred -----------------------------------------------------------------CCchhHHHHHHHHHH
Q psy4493 219 -----------------------------------------------------------------PAAQKDCLDELADLM 233 (323)
Q Consensus 219 -----------------------------------------------------------------~~~~~~~~~~l~~~l 233 (323)
......++..|.+++
T Consensus 543 ~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL 622 (936)
T 4a2w_A 543 FICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCIL 622 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHH
Confidence 000122444555566
Q ss_pred Hhh---cCCCcEEEEeCChhHHHHHHHHHHhC------------CCeEEeecCCCCCCc-------------------ce
Q psy4493 234 SRR---FRNQSGIIYTTSIKECEDLREELRNR------------GLRVSAYHAKLESNV-------------------SI 279 (323)
Q Consensus 234 ~~~---~~~~~~iVF~~s~~~~~~l~~~L~~~------------~~~v~~~h~~~~~~~-------------------T~ 279 (323)
.+. ..+.++||||++++.++.+++.|.+. |.....+||+|++.+ |+
T Consensus 623 ~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~ 702 (936)
T 4a2w_A 623 DDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS 702 (936)
T ss_dssp HHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEEC
T ss_pred HHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC
Confidence 543 35689999999999999999999986 555666788898877 99
Q ss_pred eeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 280 ~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
++++|+|+|+|++||+||+|+|+..|+||+|| ||. +.|.++
T Consensus 703 ~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi 743 (936)
T 4a2w_A 703 VADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCI 743 (936)
T ss_dssp C------CCCCSEEEEESCCSCSHHHHCC---------CCCEE
T ss_pred chhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEE
Confidence 99999999999999999999999999999999 998 677764
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.97 E-value=1.1e-31 Score=278.07 Aligned_cols=285 Identities=16% Similarity=0.146 Sum_probs=188.1
Q ss_pred Hhc-CCCCCChhHHHHHHHHhc-CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-
Q psy4493 17 SKF-NLTDFRPNQLAAINIALL-KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK- 93 (323)
Q Consensus 17 ~~~-~~~~~~~~Q~~~~~~~~~-~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs- 93 (323)
..| |++.|.+.|.++++.++. ++++++.+|||+|||....-++.+.+.-....+. .....+..+++++|+.+
T Consensus 72 ~~f~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~-----~~~~~~~k~lyiaP~kAL 146 (1724)
T 4f92_B 72 AGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDG-----TINVDDFKIIYIAPMRSL 146 (1724)
T ss_dssp TTCTTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTS-----SCCTTSCEEEEECSSHHH
T ss_pred HhcCCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccc-----cccCCCCEEEEECCHHHH
Confidence 344 588999999999998874 7789999999999997654443321100000000 00013456999999999
Q ss_pred ----------hhhhcCeee----------eccCCCeeEEEEcccccccchhHHHHHHH---HHhhCCcceEEEecccccc
Q psy4493 94 ----------LLKKKKICL----------MTESSSLKLLYVSPEKLAKSKSFMTKLQK---MYKAGCLARIAIDEVHCCS 150 (323)
Q Consensus 94 ----------~l~~~~i~l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~---~~~~~~v~~vVvDEah~~~ 150 (323)
.+...|+.+ ......++|+|+|||++.. ++++ ....+++++|||||+|.+.
T Consensus 147 a~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~------llr~~~~~~~l~~v~~vIiDEvH~l~ 220 (1724)
T 4f92_B 147 VQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDI------ITRKGGERTYTQLVRLIILDEIHLLH 220 (1724)
T ss_dssp HHHHHHHHHHHHTTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHH------HTTSSTTHHHHTTEEEEEETTGGGGG
T ss_pred HHHHHHHHHHHHhhCCCEEEEEECCCCCCccccCCCCEEEECHHHHHH------HHcCCccchhhcCcCEEEEecchhcC
Confidence 444556652 1223468999999998732 2211 1235689999999999886
Q ss_pred ccCCCchHHHHh--HHHH----HhhCCCCCEEEEeecCChhHHHHHHHHhCCCCc---EEEecCCCCCCceeEEEecCCc
Q psy4493 151 SWGHDFRPDYQY--LSIL----KTMFPDVPILGLTATATTKVMLDVQKMLQIEDC---VVIKAPFNRPNLFYEVRIKPAA 221 (323)
Q Consensus 151 ~~~~~~r~~~~~--l~~l----~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 221 (323)
+ .|....+ +..+ ....+++|+|+||||+++ .+++.+||+.... ..+..+..+-++...+......
T Consensus 221 d----~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N--~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~ 294 (1724)
T 4f92_B 221 D----DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPN--YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEK 294 (1724)
T ss_dssp S----TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTT--HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCC
T ss_pred C----ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCC--HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCc
Confidence 4 2433222 1222 233458899999999998 5678999876432 2333333232333222222221
Q ss_pred -hhHHH----HHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhC----------------------------------
Q psy4493 222 -QKDCL----DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR---------------------------------- 262 (323)
Q Consensus 222 -~~~~~----~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~---------------------------------- 262 (323)
..... ..+.+.+.+...++++||||+|++.|+.+|+.|.+.
T Consensus 295 ~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 374 (1724)
T 4f92_B 295 KAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELK 374 (1724)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHH
Confidence 11122 223344444556789999999999999999888641
Q ss_pred ---CCeEEeecCCCCCCc------------------ceeeecccccCCccEEEE----cc------CCCCHhHHHHHhcc
Q psy4493 263 ---GLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIH----HC------LSKSMENFYQVSIA 311 (323)
Q Consensus 263 ---~~~v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~----~~------~p~~~~~~~qr~GR 311 (323)
...++++||+|+.++ |+++++|||+|.++.||. |+ .|.+..+|+||+||
T Consensus 375 ~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GR 454 (1724)
T 4f92_B 375 DLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGR 454 (1724)
T ss_dssp HHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTT
T ss_pred HHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhh
Confidence 123899999999998 999999999999988885 43 35689999999999
Q ss_pred CCCCCCC
Q psy4493 312 FGLGKHS 318 (323)
Q Consensus 312 ~gR~g~~ 318 (323)
|||.|..
T Consensus 455 AGR~g~d 461 (1724)
T 4f92_B 455 AGRPQYD 461 (1724)
T ss_dssp BSCTTTC
T ss_pred ccCCCCC
Confidence 9998854
No 39
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.97 E-value=4.1e-31 Score=257.05 Aligned_cols=284 Identities=12% Similarity=0.043 Sum_probs=193.6
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhc-CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhc--
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL-KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL-- 81 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~-~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~-- 81 (323)
+++++++.+.++.+. ..+.+.|.+++..++. ++++++.+|||+|||..+...+... ....
T Consensus 77 ~~l~~~~~~~l~~r~--~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~---------------~~~~~~ 139 (773)
T 2xau_A 77 REFTPKYVDILKIRR--ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFD---------------EMPHLE 139 (773)
T ss_dssp SBCCHHHHHHHHHHT--TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHH---------------HCGGGG
T ss_pred cCCCHHHHHHHHHhh--cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHh---------------ccccCC
Confidence 566788888888875 4556678887776665 5668899999999997544333210 0112
Q ss_pred CCcEEEEccchh-------hh-hhcCeee-----------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEE
Q psy4493 82 KKDAIIIMPTGK-------LL-KKKKICL-----------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIA 142 (323)
Q Consensus 82 ~~~~lv~~pTgs-------~l-~~~~i~l-----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vV 142 (323)
+..++++.|+.. .+ ...+..+ .......+|+++||+++.+ .+.......++++||
T Consensus 140 g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r------~l~~~~~l~~~~~lI 213 (773)
T 2xau_A 140 NTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLR------EAMEDHDLSRYSCII 213 (773)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHH------HHHHSTTCTTEEEEE
T ss_pred CceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHH------HHhhCccccCCCEEE
Confidence 556899999987 11 1122221 2334577899999999874 222223467899999
Q ss_pred Eecccc-ccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecCCc
Q psy4493 143 IDEVHC-CSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAA 221 (323)
Q Consensus 143 vDEah~-~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (323)
+||+|. ..+. ...+..+..+....++.++++||||++.+ .+.++++-. .++.......++...+......
T Consensus 214 lDEah~R~ld~----d~~~~~l~~l~~~~~~~~iIl~SAT~~~~---~l~~~~~~~--~vi~v~gr~~pv~~~~~~~~~~ 284 (773)
T 2xau_A 214 LDEAHERTLAT----DILMGLLKQVVKRRPDLKIIIMSATLDAE---KFQRYFNDA--PLLAVPGRTYPVELYYTPEFQR 284 (773)
T ss_dssp ECSGGGCCHHH----HHHHHHHHHHHHHCTTCEEEEEESCSCCH---HHHHHTTSC--CEEECCCCCCCEEEECCSSCCS
T ss_pred ecCccccccch----HHHHHHHHHHHHhCCCceEEEEeccccHH---HHHHHhcCC--CcccccCcccceEEEEecCCch
Confidence 999995 3321 11123345566666788999999999753 456666432 2333332222333222222211
Q ss_pred --hhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHh-----------CCCeEEeecCCCCCCc-----------
Q psy4493 222 --QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRN-----------RGLRVSAYHAKLESNV----------- 277 (323)
Q Consensus 222 --~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~-----------~~~~v~~~h~~~~~~~----------- 277 (323)
....+..+.+.... ..++++||||+++++|+.+++.|.+ .++.+..+||+|++++
T Consensus 285 ~~~~~~l~~l~~~~~~-~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~ 363 (773)
T 2xau_A 285 DYLDSAIRTVLQIHAT-EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPES 363 (773)
T ss_dssp CHHHHHHHHHHHHHHH-SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCC
T ss_pred hHHHHHHHHHHHHHHh-cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccc
Confidence 12233344444432 2578999999999999999999985 5788999999987422
Q ss_pred ------------ceeeecccccCCccEEEEccC------------------CCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 ------------SIAFGLGIDKPNVRFVIHHCL------------------SKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 ------------T~~~~~Gid~~~v~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++++|+|+|+|++||++|+ |.|..+|+||+||+||. +.|.|+
T Consensus 364 ~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~ 437 (773)
T 2xau_A 364 HNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCF 437 (773)
T ss_dssp SSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEE
T ss_pred cCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEE
Confidence 999999999999999999988 88999999999999999 788875
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.97 E-value=9.7e-32 Score=278.44 Aligned_cols=276 Identities=13% Similarity=0.117 Sum_probs=189.4
Q ss_pred CCCCCChhHHHHHHHHhc-CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhc--CCcEEEEccchh---
Q psy4493 20 NLTDFRPNQLAAINIALL-KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL--KKDAIIIMPTGK--- 93 (323)
Q Consensus 20 ~~~~~~~~Q~~~~~~~~~-~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~--~~~~lv~~pTgs--- 93 (323)
+++.|.|.|.++++.++. ++++++.+|||+|||....-++. ..+.+ +..+++++||.+
T Consensus 923 ~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail----------------~~l~~~~~~kavyi~P~raLa~ 986 (1724)
T 4f92_B 923 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAIL----------------RMLLQSSEGRCVYITPMEALAE 986 (1724)
T ss_dssp TCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHH----------------HHHHHCTTCCEEEECSCHHHHH
T ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHH----------------HHHHhCCCCEEEEEcChHHHHH
Confidence 477899999999999975 56799999999999976444442 23333 456999999999
Q ss_pred ----h----hhh-cCeee----------eccCCCeeEEEEcccccccchhHHHHHH---HHHhhCCcceEEEeccccccc
Q psy4493 94 ----L----LKK-KKICL----------MTESSSLKLLYVSPEKLAKSKSFMTKLQ---KMYKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 94 ----~----l~~-~~i~l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~---~~~~~~~v~~vVvDEah~~~~ 151 (323)
. +.. .|+.+ .....+++|+|+|||++.. +++ .....++|++||+||+|++.+
T Consensus 987 q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~------llr~~~~~~~l~~v~lvViDE~H~l~d 1060 (1724)
T 4f92_B 987 QVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDI------LSRRWKQRKNVQNINLFVVDEVHLIGG 1060 (1724)
T ss_dssp HHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHH------HHTTTTTCHHHHSCSEEEECCGGGGGS
T ss_pred HHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHH------HHhCcccccccceeeEEEeechhhcCC
Confidence 1 211 34442 1112457899999999842 222 123346899999999998875
Q ss_pred cCCCchHHH----HhHHHHHhhC-CCCCEEEEeecCChhHHHHHHHHhCCCCcEEEec-CCCCC-CceeEEEecCCc-hh
Q psy4493 152 WGHDFRPDY----QYLSILKTMF-PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKA-PFNRP-NLFYEVRIKPAA-QK 223 (323)
Q Consensus 152 ~~~~~r~~~----~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~-~~~~~~~~~~~~-~~ 223 (323)
. ..+.+ .++..+.... ++.|+|+||||+++ .+++.+||+......+.. +..+| .+...+...... ..
T Consensus 1061 ~---rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N--~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~ 1135 (1724)
T 4f92_B 1061 E---NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN--AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQ 1135 (1724)
T ss_dssp T---THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT--HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHH
T ss_pred C---CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC--HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCch
Confidence 2 22322 2222233333 47899999999998 568899998865444333 22333 333333322221 11
Q ss_pred ----HHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhC----------------------------------CCe
Q psy4493 224 ----DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR----------------------------------GLR 265 (323)
Q Consensus 224 ----~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~----------------------------------~~~ 265 (323)
.....+...+.....++++||||+|++.|+.++..|... ...
T Consensus 1136 ~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~G 1215 (1724)
T 4f92_B 1136 TRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNG 1215 (1724)
T ss_dssp HHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTT
T ss_pred hhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCC
Confidence 122334455555667899999999999999988777431 123
Q ss_pred EEeecCCCCCCc------------------ceeeecccccCCccEEEE----------ccCCCCHhHHHHHhccCCCCCC
Q psy4493 266 VSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIH----------HCLSKSMENFYQVSIAFGLGKH 317 (323)
Q Consensus 266 v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~----------~~~p~~~~~~~qr~GR~gR~g~ 317 (323)
++.+||+|++.+ |+++++|||+|++++||. ...|.+..+|+||+|||||.|.
T Consensus 1216 Ia~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~ 1295 (1724)
T 4f92_B 1216 VGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQ 1295 (1724)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTT
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCC
Confidence 899999999998 999999999998888883 2246789999999999999997
Q ss_pred C--CCCC
Q psy4493 318 S--FRSR 322 (323)
Q Consensus 318 ~--g~~~ 322 (323)
+ |+|+
T Consensus 1296 d~~G~av 1302 (1724)
T 4f92_B 1296 DDEGRCV 1302 (1724)
T ss_dssp CSCEEEE
T ss_pred CCceEEE
Confidence 4 5553
No 41
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.97 E-value=1.2e-32 Score=260.05 Aligned_cols=238 Identities=17% Similarity=0.129 Sum_probs=164.6
Q ss_pred ChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------hh-h
Q psy4493 25 RPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------LL-K 96 (323)
Q Consensus 25 ~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------~l-~ 96 (323)
++.|.++++.+..++++++.+|||+|||..+...+ +.++..+++++||.. .+ .
T Consensus 219 ~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~l-------------------l~~g~~vLVl~PTReLA~Qia~~l~~ 279 (666)
T 3o8b_A 219 FTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAY-------------------AAQGYKVLVLNPSVAATLGFGAYMSK 279 (666)
T ss_dssp CCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHH-------------------HHTTCCEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHH-------------------HHCCCeEEEEcchHHHHHHHHHHHHH
Confidence 34454555555677889999999999996644433 224668999999998 11 1
Q ss_pred hcCee--e----eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhC
Q psy4493 97 KKKIC--L----MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170 (323)
Q Consensus 97 ~~~i~--l----~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~ 170 (323)
..+.. + .......+|+|+||++|+.. ......+++++||||||++.. ++...+.. +....
T Consensus 280 ~~g~~vg~~vG~~~~~~~~~IlV~TPGrLl~~--------~~l~l~~l~~lVlDEAH~l~~---~~~~~l~~---Il~~l 345 (666)
T 3o8b_A 280 AHGIDPNIRTGVRTITTGAPVTYSTYGKFLAD--------GGCSGGAYDIIICDECHSTDS---TTILGIGT---VLDQA 345 (666)
T ss_dssp HHSCCCEEECSSCEECCCCSEEEEEHHHHHHT--------TSCCTTSCSEEEETTTTCCSH---HHHHHHHH---HHHHT
T ss_pred HhCCCeeEEECcEeccCCCCEEEECcHHHHhC--------CCcccCcccEEEEccchhcCc---cHHHHHHH---HHHhh
Confidence 12222 1 23456789999999998531 123345799999999987643 24444444 44443
Q ss_pred C-CCC--EEEEeecCChhHHHHHHHHhCCCCcE--EEecCCCCCCceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEE
Q psy4493 171 P-DVP--ILGLTATATTKVMLDVQKMLQIEDCV--VIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIY 245 (323)
Q Consensus 171 ~-~~~--~i~lSAT~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF 245 (323)
+ ..+ ++++|||+++.. ....+. .+....... +.+ .. ... . +. ..+++++|||
T Consensus 346 ~~~~~~llil~SAT~~~~i--------~~~~p~i~~v~~~~~~~-i~~----~~-~~~-~-------l~-~~~~~~vLVF 402 (666)
T 3o8b_A 346 ETAGARLVVLATATPPGSV--------TVPHPNIEEVALSNTGE-IPF----YG-KAI-P-------IE-AIRGGRHLIF 402 (666)
T ss_dssp TTTTCSEEEEEESSCTTCC--------CCCCTTEEEEECBSCSS-EEE----TT-EEE-C-------GG-GSSSSEEEEE
T ss_pred hhcCCceEEEECCCCCccc--------ccCCcceEEEeecccch-hHH----HH-hhh-h-------hh-hccCCcEEEE
Confidence 3 333 788899998742 111111 111111111 110 00 000 0 11 2367899999
Q ss_pred eCChhHHHHHHHHHHhCCCeEEeecCCCCCCc-----------ceeeecccccCCccEEE----------Ecc-------
Q psy4493 246 TTSIKECEDLREELRNRGLRVSAYHAKLESNV-----------SIAFGLGIDKPNVRFVI----------HHC------- 297 (323)
Q Consensus 246 ~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~-----------T~~~~~Gid~~~v~~Vi----------~~~------- 297 (323)
|+|++.|+.+++.|++.|+++..+||++++++ |+++++|||+| +++|| |||
T Consensus 403 v~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~er~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl 481 (666)
T 3o8b_A 403 CHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTI 481 (666)
T ss_dssp CSCHHHHHHHHHHHHTTTCCEEEECTTSCGGGSCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEE
T ss_pred eCCHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccc
Confidence 99999999999999999999999999999887 99999999997 99998 677
Q ss_pred ----CCCCHhHHHHHhccCCCCCCCCC
Q psy4493 298 ----LSKSMENFYQVSIAFGLGKHSFR 320 (323)
Q Consensus 298 ----~p~~~~~~~qr~GR~gR~g~~g~ 320 (323)
.|.+..+|+||+||+|| |+.|+
T Consensus 482 ~~~~~P~s~~syiQRiGRtGR-g~~G~ 507 (666)
T 3o8b_A 482 ETTTVPQDAVSRSQRRGRTGR-GRRGI 507 (666)
T ss_dssp EEEEEECBHHHHHHHHTTBCS-SSCEE
T ss_pred ccccCcCCHHHHHHHhccCCC-CCCCE
Confidence 89999999999999999 88886
No 42
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.97 E-value=1.3e-30 Score=248.56 Aligned_cols=279 Identities=18% Similarity=0.139 Sum_probs=167.1
Q ss_pred CCCChhHHHHHHHHhc----C-CCeEEEcCCCCCchHHHHHHHHhcCC--CCCCCcchHHHHHHHhcCCcEEEEccchhh
Q psy4493 22 TDFRPNQLAAINIALL----K-KDAIIIMPTDYPWSDRVRSVLKSKFN--LTDFRPNQLAAINIALLKKDAIIIMPTGKL 94 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~----~-~~~~~~~~tg~gkt~~~~~~l~~~~g--~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs~ 94 (323)
..+|++|.++++.++. + +++++.+|||+|||..+...+...+. +..-. -..++.+++++||.+.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~---------~~~~~~vlil~P~~~L 247 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTG---------DYRKPRILFLADRNVL 247 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSC---------SSSCCCEEEEEC----
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhccccccc---------ccCCCeEEEEeCCHHH
Confidence 3699999999998875 4 55889999999999776555433110 00000 0045779999999882
Q ss_pred hhh--------cCee---e--eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHH
Q psy4493 95 LKK--------KKIC---L--MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQ 161 (323)
Q Consensus 95 l~~--------~~i~---l--~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~ 161 (323)
..+ .+.. + .......+|+|+||+++...... ..+...+....+++|||||||++...+ ..
T Consensus 248 ~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~-~~~~~~~~~~~~~lvIiDEaH~~~~~~------~~ 320 (590)
T 3h1t_A 248 VDDPKDKTFTPFGDARHKIEGGKVVKSREIYFAIYQSIASDERR-PGLYKEFPQDFFDLIIIDECHRGSARD------NS 320 (590)
T ss_dssp -------CCTTTCSSEEECCC--CCSSCSEEEEEGGGC-------CCGGGGSCTTSCSEEEESCCC--------------
T ss_pred HHHHHHHHHHhcchhhhhhhccCCCCCCcEEEEEhhhhcccccc-ccccccCCCCccCEEEEECCccccccc------hH
Confidence 222 1111 1 23346789999999999741000 000112234578999999999986531 01
Q ss_pred hHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEec------CCCCCCceeEEEec-----------------
Q psy4493 162 YLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKA------PFNRPNLFYEVRIK----------------- 218 (323)
Q Consensus 162 ~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~------~~~~~~~~~~~~~~----------------- 218 (323)
.+..+...+++.++++||||+...........++..-. .+.. ....+.....+...
T Consensus 321 ~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~~~~-~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (590)
T 3h1t_A 321 NWREILEYFEPAFQIGMTATPLREDNRDTYRYFGNPIY-TYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFG 399 (590)
T ss_dssp -CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSCSCSE-EECHHHHHHHTSSCCEEEEEEEETTCC--------------
T ss_pred HHHHHHHhCCcceEEEeccccccccchhHHHHcCCceE-ecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccc
Confidence 22335556677889999999987655555555543210 0000 00011000000000
Q ss_pred ---------CCc----------hhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCC--------eEEeecC
Q psy4493 219 ---------PAA----------QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGL--------RVSAYHA 271 (323)
Q Consensus 219 ---------~~~----------~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~--------~v~~~h~ 271 (323)
... .......+.+.+.....++++||||++++.|+.+++.|.+.+. .+..+||
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g 479 (590)
T 3h1t_A 400 REIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTS 479 (590)
T ss_dssp ---------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSS
T ss_pred cccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeC
Confidence 000 0011223444444434568999999999999999999987543 2778899
Q ss_pred CCCC-Cc-------------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCC
Q psy4493 272 KLES-NV-------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKH 317 (323)
Q Consensus 272 ~~~~-~~-------------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~ 317 (323)
.++. .+ |+++++|+|+|++++||+++.|.|...|+||+||+||.|.
T Consensus 480 ~~~~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 480 EEGKIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TTHHHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred CChHHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 8875 11 7899999999999999999999999999999999999875
No 43
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.97 E-value=7.9e-31 Score=243.74 Aligned_cols=254 Identities=17% Similarity=0.149 Sum_probs=177.5
Q ss_pred CCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------hh
Q psy4493 23 DFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------LL 95 (323)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------~l 95 (323)
.++++|.++++.++.++++++.+|||+|||......+.. .++.+++++||.+ .+
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~-------------------~~~~~Lvl~P~~~L~~Q~~~~~ 153 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE-------------------LSTPTLIVVPTLALAEQWKERL 153 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHH-------------------HCSCEEEEESSHHHHHHHHHHG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHH-------------------cCCCEEEEECCHHHHHHHHHHH
Confidence 689999999999999888999999999999765555432 2678999999987 44
Q ss_pred hhcCee-e----eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhC
Q psy4493 96 KKKKIC-L----MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF 170 (323)
Q Consensus 96 ~~~~i~-l----~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~ 170 (323)
.+.++. + .......+|+|+||+.+.. .+.. ...++++|||||||++...+ ++. +...+
T Consensus 154 ~~~~~~~v~~~~g~~~~~~~Ivv~T~~~l~~------~~~~--~~~~~~liIvDEaH~~~~~~--~~~-------~~~~~ 216 (472)
T 2fwr_A 154 GIFGEEYVGEFSGRIKELKPLTVSTYDSAYV------NAEK--LGNRFMLLIFDEVHHLPAES--YVQ-------IAQMS 216 (472)
T ss_dssp GGGCGGGEEEBSSSCBCCCSEEEEEHHHHHH------THHH--HTTTCSEEEEETGGGTTSTT--THH-------HHHTC
T ss_pred HhCCCcceEEECCCcCCcCCEEEEEcHHHHH------HHHH--hcCCCCEEEEECCcCCCChH--HHH-------HHHhc
Confidence 445554 3 2223457899999998864 1111 12469999999999997632 432 34455
Q ss_pred CCCCEEEEeecCChhHH--HHHHHHhC---------------CCCcEEEec--CCC------------------------
Q psy4493 171 PDVPILGLTATATTKVM--LDVQKMLQ---------------IEDCVVIKA--PFN------------------------ 207 (323)
Q Consensus 171 ~~~~~i~lSAT~~~~~~--~~i~~~l~---------------~~~~~~~~~--~~~------------------------ 207 (323)
+..++++||||+.+... ..+..+++ +.++..... ...
T Consensus 217 ~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (472)
T 2fwr_A 217 IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGIT 296 (472)
T ss_dssp CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCT
T ss_pred CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 67889999999984311 01122211 111111100 000
Q ss_pred ---CCCceeEEEe---cC----------------CchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCe
Q psy4493 208 ---RPNLFYEVRI---KP----------------AAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLR 265 (323)
Q Consensus 208 ---~~~~~~~~~~---~~----------------~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~ 265 (323)
.......+.. .+ .....+...+.+++.. ..+.++||||++++.++.+++.|.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~----- 370 (472)
T 2fwr_A 297 LRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL----- 370 (472)
T ss_dssp TTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----
T ss_pred ccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----
Confidence 0000000000 00 0122456677777775 478999999999999999999984
Q ss_pred EEeecCCCCCCc------------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCC
Q psy4493 266 VSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHS 318 (323)
Q Consensus 266 v~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~ 318 (323)
+..+||+++..+ |+++++|+|+|++++||++|.|+++..|+||+||+||.|+.
T Consensus 371 ~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~ 441 (472)
T 2fwr_A 371 IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKG 441 (472)
T ss_dssp CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTT
T ss_pred cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCC
Confidence 668999998876 99999999999999999999999999999999999999954
No 44
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.97 E-value=3.3e-30 Score=241.77 Aligned_cols=263 Identities=14% Similarity=0.058 Sum_probs=178.2
Q ss_pred CCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCC-cEEEEccchh-------
Q psy4493 22 TDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKK-DAIIIMPTGK------- 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~-~~lv~~pTgs------- 93 (323)
..+++.|.++++.++.+++.++.+|||+|||......+.. .+..++ .+++++||.+
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~----------------~~~~~~~~vlvl~P~~~L~~Q~~~ 175 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARY----------------YLENYEGKILIIVPTTALTTQMAD 175 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHH----------------HHHHCSSEEEEEESSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHH----------------HHhCCCCeEEEEECcHHHHHHHHH
Confidence 3789999999999999999999999999999776544432 122344 8999999988
Q ss_pred hhhhcC------ee-e---ec----cCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHH
Q psy4493 94 LLKKKK------IC-L---MT----ESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPD 159 (323)
Q Consensus 94 ~l~~~~------i~-l---~~----~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~ 159 (323)
.+.+.+ +. + .. .....+|+|+||+.+.... .....++++|||||||++.. ..
T Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~~--------~~~~~~~~liIiDE~H~~~~------~~ 241 (510)
T 2oca_A 176 DFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQP--------KEWFSQFGMMMNDECHLATG------KS 241 (510)
T ss_dssp HHHHTTSSCGGGEEECGGGCCTTGGGCTTCSEEEEEHHHHTTSC--------GGGGGGEEEEEEETGGGCCH------HH
T ss_pred HHHHhhcCCccceEEEecCCccccccccCCcEEEEeHHHHhhch--------hhhhhcCCEEEEECCcCCCc------cc
Confidence 333321 11 1 11 1267899999999987521 12335789999999999865 12
Q ss_pred HHhHHHHHhhC-CCCCEEEEeecCChhHHH--HHHHHhCCCCcEEEecCCC-------CCCceeEEEe--cC--------
Q psy4493 160 YQYLSILKTMF-PDVPILGLTATATTKVML--DVQKMLQIEDCVVIKAPFN-------RPNLFYEVRI--KP-------- 219 (323)
Q Consensus 160 ~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~--~i~~~l~~~~~~~~~~~~~-------~~~~~~~~~~--~~-------- 219 (323)
+..+...+ +..++++||||+++.... .....++ +..+..+.. .+...+.... .+
T Consensus 242 ---~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 315 (510)
T 2oca_A 242 ---ISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFG---EIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLK 315 (510)
T ss_dssp ---HHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHC---SEECCCCCC---------CCEEEEEEEECCHHHHHHHT
T ss_pred ---HHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhC---CeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhcccc
Confidence 33343444 577899999999765322 1222332 122111110 0111111111 00
Q ss_pred -Cc----------hhHHHHHHHHHHHhhc--CCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc---------
Q psy4493 220 -AA----------QKDCLDELADLMSRRF--RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------- 277 (323)
Q Consensus 220 -~~----------~~~~~~~l~~~l~~~~--~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~--------- 277 (323)
.. ...+...+.+.+.... .+.++||||+ ++.|+.+++.|.+.+.++..+||+++..+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~ 394 (510)
T 2oca_A 316 GKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAE 394 (510)
T ss_dssp TCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHH
T ss_pred ccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHh
Confidence 00 0112333444444321 3455666666 99999999999998889999999999776
Q ss_pred ---------c-eeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCC
Q psy4493 278 ---------S-IAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRS 321 (323)
Q Consensus 278 ---------T-~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~ 321 (323)
| +++++|+|+|++++||+++.|.+...|+||+||+||.|+.+.+
T Consensus 395 ~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~ 448 (510)
T 2oca_A 395 NGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTI 448 (510)
T ss_dssp HCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCC
T ss_pred CCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCce
Confidence 8 9999999999999999999999999999999999999988744
No 45
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.97 E-value=1.3e-30 Score=239.32 Aligned_cols=243 Identities=12% Similarity=0.042 Sum_probs=159.0
Q ss_pred HhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHH-hcCCcEEEEccchh-------hhhhcCeeeeccC
Q psy4493 35 ALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIA-LLKKDAIIIMPTGK-------LLKKKKICLMTES 106 (323)
Q Consensus 35 ~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~-~~~~~~lv~~pTgs-------~l~~~~i~l~~~~ 106 (323)
+..++++++.+|||+|||..+...+.. .+ ..+..+++++||.. .+...++.+..
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~----------------~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v~~~~-- 66 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILA----------------ECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKFHT-- 66 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHH----------------HHHHTTCCEEEEESSHHHHHHHHHHTTTSCEEEES--
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHH----------------HHHhcCCeEEEEcchHHHHHHHHHHHhcCCeEEec--
Confidence 456889999999999999774332211 11 24568999999999 34444444211
Q ss_pred CCeeEEEEcccccccch---hHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCC
Q psy4493 107 SSLKLLYVSPEKLAKSK---SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183 (323)
Q Consensus 107 ~~~~vii~Tp~~l~~~~---~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~ 183 (323)
.... .++||+++.+.- .+...+.......+++++|+||||++.. .+...+..+..+.. .++.++++||||++
T Consensus 67 ~~~~-~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~---~~~~~~~~~~~~~~-~~~~~~l~~SAT~~ 141 (440)
T 1yks_A 67 QAFS-AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDP---ASIAARGWAAHRAR-ANESATILMTATPP 141 (440)
T ss_dssp SCCC-CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSH---HHHHHHHHHHHHHH-TTSCEEEEECSSCT
T ss_pred ccce-eccCCccceeeecccchhHhhhCcccccCccEEEEECccccCc---chHHHHHHHHHHhc-cCCceEEEEeCCCC
Confidence 1111 489999887421 1111111112257899999999999821 23333333333322 24789999999998
Q ss_pred hhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecC-CchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhC
Q psy4493 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKP-AAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR 262 (323)
Q Consensus 184 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~ 262 (323)
+... .+.....+... .....+ .... .++..+.+ .++++||||++++.|+.+++.|++.
T Consensus 142 ~~~~----~~~~~~~~~~~-----------~~~~~~~~~~~----~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~L~~~ 200 (440)
T 1yks_A 142 GTSD----EFPHSNGEIED-----------VQTDIPSEPWN----TGHDWILA--DKRPTAWFLPSIRAANVMAASLRKA 200 (440)
T ss_dssp TCCC----SSCCCSSCEEE-----------EECCCCSSCCS----SSCHHHHH--CCSCEEEECSCHHHHHHHHHHHHHT
T ss_pred chhh----hhhhcCCCeeE-----------eeeccChHHHH----HHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHc
Confidence 7642 11111111110 000011 1111 12233333 4689999999999999999999999
Q ss_pred CCeEEeecCCCCCCc--------------ceeeecccccCCccEEEE-------------------ccCCCCHhHHHHHh
Q psy4493 263 GLRVSAYHAKLESNV--------------SIAFGLGIDKPNVRFVIH-------------------HCLSKSMENFYQVS 309 (323)
Q Consensus 263 ~~~v~~~h~~~~~~~--------------T~~~~~Gid~~~v~~Vi~-------------------~~~p~~~~~~~qr~ 309 (323)
++++..+||+.-... |+++++|+|+| +++||+ ++.|.+..+|+||+
T Consensus 201 ~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~ 279 (440)
T 1yks_A 201 GKSVVVLNRKTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRR 279 (440)
T ss_dssp TCCEEECCSSSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHH
T ss_pred CCCEEEecchhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhc
Confidence 999999999432222 99999999999 999996 88999999999999
Q ss_pred ccCCCC-CCCCCCC
Q psy4493 310 IAFGLG-KHSFRSR 322 (323)
Q Consensus 310 GR~gR~-g~~g~~~ 322 (323)
||+||. |++|.|+
T Consensus 280 GR~GR~g~~~g~~~ 293 (440)
T 1yks_A 280 GRIGRNPNRDGDSY 293 (440)
T ss_dssp TTSSCCTTCCCEEE
T ss_pred cccCCCCCCCceEE
Confidence 999997 6888875
No 46
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.97 E-value=2.7e-30 Score=238.64 Aligned_cols=243 Identities=12% Similarity=0.058 Sum_probs=150.7
Q ss_pred HHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHH-hcCCcEEEEccchh-------hhhhcCeeeec
Q psy4493 33 NIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIA-LLKKDAIIIMPTGK-------LLKKKKICLMT 104 (323)
Q Consensus 33 ~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~-~~~~~~lv~~pTgs-------~l~~~~i~l~~ 104 (323)
+.+..++++++.+|||+|||..+...+ +..+ ..+..+++++||.+ .+....+....
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~i----------------l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~~v~~~~ 79 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQI----------------IKDAIQQRLRTAVLAPTRVVAAEMAEALRGLPVRYQT 79 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHH----------------HHHHHHTTCCEEEEECSHHHHHHHHHHTTTSCEEECC
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHH----------------HHHHHhCCCcEEEECchHHHHHHHHHHhcCceEeEEe
Confidence 344567889999999999997633222 2112 25678999999998 33323333110
Q ss_pred ------cCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEE
Q psy4493 105 ------ESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGL 178 (323)
Q Consensus 105 ------~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~l 178 (323)
......+.++|.+.+.. .+.......++++|||||||++... .......+..+ ...++.++++|
T Consensus 80 ~~~~~~~t~~~~i~~~~~~~l~~------~l~~~~~l~~~~~iViDEaH~~~~~---~~~~~~~~~~~-~~~~~~~~il~ 149 (459)
T 2z83_A 80 SAVQREHQGNEIVDVMCHATLTH------RLMSPNRVPNYNLFVMDEAHFTDPA---SIAARGYIATK-VELGEAAAIFM 149 (459)
T ss_dssp --------CCCSEEEEEHHHHHH------HHHSCC-CCCCSEEEESSTTCCSHH---HHHHHHHHHHH-HHTTSCEEEEE
T ss_pred cccccCCCCCcEEEEEchHHHHH------HhhccccccCCcEEEEECCccCCch---hhHHHHHHHHH-hccCCccEEEE
Confidence 11122333444444321 2222234568999999999975210 01111112112 22358899999
Q ss_pred eecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHH
Q psy4493 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREE 258 (323)
Q Consensus 179 SAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~ 258 (323)
|||++.... .+.....+...... ..+.. ....+.+.+.+ .++++||||+|++.|+.+++.
T Consensus 150 SAT~~~~~~----~~~~~~~pi~~~~~-----------~~~~~---~~~~~~~~l~~--~~~~~LVF~~s~~~~~~l~~~ 209 (459)
T 2z83_A 150 TATPPGTTD----PFPDSNAPIHDLQD-----------EIPDR---AWSSGYEWITE--YAGKTVWFVASVKMGNEIAMC 209 (459)
T ss_dssp CSSCTTCCC----SSCCCSSCEEEEEC-----------CCCSS---CCSSCCHHHHH--CCSCEEEECSCHHHHHHHHHH
T ss_pred EcCCCcchh----hhccCCCCeEEecc-----------cCCcc---hhHHHHHHHHh--cCCCEEEEeCChHHHHHHHHH
Confidence 999987541 11111222211110 00100 01112233443 468999999999999999999
Q ss_pred HHhCCCeEEeecCCCCCCc--------------ceeeecccccCCccEEEE--------------------ccCCCCHhH
Q psy4493 259 LRNRGLRVSAYHAKLESNV--------------SIAFGLGIDKPNVRFVIH--------------------HCLSKSMEN 304 (323)
Q Consensus 259 L~~~~~~v~~~h~~~~~~~--------------T~~~~~Gid~~~v~~Vi~--------------------~~~p~~~~~ 304 (323)
|++.|+.+..+|++.-... |+++++|+|+|+ ++||+ ||.|.|..+
T Consensus 210 L~~~g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~ 288 (459)
T 2z83_A 210 LQRAGKKVIQLNRKSYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSAS 288 (459)
T ss_dssp HHHTTCCEEEESTTCCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHH
T ss_pred HHhcCCcEEecCHHHHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHH
Confidence 9999999999999733222 999999999999 99999 679999999
Q ss_pred HHHHhccCCCCCC-CCCCC
Q psy4493 305 FYQVSIAFGLGKH-SFRSR 322 (323)
Q Consensus 305 ~~qr~GR~gR~g~-~g~~~ 322 (323)
|+||+||+||.|+ .|.|+
T Consensus 289 ~~QR~GRaGR~g~~~G~~~ 307 (459)
T 2z83_A 289 AAQRRGRVGRNPNQVGDEY 307 (459)
T ss_dssp HHHHHTTSSCCTTCCCEEE
T ss_pred HHHhccccCCCCCCCCeEE
Confidence 9999999999997 88765
No 47
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.96 E-value=3e-29 Score=238.65 Aligned_cols=102 Identities=21% Similarity=0.176 Sum_probs=91.8
Q ss_pred chhHHHHHHHHHHHhh-cCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc----------------ceeeec
Q psy4493 221 AQKDCLDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGL 283 (323)
Q Consensus 221 ~~~~~~~~l~~~l~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~----------------T~~~~~ 283 (323)
...+|+..+.+.+... ..+.++||||+|+..++.+++.|.+.|+++..+||++.+.+ |++++|
T Consensus 422 ~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G~VtIATnmAgR 501 (853)
T 2fsf_A 422 TEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAAVTIATNMAGR 501 (853)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTTCEEEEESCCSS
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCCeEEEecccccC
Confidence 3567888888888643 36789999999999999999999999999999999976665 999999
Q ss_pred ccccCCc-------------------------------------cEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 284 GIDKPNV-------------------------------------RFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 284 Gid~~~v-------------------------------------~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+|++.. .+||+++.|.|...|.||+||+||.|++|.++
T Consensus 502 GtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~ 577 (853)
T 2fsf_A 502 GTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSR 577 (853)
T ss_dssp CSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEE
T ss_pred CcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEE
Confidence 9999973 69999999999999999999999999999876
No 48
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.96 E-value=2.8e-30 Score=245.36 Aligned_cols=254 Identities=17% Similarity=0.127 Sum_probs=163.4
Q ss_pred ChhHHHHHHHHhcCCCeEEEcCCCCCchHHHH-HHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------hhh
Q psy4493 25 RPNQLAAINIALLKKDAIIIMPTDYPWSDRVR-SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------LLK 96 (323)
Q Consensus 25 ~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~-~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------~l~ 96 (323)
.|.|..+++.+..++++++.+|||+|||..+. .++... ...+..+++++||.+ .+.
T Consensus 173 lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l----------------~~~~~~vLvl~PtreLa~Qi~~~l~ 236 (618)
T 2whx_A 173 EPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREA----------------LKRRLRTLILAPTRVVAAEMEEALR 236 (618)
T ss_dssp CCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHH----------------HHTTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHH----------------HhCCCeEEEEcChHHHHHHHHHHhc
Confidence 44444467788889999999999999997643 233220 124568999999999 222
Q ss_pred hcCeeeeccCCCeeEEEEcccccccc---hhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCC
Q psy4493 97 KKKICLMTESSSLKLLYVSPEKLAKS---KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173 (323)
Q Consensus 97 ~~~i~l~~~~~~~~vii~Tp~~l~~~---~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~ 173 (323)
...+...... . -.++||+++.+. ..+...+.......+++++|+||||++.. .+...+..+...... ++.
T Consensus 237 ~~~v~~~~~~--l-~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~---~~~~~~~~i~~~l~~-~~~ 309 (618)
T 2whx_A 237 GLPIRYQTPA--V-KSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDP---CSVAARGYISTRVEM-GEA 309 (618)
T ss_dssp TSCEEECCTT--S-SCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSH---HHHHHHHHHHHHHHH-TSC
T ss_pred CCceeEeccc--c-eeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCc---cHHHHHHHHHHHhcc-cCc
Confidence 2223211110 0 124566665531 11111222222357899999999999832 244444443222211 578
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHH
Q psy4493 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECE 253 (323)
Q Consensus 174 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~ 253 (323)
|+++||||++.... .+.. .++..+......+ .. ....+++.+.+ .++++||||+|++.|+
T Consensus 310 q~il~SAT~~~~~~----~~~~-~~~~~~~v~~~~~----------~~---~~~~ll~~l~~--~~~~~LVF~~s~~~a~ 369 (618)
T 2whx_A 310 AAIFMTATPPGSTD----PFPQ-SNSPIEDIEREIP----------ER---SWNTGFDWITD--YQGKTVWFVPSIKAGN 369 (618)
T ss_dssp EEEEECSSCTTCCC----SSCC-CSSCEEEEECCCC----------SS---CCSSSCHHHHH--CCSCEEEECSSHHHHH
T ss_pred cEEEEECCCchhhh----hhhc-cCCceeeecccCC----------HH---HHHHHHHHHHh--CCCCEEEEECChhHHH
Confidence 99999999987642 1221 1222222111111 00 11123333433 4679999999999999
Q ss_pred HHHHHHHhCCCeEEeecCCCCCCc--------------ceeeecccccCCccEE--------------------EEccCC
Q psy4493 254 DLREELRNRGLRVSAYHAKLESNV--------------SIAFGLGIDKPNVRFV--------------------IHHCLS 299 (323)
Q Consensus 254 ~l~~~L~~~~~~v~~~h~~~~~~~--------------T~~~~~Gid~~~v~~V--------------------i~~~~p 299 (323)
.+++.|++.++++..+||+.-.+. |+++++|+|+| +++| |+++.|
T Consensus 370 ~l~~~L~~~g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P 448 (618)
T 2whx_A 370 DIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIP 448 (618)
T ss_dssp HHHHHHHHTTCCEEEECTTTHHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEE
T ss_pred HHHHHHHHcCCcEEEEChHHHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEccccc
Confidence 999999999999999998622111 99999999997 9988 777889
Q ss_pred CCHhHHHHHhccCCCCCC-CCCCC
Q psy4493 300 KSMENFYQVSIAFGLGKH-SFRSR 322 (323)
Q Consensus 300 ~~~~~~~qr~GR~gR~g~-~g~~~ 322 (323)
.+..+|+||+||+||.|. .|.|+
T Consensus 449 ~s~~~yiQR~GRaGR~g~~~G~ai 472 (618)
T 2whx_A 449 VTPASAAQRRGRIGRNPAQEDDQY 472 (618)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEE
T ss_pred CCHHHHHHhccccCCCCCCCCeEE
Confidence 999999999999999964 78765
No 49
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.96 E-value=7.6e-30 Score=243.98 Aligned_cols=257 Identities=11% Similarity=0.059 Sum_probs=163.5
Q ss_pred CCChhHH-----HHHHHHh------cCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccc
Q psy4493 23 DFRPNQL-----AAINIAL------LKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT 91 (323)
Q Consensus 23 ~~~~~Q~-----~~~~~~~------~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pT 91 (323)
.+++.|. .++..++ .++++++.+|||+|||..+...+.. .+ ...+..+++++||
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~------------~l---~~~~~~~lilaPT 279 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIK------------DA---IQKRLRTAVLAPT 279 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHH------------HH---HHTTCCEEEEESS
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH------------HH---HhCCCcEEEEccH
Confidence 5667777 7887777 7999999999999999774333221 00 1245689999999
Q ss_pred hh-------hhhhcCeeeeccCCCeeEEEEcccccccch---hHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHH
Q psy4493 92 GK-------LLKKKKICLMTESSSLKLLYVSPEKLAKSK---SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQ 161 (323)
Q Consensus 92 gs-------~l~~~~i~l~~~~~~~~vii~Tp~~l~~~~---~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~ 161 (323)
.. .+...++.... .... .++||+++++.- .+...+.......+++++|+||||++.. .+.....
T Consensus 280 r~La~Q~~~~l~~~~i~~~~--~~l~-~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~---~~~~~~~ 353 (673)
T 2wv9_A 280 RVVAAEMAEALRGLPVRYLT--PAVQ-REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDP---ASIAARG 353 (673)
T ss_dssp HHHHHHHHHHTTTSCCEECC--C----CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCH---HHHHHHH
T ss_pred HHHHHHHHHHHhcCCeeeec--cccc-ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCc---cHHHHHH
Confidence 98 33344443111 1100 278998886421 1111111112357899999999999822 1122222
Q ss_pred hHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecCCchhHHHHHHHHHHHhhcCCCc
Q psy4493 162 YLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQS 241 (323)
Q Consensus 162 ~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 241 (323)
.+..+.. .++.++++||||+++... .+.....+ +.......+.. ....++..+.+ .+++
T Consensus 354 ~l~~~~~-~~~~~vl~~SAT~~~~i~----~~~~~~~~-----------i~~v~~~~~~~---~~~~~l~~l~~--~~~~ 412 (673)
T 2wv9_A 354 YIATRVE-AGEAAAIFMTATPPGTSD----PFPDTNSP-----------VHDVSSEIPDR---AWSSGFEWITD--YAGK 412 (673)
T ss_dssp HHHHHHH-TTSCEEEEECSSCTTCCC----SSCCCSSC-----------EEEEECCCCSS---CCSSCCHHHHS--CCSC
T ss_pred HHHHhcc-ccCCcEEEEcCCCChhhh----hhcccCCc-----------eEEEeeecCHH---HHHHHHHHHHh--CCCC
Confidence 2222221 247899999999987642 11111111 11000001110 11122333433 5789
Q ss_pred EEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc--------------ceeeecccccCCccEEEE------------
Q psy4493 242 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------SIAFGLGIDKPNVRFVIH------------ 295 (323)
Q Consensus 242 ~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~--------------T~~~~~Gid~~~v~~Vi~------------ 295 (323)
+||||+++++|+.+++.|++.++++..+||+.-... |+++++|+|+| +++||+
T Consensus 413 ~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~d 491 (673)
T 2wv9_A 413 TVWFVASVKMSNEIAQCLQRAGKRVIQLNRKSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDE 491 (673)
T ss_dssp EEEECSSHHHHHHHHHHHHTTTCCEEEECSSSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECS
T ss_pred EEEEECCHHHHHHHHHHHHhCCCeEEEeChHHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeec
Confidence 999999999999999999999999999999511110 99999999999 999998
Q ss_pred --------ccCCCCHhHHHHHhccCCCC-CCCCCCC
Q psy4493 296 --------HCLSKSMENFYQVSIAFGLG-KHSFRSR 322 (323)
Q Consensus 296 --------~~~p~~~~~~~qr~GR~gR~-g~~g~~~ 322 (323)
||+|.+..+|+||+||+||. |+.|.|+
T Consensus 492 a~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai 527 (673)
T 2wv9_A 492 GEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEY 527 (673)
T ss_dssp TTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEE
T ss_pred ccccceecccCCCCHHHHHHHhhccCCCCCCCCEEE
Confidence 56899999999999999999 7888775
No 50
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.96 E-value=1.7e-28 Score=233.96 Aligned_cols=287 Identities=15% Similarity=0.049 Sum_probs=192.7
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEcc
Q psy4493 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMP 90 (323)
Q Consensus 11 ~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~p 90 (323)
+++..++.+|. .+.+.|..++.....|+ +..++||.|||..+...+ +-..+.|+.++|++|
T Consensus 100 vrEa~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~----------------~l~aL~g~~v~VvTp 160 (922)
T 1nkt_A 100 AREAAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPA----------------YLNALAGNGVHIVTV 160 (922)
T ss_dssp HHHHHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHH----------------HHHHTTTSCEEEEES
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHH----------------HHHHHhCCCeEEEeC
Confidence 34566667787 77899999999999888 889999999995422211 111346788999999
Q ss_pred chh-----------hhhhcCeeee-----------ccCCCeeEEEEccccc-ccchhHHHHHHH-------HHhhCCcce
Q psy4493 91 TGK-----------LLKKKKICLM-----------TESSSLKLLYVSPEKL-AKSKSFMTKLQK-------MYKAGCLAR 140 (323)
Q Consensus 91 Tgs-----------~l~~~~i~l~-----------~~~~~~~vii~Tp~~l-~~~~~~~~~l~~-------~~~~~~v~~ 140 (323)
|.. .....|+... ...-.++|+|+||++| .+ .++. ......+.+
T Consensus 161 TreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfD------yLrD~m~~~~~~l~lr~l~~ 234 (922)
T 1nkt_A 161 NDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAYNADITYGTNNEFGFD------YLRDNMAHSLDDLVQRGHHY 234 (922)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHH------HHHHTTCSSGGGCCCCCCCE
T ss_pred CHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHH------HHHhhhhccHhhhccCCCCE
Confidence 998 2223455520 1112479999999998 32 2332 134458899
Q ss_pred EEEecccccc-ccCC----------CchHHHHhHHHHHhhCC----------CCCEE-----------------EEeecC
Q psy4493 141 IAIDEVHCCS-SWGH----------DFRPDYQYLSILKTMFP----------DVPIL-----------------GLTATA 182 (323)
Q Consensus 141 vVvDEah~~~-~~~~----------~~r~~~~~l~~l~~~~~----------~~~~i-----------------~lSAT~ 182 (323)
+||||||.++ +.+. ....-|..+..+...++ +.+++ ++|||.
T Consensus 235 lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~ 314 (922)
T 1nkt_A 235 AIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAAN 314 (922)
T ss_dssp EEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTT
T ss_pred EEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcc
Confidence 9999999987 3221 01123344444444443 34566 778886
Q ss_pred Chh---HHHHHHH--HhCCC------Cc----------------------------------------------------
Q psy4493 183 TTK---VMLDVQK--MLQIE------DC---------------------------------------------------- 199 (323)
Q Consensus 183 ~~~---~~~~i~~--~l~~~------~~---------------------------------------------------- 199 (323)
+.- +...+.. .+.-. +.
T Consensus 315 ~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~ 394 (922)
T 1nkt_A 315 SPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRL 394 (922)
T ss_dssp CCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHh
Confidence 641 1111111 11100 00
Q ss_pred ------------------------EEEecCCCCCCceeEEE-ecCCchhHHHHHHHHHHHhh-cCCCcEEEEeCChhHHH
Q psy4493 200 ------------------------VVIKAPFNRPNLFYEVR-IKPAAQKDCLDELADLMSRR-FRNQSGIIYTTSIKECE 253 (323)
Q Consensus 200 ------------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~-~~~~~~iVF~~s~~~~~ 253 (323)
.++..+.++|....... .......+|+..+.+.+... ..++++||||+|++.++
T Consensus 395 Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE 474 (922)
T 1nkt_A 395 YDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSE 474 (922)
T ss_dssp SSEEEEEESCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHH
T ss_pred hhhhhccccCchhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHH
Confidence 01111222222221100 00123567888888887643 36789999999999999
Q ss_pred HHHHHHHhCCCeEEeecCCCCCCc----------------ceeeecccccCCc---------------------------
Q psy4493 254 DLREELRNRGLRVSAYHAKLESNV----------------SIAFGLGIDKPNV--------------------------- 290 (323)
Q Consensus 254 ~l~~~L~~~~~~v~~~h~~~~~~~----------------T~~~~~Gid~~~v--------------------------- 290 (323)
.+++.|.+.|+++..+||++.+.+ |++++||+|++.+
T Consensus 475 ~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (922)
T 1nkt_A 475 YLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRGGVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEA 554 (922)
T ss_dssp HHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTTCEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHH
T ss_pred HHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCCeEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHH
Confidence 999999999999999999976655 9999999999975
Q ss_pred -------------------------cEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 291 -------------------------RFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 291 -------------------------~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
.+||+++.|.|...|.||+||+||.|.+|.++
T Consensus 555 ~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~ 611 (922)
T 1nkt_A 555 AWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESR 611 (922)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEE
T ss_pred HHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEE
Confidence 59999999999999999999999999999876
No 51
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.96 E-value=2.9e-28 Score=242.84 Aligned_cols=277 Identities=16% Similarity=0.106 Sum_probs=186.8
Q ss_pred CCCChhHHHHHHHHhcC--CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC--CcEEEEccchh----
Q psy4493 22 TDFRPNQLAAINIALLK--KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK--KDAIIIMPTGK---- 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~--~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~--~~~lv~~pTgs---- 93 (323)
..++|+|..++..++.. ...++..+||+|||......+... +..+ +.+++++|+ +
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l----------------~~~g~~~rvLIVvP~-sLl~Q 214 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQ----------------LLSGAAERVLIIVPE-TLQHQ 214 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHH----------------HHTSSCCCEEEECCT-TTHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHH----------------HHhCCCCeEEEEeCH-HHHHH
Confidence 56899999999887763 357778899999997766555431 2234 379999999 6
Q ss_pred ---hh-hhcCee--e-------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCC
Q psy4493 94 ---LL-KKKKIC--L-------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154 (323)
Q Consensus 94 ---~l-~~~~i~--l-------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~ 154 (323)
.+ ...+.+ + .......+|+|+|++.+.........+ ...++++|||||||++..++.
T Consensus 215 w~~E~~~~f~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l----~~~~~dlVIvDEAH~~kn~~~ 290 (968)
T 3dmq_A 215 WLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHL----CEAEWDLLVVDEAHHLVWSED 290 (968)
T ss_dssp HHHHHHHHSCCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHH----HTSCCCEEEECCSSCCCCBTT
T ss_pred HHHHHHHHhCCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHh----hhcCCCEEEehhhHhhcCCCC
Confidence 22 233443 1 133456799999999996533222222 235899999999999976543
Q ss_pred CchHHHHhHHHHHhhCCCCCEEEEeecCChhHHH---HHHHHhCCC----------------------------------
Q psy4493 155 DFRPDYQYLSILKTMFPDVPILGLTATATTKVML---DVQKMLQIE---------------------------------- 197 (323)
Q Consensus 155 ~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~---~i~~~l~~~---------------------------------- 197 (323)
.....+..+..+.. ....+++||||+...... .+..++...
T Consensus 291 ~~s~~~~~l~~L~~--~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~ 368 (968)
T 3dmq_A 291 APSREYQAIEQLAE--HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSND 368 (968)
T ss_dssp BCCHHHHHHHHHHT--TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGG
T ss_pred cchHHHHHHHHHhh--cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHH
Confidence 33333444444432 245799999998531111 011111000
Q ss_pred ---------------------------------------------CcEEEecCC----CCCCceeEEEe-----------
Q psy4493 198 ---------------------------------------------DCVVIKAPF----NRPNLFYEVRI----------- 217 (323)
Q Consensus 198 ---------------------------------------------~~~~~~~~~----~~~~~~~~~~~----------- 217 (323)
....+.... .-+...+....
T Consensus 369 ~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~ 448 (968)
T 3dmq_A 369 ELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAI 448 (968)
T ss_dssp GTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHH
T ss_pred HHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHH
Confidence 000000000 00000000000
Q ss_pred ----------------------------------cCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHh-C
Q psy4493 218 ----------------------------------KPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRN-R 262 (323)
Q Consensus 218 ----------------------------------~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~-~ 262 (323)
.......|...+.+++.. ..+.++||||+++..++.+++.|.. .
T Consensus 449 ~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~ 527 (968)
T 3dmq_A 449 KVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLRERE 527 (968)
T ss_dssp HHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTT
T ss_pred HHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHc
Confidence 011123467778888874 4788999999999999999999995 5
Q ss_pred CCeEEeecCCCCCCc--------------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 263 GLRVSAYHAKLESNV--------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 263 ~~~v~~~h~~~~~~~--------------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++..+||++++.+ |+++++|+|+|++++||++|+|+++..|.||+||+||.|+.|.+.
T Consensus 528 g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~ 607 (968)
T 3dmq_A 528 GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQ 607 (968)
T ss_dssp CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCE
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEE
Confidence 999999999999987 999999999999999999999999999999999999999998654
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.96 E-value=7.7e-29 Score=227.11 Aligned_cols=242 Identities=14% Similarity=0.107 Sum_probs=148.4
Q ss_pred cCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------hhhhcCeeeeccCCCe
Q psy4493 37 LKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------LLKKKKICLMTESSSL 109 (323)
Q Consensus 37 ~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------~l~~~~i~l~~~~~~~ 109 (323)
+++++++.+|||+|||..+...+.. ..+..+..+++++||.. .+....+.+.. +..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~---------------~~~~~g~~~lvl~Pt~~La~Q~~~~~~~~~v~~~~--~~~ 63 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVR---------------EAVKKRLRTVILAPTRVVASEMYEALRGEPIRYMT--PAV 63 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHH---------------HHHHTTCCEEEEESSHHHHHHHHHHTTTSCEEEC------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH---------------HHHhCCCCEEEECcHHHHHHHHHHHhCCCeEEEEe--cCc
Confidence 3678999999999999775332211 11235678999999998 22222333210 000
Q ss_pred eEEEEcccccccc---hhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhH
Q psy4493 110 KLLYVSPEKLAKS---KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186 (323)
Q Consensus 110 ~vii~Tp~~l~~~---~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 186 (323)
. .+.||+.++.. ..+...+.......+++++|+||||++..+ +......+..+. ..++.++++||||+++..
T Consensus 64 ~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~---~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~~ 138 (431)
T 2v6i_A 64 Q-SERTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPA---SVAARGYIETRV-SMGDAGAIFMTATPPGTT 138 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHH---HHHHHHHHHHHH-HTTSCEEEEEESSCTTCC
T ss_pred c-ccCCCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCcc---HHHHHHHHHHHh-hCCCCcEEEEeCCCCcch
Confidence 0 13344333320 011112222223568999999999987421 222222232222 235889999999999743
Q ss_pred HHHHHHHhCCCCcEEEecCCCCCCceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeE
Q psy4493 187 MLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRV 266 (323)
Q Consensus 187 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v 266 (323)
. . +. ...+++.......+. .....+.+.+.+ .++++||||+++++|+.+++.|++.++++
T Consensus 139 ~----~---~~--------~~~~~i~~~~~~~~~---~~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v 198 (431)
T 2v6i_A 139 E----A---FP--------PSNSPIIDEETRIPD---KAWNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKV 198 (431)
T ss_dssp C----S---SC--------CCSSCCEEEECCCCS---SCCSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCE
T ss_pred h----h---hc--------CCCCceeeccccCCH---HHHHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeE
Confidence 1 1 11 011111111001111 111233444544 46799999999999999999999999999
Q ss_pred EeecCCCCCCc--------------ceeeecccccCCccE-----------------EEEccCCCCHhHHHHHhccCCCC
Q psy4493 267 SAYHAKLESNV--------------SIAFGLGIDKPNVRF-----------------VIHHCLSKSMENFYQVSIAFGLG 315 (323)
Q Consensus 267 ~~~h~~~~~~~--------------T~~~~~Gid~~~v~~-----------------Vi~~~~p~~~~~~~qr~GR~gR~ 315 (323)
..+||++..+. |+++++|+|+| +.. ||+++.|.+..+|+||+||+||.
T Consensus 199 ~~lhg~~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~ 277 (431)
T 2v6i_A 199 LYLNRKTFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRN 277 (431)
T ss_dssp EEESTTTHHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCC
T ss_pred EEeCCccHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCC
Confidence 99999843222 99999999999 655 67889999999999999999999
Q ss_pred CCCCCC
Q psy4493 316 KHSFRS 321 (323)
Q Consensus 316 g~~g~~ 321 (323)
|..+.|
T Consensus 278 g~~~~~ 283 (431)
T 2v6i_A 278 PEKLGD 283 (431)
T ss_dssp TTCCCC
T ss_pred CCCCCe
Confidence 965544
No 53
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.95 E-value=4.8e-27 Score=219.78 Aligned_cols=271 Identities=13% Similarity=0.065 Sum_probs=174.8
Q ss_pred CCCChhHHHHHHHHh----cCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh----
Q psy4493 22 TDFRPNQLAAINIAL----LKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK---- 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~----~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs---- 93 (323)
..+||+|.++++... .++..++..+||.|||......+... ......+.++|++|+.-
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~--------------~~~~~~~~~LIv~P~~l~~qw 101 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDA--------------KKENELTPSLVICPLSVLKNW 101 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHH--------------HHTTCCSSEEEEECSTTHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHH--------------HhcCCCCCEEEEccHHHHHHH
Confidence 468999999987653 46788899999999997765555431 01112367999999654
Q ss_pred --hhhhc--Cee--e------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHH
Q psy4493 94 --LLKKK--KIC--L------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQ 161 (323)
Q Consensus 94 --~l~~~--~i~--l------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~ 161 (323)
.+.+. +.. + ......++|+|+|++++..... .....+++||+||||++...+ ...+
T Consensus 102 ~~e~~~~~~~~~v~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~--------l~~~~~~~vIvDEaH~~kn~~---~~~~- 169 (500)
T 1z63_A 102 EEELSKFAPHLRFAVFHEDRSKIKLEDYDIILTTYAVLLRDTR--------LKEVEWKYIVIDEAQNIKNPQ---TKIF- 169 (500)
T ss_dssp HHHHHHHCTTSCEEECSSSTTSCCGGGSSEEEEEHHHHTTCHH--------HHTCCEEEEEEETGGGGSCTT---SHHH-
T ss_pred HHHHHHHCCCceEEEEecCchhccccCCcEEEeeHHHHhccch--------hcCCCcCEEEEeCccccCCHh---HHHH-
Confidence 22222 111 1 1123457899999999975311 223478999999999997532 1111
Q ss_pred hHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCC---C-------------------------------CcEEEecC--
Q psy4493 162 YLSILKTMFPDVPILGLTATATTKVMLDVQKMLQI---E-------------------------------DCVVIKAP-- 205 (323)
Q Consensus 162 ~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~---~-------------------------------~~~~~~~~-- 205 (323)
..+. .++....++||||+..+...++...+.+ . .+..+...
T Consensus 170 --~~l~-~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~ 246 (500)
T 1z63_A 170 --KAVK-ELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKY 246 (500)
T ss_dssp --HHHH-TSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTT
T ss_pred --HHHH-hhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeeccc
Confidence 1232 2345678999999965433332221110 0 11111111
Q ss_pred -----CCCCCceeEEEecCC-------------------------------------------------------chhHH
Q psy4493 206 -----FNRPNLFYEVRIKPA-------------------------------------------------------AQKDC 225 (323)
Q Consensus 206 -----~~~~~~~~~~~~~~~-------------------------------------------------------~~~~~ 225 (323)
...|..........- ....|
T Consensus 247 ~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K 326 (500)
T 1z63_A 247 DKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGK 326 (500)
T ss_dssp CHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHH
T ss_pred ccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchh
Confidence 112222211111110 01234
Q ss_pred HHHHHHHHHhh-cCCCcEEEEeCChhHHHHHHHHHHhC-CCeEEeecCCCCCCc--------------------ceeeec
Q psy4493 226 LDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESNV--------------------SIAFGL 283 (323)
Q Consensus 226 ~~~l~~~l~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~-~~~v~~~h~~~~~~~--------------------T~~~~~ 283 (323)
+..+.+++.+. .++.++||||+++..++.+++.|.+. |+.+..+||+++..+ |+++++
T Consensus 327 ~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~ 406 (500)
T 1z63_A 327 MIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGF 406 (500)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-C
T ss_pred HHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccC
Confidence 44455555432 26789999999999999999999885 999999999998765 899999
Q ss_pred ccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCC
Q psy4493 284 GIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRS 321 (323)
Q Consensus 284 Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~ 321 (323)
|+|+++++.||++|+|+++..|.|++||++|.|+...+
T Consensus 407 Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v 444 (500)
T 1z63_A 407 GINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNV 444 (500)
T ss_dssp CCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCE
T ss_pred CCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCee
Confidence 99999999999999999999999999999999987654
No 54
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.95 E-value=5.5e-28 Score=230.61 Aligned_cols=230 Identities=14% Similarity=0.092 Sum_probs=155.9
Q ss_pred HHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------hhhhcCeeeecc
Q psy4493 33 NIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------LLKKKKICLMTE 105 (323)
Q Consensus 33 ~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------~l~~~~i~l~~~ 105 (323)
...+.++++++.+|||+|||..+ +..+...+..++++||.. .+.+.|+.+...
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~a--------------------l~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~ll 209 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYHA--------------------IQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLV 209 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHHH--------------------HHHHHHSSSEEEEESSHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHhcCCCEEEEEcCCCCCHHHHH--------------------HHHHHhcCCeEEEeCHHHHHHHHHHHHHhcCCcEEEE
Confidence 34467889999999999999532 223334456799999999 555666663222
Q ss_pred CC-----------CeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhC-CCC
Q psy4493 106 SS-----------SLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF-PDV 173 (323)
Q Consensus 106 ~~-----------~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~-~~~ 173 (323)
.+ ..+++++|++.+.. ...++++||||||++.+.+ +...+..+ +.... ++.
T Consensus 210 tG~~~~iv~TpGr~~~il~~T~e~~~l-------------~~~v~lvVIDEaH~l~d~~--~g~~~~~~--l~~l~~~~i 272 (677)
T 3rc3_A 210 TGEERVTVQPNGKQASHVSCTVEMCSV-------------TTPYEVAVIDEIQMIRDPA--RGWAWTRA--LLGLCAEEV 272 (677)
T ss_dssp CSSCEECCSTTCCCCSEEEEEGGGCCS-------------SSCEEEEEECSGGGGGCTT--THHHHHHH--HHHCCEEEE
T ss_pred ECCeeEEecCCCcccceeEecHhHhhh-------------cccCCEEEEecceecCCcc--chHHHHHH--HHccCccce
Confidence 22 24566666655531 2478999999999997643 44444322 44333 367
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHH
Q psy4493 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECE 253 (323)
Q Consensus 174 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~ 253 (323)
+++++|||.+ ....+....+.. ..+.......... ..... + ..+.. .....+|||+|+++|+
T Consensus 273 ~il~~SAT~~--~i~~l~~~~~~~--~~v~~~~r~~~l~--~~~~~------l----~~l~~--~~~g~iIf~~s~~~ie 334 (677)
T 3rc3_A 273 HLCGEPAAID--LVMELMYTTGEE--VEVRDYKRLTPIS--VLDHA------L----ESLDN--LRPGDCIVCFSKNDIY 334 (677)
T ss_dssp EEEECGGGHH--HHHHHHHHHTCC--EEEEECCCSSCEE--ECSSC------C----CSGGG--CCTTEEEECSSHHHHH
T ss_pred EEEeccchHH--HHHHHHHhcCCc--eEEEEeeecchHH--HHHHH------H----HHHHh--cCCCCEEEEcCHHHHH
Confidence 8999999943 234444443322 2221111111111 11000 0 01111 1345589999999999
Q ss_pred HHHHHHHhCCCeEEeecCCCCCCc--------------------ceeeecccccCCccEEEEccC--------------C
Q psy4493 254 DLREELRNRGLRVSAYHAKLESNV--------------------SIAFGLGIDKPNVRFVIHHCL--------------S 299 (323)
Q Consensus 254 ~l~~~L~~~~~~v~~~h~~~~~~~--------------------T~~~~~Gid~~~v~~Vi~~~~--------------p 299 (323)
.+++.|.+.++.+..+||+|++++ |+++++|+|+ ++++||++|. |
T Consensus 335 ~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p 413 (677)
T 3rc3_A 335 SVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEP 413 (677)
T ss_dssp HHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CB
T ss_pred HHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCcccccc
Confidence 999999999999999999999874 9999999999 7999999999 7
Q ss_pred CCHhHHHHHhccCCCCCCC
Q psy4493 300 KSMENFYQVSIAFGLGKHS 318 (323)
Q Consensus 300 ~~~~~~~qr~GR~gR~g~~ 318 (323)
.+..+|+||+||+||.|+.
T Consensus 414 ~s~~~~~QR~GRAGR~g~~ 432 (677)
T 3rc3_A 414 ITTSQALQIAGRAGRFSSR 432 (677)
T ss_dssp CCHHHHHHHHTTBTCTTSS
T ss_pred CCHHHHHHHhcCCCCCCCC
Confidence 7999999999999999975
No 55
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.9e-24 Score=212.17 Aligned_cols=272 Identities=14% Similarity=0.099 Sum_probs=176.9
Q ss_pred CCCChhHHHHHHHHh----cCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh----
Q psy4493 22 TDFRPNQLAAINIAL----LKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK---- 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~----~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs---- 93 (323)
..+||+|.++++... .++..++..++|.|||...+..+... +..-...+.+||++|+..
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l-------------~~~~~~~~~~LIV~P~sll~qW 301 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWL-------------IFARRQNGPHIIVVPLSTMPAW 301 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHH-------------HHHHSCCSCEEEECCTTTHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHH-------------HHhcCCCCCEEEEECchHHHHH
Confidence 478999999997554 67889999999999997766655431 111123456899999655
Q ss_pred --hhhhc--Cee--e-----------------------eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEe
Q psy4493 94 --LLKKK--KIC--L-----------------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAID 144 (323)
Q Consensus 94 --~l~~~--~i~--l-----------------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvD 144 (323)
.+... +.. + ......++|+|+|++.+... ...+ ...++++||||
T Consensus 302 ~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~---~~~l----~~~~w~~vIvD 374 (800)
T 3mwy_W 302 LDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKD---RAEL----GSIKWQFMAVD 374 (800)
T ss_dssp HHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHT---HHHH----HTSEEEEEEET
T ss_pred HHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhh---HHHH----hcCCcceeehh
Confidence 22221 111 1 02345788999999999642 1122 22378999999
Q ss_pred ccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCC----------------------------
Q psy4493 145 EVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQI---------------------------- 196 (323)
Q Consensus 145 Eah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~---------------------------- 196 (323)
|||++-.... . +......++....++||||+-.+...++...+.+
T Consensus 375 EaH~lkn~~s---~----~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L 447 (800)
T 3mwy_W 375 EAHRLKNAES---S----LYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDL 447 (800)
T ss_dssp TGGGGCCSSS---H----HHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHH
T ss_pred hhhhhcCchh---H----HHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHH
Confidence 9999964221 1 1112233345568999999853322222222111
Q ss_pred ---CCcEEEec-----CCCCCCceeEEEecCCc-----------------------------------------------
Q psy4493 197 ---EDCVVIKA-----PFNRPNLFYEVRIKPAA----------------------------------------------- 221 (323)
Q Consensus 197 ---~~~~~~~~-----~~~~~~~~~~~~~~~~~----------------------------------------------- 221 (323)
-.+.++.. ....|.....+....-.
T Consensus 448 ~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~ 527 (800)
T 3mwy_W 448 HRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFD 527 (800)
T ss_dssp HHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSS
T ss_pred HHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhc
Confidence 00111111 00111111111111000
Q ss_pred --------------------------hhHHHHHHHHHHHhh-cCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCC
Q psy4493 222 --------------------------QKDCLDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 274 (323)
Q Consensus 222 --------------------------~~~~~~~l~~~l~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~ 274 (323)
...|+..|.+++... ..+.++||||+.+..+..+...|...|+.+..+||+++
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~ 607 (800)
T 3mwy_W 528 NAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVP 607 (800)
T ss_dssp SHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSC
T ss_pred chHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 112444455555432 25689999999999999999999999999999999998
Q ss_pred CCc---------------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCC
Q psy4493 275 SNV---------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFR 320 (323)
Q Consensus 275 ~~~---------------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~ 320 (323)
..+ |.++++|+|++.+++||+||+|+|+..++|++||+.|.|+...
T Consensus 608 ~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~ 674 (800)
T 3mwy_W 608 SAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNH 674 (800)
T ss_dssp HHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSC
T ss_pred HHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCce
Confidence 776 8999999999999999999999999999999999999998754
No 56
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.90 E-value=2.2e-23 Score=199.96 Aligned_cols=84 Identities=11% Similarity=-0.009 Sum_probs=79.0
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc---------------------ceeeecccccCCccEEEEc
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---------------------SIAFGLGIDKPNVRFVIHH 296 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~---------------------T~~~~~Gid~~~v~~Vi~~ 296 (323)
.+.++||||+.+..++.++..|...|+.+..+||+++..+ |+++++|+|++++++||+|
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~ 494 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMF 494 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEEC
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEE
Confidence 5789999999999999999999999999999999998776 8999999999999999999
Q ss_pred cCCCCHhHHHHHhccCCCCCCCCCC
Q psy4493 297 CLSKSMENFYQVSIAFGLGKHSFRS 321 (323)
Q Consensus 297 ~~p~~~~~~~qr~GR~gR~g~~g~~ 321 (323)
|+|+++..+.|++||++|.|+...+
T Consensus 495 d~~wnp~~~~Qa~gR~~R~Gq~~~v 519 (644)
T 1z3i_X 495 DPDWNPANDEQAMARVWRDGQKKTC 519 (644)
T ss_dssp SCCSSHHHHHHHHTTSSSTTCCSCE
T ss_pred CCCCCccHHHHHHHhhhhcCCCCce
Confidence 9999999999999999999987643
No 57
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.90 E-value=2.2e-22 Score=188.36 Aligned_cols=145 Identities=21% Similarity=0.220 Sum_probs=118.0
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCCCceeEEE-ecCCchhHHHHHHHHHHHhh-cCCCcEEEEeCChhH
Q psy4493 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVR-IKPAAQKDCLDELADLMSRR-FRNQSGIIYTTSIKE 251 (323)
Q Consensus 174 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~-~~~~~~iVF~~s~~~ 251 (323)
++.+||+|+..+. +.+.+.+++. ++..+.++|....... ..-....+|+..+.+.+... ..++|+||||+|++.
T Consensus 411 kL~GMTGTa~te~-~Ef~~iY~l~---vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~ 486 (822)
T 3jux_A 411 KLAGMTGTAKTEE-SEFVQVYGME---VVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEK 486 (822)
T ss_dssp EEEEEESSCGGGH-HHHHHHSCCC---EEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHH
T ss_pred HHeEECCCCchHH-HHHHHHhCCe---EEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHH
Confidence 4789999998754 6677887765 4445666665543321 11234567888988888753 367899999999999
Q ss_pred HHHHHHHHHhCCCeEEeecCCCCCCc----------------ceeeecccccC--------CccEEEEccCCCCHhHHHH
Q psy4493 252 CEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLGIDKP--------NVRFVIHHCLSKSMENFYQ 307 (323)
Q Consensus 252 ~~~l~~~L~~~~~~v~~~h~~~~~~~----------------T~~~~~Gid~~--------~v~~Vi~~~~p~~~~~~~q 307 (323)
|+.++..|.+.|+++..+||+..+.+ |++++||+|++ ++.+||++++|.+...|.|
T Consensus 487 sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~q 566 (822)
T 3jux_A 487 SELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKGMVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQ 566 (822)
T ss_dssp HHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTTCEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCCeEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHH
Confidence 99999999999999999999965555 99999999997 5569999999999999999
Q ss_pred HhccCCCCCCCCCCC
Q psy4493 308 VSIAFGLGKHSFRSR 322 (323)
Q Consensus 308 r~GR~gR~g~~g~~~ 322 (323)
|+||+||.|.+|.++
T Consensus 567 riGRTGRqG~~G~a~ 581 (822)
T 3jux_A 567 LRGRAGRQGDPGESI 581 (822)
T ss_dssp HHTTSSCSSCCCEEE
T ss_pred hhCccccCCCCeeEE
Confidence 999999999999875
No 58
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.88 E-value=3.6e-22 Score=198.15 Aligned_cols=266 Identities=12% Similarity=0.061 Sum_probs=164.3
Q ss_pred CCCChhHHHHHHHHhc--------------CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEE
Q psy4493 22 TDFRPNQLAAINIALL--------------KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAII 87 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~--------------~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv 87 (323)
..+|++|..+++.++. +++.++.++||+|||.....++... ...-....+|+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll--------------~~~~~~~rvLv 335 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLA--------------TELDFIDKVFF 335 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHH--------------TTCTTCCEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHH--------------HhcCCCceEEE
Confidence 3589999999998764 3679999999999997754433210 00001256999
Q ss_pred Eccchh-------hhhhcCee----------e--eccCCCeeEEEEcccccccchhHHHHHHH---HHhhCCcceEEEec
Q psy4493 88 IMPTGK-------LLKKKKIC----------L--MTESSSLKLLYVSPEKLAKSKSFMTKLQK---MYKAGCLARIAIDE 145 (323)
Q Consensus 88 ~~pTgs-------~l~~~~i~----------l--~~~~~~~~vii~Tp~~l~~~~~~~~~l~~---~~~~~~v~~vVvDE 145 (323)
++|+.. .+...+.. + .......+|+|+||+++.. .+.. ........+||+||
T Consensus 336 lvpr~eL~~Q~~~~f~~f~~~~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~------~l~~~~~~~~~~~~~lvIiDE 409 (1038)
T 2w00_A 336 VVDRKDLDYQTMKEYQRFSPDSVNGSENTAGLKRNLDKDDNKIIVTTIQKLNN------LMKAESDLPVYNQQVVFIFDE 409 (1038)
T ss_dssp EECGGGCCHHHHHHHHTTSTTCSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHH------HHHHCCCCGGGGSCEEEEEES
T ss_pred EeCcHHHHHHHHHHHHHhcccccccccCHHHHHHHhcCCCCCEEEEEHHHHHH------HHhcccchhccccccEEEEEc
Confidence 999988 22222111 1 1113468999999999963 2322 11234678999999
Q ss_pred cccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHH----HHHHHHhCCCCcEEEec------CCCCCCceeEE
Q psy4493 146 VHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVM----LDVQKMLQIEDCVVIKA------PFNRPNLFYEV 215 (323)
Q Consensus 146 ah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~----~~i~~~l~~~~~~~~~~------~~~~~~~~~~~ 215 (323)
||++... . ....+...+++.++++||||+..... ......+|-. ...+.. ....| ....+
T Consensus 410 AHrs~~~-----~---~~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~-i~~Y~l~~AI~dg~l~p-~~v~y 479 (1038)
T 2w00_A 410 CHRSQFG-----E---AQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRE-LHSYVITDAIRDEKVLK-FKVDY 479 (1038)
T ss_dssp CCTTHHH-----H---HHHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSE-EEEECHHHHHHHTSSCC-EEEEE
T ss_pred cchhcch-----H---HHHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCe-eEeecHHHHHhCCCcCC-eEEEE
Confidence 9986431 1 13346677788999999999975321 1223333311 000000 00011 11000
Q ss_pred Eec---------C-C-------------chhHHHHHHHHHHHhhc-----------CCCcEEEEeCChhHHHHHHHHHHh
Q psy4493 216 RIK---------P-A-------------AQKDCLDELADLMSRRF-----------RNQSGIIYTTSIKECEDLREELRN 261 (323)
Q Consensus 216 ~~~---------~-~-------------~~~~~~~~l~~~l~~~~-----------~~~~~iVF~~s~~~~~~l~~~L~~ 261 (323)
... . . ....+...+.+.+..+. .+.++||||+|+..|..+++.|.+
T Consensus 480 ~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~ 559 (1038)
T 2w00_A 480 NDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKR 559 (1038)
T ss_dssp CCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHH
T ss_pred EeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHh
Confidence 000 0 0 01122334433332111 346899999999999999999987
Q ss_pred CC------------CeE-EeecCC----------C----------CC-------------------------------Cc
Q psy4493 262 RG------------LRV-SAYHAK----------L----------ES-------------------------------NV 277 (323)
Q Consensus 262 ~~------------~~v-~~~h~~----------~----------~~-------------------------------~~ 277 (323)
.+ +++ .++|++ + ++ .+
T Consensus 560 ~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~ 639 (1038)
T 2w00_A 560 LQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYR 639 (1038)
T ss_dssp HHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHH
T ss_pred hhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHH
Confidence 54 455 455642 2 11 00
Q ss_pred ----------------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCC
Q psy4493 278 ----------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHS 318 (323)
Q Consensus 278 ----------------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~ 318 (323)
|+.+.+|+|+|.+ .++++|.|.+...|+|++||++|.+..
T Consensus 640 ~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 640 DLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp HHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCC
Confidence 9999999999999 788999999999999999999999864
No 59
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.88 E-value=2.5e-22 Score=159.60 Aligned_cols=115 Identities=18% Similarity=0.197 Sum_probs=100.2
Q ss_pred CCCCCCceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc-------
Q psy4493 205 PFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------- 277 (323)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------- 277 (323)
+...+++...+.... ..+|...|.+++.. ..+.++||||++++.|+.+++.|.+.|+.+..+||++++.+
T Consensus 4 ~~~~~~i~~~~~~~~--~~~K~~~L~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~ 80 (163)
T 2hjv_A 4 GLTTRNIEHAVIQVR--EENKFSLLKDVLMT-ENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNE 80 (163)
T ss_dssp --CCCCEEEEEEECC--GGGHHHHHHHHHHH-HCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred ccCcccceEEEEECC--hHHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHH
Confidence 344566665555544 45688888888875 36789999999999999999999999999999999999877
Q ss_pred -----------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 -----------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 -----------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++++|+|+|++++||++|+|.+..+|+||+||+||.|+.|.|+
T Consensus 81 f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~ 136 (163)
T 2hjv_A 81 FKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAI 136 (163)
T ss_dssp HHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEE
T ss_pred HHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEE
Confidence 999999999999999999999999999999999999999999875
No 60
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.87 E-value=8.7e-22 Score=159.56 Aligned_cols=114 Identities=18% Similarity=0.198 Sum_probs=88.3
Q ss_pred CCCCceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc---------
Q psy4493 207 NRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------- 277 (323)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~--------- 277 (323)
..+++...+...+ ..+|...|.+++....++.++||||++++.|+.+++.|...|+.+..+||++++.+
T Consensus 16 ~~~~i~q~~~~v~--~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 16 TSENITQKVVWVE--ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp CCTTEEEEEEECC--GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH
T ss_pred CCCCceEEEEEeC--cHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 3556665555544 45688889998886546789999999999999999999999999999999999887
Q ss_pred ---------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 ---------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 ---------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++++|+|+|++++||++|+|++..+|+||+||+||.|+.|.|+
T Consensus 94 ~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~ 147 (185)
T 2jgn_A 94 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 147 (185)
T ss_dssp HTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEE
T ss_pred cCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEE
Confidence 999999999999999999999999999999999999999999875
No 61
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.86 E-value=2.1e-21 Score=164.36 Aligned_cols=179 Identities=17% Similarity=0.138 Sum_probs=123.8
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCc
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD 84 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~ 84 (323)
+++++++.+.+++ +++..+++.|.++++.++.++++++.+|||+|||......+...+.-... . .-..+..
T Consensus 34 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~--~------~~~~~~~ 104 (242)
T 3fe2_A 34 ANFPANVMDVIAR-QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF--L------ERGDGPI 104 (242)
T ss_dssp TTCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC--C------CTTCCCS
T ss_pred cCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccc--c------ccCCCCE
Confidence 4567777777765 68999999999999999999999999999999997644333221000000 0 0012456
Q ss_pred EEEEccchh-------hhh----hcCeee-------------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcc
Q psy4493 85 AIIIMPTGK-------LLK----KKKICL-------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLA 139 (323)
Q Consensus 85 ~lv~~pTgs-------~l~----~~~i~l-------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~ 139 (323)
+++++||.+ .+. ..++.. ......++|+|+||+++.+ .+.. .....+++
T Consensus 105 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~------~l~~~~~~~~~~~ 178 (242)
T 3fe2_A 105 CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLID------FLECGKTNLRRTT 178 (242)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHH------HHHHTSCCCTTCC
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHH------HHHcCCCCccccc
Confidence 999999998 111 123331 1112347999999999974 3332 34567899
Q ss_pred eEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEec
Q psy4493 140 RIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKA 204 (323)
Q Consensus 140 ~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~ 204 (323)
++|+||||++.+++ |++.+..+ +....++.|+++||||++++..+.+..++ .++..+..
T Consensus 179 ~lViDEah~l~~~~--~~~~~~~i--~~~~~~~~q~~~~SAT~~~~~~~~~~~~l--~~~~~i~~ 237 (242)
T 3fe2_A 179 YLVLDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFL--KDYIHINI 237 (242)
T ss_dssp EEEETTHHHHHHTT--CHHHHHHH--HTTSCSSCEEEEEESCCCHHHHHHHHHHC--SSCEEEEE
T ss_pred EEEEeCHHHHhhhC--cHHHHHHH--HHhCCccceEEEEEeecCHHHHHHHHHHC--CCCEEEEe
Confidence 99999999999876 88776654 33333588999999999999877777775 45555543
No 62
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.86 E-value=7.1e-22 Score=158.28 Aligned_cols=100 Identities=16% Similarity=0.227 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeeec
Q psy4493 222 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGL 283 (323)
Q Consensus 222 ~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~~ 283 (323)
..+|...|.+++.. .++.++||||++++.|+.+++.|...|+.+..+||++++.+ |+++++
T Consensus 15 ~~~K~~~L~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 93 (172)
T 1t5i_A 15 DNEKNRKLFDLLDV-LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 93 (172)
T ss_dssp GGGHHHHHHHHHHH-SCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCST
T ss_pred hHHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhc
Confidence 35688888888874 36789999999999999999999999999999999999877 999999
Q ss_pred ccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 284 GIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 284 Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+|+|++++||+||+|++..+|+||+||+||.|+.|.++
T Consensus 94 Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~ 132 (172)
T 1t5i_A 94 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI 132 (172)
T ss_dssp TCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEE
T ss_pred CcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEE
Confidence 999999999999999999999999999999999999875
No 63
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.86 E-value=2.6e-21 Score=162.26 Aligned_cols=176 Identities=16% Similarity=0.111 Sum_probs=119.7
Q ss_pred CCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcE
Q psy4493 6 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDA 85 (323)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~ 85 (323)
++.+++.+.|++ .++..+++.|.++++.++.++++++.+|||+|||......+...+.-. ..-.....+..+
T Consensus 26 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~-------~~~~~~~~~~~~ 97 (228)
T 3iuy_A 26 QQYPDLLKSIIR-VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQ-------PISREQRNGPGM 97 (228)
T ss_dssp TTCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC----------------CCCSE
T ss_pred ccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhc-------cchhhccCCCcE
Confidence 345566666765 489999999999999999999999999999999976544332211000 000001245679
Q ss_pred EEEccchh-------hhhh---cCee---e----------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceE
Q psy4493 86 IIIMPTGK-------LLKK---KKIC---L----------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARI 141 (323)
Q Consensus 86 lv~~pTgs-------~l~~---~~i~---l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~v 141 (323)
++++||.+ .+.. .++. + ......++|+|+||+++.. .+.. .....+++++
T Consensus 98 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~------~~~~~~~~~~~~~~l 171 (228)
T 3iuy_A 98 LVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLND------LQMNNSVNLRSITYL 171 (228)
T ss_dssp EEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHH------HHHTTCCCCTTCCEE
T ss_pred EEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHH------HHHcCCcCcccceEE
Confidence 99999998 2222 2332 1 1112346999999999974 3332 3345689999
Q ss_pred EEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEE
Q psy4493 142 AIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVV 201 (323)
Q Consensus 142 VvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~ 201 (323)
|+||||++.+++ ++..+..+ +....++.|++++|||++++..+.+..++ .++..
T Consensus 172 ViDEah~~~~~~--~~~~~~~i--~~~~~~~~~~l~~SAT~~~~~~~~~~~~l--~~p~~ 225 (228)
T 3iuy_A 172 VIDEADKMLDME--FEPQIRKI--LLDVRPDRQTVMTSATWPDTVRQLALSYL--KDPMI 225 (228)
T ss_dssp EECCHHHHHHTT--CHHHHHHH--HHHSCSSCEEEEEESCCCHHHHHHHHTTC--SSCEE
T ss_pred EEECHHHHhccc--hHHHHHHH--HHhCCcCCeEEEEEeeCCHHHHHHHHHHC--CCCEE
Confidence 999999999865 88776655 44444588999999999998877666554 34443
No 64
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.86 E-value=3.6e-21 Score=160.42 Aligned_cols=178 Identities=16% Similarity=0.164 Sum_probs=123.3
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCc
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD 84 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~ 84 (323)
++.++++.+.|++ +++..+++.|.++++.++.++++++.+|||+|||..+...+...+.- -..+..
T Consensus 9 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~-------------~~~~~~ 74 (219)
T 1q0u_A 9 FPFQPFIIEAIKT-LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP-------------ERAEVQ 74 (219)
T ss_dssp SCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT-------------TSCSCC
T ss_pred CCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh-------------CcCCce
Confidence 5677888888865 78999999999999999999999999999999997644433321100 012457
Q ss_pred EEEEccchh-------hhhhc--------Cee---e----------eccCCCeeEEEEcccccccchhHHHHHHH-HHhh
Q psy4493 85 AIIIMPTGK-------LLKKK--------KIC---L----------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKA 135 (323)
Q Consensus 85 ~lv~~pTgs-------~l~~~--------~i~---l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~ 135 (323)
+++++||.+ .+... ++. + ......++|+|+||+++.+ .+.. ....
T Consensus 75 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~------~l~~~~~~~ 148 (219)
T 1q0u_A 75 AVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRIND------FIREQALDV 148 (219)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHH------HHHTTCCCG
T ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHH------HHHcCCCCc
Confidence 999999998 11111 222 1 1223467899999999974 3333 2344
Q ss_pred CCcceEEEeccccccccCCCchHHHHhHHHHHhhCC-CCCEEEEeecCChhHHHHHHHHhCCCCcEEEecCCCCC
Q psy4493 136 GCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP-DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRP 209 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 209 (323)
.+++++|+||||++.+++ +...+.. +....+ +.|++++|||++++..+.+.++ +.+|..+.....++
T Consensus 149 ~~~~~lViDEah~~~~~~--~~~~l~~---i~~~~~~~~~~l~~SAT~~~~~~~~~~~~--~~~p~~~~~~~~~~ 216 (219)
T 1q0u_A 149 HTAHILVVDEADLMLDMG--FITDVDQ---IAARMPKDLQMLVFSATIPEKLKPFLKKY--MENPTFVHVLEHHH 216 (219)
T ss_dssp GGCCEEEECSHHHHHHTT--CHHHHHH---HHHTSCTTCEEEEEESCCCGGGHHHHHHH--CSSCEEEECC----
T ss_pred CcceEEEEcCchHHhhhC--hHHHHHH---HHHhCCcccEEEEEecCCCHHHHHHHHHH--cCCCeEEEeecccc
Confidence 678999999999998865 6555443 444444 7899999999999887766666 45666666555444
No 65
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.86 E-value=4.5e-22 Score=164.84 Aligned_cols=101 Identities=23% Similarity=0.295 Sum_probs=91.4
Q ss_pred chhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeee
Q psy4493 221 AQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 282 (323)
Q Consensus 221 ~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~ 282 (323)
...+|+..|.+++.. ..++++||||++++.++.+++.|.+.|+.+..+||++++.+ |++++
T Consensus 14 ~~~~k~~~l~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 92 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAA 92 (212)
T ss_dssp CTTSHHHHHHHHHHH-HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTT
T ss_pred CHHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhh
Confidence 345678888888874 36789999999999999999999999999999999999877 99999
Q ss_pred cccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 283 LGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 283 ~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+|+|+|++++||++|+|.+..+|+||+||+||.|+.|.|+
T Consensus 93 ~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 132 (212)
T 3eaq_A 93 RGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVV 132 (212)
T ss_dssp CSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEE
T ss_pred cCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEE
Confidence 9999999999999999999999999999999999999875
No 66
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.86 E-value=1e-21 Score=159.85 Aligned_cols=111 Identities=15% Similarity=0.218 Sum_probs=94.5
Q ss_pred CCCceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc----------
Q psy4493 208 RPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---------- 277 (323)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~---------- 277 (323)
.+++...+.... ..+|...|.+++.. .+.++||||++++.++.+++.|...|+.+..+||++++.+
T Consensus 27 ~~~i~q~~~~~~--~~~K~~~L~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~ 102 (191)
T 2p6n_A 27 SLDVIQEVEYVK--EEAKMVYLLECLQK--TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRE 102 (191)
T ss_dssp -CCSEEEEEECC--GGGHHHHHHHHHTT--SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CcCceEEEEEcC--hHHHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc
Confidence 345554544443 45688899998875 4579999999999999999999999999999999999876
Q ss_pred --------ceeeecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 --------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 --------T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.|+
T Consensus 103 g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i 155 (191)
T 2p6n_A 103 GKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIAT 155 (191)
T ss_dssp TSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEE
T ss_pred CCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEE
Confidence 999999999999999999999999999999999999999999875
No 67
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=156.92 Aligned_cols=112 Identities=18% Similarity=0.157 Sum_probs=93.6
Q ss_pred CCceeEEEecCCchhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc-----------
Q psy4493 209 PNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------- 277 (323)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~----------- 277 (323)
+++...+...+. ..+|...|.+++.. ..++++||||++++.|+.+++.|.+.|+.+..+||++++.+
T Consensus 6 ~~i~q~~~~~~~-~~~K~~~L~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 6 NNIRQYYVLCEH-RKDKYQALCNIYGS-ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CCEEEEEEECSS-HHHHHHHHHHHHTT-SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred CCceEEEEEcCC-hHhHHHHHHHHHHh-CCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 455444444332 34588888888874 36789999999999999999999999999999999999887
Q ss_pred -------ceeeecccccCCccEEEEccCC------CCHhHHHHHhccCCCCCCCCCCC
Q psy4493 278 -------SIAFGLGIDKPNVRFVIHHCLS------KSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 278 -------T~~~~~Gid~~~v~~Vi~~~~p------~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
|+++++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.|+
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~ 141 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAF 141 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEE
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEE
Confidence 9999999999999999999999 89999999999999999999875
No 68
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.85 E-value=3.9e-21 Score=184.27 Aligned_cols=96 Identities=23% Similarity=0.244 Sum_probs=83.3
Q ss_pred HHHHHHHHHhh-cCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeeecccc
Q psy4493 226 LDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGID 286 (323)
Q Consensus 226 ~~~l~~~l~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~~Gid 286 (323)
...++..+... ..+.++||||+|++.|+.+++.|.+.|+++..+||++++.+ |+++++|+|
T Consensus 431 ~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlD 510 (661)
T 2d7d_A 431 IDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLD 510 (661)
T ss_dssp HHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCC
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcc
Confidence 34444444432 25689999999999999999999999999999999998655 899999999
Q ss_pred cCCccEEEEccC-----CCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 287 KPNVRFVIHHCL-----SKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 287 ~~~v~~Vi~~~~-----p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+|+|++||++|. |.+..+|+||+||+||. +.|+|+
T Consensus 511 ip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i 550 (661)
T 2d7d_A 511 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVI 550 (661)
T ss_dssp CTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEE
T ss_pred cCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEE
Confidence 999999999997 99999999999999998 678775
No 69
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.85 E-value=3.3e-21 Score=184.92 Aligned_cols=173 Identities=16% Similarity=0.137 Sum_probs=116.2
Q ss_pred CcceEEEeccccccc-cCCCchHHHHhHHHHHhh------------------C-CCCCEEEEeecCChhHHHHHHHHhCC
Q psy4493 137 CLARIAIDEVHCCSS-WGHDFRPDYQYLSILKTM------------------F-PDVPILGLTATATTKVMLDVQKMLQI 196 (323)
Q Consensus 137 ~v~~vVvDEah~~~~-~~~~~r~~~~~l~~l~~~------------------~-~~~~~i~lSAT~~~~~~~~i~~~l~~ 196 (323)
+-.++|+||+|++.+ |+..++.....+..+... . ...+++++|||+++.... . .
T Consensus 325 ~~~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~~~----~--~ 398 (664)
T 1c4o_A 325 EDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELA----H--S 398 (664)
T ss_dssp TTCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEESSCCHHHHH----H--C
T ss_pred hccEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEEEecCCCHHHHH----h--h
Confidence 345899999998753 332233322222222211 0 246789999999864321 1 0
Q ss_pred CCcEEEecCCC---CCCceeEEEecCCchhHHHHHHHHHHHhh-cCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCC
Q psy4493 197 EDCVVIKAPFN---RPNLFYEVRIKPAAQKDCLDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272 (323)
Q Consensus 197 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~ 272 (323)
. ..+..... .......+.... .....++..+... ..+.++||||+|++.|+.+++.|.+.|+++..+||+
T Consensus 399 ~--~~~~~~~r~~~l~~p~i~v~~~~----~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~ 472 (664)
T 1c4o_A 399 G--RVVEQIIRPTGLLDPLVRVKPTE----NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHE 472 (664)
T ss_dssp S--EEEEECSCTTCCCCCEEEEECST----THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred h--CeeeeeeccCCCCCCeEEEeccc----chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCC
Confidence 1 11111111 111122222222 2334444444322 267899999999999999999999999999999999
Q ss_pred CCCCc------------------ceeeecccccCCccEEEEccC-----CCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 273 LESNV------------------SIAFGLGIDKPNVRFVIHHCL-----SKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 273 ~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~-----p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+++.+ |+++++|+|+|+|++||++|. |.+..+|+||+||+||.| .|.|+
T Consensus 473 ~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i 544 (664)
T 1c4o_A 473 LDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVW 544 (664)
T ss_dssp CCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEE
T ss_pred CCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEE
Confidence 98665 899999999999999999997 899999999999999985 68765
No 70
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=159.62 Aligned_cols=172 Identities=17% Similarity=0.145 Sum_probs=120.1
Q ss_pred CCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHh----c
Q psy4493 6 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIAL----L 81 (323)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~----~ 81 (323)
+.++++.+.+++ .|+..+++.|.++++.++.++++++.+|||+|||......+.. .+. .
T Consensus 35 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~----------------~l~~~~~~ 97 (245)
T 3dkp_A 35 KINSRLLQNILD-AGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILM----------------QLKQPANK 97 (245)
T ss_dssp CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH----------------HHCSCCSS
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHH----------------HHhhcccC
Confidence 445556666665 5899999999999999999999999999999999764333322 122 3
Q ss_pred CCcEEEEccchh-------hhhh----cCeee--------------eccCCCeeEEEEcccccccchhHHHHHHHH---H
Q psy4493 82 KKDAIIIMPTGK-------LLKK----KKICL--------------MTESSSLKLLYVSPEKLAKSKSFMTKLQKM---Y 133 (323)
Q Consensus 82 ~~~~lv~~pTgs-------~l~~----~~i~l--------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~---~ 133 (323)
+..+++++||.+ .+.. .++.. ......++|+|+||+++.. .+... .
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~------~l~~~~~~~ 171 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIY------LLKQDPPGI 171 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHH------HHHSSSCSC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHH------HHHhCCCCc
Confidence 456999999998 2222 23321 1224567999999999974 34332 3
Q ss_pred hhCCcceEEEeccccccccC-CCchHHHHhHHHHHhhC-CCCCEEEEeecCChhHHHHHHHHhCCCCcEEEec
Q psy4493 134 KAGCLARIAIDEVHCCSSWG-HDFRPDYQYLSILKTMF-PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKA 204 (323)
Q Consensus 134 ~~~~v~~vVvDEah~~~~~~-~~~r~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~ 204 (323)
...+++++|+||||++.+|+ .+++..+..+ +.... ++.++++||||++++..+.+...+ .++..+..
T Consensus 172 ~~~~~~~lViDEah~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l--~~p~~i~~ 240 (245)
T 3dkp_A 172 DLASVEWLVVDESDKLFEDGKTGFRDQLASI--FLACTSHKVRRAMFSATFAYDVEQWCKLNL--DNVISVSI 240 (245)
T ss_dssp CCTTCCEEEESSHHHHHHHC--CHHHHHHHH--HHHCCCTTCEEEEEESSCCHHHHHHHHHHS--SSCEEEEE
T ss_pred ccccCcEEEEeChHHhcccccccHHHHHHHH--HHhcCCCCcEEEEEeccCCHHHHHHHHHhC--CCCEEEEe
Confidence 45689999999999998865 3566665544 33332 377999999999998876555554 45555543
No 71
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.85 E-value=3.1e-20 Score=153.20 Aligned_cols=167 Identities=19% Similarity=0.190 Sum_probs=119.9
Q ss_pred CCCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCC
Q psy4493 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKK 83 (323)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~ 83 (323)
+++.++++.+.|++ +++..+++.|.++++.++.++++++.+|||+|||......+...+.. -..+.
T Consensus 7 ~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-------------~~~~~ 72 (206)
T 1vec_A 7 DYCLKRELLMGIFE-MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL-------------KKDNI 72 (206)
T ss_dssp GSCCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT-------------TSCSC
T ss_pred hcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc-------------cCCCe
Confidence 36778888888865 79999999999999999999999999999999997654433321110 01235
Q ss_pred cEEEEccchh-------hhhhc-----Ceee-------------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCC
Q psy4493 84 DAIIIMPTGK-------LLKKK-----KICL-------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGC 137 (323)
Q Consensus 84 ~~lv~~pTgs-------~l~~~-----~i~l-------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~ 137 (323)
.+++++||.+ .+... ++.+ ......++|+|+||+++.. .+.. .....+
T Consensus 73 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~------~~~~~~~~~~~ 146 (206)
T 1vec_A 73 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILD------LIKKGVAKVDH 146 (206)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHH------HHHTTCSCCTT
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHH------HHHcCCcCccc
Confidence 6999999998 12111 2221 1223567999999999864 3332 234568
Q ss_pred cceEEEeccccccccCCCchHHHHhHHHHHhhCC-CCCEEEEeecCChhHHHHHHHHhC
Q psy4493 138 LARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP-DVPILGLTATATTKVMLDVQKMLQ 195 (323)
Q Consensus 138 v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~ 195 (323)
++++|+||||++.++ +++..+.. +....+ +.+++++|||++++..+.+..+++
T Consensus 147 ~~~lViDEah~~~~~--~~~~~l~~---i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~ 200 (206)
T 1vec_A 147 VQMIVLDEADKLLSQ--DFVQIMED---IILTLPKNRQILLYSATFPLSVQKFMNSHLE 200 (206)
T ss_dssp CCEEEEETHHHHTST--TTHHHHHH---HHHHSCTTCEEEEEESCCCHHHHHHHHHHCS
T ss_pred CCEEEEEChHHhHhh--CcHHHHHH---HHHhCCccceEEEEEeeCCHHHHHHHHHHcC
Confidence 999999999999874 46665544 444444 789999999999988777777753
No 72
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.84 E-value=2.3e-21 Score=154.37 Aligned_cols=97 Identities=24% Similarity=0.243 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeeecccc
Q psy4493 225 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGID 286 (323)
Q Consensus 225 ~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~~Gid 286 (323)
|...|.+++.. .+++++||||++++.|+.+++.|.+.|+.+..+||++++.+ |+++++|+|
T Consensus 17 K~~~l~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d 95 (165)
T 1fuk_A 17 KYECLTDLYDS-ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGID 95 (165)
T ss_dssp HHHHHHHHHHH-TTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCC
T ss_pred HHHHHHHHHHh-CCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCC
Confidence 78888888874 36789999999999999999999999999999999999877 999999999
Q ss_pred cCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 287 KPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 287 ~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+|++++||++|+|.+..+|+||+||+||.|+.|.|+
T Consensus 96 ~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 131 (165)
T 1fuk_A 96 VQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAI 131 (165)
T ss_dssp CCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEE
T ss_pred cccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEE
Confidence 999999999999999999999999999999999875
No 73
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.84 E-value=8.4e-21 Score=162.50 Aligned_cols=169 Identities=17% Similarity=0.155 Sum_probs=117.6
Q ss_pred CcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEE
Q psy4493 7 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAI 86 (323)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~l 86 (323)
+++++.+.|++ +|+..+++.|.++++.++.++++++.+|||+|||......+...+ .... ..-..+..++
T Consensus 61 l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l--------~~~~-~~~~~~~~~l 130 (262)
T 3ly5_A 61 VNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELI--------VKLR-FMPRNGTGVL 130 (262)
T ss_dssp CCHHHHHHHHH-TTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHH--------HHTT-CCGGGCCCEE
T ss_pred cCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHH--------Hhcc-ccccCCceEE
Confidence 56677777776 799999999999999999999999999999999976443332210 0000 0001356799
Q ss_pred EEccchh-------hhhh----cCeee-------------eccCCCeeEEEEcccccccchhHHHHHHH--HHhhCCcce
Q psy4493 87 IIMPTGK-------LLKK----KKICL-------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK--MYKAGCLAR 140 (323)
Q Consensus 87 v~~pTgs-------~l~~----~~i~l-------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~--~~~~~~v~~ 140 (323)
+++||.+ .+.+ .++.+ ......++|+|+||+++.. .+.. .....++++
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~------~~~~~~~~~~~~l~~ 204 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLD------HMQNTPGFMYKNLQC 204 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHH------HHHHCTTCCCTTCCE
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHH------HHHccCCcccccCCE
Confidence 9999999 2222 12221 1111347899999999974 3332 234568999
Q ss_pred EEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhC
Q psy4493 141 IAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQ 195 (323)
Q Consensus 141 vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~ 195 (323)
+|+||||++.+++ |++.+..+ +....+..|+++||||+++++.+.....++
T Consensus 205 lViDEah~l~~~~--~~~~l~~i--~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~ 255 (262)
T 3ly5_A 205 LVIDEADRILDVG--FEEELKQI--IKLLPTRRQTMLFSATQTRKVEDLARISLK 255 (262)
T ss_dssp EEECSHHHHHHTT--CHHHHHHH--HHHSCSSSEEEEECSSCCHHHHHHHHHHCS
T ss_pred EEEcChHHHhhhh--HHHHHHHH--HHhCCCCCeEEEEEecCCHHHHHHHHHHcC
Confidence 9999999999875 87776554 333334789999999999988776665553
No 74
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.84 E-value=2e-20 Score=157.80 Aligned_cols=173 Identities=13% Similarity=0.186 Sum_probs=120.4
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCc
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD 84 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~ 84 (323)
++.++++.+.|+ .+++..+++.|.++++.++.++++++.+|||+|||..+...+...+.- -..+..
T Consensus 35 l~l~~~l~~~l~-~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~-------------~~~~~~ 100 (237)
T 3bor_A 35 MNLKESLLRGIY-AYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI-------------EFKETQ 100 (237)
T ss_dssp SCCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT-------------TSCSCC
T ss_pred cCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh-------------cCCCce
Confidence 456777777775 578999999999999999999999999999999997644443321100 013457
Q ss_pred EEEEccchh-------hhhhc----Ceee--------------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCc
Q psy4493 85 AIIIMPTGK-------LLKKK----KICL--------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCL 138 (323)
Q Consensus 85 ~lv~~pTgs-------~l~~~----~i~l--------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v 138 (323)
+++++||.+ .+... ++.. ....+.++|+|+||+++.+ .+.. .....++
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~------~l~~~~~~~~~~ 174 (237)
T 3bor_A 101 ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFD------MLNRRYLSPKWI 174 (237)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHH------HHHTTSSCSTTC
T ss_pred EEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHH------HHHhCCcCcccC
Confidence 999999988 22221 2221 1112337999999999874 3333 2345679
Q ss_pred ceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEe
Q psy4493 139 ARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIK 203 (323)
Q Consensus 139 ~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~ 203 (323)
+++|+||||++.+++ +...+..+ +....++.+++++|||++++..+.+..+++ ++..+.
T Consensus 175 ~~lViDEah~~~~~~--~~~~l~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~--~p~~i~ 233 (237)
T 3bor_A 175 KMFVLDEADEMLSRG--FKDQIYEI--FQKLNTSIQVVLLSATMPTDVLEVTKKFMR--DPIRIL 233 (237)
T ss_dssp CEEEEESHHHHHHTT--CHHHHHHH--HHHSCTTCEEEEECSSCCHHHHHHHHHHCS--SCEEEC
T ss_pred cEEEECCchHhhccC--cHHHHHHH--HHhCCCCCeEEEEEEecCHHHHHHHHHHCC--CCEEEE
Confidence 999999999998865 66655443 333334789999999999988777777653 555543
No 75
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.84 E-value=3.7e-20 Score=157.32 Aligned_cols=170 Identities=18% Similarity=0.190 Sum_probs=120.9
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhc---
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL--- 81 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~--- 81 (323)
++.++++.+.|+ .+++..+++.|.++++.++.++++++.+|||+|||..+...+.. .+..
T Consensus 48 l~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~----------------~l~~~~~ 110 (249)
T 3ber_A 48 LGVTDVLCEACD-QLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN----------------ALLETPQ 110 (249)
T ss_dssp GTCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH----------------HHHHSCC
T ss_pred cCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHH----------------HHhcCCC
Confidence 455677777775 47999999999999999999999999999999999764443322 1222
Q ss_pred CCcEEEEccchh-------hhhh----cCeee-------------eccCCCeeEEEEcccccccchhHHHHHHH--HHhh
Q psy4493 82 KKDAIIIMPTGK-------LLKK----KKICL-------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK--MYKA 135 (323)
Q Consensus 82 ~~~~lv~~pTgs-------~l~~----~~i~l-------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~--~~~~ 135 (323)
+..+++++||.+ .+.. .++.. ......++|+|+||+++.+ .+.. ....
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~------~l~~~~~~~l 184 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLID------HLENTKGFNL 184 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHH------HHHHSTTCCC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHH------HHHcCCCcCc
Confidence 345999999998 2222 23331 1113467999999999974 3332 2345
Q ss_pred CCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEe
Q psy4493 136 GCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIK 203 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~ 203 (323)
.+++++|+||||++.+++ ++..+..+ +....++.++++||||++++..+.+..++ .++..+.
T Consensus 185 ~~~~~lViDEah~l~~~~--~~~~l~~i--~~~~~~~~~~l~~SAT~~~~v~~~~~~~l--~~p~~i~ 246 (249)
T 3ber_A 185 RALKYLVMDEADRILNMD--FETEVDKI--LKVIPRDRKTFLFSATMTKKVQKLQRAAL--KNPVKCA 246 (249)
T ss_dssp TTCCEEEECSHHHHHHTT--CHHHHHHH--HHSSCSSSEEEEEESSCCHHHHHHHHHHC--SSCEEEE
T ss_pred cccCEEEEcChhhhhccC--hHHHHHHH--HHhCCCCCeEEEEeccCCHHHHHHHHHHC--CCCEEEE
Confidence 689999999999998864 77776554 33333478999999999998877666664 4555543
No 76
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.83 E-value=4.2e-20 Score=155.70 Aligned_cols=177 Identities=18% Similarity=0.169 Sum_probs=120.7
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCc
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD 84 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~ 84 (323)
++.++++.+.|++ .++..+++.|.++++.++.++++++.+|||+|||..+...+...+--.. . ....+..
T Consensus 30 ~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~---~------~~~~~~~ 99 (236)
T 2pl3_A 30 FPLSKKTLKGLQE-AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQ---W------TSTDGLG 99 (236)
T ss_dssp SCCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTT---C------CGGGCCC
T ss_pred cCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhc---c------cccCCce
Confidence 5677888888865 6999999999999999999999999999999999764433322100000 0 0023567
Q ss_pred EEEEccchh-------hhhhc----Ceee------------eccCCCeeEEEEcccccccchhHHHHHHH--HHhhCCcc
Q psy4493 85 AIIIMPTGK-------LLKKK----KICL------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK--MYKAGCLA 139 (323)
Q Consensus 85 ~lv~~pTgs-------~l~~~----~i~l------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~--~~~~~~v~ 139 (323)
+++++||.+ .+... ++.. ......++|+|+||+++.. .+.. .....+++
T Consensus 100 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~------~l~~~~~~~~~~~~ 173 (236)
T 2pl3_A 100 VLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQ------HMDETVSFHATDLQ 173 (236)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHH------HHHHCSSCCCTTCC
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHH------HHHhcCCccccccc
Confidence 999999988 22222 2221 0112367999999999964 3333 23456899
Q ss_pred eEEEeccccccccCCCchHHHHhHHHHHhhCC-CCCEEEEeecCChhHHHHHHHHhCCCCcEEEec
Q psy4493 140 RIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP-DVPILGLTATATTKVMLDVQKMLQIEDCVVIKA 204 (323)
Q Consensus 140 ~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~ 204 (323)
++|+||||++.+++ +...+.. +....+ +.++++||||+++...+....+ +.++..+..
T Consensus 174 ~lViDEah~~~~~~--~~~~~~~---i~~~~~~~~~~l~~SAT~~~~~~~~~~~~--~~~p~~i~~ 232 (236)
T 2pl3_A 174 MLVLDEADRILDMG--FADTMNA---VIENLPKKRQTLLFSATQTKSVKDLARLS--LKNPEYVWV 232 (236)
T ss_dssp EEEETTHHHHHHTT--THHHHHH---HHHTSCTTSEEEEEESSCCHHHHHHHHHS--CSSCEEEEC
T ss_pred EEEEeChHHHhcCC--cHHHHHH---HHHhCCCCCeEEEEEeeCCHHHHHHHHHh--CCCCEEEEe
Confidence 99999999998865 6665444 444444 7789999999998876543333 456665543
No 77
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.83 E-value=6.7e-20 Score=153.20 Aligned_cols=173 Identities=13% Similarity=0.189 Sum_probs=119.2
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCc
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD 84 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~ 84 (323)
++.++++.+.|++ +++..++++|.++++.++.++++++.+|||+|||..+...+...+.- -..+..
T Consensus 19 l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~-------------~~~~~~ 84 (224)
T 1qde_A 19 MELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-------------SVKAPQ 84 (224)
T ss_dssp GTCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT-------------TCCSCC
T ss_pred cCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc-------------cCCCce
Confidence 3456777777764 68999999999999999999999999999999997643333221100 013457
Q ss_pred EEEEccchh-------hhhh----cCeee------------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcce
Q psy4493 85 AIIIMPTGK-------LLKK----KKICL------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLAR 140 (323)
Q Consensus 85 ~lv~~pTgs-------~l~~----~~i~l------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~ 140 (323)
+++++||.+ .+.. .++.+ ......++|+|+||+++.. .+.. .....++++
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~------~~~~~~~~~~~~~~ 158 (224)
T 1qde_A 85 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFD------NIQRRRFRTDKIKM 158 (224)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHH------HHHTTSSCCTTCCE
T ss_pred EEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHH------HHHhCCcchhhCcE
Confidence 999999988 2222 12321 1112347999999999864 3332 334568999
Q ss_pred EEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEe
Q psy4493 141 IAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIK 203 (323)
Q Consensus 141 vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~ 203 (323)
+|+||||++.+++ ++..+..+ +....++.+++++|||++++..+.+..++ .++..+.
T Consensus 159 iViDEah~~~~~~--~~~~l~~i--~~~~~~~~~~i~lSAT~~~~~~~~~~~~~--~~p~~i~ 215 (224)
T 1qde_A 159 FILDEADEMLSSG--FKEQIYQI--FTLLPPTTQVVLLSATMPNDVLEVTTKFM--RNPVRIL 215 (224)
T ss_dssp EEEETHHHHHHTT--CHHHHHHH--HHHSCTTCEEEEEESSCCHHHHHHHHHHC--SSCEEEC
T ss_pred EEEcChhHHhhhh--hHHHHHHH--HHhCCccCeEEEEEeecCHHHHHHHHHHC--CCCEEEE
Confidence 9999999998865 66655443 33333478999999999998877666664 4455443
No 78
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.83 E-value=3.2e-20 Score=153.13 Aligned_cols=177 Identities=20% Similarity=0.204 Sum_probs=122.1
Q ss_pred CCCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCC
Q psy4493 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKK 83 (323)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~ 83 (323)
++++++++.+.|++ .++..++++|.++++.++.++++++.+|||+|||......+...+.-.. ....+.
T Consensus 5 ~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~----------~~~~~~ 73 (207)
T 2gxq_A 5 DFPLKPEILEALHG-RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ----------ERGRKP 73 (207)
T ss_dssp GSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC----------CTTCCC
T ss_pred hcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc----------ccCCCC
Confidence 46788888888876 7899999999999999999999999999999999765444433111000 001345
Q ss_pred cEEEEccchh-------hhhhc----Cee-e----------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcce
Q psy4493 84 DAIIIMPTGK-------LLKKK----KIC-L----------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLAR 140 (323)
Q Consensus 84 ~~lv~~pTgs-------~l~~~----~i~-l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~ 140 (323)
.+++++||.+ .+... .+. + ......++|+|+||+++.. .+.. .....++++
T Consensus 74 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~------~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 74 RALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALD------YLRQGVLDLSRVEV 147 (207)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHH------HHHHTSSCCTTCSE
T ss_pred cEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHH------HHHcCCcchhhceE
Confidence 6999999988 22222 111 1 0111357899999999864 3332 334568999
Q ss_pred EEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhCCCCcEEEe
Q psy4493 141 IAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIK 203 (323)
Q Consensus 141 vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~ 203 (323)
+|+||||++.+++ ++..+..+ +....++.+++++|||++++..+....++ .++..+.
T Consensus 148 iViDEah~~~~~~--~~~~~~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~p~~i~ 204 (207)
T 2gxq_A 148 AVLDEADEMLSMG--FEEEVEAL--LSATPPSRQTLLFSATLPSWAKRLAERYM--KNPVLIN 204 (207)
T ss_dssp EEEESHHHHHHTT--CHHHHHHH--HHTSCTTSEEEEECSSCCHHHHHHHHHHC--SSCEEEE
T ss_pred EEEEChhHhhccc--hHHHHHHH--HHhCCccCeEEEEEEecCHHHHHHHHHHc--CCCeEEE
Confidence 9999999998754 66665443 33333478999999999988766555554 4555543
No 79
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.83 E-value=8.7e-21 Score=164.53 Aligned_cols=99 Identities=21% Similarity=0.303 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeeecc
Q psy4493 223 KDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 284 (323)
Q Consensus 223 ~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~~G 284 (323)
.+|+..|.+++... .++++||||++++.++.+++.|.+.|+.+..+||+|++.+ |+++++|
T Consensus 13 ~~K~~~L~~ll~~~-~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~G 91 (300)
T 3i32_A 13 RGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARG 91 (300)
T ss_dssp SSHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCS
T ss_pred HHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcC
Confidence 55788888888754 5889999999999999999999999999999999999987 9999999
Q ss_pred cccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 285 IDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 285 id~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+|+|++++||+||+|.+..+|+||+||+||.|+.|.|+
T Consensus 92 idi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i 129 (300)
T 3i32_A 92 LDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVV 129 (300)
T ss_dssp TTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEE
T ss_pred ccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEE
Confidence 99999999999999999999999999999999999886
No 80
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.83 E-value=4.8e-20 Score=154.76 Aligned_cols=173 Identities=17% Similarity=0.213 Sum_probs=118.8
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCc
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD 84 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~ 84 (323)
++.++++.+.|++ .++..+++.|.++++.++.++++++.+|||+|||..+...+...+.. -..+..
T Consensus 29 l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~-------------~~~~~~ 94 (230)
T 2oxc_A 29 LLLSRPVLEGLRA-AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL-------------ENLSTQ 94 (230)
T ss_dssp GTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT-------------TSCSCC
T ss_pred cCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh-------------cCCCce
Confidence 3456677777754 78999999999999999999999999999999997643333221100 012457
Q ss_pred EEEEccchh-------hhhhc-----Ceee------------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcc
Q psy4493 85 AIIIMPTGK-------LLKKK-----KICL------------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLA 139 (323)
Q Consensus 85 ~lv~~pTgs-------~l~~~-----~i~l------------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~ 139 (323)
+++++||.+ .+... ++.. ......++|+|+||+++.. .++. .....+++
T Consensus 95 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~------~~~~~~~~~~~~~ 168 (230)
T 2oxc_A 95 ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQ------LIELDYLNPGSIR 168 (230)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHH------HHHTTSSCGGGCC
T ss_pred EEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHH------HHhcCCcccccCC
Confidence 999999988 22222 2321 1112457999999999974 3332 23446789
Q ss_pred eEEEeccccccccCCCchHHHHhHHHHHhhCC-CCCEEEEeecCChhHHHHHHHHhCCCCcEEEe
Q psy4493 140 RIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP-DVPILGLTATATTKVMLDVQKMLQIEDCVVIK 203 (323)
Q Consensus 140 ~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~ 203 (323)
++|+||||++.++| .|+..+.. +....+ +.|++++|||++++..+.+..+ +.++..+.
T Consensus 169 ~lViDEah~~~~~~-~~~~~~~~---i~~~~~~~~~~l~lSAT~~~~~~~~~~~~--~~~p~~i~ 227 (230)
T 2oxc_A 169 LFILDEADKLLEEG-SFQEQINW---IYSSLPASKQMLAVSATYPEFLANALTKY--MRDPTFVR 227 (230)
T ss_dssp EEEESSHHHHHSTT-SSHHHHHH---HHHHSCSSCEEEEEESCCCHHHHHHHTTT--CSSCEEEC
T ss_pred EEEeCCchHhhcCc-chHHHHHH---HHHhCCCCCeEEEEEeccCHHHHHHHHHH--cCCCeEEE
Confidence 99999999998865 47776554 344444 7899999999998875555444 34555543
No 81
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.71 E-value=6.9e-22 Score=158.12 Aligned_cols=99 Identities=14% Similarity=0.175 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------------------ceeeecc
Q psy4493 223 KDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 284 (323)
Q Consensus 223 ~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------------------T~~~~~G 284 (323)
.+|...|.+++.. .++.++||||++++.|+.+++.|...|+.+..+||++++.+ |+++++|
T Consensus 15 ~~k~~~l~~ll~~-~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 93 (170)
T 2yjt_D 15 EHKTALLVHLLKQ-PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARG 93 (170)
Confidence 4567777777764 36689999999999999999999999999999999999877 9999999
Q ss_pred cccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCCC
Q psy4493 285 IDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRSR 322 (323)
Q Consensus 285 id~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 322 (323)
+|+|++++||++|+|.+..+|+||+||+||.|+.|.++
T Consensus 94 id~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~ 131 (170)
T 2yjt_D 94 IDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAI 131 (170)
Confidence 99999999999999999999999999999999999876
No 82
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.81 E-value=1.1e-19 Score=151.39 Aligned_cols=172 Identities=12% Similarity=0.131 Sum_probs=117.9
Q ss_pred CCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCc
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKD 84 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~ 84 (323)
++.++++.+.|++ .++..++++|.++++.++.++++++.+|||+|||......+...+.- -..+..
T Consensus 19 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~-------------~~~~~~ 84 (220)
T 1t6n_A 19 FLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-------------VTGQVS 84 (220)
T ss_dssp SCCCHHHHHHHHH-TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC-------------CTTCCC
T ss_pred cCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc-------------cCCCEE
Confidence 5567788888865 78999999999999999999999999999999997655444331100 001347
Q ss_pred EEEEccchh-------hhhhc-----Ceee--e------------ccCCCeeEEEEcccccccchhHHHHHHH-HHhhCC
Q psy4493 85 AIIIMPTGK-------LLKKK-----KICL--M------------TESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGC 137 (323)
Q Consensus 85 ~lv~~pTgs-------~l~~~-----~i~l--~------------~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~ 137 (323)
+++++||.+ .+... ++.+ . ...+.++|+|+||+++.. .++. .....+
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~------~~~~~~~~~~~ 158 (220)
T 1t6n_A 85 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILA------LARNKSLNLKH 158 (220)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHH------HHHTTSSCCTT
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHH------HHHhCCCCccc
Confidence 999999988 22222 3331 0 012346999999999874 3333 234568
Q ss_pred cceEEEeccccccccCCCchHHHHhHHHHHhhCC-CCCEEEEeecCChhHHHHHHHHhCCCCcEEE
Q psy4493 138 LARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP-DVPILGLTATATTKVMLDVQKMLQIEDCVVI 202 (323)
Q Consensus 138 v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~ 202 (323)
++++|+||||++.++ .+++..+.. +....+ +.+++++|||++++..+....++ .++..+
T Consensus 159 ~~~lViDEah~~~~~-~~~~~~~~~---i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~p~~i 218 (220)
T 1t6n_A 159 IKHFILDECDKMLEQ-LDMRRDVQE---IFRMTPHEKQVMMFSATLSKEIRPVCRKFM--QDPMEI 218 (220)
T ss_dssp CCEEEEESHHHHHSS-HHHHHHHHH---HHHTSCSSSEEEEEESCCCTTTHHHHHTTC--SSCEEE
T ss_pred CCEEEEcCHHHHhcc-cCcHHHHHH---HHHhCCCcCeEEEEEeecCHHHHHHHHHHc--CCCeEE
Confidence 999999999999763 135544433 444444 78999999999998766555443 444443
No 83
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=157.88 Aligned_cols=172 Identities=14% Similarity=0.110 Sum_probs=118.9
Q ss_pred CCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcC--CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCC
Q psy4493 6 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK--KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKK 83 (323)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~--~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~ 83 (323)
+.++++.+.|++ .++..+++.|..+++.++.+ +++++.+|||+|||..+...+...+.- -..+.
T Consensus 98 ~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~-------------~~~~~ 163 (300)
T 3fmo_B 98 RLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP-------------ANKYP 163 (300)
T ss_dssp TCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT-------------TSCSC
T ss_pred CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc-------------cCCCc
Confidence 346677777766 79999999999999999987 899999999999997654333221100 01123
Q ss_pred cEEEEccchh-------hhhhc-----Cee--e--------eccCCCeeEEEEcccccccchhHHHHHHH--HHhhCCcc
Q psy4493 84 DAIIIMPTGK-------LLKKK-----KIC--L--------MTESSSLKLLYVSPEKLAKSKSFMTKLQK--MYKAGCLA 139 (323)
Q Consensus 84 ~~lv~~pTgs-------~l~~~-----~i~--l--------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~--~~~~~~v~ 139 (323)
.+++++||.+ .+... ++. . ......++|+|+||++|++ .+.. .....+++
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~------~l~~~~~~~l~~l~ 237 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLD------WCSKLKFIDPKKIK 237 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHH------HHTTTCCCCGGGCS
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHH------HHHhcCCCChhhce
Confidence 5999999999 11111 122 1 1223457899999999974 3432 23456899
Q ss_pred eEEEeccccccccCCCchHHHHhHHHHHhhC-CCCCEEEEeecCChhHHHHHHHHhCCCCcEEEe
Q psy4493 140 RIAIDEVHCCSSWGHDFRPDYQYLSILKTMF-PDVPILGLTATATTKVMLDVQKMLQIEDCVVIK 203 (323)
Q Consensus 140 ~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~ 203 (323)
++||||||++.+.+ +|...+.. +.... ++.|+++||||+++++......++ .++..+.
T Consensus 238 ~lVlDEad~l~~~~-~~~~~~~~---i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l--~~p~~i~ 296 (300)
T 3fmo_B 238 VFVLDEADVMIATQ-GHQDQSIR---IQRMLPRNCQMLLFSATFEDSVWKFAQKVV--PDPNVIK 296 (300)
T ss_dssp EEEETTHHHHHHST-THHHHHHH---HHTTSCTTCEEEEEESCCCHHHHHHHHHHS--SSCEEEE
T ss_pred EEEEeCHHHHhhcc-CcHHHHHH---HHHhCCCCCEEEEEeccCCHHHHHHHHHHC--CCCeEEE
Confidence 99999999998632 36665544 33443 478999999999998877666664 4555554
No 84
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.81 E-value=5.5e-20 Score=156.66 Aligned_cols=183 Identities=16% Similarity=0.152 Sum_probs=117.3
Q ss_pred CcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEE
Q psy4493 7 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAI 86 (323)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~l 86 (323)
+++++.+.|+ ..++..+++.|.++++.++.++++++.+|||+|||..+...+...+.-.... +.. .....+..++
T Consensus 30 l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~--~~~--~~~~~~~~~l 104 (253)
T 1wrb_A 30 LDPTIRNNIL-LASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLN--QQR--YSKTAYPKCL 104 (253)
T ss_dssp CCCSTTTTTT-TTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC----------CCBCCSEE
T ss_pred CCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccc--ccc--ccccCCceEE
Confidence 3444444453 4688999999999999999999999999999999976544433211000000 000 0001235799
Q ss_pred EEccchh-------hhhh----cCee---e----------eccCCCeeEEEEcccccccchhHHHHHHH-HHhhCCcceE
Q psy4493 87 IIMPTGK-------LLKK----KKIC---L----------MTESSSLKLLYVSPEKLAKSKSFMTKLQK-MYKAGCLARI 141 (323)
Q Consensus 87 v~~pTgs-------~l~~----~~i~---l----------~~~~~~~~vii~Tp~~l~~~~~~~~~l~~-~~~~~~v~~v 141 (323)
+++||.+ .+.. .++. + ......++|+|+||+++.. .+.. .....+++++
T Consensus 105 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~------~l~~~~~~~~~~~~l 178 (253)
T 1wrb_A 105 ILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVD------FIEKNKISLEFCKYI 178 (253)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHH------HHHTTSBCCTTCCEE
T ss_pred EEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHH------HHHcCCCChhhCCEE
Confidence 9999998 2221 1222 1 1123467999999999974 3333 2345688999
Q ss_pred EEeccccccccCCCchHHHHhHHHHHhhCC--CCCEEEEeecCChhHHHHHHHHhCCCCcEEEec
Q psy4493 142 AIDEVHCCSSWGHDFRPDYQYLSILKTMFP--DVPILGLTATATTKVMLDVQKMLQIEDCVVIKA 204 (323)
Q Consensus 142 VvDEah~~~~~~~~~r~~~~~l~~l~~~~~--~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~ 204 (323)
|+||||++.+++ |+..+..+........ +.|+++||||++++..+....++ .++..+..
T Consensus 179 ViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l--~~~~~i~~ 239 (253)
T 1wrb_A 179 VLDEADRMLDMG--FEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFL--YNYIFMTV 239 (253)
T ss_dssp EEETHHHHHHTT--CHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHC--SSCEEEEE
T ss_pred EEeCHHHHHhCc--hHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHc--CCCEEEEE
Confidence 999999999865 7777655422111222 57899999999998877666664 35555543
No 85
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.77 E-value=1.9e-17 Score=158.07 Aligned_cols=115 Identities=17% Similarity=0.067 Sum_probs=81.4
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEcc
Q psy4493 11 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMP 90 (323)
Q Consensus 11 ~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~p 90 (323)
+++..++.+|+ .+.+.|..++...+.|+ +..+.||.|||..+...+ +-..+.|+.++|++|
T Consensus 68 vREAs~R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~----------------~L~aL~G~qv~VvTP 128 (997)
T 2ipc_A 68 TRESAKRYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAV----------------ALNALTGKGVHVVTV 128 (997)
T ss_dssp HHHHHHHHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHH----------------HHHHTTCSCCEEEES
T ss_pred HHHHHHHHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHH----------------HHHHHhCCCEEEEeC
Confidence 46677777888 77999999999999888 889999999995433222 111346788999999
Q ss_pred chh-----------hhhhcCeee-----------eccCCCeeEEEEccccc-ccchhHHHHHHHH-------HhhC---C
Q psy4493 91 TGK-----------LLKKKKICL-----------MTESSSLKLLYVSPEKL-AKSKSFMTKLQKM-------YKAG---C 137 (323)
Q Consensus 91 Tgs-----------~l~~~~i~l-----------~~~~~~~~vii~Tp~~l-~~~~~~~~~l~~~-------~~~~---~ 137 (323)
|.. .....|+.. ....-.++|+|+||+.+ .+ .++.. .... +
T Consensus 129 TreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfD------yLrd~m~~~~~~l~~r~d~~ 202 (997)
T 2ipc_A 129 NDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAYLADVTYVTNSELGFD------YLRDNMAISPDQLVLRHDHP 202 (997)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHH------HHHHTSCSSTTTCCSCSSSS
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhH------HHHHhhhcchhhcccccCCC
Confidence 998 223345552 11112479999999998 32 34432 2344 7
Q ss_pred cceEEEecccccc
Q psy4493 138 LARIAIDEVHCCS 150 (323)
Q Consensus 138 v~~vVvDEah~~~ 150 (323)
++++||||+|.++
T Consensus 203 l~~lIIDEaDsmL 215 (997)
T 2ipc_A 203 LHYAIIDEVDSIL 215 (997)
T ss_dssp SCEEEETTHHHHT
T ss_pred cceEEEechHHHH
Confidence 8999999999876
No 86
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.63 E-value=4e-15 Score=125.04 Aligned_cols=143 Identities=14% Similarity=0.167 Sum_probs=97.9
Q ss_pred CCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC----CcEEEEccchh-----
Q psy4493 23 DFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK----KDAIIIMPTGK----- 93 (323)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~----~~~lv~~pTgs----- 93 (323)
.+.+.|.++++.+..++++++.+|||+|||..+...+... . ...+ ..+++..||..
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~-------------~--~~~~~~~~~~~l~~~p~~~la~q~ 125 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDD-------------F--IQNDRAAECNIVVTQPRRISAVSV 125 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHH-------------H--HHTTCGGGCEEEEEESSHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcc-------------h--hhcCCCCceEEEEeccchHHHHHH
Confidence 4578999999999999999999999999997665444321 0 1122 26889999987
Q ss_pred --hhh-hcCee--------e----eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccc-cccCCCch
Q psy4493 94 --LLK-KKKIC--------L----MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCC-SSWGHDFR 157 (323)
Q Consensus 94 --~l~-~~~i~--------l----~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~-~~~~~~~r 157 (323)
.+. ..+.. + .......+|+|+||+++++ .+.. ...+++++|+||||.+ .+. ++.
T Consensus 126 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~------~l~~--~l~~~~~lVlDEah~~~~~~--~~~ 195 (235)
T 3llm_A 126 AERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLR------KLEA--GIRGISHVIVDEIHERDINT--DFL 195 (235)
T ss_dssp HHHHHHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHH------HHHH--CCTTCCEEEECCTTSCCHHH--HHH
T ss_pred HHHHHHHhccccCceEEEeechhhccCCCCCeEEEECHHHHHH------HHHh--hhcCCcEEEEECCccCCcch--HHH
Confidence 111 11111 1 1223568899999999975 3333 3578999999999975 331 122
Q ss_pred HHHHhHHHHHhhCCCCCEEEEeecCChhHHHHHHHHhC
Q psy4493 158 PDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQ 195 (323)
Q Consensus 158 ~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~ 195 (323)
. ..+..+....++.|+++||||++.+. +.++++
T Consensus 196 ~--~~l~~i~~~~~~~~~il~SAT~~~~~---~~~~~~ 228 (235)
T 3llm_A 196 L--VVLRDVVQAYPEVRIVLMSATIDTSM---FCEYFF 228 (235)
T ss_dssp H--HHHHHHHHHCTTSEEEEEECSSCCHH---HHHHTT
T ss_pred H--HHHHHHHhhCCCCeEEEEecCCCHHH---HHHHcC
Confidence 1 23555666667899999999999865 566664
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.61 E-value=3e-15 Score=123.88 Aligned_cols=148 Identities=22% Similarity=0.224 Sum_probs=88.8
Q ss_pred HhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchhhhh
Q psy4493 17 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLK 96 (323)
Q Consensus 17 ~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs~l~ 96 (323)
.......++++|.++++.++.++++++.+|||+|||......+...+ +. -.....+..+++++||.+...
T Consensus 27 ~~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~--------~~--~~~~~~~~~~lil~p~~~L~~ 96 (216)
T 3b6e_A 27 SPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHL--------DK--KKKASEPGKVIVLVNKVLLVE 96 (216)
T ss_dssp CCSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHH--------HH--HHHTTCCCCEEEEESSHHHHH
T ss_pred CccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHH--------hh--cccccCCCcEEEEECHHHHHH
Confidence 33455789999999999999999999999999999987666554310 00 000112567999999987211
Q ss_pred h-----------cCeeee-------------ccCCCeeEEEEcccccccchhHHHHHHHH-------HhhCCcceEEEec
Q psy4493 97 K-----------KKICLM-------------TESSSLKLLYVSPEKLAKSKSFMTKLQKM-------YKAGCLARIAIDE 145 (323)
Q Consensus 97 ~-----------~~i~l~-------------~~~~~~~vii~Tp~~l~~~~~~~~~l~~~-------~~~~~v~~vVvDE 145 (323)
+ .++.+. .....++|+|+||+++.. .+... ....++++|||||
T Consensus 97 q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~------~~~~~~~~~~~~~~~~~~~~iIiDE 170 (216)
T 3b6e_A 97 QLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILEN------SLLNLENGEDAGVQLSDFSLIIIDE 170 (216)
T ss_dssp HHHHHTHHHHHTTTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHH------HHHC-------CCCGGGCSEEEETT
T ss_pred HHHHHHHHHHhccCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHH------HHhccCcccccccchhcccEEEEEC
Confidence 1 122210 111237899999999864 22221 2345789999999
Q ss_pred cccccccCCCchHHHHhHHH--HHhh---------CCCCCEEEEeec
Q psy4493 146 VHCCSSWGHDFRPDYQYLSI--LKTM---------FPDVPILGLTAT 181 (323)
Q Consensus 146 ah~~~~~~~~~r~~~~~l~~--l~~~---------~~~~~~i~lSAT 181 (323)
||++...+ .++..+..+.. +... .++.++++||||
T Consensus 171 ah~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 171 CHHTNKEA-VYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp C--------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred chhhccCC-cHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 99997532 23332222211 1111 157899999998
No 88
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.58 E-value=1.3e-15 Score=130.34 Aligned_cols=99 Identities=13% Similarity=0.015 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHhh-cCCCcEEEEeCChhHHHHHHHHHHhC-CCeEEeecCCCCCCc--------------------cee
Q psy4493 223 KDCLDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESNV--------------------SIA 280 (323)
Q Consensus 223 ~~~~~~l~~~l~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~-~~~v~~~h~~~~~~~--------------------T~~ 280 (323)
..|+..|.+++... ..+.++||||+++..++.++..|.+. |+.+..+||+++..+ |++
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~ 174 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 174 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhh
Confidence 45777777777643 26789999999999999999999885 999999999998766 899
Q ss_pred eecccccCCccEEEEccCCCCHhHHHHHhccCCCCCCCCCC
Q psy4493 281 FGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLGKHSFRS 321 (323)
Q Consensus 281 ~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~ 321 (323)
+++|+|++++++||+||+|+++..|.||+||++|.|+.+.+
T Consensus 175 ~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v 215 (271)
T 1z5z_A 175 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNV 215 (271)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTTTC--------------CC
T ss_pred hcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCce
Confidence 99999999999999999999999999999999999998764
No 89
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.57 E-value=1.9e-14 Score=120.99 Aligned_cols=129 Identities=20% Similarity=0.141 Sum_probs=91.1
Q ss_pred CCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-------h
Q psy4493 22 TDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-------L 94 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-------~ 94 (323)
..+++.|.++++.++.+++.++.+|||.|||......+.. .++.+++++||.+ .
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-------------------~~~~~liv~P~~~L~~q~~~~ 152 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE-------------------LSTPTLIVVPTLALAEQWKER 152 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHH-------------------SCSCEEEEESSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHH-------------------cCCCEEEEeCCHHHHHHHHHH
Confidence 3678999999999998888999999999999765554433 2567999999987 3
Q ss_pred hhhcCee-e----eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhh
Q psy4493 95 LKKKKIC-L----MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTM 169 (323)
Q Consensus 95 l~~~~i~-l----~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~ 169 (323)
+...++. + .......+|+|+|++.+... ... ...++++|||||||++.... ++ .+...
T Consensus 153 ~~~~~~~~v~~~~g~~~~~~~i~v~T~~~l~~~------~~~--~~~~~~llIiDEaH~l~~~~--~~-------~i~~~ 215 (237)
T 2fz4_A 153 LGIFGEEYVGEFSGRIKELKPLTVSTYDSAYVN------AEK--LGNRFMLLIFDEVHHLPAES--YV-------QIAQM 215 (237)
T ss_dssp HGGGCGGGEEEESSSCBCCCSEEEEEHHHHHHT------HHH--HTTTCSEEEEECSSCCCTTT--HH-------HHHHT
T ss_pred HHhCCCCeEEEEeCCCCCcCCEEEEeHHHHHhh------HHH--hcccCCEEEEECCccCCChH--HH-------HHHHh
Confidence 3333433 2 12234578999999988641 111 22469999999999997632 32 24455
Q ss_pred CCCCCEEEEeecCChhH
Q psy4493 170 FPDVPILGLTATATTKV 186 (323)
Q Consensus 170 ~~~~~~i~lSAT~~~~~ 186 (323)
++..++++||||+.+..
T Consensus 216 ~~~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 216 SIAPFRLGLTATFERED 232 (237)
T ss_dssp CCCSEEEEEEESCC---
T ss_pred ccCCEEEEEecCCCCCC
Confidence 56788999999998754
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.53 E-value=2.6e-14 Score=123.43 Aligned_cols=132 Identities=14% Similarity=0.089 Sum_probs=92.0
Q ss_pred CCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC-CcEEEEccchh-------
Q psy4493 22 TDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK-KDAIIIMPTGK------- 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~~pTgs------- 93 (323)
-.++++|.++++.++.+++.++.+|||+|||......+.. .+..+ ..+++++||.+
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~----------------~~~~~~~~~lil~Pt~~L~~q~~~ 175 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARY----------------YLENYEGKILIIVPTTALTTQMAD 175 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHH----------------HHHHCSSEEEEECSSHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHH----------------HHHcCCCeEEEEECCHHHHHHHHH
Confidence 3789999999999998888899999999999776544432 12233 37999999988
Q ss_pred hhhhcCee-------e---ecc----CCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHH
Q psy4493 94 LLKKKKIC-------L---MTE----SSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPD 159 (323)
Q Consensus 94 ~l~~~~i~-------l---~~~----~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~ 159 (323)
.+.+.+.. + ... ....+|+|+||+++..... ....+++++|+||||++.. +.
T Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~--------~~~~~~~~vIiDEaH~~~~------~~ 241 (282)
T 1rif_A 176 DFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPK--------EWFSQFGMMMNDECHLATG------KS 241 (282)
T ss_dssp HHHHHTSCCGGGEEECSTTCSSTTCCCTTCSEEEECHHHHTTSCG--------GGGGGEEEEEEETGGGCCH------HH
T ss_pred HHHHhcccccceEEEEeCCCcchhhhccCCcEEEEchHHHHhhHH--------HHHhhCCEEEEECCccCCc------cc
Confidence 33333221 1 111 1568999999999875211 1235789999999999864 12
Q ss_pred HHhHHHHHhhC-CCCCEEEEeecCChhH
Q psy4493 160 YQYLSILKTMF-PDVPILGLTATATTKV 186 (323)
Q Consensus 160 ~~~l~~l~~~~-~~~~~i~lSAT~~~~~ 186 (323)
+..+...+ +..++++||||+++..
T Consensus 242 ---~~~il~~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 242 ---ISSIISGLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp ---HHHHTTTCTTCCEEEEECSSCCTTS
T ss_pred ---HHHHHHHhhcCCeEEEEeCCCCCcc
Confidence 23333443 4789999999998654
No 91
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.52 E-value=8.2e-13 Score=124.08 Aligned_cols=60 Identities=13% Similarity=0.089 Sum_probs=35.4
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc-----------------ceeeecccccCC----ccEEEEc
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-----------------SIAFGLGIDKPN----VRFVIHH 296 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~-----------------T~~~~~Gid~~~----v~~Vi~~ 296 (323)
..+.++||++|....+.+++.|... . ...++.....+ |..+++|||+|+ +++||++
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~~--~-~~~q~~~~~~~~~l~~f~~~~~il~~V~~~~~~EGiD~~~~~~~~~~Vii~ 459 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSGI--P-VIEENKKTRHEEVLELMKTGKYLVMLVMRAKESEGVEFREKENLFESLVLA 459 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTTS--C-EEESTTTCCHHHHHHHHHTSCCEEEEEC---------------CEEEEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhccC--c-eEecCCCCcHHHHHHHHhcCCeEEEEEecCceecceecCCCcccccEEEEE
Confidence 5678999999999999999888652 2 24444432221 789999999997 8999999
Q ss_pred cCCC
Q psy4493 297 CLSK 300 (323)
Q Consensus 297 ~~p~ 300 (323)
++|.
T Consensus 460 ~lPf 463 (540)
T 2vl7_A 460 GLPY 463 (540)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9884
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.30 E-value=1.5e-10 Score=109.01 Aligned_cols=122 Identities=10% Similarity=0.045 Sum_probs=72.5
Q ss_pred CCEEEEeecCChhHHHHHHHHhCCCCcEE--E-----ecCCCCCCceeEEEe-cCCc----hhHHHHHHHHHHHh--hcC
Q psy4493 173 VPILGLTATATTKVMLDVQKMLQIEDCVV--I-----KAPFNRPNLFYEVRI-KPAA----QKDCLDELADLMSR--RFR 238 (323)
Q Consensus 173 ~~~i~lSAT~~~~~~~~i~~~l~~~~~~~--~-----~~~~~~~~~~~~~~~-~~~~----~~~~~~~l~~~l~~--~~~ 238 (323)
..+|++|||+++ .+.+.+.+|+..... + ..++ ..+....+.. .+.. .......+.+.+.+ ...
T Consensus 316 ~svIltSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~ 392 (551)
T 3crv_A 316 LSIILMSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQA 392 (551)
T ss_dssp CEEEEEESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEeeCCCc--HHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHhC
Confidence 579999999998 567788899873322 1 1123 3333333221 1110 12223344444332 125
Q ss_pred CCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCC---------CCc------c--eeeecccccC-----CccEEEEc
Q psy4493 239 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE---------SNV------S--IAFGLGIDKP-----NVRFVIHH 296 (323)
Q Consensus 239 ~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~---------~~~------T--~~~~~Gid~~-----~v~~Vi~~ 296 (323)
++.++||++|-...+.+++. .+..+..=..+++ ... + ..+.+|||+| .++.||..
T Consensus 393 ~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~ 469 (551)
T 3crv_A 393 KANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSSVEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIV 469 (551)
T ss_dssp SSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCCHHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEEE
T ss_pred CCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCCHHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEEE
Confidence 67899999999999988873 3333332222333 111 3 5899999999 48899998
Q ss_pred cCCC
Q psy4493 297 CLSK 300 (323)
Q Consensus 297 ~~p~ 300 (323)
++|.
T Consensus 470 ~lPf 473 (551)
T 3crv_A 470 GIPY 473 (551)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 8774
No 93
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.22 E-value=8.6e-06 Score=77.35 Aligned_cols=70 Identities=20% Similarity=0.121 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHH--hcCCcEEE
Q psy4493 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIA--LLKKDAII 87 (323)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~--~~~~~~lv 87 (323)
+..+.|...+....-.+.|..++..++.++.+++..++|.|||..+...+..+ ..+ ..+..+++
T Consensus 136 ~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l--------------~~~~~~~~~~vll 201 (608)
T 1w36_D 136 LLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL--------------IQMADGERCRIRL 201 (608)
T ss_dssp HHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHH--------------HHTCSSCCCCEEE
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHH--------------HHhhhcCCCeEEE
Confidence 45666666664333368899999999999999999999999997665555431 111 13457999
Q ss_pred Eccchh
Q psy4493 88 IMPTGK 93 (323)
Q Consensus 88 ~~pTgs 93 (323)
++|||.
T Consensus 202 ~APTg~ 207 (608)
T 1w36_D 202 AAPTGK 207 (608)
T ss_dssp EBSSHH
T ss_pred EeCChh
Confidence 999999
No 94
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=97.89 E-value=3.5e-05 Score=64.31 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=67.6
Q ss_pred EcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh---------hhhhcC-eeeeccCCCeeEEE
Q psy4493 44 IMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK---------LLKKKK-ICLMTESSSLKLLY 113 (323)
Q Consensus 44 ~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs---------~l~~~~-i~l~~~~~~~~vii 113 (323)
......|.+..+...+.+ +|+..|+++|.++++.+++|+++++.+|||+ .+.... -..........++|
T Consensus 29 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~li 107 (242)
T 3fe2_A 29 LNFYEANFPANVMDVIAR-QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLV 107 (242)
T ss_dssp SSTTTTTCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEE
T ss_pred CCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEE
Confidence 345678899999999998 8999999999999999999999999999999 111100 00011234567899
Q ss_pred EcccccccchhHHHHHHHHHhhCCcceEE
Q psy4493 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIA 142 (323)
Q Consensus 114 ~Tp~~l~~~~~~~~~l~~~~~~~~v~~vV 142 (323)
.+|-+.+. .+..+.++.......+....
T Consensus 108 l~Pt~~L~-~Q~~~~~~~~~~~~~~~~~~ 135 (242)
T 3fe2_A 108 LAPTRELA-QQVQQVAAEYCRACRLKSTC 135 (242)
T ss_dssp ECSSHHHH-HHHHHHHHHHHHHTTCCEEE
T ss_pred EeCcHHHH-HHHHHHHHHHHhhcCceEEE
Confidence 99988773 35555555543333444433
No 95
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.89 E-value=2.5e-05 Score=63.25 Aligned_cols=84 Identities=15% Similarity=0.099 Sum_probs=61.4
Q ss_pred CCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----eeccCCCeeEEEEcccccc
Q psy4493 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----LMTESSSLKLLYVSPEKLA 120 (323)
Q Consensus 46 ~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l~~~~~~~~vii~Tp~~l~ 120 (323)
.+.+|.++.+.+.+.+ +|+..|+++|.++++.+++++++++.+|||+ .....-+. +........++|.+|-+.+
T Consensus 5 f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 83 (206)
T 1vec_A 5 FEDYCLKRELLMGIFE-MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTREL 83 (206)
T ss_dssp GGGSCCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHH
T ss_pred hhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHH
Confidence 4567888999999988 8999999999999999999999999999999 00000001 1222345679999998776
Q ss_pred cchhHHHHHHH
Q psy4493 121 KSKSFMTKLQK 131 (323)
Q Consensus 121 ~~~~~~~~l~~ 131 (323)
. .++...++.
T Consensus 84 ~-~q~~~~~~~ 93 (206)
T 1vec_A 84 A-LQVSQICIQ 93 (206)
T ss_dssp H-HHHHHHHHH
T ss_pred H-HHHHHHHHH
Confidence 3 344444444
No 96
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.89 E-value=3.4e-05 Score=64.73 Aligned_cols=96 Identities=17% Similarity=0.128 Sum_probs=66.5
Q ss_pred cCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----eeccCCCeeEEEEccccc
Q psy4493 45 MPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----LMTESSSLKLLYVSPEKL 119 (323)
Q Consensus 45 ~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l~~~~~~~~vii~Tp~~l 119 (323)
..+.+|.+..+.+.+.+ +|+..|+++|.++++.+++++++++.+|||+ ......+. +........++|.+|-+.
T Consensus 44 ~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~ 122 (249)
T 3ber_A 44 TFKDLGVTDVLCEACDQ-LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRE 122 (249)
T ss_dssp CTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHH
T ss_pred CHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHH
Confidence 36678899999999988 9999999999999999999999999999999 11100011 112233567999999887
Q ss_pred ccchhHHHHHHHHHhhCCcceEE
Q psy4493 120 AKSKSFMTKLQKMYKAGCLARIA 142 (323)
Q Consensus 120 ~~~~~~~~~l~~~~~~~~v~~vV 142 (323)
+. .++.+.++.......++..+
T Consensus 123 L~-~q~~~~~~~~~~~~~~~~~~ 144 (249)
T 3ber_A 123 LA-FQISEQFEALGSSIGVQSAV 144 (249)
T ss_dssp HH-HHHHHHHHHHHGGGTCCEEE
T ss_pred HH-HHHHHHHHHHhccCCeeEEE
Confidence 63 34555555543222344433
No 97
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.86 E-value=6e-05 Score=61.75 Aligned_cols=84 Identities=14% Similarity=0.127 Sum_probs=61.7
Q ss_pred CCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----eeccCCCeeEEEEcccccc
Q psy4493 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----LMTESSSLKLLYVSPEKLA 120 (323)
Q Consensus 46 ~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l~~~~~~~~vii~Tp~~l~ 120 (323)
.+.+|.++.+.+.+.+ +|+..|+++|.++++.+++++++++.+|||+ ......+. +........++|.+|-+.+
T Consensus 6 f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L 84 (219)
T 1q0u_A 6 FTRFPFQPFIIEAIKT-LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTREL 84 (219)
T ss_dssp GGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred HhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHH
Confidence 5567889999999988 8999999999999999999999999999999 11110011 1222345689999998776
Q ss_pred cchhHHHHHHH
Q psy4493 121 KSKSFMTKLQK 131 (323)
Q Consensus 121 ~~~~~~~~l~~ 131 (323)
. .++.+.++.
T Consensus 85 ~-~q~~~~~~~ 94 (219)
T 1q0u_A 85 A-TQIYHETLK 94 (219)
T ss_dssp H-HHHHHHHHH
T ss_pred H-HHHHHHHHH
Confidence 3 344444444
No 98
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.86 E-value=4.1e-05 Score=62.74 Aligned_cols=85 Identities=11% Similarity=0.070 Sum_probs=62.6
Q ss_pred cCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----eeccCCCeeEEEEccccc
Q psy4493 45 MPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----LMTESSSLKLLYVSPEKL 119 (323)
Q Consensus 45 ~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l~~~~~~~~vii~Tp~~l 119 (323)
....+|.++.+.+.+.+ +|+..|+++|.++++.+++++++++.+|||+ .....-+. +........++|.+|-+.
T Consensus 15 ~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 93 (220)
T 1t6n_A 15 GFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 93 (220)
T ss_dssp CSTTSCCCHHHHHHHHH-TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHH
Confidence 36788999999999988 8999999999999999999999999999999 10000000 122234558999999877
Q ss_pred ccchhHHHHHHH
Q psy4493 120 AKSKSFMTKLQK 131 (323)
Q Consensus 120 ~~~~~~~~~l~~ 131 (323)
+. .++.+.++.
T Consensus 94 L~-~q~~~~~~~ 104 (220)
T 1t6n_A 94 LA-FQISKEYER 104 (220)
T ss_dssp HH-HHHHHHHHH
T ss_pred HH-HHHHHHHHH
Confidence 63 344444444
No 99
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.82 E-value=5.1e-05 Score=62.34 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=63.8
Q ss_pred EcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----eeccCCCeeEEEEcccc
Q psy4493 44 IMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----LMTESSSLKLLYVSPEK 118 (323)
Q Consensus 44 ~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l~~~~~~~~vii~Tp~~ 118 (323)
.....+|.++.+.+.+.. +|+..|+++|.++++.+++++++++.+|||+ ......+. +........++|.+|-+
T Consensus 14 ~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 92 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTR 92 (224)
T ss_dssp CCGGGGTCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCH
Confidence 446678899999999988 8999999999999999999999999999999 11110011 12223456899999987
Q ss_pred cccchhHHHHHHHH
Q psy4493 119 LAKSKSFMTKLQKM 132 (323)
Q Consensus 119 l~~~~~~~~~l~~~ 132 (323)
.+. .++...++..
T Consensus 93 ~L~-~q~~~~~~~~ 105 (224)
T 1qde_A 93 ELA-LQIQKVVMAL 105 (224)
T ss_dssp HHH-HHHHHHHHHH
T ss_pred HHH-HHHHHHHHHH
Confidence 763 3455555543
No 100
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.82 E-value=4.9e-05 Score=63.18 Aligned_cols=87 Identities=14% Similarity=0.090 Sum_probs=64.0
Q ss_pred EcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----eeccCCCeeEEEEcccc
Q psy4493 44 IMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----LMTESSSLKLLYVSPEK 118 (323)
Q Consensus 44 ~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l~~~~~~~~vii~Tp~~ 118 (323)
.....+|.++.+.+++.+ +|+..|+++|.++++.+++++++++.+|||+ .....-+. +........++|.+|-+
T Consensus 30 ~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~ 108 (237)
T 3bor_A 30 DNFDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTR 108 (237)
T ss_dssp CSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcH
Confidence 446788899999999987 8999999999999999999999999999999 11111011 12223456899999987
Q ss_pred cccchhHHHHHHHH
Q psy4493 119 LAKSKSFMTKLQKM 132 (323)
Q Consensus 119 l~~~~~~~~~l~~~ 132 (323)
.+ ..++...++..
T Consensus 109 ~L-~~q~~~~~~~~ 121 (237)
T 3bor_A 109 EL-AQQIQKVILAL 121 (237)
T ss_dssp HH-HHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHH
Confidence 76 33455555543
No 101
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.76 E-value=8.6e-05 Score=61.35 Aligned_cols=85 Identities=19% Similarity=0.137 Sum_probs=62.3
Q ss_pred cCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----eeccCCCeeEEEEccccc
Q psy4493 45 MPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----LMTESSSLKLLYVSPEKL 119 (323)
Q Consensus 45 ~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l~~~~~~~~vii~Tp~~l 119 (323)
....+|.+..+...+.+ +|+..|+++|.++++.+++++++++.+|||+ ......+. +........++|.+|-+-
T Consensus 25 ~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~ 103 (230)
T 2oxc_A 25 DFESLLLSRPVLEGLRA-AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTRE 103 (230)
T ss_dssp CGGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHH
Confidence 35667888999999988 8999999999999999999999999999999 11110011 122234568999999876
Q ss_pred ccchhHHHHHHH
Q psy4493 120 AKSKSFMTKLQK 131 (323)
Q Consensus 120 ~~~~~~~~~l~~ 131 (323)
+. .++.+.++.
T Consensus 104 L~-~q~~~~~~~ 114 (230)
T 2oxc_A 104 IA-VQIHSVITA 114 (230)
T ss_dssp HH-HHHHHHHHH
T ss_pred HH-HHHHHHHHH
Confidence 63 345555554
No 102
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.76 E-value=7.6e-05 Score=61.89 Aligned_cols=86 Identities=23% Similarity=0.220 Sum_probs=62.5
Q ss_pred cCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----e----eccCCCeeEEEEc
Q psy4493 45 MPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----L----MTESSSLKLLYVS 115 (323)
Q Consensus 45 ~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l----~~~~~~~~vii~T 115 (323)
....+|.+..+...+.. +|+..|+++|.++++.+++++++++.+|||+ .....-+. + ........++|.+
T Consensus 26 ~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~ 104 (236)
T 2pl3_A 26 RFSDFPLSKKTLKGLQE-AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIIS 104 (236)
T ss_dssp BGGGSCCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEEC
T ss_pred CHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEe
Confidence 36678899999999988 8999999999999999999999999999999 00000000 0 0113356789999
Q ss_pred ccccccchhHHHHHHHH
Q psy4493 116 PEKLAKSKSFMTKLQKM 132 (323)
Q Consensus 116 p~~l~~~~~~~~~l~~~ 132 (323)
|-+.+. .++...++..
T Consensus 105 Pt~~L~-~q~~~~~~~~ 120 (236)
T 2pl3_A 105 PTRELA-YQTFEVLRKV 120 (236)
T ss_dssp SSHHHH-HHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHHH
Confidence 987763 3455555543
No 103
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.74 E-value=5.9e-05 Score=62.92 Aligned_cols=81 Identities=20% Similarity=0.241 Sum_probs=58.5
Q ss_pred CchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----e-eccCCCeeEEEEcccccccch
Q psy4493 50 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----L-MTESSSLKLLYVSPEKLAKSK 123 (323)
Q Consensus 50 gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l-~~~~~~~~vii~Tp~~l~~~~ 123 (323)
|.+..+.+.+.+ +|+..|+++|.++++.+++++++++.+|||+ ......+. + ........++|.+|-+.+. .
T Consensus 35 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~-~ 112 (245)
T 3dkp_A 35 KINSRLLQNILD-AGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELA-S 112 (245)
T ss_dssp CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHH-H
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHH-H
Confidence 677888888888 8999999999999999999999999999999 11100011 1 1123456799999998773 3
Q ss_pred hHHHHHHHH
Q psy4493 124 SFMTKLQKM 132 (323)
Q Consensus 124 ~~~~~l~~~ 132 (323)
++...++..
T Consensus 113 q~~~~~~~~ 121 (245)
T 3dkp_A 113 QIHRELIKI 121 (245)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444455443
No 104
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.70 E-value=9.1e-05 Score=61.06 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=57.3
Q ss_pred CCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh---------hhhhcCee-e-eccCCCeeEEEEccc
Q psy4493 49 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK---------LLKKKKIC-L-MTESSSLKLLYVSPE 117 (323)
Q Consensus 49 ~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs---------~l~~~~i~-l-~~~~~~~~vii~Tp~ 117 (323)
+|....+.+++.+ +|+..|+++|.++++.+++++++++.+|||+ .+....-. . ........++|.+|-
T Consensus 25 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt 103 (228)
T 3iuy_A 25 FQQYPDLLKSIIR-VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPT 103 (228)
T ss_dssp HTTCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSS
T ss_pred hccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCC
Confidence 4666788889988 7999999999999999999999999999999 11111100 0 112355678999998
Q ss_pred ccccchhHHHHHHH
Q psy4493 118 KLAKSKSFMTKLQK 131 (323)
Q Consensus 118 ~l~~~~~~~~~l~~ 131 (323)
+.+. .++.+.++.
T Consensus 104 ~~L~-~q~~~~~~~ 116 (228)
T 3iuy_A 104 RELA-LHVEAECSK 116 (228)
T ss_dssp HHHH-HHHHHHHHH
T ss_pred HHHH-HHHHHHHHH
Confidence 8763 344444444
No 105
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.69 E-value=0.0003 Score=64.45 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=43.1
Q ss_pred cCCCCCChhHHHHHHHHhcC----C-CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCC-cEEEEccch
Q psy4493 19 FNLTDFRPNQLAAINIALLK----K-DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKK-DAIIIMPTG 92 (323)
Q Consensus 19 ~~~~~~~~~Q~~~~~~~~~~----~-~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~-~~lv~~pTg 92 (323)
..+..+.+.|.+++..+... + .+++.++.|+|||..+...+..+ ...+. .+++++||+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l----------------~~~~~~~il~~a~T~ 84 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEAL----------------ISTGETGIILAAPTH 84 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHH----------------HHTTCCCEEEEESSH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHH----------------HhcCCceEEEecCcH
Confidence 45788899999999876432 3 68888899999996654444331 12343 799999999
Q ss_pred hh
Q psy4493 93 KL 94 (323)
Q Consensus 93 s~ 94 (323)
..
T Consensus 85 ~A 86 (459)
T 3upu_A 85 AA 86 (459)
T ss_dssp HH
T ss_pred HH
Confidence 83
No 106
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.68 E-value=9.7e-05 Score=59.76 Aligned_cols=84 Identities=24% Similarity=0.236 Sum_probs=61.1
Q ss_pred CCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----e---eccCCCeeEEEEccc
Q psy4493 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----L---MTESSSLKLLYVSPE 117 (323)
Q Consensus 46 ~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l---~~~~~~~~vii~Tp~ 117 (323)
.+.+|.++.+.+.+.+ +|+..|+++|.++++.+++++++++.+|||+ ......+. + ........++|.+|-
T Consensus 3 f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 3 FKDFPLKPEILEALHG-RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp GGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred hhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 4567888999999988 8999999999999999999999999999999 11000000 1 112345689999998
Q ss_pred ccccchhHHHHHHH
Q psy4493 118 KLAKSKSFMTKLQK 131 (323)
Q Consensus 118 ~l~~~~~~~~~l~~ 131 (323)
+.+ ..++.+.++.
T Consensus 82 ~~L-~~q~~~~~~~ 94 (207)
T 2gxq_A 82 REL-ALQVASELTA 94 (207)
T ss_dssp HHH-HHHHHHHHHH
T ss_pred HHH-HHHHHHHHHH
Confidence 766 2345455544
No 107
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.67 E-value=0.00013 Score=68.98 Aligned_cols=82 Identities=30% Similarity=0.550 Sum_probs=60.6
Q ss_pred CCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--hhhhcCeeeeccCCCeeEEEEcccccccch
Q psy4493 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--LLKKKKICLMTESSSLKLLYVSPEKLAKSK 123 (323)
Q Consensus 46 ~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l~~~~i~l~~~~~~~~vii~Tp~~l~~~~ 123 (323)
...++++..+...|++.||+..|+|+|.++|+.+++|+++++++|||+ .+. ..++.. .....++|.+|-+.+ ..
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~-~~lpal--~~~g~~lVisP~~~L-~~ 98 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLC-YQLPAL--CSDGFTLVICPLISL-ME 98 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHH-HHHHHH--TSSSEEEEECSCHHH-HH
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHH-HHHHHH--HcCCcEEEEeCHHHH-HH
Confidence 346889999999999999999999999999999999999999999999 110 001100 113378889998776 33
Q ss_pred hHHHHHHH
Q psy4493 124 SFMTKLQK 131 (323)
Q Consensus 124 ~~~~~l~~ 131 (323)
.+...++.
T Consensus 99 q~~~~l~~ 106 (591)
T 2v1x_A 99 DQLMVLKQ 106 (591)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444444
No 108
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=97.67 E-value=8e-05 Score=67.80 Aligned_cols=86 Identities=16% Similarity=0.094 Sum_probs=63.3
Q ss_pred cCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----e-----eccCCCeeEEEE
Q psy4493 45 MPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----L-----MTESSSLKLLYV 114 (323)
Q Consensus 45 ~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l-----~~~~~~~~vii~ 114 (323)
..+..|.+..+.+.+.+ +|+..|+++|.++++.+++|+++++++|||+ .....-+. + ........++|.
T Consensus 57 ~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil 135 (434)
T 2db3_A 57 HFTSADLRDIIIDNVNK-SGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIV 135 (434)
T ss_dssp CGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEE
T ss_pred ChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEE
Confidence 35567888999999988 8999999999999999999999999999999 11111111 0 112345689999
Q ss_pred cccccccchhHHHHHHHH
Q psy4493 115 SPEKLAKSKSFMTKLQKM 132 (323)
Q Consensus 115 Tp~~l~~~~~~~~~l~~~ 132 (323)
+|-+-+. .++.+.++..
T Consensus 136 ~PtreLa-~Q~~~~~~~~ 152 (434)
T 2db3_A 136 SPTRELA-IQIFNEARKF 152 (434)
T ss_dssp CSSHHHH-HHHHHHHHHH
T ss_pred ecCHHHH-HHHHHHHHHH
Confidence 9998763 3555555554
No 109
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=97.62 E-value=0.00012 Score=63.16 Aligned_cols=84 Identities=10% Similarity=0.037 Sum_probs=61.1
Q ss_pred CCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC--CcEEEEccchh-hhhhcCee----eeccCCCeeEEEEcccc
Q psy4493 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK--KDAIIIMPTGK-LLKKKKIC----LMTESSSLKLLYVSPEK 118 (323)
Q Consensus 46 ~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~--~~~lv~~pTgs-~l~~~~i~----l~~~~~~~~vii~Tp~~ 118 (323)
...+|.+..+...|.. +||..|+++|.++++.++.+ +++++++|||+ ......+. +......+.++|.+|.+
T Consensus 94 f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~Ptr 172 (300)
T 3fmo_B 94 FEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTY 172 (300)
T ss_dssp SGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred HhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcH
Confidence 3457788999999988 89999999999999999987 99999999999 11111111 12234456799999998
Q ss_pred cccchhHHHHHHH
Q psy4493 119 LAKSKSFMTKLQK 131 (323)
Q Consensus 119 l~~~~~~~~~l~~ 131 (323)
-+. .+....++.
T Consensus 173 eLa-~Q~~~~~~~ 184 (300)
T 3fmo_B 173 ELA-LQTGKVIEQ 184 (300)
T ss_dssp HHH-HHHHHHHHH
T ss_pred HHH-HHHHHHHHH
Confidence 873 344444444
No 110
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.57 E-value=7.1e-05 Score=62.80 Aligned_cols=85 Identities=16% Similarity=0.211 Sum_probs=59.0
Q ss_pred CCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh---------hhh---hcCee--eeccCCCeeE
Q psy4493 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK---------LLK---KKKIC--LMTESSSLKL 111 (323)
Q Consensus 46 ~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs---------~l~---~~~i~--l~~~~~~~~v 111 (323)
...+|.+..+.+++.. +|+..|+++|.++++.+++++++++.+|||+ .+. ..+.. -........+
T Consensus 25 f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 103 (253)
T 1wrb_A 25 FDELKLDPTIRNNILL-ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKC 103 (253)
T ss_dssp SGGGSCCCSTTTTTTT-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSE
T ss_pred HhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceE
Confidence 4455677777777776 8999999999999999999999999999999 111 11100 0011234689
Q ss_pred EEEcccccccchhHHHHHHHH
Q psy4493 112 LYVSPEKLAKSKSFMTKLQKM 132 (323)
Q Consensus 112 ii~Tp~~l~~~~~~~~~l~~~ 132 (323)
+|.+|-+.+ ..++.+.++..
T Consensus 104 lil~Pt~~L-~~q~~~~~~~~ 123 (253)
T 1wrb_A 104 LILAPTREL-AIQILSESQKF 123 (253)
T ss_dssp EEECSSHHH-HHHHHHHHHHH
T ss_pred EEEECCHHH-HHHHHHHHHHH
Confidence 999998776 34555555554
No 111
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.56 E-value=9.2e-05 Score=70.92 Aligned_cols=56 Identities=21% Similarity=0.186 Sum_probs=44.4
Q ss_pred CCCChhHHHHHHHHhcCCC-eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 22 TDFRPNQLAAINIALLKKD-AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~-~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
..+.+.|.+|+..++..++ .++..|+|.|||..+...+... +.+++.+++++||..
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l----------------~~~~~~ILv~a~TN~ 244 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQA----------------VKQGLKVLCCAPSNI 244 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHH----------------HHTTCCEEEEESSHH
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHH----------------HhCCCeEEEEcCchH
Confidence 4567899999999987766 5566799999998877766441 346788999999998
No 112
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.56 E-value=0.00019 Score=63.92 Aligned_cols=87 Identities=11% Similarity=0.133 Sum_probs=64.2
Q ss_pred EcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC--CcEEEEccchh--hhhhc--Cee-eeccCCCeeEEEEcc
Q psy4493 44 IMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK--KDAIIIMPTGK--LLKKK--KIC-LMTESSSLKLLYVSP 116 (323)
Q Consensus 44 ~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~--~~~lv~~pTgs--~l~~~--~i~-l~~~~~~~~vii~Tp 116 (323)
.....+|.+..+.+.+.+ +|+..|+++|.++++.++++ +++++.+|||+ .+... -.. +........++|.+|
T Consensus 5 ~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 83 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAP 83 (395)
T ss_dssp CSSTTSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred cCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECC
Confidence 346788999999999998 89999999999999999998 89999999999 11100 000 122234568999999
Q ss_pred cccccchhHHHHHHHH
Q psy4493 117 EKLAKSKSFMTKLQKM 132 (323)
Q Consensus 117 ~~l~~~~~~~~~l~~~ 132 (323)
-+.+ ..++...++..
T Consensus 84 ~~~L-~~q~~~~~~~~ 98 (395)
T 3pey_A 84 SREL-ARQTLEVVQEM 98 (395)
T ss_dssp SHHH-HHHHHHHHHHH
T ss_pred CHHH-HHHHHHHHHHH
Confidence 8876 34555555553
No 113
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=97.49 E-value=0.00025 Score=63.75 Aligned_cols=86 Identities=13% Similarity=0.110 Sum_probs=63.0
Q ss_pred cCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----eeccCCCeeEEEEccccc
Q psy4493 45 MPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----LMTESSSLKLLYVSPEKL 119 (323)
Q Consensus 45 ~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l~~~~~~~~vii~Tp~~l 119 (323)
....+|.++.+...+.+ +|+..|+++|.++++.+++++++++.+|||+ .....-+. +........++|.+|-+.
T Consensus 38 ~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~ 116 (410)
T 2j0s_A 38 TFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRE 116 (410)
T ss_dssp SGGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHH
T ss_pred CHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHH
Confidence 35677888999999988 8999999999999999999999999999999 11000011 122234568999999886
Q ss_pred ccchhHHHHHHHH
Q psy4493 120 AKSKSFMTKLQKM 132 (323)
Q Consensus 120 ~~~~~~~~~l~~~ 132 (323)
+ ..++...++..
T Consensus 117 L-~~q~~~~~~~~ 128 (410)
T 2j0s_A 117 L-AVQIQKGLLAL 128 (410)
T ss_dssp H-HHHHHHHHHHH
T ss_pred H-HHHHHHHHHHH
Confidence 6 33555555543
No 114
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.48 E-value=0.00023 Score=60.13 Aligned_cols=80 Identities=16% Similarity=0.173 Sum_probs=57.5
Q ss_pred chHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----e----eccCCCeeEEEEccccccc
Q psy4493 51 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----L----MTESSSLKLLYVSPEKLAK 121 (323)
Q Consensus 51 kt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l----~~~~~~~~vii~Tp~~l~~ 121 (323)
.++.+...+.+ +|+..|+++|.++++.+++++++++++|||+ ......+. + ........++|.+|-+.+.
T Consensus 61 l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La 139 (262)
T 3ly5_A 61 VNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELA 139 (262)
T ss_dssp CCHHHHHHHHH-TTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHH
T ss_pred cCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHH
Confidence 67888999988 9999999999999999999999999999999 00000000 0 0112356789999988773
Q ss_pred chhHHHHHHHH
Q psy4493 122 SKSFMTKLQKM 132 (323)
Q Consensus 122 ~~~~~~~l~~~ 132 (323)
.+....++..
T Consensus 140 -~q~~~~~~~~ 149 (262)
T 3ly5_A 140 -MQTFGVLKEL 149 (262)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 3444455543
No 115
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=97.47 E-value=0.00018 Score=64.51 Aligned_cols=85 Identities=12% Similarity=0.104 Sum_probs=62.6
Q ss_pred CCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--hhhhc--Cee-eeccCCCeeEEEEcccccc
Q psy4493 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--LLKKK--KIC-LMTESSSLKLLYVSPEKLA 120 (323)
Q Consensus 46 ~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l~~~--~i~-l~~~~~~~~vii~Tp~~l~ 120 (323)
...+|.+..+.+.+.+ +|+..|+++|.++++.+++++++++.+|||+ .+... -.. +........++|.+|-+.+
T Consensus 23 f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 101 (400)
T 1s2m_A 23 FEDFYLKRELLMGIFE-AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTREL 101 (400)
T ss_dssp GGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred hhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHH
Confidence 5677888999999988 8999999999999999999999999999999 11000 000 1222345679999998776
Q ss_pred cchhHHHHHHHH
Q psy4493 121 KSKSFMTKLQKM 132 (323)
Q Consensus 121 ~~~~~~~~l~~~ 132 (323)
. .++...++..
T Consensus 102 ~-~q~~~~~~~~ 112 (400)
T 1s2m_A 102 A-LQTSQVVRTL 112 (400)
T ss_dssp H-HHHHHHHHHH
T ss_pred H-HHHHHHHHHH
Confidence 3 3555555553
No 116
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.46 E-value=7.1e-05 Score=70.45 Aligned_cols=58 Identities=14% Similarity=0.093 Sum_probs=45.0
Q ss_pred CCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchhhh
Q psy4493 22 TDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLL 95 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs~l 95 (323)
..+.+.|..++..+..++.+++..|.|.|||..+...+..+ ...+..+++++|||...
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l----------------~~~g~~Vl~~ApT~~Aa 245 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLA----------------ESLGLEVGLCAPTGKAA 245 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHH----------------HHTTCCEEEEESSHHHH
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHH----------------HhcCCeEEEecCcHHHH
Confidence 34678999999999888888889999999997655544321 12578899999999833
No 117
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=97.42 E-value=0.00032 Score=63.10 Aligned_cols=95 Identities=17% Similarity=0.107 Sum_probs=65.2
Q ss_pred cCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh---------hhh---hcCee--e--------
Q psy4493 45 MPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK---------LLK---KKKIC--L-------- 102 (323)
Q Consensus 45 ~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs---------~l~---~~~i~--l-------- 102 (323)
....+|.++.+.+++.. +|+..|+++|.++++.+++++++++.+|||+ .+. ..+.. +
T Consensus 16 ~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 94 (417)
T 2i4i_A 16 SFSDVEMGEIIMGNIEL-TRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGR 94 (417)
T ss_dssp SGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBT
T ss_pred CHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccc
Confidence 35677889999999987 8999999999999999999999999999999 111 10000 0
Q ss_pred -eccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceE
Q psy4493 103 -MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARI 141 (323)
Q Consensus 103 -~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~v 141 (323)
........++|.+|-+.+ ..++.+.++.......++..
T Consensus 95 ~~~~~~~~~~lil~Pt~~L-~~q~~~~~~~~~~~~~~~~~ 133 (417)
T 2i4i_A 95 YGRRKQYPISLVLAPTREL-AVQIYEEARKFSYRSRVRPC 133 (417)
T ss_dssp TBSCSBCCSEEEECSSHHH-HHHHHHHHHHHHTTSSCCEE
T ss_pred cccccCCccEEEECCcHHH-HHHHHHHHHHHhCcCCceEE
Confidence 001123579999998876 34555555554332334433
No 118
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=97.41 E-value=0.0003 Score=62.69 Aligned_cols=87 Identities=11% Similarity=0.093 Sum_probs=64.0
Q ss_pred EcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----eeccCCCeeEEEEcccc
Q psy4493 44 IMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----LMTESSSLKLLYVSPEK 118 (323)
Q Consensus 44 ~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l~~~~~~~~vii~Tp~~ 118 (323)
......|.+..+.+.+.. +|+..|+++|.++++.+++++++++.+|||+ ......+. +........++|.+|-+
T Consensus 21 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 99 (394)
T 1fuu_A 21 YKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTR 99 (394)
T ss_dssp CSSGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred CChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCH
Confidence 446778899999999988 8999999999999999999999999999999 11000011 12233456899999987
Q ss_pred cccchhHHHHHHHH
Q psy4493 119 LAKSKSFMTKLQKM 132 (323)
Q Consensus 119 l~~~~~~~~~l~~~ 132 (323)
.+ ..++...+...
T Consensus 100 ~L-~~q~~~~~~~~ 112 (394)
T 1fuu_A 100 EL-ALQIQKVVMAL 112 (394)
T ss_dssp HH-HHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHH
Confidence 66 33455555543
No 119
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=97.38 E-value=0.00023 Score=63.42 Aligned_cols=84 Identities=11% Similarity=0.085 Sum_probs=61.4
Q ss_pred CCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--hhhhc--Cee-eeccCCCeeEEEEcccccc
Q psy4493 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--LLKKK--KIC-LMTESSSLKLLYVSPEKLA 120 (323)
Q Consensus 46 ~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l~~~--~i~-l~~~~~~~~vii~Tp~~l~ 120 (323)
...++.+..+.++|.+ +|+..|+++|.++++.+++++++++.+|||+ .+... -.. +........++|.+|-+.+
T Consensus 10 f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L 88 (391)
T 1xti_A 10 FRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTREL 88 (391)
T ss_dssp GGGGCCCHHHHHHHHH-HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHH
T ss_pred hhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHH
Confidence 4567788999999988 8999999999999999999999999999999 11100 000 1222345689999998766
Q ss_pred cchhHHHHHHH
Q psy4493 121 KSKSFMTKLQK 131 (323)
Q Consensus 121 ~~~~~~~~l~~ 131 (323)
..++...++.
T Consensus 89 -~~q~~~~~~~ 98 (391)
T 1xti_A 89 -AFQISKEYER 98 (391)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 3344455544
No 120
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.32 E-value=0.00067 Score=64.46 Aligned_cols=119 Identities=13% Similarity=0.155 Sum_probs=63.3
Q ss_pred CEEEEeecCChhHHHHHHHHhCCCCcEEEec--CCCCCCceeEEEe-cCC----chhHHHHH----HHHHHHhhcCCCcE
Q psy4493 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKA--PFNRPNLFYEVRI-KPA----AQKDCLDE----LADLMSRRFRNQSG 242 (323)
Q Consensus 174 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~----~~~~~~~~----l~~~l~~~~~~~~~ 242 (323)
.+|++|||+++ .+.+.+.+|+. ...+.. +++..+....+.. .+. ........ +.+++.. .++.+
T Consensus 377 ~~il~SaTL~p--~~~~~~~lGl~-~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~--~~g~~ 451 (620)
T 4a15_A 377 KTIHMSGTLDP--FDFYSDITGFE-IPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILK--VKKNT 451 (620)
T ss_dssp EEEEEESSCCS--HHHHHHHHCCC-CCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHH--HCSCE
T ss_pred eEEEEccCCCc--HHHHHHHhCCC-ceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHh--CCCCE
Confidence 45899999998 56778889987 433332 3333343322221 111 11122233 3344432 45679
Q ss_pred EEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCC-----------c------c--eeeecccccCC--ccEEEEccCCC
Q psy4493 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESN-----------V------S--IAFGLGIDKPN--VRFVIHHCLSK 300 (323)
Q Consensus 243 iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~-----------~------T--~~~~~Gid~~~--v~~Vi~~~~p~ 300 (323)
+||++|....+.+++.|+..+ .. ...+++.. + + ..+++|||+|+ +++||..++|.
T Consensus 452 lvlF~Sy~~l~~v~~~l~~~~--~~-~~q~~~~~~~~~ll~~f~~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPf 527 (620)
T 4a15_A 452 IVYFPSYSLMDRVENRVSFEH--MK-EYRGIDQKELYSMLKKFRRDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPF 527 (620)
T ss_dssp EEEESCHHHHHHHTSSCCSCC--EE-CCTTCCSHHHHHHHHHHTTSCCEEEEETTSCC--------CCCCEEEESSCCC
T ss_pred EEEeCCHHHHHHHHHHHHhcc--hh-ccCCCChhHHHHHHHHhccCCcEEEEEecCceeccccCCCCceEEEEEEcCCC
Confidence 999999999999988876211 11 22222211 1 3 48999999986 77999999874
No 121
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.30 E-value=0.00099 Score=63.46 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=44.0
Q ss_pred CCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHh-cCCcEEEEccchh
Q psy4493 22 TDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIAL-LKKDAIIIMPTGK 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~~pTgs 93 (323)
..+.+.|..++..++.+...++..|+|.|||..+...+... +. .++.+++++||+.
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l----------------~~~~~~~ilv~a~tn~ 235 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHL----------------ARQGNGPVLVCAPSNI 235 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHH----------------HTSSSCCEEEEESSHH
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHH----------------HHcCCCeEEEEeCcHH
Confidence 45778999999998877777888999999998766655431 11 4678999999999
No 122
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.30 E-value=0.0003 Score=61.94 Aligned_cols=93 Identities=13% Similarity=0.160 Sum_probs=64.7
Q ss_pred CCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC-CcEEEEccchh--hhhhc--CeeeeccCCCeeEEEEcccccc
Q psy4493 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK-KDAIIIMPTGK--LLKKK--KICLMTESSSLKLLYVSPEKLA 120 (323)
Q Consensus 46 ~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~~pTgs--~l~~~--~i~l~~~~~~~~vii~Tp~~l~ 120 (323)
...+|.+..+...+.+ +|+..|+++|.++++.++++ +++++.+|||+ .+... -...........++|.+|-+.+
T Consensus 8 f~~~~l~~~~~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L 86 (367)
T 1hv8_A 8 FNELNLSDNILNAIRN-KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTREL 86 (367)
T ss_dssp GGGSSCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHH
T ss_pred hhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHH
Confidence 4567889999999998 89999999999999999988 79999999999 11100 0001112345689999998776
Q ss_pred cchhHHHHHHHHHhhCCcce
Q psy4493 121 KSKSFMTKLQKMYKAGCLAR 140 (323)
Q Consensus 121 ~~~~~~~~l~~~~~~~~v~~ 140 (323)
..++.+.+........+..
T Consensus 87 -~~q~~~~~~~~~~~~~~~v 105 (367)
T 1hv8_A 87 -AIQVADEIESLKGNKNLKI 105 (367)
T ss_dssp -HHHHHHHHHHHHCSSCCCE
T ss_pred -HHHHHHHHHHHhCCCCceE
Confidence 3455555655433333433
No 123
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=97.29 E-value=0.00027 Score=65.94 Aligned_cols=82 Identities=26% Similarity=0.306 Sum_probs=59.0
Q ss_pred CCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCeeeeccCCCeeEEEEcccccccchh
Q psy4493 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKICLMTESSSLKLLYVSPEKLAKSKS 124 (323)
Q Consensus 46 ~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~l~~~~~~~~vii~Tp~~l~~~~~ 124 (323)
.+..|.+..+...+++.||+..|+++|.++++.+++|+++++++|||+ .-...-++.... ...++|.+|-+.+. ..
T Consensus 4 fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--~g~~lvi~P~~aL~-~q 80 (523)
T 1oyw_A 4 AEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL--NGLTVVVSPLISLM-KD 80 (523)
T ss_dssp CCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS--SSEEEEECSCHHHH-HH
T ss_pred hhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh--CCCEEEECChHHHH-HH
Confidence 567888999999999999999999999999999999999999999999 111000110001 23578888877663 33
Q ss_pred HHHHHH
Q psy4493 125 FMTKLQ 130 (323)
Q Consensus 125 ~~~~l~ 130 (323)
+...++
T Consensus 81 ~~~~l~ 86 (523)
T 1oyw_A 81 QVDQLQ 86 (523)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333443
No 124
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=97.29 E-value=0.00068 Score=58.92 Aligned_cols=76 Identities=16% Similarity=0.358 Sum_probs=54.0
Q ss_pred hHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--hhhhcCeeeeccCCCeeEEEEcccccccchhHHHHH
Q psy4493 52 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--LLKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKL 129 (323)
Q Consensus 52 t~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l~~~~i~l~~~~~~~~vii~Tp~~l~~~~~~~~~l 129 (323)
++.+.+++++ +|+..|+++|.++++.+++++++++.+|||+ .+... ..+. .....++|.+|-+.+ ..++...+
T Consensus 2 ~~~i~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~-~~~~--~~~~~~liv~P~~~L-~~q~~~~~ 76 (337)
T 2z0m_A 2 NEKIEQAIRE-MGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYA-IPIL--ELGMKSLVVTPTREL-TRQVASHI 76 (337)
T ss_dssp CHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH-HHHH--HHTCCEEEECSSHHH-HHHHHHHH
T ss_pred CHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHH-HHHH--hhcCCEEEEeCCHHH-HHHHHHHH
Confidence 3567788887 9999999999999999999999999999999 11100 0000 113468888998766 33555555
Q ss_pred HHH
Q psy4493 130 QKM 132 (323)
Q Consensus 130 ~~~ 132 (323)
+..
T Consensus 77 ~~~ 79 (337)
T 2z0m_A 77 RDI 79 (337)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 125
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=97.27 E-value=0.00053 Score=61.48 Aligned_cols=86 Identities=9% Similarity=0.023 Sum_probs=62.7
Q ss_pred EcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC--CcEEEEccchh-hhhhcCee----eeccCCCeeEEEEcc
Q psy4493 44 IMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK--KDAIIIMPTGK-LLKKKKIC----LMTESSSLKLLYVSP 116 (323)
Q Consensus 44 ~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~--~~~lv~~pTgs-~l~~~~i~----l~~~~~~~~vii~Tp 116 (323)
...+..|.+..+.+.+.+ +|+..|+++|.++++.++++ +++++.+|||+ .....-+. +........++|.+|
T Consensus 25 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 103 (412)
T 3fht_A 25 KSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 103 (412)
T ss_dssp SCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECC
Confidence 346778999999999998 89999999999999999987 89999999999 11000001 122334558999999
Q ss_pred cccccchhHHHHHHH
Q psy4493 117 EKLAKSKSFMTKLQK 131 (323)
Q Consensus 117 ~~l~~~~~~~~~l~~ 131 (323)
.+.+. .++...++.
T Consensus 104 ~~~L~-~q~~~~~~~ 117 (412)
T 3fht_A 104 TYELA-LQTGKVIEQ 117 (412)
T ss_dssp SHHHH-HHHHHHHHH
T ss_pred CHHHH-HHHHHHHHH
Confidence 88763 344444444
No 126
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=97.25 E-value=0.00062 Score=61.09 Aligned_cols=87 Identities=11% Similarity=0.077 Sum_probs=63.7
Q ss_pred EcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--hhhhc--Cee-eeccCCCeeEEEEcccc
Q psy4493 44 IMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--LLKKK--KIC-LMTESSSLKLLYVSPEK 118 (323)
Q Consensus 44 ~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l~~~--~i~-l~~~~~~~~vii~Tp~~ 118 (323)
....+.+.+..+.+.+.+ +|+..|+++|.++++.+++++++++.+|||+ .+... -+. +........++|.+|.+
T Consensus 40 ~~f~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 118 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTR 118 (414)
T ss_dssp CCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred cCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChH
Confidence 345678889999999998 8999999999999999999999999999999 11100 000 12223456799999988
Q ss_pred cccchhHHHHHHHH
Q psy4493 119 LAKSKSFMTKLQKM 132 (323)
Q Consensus 119 l~~~~~~~~~l~~~ 132 (323)
.+ ..++.+.++..
T Consensus 119 ~L-~~q~~~~~~~~ 131 (414)
T 3eiq_A 119 EL-AQQIQKVVMAL 131 (414)
T ss_dssp HH-HHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHH
Confidence 76 34555555553
No 127
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=97.19 E-value=0.00038 Score=64.06 Aligned_cols=84 Identities=10% Similarity=0.037 Sum_probs=61.2
Q ss_pred CCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC--CcEEEEccchh-hhhhcCee----eeccCCCeeEEEEcccc
Q psy4493 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK--KDAIIIMPTGK-LLKKKKIC----LMTESSSLKLLYVSPEK 118 (323)
Q Consensus 46 ~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~--~~~lv~~pTgs-~l~~~~i~----l~~~~~~~~vii~Tp~~ 118 (323)
....+.+..+...+.+ +|+..|+++|.++++.++++ +++++.+|||+ ......+. +........++|.+|.+
T Consensus 94 f~~~~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~ 172 (479)
T 3fmp_B 94 FEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTY 172 (479)
T ss_dssp SGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSH
T ss_pred HHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChH
Confidence 3457788999999998 99999999999999999987 89999999999 11110011 12223445899999999
Q ss_pred cccchhHHHHHHH
Q psy4493 119 LAKSKSFMTKLQK 131 (323)
Q Consensus 119 l~~~~~~~~~l~~ 131 (323)
.+. .++...++.
T Consensus 173 ~La-~Q~~~~~~~ 184 (479)
T 3fmp_B 173 ELA-LQTGKVIEQ 184 (479)
T ss_dssp HHH-HHHHHHHHH
T ss_pred HHH-HHHHHHHHH
Confidence 873 444444444
No 128
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=97.06 E-value=0.00089 Score=63.22 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=56.0
Q ss_pred chHHHHHHHHhcCCCCCCCcchHHHHHHHh--cCCcEEEEccchh-hhhhcCee----e----eccCCCeeEEEEccccc
Q psy4493 51 WSDRVRSVLKSKFNLTDFRPNQLAAINIAL--LKKDAIIIMPTGK-LLKKKKIC----L----MTESSSLKLLYVSPEKL 119 (323)
Q Consensus 51 kt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~--~~~~~lv~~pTgs-~l~~~~i~----l----~~~~~~~~vii~Tp~~l 119 (323)
.++.+..++.. +|+..|+|+|.++++.++ +++++++.+|||+ ......+. + ........++|.+|-+.
T Consensus 28 l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 28 LDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SCHHHHHHHHT-TTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHH-CCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHH
Confidence 66778888887 899999999999999999 7789999999999 11111111 0 11123468999999887
Q ss_pred ccchhHHHHHHH
Q psy4493 120 AKSKSFMTKLQK 131 (323)
Q Consensus 120 ~~~~~~~~~l~~ 131 (323)
+. .++...++.
T Consensus 107 La-~Q~~~~~~~ 117 (579)
T 3sqw_A 107 LA-LQIEAEVKK 117 (579)
T ss_dssp HH-HHHHHHHHH
T ss_pred HH-HHHHHHHHH
Confidence 73 344455554
No 129
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=96.94 E-value=0.0013 Score=61.84 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=54.7
Q ss_pred chHHHHHHHHhcCCCCCCCcchHHHHHHHh--cCCcEEEEccchh-hhhhcCee----e----eccCCCeeEEEEccccc
Q psy4493 51 WSDRVRSVLKSKFNLTDFRPNQLAAINIAL--LKKDAIIIMPTGK-LLKKKKIC----L----MTESSSLKLLYVSPEKL 119 (323)
Q Consensus 51 kt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~--~~~~~lv~~pTgs-~l~~~~i~----l----~~~~~~~~vii~Tp~~l 119 (323)
.+..+..++.. +|+..|+|+|.++++.++ +++++++.+|||+ ......+. + ........++|.+|.+.
T Consensus 79 l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHT-TCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 55677778876 899999999999999999 6789999999999 11110011 0 01123457999999887
Q ss_pred ccchhHHHHHHH
Q psy4493 120 AKSKSFMTKLQK 131 (323)
Q Consensus 120 ~~~~~~~~~l~~ 131 (323)
+. .++...++.
T Consensus 158 La-~Q~~~~~~~ 168 (563)
T 3i5x_A 158 LA-LQIEAEVKK 168 (563)
T ss_dssp HH-HHHHHHHHH
T ss_pred HH-HHHHHHHHH
Confidence 73 344444544
No 130
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.92 E-value=0.0033 Score=54.12 Aligned_cols=93 Identities=12% Similarity=0.049 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc-------------ceeeecccc--
Q psy4493 222 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------------SIAFGLGID-- 286 (323)
Q Consensus 222 ~~~~~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~-------------T~~~~~Gid-- 286 (323)
+-..++.|+..+.+ .+.+++||++..+.-+-+..++..+|++..-+-|.....+ |.+..-|+|
T Consensus 110 Kf~~L~~LL~~l~~--~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k~~~~~~~i~Lltsag~~gin~~ 187 (328)
T 3hgt_A 110 KFSVLRDLINLVQE--YETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAAANDFSCTVHLFSSEGINFTKYP 187 (328)
T ss_dssp HHHHHHHHHHHHTT--SCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-------CCSEEEEEEESSCCCTTTSC
T ss_pred cHHHHHHHHHHHHh--CCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhhcccCCceEEEEECCCCCCcCcc
Confidence 33445555555544 6789999999999999999999999998888887744332 555566676
Q ss_pred ---cCCccEEEEccCCCCHhH-HHHHhccCCCCC
Q psy4493 287 ---KPNVRFVIHHCLSKSMEN-FYQVSIAFGLGK 316 (323)
Q Consensus 287 ---~~~v~~Vi~~~~p~~~~~-~~qr~GR~gR~g 316 (323)
....+.||.||..+++.. .+|.+-|+.|.|
T Consensus 188 ~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~ 221 (328)
T 3hgt_A 188 IKSKARFDMLICLDTTVDTSQKDIQYLLQYKRER 221 (328)
T ss_dssp CCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---
T ss_pred cccCCCCCEEEEECCCCCCCChHHHHHHHHhhhc
Confidence 567999999999998876 589888888874
No 131
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=96.72 E-value=0.00073 Score=60.86 Aligned_cols=75 Identities=25% Similarity=0.217 Sum_probs=52.6
Q ss_pred HHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--hhhhcCee-eeccCCCeeEEEEcccccccchhHHHHHH
Q psy4493 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--LLKKKKIC-LMTESSSLKLLYVSPEKLAKSKSFMTKLQ 130 (323)
Q Consensus 54 ~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l~~~~i~-l~~~~~~~~vii~Tp~~l~~~~~~~~~l~ 130 (323)
.+...+++.+|+ .|+++|.++++.+++++++++++|||+ .+ ..-.. +........++|.+|.+.+. .++...++
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~-~~l~~~~~~~~~~~~~lil~Pt~~L~-~q~~~~~~ 85 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTT-FGMMTALWLARKGKKSALVFPTVTLV-KQTLERLQ 85 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHH-HHHHHHHHHHTTTCCEEEEESSHHHH-HHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHH-HHHHHHHHHhcCCCEEEEEECCHHHH-HHHHHHHH
Confidence 455677777888 689999999999999999999999999 11 10000 11113456899999988773 34455555
Q ss_pred H
Q psy4493 131 K 131 (323)
Q Consensus 131 ~ 131 (323)
.
T Consensus 86 ~ 86 (414)
T 3oiy_A 86 K 86 (414)
T ss_dssp H
T ss_pred H
Confidence 4
No 132
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.31 E-value=0.15 Score=48.58 Aligned_cols=57 Identities=7% Similarity=0.049 Sum_probs=40.7
Q ss_pred CCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHH-HhcCCcEEEEccchh
Q psy4493 22 TDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINI-ALLKKDAIIIMPTGK 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~-~~~~~~~lv~~pTgs 93 (323)
..+.+.|.+++. ....+++|.++.|+|||..+..-+.... .. -....+++++.+|..
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~-------------~~~~~~~~~iL~ltft~~ 65 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLM-------------SVENCSPYSIMAVTFTNK 65 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHH-------------HTSCCCGGGEEEEESSHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHH-------------HhCCCChhhEEEEeccHH
Confidence 568899999887 2366789999999999988776654421 00 012257899999887
No 133
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=96.02 E-value=0.011 Score=56.83 Aligned_cols=83 Identities=17% Similarity=0.142 Sum_probs=50.3
Q ss_pred HHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--hhhhcCee----eec--cCCCeeEEEEcccccccchhHHHHH
Q psy4493 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--LLKKKKIC----LMT--ESSSLKLLYVSPEKLAKSKSFMTKL 129 (323)
Q Consensus 58 ~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l~~~~i~----l~~--~~~~~~vii~Tp~~l~~~~~~~~~l 129 (323)
.+.. +|+..|+++|.++++.+++|+++++++|||+ .+... .. +.. ......++|.+|-+-+ ..++.+.+
T Consensus 5 ~l~~-~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~-~~i~~~l~~~~~~~~~~~lvl~Pt~~L-~~Q~~~~~ 81 (696)
T 2ykg_A 5 DTNL-YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSL-LICEHHLKKFPQGQKGKVVFFANQIPV-YEQNKSVF 81 (696)
T ss_dssp --CT-TC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH-HHHHHHHHHSCTTCCCCEEEECSSHHH-HHHHHHHH
T ss_pred cccc-cCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH-HHHHHHHHhCccCCCCeEEEEECCHHH-HHHHHHHH
Confidence 3444 8999999999999999999999999999999 11100 01 110 1122578888897555 33555566
Q ss_pred HHHHhhCCcceEEE
Q psy4493 130 QKMYKAGCLARIAI 143 (323)
Q Consensus 130 ~~~~~~~~v~~vVv 143 (323)
+.......++..++
T Consensus 82 ~~~~~~~~~~v~~~ 95 (696)
T 2ykg_A 82 SKYFERHGYRVTGI 95 (696)
T ss_dssp HHHTTTTTCCEEEE
T ss_pred HHHhccCCceEEEE
Confidence 55432224444444
No 134
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=96.00 E-value=0.0024 Score=59.24 Aligned_cols=83 Identities=10% Similarity=0.097 Sum_probs=47.0
Q ss_pred CCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC--CcEEEEccchh--hhh---hcCeeeeccCCCeeEEEEcccccc
Q psy4493 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK--KDAIIIMPTGK--LLK---KKKICLMTESSSLKLLYVSPEKLA 120 (323)
Q Consensus 48 g~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~--~~~lv~~pTgs--~l~---~~~i~l~~~~~~~~vii~Tp~~l~ 120 (323)
..|.+..+.+.+.. .|+..|+++|.++++.++++ +++++.+|||+ .+. ..--.+........++|.+|.+.+
T Consensus 123 ~~~l~~~~~~~l~~-~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L 201 (508)
T 3fho_A 123 XXXXXXXXXXXXXX-XXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSREL 201 (508)
T ss_dssp -----------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHH
T ss_pred cccccccccccccc-ccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHH
Confidence 34566667777776 69999999999999999998 89999999999 111 000001223345689999999876
Q ss_pred cchhHHHHHHHH
Q psy4493 121 KSKSFMTKLQKM 132 (323)
Q Consensus 121 ~~~~~~~~l~~~ 132 (323)
..++.+.++..
T Consensus 202 -~~Q~~~~~~~~ 212 (508)
T 3fho_A 202 -ARQIMDVVTEM 212 (508)
T ss_dssp -HHHHHHHHHHH
T ss_pred -HHHHHHHHHHh
Confidence 34555555543
No 135
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.76 E-value=0.0025 Score=61.97 Aligned_cols=123 Identities=8% Similarity=0.062 Sum_probs=69.8
Q ss_pred CCCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC-
Q psy4493 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK- 82 (323)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~- 82 (323)
|+|-+.+..+..++++.+.++-..|............. ..........+...+.+.++| .|+++|.++++.++++
T Consensus 309 H~P~~~~~~~~a~~rl~~eEl~~~ql~l~~~r~~~~~~---~~~~~~~~~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l 384 (780)
T 1gm5_A 309 HFPKTFYHLEKARERLAYEELFVLQLAFQKIRKEREKH---GGIPKKIEGKLAEEFIKSLPF-KLTNAQKRAHQEIRNDM 384 (780)
T ss_dssp HSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCTHHHHHHHHHSSS-CCCHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc---cCCCCCCchHHHHHHHHhCCC-CCCHHHHHHHHHHHhhc
Confidence 45655554555666666767666776643222110000 011111223344445455999 8999999999998775
Q ss_pred -----CcEEEEccchh--hhhhcCee-eeccCCCeeEEEEcccccccchhHHHHHHHH
Q psy4493 83 -----KDAIIIMPTGK--LLKKKKIC-LMTESSSLKLLYVSPEKLAKSKSFMTKLQKM 132 (323)
Q Consensus 83 -----~~~lv~~pTgs--~l~~~~i~-l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~ 132 (323)
.++++++|||+ .+... .. +........++|++|.+.+. .++...+...
T Consensus 385 ~~~~~~~~Ll~a~TGSGKTlval-l~il~~l~~g~qvlvlaPtr~La-~Q~~~~l~~~ 440 (780)
T 1gm5_A 385 ISEKPMNRLLQGDVGSGKTVVAQ-LAILDNYEAGFQTAFMVPTSILA-IQHYRRTVES 440 (780)
T ss_dssp HSSSCCCCEEECCSSSSHHHHHH-HHHHHHHHHTSCEEEECSCHHHH-HHHHHHHHHH
T ss_pred cccCCCcEEEEcCCCCCHHHHHH-HHHHHHHHcCCeEEEEeCcHHHH-HHHHHHHHHH
Confidence 58999999999 11000 00 00011235799999998873 3444455543
No 136
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.60 E-value=0.0064 Score=58.92 Aligned_cols=75 Identities=25% Similarity=0.335 Sum_probs=55.7
Q ss_pred CCCCCchHHHHHHHHhcCCCCCCCcchHHHHHH-HhcCCcEEEEccchh-hhhhcCee-e-eccCCCeeEEEEccccccc
Q psy4493 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINI-ALLKKDAIIIMPTGK-LLKKKKIC-L-MTESSSLKLLYVSPEKLAK 121 (323)
Q Consensus 46 ~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~-~~~~~~~lv~~pTgs-~l~~~~i~-l-~~~~~~~~vii~Tp~~l~~ 121 (323)
..++|.++.+...++. +|+..|+++|.++++. +.+++++++++|||+ ......+. + ........++|.+|-+.+.
T Consensus 3 f~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa 81 (720)
T 2zj8_A 3 VDELRVDERIKSTLKE-RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALA 81 (720)
T ss_dssp GGGCCSCHHHHHHHHH-TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGH
T ss_pred HhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHH
Confidence 4567888999999988 8999999999999998 788999999999999 10000011 0 0001135899999998874
No 137
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=95.60 E-value=0.008 Score=58.07 Aligned_cols=70 Identities=21% Similarity=0.260 Sum_probs=47.8
Q ss_pred chHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee-eeccCCCeeEEEEccccccc
Q psy4493 51 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC-LMTESSSLKLLYVSPEKLAK 121 (323)
Q Consensus 51 kt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~-l~~~~~~~~vii~Tp~~l~~ 121 (323)
.++.+...+++ +||..|+++|.++++.+.+++++++++|||+ ........ +........++|.+|-+.+.
T Consensus 10 l~~~~~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La 81 (702)
T 2p6r_A 10 ISSYAVGILKE-EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALA 81 (702)
T ss_dssp HHHHHHHHHHC-C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHH
T ss_pred cCHHHHHHHHh-CCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHH
Confidence 56677788877 8999999999999999999999999999999 00000001 00001245899999998663
No 138
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=95.53 E-value=0.015 Score=55.16 Aligned_cols=56 Identities=14% Similarity=0.018 Sum_probs=37.5
Q ss_pred CCChhHHHHHHH----HhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 23 DFRPNQLAAINI----ALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 23 ~~~~~Q~~~~~~----~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
.+|+.|.+.++. +..++++++.+|||.|||......+...+ ...++.+++++||.+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~---------------~~~~~kvli~t~T~~ 62 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYS---------------SERKLKVLYLVRTNS 62 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHH---------------HHHTCEEEEEESSHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhh---------------hhcCCeEEEECCCHH
Confidence 469999997764 35789999999999999976544332210 012456777777777
No 139
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.50 E-value=0.07 Score=43.49 Aligned_cols=86 Identities=14% Similarity=0.017 Sum_probs=44.3
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchhhhhhcCee--eeccCCCeeEEEEcccc
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC--LMTESSSLKLLYVSPEK 118 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs~l~~~~i~--l~~~~~~~~vii~Tp~~ 118 (323)
.++..++|.|||..+...+.++ ...++.++++-|.-..-....+. +.... ..+-+.+.+
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~----------------~~~g~kVli~~~~~d~r~~~~i~srlG~~~--~~~~~~~~~- 75 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRL----------------EYADVKYLVFKPKIDTRSIRNIQSRTGTSL--PSVEVESAP- 75 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH----------------HHTTCCEEEEEECCCGGGCSSCCCCCCCSS--CCEEESSTH-
T ss_pred EEEECCCCCcHHHHHHHHHHHH----------------HhcCCEEEEEEeccCchHHHHHHHhcCCCc--cccccCCHH-
Confidence 4556688999998877776552 23567787775543210111111 11011 112222221
Q ss_pred cccchhHHHHHHHHHhhCCcceEEEecccccc
Q psy4493 119 LAKSKSFMTKLQKMYKAGCLARIAIDEVHCCS 150 (323)
Q Consensus 119 l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~ 150 (323)
.+...+.......+.++|||||++.+.
T Consensus 76 -----~i~~~i~~~~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 76 -----EILNYIMSNSFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp -----HHHHHHHSTTSCTTCCEEEECSGGGSC
T ss_pred -----HHHHHHHHHhhCCCCCEEEEecCccCc
Confidence 222233332222458999999999764
No 140
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.44 E-value=0.098 Score=41.80 Aligned_cols=56 Identities=7% Similarity=0.034 Sum_probs=28.7
Q ss_pred CCCCCCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhcC---CCeEEEcCCCCCchHHHHHHH
Q psy4493 1 MLPNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK---KDAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~~---~~~~~~~~tg~gkt~~~~~~l 59 (323)
|....||..++... .+..-.-++...+.+...+.. ..+++..|+|.|||..+....
T Consensus 1 m~~~~~~~~~~~p~---~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~ 59 (226)
T 2chg_A 1 MENFEIWVEKYRPR---TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALA 59 (226)
T ss_dssp ---CCCHHHHTSCS---SGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHH
T ss_pred CcchhhHHHhcCCC---CHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 67777887643211 111111234445555544432 358889999999996544333
No 141
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.43 E-value=0.0081 Score=58.13 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=55.6
Q ss_pred CCCCCchHHHHHHHHhcCCCCCCCcchHHHHHH-HhcCCcEEEEccchh-hhhhcCee-e-eccCCCeeEEEEccccccc
Q psy4493 46 PTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINI-ALLKKDAIIIMPTGK-LLKKKKIC-L-MTESSSLKLLYVSPEKLAK 121 (323)
Q Consensus 46 ~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~-~~~~~~~lv~~pTgs-~l~~~~i~-l-~~~~~~~~vii~Tp~~l~~ 121 (323)
...+|.++.+...+++ +|+..|+++|.++++. +.+++++++++|||+ ........ + ........++|.+|-+.+.
T Consensus 10 ~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La 88 (715)
T 2va8_A 10 IEDLKLPSNVIEIIKK-RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALT 88 (715)
T ss_dssp GGGSSSCHHHHHHHHT-TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHH
T ss_pred HHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHH
Confidence 5677888999999988 8999999999999999 788999999999999 00000000 0 0011245899999999663
No 142
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=95.42 E-value=0.03 Score=54.91 Aligned_cols=81 Identities=14% Similarity=0.177 Sum_probs=49.2
Q ss_pred cCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----ee--ccCCCeeEEEEcccccccchhHHHHHHHHHh
Q psy4493 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----LM--TESSSLKLLYVSPEKLAKSKSFMTKLQKMYK 134 (323)
Q Consensus 62 ~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l~--~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~ 134 (323)
.+|+..|+++|.++++.+++++++++++|||+ ........ +. .......++|.+|.+-+ ..++...++....
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L-~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPV-YEQQKNVFKHHFE 321 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHH-HHHHHHHHHHHHG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHH-HHHHHHHHHHhcc
Confidence 47899999999999999999999999999999 10000011 01 11125678999998755 3456666665433
Q ss_pred hCCcceEEE
Q psy4493 135 AGCLARIAI 143 (323)
Q Consensus 135 ~~~v~~vVv 143 (323)
...++..++
T Consensus 322 ~~~~~v~~~ 330 (797)
T 4a2q_A 322 RQGYSVQGI 330 (797)
T ss_dssp GGTCCEEEE
T ss_pred cCCceEEEE
Confidence 224555444
No 143
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=95.40 E-value=0.011 Score=59.90 Aligned_cols=73 Identities=26% Similarity=0.229 Sum_probs=51.2
Q ss_pred HHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--hhhhcCee--eeccCCCeeEEEEcccccccchhHHHHHH
Q psy4493 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--LLKKKKIC--LMTESSSLKLLYVSPEKLAKSKSFMTKLQ 130 (323)
Q Consensus 55 ~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l~~~~i~--l~~~~~~~~vii~Tp~~l~~~~~~~~~l~ 130 (323)
+...+...+|+ .|+++|.++++.+++|+++++++|||+ .+ ..+. +........++|.+|.+.+. .+....++
T Consensus 67 ~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl--~~l~~il~~~~~~~~~Lil~PtreLa-~Q~~~~l~ 142 (1104)
T 4ddu_A 67 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTT--FGMMTALWLARKGKKSALVFPTVTLV-KQTLERLQ 142 (1104)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHH--HHHHHHHHHHTTTCCEEEEESSHHHH-HHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHH--HHHHHHHHHHhcCCeEEEEechHHHH-HHHHHHHH
Confidence 44455566888 599999999999999999999999999 11 1111 11113456899999998873 34444555
Q ss_pred H
Q psy4493 131 K 131 (323)
Q Consensus 131 ~ 131 (323)
.
T Consensus 143 ~ 143 (1104)
T 4ddu_A 143 K 143 (1104)
T ss_dssp T
T ss_pred H
Confidence 4
No 144
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.40 E-value=0.032 Score=44.11 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=25.7
Q ss_pred CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccc
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT 91 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pT 91 (323)
++-.++..|.|.|||..+...+.++ ..+++.++++.|.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~----------------~~~g~~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY----------------KLGKKKVAVFKPK 40 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH----------------HHTTCEEEEEEEC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH----------------HHCCCeEEEEeec
Confidence 3435567799999998877666541 2356677777665
No 145
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.29 E-value=0.28 Score=43.44 Aligned_cols=57 Identities=16% Similarity=0.074 Sum_probs=40.2
Q ss_pred CCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 23 DFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
.+.|+|...+......+-.++..+-+.|||..+...+... ++ ...+.++++++||..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~------------a~--~~~g~~v~~vA~t~~ 219 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHF------------VC--FNKDKAVGILAHKGS 219 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHH------------HH--SSSSCEEEEEESSHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHH------------HH--hCCCCeEEEEeCCHH
Confidence 6789999988876545667888899999997654433220 00 124567999999987
No 146
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.14 E-value=0.043 Score=43.62 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=26.0
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccch
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG 92 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTg 92 (323)
.++..|.|+|||..+...+.++ ...++.++++-|..
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~----------------~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRA----------------KIAKQKIQVFKPEI 46 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH----------------HHTTCCEEEEEEC-
T ss_pred EEEECCCCCcHHHHHHHHHHHH----------------HHCCCEEEEEEecc
Confidence 4556788999998887777652 24678888887764
No 147
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.12 E-value=0.043 Score=52.05 Aligned_cols=113 Identities=16% Similarity=0.135 Sum_probs=67.8
Q ss_pred CCChhHHHHHHHHhc--CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchhhhhhcCe
Q psy4493 23 DFRPNQLAAINIALL--KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKI 100 (323)
Q Consensus 23 ~~~~~Q~~~~~~~~~--~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs~l~~~~i 100 (323)
.+...|.++++.... ....++.++-|.|||..+-.++... . .+++|.|||...++...-
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~------------------~-~~~~vtAP~~~a~~~l~~ 235 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI------------------A-GRAIVTAPAKASTDVLAQ 235 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS------------------S-SCEEEECSSCCSCHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH------------------H-hCcEEECCCHHHHHHHHH
Confidence 345689999988875 3346788899999997766666542 1 247999999883322100
Q ss_pred eeeccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEee
Q psy4493 101 CLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180 (323)
Q Consensus 101 ~l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSA 180 (323)
. .. ..+-+..|+.++ . ...+.+++|||||=.+.. -.+..+. ...+.++||.
T Consensus 236 ~-~~----~~i~~~~Pd~~~---------~---~~~~~dlliVDEAAaIp~---------pll~~ll---~~~~~v~~~t 286 (671)
T 2zpa_A 236 F-AG----EKFRFIAPDALL---------A---SDEQADWLVVDEAAAIPA---------PLLHQLV---SRFPRTLLTT 286 (671)
T ss_dssp H-HG----GGCCBCCHHHHH---------H---SCCCCSEEEEETGGGSCH---------HHHHHHH---TTSSEEEEEE
T ss_pred H-hh----CCeEEeCchhhh---------h---CcccCCEEEEEchhcCCH---------HHHHHHH---hhCCeEEEEe
Confidence 0 00 013333454321 1 124689999999997743 1222233 2445677888
Q ss_pred cCC
Q psy4493 181 TAT 183 (323)
Q Consensus 181 T~~ 183 (323)
|..
T Consensus 287 Tv~ 289 (671)
T 2zpa_A 287 TVQ 289 (671)
T ss_dssp EBS
T ss_pred cCC
Confidence 865
No 148
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=95.02 E-value=0.018 Score=58.24 Aligned_cols=73 Identities=12% Similarity=0.019 Sum_probs=52.1
Q ss_pred HHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--hhhhcCee-e-eccCCCeeEEEEcccccccchhHHHHHH
Q psy4493 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--LLKKKKIC-L-MTESSSLKLLYVSPEKLAKSKSFMTKLQ 130 (323)
Q Consensus 55 ~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l~~~~i~-l-~~~~~~~~vii~Tp~~l~~~~~~~~~l~ 130 (323)
+...+.+.+|+. | ++|.++++.+++|+++++++|||+ .+ ..+. + ........++|.+|-+.+. .+....++
T Consensus 46 ~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl--~~lp~l~~~~~~~~~~lil~PtreLa-~Q~~~~l~ 120 (1054)
T 1gku_B 46 FVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS--FGLAMSLFLALKGKRCYVIFPTSLLV-IQAAETIR 120 (1054)
T ss_dssp HHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH--HHHHHHHHHHTTSCCEEEEESCHHHH-HHHHHHHH
T ss_pred HHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH--HHHHHHHHHhhcCCeEEEEeccHHHH-HHHHHHHH
Confidence 446667779999 9 999999999999999999999999 21 2122 1 1112356789999998873 34445555
Q ss_pred HH
Q psy4493 131 KM 132 (323)
Q Consensus 131 ~~ 132 (323)
..
T Consensus 121 ~l 122 (1054)
T 1gku_B 121 KY 122 (1054)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 149
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=94.92 E-value=0.058 Score=50.01 Aligned_cols=76 Identities=18% Similarity=0.094 Sum_probs=49.0
Q ss_pred CCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee----ee--ccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcc
Q psy4493 67 DFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC----LM--TESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLA 139 (323)
Q Consensus 67 ~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~----l~--~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~ 139 (323)
.|+++|.++++.+++++++++.+|||+ ........ +. .......++|.+|.+-+ ..++...++.......+.
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L-~~q~~~~~~~~~~~~~~~ 82 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPV-YEQQATVFSRYFERLGYN 82 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHH-HHHHHHHHHHHHHTTTCC
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHH-HHHHHHHHHHHhccCCcE
Confidence 588999999999999999999999999 00000001 01 11125678999998665 345666666644333555
Q ss_pred eEEE
Q psy4493 140 RIAI 143 (323)
Q Consensus 140 ~vVv 143 (323)
..++
T Consensus 83 ~~~~ 86 (555)
T 3tbk_A 83 IASI 86 (555)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 150
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=94.90 E-value=0.048 Score=50.70 Aligned_cols=78 Identities=13% Similarity=0.190 Sum_probs=47.4
Q ss_pred CCCCCCCcchHHHHHHHhcCCcEEEEccchh--hhhhcCee----ee--ccCCCeeEEEEcccccccchhHHHHHHHHHh
Q psy4493 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGK--LLKKKKIC----LM--TESSSLKLLYVSPEKLAKSKSFMTKLQKMYK 134 (323)
Q Consensus 63 ~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l~~~~i~----l~--~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~ 134 (323)
++.-.|+++|.++++.+++++++++.+|||+ .+.. ... +. .......++|.+|.+-+ ..++...++....
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~-~~~~~~~~~~~~~~~~~~~lil~P~~~L-~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVS-ILICEHHFQNMPAGRKAKVVFLATKVPV-YEQQKNVFKHHFE 80 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH-HHHHHHHHHTCCSSCCCCEEEECSSHHH-HHHHHHHHHHHHG
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHH-HHHHHHHHHhCcccCCCeEEEEeCCHHH-HHHHHHHHHHHhc
Confidence 3455789999999999999999999999999 1110 011 00 11125678999998655 3456666665433
Q ss_pred hCCcceEE
Q psy4493 135 AGCLARIA 142 (323)
Q Consensus 135 ~~~v~~vV 142 (323)
...+...+
T Consensus 81 ~~~~~~~~ 88 (556)
T 4a2p_A 81 RQGYSVQG 88 (556)
T ss_dssp GGTCCEEE
T ss_pred ccCceEEE
Confidence 22444444
No 151
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.76 E-value=0.082 Score=45.96 Aligned_cols=21 Identities=5% Similarity=-0.080 Sum_probs=16.0
Q ss_pred eEEEcCCCCCchHHHHHHHHh
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~ 61 (323)
.++..|+|.|||..+....+.
T Consensus 27 ~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 27 LLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHHH
Confidence 677889999999766555544
No 152
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=94.56 E-value=0.064 Score=53.49 Aligned_cols=81 Identities=14% Similarity=0.211 Sum_probs=49.9
Q ss_pred cCCCCCCCcchHHHHHHHhcCCcEEEEccchh--hhhhcCee----eec--cCCCeeEEEEcccccccchhHHHHHHHHH
Q psy4493 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--LLKKKKIC----LMT--ESSSLKLLYVSPEKLAKSKSFMTKLQKMY 133 (323)
Q Consensus 62 ~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l~~~~i~----l~~--~~~~~~vii~Tp~~l~~~~~~~~~l~~~~ 133 (323)
.+|+..|+++|.++++.+++|+++++++|||+ .+.. ... +.. ......++|.+|-+-+ ..++...++...
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~-~~~i~~~l~~~~~~~~~~vLvl~Pt~~L-~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVS-ILICEHHFQNMPAGRKAKVVFLATKVPV-YEQQKNVFKHHF 320 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH-HHHHHTTTTTCCSSCCCCEEEECSSHHH-HHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHH-HHHHHHHHHhccccCCCeEEEEeCCHHH-HHHHHHHHHHHh
Confidence 35688999999999999999999999999999 1110 011 000 1115678999997754 335666666644
Q ss_pred hhCCcceEEEe
Q psy4493 134 KAGCLARIAID 144 (323)
Q Consensus 134 ~~~~v~~vVvD 144 (323)
....++..++.
T Consensus 321 ~~~~~~v~~~~ 331 (936)
T 4a2w_A 321 ERQGYSVQGIS 331 (936)
T ss_dssp HTTTCCEEEEC
T ss_pred cccCceEEEEE
Confidence 33356555543
No 153
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=94.29 E-value=0.043 Score=53.27 Aligned_cols=80 Identities=11% Similarity=-0.049 Sum_probs=50.3
Q ss_pred HhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCeee-eccCCCeeEEEEcccccccchhHHHHHHHHHhhCC
Q psy4493 60 KSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKICL-MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGC 137 (323)
Q Consensus 60 ~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~l-~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~ 137 (323)
++.+|+ .|+++|..++|.+++|+ ++.++||+ ......+++ ........++|.||.+-+. .+..+.+...+..-.
T Consensus 77 ~r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA-~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 77 RRVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLA-SRDAEQMGKIFEFLG 152 (844)
T ss_dssp HHHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHH-HHHHHHHHHHHHHTT
T ss_pred HHHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHH-HHHHHHHHHHHhhcC
Confidence 345899 99999999999999999 99999999 111222221 0111234688888988874 333334444333335
Q ss_pred cceEEE
Q psy4493 138 LARIAI 143 (323)
Q Consensus 138 v~~vVv 143 (323)
++..++
T Consensus 153 l~v~~i 158 (844)
T 1tf5_A 153 LTVGLN 158 (844)
T ss_dssp CCEEEC
T ss_pred CeEEEE
Confidence 555544
No 154
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.23 E-value=0.2 Score=40.41 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=24.8
Q ss_pred EEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 43 IIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 43 ~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
+..+.|+|||+.++..+.++ ...++.++++-|...
T Consensus 33 itG~MgsGKTT~lL~~a~r~----------------~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 33 ICGSMFSGKSEELIRRVRRT----------------QFAKQHAIVFKPCID 67 (214)
T ss_dssp EECSTTSCHHHHHHHHHHHH----------------HHTTCCEEEEECC--
T ss_pred EECCCCCcHHHHHHHHHHHH----------------HHCCCEEEEEEeccC
Confidence 45577999998877777652 346788888877643
No 155
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.14 E-value=0.091 Score=51.32 Aligned_cols=57 Identities=12% Similarity=0.115 Sum_probs=44.1
Q ss_pred CCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 22 TDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
..+.+.|..++..++.+.-.++..|+|.|||..+...+..+. ...++.+++++||+.
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~---------------~~~~~~ilv~a~tn~ 411 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLA---------------RQGNGPVLVCAPSNI 411 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHH---------------TTCSSCEEEEESSHH
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHH---------------HcCCCcEEEEcCcHH
Confidence 456789999999988777678889999999987666554310 014678999999999
No 156
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.94 E-value=0.094 Score=51.27 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=44.6
Q ss_pred CCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 22 TDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
..+.+.|.+++..++.+...++.+|.|.|||..+...+... +. ..++.+++++||+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l-------------~~--~~~~~ILv~a~tn~ 415 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHL-------------SK--IHKDRILVCAPSNV 415 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHH-------------HH--HHCCCEEEEESSHH
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHH-------------Hh--CCCCeEEEEcCcHH
Confidence 45678999999998876667889999999998776665431 10 15688999999999
No 157
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=93.82 E-value=0.058 Score=54.14 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=47.0
Q ss_pred HhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh--hhhhcCeee-eccCCCeeEEEEcccccccchhHHHHHHH
Q psy4493 60 KSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--LLKKKKICL-MTESSSLKLLYVSPEKLAKSKSFMTKLQK 131 (323)
Q Consensus 60 ~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l~~~~i~l-~~~~~~~~vii~Tp~~l~~~~~~~~~l~~ 131 (323)
...|+|. |+++|.++++.+.+++++++++|||+ .+.. ...+ ........++|++|-+.+. .++...+..
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva-~lai~~~l~~g~rvL~l~PtkaLa-~Q~~~~l~~ 151 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVA-EYAIAQSLKNKQRVIYTSPIKALS-NQKYRELLA 151 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHH-HHHHHHHHHTTCEEEEEESSHHHH-HHHHHHHHH
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHH-HHHHHHHhccCCeEEEECChHHHH-HHHHHHHHH
Confidence 3447886 99999999999999999999999999 1110 0110 1112346899999988774 344444444
No 158
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.80 E-value=0.45 Score=38.34 Aligned_cols=102 Identities=13% Similarity=0.079 Sum_probs=52.6
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCeeeeccCCCeeEEEEccccc
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKICLMTESSSLKLLYVSPEKL 119 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~l~~~~~~~~vii~Tp~~l 119 (323)
.++..|.|.|||..++..+.++ ...++.++++-|... .-....+.=.......-+.+..+..+
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~----------------~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di 94 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRG----------------IYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEI 94 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH----------------HHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHH----------------HHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHH
Confidence 4456678999998877776551 235778888888543 10001111011111222334444444
Q ss_pred ccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEE
Q psy4493 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177 (323)
Q Consensus 120 ~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~ 177 (323)
.. .+ ..+.++|+||||+.+.+ ..+..+..+.. .+.+++.
T Consensus 95 ~~------~i-----~~~~dvV~IDEaQFf~~------~~v~~l~~la~--~gi~Vi~ 133 (219)
T 3e2i_A 95 MT------HD-----LTNVDVIGIDEVQFFDD------EIVSIVEKLSA--DGHRVIV 133 (219)
T ss_dssp GG------SC-----CTTCSEEEECCGGGSCT------HHHHHHHHHHH--TTCEEEE
T ss_pred HH------HH-----hcCCCEEEEechhcCCH------HHHHHHHHHHH--CCCEEEE
Confidence 32 11 24788999999997753 23344444442 2566553
No 159
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.49 E-value=1.1 Score=35.47 Aligned_cols=126 Identities=13% Similarity=0.170 Sum_probs=63.2
Q ss_pred CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEE------ccchh--hhhhcCeeeeccCCCe
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIII------MPTGK--LLKKKKICLMTESSSL 109 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~------~pTgs--~l~~~~i~l~~~~~~~ 109 (323)
...+++..++|.|||...... ++.++..|..|+++ ..+|. .+..+++.+......+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~Gl----------------alRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf 91 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGT----------------AARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGF 91 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHH----------------HHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTC
T ss_pred CceEEEECCCCCCHHHHHHHH----------------HHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEccccc
Confidence 445778889999999764433 34456678887666 23333 5555555532111111
Q ss_pred eEEEEcccccccchhHHHHH---HHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCCh
Q psy4493 110 KLLYVSPEKLAKSKSFMTKL---QKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATT 184 (323)
Q Consensus 110 ~vii~Tp~~l~~~~~~~~~l---~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~ 184 (323)
. .-+++.-.........+ +......+.++||+||+-.....+.--.+.+ +..+... |...-+.+|.-.++
T Consensus 92 ~--~~~~~~~~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev--~~~l~~R-p~~~~vIlTGr~ap 164 (196)
T 1g5t_A 92 T--WETQNREADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEV--ISALNAR-PGHQTVIITGRGCH 164 (196)
T ss_dssp C--CCGGGHHHHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHH--HHHHHTS-CTTCEEEEECSSCC
T ss_pred c--cCCCCcHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHH--HHHHHhC-cCCCEEEEECCCCc
Confidence 1 22322110000111122 2223336899999999976544332112222 3334443 44555566665554
No 160
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=93.23 E-value=0.11 Score=52.20 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=45.5
Q ss_pred cCCCCCCCcchHHHHHHHhcCCcEEEEccchh--hh-hhcCeeeeccCCCeeEEEEcccccccchhHHHHHHH
Q psy4493 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGK--LL-KKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQK 131 (323)
Q Consensus 62 ~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l-~~~~i~l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~ 131 (323)
.|+|+ |+++|.++|+.+++|+++++++|||+ .+ ....+. ........++|.+|-+.+. .+....+..
T Consensus 35 ~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~-~~~~~g~~vlvl~PtraLa-~Q~~~~l~~ 104 (997)
T 4a4z_A 35 SWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIA-MAHRNMTKTIYTSPIKALS-NQKFRDFKE 104 (997)
T ss_dssp CCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHH-HHHHTTCEEEEEESCGGGH-HHHHHHHHT
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHH-HHHhcCCeEEEEeCCHHHH-HHHHHHHHH
Confidence 46665 79999999999999999999999999 11 111111 1112345789999998874 344444443
No 161
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=93.16 E-value=0.63 Score=43.78 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=40.1
Q ss_pred CCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHh-cCCcEEEEccchh
Q psy4493 23 DFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIAL-LKKDAIIIMPTGK 93 (323)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~~pTgs 93 (323)
.+.++|...+..+...+..++..+-+.|||..+...+.. ..+. .+.++++++||..
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~---------------~~~~~~~~~i~~va~t~~ 219 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAH---------------FVCFNKDKAVGILAHKGS 219 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHH---------------HHHTSSSCEEEEEESSHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHH---------------HHHhCCCCeEEEEECCHH
Confidence 468999998887655566888889999999765433321 1122 3457999999988
No 162
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=93.02 E-value=0.044 Score=55.55 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=44.2
Q ss_pred CCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee-eeccCCCeeEEEEcccccccchhHHHHHHH
Q psy4493 65 LTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC-LMTESSSLKLLYVSPEKLAKSKSFMTKLQK 131 (323)
Q Consensus 65 ~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~-l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~ 131 (323)
...|+++|.++++.+.+++++++++|||+ ......+. +........++|++|-+.+. .+....+..
T Consensus 182 ~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa-~Q~~~~l~~ 249 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALS-NQKYRELLA 249 (1108)
T ss_dssp SSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHH-HHHHHHHHH
Confidence 33589999999999999999999999999 11111111 01112345799999999874 344444444
No 163
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.99 E-value=0.06 Score=48.51 Aligned_cols=81 Identities=10% Similarity=-0.022 Sum_probs=43.7
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchhhhhhcCeeeecc--CCCeeEEEEcccc
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTE--SSSLKLLYVSPEK 118 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs~l~~~~i~l~~~--~~~~~vii~Tp~~ 118 (323)
.++.++.|.|||..+...+ ..+..++++||++......-.+... ......-+.|-++
T Consensus 164 ~~I~G~aGsGKTt~I~~~~---------------------~~~~~lVlTpT~~aa~~l~~kl~~~~~~~~~~~~V~T~ds 222 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRV---------------------NFEEDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDS 222 (446)
T ss_dssp EEEEECTTSCHHHHHHHHC---------------------CTTTCEEEESCHHHHHHHHHHHTTTSCCCCCTTTEEEHHH
T ss_pred EEEEcCCCCCHHHHHHHHh---------------------ccCCeEEEeCCHHHHHHHHHHhhhcCccccccceEEEeHH
Confidence 4567799999997654443 2246799999999332221111000 0111223555555
Q ss_pred cccchhHHHHHHHHH-hhCCcceEEEecccccc
Q psy4493 119 LAKSKSFMTKLQKMY-KAGCLARIAIDEVHCCS 150 (323)
Q Consensus 119 l~~~~~~~~~l~~~~-~~~~v~~vVvDEah~~~ 150 (323)
++. +... ..-..+++|||||-++.
T Consensus 223 fL~--------~~~~~~~~~~d~liiDE~sm~~ 247 (446)
T 3vkw_A 223 FLM--------NYGKGARCQFKRLFIDEGLMLH 247 (446)
T ss_dssp HHH--------TTTSSCCCCCSEEEEETGGGSC
T ss_pred hhc--------CCCCCCCCcCCEEEEeCcccCC
Confidence 431 1100 00137899999999764
No 164
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=92.68 E-value=0.072 Score=42.65 Aligned_cols=68 Identities=25% Similarity=0.243 Sum_probs=42.9
Q ss_pred CCCCCCcchHHHHHHHhcCCcEEEEccchh--hhhhcC--ee-e---eccCCCeeEEEEcccccccchhHHHHHHH
Q psy4493 64 NLTDFRPNQLAAINIALLKKDAIIIMPTGK--LLKKKK--IC-L---MTESSSLKLLYVSPEKLAKSKSFMTKLQK 131 (323)
Q Consensus 64 g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l~~~~--i~-l---~~~~~~~~vii~Tp~~l~~~~~~~~~l~~ 131 (323)
....|+++|.++++.+++++++++.+|||+ .+...- .. + ........++|.+|-+.+..+.+.+.++.
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 445789999999999999999999999999 110000 00 0 01123457888888766532224444444
No 165
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=92.25 E-value=0.14 Score=50.02 Aligned_cols=83 Identities=11% Similarity=-0.058 Sum_probs=50.8
Q ss_pred HHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCeee-eccCCCeeEEEEcccccccchhHHHHHHHHHh
Q psy4493 57 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKICL-MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYK 134 (323)
Q Consensus 57 ~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~l-~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~ 134 (323)
.+.++.+|+ .|+++|..+++.+++|+ ++.++||+ ......+++ ........++|.||.+.+. .+..+.+...+.
T Consensus 102 Ea~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA-~Qdae~m~~l~~ 177 (922)
T 1nkt_A 102 EAAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLA-KRDSEWMGRVHR 177 (922)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHH-HHHHHHHHHHHh
Confidence 344456898 99999999999999998 99999999 111122221 0011134688888887763 233333444333
Q ss_pred hCCcceEEE
Q psy4493 135 AGCLARIAI 143 (323)
Q Consensus 135 ~~~v~~vVv 143 (323)
.-.++..++
T Consensus 178 ~lGLsv~~i 186 (922)
T 1nkt_A 178 FLGLQVGVI 186 (922)
T ss_dssp HTTCCEEEC
T ss_pred hcCCeEEEE
Confidence 334555544
No 166
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.21 E-value=0.25 Score=39.94 Aligned_cols=36 Identities=14% Similarity=0.070 Sum_probs=22.3
Q ss_pred ChhHHHHHHHHhc-CC---CeEEEcCCCCCchHHHHHHHH
Q psy4493 25 RPNQLAAINIALL-KK---DAIIIMPTDYPWSDRVRSVLK 60 (323)
Q Consensus 25 ~~~Q~~~~~~~~~-~~---~~~~~~~tg~gkt~~~~~~l~ 60 (323)
++...+.+...+. ++ .+++..|+|.|||..+.....
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4445555544443 33 477888999999976554443
No 167
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=92.19 E-value=0.16 Score=49.73 Aligned_cols=63 Identities=16% Similarity=0.092 Sum_probs=43.2
Q ss_pred HHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCeee-eccCCCeeEEEEccccccc
Q psy4493 56 RSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKICL-MTESSSLKLLYVSPEKLAK 121 (323)
Q Consensus 56 ~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~l-~~~~~~~~vii~Tp~~l~~ 121 (323)
..+.++.+|+ .|+++|..+++.+++|+ ++.++||+ ......+++ ........+.|+||...+.
T Consensus 69 REAs~R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA 133 (997)
T 2ipc_A 69 RESAKRYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLA 133 (997)
T ss_dssp HHHHHHHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHH
T ss_pred HHHHHHHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHH
Confidence 4556667899 89999999999999998 99999999 111111120 0111234678888888774
No 168
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.61 E-value=0.51 Score=41.19 Aligned_cols=21 Identities=10% Similarity=-0.051 Sum_probs=15.5
Q ss_pred eEEEcCCCCCchHHHHHHHHh
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~ 61 (323)
+++..|+|.|||..+......
T Consensus 41 ~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678899999999765544433
No 169
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.53 E-value=0.44 Score=37.75 Aligned_cols=38 Identities=11% Similarity=0.069 Sum_probs=28.8
Q ss_pred CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccc
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT 91 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pT 91 (323)
++=.++..|.|+|||+.+...+.+. ..+++.++++-|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~----------------~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRF----------------QIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH----------------HHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHH----------------HHcCCeEEEEccc
Confidence 4445667799999999988888762 2357888888776
No 170
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.46 E-value=0.82 Score=39.13 Aligned_cols=14 Identities=29% Similarity=0.216 Sum_probs=12.4
Q ss_pred CcceEEEecccccc
Q psy4493 137 CLARIAIDEVHCCS 150 (323)
Q Consensus 137 ~v~~vVvDEah~~~ 150 (323)
..+++++||+|.+.
T Consensus 105 ~~~vliiDEi~~l~ 118 (324)
T 3u61_B 105 RQKVIVIDEFDRSG 118 (324)
T ss_dssp CEEEEEEESCCCGG
T ss_pred CCeEEEEECCcccC
Confidence 67899999999886
No 171
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=91.46 E-value=0.26 Score=50.24 Aligned_cols=82 Identities=13% Similarity=0.210 Sum_probs=53.7
Q ss_pred CCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhc----CC--cEEEEccchh--hhhhcCeeeeccCCCeeEEEEccccc
Q psy4493 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL----KK--DAIIIMPTGK--LLKKKKICLMTESSSLKLLYVSPEKL 119 (323)
Q Consensus 48 g~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~----~~--~~lv~~pTgs--~l~~~~i~l~~~~~~~~vii~Tp~~l 119 (323)
.++........+.+.|+++ ++++|.++++.+++ ++ ++++++|||+ .+...-..+........++|.+|-+.
T Consensus 585 ~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~ 663 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 663 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHH
Confidence 3445556667777779997 59999999999876 55 8999999999 11100000011123458999999987
Q ss_pred ccchhHHHHHHH
Q psy4493 120 AKSKSFMTKLQK 131 (323)
Q Consensus 120 ~~~~~~~~~l~~ 131 (323)
+. .++...+..
T Consensus 664 La-~Q~~~~~~~ 674 (1151)
T 2eyq_A 664 LA-QQHYDNFRD 674 (1151)
T ss_dssp HH-HHHHHHHHH
T ss_pred HH-HHHHHHHHH
Confidence 73 345455544
No 172
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=91.32 E-value=0.33 Score=34.30 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=36.4
Q ss_pred HHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCC
Q psy4493 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 274 (323)
Q Consensus 229 l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~ 274 (323)
+.+.+....++.+++|||.+-..+...+..|.+.|+++..+.||+.
T Consensus 45 l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 45 LREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3344443336689999999999999999999999998888888753
No 173
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=90.57 E-value=0.13 Score=47.45 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=43.6
Q ss_pred CCCCcchHHHHHHHhcCCcEEEEccchh--hhhhcCeee-eccCCCeeEEEEcccccccchhHHHHHHH
Q psy4493 66 TDFRPNQLAAINIALLKKDAIIIMPTGK--LLKKKKICL-MTESSSLKLLYVSPEKLAKSKSFMTKLQK 131 (323)
Q Consensus 66 ~~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l~~~~i~l-~~~~~~~~vii~Tp~~l~~~~~~~~~l~~ 131 (323)
..|+++|.++++.+++++++++++|||+ .+....... ....+...++|.+|.+.+ ..++...++.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L-~~Q~~~~~~~ 179 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTAL-TTQMADDFVD 179 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHH-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHH-HHHHHHHHHH
Confidence 3789999999999999999999999999 111110000 001233489999998766 3455555554
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.42 E-value=1.9 Score=39.76 Aligned_cols=43 Identities=19% Similarity=0.126 Sum_probs=26.1
Q ss_pred CcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCC
Q psy4493 137 CLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183 (323)
Q Consensus 137 ~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~ 183 (323)
+-.+++|||+|.+.... +.....+..+... .+.++|+++++..
T Consensus 148 ~~~vliIDEid~l~~~~---~~~l~~L~~~l~~-~~~~iIli~~~~~ 190 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGD---RGGVGQLAQFCRK-TSTPLILICNERN 190 (516)
T ss_dssp TSEEEEECSGGGCCTTS---TTHHHHHHHHHHH-CSSCEEEEESCTT
T ss_pred CCeEEEEECCCccchhh---HHHHHHHHHHHHh-cCCCEEEEEcCCC
Confidence 45689999999987532 1112233333333 3677888887754
No 175
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.28 E-value=2.5 Score=31.64 Aligned_cols=20 Identities=5% Similarity=-0.227 Sum_probs=15.4
Q ss_pred cCCCeEEEcCCCCCchHHHH
Q psy4493 37 LKKDAIIIMPTDYPWSDRVR 56 (323)
Q Consensus 37 ~~~~~~~~~~tg~gkt~~~~ 56 (323)
.++.+.+..|+|.|||.-+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46668888999999995433
No 176
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.27 E-value=4.7 Score=33.93 Aligned_cols=17 Identities=0% Similarity=-0.300 Sum_probs=13.7
Q ss_pred CeEEEcCCCCCchHHHH
Q psy4493 40 DAIIIMPTDYPWSDRVR 56 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~ 56 (323)
++++..|+|.|||..+.
T Consensus 69 ~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48889999999995543
No 177
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.86 E-value=0.61 Score=35.85 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=21.5
Q ss_pred ChhHHHHHHHHhc---CCCeEEEcCCCCCchHHHHHHH
Q psy4493 25 RPNQLAAINIALL---KKDAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 25 ~~~Q~~~~~~~~~---~~~~~~~~~tg~gkt~~~~~~l 59 (323)
++.+.+.+...+. ...+++..|+|.|||..+....
T Consensus 27 ~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 27 RDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHH
Confidence 4444454443332 3457888999999996554443
No 178
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=88.96 E-value=0.31 Score=47.33 Aligned_cols=62 Identities=15% Similarity=0.041 Sum_probs=41.2
Q ss_pred HHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCeee-eccCCCeeEEEEccccccc
Q psy4493 57 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKICL-MTESSSLKLLYVSPEKLAK 121 (323)
Q Consensus 57 ~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~l-~~~~~~~~vii~Tp~~l~~ 121 (323)
.+..+.+|. .|+++|..+++.+++|+ ++.++||+ ......+++ ........++|.||.+.+.
T Consensus 65 ea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA 128 (853)
T 2fsf_A 65 EASKRVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLA 128 (853)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHH
T ss_pred HHHHHHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHH
Confidence 344445675 88999999999999998 99999999 111122221 0111234678888888764
No 179
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=88.63 E-value=0.27 Score=44.75 Aligned_cols=61 Identities=23% Similarity=0.258 Sum_probs=41.3
Q ss_pred CCCcchHHHHHHHhcCCcEEEEccchh--hhhhcCeeeeccCCCeeEEEEcccccccchhHHHHHHH
Q psy4493 67 DFRPNQLAAINIALLKKDAIIIMPTGK--LLKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQK 131 (323)
Q Consensus 67 ~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l~~~~i~l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~ 131 (323)
.|+++|.++++.+++++++++++|||+ .+.... .+... ...++|.+|.+.+ ..+|...+..
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~-~i~~~--~~~~Lvl~P~~~L-~~Q~~~~~~~ 155 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMA-AINEL--STPTLIVVPTLAL-AEQWKERLGI 155 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHH-HHHHH--CSCEEEEESSHHH-HHHHHHHGGG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHH-HHHHc--CCCEEEEECCHHH-HHHHHHHHHh
Confidence 689999999999999999999999999 111100 00001 3468888898555 3455555554
No 180
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=88.49 E-value=0.22 Score=41.87 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=41.5
Q ss_pred CCCcchHHHHHHHhcCCcEEEEccchh--hhhhcCeee-eccCCCeeEEEEcccccccchhHHHHHHH
Q psy4493 67 DFRPNQLAAINIALLKKDAIIIMPTGK--LLKKKKICL-MTESSSLKLLYVSPEKLAKSKSFMTKLQK 131 (323)
Q Consensus 67 ~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l~~~~i~l-~~~~~~~~vii~Tp~~l~~~~~~~~~l~~ 131 (323)
.|+++|.++++.++++++.++++|||+ .+....... ....+...++|.+|-+.+ ..++.+.++.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L-~~q~~~~l~~ 179 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTAL-TTQMADDFVD 179 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHH-HHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHH-HHHHHHHHHH
Confidence 688999999999999888999999999 111110000 011223478888897655 3355555554
No 181
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=88.36 E-value=2.2 Score=36.23 Aligned_cols=34 Identities=3% Similarity=-0.014 Sum_probs=21.2
Q ss_pred hhHHHHHHHHhc-CC--CeEEEcCCCCCchHHHHHHH
Q psy4493 26 PNQLAAINIALL-KK--DAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 26 ~~Q~~~~~~~~~-~~--~~~~~~~tg~gkt~~~~~~l 59 (323)
+...+.+...+. ++ ++++..|+|.|||..+....
T Consensus 31 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~ 67 (327)
T 1iqp_A 31 EHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALA 67 (327)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHH
Confidence 344444444443 32 58889999999996554443
No 182
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=88.19 E-value=0.65 Score=33.90 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=31.4
Q ss_pred CC-CcEEEEe-CChhHHHHHHHHHHhCCCeEEeecCCCC
Q psy4493 238 RN-QSGIIYT-TSIKECEDLREELRNRGLRVSAYHAKLE 274 (323)
Q Consensus 238 ~~-~~~iVF~-~s~~~~~~l~~~L~~~~~~v~~~h~~~~ 274 (323)
++ .+++||| .+-..+...+..|+..|+++..+.||+.
T Consensus 87 ~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 87 LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 55 7899999 5878888999999999998888888753
No 183
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.16 E-value=4.1 Score=30.10 Aligned_cols=17 Identities=0% Similarity=-0.238 Sum_probs=14.3
Q ss_pred cCCCeEEEcCCCCCchH
Q psy4493 37 LKKDAIIIMPTDYPWSD 53 (323)
Q Consensus 37 ~~~~~~~~~~tg~gkt~ 53 (323)
.+.++++..|+|.|||.
T Consensus 23 ~~~~vll~G~~GtGKt~ 39 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMT 39 (145)
T ss_dssp CCSCEEEESSTTSSHHH
T ss_pred CCCCEEEECCCCCCHHH
Confidence 46679999999999983
No 184
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=88.12 E-value=2.1 Score=36.53 Aligned_cols=18 Identities=6% Similarity=-0.060 Sum_probs=14.4
Q ss_pred CCeEEEcCCCCCchHHHH
Q psy4493 39 KDAIIIMPTDYPWSDRVR 56 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~ 56 (323)
..+++..|+|.|||..+.
T Consensus 38 ~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp SSEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 468899999999995433
No 185
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=87.99 E-value=1.5 Score=35.21 Aligned_cols=21 Identities=5% Similarity=0.052 Sum_probs=15.8
Q ss_pred CCCeEEEcCCCCCchHHHHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSV 58 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~ 58 (323)
+..+++..|+|.|||..+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l 72 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAA 72 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 456888999999999654433
No 186
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.83 E-value=5.4 Score=32.09 Aligned_cols=23 Identities=4% Similarity=-0.165 Sum_probs=16.6
Q ss_pred CCCeEEEcCCCCCchHHHHHHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLK 60 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~ 60 (323)
+.-.++..|+|.|||.-+...+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44566788999999976555543
No 187
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=87.67 E-value=1.4 Score=35.90 Aligned_cols=36 Identities=11% Similarity=0.094 Sum_probs=25.5
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccch
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG 92 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTg 92 (323)
.++..+.|+|||+.++..+.++ ...|+.++++-|..
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~----------------~~~g~kvli~kp~~ 57 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRF----------------QIAQYKCLVIKYAK 57 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH----------------HTTTCCEEEEEETT
T ss_pred EEEECCCCCcHHHHHHHHHHHH----------------HHCCCeEEEEeecC
Confidence 3445577999998877776652 34678888887754
No 188
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.48 E-value=3.4 Score=34.89 Aligned_cols=36 Identities=8% Similarity=0.011 Sum_probs=22.2
Q ss_pred ChhHHHHHHHHhcC---CCeEEEcCCCCCchHHHHHHHH
Q psy4493 25 RPNQLAAINIALLK---KDAIIIMPTDYPWSDRVRSVLK 60 (323)
Q Consensus 25 ~~~Q~~~~~~~~~~---~~~~~~~~tg~gkt~~~~~~l~ 60 (323)
++...+.+...+.. .++++..|+|.|||..+.....
T Consensus 26 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 26 NKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp CTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 34444555544433 2378899999999965544443
No 189
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=87.30 E-value=5.5 Score=35.80 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=18.3
Q ss_pred HHHHHHHHhhCCcceEEEeccccccc
Q psy4493 126 MTKLQKMYKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 126 ~~~l~~~~~~~~v~~vVvDEah~~~~ 151 (323)
...++.......+++||||..+.+..
T Consensus 299 ~~~~~~l~~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 299 RARARRLVSQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHHHHHHHHSCCCEEEEECGGGCBC
T ss_pred HHHHHHHHHHcCCCEEEEcChhhcCC
Confidence 33444443345799999999998864
No 190
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=87.23 E-value=1.7 Score=28.85 Aligned_cols=37 Identities=19% Similarity=0.304 Sum_probs=30.4
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCe-EEeecCCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLES 275 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~-v~~~h~~~~~ 275 (323)
++.+++|||.+-..+...+..|.+.|+. +..+ |++..
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~~ 77 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLKD 77 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETTT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHHH
Confidence 5688999999988999999999999984 5555 76543
No 191
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=86.96 E-value=4.4 Score=35.50 Aligned_cols=86 Identities=10% Similarity=0.101 Sum_probs=49.9
Q ss_pred CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh----hhhhcCeeeeccCCCeeEEEEc
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----LLKKKKICLMTESSSLKLLYVS 115 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs----~l~~~~i~l~~~~~~~~vii~T 115 (323)
-.++..|+|+|||......+.+ ....+..++++....+ .....|+++ .++.|..
T Consensus 76 li~I~G~pGsGKTtlal~la~~----------------~~~~g~~vlyi~~E~s~~~~~a~~~g~d~------~~l~i~~ 133 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQ----------------AQKAGGTCAFIDAEHALDPVYARALGVNT------DELLVSQ 133 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH----------------HHHTTCCEEEEESSCCCCHHHHHHTTCCG------GGCEEEC
T ss_pred EEEEEcCCCCChHHHHHHHHHH----------------HHHCCCeEEEEECCCChhHHHHHHcCCCH------HHceeec
Confidence 3556679999999765555443 1224666766665554 233444431 1344444
Q ss_pred ccccccchhHHHHHHHHHhhCCcceEEEecccccc
Q psy4493 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCS 150 (323)
Q Consensus 116 p~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~ 150 (323)
|..+. .....++.......+++||||.+..+.
T Consensus 134 ~~~~e---~~l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 134 PDNGE---QALEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp CSSHH---HHHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred CCcHH---HHHHHHHHHHhcCCCCEEEEeChHHhc
Confidence 54332 223344444334579999999999886
No 192
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=86.95 E-value=0.67 Score=33.59 Aligned_cols=46 Identities=13% Similarity=0.084 Sum_probs=35.2
Q ss_pred HHHHHHHhhcCCCcEEEEeCChhH--HHHHHHHHHhCCCeEEeecCCC
Q psy4493 228 ELADLMSRRFRNQSGIIYTTSIKE--CEDLREELRNRGLRVSAYHAKL 273 (323)
Q Consensus 228 ~l~~~l~~~~~~~~~iVF~~s~~~--~~~l~~~L~~~~~~v~~~h~~~ 273 (323)
.+.+.+....++.+++|||.+-.. +...+..|...|+++..+.||+
T Consensus 60 ~l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~ 107 (124)
T 3flh_A 60 DLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGAL 107 (124)
T ss_dssp HHHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHH
T ss_pred HHHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcH
Confidence 344444433356789999999877 8899999999999988887775
No 193
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.80 E-value=2.6 Score=36.34 Aligned_cols=20 Identities=5% Similarity=0.111 Sum_probs=15.0
Q ss_pred eEEEcCCCCCchHHHHHHHH
Q psy4493 41 AIIIMPTDYPWSDRVRSVLK 60 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~ 60 (323)
.++..|+|.|||..+.....
T Consensus 49 ~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78889999999965544433
No 194
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=86.62 E-value=0.63 Score=32.20 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=32.1
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL 273 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~ 273 (323)
++.+++|||.+-..+...+..|...|+++..+.|++
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 568899999999999999999999999888888775
No 195
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=86.48 E-value=2.1 Score=37.05 Aligned_cols=56 Identities=20% Similarity=0.196 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhC-CcceEEEeccccccccC------CCchHHHHhHHHHHhhCCCCCEEEEeec
Q psy4493 125 FMTKLQKMYKAG-CLARIAIDEVHCCSSWG------HDFRPDYQYLSILKTMFPDVPILGLTAT 181 (323)
Q Consensus 125 ~~~~l~~~~~~~-~v~~vVvDEah~~~~~~------~~~r~~~~~l~~l~~~~~~~~~i~lSAT 181 (323)
+...++...... .+++||||-.+.+...+ .........|..+-..+ +++++++|-.
T Consensus 143 i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel-~vpVi~lsQl 205 (338)
T 4a1f_A 143 IRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLAREL-EIPIIALVQL 205 (338)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHH-TSCEEEEEEC
T ss_pred HHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHc-CCeEEEEEec
Confidence 333444443334 79999999999885421 01112222333333332 8888888654
No 196
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=86.36 E-value=5.2 Score=31.82 Aligned_cols=22 Identities=0% Similarity=-0.376 Sum_probs=16.0
Q ss_pred CCCeEEEcCCCCCchHHHHHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l 59 (323)
+.-+.+..|+|.|||.-+...+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 4556778899999997655444
No 197
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=86.03 E-value=0.64 Score=32.37 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=31.9
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL 273 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~ 273 (323)
++.+++|||.+-..+...+..|...|+++..+.|++
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 567899999999899999999999999888888775
No 198
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=85.80 E-value=1 Score=31.55 Aligned_cols=36 Identities=8% Similarity=0.076 Sum_probs=31.0
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCe-EEeecCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKL 273 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~-v~~~h~~~ 273 (323)
++.+++|||.+-..+...+..|...|+. +..+.|++
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 93 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGF 93 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCH
Confidence 6689999999988999999999999984 77777765
No 199
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=85.79 E-value=0.33 Score=46.59 Aligned_cols=116 Identities=27% Similarity=0.274 Sum_probs=72.5
Q ss_pred CCCcchHHHHHHHhcCCcEEEEccchh------------hhhhc------Ceee-----------e--------------
Q psy4493 67 DFRPNQLAAINIALLKKDAIIIMPTGK------------LLKKK------KICL-----------M-------------- 103 (323)
Q Consensus 67 ~~~~~Q~~~i~~~~~~~~~lv~~pTgs------------~l~~~------~i~l-----------~-------------- 103 (323)
.|+++|.++++.+++++++++++|||+ .+... +..| .
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~ 86 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYR 86 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSC
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCce
Confidence 578999999999999999999999999 11000 1111 0
Q ss_pred ---------------ccCCCeeEEEEcccccccchhHHHH--HHHHHhhCCcceEEEeccccccccCCCchHHHHhHH--
Q psy4493 104 ---------------TESSSLKLLYVSPEKLAKSKSFMTK--LQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLS-- 164 (323)
Q Consensus 104 ---------------~~~~~~~vii~Tp~~l~~~~~~~~~--l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~-- 164 (323)
......+|+|+||++|... ..... ........++++|||||||++... ..++.....+.
T Consensus 87 v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~-l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~-~~~~~i~~~~l~~ 164 (699)
T 4gl2_A 87 VIGLSGDTQLKISFPEVVKSCDIIISTAQILENS-LLNLENGEDAGVQLSDFSLIIIDECHHTNKE-AVYNNIMRHYLMQ 164 (699)
T ss_dssp EEEEC----CCCCHHHHHHSCSEEEEEHHHHHHH-TC--------CCCGGGCSEEEEESGGGCBTT-BSSCSHHHHHHHH
T ss_pred EEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHH-HhccccccccceecccCcEEEEECccccCcc-chHHHHHHHHHHh
Confidence 0014579999999999741 00000 111234468999999999988542 23333322211
Q ss_pred HHHhhC---------CCCCEEEEeecCCh
Q psy4493 165 ILKTMF---------PDVPILGLTATATT 184 (323)
Q Consensus 165 ~l~~~~---------~~~~~i~lSAT~~~ 184 (323)
.+.... +..++++||||+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 165 KLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred hhcccccccccccCCCCCEEEEecccccc
Confidence 111111 57799999999997
No 200
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=85.72 E-value=4.8 Score=36.19 Aligned_cols=15 Identities=20% Similarity=0.228 Sum_probs=13.0
Q ss_pred CcceEEEeccccccc
Q psy4493 137 CLARIAIDEVHCCSS 151 (323)
Q Consensus 137 ~v~~vVvDEah~~~~ 151 (323)
+.+++++||+|.+..
T Consensus 194 ~~~vL~IDEi~~l~~ 208 (440)
T 2z4s_A 194 KVDILLIDDVQFLIG 208 (440)
T ss_dssp TCSEEEEECGGGGSS
T ss_pred CCCEEEEeCcccccC
Confidence 678999999998864
No 201
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=85.61 E-value=1 Score=40.36 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=41.2
Q ss_pred CCCcchHHHHHHHhcCCcEEEEccchh--hhhhcCeee-eccCCCeeEEEEcccccccchhHHHHHHHH
Q psy4493 67 DFRPNQLAAINIALLKKDAIIIMPTGK--LLKKKKICL-MTESSSLKLLYVSPEKLAKSKSFMTKLQKM 132 (323)
Q Consensus 67 ~~~~~Q~~~i~~~~~~~~~lv~~pTgs--~l~~~~i~l-~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~ 132 (323)
.|+++|.++++.++++ ++++.+|||+ .+.....-+ ........++|.+|-+.+ ..+|...+...
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L-~~q~~~~~~~~ 75 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPL-VLQHAESFRRL 75 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHH-HHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHH-HHHHHHHHHHH
Confidence 5789999999999999 9999999999 111100000 000234578999997544 23555555553
No 202
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=85.43 E-value=5.9 Score=32.86 Aligned_cols=18 Identities=11% Similarity=-0.007 Sum_probs=14.3
Q ss_pred CCCeEEEcCCCCCchHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRV 55 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~ 55 (323)
.+.+++..|+|.|||..+
T Consensus 51 ~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CSEEEEESSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 456888999999999543
No 203
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=85.30 E-value=2.7 Score=39.08 Aligned_cols=24 Identities=21% Similarity=0.048 Sum_probs=19.6
Q ss_pred CCCeEEEcCCCCCchHHHHHHHHh
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
..++++...||+|||..+...+..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~s 237 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLS 237 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999887776655
No 204
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=85.30 E-value=5.5 Score=35.90 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=17.6
Q ss_pred HHHHHHHhhCCcceEEEeccccccc
Q psy4493 127 TKLQKMYKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 127 ~~l~~~~~~~~v~~vVvDEah~~~~ 151 (323)
..++......++++||||+...+..
T Consensus 303 ~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 303 AKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHHHHHHHHcCCCEEEEccHHHhcc
Confidence 3444433335799999999998874
No 205
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=85.05 E-value=0.77 Score=32.15 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=31.3
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL 273 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~ 273 (323)
++.+++|||.+-..+...+..|.+.|+++..+.||+
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 567899999999999999999999999887777664
No 206
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=84.88 E-value=5.3 Score=35.10 Aligned_cols=17 Identities=6% Similarity=0.040 Sum_probs=13.9
Q ss_pred CCCeEEEcCCCCCchHH
Q psy4493 38 KKDAIIIMPTDYPWSDR 54 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~ 54 (323)
.+.+++..|+|.|||..
T Consensus 148 ~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CSEEEEESSTTSCHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 35688999999999954
No 207
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=83.64 E-value=1.1 Score=30.55 Aligned_cols=35 Identities=9% Similarity=0.007 Sum_probs=31.2
Q ss_pred CcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCC
Q psy4493 240 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 274 (323)
Q Consensus 240 ~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~ 274 (323)
.+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999999999999999999998878888764
No 208
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=83.58 E-value=1.6 Score=39.39 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=12.5
Q ss_pred hCCcceEEEeccccccc
Q psy4493 135 AGCLARIAIDEVHCCSS 151 (323)
Q Consensus 135 ~~~v~~vVvDEah~~~~ 151 (323)
..+-.+++|||+|.+..
T Consensus 104 ~~~~~iLfIDEI~~l~~ 120 (447)
T 3pvs_A 104 AGRRTILFVDEVHRFNK 120 (447)
T ss_dssp TTCCEEEEEETTTCC--
T ss_pred cCCCcEEEEeChhhhCH
Confidence 34567999999999864
No 209
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=83.58 E-value=0.91 Score=42.27 Aligned_cols=53 Identities=15% Similarity=0.008 Sum_probs=35.4
Q ss_pred CCCcchHHHHHH----HhcCCcEEEEccchh-hhhhcCeeeeccCCCeeEEEEccccccc
Q psy4493 67 DFRPNQLAAINI----ALLKKDAIIIMPTGK-LLKKKKICLMTESSSLKLLYVSPEKLAK 121 (323)
Q Consensus 67 ~~~~~Q~~~i~~----~~~~~~~lv~~pTgs-~l~~~~i~l~~~~~~~~vii~Tp~~l~~ 121 (323)
.++|.|.+++.. +..++++++.+|||+ .....-++... ....++|+||.+.+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~--~~~~v~i~~pt~~l~ 60 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE--VKPKVLFVVRTHNEF 60 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH--HCSEEEEEESSGGGH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh--CCCeEEEEcCCHHHH
Confidence 578999987664 457899999999999 10000011000 245899999998874
No 210
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=83.45 E-value=0.57 Score=38.37 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=26.0
Q ss_pred CCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 66 TDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 66 ~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
..|+++|.+++..+++++++++++|||+
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~ 119 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGS 119 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSST
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 3689999999999999999999999999
No 211
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.22 E-value=5.7 Score=34.03 Aligned_cols=32 Identities=6% Similarity=0.103 Sum_probs=20.1
Q ss_pred HHHHHHHHh-cC--CCeEEEcCCCCCchHHHHHHH
Q psy4493 28 QLAAINIAL-LK--KDAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 28 Q~~~~~~~~-~~--~~~~~~~~tg~gkt~~~~~~l 59 (323)
..+.+...+ .+ .++++..|+|.|||..+....
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la 79 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALT 79 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHH
Confidence 344444443 33 458889999999996544433
No 212
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=82.79 E-value=10 Score=31.14 Aligned_cols=15 Identities=13% Similarity=0.275 Sum_probs=12.5
Q ss_pred CCcceEEEecccccc
Q psy4493 136 GCLARIAIDEVHCCS 150 (323)
Q Consensus 136 ~~v~~vVvDEah~~~ 150 (323)
..-.++++||+|.+.
T Consensus 123 ~~~~vl~iDEid~l~ 137 (272)
T 1d2n_A 123 SQLSCVVVDDIERLL 137 (272)
T ss_dssp SSEEEEEECCHHHHT
T ss_pred cCCcEEEEEChhhhh
Confidence 356799999999984
No 213
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=82.31 E-value=8.3 Score=32.88 Aligned_cols=17 Identities=6% Similarity=0.026 Sum_probs=13.9
Q ss_pred CCeEEEcCCCCCchHHH
Q psy4493 39 KDAIIIMPTDYPWSDRV 55 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~ 55 (323)
.++++..|+|.|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 46889999999999543
No 214
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=82.26 E-value=0.64 Score=37.88 Aligned_cols=55 Identities=9% Similarity=0.108 Sum_probs=37.6
Q ss_pred CCCcchHHHHHHHhcCCcEEEEccchh----hhhhcCee-e--eccCCCeeEEEEccccccc
Q psy4493 67 DFRPNQLAAINIALLKKDAIIIMPTGK----LLKKKKIC-L--MTESSSLKLLYVSPEKLAK 121 (323)
Q Consensus 67 ~~~~~Q~~~i~~~~~~~~~lv~~pTgs----~l~~~~i~-l--~~~~~~~~vii~Tp~~l~~ 121 (323)
.++++|.++++.+.+|+++++++|||+ .+...-.. + ........+++..|.+.+.
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la 122 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISA 122 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHH
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHH
Confidence 457899999999999999999999999 11100000 0 1112345788988988763
No 215
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=82.12 E-value=16 Score=29.55 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=13.7
Q ss_pred CCCeEEEcCCCCCchHH
Q psy4493 38 KKDAIIIMPTDYPWSDR 54 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~ 54 (323)
.+.+++..|+|.|||..
T Consensus 39 ~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 34578899999999954
No 216
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=81.94 E-value=1.3 Score=30.96 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=31.0
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCe-EEeecCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKL 273 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~-v~~~h~~~ 273 (323)
++.+++|||.+-..+...+..|...|+. +..+.||+
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 5678999999999999999999999984 77777765
No 217
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=81.55 E-value=22 Score=30.20 Aligned_cols=16 Identities=13% Similarity=0.067 Sum_probs=13.3
Q ss_pred CCeEEEcCCCCCchHH
Q psy4493 39 KDAIIIMPTDYPWSDR 54 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~ 54 (323)
+.+++..|+|.|||..
T Consensus 46 ~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYL 61 (322)
T ss_dssp SEEEEESSSSSCHHHH
T ss_pred ceEEEECCCCccHHHH
Confidence 5588899999999944
No 218
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=80.56 E-value=8.7 Score=32.66 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=17.6
Q ss_pred HHHHHHHHhhCCcc--eEEEeccccccc
Q psy4493 126 MTKLQKMYKAGCLA--RIAIDEVHCCSS 151 (323)
Q Consensus 126 ~~~l~~~~~~~~v~--~vVvDEah~~~~ 151 (323)
...++.......++ +||||-...+..
T Consensus 168 ~~~i~~l~~~~~~~~~lVVID~l~~l~~ 195 (315)
T 3bh0_A 168 WSKTRQTKRKNPGKRVIVMIDYLQLLEP 195 (315)
T ss_dssp HHHHHHHHHTSSSCCEEEEEECGGGSBC
T ss_pred HHHHHHHHHhcCCCCeEEEEeCchhcCC
Confidence 33444443444788 999999998764
No 219
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=80.37 E-value=10 Score=34.09 Aligned_cols=16 Identities=13% Similarity=0.067 Sum_probs=13.1
Q ss_pred CCeEEEcCCCCCchHH
Q psy4493 39 KDAIIIMPTDYPWSDR 54 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~ 54 (323)
+.+++..|+|.|||..
T Consensus 168 ~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 168 RGILLFGPPGTGKSYL 183 (444)
T ss_dssp SEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4588899999999944
No 220
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=80.09 E-value=2.1 Score=31.99 Aligned_cols=37 Identities=14% Similarity=0.067 Sum_probs=31.6
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCC-eEEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~v~~~h~~~~ 274 (323)
++.+++|||.+-..+...+..|...|+ ++..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 568899999998888999999999998 5999999985
No 221
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=79.70 E-value=1.6 Score=32.53 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=31.9
Q ss_pred CCCcEEEEeCCh--hHHHHHHHHHHhCCCeEEeecCCCC
Q psy4493 238 RNQSGIIYTTSI--KECEDLREELRNRGLRVSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~--~~~~~l~~~L~~~~~~v~~~h~~~~ 274 (323)
++.+++|||.+- ..+...+..|+..|+++..+.||+.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 567899999987 6888999999999999888888754
No 222
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=79.41 E-value=5.2 Score=39.34 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=16.2
Q ss_pred CCCeEEEcCCCCCchHHHHHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l 59 (323)
.++++++.|+|.|||..+....
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la 212 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLA 212 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHH
Confidence 3468999999999996544433
No 223
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=79.13 E-value=21 Score=30.22 Aligned_cols=16 Identities=13% Similarity=-0.022 Sum_probs=13.2
Q ss_pred CCeEEEcCCCCCchHH
Q psy4493 39 KDAIIIMPTDYPWSDR 54 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~ 54 (323)
+.+++..|+|.|||..
T Consensus 52 ~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 52 SGILLYGPPGTGKSYL 67 (322)
T ss_dssp CEEEEECSSSSCHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 4588899999999944
No 224
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=78.50 E-value=1.6 Score=32.16 Aligned_cols=37 Identities=8% Similarity=0.237 Sum_probs=32.1
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCC-eEEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~v~~~h~~~~ 274 (323)
++.+++|||.+-..+...+..|...|+ ++..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 678999999999899999999999998 5888888764
No 225
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=78.35 E-value=2.6 Score=29.59 Aligned_cols=38 Identities=5% Similarity=0.103 Sum_probs=32.1
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES 275 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~ 275 (323)
++.+++|||.+-..+...+..|...|+....+.|++..
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~~ 92 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVYD 92 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHHH
Confidence 56889999999999999999999999855777787653
No 226
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=78.23 E-value=4.1 Score=39.45 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=21.0
Q ss_pred ChhHHHHHHHHhc---CCCeEEEcCCCCCchHHHHHH
Q psy4493 25 RPNQLAAINIALL---KKDAIIIMPTDYPWSDRVRSV 58 (323)
Q Consensus 25 ~~~Q~~~~~~~~~---~~~~~~~~~tg~gkt~~~~~~ 58 (323)
|+.+...+..++. +.++++..|+|.|||..+...
T Consensus 191 r~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~l 227 (758)
T 1r6b_X 191 REKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGL 227 (758)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHH
Confidence 3444443333332 456889999999999654433
No 227
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=77.94 E-value=8.8 Score=33.38 Aligned_cols=87 Identities=15% Similarity=0.136 Sum_probs=49.1
Q ss_pred CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh----hhhhcCeeeeccCCCeeEEEE
Q psy4493 39 KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----LLKKKKICLMTESSSLKLLYV 114 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs----~l~~~~i~l~~~~~~~~vii~ 114 (323)
.-.++..++|.|||......+.. ....+..++++....+ .....|+++ .++.+.
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~----------------~~~~g~~vlyid~E~s~~~~~a~~~g~~~------~~l~i~ 121 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAA----------------AQREGKTCAFIDAEHALDPIYARKLGVDI------DNLLCS 121 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH----------------HHHTTCCEEEEESSCCCCHHHHHHTTCCG------GGCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHH----------------HHHCCCeEEEEeCCCCccHHHHHHcCCCh------hheeee
Confidence 33566779999999765555433 1234566666655433 233444431 124444
Q ss_pred cccccccchhHHHHHHHHHhhCCcceEEEecccccc
Q psy4493 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCS 150 (323)
Q Consensus 115 Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~ 150 (323)
.|.... .....++.......+++||||+...+.
T Consensus 122 ~~~~~e---~~~~~~~~l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 122 QPDTGE---QALEICDALARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp CCSSHH---HHHHHHHHHHHHTCCSEEEEECGGGCC
T ss_pred CCCCHH---HHHHHHHHHHhccCCCEEEEcCHHHhc
Confidence 444321 223344433334579999999999876
No 228
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=77.75 E-value=1.6 Score=40.83 Aligned_cols=54 Identities=26% Similarity=0.310 Sum_probs=33.2
Q ss_pred CCCcchHHHHHHHhc----C-CcEEEEccchh--hhhhcCee--eecc-------CCCeeEEEEcccccc
Q psy4493 67 DFRPNQLAAINIALL----K-KDAIIIMPTGK--LLKKKKIC--LMTE-------SSSLKLLYVSPEKLA 120 (323)
Q Consensus 67 ~~~~~Q~~~i~~~~~----~-~~~lv~~pTgs--~l~~~~i~--l~~~-------~~~~~vii~Tp~~l~ 120 (323)
.|+++|.++++.+++ + +++++++|||+ .+....+. +... ....+++|.+|-+.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L 247 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVL 247 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC----
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHH
Confidence 689999999998876 4 66999999999 11111110 1111 145789999996665
No 229
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=77.73 E-value=8.1 Score=33.50 Aligned_cols=96 Identities=18% Similarity=0.112 Sum_probs=52.1
Q ss_pred HHHHHHhc------CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh----hhhhcC
Q psy4493 30 AAINIALL------KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----LLKKKK 99 (323)
Q Consensus 30 ~~~~~~~~------~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs----~l~~~~ 99 (323)
..+..++. +.-..+..|+|+|||.-+...+.. ....+..++++.-..+ .....|
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~----------------~~~~g~~vlyi~~E~~~~~~~a~~lG 110 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN----------------AQAAGGIAAFIDAEHALDPEYAKKLG 110 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH----------------HHHTTCCEEEEESSCCCCHHHHHHTT
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH----------------HHhCCCeEEEEECCCCcCHHHHHHcC
Confidence 34555554 233666779999999765555533 1224555655544333 223344
Q ss_pred eeeeccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEecccccc
Q psy4493 100 ICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCS 150 (323)
Q Consensus 100 i~l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~ 150 (323)
+.+ .++.+..|..+. .....++......+.++|||||.-.+.
T Consensus 111 ~~~------~~l~i~~~~~~e---~~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 111 VDT------DSLLVSQPDTGE---QALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp CCG------GGCEEECCSSHH---HHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred CCH------HHeEEecCCCHH---HHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 431 123444444332 223344433334568999999999886
No 230
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=77.39 E-value=1.7 Score=31.66 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=31.1
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCe-EEeecCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKL 273 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~-v~~~h~~~ 273 (323)
++.+++|||.+-..+...+..|.+.|+. +..+.|++
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 117 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGY 117 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcH
Confidence 5689999999988999999999999984 87888875
No 231
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=77.13 E-value=2.2 Score=40.66 Aligned_cols=56 Identities=11% Similarity=0.146 Sum_probs=39.2
Q ss_pred CCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHH-HhcCCcEEEEccchh
Q psy4493 23 DFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINI-ALLKKDAIIIMPTGK 93 (323)
Q Consensus 23 ~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~-~~~~~~~lv~~pTgs 93 (323)
.+.+.|.+++.. ...+++|.++.|+|||..+..-+... +.. -.....++++..|..
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~l-------------l~~~~~~~~~IL~lTfT~~ 58 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHL-------------IRGCGYQARHIAAVTFTNK 58 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHH-------------HHHHCCCGGGEEEEESSHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHH-------------HHhcCCCHHHeEEEeccHH
Confidence 467899998874 25678899999999998877655442 111 013356888888876
No 232
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=76.50 E-value=11 Score=30.24 Aligned_cols=53 Identities=17% Similarity=0.105 Sum_probs=27.6
Q ss_pred HHHHHHhhCCcceEEEeccccccccCC---CchHHHHhHHHHHhhCCCCCEEEEeec
Q psy4493 128 KLQKMYKAGCLARIAIDEVHCCSSWGH---DFRPDYQYLSILKTMFPDVPILGLTAT 181 (323)
Q Consensus 128 ~l~~~~~~~~v~~vVvDEah~~~~~~~---~~r~~~~~l~~l~~~~~~~~~i~lSAT 181 (323)
.+.........+++|+|-...+..... ..+.....|..+.... ++.+++++-.
T Consensus 126 ~~~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~-~i~vi~~~q~ 181 (251)
T 2zts_A 126 YIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM-GVTTILTTEA 181 (251)
T ss_dssp HHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH-CCEEEEEECC
T ss_pred HHHHHHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHc-CCCeEEEEEE
Confidence 344444455789999999887653211 1222223333333222 6777766543
No 233
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=76.29 E-value=1.8 Score=31.85 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=31.7
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCe-EEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~-v~~~h~~~~ 274 (323)
++.+++|||.+-..+...+..|+..|+. +..+.|++.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 5688999999998999999999999985 888887753
No 234
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=76.23 E-value=8.3 Score=33.57 Aligned_cols=96 Identities=17% Similarity=0.125 Sum_probs=53.5
Q ss_pred HHHHHHhc------CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh----hhhhcC
Q psy4493 30 AAINIALL------KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----LLKKKK 99 (323)
Q Consensus 30 ~~~~~~~~------~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs----~l~~~~ 99 (323)
..+..++- +.-..+..|+|.|||.-+...+.. ....+..++++....+ ...+.|
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~----------------~~~~gg~VlyId~E~s~~~~ra~rlg 110 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAE----------------AQKMGGVAAFIDAEHALDPVYAKNLG 110 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHH----------------HHHTTCCEEEEESSCCCCHHHHHHHT
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHH----------------HHhcCCeEEEEecccccchHHHHHcC
Confidence 34555554 223556779999999765555433 1124566766655544 333444
Q ss_pred eeeeccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEecccccc
Q psy4493 100 ICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCS 150 (323)
Q Consensus 100 i~l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~ 150 (323)
+.. .++.+..|..+. .....++........+++|||++-.+.
T Consensus 111 v~~------~~l~i~~~~~~e---~~l~~~~~l~~~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 111 VDL------KSLLISQPDHGE---QALEIVDELVRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp CCG------GGCEEECCSSHH---HHHHHHHHHHHTSCCSEEEEECTTTCC
T ss_pred Cch------hhhhhhhccCHH---HHHHHHHHHhhhcCCCeEEehHhhhhc
Confidence 431 234455554432 222334443334678999999987664
No 235
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=75.73 E-value=0.48 Score=42.96 Aligned_cols=57 Identities=16% Similarity=0.111 Sum_probs=38.0
Q ss_pred CCCCCCcchHHHHHHHhcCCcE-EEEccchh-hhhhcCee-e-eccCCCeeEEEEccccccc
Q psy4493 64 NLTDFRPNQLAAINIALLKKDA-IIIMPTGK-LLKKKKIC-L-MTESSSLKLLYVSPEKLAK 121 (323)
Q Consensus 64 g~~~~~~~Q~~~i~~~~~~~~~-lv~~pTgs-~l~~~~i~-l-~~~~~~~~vii~Tp~~l~~ 121 (323)
|+.+++|+|+ +|+.+++++++ ++.+|||+ .....-.. + ........++|.+|-+.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La 61 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVA 61 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHH
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHH
Confidence 6788999985 79999999887 88999999 00000000 0 0011346799999988873
No 236
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=75.31 E-value=22 Score=30.65 Aligned_cols=18 Identities=11% Similarity=-0.042 Sum_probs=14.0
Q ss_pred CCCeEEEcCCCCCchHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRV 55 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~ 55 (323)
.+.+++..|+|.|||..+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 345888999999999543
No 237
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=74.98 E-value=2.3 Score=31.32 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=30.9
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCe-EEeecCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKL 273 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~-v~~~h~~~ 273 (323)
++.+++|||.+-..+...+..|.+.|+. +..+.||+
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 126 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSM 126 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcH
Confidence 4678999999999999999999999984 77787765
No 238
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=74.85 E-value=23 Score=31.75 Aligned_cols=56 Identities=16% Similarity=0.161 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhCCcc--eEEEeccccccccC-CCchH-HHH----hHHHHHhhCCCCCEEEEeec
Q psy4493 125 FMTKLQKMYKAGCLA--RIAIDEVHCCSSWG-HDFRP-DYQ----YLSILKTMFPDVPILGLTAT 181 (323)
Q Consensus 125 ~~~~l~~~~~~~~v~--~vVvDEah~~~~~~-~~~r~-~~~----~l~~l~~~~~~~~~i~lSAT 181 (323)
+...++.......++ +||||-...+...+ ...|. .+. .|..+...+ +++++++|-.
T Consensus 296 i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~-~v~vi~lsql 359 (444)
T 3bgw_A 296 IWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMAREL-DVVVIALSQL 359 (444)
T ss_dssp HHHHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHH-TCEEEEEEEC
T ss_pred HHHHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHh-CCeEEEEecC
Confidence 333444443445799 99999999876422 11222 222 222222222 7788877653
No 239
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=74.74 E-value=21 Score=31.94 Aligned_cols=47 Identities=17% Similarity=0.101 Sum_probs=27.4
Q ss_pred CCcceEEEecccccc--ccCCCchHHHHhHHHHHhh-CCCCCEEEEeecCChhH
Q psy4493 136 GCLARIAIDEVHCCS--SWGHDFRPDYQYLSILKTM-FPDVPILGLTATATTKV 186 (323)
Q Consensus 136 ~~v~~vVvDEah~~~--~~~~~~r~~~~~l~~l~~~-~~~~~~i~lSAT~~~~~ 186 (323)
...+++|||++-+.. .. ......+..+... .++..++.++|+...+.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d----~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a 227 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEE----TKLLEEMKEMYDVLKPDDVILVIDASIGQKA 227 (433)
T ss_dssp TTCSEEEEEECCCSSSCCT----THHHHHHHHHHHHHCCSEEEEEEEGGGGGGG
T ss_pred cCCCEEEEECCCCccccCC----HHHHHHHHHHHHhhCCcceEEEEeCccchHH
Confidence 478999999997654 21 1222333333332 34556777888876544
No 240
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=74.64 E-value=30 Score=29.82 Aligned_cols=17 Identities=12% Similarity=-0.019 Sum_probs=13.6
Q ss_pred CCeEEEcCCCCCchHHH
Q psy4493 39 KDAIIIMPTDYPWSDRV 55 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~ 55 (323)
+.+++..|+|.|||..+
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 45888999999999543
No 241
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=74.61 E-value=7.6 Score=33.29 Aligned_cols=86 Identities=10% Similarity=0.042 Sum_probs=52.1
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhc--CCcEEEEccchh----hhhhcCeeeeccCCCeeEEEE
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL--KKDAIIIMPTGK----LLKKKKICLMTESSSLKLLYV 114 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~--~~~~lv~~pTgs----~l~~~~i~l~~~~~~~~vii~ 114 (323)
..+..|+|.|||.-....+.+ .| .+ +..++.+....+ ...++|+++ .++++.
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~---------~~-------~~g~g~~vlyId~E~s~~~~ra~~lGvd~------d~llv~ 88 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSS---------YM-------RQYPDAVCLFYDSEFGITPAYLRSMGVDP------ERVIHT 88 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHH---------HH-------HHCTTCEEEEEESSCCCCHHHHHHTTCCG------GGEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH---------HH-------hcCCCceEEEEeccchhhHHHHHHhCCCH------HHeEEE
Confidence 455669999999766655544 11 22 556777666655 555666552 246777
Q ss_pred cccccccchhHHHHHHHH--HhhCCcceEEEecccccc
Q psy4493 115 SPEKLAKSKSFMTKLQKM--YKAGCLARIAIDEVHCCS 150 (323)
Q Consensus 115 Tp~~l~~~~~~~~~l~~~--~~~~~v~~vVvDEah~~~ 150 (323)
.|..+.. .....++.. ....++++||||-+-.+.
T Consensus 89 ~~~~~E~--~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 89 PVQSLEQ--LRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp ECSBHHH--HHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred cCCCHHH--HHHHHHHHHHHhhccCceEEEEecccccc
Confidence 7766532 102222222 233578999999998875
No 242
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=74.35 E-value=8.4 Score=41.48 Aligned_cols=88 Identities=15% Similarity=0.127 Sum_probs=54.1
Q ss_pred CCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh----hhhhcCeeeeccCCCeeEEE
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----LLKKKKICLMTESSSLKLLY 113 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs----~l~~~~i~l~~~~~~~~vii 113 (323)
++.+++..|+|.|||.-....+. .+...|..++.+...++ .....|+++.. +.|
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~----------------ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~------l~v 1484 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIA----------------AAQREGKTCAFIDAEHALDPIYARKLGVDIDN------LLC 1484 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH----------------HHHTTTCCEEEECTTSCCCHHHHHHTTCCTTT------CEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHH----------------HHHHcCCcEEEEEcccccCHHHHHHcCCCchh------cee
Confidence 56688888999999955444332 23346777877777765 44455655321 455
Q ss_pred EcccccccchhHHHHHHHHHhhCCcceEEEecccccc
Q psy4493 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCS 150 (323)
Q Consensus 114 ~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~ 150 (323)
..|+... .+...++.......+++|||||..-+.
T Consensus 1485 ~~~~~~E---~~l~~~~~lvr~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1485 SQPDTGE---QALEICDALARSGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp ECCSSHH---HHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ecCChHH---HHHHHHHHHHhcCCCCEEEEcChhHhc
Confidence 5565332 333344444334689999999997554
No 243
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=74.34 E-value=4 Score=41.99 Aligned_cols=60 Identities=10% Similarity=0.121 Sum_probs=40.5
Q ss_pred CCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 22 TDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
..+.+.|.+++... +++++|.+..|+|||..+..-+...+.-.. . -....+++++.+|..
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~-~---------~~~~~~il~~Tft~~ 68 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE-N---------PIDVDRLLVVTFTNA 68 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS-S---------CCCGGGEEEECSSHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC-C---------CCCccceEEEeccHH
Confidence 45788999988753 778999999999999887665443211000 0 002246999999987
No 244
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=73.97 E-value=2.8 Score=31.06 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=31.3
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCe-EEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~-v~~~h~~~~ 274 (323)
++.+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 5678999999999999999999999984 777777654
No 245
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=73.19 E-value=2.7 Score=40.82 Aligned_cols=76 Identities=12% Similarity=0.044 Sum_probs=52.6
Q ss_pred EcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcC-CcEEEEccchh--hh--hhcCeee-eccCCCeeEEEEccc
Q psy4493 44 IMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLK-KDAIIIMPTGK--LL--KKKKICL-MTESSSLKLLYVSPE 117 (323)
Q Consensus 44 ~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~~pTgs--~l--~~~~i~l-~~~~~~~~vii~Tp~ 117 (323)
...++.|.+..+.+.+... + ..|.+.|+++|+.++.+ +++++++|||+ .+ ...-... ........+++..|-
T Consensus 72 ~~f~~~~l~~~~~~~l~~r-~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~ 149 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIR-R-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPR 149 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHH-T-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESC
T ss_pred CCccccCCCHHHHHHHHHh-h-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCch
Confidence 4578899999999998874 4 67888999999887765 67999999999 11 1110000 111124568888898
Q ss_pred cccc
Q psy4493 118 KLAK 121 (323)
Q Consensus 118 ~l~~ 121 (323)
+.+.
T Consensus 150 r~La 153 (773)
T 2xau_A 150 RVAA 153 (773)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7763
No 246
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=72.88 E-value=3 Score=30.47 Aligned_cols=37 Identities=19% Similarity=0.074 Sum_probs=32.2
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCC-eEEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~v~~~h~~~~ 274 (323)
++.+++|||.+=..+...+..|.+.|+ ++..+.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 467899999998888899999999998 5888889884
No 247
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=71.44 E-value=55 Score=29.29 Aligned_cols=46 Identities=13% Similarity=0.131 Sum_probs=25.1
Q ss_pred CcceEEEeccccccccCCCchHHHHhHHHHHhhC-CCCCEEEEeecCChhH
Q psy4493 137 CLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF-PDVPILGLTATATTKV 186 (323)
Q Consensus 137 ~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~ 186 (323)
..+++|||.+=.... -......+..+.... |+..++.+.||.....
T Consensus 182 ~~DvVIIDTaGrl~~----d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a 228 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKE----DKALIEEMKQISNVIHPHEVILVIDGTIGQQA 228 (443)
T ss_dssp TCSEEEEECCCCSSC----CHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH
T ss_pred CCCEEEEECCCcccc----hHHHHHHHHHHHHhhcCceEEEEEeCCCchhH
Confidence 578899998854432 122333343333332 4545667778765444
No 248
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=71.27 E-value=2.1 Score=39.04 Aligned_cols=73 Identities=18% Similarity=0.189 Sum_probs=44.8
Q ss_pred CCCcchHHHHHHHh----cCCcEEEEccchh--hhhhcCee--eeccCCCeeEEEEcccccccchhHHHHHHHHHhhCCc
Q psy4493 67 DFRPNQLAAINIAL----LKKDAIIIMPTGK--LLKKKKIC--LMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCL 138 (323)
Q Consensus 67 ~~~~~Q~~~i~~~~----~~~~~lv~~pTgs--~l~~~~i~--l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v 138 (323)
.|+|+|.++++.+. .++++++..|||+ .+....+- +........++|.+|..++. +|.+.++... ..+
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~--qw~~e~~~~~--~~~ 112 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLK--NWEEELSKFA--PHL 112 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHH--HHHHHHHHHC--TTS
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHHHHH--HHHHHHHHHC--CCc
Confidence 57899999998763 4688999999999 21111110 11122234677778877763 6766666532 245
Q ss_pred ceEEE
Q psy4493 139 ARIAI 143 (323)
Q Consensus 139 ~~vVv 143 (323)
+..++
T Consensus 113 ~v~~~ 117 (500)
T 1z63_A 113 RFAVF 117 (500)
T ss_dssp CEEEC
T ss_pred eEEEE
Confidence 55554
No 249
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=70.51 E-value=12 Score=39.72 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=61.3
Q ss_pred CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh----hhhhcCeeeeccCCCeeEEEE
Q psy4493 39 KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----LLKKKKICLMTESSSLKLLYV 114 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs----~l~~~~i~l~~~~~~~~vii~ 114 (323)
+-+.+..|+|+|||.-....+.+ +...|..++.+.+..+ .+++.|+++.. +++.
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~----------------~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~------l~~~ 1489 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAA----------------AQREGKTCAFIDAEHALDPIYARKLGVDIDN------LLCS 1489 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH----------------HHHTTCCEEEECTTSCCCHHHHHHTTCCGGG------CEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH----------------HHhcCCeEEEEecCCCCCHHHHHHcCCCHHH------eEEe
Confidence 44667779999999776666644 1235777877777766 77788887432 7788
Q ss_pred cccccccchhHHHHHHHHHhhCCcceEEEeccccccc
Q psy4493 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 115 Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~ 151 (323)
-|+.-. ..............+++||||.+-.+..
T Consensus 1490 ~p~~~e---~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1490 QPDTGE---QALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp CCSSHH---HHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred CCCcHH---HHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 886652 2233455555557899999999998764
No 250
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=70.44 E-value=3 Score=41.97 Aligned_cols=64 Identities=25% Similarity=0.201 Sum_probs=41.0
Q ss_pred CCCcchHHHHHHHhc--------------CCcEEEEccchh--hhhhcCe-e-eeccCCCeeEEEEcccccccchhHHHH
Q psy4493 67 DFRPNQLAAINIALL--------------KKDAIIIMPTGK--LLKKKKI-C-LMTESSSLKLLYVSPEKLAKSKSFMTK 128 (323)
Q Consensus 67 ~~~~~Q~~~i~~~~~--------------~~~~lv~~pTgs--~l~~~~i-~-l~~~~~~~~vii~Tp~~l~~~~~~~~~ 128 (323)
.|+++|.+|++.+++ ++++++++|||+ .+....+ . +.......+++|.||-+-+. .++...
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~-~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLD-YQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCC-HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHH-HHHHHH
Confidence 589999999998865 368999999999 1111111 1 11112235899999977764 344444
Q ss_pred HHH
Q psy4493 129 LQK 131 (323)
Q Consensus 129 l~~ 131 (323)
+..
T Consensus 350 f~~ 352 (1038)
T 2w00_A 350 YQR 352 (1038)
T ss_dssp HHT
T ss_pred HHH
Confidence 443
No 251
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=70.29 E-value=5.2 Score=38.52 Aligned_cols=38 Identities=8% Similarity=0.060 Sum_probs=30.3
Q ss_pred CCCChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHh
Q psy4493 22 TDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
..+.+.|++++.. ...+++|.++.|+|||..+..-+..
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ 47 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAY 47 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHH
Confidence 4688999998874 3567899999999999877665544
No 252
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=68.88 E-value=20 Score=28.58 Aligned_cols=23 Identities=0% Similarity=-0.227 Sum_probs=16.8
Q ss_pred CCCeEEEcCCCCCchHHHHHHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLK 60 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~ 60 (323)
+.-..+..|+|.|||.-+...+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 44567788999999976655554
No 253
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=68.72 E-value=0.56 Score=44.86 Aligned_cols=55 Identities=7% Similarity=0.068 Sum_probs=35.6
Q ss_pred CCCcchH-----HHHHHHh------cCCcEEEEccchh-hhhhcCee-e-eccCCCeeEEEEccccccc
Q psy4493 67 DFRPNQL-----AAINIAL------LKKDAIIIMPTGK-LLKKKKIC-L-MTESSSLKLLYVSPEKLAK 121 (323)
Q Consensus 67 ~~~~~Q~-----~~i~~~~------~~~~~lv~~pTgs-~l~~~~i~-l-~~~~~~~~vii~Tp~~l~~ 121 (323)
.|+++|+ ++|+.++ +++++++++|||+ .....-+. + ........++|.+|-+.+.
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La 283 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVA 283 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHH
Confidence 8999999 9999888 8999999999999 00000011 0 0012346799999988873
No 254
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=67.93 E-value=2.6 Score=39.09 Aligned_cols=30 Identities=17% Similarity=0.158 Sum_probs=21.4
Q ss_pred CCCCCCCcchHHHHHH----HhcCCcEEEEccchh
Q psy4493 63 FNLTDFRPNQLAAINI----ALLKKDAIIIMPTGK 93 (323)
Q Consensus 63 ~g~~~~~~~Q~~~i~~----~~~~~~~lv~~pTgs 93 (323)
.|+ .+++.|.+++.. +..++++++.+|||+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGt 37 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGL 37 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTS
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 466 789999998654 467899999999998
No 255
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=67.81 E-value=14 Score=31.89 Aligned_cols=21 Identities=0% Similarity=-0.219 Sum_probs=15.5
Q ss_pred eEEEcCCCCCchHHHHHHHHh
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~ 61 (323)
..+..|+|+|||..+...+.+
T Consensus 125 ~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567779999999766655543
No 256
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=64.87 E-value=51 Score=35.71 Aligned_cols=87 Identities=15% Similarity=0.136 Sum_probs=52.2
Q ss_pred CCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh----hhhhcCeeeeccCCCeeEEEE
Q psy4493 39 KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----LLKKKKICLMTESSSLKLLYV 114 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs----~l~~~~i~l~~~~~~~~vii~ 114 (323)
.-.++..|+|+|||.-....+.+ ....+..++++.-..+ .....|+++ -++.|.
T Consensus 384 ~lilI~G~pGsGKTtLaLqia~~----------------~a~~G~~vlyis~E~s~~~~~a~~lGvd~------~~L~I~ 441 (2050)
T 3cmu_A 384 RIVEIYGPESSGKTTLTLQVIAA----------------AQREGKTCAFIDAEHALDPIYARKLGVDI------DNLLCS 441 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH----------------HHTTTCCEEEECTTSCCCHHHHHHTTCCT------TTCEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH----------------HHhcCCeEEEEEcCCCHHHHHHHHcCCCH------HHeEEe
Confidence 33556779999999765555543 1234566766665554 334455441 134555
Q ss_pred cccccccchhHHHHHHHHHhhCCcceEEEecccccc
Q psy4493 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCS 150 (323)
Q Consensus 115 Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~ 150 (323)
.|..+. .+...++.......+++||||....+.
T Consensus 442 ~~~~~e---~il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 442 QPDTGE---QALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp CCSSHH---HHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred CCCCHH---HHHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 565442 333444444344689999999999886
No 257
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=64.65 E-value=6.9 Score=32.52 Aligned_cols=38 Identities=13% Similarity=0.054 Sum_probs=33.2
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCC-eEEeecCCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKLES 275 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~v~~~h~~~~~ 275 (323)
++.+++|||.+-..+...+..|...|+ ++..|.|++..
T Consensus 229 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 229 YDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE 267 (280)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred CCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHH
Confidence 568899999999899999999999998 58889998764
No 258
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=64.60 E-value=30 Score=36.69 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=51.0
Q ss_pred CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh----hhhhcCeeeeccCCCeeEEEEc
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK----LLKKKKICLMTESSSLKLLYVS 115 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs----~l~~~~i~l~~~~~~~~vii~T 115 (323)
-+++..|+|.|||.-+.....+ ....+..++++.-..+ .....|+++ .++.+..
T Consensus 734 lVlI~G~PG~GKTtLal~lA~~----------------aa~~g~~VlyiS~Ees~~ql~A~~lGvd~------~~L~i~~ 791 (1706)
T 3cmw_A 734 IVEIYGPESSGKTTLTLQVIAA----------------AQREGKTCAFIDAEHALDPIYARKLGVDI------DNLLCSQ 791 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH----------------HHHTTCCEEEECTTSCCCHHHHHHTTCCG------GGCEEEC
T ss_pred eEEEECCCCCCcHHHHHHHHHH----------------HHHcCCCeEEEeccchHHHHHHHHcCCCh------hheEEec
Confidence 4666779999999765555433 1224556666655444 233344442 1345555
Q ss_pred ccccccchhHHHHHHHHHhhCCcceEEEecccccc
Q psy4493 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCS 150 (323)
Q Consensus 116 p~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~ 150 (323)
+..+. .+...++.......+++||||+...+.
T Consensus 792 ~~~le---ei~~~l~~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 792 PDTGE---QALEICDALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp CSSHH---HHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred CCcHH---HHHHHHHHHHHccCCCEEEEechhhhc
Confidence 55442 334444443334589999999999886
No 259
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=62.76 E-value=2.9 Score=33.13 Aligned_cols=19 Identities=11% Similarity=0.053 Sum_probs=13.8
Q ss_pred eEEEcCCCCCchHHHHHHH
Q psy4493 41 AIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l 59 (323)
.++..+.|+|||......+
T Consensus 8 ~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 3567799999997655543
No 260
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=62.40 E-value=11 Score=31.36 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=31.3
Q ss_pred CCCcEEEEeCChhHHHHHHHHHH-hCCC-eEEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELR-NRGL-RVSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~-~~~~-~v~~~h~~~~ 274 (323)
++.+++|||.+-..+...+..|. ..|+ ++..+.|++.
T Consensus 232 ~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 270 (285)
T 1uar_A 232 KDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWT 270 (285)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHH
Confidence 56789999999888989999999 8898 6888888753
No 261
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=61.89 E-value=6.3 Score=29.65 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=30.2
Q ss_pred CCcEEEEeCCh---------hHHHHHHHHHHhCCCeEEeecCCCC
Q psy4493 239 NQSGIIYTTSI---------KECEDLREELRNRGLRVSAYHAKLE 274 (323)
Q Consensus 239 ~~~~iVF~~s~---------~~~~~l~~~L~~~~~~v~~~h~~~~ 274 (323)
+.+++|||.+- ..+..++..|...|+++..+.||+.
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~ 137 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 137 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHH
Confidence 57999999887 3578889999999999988888754
No 262
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=60.13 E-value=6.8 Score=34.96 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=29.4
Q ss_pred cCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchhh
Q psy4493 37 LKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKL 94 (323)
Q Consensus 37 ~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs~ 94 (323)
...+.+++++||+|||..+...+.. .+..|..++|.=|.|..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~----------------~~~~g~~viv~Dpkge~ 93 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYT----------------GLLRGDRMVIVDPNGDM 93 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHH----------------HHHTTCEEEEEEETTHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHH----------------HHHCCCcEEEEeCCCch
Confidence 4567999999999999765444432 12245667888888773
No 263
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=59.82 E-value=7.4 Score=31.30 Aligned_cols=37 Identities=22% Similarity=0.175 Sum_probs=31.8
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~ 274 (323)
++.++++||.+-..+...+..|...|.++..|.|++.
T Consensus 183 ~~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~ 219 (230)
T 2eg4_A 183 PGQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMH 219 (230)
T ss_dssp TTCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHH
T ss_pred CCCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHH
Confidence 5678999999999999999999999977888877653
No 264
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=58.93 E-value=8.2 Score=32.75 Aligned_cols=42 Identities=5% Similarity=-0.050 Sum_probs=23.9
Q ss_pred CCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCC
Q psy4493 136 GCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATAT 183 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~ 183 (323)
.+.+++||||||.+... ....|.......|...++.+.++-+
T Consensus 81 ~~~kvviIdead~lt~~------a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQ------AANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp SSSEEEEETTGGGBCHH------HHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred CCceEEEeccHHHhCHH------HHHHHHHHHhCCCCCeEEEEEECCh
Confidence 45789999999998642 1233333444444444444544433
No 265
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=58.91 E-value=6.8 Score=30.56 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=17.8
Q ss_pred CCeEEEcCCCCCchHHHHHHHHh
Q psy4493 39 KDAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
+.++++.|.|.||+..+..++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999766555544
No 266
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=58.80 E-value=6.5 Score=32.64 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=33.1
Q ss_pred cCCCcEEEEeCChhHHHHHHHHHHhCCC-eEEeecCCCC
Q psy4493 237 FRNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKLE 274 (323)
Q Consensus 237 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~v~~~h~~~~ 274 (323)
.++.++++||.+-..|...+..|.+.|+ ++..+.||+.
T Consensus 179 ~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~ 217 (265)
T 4f67_A 179 KKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGIL 217 (265)
T ss_dssp GTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 3678999999999999999999999998 5888888854
No 267
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=58.76 E-value=30 Score=31.48 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=25.6
Q ss_pred CcceEEEeccccccccCC---C-c-hHHHHhH-HHHHhhCCCCCEEEEeecCCh
Q psy4493 137 CLARIAIDEVHCCSSWGH---D-F-RPDYQYL-SILKTMFPDVPILGLTATATT 184 (323)
Q Consensus 137 ~v~~vVvDEah~~~~~~~---~-~-r~~~~~l-~~l~~~~~~~~~i~lSAT~~~ 184 (323)
.-.++++||+|.+..... + . +.....| ..+........++.+.||-.+
T Consensus 297 ~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 446899999998864211 1 0 0111222 223333335567777787554
No 268
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=58.06 E-value=14 Score=35.15 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=35.8
Q ss_pred CCChhHHHHHHHHhc----CC-CeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 23 DFRPNQLAAINIALL----KK-DAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 23 ~~~~~Q~~~~~~~~~----~~-~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
.+++.|.++++.+.. +. ...+...||+|||..+...+.. .++.+||++|+..
T Consensus 8 ~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~-------------------~~~~~lvv~~~~~ 64 (664)
T 1c4o_A 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEA-------------------LGRPALVLAPNKI 64 (664)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHH-------------------HTCCEEEEESSHH
T ss_pred CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHH-------------------hCCCEEEEecCHH
Confidence 677788888776542 32 3567889999999665555433 1456788888877
No 269
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=57.55 E-value=1.3 Score=41.78 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=39.0
Q ss_pred CCCCCcchHHHHHHHhcCCcEEEEccchh-hhhhcCee-e-eccCCCeeEEEEccccccc
Q psy4493 65 LTDFRPNQLAAINIALLKKDAIIIMPTGK-LLKKKKIC-L-MTESSSLKLLYVSPEKLAK 121 (323)
Q Consensus 65 ~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs-~l~~~~i~-l-~~~~~~~~vii~Tp~~l~~ 121 (323)
...++|+|+.+++.+++++++++.+|||+ ......+. + ........++|.+|-+.+.
T Consensus 169 ~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa 228 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVA 228 (618)
T ss_dssp CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHH
T ss_pred cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHH
Confidence 36778898888999999999999999999 11110011 0 0011346799999988873
No 270
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=56.85 E-value=11 Score=31.09 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=31.2
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCC-eEEeecCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKL 273 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~v~~~h~~~ 273 (323)
++.+++|||.+-..+...+..|...|+ ++..+.|++
T Consensus 222 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 258 (271)
T 1e0c_A 222 PDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSW 258 (271)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcH
Confidence 568999999998889999999999998 488887764
No 271
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=56.67 E-value=18 Score=31.25 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=29.5
Q ss_pred CCCCcHHHHHHHHHhcCCCCCChhHHHHHHHHh------------------cCCCeEEEcCCCCCchHH
Q psy4493 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIAL------------------LKKDAIIIMPTDYPWSDR 54 (323)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~------------------~~~~~~~~~~tg~gkt~~ 54 (323)
++|+..++.+.|.+..-.. +...+.+.... ....+++..|+|.|||..
T Consensus 2 ~~~~~~~l~~~l~~~i~G~---~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 2 ALPTPHEIRNHLDDYVIGQ---EQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCCCHHHHHHHHHHHCCSC---HHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHH
T ss_pred CCCCHHHHHHHHHhhccCH---HHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHH
Confidence 4677777888887762211 22222222222 346789999999999953
No 272
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.66 E-value=1.1e+02 Score=27.00 Aligned_cols=15 Identities=20% Similarity=0.173 Sum_probs=13.2
Q ss_pred CCCeEEEcCCCCCch
Q psy4493 38 KKDAIIIMPTDYPWS 52 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt 52 (323)
.+.+++..|+|.|||
T Consensus 182 prGvLL~GPPGTGKT 196 (405)
T 4b4t_J 182 PKGVILYGPPGTGKT 196 (405)
T ss_dssp CCCEEEESCSSSSHH
T ss_pred CCceEEeCCCCCCHH
Confidence 466899999999999
No 273
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=55.65 E-value=13 Score=28.20 Aligned_cols=31 Identities=10% Similarity=-0.135 Sum_probs=21.1
Q ss_pred hhHHHHHHHHh---------cCCCeEEEcCCCCCchHHHH
Q psy4493 26 PNQLAAINIAL---------LKKDAIIIMPTDYPWSDRVR 56 (323)
Q Consensus 26 ~~Q~~~~~~~~---------~~~~~~~~~~tg~gkt~~~~ 56 (323)
+.|..+++... .++.+++..|+|.|||.-+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 35666665543 35667888899999995443
No 274
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=54.89 E-value=28 Score=24.07 Aligned_cols=34 Identities=6% Similarity=0.090 Sum_probs=27.0
Q ss_pred hcCCCcEEEEeC------ChhHHHHHHHHHHhCCCeEEee
Q psy4493 236 RFRNQSGIIYTT------SIKECEDLREELRNRGLRVSAY 269 (323)
Q Consensus 236 ~~~~~~~iVF~~------s~~~~~~l~~~L~~~~~~v~~~ 269 (323)
.....+++||.. ....|....+.|.+.|+....+
T Consensus 14 ~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~ 53 (109)
T 3ipz_A 14 LVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDV 53 (109)
T ss_dssp HHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEE
T ss_pred HHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEE
Confidence 335689999997 4899999999999988764443
No 275
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=53.71 E-value=14 Score=31.56 Aligned_cols=23 Identities=0% Similarity=-0.231 Sum_probs=16.2
Q ss_pred CCeEEEcCCCCCchHHHHHHHHh
Q psy4493 39 KDAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
.-..+..|+|.|||..+...+.+
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHH
Confidence 33566779999999766555543
No 276
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=53.39 E-value=16 Score=32.45 Aligned_cols=36 Identities=11% Similarity=0.056 Sum_probs=23.6
Q ss_pred CChhHHHHHHHHhcCC--CeEEEcCCCCCchHHHHHHH
Q psy4493 24 FRPNQLAAINIALLKK--DAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 24 ~~~~Q~~~~~~~~~~~--~~~~~~~tg~gkt~~~~~~l 59 (323)
+.+.+...++.++..+ -+.++.|||+|||.-+...+
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~all 188 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGL 188 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHH
Confidence 4556666676655432 35678899999997655444
No 277
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.70 E-value=1.2e+02 Score=27.03 Aligned_cols=16 Identities=13% Similarity=0.054 Sum_probs=13.3
Q ss_pred CCCeEEEcCCCCCchH
Q psy4493 38 KKDAIIIMPTDYPWSD 53 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~ 53 (323)
.+.+++..|+|.|||.
T Consensus 215 prGvLL~GPPGtGKTl 230 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTL 230 (437)
T ss_dssp CCEEEEESCTTSSHHH
T ss_pred CCeEEEECCCCCcHHH
Confidence 3568889999999983
No 278
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=52.68 E-value=95 Score=25.44 Aligned_cols=18 Identities=11% Similarity=0.030 Sum_probs=14.3
Q ss_pred CCCeEEEcCCCCCchHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRV 55 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~ 55 (323)
.+.+++..|+|.|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 456888999999999543
No 279
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=52.07 E-value=6.5 Score=33.01 Aligned_cols=57 Identities=9% Similarity=0.052 Sum_probs=26.3
Q ss_pred CCCCCCCcHHHHHHHHHhcCCCCCChhHHHHHHHHhc-CC--CeEEEcCCCCCchHHHHHHHH
Q psy4493 1 MLPNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL-KK--DAIIIMPTDYPWSDRVRSVLK 60 (323)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~Q~~~~~~~~~-~~--~~~~~~~tg~gkt~~~~~~l~ 60 (323)
|....||..+++-.- +..-.-++...+.+...+. ++ ++++..|+|.|||..+.....
T Consensus 1 m~~~~~~~~k~~p~~---~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 1 MENFEIWVEKYRPRT---LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp -----CTTTTTSCSS---GGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHH
T ss_pred CCccccHHHhcCCCC---HHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHH
Confidence 666678876522211 1101112333344443333 22 488899999999965544443
No 280
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.86 E-value=1.4e+02 Score=26.97 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=12.8
Q ss_pred CCCeEEEcCCCCCch
Q psy4493 38 KKDAIIIMPTDYPWS 52 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt 52 (323)
.+.+++..|+|.|||
T Consensus 243 prGILLyGPPGTGKT 257 (467)
T 4b4t_H 243 PKGILLYGPPGTGKT 257 (467)
T ss_dssp CSEEEECSCTTSSHH
T ss_pred CCceEeeCCCCCcHH
Confidence 456888899999999
No 281
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=51.36 E-value=24 Score=26.18 Aligned_cols=48 Identities=13% Similarity=0.200 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhcCCCcEEEE-e-CChhHHH----HHHHHHHhCCC---eEEeecCCCCC
Q psy4493 226 LDELADLMSRRFRNQSGIIY-T-TSIKECE----DLREELRNRGL---RVSAYHAKLES 275 (323)
Q Consensus 226 ~~~l~~~l~~~~~~~~~iVF-~-~s~~~~~----~l~~~L~~~~~---~v~~~h~~~~~ 275 (323)
+..+...+.. .+.+.+|| | .+-..+. .++..|.+.|+ ++..+.||+..
T Consensus 56 ~~~l~~~l~~--~~~~~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~~ 112 (152)
T 2j6p_A 56 YEKLAKTLFE--EKKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEA 112 (152)
T ss_dssp HHHHHHHHHH--TTCCEEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHHH
T ss_pred HHHHHHHhcc--cCCCEEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHHH
Confidence 4445444442 34455555 9 4544433 44477888886 68888887643
No 282
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=50.53 E-value=64 Score=29.19 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=17.3
Q ss_pred HHHHHHHHhhCCcceEEEeccccccc
Q psy4493 126 MTKLQKMYKAGCLARIAIDEVHCCSS 151 (323)
Q Consensus 126 ~~~l~~~~~~~~v~~vVvDEah~~~~ 151 (323)
...++.......+++||||=...+..
T Consensus 343 ~~~i~~~~~~~~~~lvVID~l~~l~~ 368 (503)
T 1q57_A 343 LAKLAYMRSGLGCDVIILDHISIVVS 368 (503)
T ss_dssp HHHHHHHHHTTCCSEEEEECTTCCCS
T ss_pred HHHHHHHHHhcCCCEEEEccchhcCC
Confidence 33444444445799999998887653
No 283
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=50.01 E-value=18 Score=29.99 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=29.7
Q ss_pred CCCcEEEEeCChhH-HHHHHHHHHhCCC-eEEeecCCC
Q psy4493 238 RNQSGIIYTTSIKE-CEDLREELRNRGL-RVSAYHAKL 273 (323)
Q Consensus 238 ~~~~~iVF~~s~~~-~~~l~~~L~~~~~-~v~~~h~~~ 273 (323)
++.+++|||.+-.. +...+..|+..|+ ++..+.|++
T Consensus 85 ~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~ 122 (280)
T 1urh_A 85 QDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGL 122 (280)
T ss_dssp TTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCH
Confidence 56889999998665 8888999999998 588888764
No 284
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=49.87 E-value=8.7 Score=27.30 Aligned_cols=34 Identities=9% Similarity=-0.044 Sum_probs=27.4
Q ss_pred CcEEEEeCChhHHHHHHHHHHhC------CC-eEEeecCCC
Q psy4493 240 QSGIIYTTSIKECEDLREELRNR------GL-RVSAYHAKL 273 (323)
Q Consensus 240 ~~~iVF~~s~~~~~~l~~~L~~~------~~-~v~~~h~~~ 273 (323)
.+++|||.+-..+...+..|.+. |+ ++..+.|++
T Consensus 73 ~~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~ 113 (127)
T 3i2v_A 73 VPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGL 113 (127)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHH
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCH
Confidence 48999999988888899999887 33 677777765
No 285
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=49.27 E-value=9.5 Score=38.10 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=45.6
Q ss_pred CCCCcchHHHHHHHhcC--CcEEEEccchh--hhhhcCee--eeccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcc
Q psy4493 66 TDFRPNQLAAINIALLK--KDAIIIMPTGK--LLKKKKIC--LMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLA 139 (323)
Q Consensus 66 ~~~~~~Q~~~i~~~~~~--~~~lv~~pTgs--~l~~~~i~--l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~ 139 (323)
..|+|+|.+++..++.. .+++++.|||+ .+....+- +.......+++|.+|..|+. +|...+...+ .+.
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~--Qw~~E~~~~f---~l~ 226 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQH--QWLVEMLRRF---NLR 226 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHH--HHHHHHHHHS---CCC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHHH--HHHHHHHHHh---CCC
Confidence 36889999999988764 47899999999 11111000 11122234689999997763 6665554432 455
Q ss_pred eEEEe
Q psy4493 140 RIAID 144 (323)
Q Consensus 140 ~vVvD 144 (323)
+.+++
T Consensus 227 v~v~~ 231 (968)
T 3dmq_A 227 FALFD 231 (968)
T ss_dssp CEECC
T ss_pred EEEEc
Confidence 66654
No 286
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=49.18 E-value=21 Score=26.82 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=22.8
Q ss_pred ChhHHHHHHHHhc---CCCeEEEcCCCCCchHHHHHHHH
Q psy4493 25 RPNQLAAINIALL---KKDAIIIMPTDYPWSDRVRSVLK 60 (323)
Q Consensus 25 ~~~Q~~~~~~~~~---~~~~~~~~~tg~gkt~~~~~~l~ 60 (323)
++.+.+.+...+. ...+++..|+|.|||..+.....
T Consensus 27 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 27 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHH
Confidence 4555554444442 24588889999999966544443
No 287
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=48.84 E-value=14 Score=31.53 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=35.1
Q ss_pred HHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHh-CCCe-EEeecCCCC
Q psy4493 228 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRN-RGLR-VSAYHAKLE 274 (323)
Q Consensus 228 ~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~-~~~~-v~~~h~~~~ 274 (323)
.+.+.+....++.++++||.+-..+...+..|.+ .|+. +..|.|++.
T Consensus 248 ~l~~~~~~l~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~~ 296 (318)
T 3hzu_A 248 ELERLYDFINPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWT 296 (318)
T ss_dssp HHHHHTTTCCTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHHH
T ss_pred HHHHHhcCCCCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcHH
Confidence 3444443233668999999999999999999987 8984 888877753
No 288
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=48.44 E-value=88 Score=30.04 Aligned_cols=105 Identities=13% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCC--------eEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchhhhhhcCe
Q psy4493 29 LAAINIALLKKD--------AIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKI 100 (323)
Q Consensus 29 ~~~~~~~~~~~~--------~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs~l~~~~i 100 (323)
..++.....+.. +++..|+|.|||......... +.....-++....+........
T Consensus 504 ~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~-----------------l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 504 AKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES-----------------IFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp HHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH-----------------HHSCTTCEEEEEGGGGCSSCCC
T ss_pred HHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH-----------------hcCCCcceEEEechhccccccc
Q ss_pred eeeccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcceEEEeccccccccCCCchHHHHhHHHHHh-----------h
Q psy4493 101 CLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT-----------M 169 (323)
Q Consensus 101 ~l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~-----------~ 169 (323)
. ...+.........+++++||+|.+.. .....+.++ +.. .
T Consensus 567 ~------------------------~~~l~~~~~~~~~~vl~lDEi~~~~~---~~~~~Ll~~--le~g~~~~~~g~~~~ 617 (758)
T 3pxi_A 567 S------------------------GGQLTEKVRRKPYSVVLLDAIEKAHP---DVFNILLQV--LEDGRLTDSKGRTVD 617 (758)
T ss_dssp C---------------------------CHHHHHHCSSSEEEEECGGGSCH---HHHHHHHHH--HHHSBCC-----CCB
T ss_pred c------------------------cchhhHHHHhCCCeEEEEeCccccCH---HHHHHHHHH--hccCeEEcCCCCEec
Q ss_pred CCCCCEEEEe
Q psy4493 170 FPDVPILGLT 179 (323)
Q Consensus 170 ~~~~~~i~lS 179 (323)
+.++.+|+.|
T Consensus 618 ~~~~~iI~tt 627 (758)
T 3pxi_A 618 FRNTILIMTS 627 (758)
T ss_dssp CTTCEEEEEE
T ss_pred cCCeEEEEeC
No 289
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=47.90 E-value=10 Score=28.96 Aligned_cols=24 Identities=4% Similarity=0.156 Sum_probs=17.5
Q ss_pred cCCCeEEEcCCCCCchHHHHHHHH
Q psy4493 37 LKKDAIIIMPTDYPWSDRVRSVLK 60 (323)
Q Consensus 37 ~~~~~~~~~~tg~gkt~~~~~~l~ 60 (323)
.++-+.++.|+|.|||.-+...+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 355677888999999976555443
No 290
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.59 E-value=1.4e+02 Score=26.51 Aligned_cols=16 Identities=13% Similarity=-0.072 Sum_probs=13.2
Q ss_pred CCCeEEEcCCCCCchH
Q psy4493 38 KKDAIIIMPTDYPWSD 53 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~ 53 (323)
.+.+++..|+|.|||.
T Consensus 216 prGvLLyGPPGTGKTl 231 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTL 231 (437)
T ss_dssp CSEEEEESSTTTTHHH
T ss_pred CCCCceECCCCchHHH
Confidence 3558889999999993
No 291
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=47.34 E-value=27 Score=28.74 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=30.3
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHh-CCC-eEEeecCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRN-RGL-RVSAYHAKL 273 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~-~~~-~v~~~h~~~ 273 (323)
++.++++||.+-..+...+..|.+ .|+ ++..|.|++
T Consensus 225 ~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 262 (277)
T 3aay_A 225 NSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSW 262 (277)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred CCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchH
Confidence 568999999998888888999985 898 488888774
No 292
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=47.22 E-value=12 Score=29.48 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=18.9
Q ss_pred cCCCeEEEcCCCCCchHHHHHHHHh
Q psy4493 37 LKKDAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 37 ~~~~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
.++-++++.|+|.|||..+..++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4666788899999999766655543
No 293
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=46.99 E-value=11 Score=32.46 Aligned_cols=22 Identities=9% Similarity=-0.112 Sum_probs=16.8
Q ss_pred CeEEEcCCCCCchHHHHHHHHh
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
-++++.|||+|||.....+.+.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4667889999999776666555
No 294
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=46.71 E-value=12 Score=31.93 Aligned_cols=22 Identities=18% Similarity=0.055 Sum_probs=16.4
Q ss_pred CeEEEcCCCCCchHHHHHHHHh
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
-++++.|||+|||.......+.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 3566789999999776666554
No 295
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=46.07 E-value=1.3e+02 Score=25.18 Aligned_cols=19 Identities=0% Similarity=-0.046 Sum_probs=14.0
Q ss_pred eEEEcCCCCCchHHHHHHH
Q psy4493 41 AIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l 59 (323)
+.++.|+|.|||..+....
T Consensus 107 i~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHH
Confidence 5567799999997655544
No 296
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=45.95 E-value=31 Score=27.19 Aligned_cols=30 Identities=7% Similarity=-0.163 Sum_probs=23.6
Q ss_pred hhHHHHHHHHhcCCCeEEEcCCCCCchHHH
Q psy4493 26 PNQLAAINIALLKKDAIIIMPTDYPWSDRV 55 (323)
Q Consensus 26 ~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~ 55 (323)
..|..+++.+..+.-+.++.|.|.|||.-+
T Consensus 10 ~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 10 LGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred HhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 356667888877887888999999999543
No 297
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=45.95 E-value=19 Score=32.95 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=23.7
Q ss_pred CChhHHHHHHHHh-cCCCeEEEcCCCCCchHHHHHH
Q psy4493 24 FRPNQLAAINIAL-LKKDAIIIMPTDYPWSDRVRSV 58 (323)
Q Consensus 24 ~~~~Q~~~~~~~~-~~~~~~~~~~tg~gkt~~~~~~ 58 (323)
+.+.....+.... .+..+.++.|||+|||.-+...
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL 280 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAI 280 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHH
Confidence 4555555555443 4667888999999999665443
No 298
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=45.77 E-value=41 Score=23.33 Aligned_cols=34 Identities=9% Similarity=0.206 Sum_probs=26.8
Q ss_pred hcCCCcEEEEe------CChhHHHHHHHHHHhCCCeEEee
Q psy4493 236 RFRNQSGIIYT------TSIKECEDLREELRNRGLRVSAY 269 (323)
Q Consensus 236 ~~~~~~~iVF~------~s~~~~~~l~~~L~~~~~~v~~~ 269 (323)
.....+++||. +++..|....+.|.+.|+....+
T Consensus 12 ~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~ 51 (111)
T 3zyw_A 12 LTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSF 51 (111)
T ss_dssp HHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEE
T ss_pred HHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEE
Confidence 33568999998 57889999999999988754433
No 299
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=45.70 E-value=36 Score=27.06 Aligned_cols=34 Identities=12% Similarity=0.043 Sum_probs=29.0
Q ss_pred CCCcEEEEeCChh-HHHHHHHHHHhCCCe-EEeecCC
Q psy4493 238 RNQSGIIYTTSIK-ECEDLREELRNRGLR-VSAYHAK 272 (323)
Q Consensus 238 ~~~~~iVF~~s~~-~~~~l~~~L~~~~~~-v~~~h~~ 272 (323)
.+.+++|||.+-. .+..++..|. .|+. +..+.|+
T Consensus 60 ~~~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 60 LRSPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp CCSSEEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred CCCEEEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 3688999999877 8888999999 9984 8888887
No 300
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=45.40 E-value=27 Score=29.60 Aligned_cols=36 Identities=14% Similarity=0.031 Sum_probs=29.7
Q ss_pred CCCcEEEEeCChh-HHHHHHHHHHhCCC-eEEeecCCC
Q psy4493 238 RNQSGIIYTTSIK-ECEDLREELRNRGL-RVSAYHAKL 273 (323)
Q Consensus 238 ~~~~~iVF~~s~~-~~~~l~~~L~~~~~-~v~~~h~~~ 273 (323)
++.+++|||.+-. .+...+..|+..|+ ++..+.|++
T Consensus 110 ~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 147 (318)
T 3hzu_A 110 RDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGR 147 (318)
T ss_dssp TTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCH
Confidence 5688999998866 78889999999998 488887754
No 301
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=45.35 E-value=11 Score=32.11 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=18.7
Q ss_pred CCCeEEEcCCCCCchHHHHHHHHh
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
+..+++..|+|.|||..+...+..
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 455888899999999776666654
No 302
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=44.99 E-value=29 Score=30.72 Aligned_cols=36 Identities=11% Similarity=0.224 Sum_probs=31.1
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCC-eEEeecCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKL 273 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~v~~~h~~~ 273 (323)
++.+++|||.+-..+...+..|...|+ ++..|.|++
T Consensus 202 ~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~ 238 (423)
T 2wlr_A 202 HDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGW 238 (423)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTH
T ss_pred CCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCH
Confidence 567899999998889999999999998 588888775
No 303
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=44.90 E-value=11 Score=29.79 Aligned_cols=24 Identities=8% Similarity=0.032 Sum_probs=17.7
Q ss_pred CCCeEEEcCCCCCchHHHHHHHHh
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
++-+++..|||.|||+-...+++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 344677889999999776666554
No 304
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=44.86 E-value=14 Score=34.30 Aligned_cols=36 Identities=11% Similarity=-0.006 Sum_probs=31.7
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL 273 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~ 273 (323)
++.++++||.+-..+...+..|++.|+++..+.|++
T Consensus 540 ~~~~iv~~C~~g~rs~~a~~~l~~~G~~v~~l~GG~ 575 (588)
T 3ics_A 540 VDKDIYITCQLGMRGYVAARMLMEKGYKVKNVDGGF 575 (588)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCEEEETTHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCcEEEEcchH
Confidence 567899999999999999999999999987777765
No 305
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=44.66 E-value=9.6 Score=30.53 Aligned_cols=28 Identities=4% Similarity=0.145 Sum_probs=19.7
Q ss_pred CeEEEcCCCCCchHHHHHHHHhcCCCCCC
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKSKFNLTDF 68 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~~~g~~~~ 68 (323)
-+++..|+|+||+++.....+. ||+..+
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~-~g~~hI 58 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQK-FHFNHL 58 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHH-HCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HCCceE
Confidence 3566789999999876665554 666544
No 306
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=43.88 E-value=14 Score=30.94 Aligned_cols=37 Identities=11% Similarity=-0.080 Sum_probs=31.0
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCe-EEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~-v~~~h~~~~ 274 (323)
++.+++|||.+-.++...+..|...|+. +..|.|++.
T Consensus 239 ~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~ 276 (296)
T 1rhs_A 239 LTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWF 276 (296)
T ss_dssp TTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 5688999999988888899999999984 777777653
No 307
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=43.57 E-value=13 Score=26.85 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=28.2
Q ss_pred CCcEEEEeCChhH---------HHHHHHHHHhCCCeEEeecCCCC
Q psy4493 239 NQSGIIYTTSIKE---------CEDLREELRNRGLRVSAYHAKLE 274 (323)
Q Consensus 239 ~~~~iVF~~s~~~---------~~~l~~~L~~~~~~v~~~h~~~~ 274 (323)
+.+++|||.+-.. +..++..|...|+++..+.||+.
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~~ 127 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 127 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCHH
Confidence 4789999988654 35678889999988888888753
No 308
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=43.31 E-value=29 Score=28.42 Aligned_cols=36 Identities=14% Similarity=0.011 Sum_probs=29.2
Q ss_pred CCCcEEEEeCChh-HHHHHHHHHHhCCC-eEEeecCCC
Q psy4493 238 RNQSGIIYTTSIK-ECEDLREELRNRGL-RVSAYHAKL 273 (323)
Q Consensus 238 ~~~~~iVF~~s~~-~~~~l~~~L~~~~~-~v~~~h~~~ 273 (323)
++.+++|||.+-. .+...+..|+..|+ ++..+.||+
T Consensus 80 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~ 117 (271)
T 1e0c_A 80 PEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGL 117 (271)
T ss_dssp TTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHH
T ss_pred CCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 5678999998766 78888999999998 477787764
No 309
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=43.02 E-value=15 Score=31.22 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=16.0
Q ss_pred eEEEcCCCCCchHHHHHHHHh
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~ 61 (323)
++++.|||+|||.-.....+.
T Consensus 13 i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHh
Confidence 566789999999776666554
No 310
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=42.49 E-value=43 Score=28.44 Aligned_cols=48 Identities=13% Similarity=-0.056 Sum_probs=26.8
Q ss_pred HHHHHHhhCCcceEEEecccc-ccccCCCchHHHHhHHHHHhhCCCCCEEEEeec
Q psy4493 128 KLQKMYKAGCLARIAIDEVHC-CSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181 (323)
Q Consensus 128 ~l~~~~~~~~v~~vVvDEah~-~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT 181 (323)
.......++.-+++||||+|. +... ....|.......+...++.+.+|
T Consensus 67 ~~~~~plf~~~kvvii~~~~~kl~~~------~~~aLl~~le~p~~~~~~il~~~ 115 (343)
T 1jr3_D 67 LCQAMSLFASRQTLLLLLPENGPNAA------INEQLLTLTGLLHDDLLLIVRGN 115 (343)
T ss_dssp HHHHHHHCCSCEEEEEECCSSCCCTT------HHHHHHHHHTTCBTTEEEEEEES
T ss_pred HhcCcCCccCCeEEEEECCCCCCChH------HHHHHHHHHhcCCCCeEEEEEcC
Confidence 344444556788999999998 6431 12334334444443444445554
No 311
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=42.27 E-value=37 Score=25.14 Aligned_cols=37 Identities=8% Similarity=0.127 Sum_probs=24.7
Q ss_pred CCCcEEEEeC-ChhHHHHHHHHHH--------hCCC-eEEeecCCCC
Q psy4493 238 RNQSGIIYTT-SIKECEDLREELR--------NRGL-RVSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~-s~~~~~~l~~~L~--------~~~~-~v~~~h~~~~ 274 (323)
++.+++|||. +-..+...+..|. ..|+ ++..+.|++.
T Consensus 84 ~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~ 130 (152)
T 1t3k_A 84 DKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFN 130 (152)
T ss_dssp SCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTH
T ss_pred CCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHH
Confidence 5678899998 6555444455443 3687 6888888864
No 312
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=42.26 E-value=16 Score=33.21 Aligned_cols=70 Identities=14% Similarity=0.024 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecC--CCCCCc----ceeeecccccCCccEEEEcc
Q psy4493 226 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA--KLESNV----SIAFGLGIDKPNVRFVIHHC 297 (323)
Q Consensus 226 ~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~--~~~~~~----T~~~~~Gid~~~v~~Vi~~~ 297 (323)
+..|..+++. .+.++++.|.|...++.+.+.|.+.|+....... ...... ...++.|+-+|+...+|..+
T Consensus 371 ~~~L~~~~~~--~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~~~~~~g~v~i~~g~L~~GF~~p~~klaVITE 446 (483)
T 3hjh_A 371 LDALRKFLET--FDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICE 446 (483)
T ss_dssp THHHHHHHHH--CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCGGGCCTTCEEEEESCCCSCEEETTTTEEEEEH
T ss_pred HHHHHHHHHh--CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCchhhcCCCcEEEEEcccccCcccCCCCEEEEEc
Confidence 4566666643 4679999999999999999999998876543321 111111 56788999999888888754
No 313
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=42.26 E-value=33 Score=28.21 Aligned_cols=36 Identities=11% Similarity=-0.013 Sum_probs=28.4
Q ss_pred CCCcEEEEeCCh-hHHHHHHHHHHhCCC-eEEeecCCC
Q psy4493 238 RNQSGIIYTTSI-KECEDLREELRNRGL-RVSAYHAKL 273 (323)
Q Consensus 238 ~~~~~iVF~~s~-~~~~~l~~~L~~~~~-~v~~~h~~~ 273 (323)
++.+++|||.+- ..+...+..|...|+ ++..+.|++
T Consensus 76 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~ 113 (277)
T 3aay_A 76 NEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGR 113 (277)
T ss_dssp TTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHH
T ss_pred CCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCH
Confidence 567899999885 357788889999998 688887764
No 314
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=41.93 E-value=15 Score=29.04 Aligned_cols=27 Identities=7% Similarity=0.147 Sum_probs=19.2
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCCCC
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLTDF 68 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~~~ 68 (323)
+++..|+|+||+.+.....+. ||+..+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~-~g~~~i 29 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKE-KGFVHI 29 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHH-HCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH-HCCeEE
Confidence 456789999999776665555 666544
No 315
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=41.05 E-value=19 Score=33.16 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=31.9
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL 273 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~ 273 (323)
++.++++||.+-..+...+..|++.|+++..+.|++
T Consensus 523 ~~~~iv~~c~~g~rs~~a~~~l~~~G~~v~~l~gG~ 558 (565)
T 3ntd_A 523 KDKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGGY 558 (565)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHHTTCCEEEETTHH
T ss_pred CcCeEEEEeCCchHHHHHHHHHHHcCCCEEEEcChH
Confidence 467899999999999999999999999888888875
No 316
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=40.14 E-value=15 Score=35.72 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=43.4
Q ss_pred CCCcchHHHHHHHh----cCCcEEEEccchh--hhhhcCee--e-eccCCCeeEEEEcccccccchhHHHHHHHHHhhCC
Q psy4493 67 DFRPNQLAAINIAL----LKKDAIIIMPTGK--LLKKKKIC--L-MTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGC 137 (323)
Q Consensus 67 ~~~~~Q~~~i~~~~----~~~~~lv~~pTgs--~l~~~~i~--l-~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~ 137 (323)
.|+|+|.+++..+. .++++|++.++|. .+....+- + ........++|.+|..++. .|...+.... ..
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~--qW~~E~~~~~--p~ 311 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMP--AWLDTFEKWA--PD 311 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHH--HHHHHHHHHS--TT
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHH--HHHHHHHHHC--CC
Confidence 68899999998665 6789999999998 11111100 0 1112233466677877753 5666665532 24
Q ss_pred cceEEE
Q psy4493 138 LARIAI 143 (323)
Q Consensus 138 v~~vVv 143 (323)
+..++.
T Consensus 312 ~~v~~~ 317 (800)
T 3mwy_W 312 LNCICY 317 (800)
T ss_dssp CCEEEC
T ss_pred ceEEEE
Confidence 444443
No 317
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=40.08 E-value=28 Score=30.39 Aligned_cols=41 Identities=17% Similarity=0.085 Sum_probs=28.6
Q ss_pred cCCCeEEEcCCCCCchHHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 37 LKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 37 ~~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
.+.+.+++.|||+|||..+...+.. ....+..++++-|.++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~----------------~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR----------------EYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH----------------HHTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH----------------HHHCCCEEEEEeCCcC
Confidence 4667899999999999765554432 1224566777888777
No 318
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=39.76 E-value=24 Score=30.39 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=15.9
Q ss_pred CeEEEcCCCCCchHHHHHHHH
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLK 60 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~ 60 (323)
.+++..|+|.|||..+.....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578889999999976554443
No 319
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=39.66 E-value=21 Score=31.12 Aligned_cols=36 Identities=14% Similarity=-0.100 Sum_probs=30.8
Q ss_pred CCcEEEEeCChhHHHHHHHHHHhCCCe-EEeecCCCC
Q psy4493 239 NQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 274 (323)
Q Consensus 239 ~~~~iVF~~s~~~~~~l~~~L~~~~~~-v~~~h~~~~ 274 (323)
+.++++||.+-.++...+..|...|+. +..|.|++.
T Consensus 246 d~~ivvyC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~ 282 (373)
T 1okg_A 246 LSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWS 282 (373)
T ss_dssp CTTSEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCeeEeCChHH
Confidence 678999999988888889999999984 888888754
No 320
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=39.58 E-value=18 Score=28.12 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=16.6
Q ss_pred cCCCeEEEcCCCCCchHHHHHHH
Q psy4493 37 LKKDAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 37 ~~~~~~~~~~tg~gkt~~~~~~l 59 (323)
.++-+.++.|+|.|||.-+...+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~ 25 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLF 25 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 35678889999999997655444
No 321
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=39.54 E-value=17 Score=28.46 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=16.6
Q ss_pred CCCeEEEcCCCCCchHHHHHHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLK 60 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~ 60 (323)
++-++++.|+|.|||..+..++.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 44567788999999976555544
No 322
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=39.12 E-value=27 Score=29.90 Aligned_cols=35 Identities=26% Similarity=0.196 Sum_probs=22.8
Q ss_pred ChhHHHHHHHHhc-------CCCeEEEcCCCCCchHHHHHHH
Q psy4493 25 RPNQLAAINIALL-------KKDAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 25 ~~~Q~~~~~~~~~-------~~~~~~~~~tg~gkt~~~~~~l 59 (323)
|+.+.+.+...+. +..+++..|.|.|||.-+....
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~ 66 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVL 66 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 4455555554443 3468888999999996655444
No 323
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=38.57 E-value=30 Score=28.61 Aligned_cols=36 Identities=8% Similarity=0.006 Sum_probs=29.2
Q ss_pred CCCcEEEEeCChh-HHHHHHHHHHhCCC-eEEeecCCC
Q psy4493 238 RNQSGIIYTTSIK-ECEDLREELRNRGL-RVSAYHAKL 273 (323)
Q Consensus 238 ~~~~~iVF~~s~~-~~~~l~~~L~~~~~-~v~~~h~~~ 273 (323)
++.+++|||.+-. .+...+..|...|+ ++..+.|++
T Consensus 78 ~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~ 115 (285)
T 1uar_A 78 NDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGR 115 (285)
T ss_dssp TTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 5678999998866 67788999999998 488887764
No 324
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=38.39 E-value=20 Score=27.24 Aligned_cols=28 Identities=7% Similarity=-0.162 Sum_probs=18.8
Q ss_pred CCCeEEEcCCCCCchHHHHHHHHhcCCCC
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLKSKFNLT 66 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~~~~g~~ 66 (323)
.+.++++.|+|+|||.......+. +|+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~-l~~~ 32 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL-TKRI 32 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH-HCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH-hCCC
Confidence 445778889999999665544433 4543
No 325
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=38.33 E-value=2e+02 Score=27.93 Aligned_cols=16 Identities=6% Similarity=-0.012 Sum_probs=12.9
Q ss_pred CCeEEEcCCCCCchHH
Q psy4493 39 KDAIIIMPTDYPWSDR 54 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~ 54 (323)
+.+++..|.|.|||..
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4588899999999943
No 326
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=38.31 E-value=28 Score=30.43 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=12.7
Q ss_pred CcceEEEeccccccc
Q psy4493 137 CLARIAIDEVHCCSS 151 (323)
Q Consensus 137 ~v~~vVvDEah~~~~ 151 (323)
.-.++|+||||.+..
T Consensus 262 ~~~~i~iDEa~~~~~ 276 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVD 276 (392)
T ss_dssp TTCEEEETTGGGGCC
T ss_pred ccEEEEEecHHHHhC
Confidence 456899999999985
No 327
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=38.24 E-value=21 Score=26.50 Aligned_cols=24 Identities=8% Similarity=-0.076 Sum_probs=16.7
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCC
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLT 66 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~ 66 (323)
+++..|+|+|||...... ..+|+.
T Consensus 4 I~l~G~~GsGKsT~a~~L--~~~g~~ 27 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL--KERGAK 27 (179)
T ss_dssp EEEECCTTSCHHHHHHHH--HHTTCE
T ss_pred EEEECCCCCCHHHHHHHH--HHCCCc
Confidence 456789999999765554 336654
No 328
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=38.13 E-value=21 Score=31.03 Aligned_cols=23 Identities=9% Similarity=0.091 Sum_probs=17.4
Q ss_pred hcCCCeEEEcCCCCCchHHHHHH
Q psy4493 36 LLKKDAIIIMPTDYPWSDRVRSV 58 (323)
Q Consensus 36 ~~~~~~~~~~~tg~gkt~~~~~~ 58 (323)
..+..+.++.|||+|||.-+...
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l 195 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKAL 195 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHH
T ss_pred hcCCEEEEECCCCCCHHHHHHHH
Confidence 35777888999999999654443
No 329
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=38.11 E-value=23 Score=29.75 Aligned_cols=36 Identities=11% Similarity=-0.057 Sum_probs=29.5
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCC-eEEeecCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKL 273 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~v~~~h~~~ 273 (323)
++.++++||.+-.++...+..|...|+ ++..|-|++
T Consensus 253 ~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~ 289 (302)
T 3olh_A 253 LSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSW 289 (302)
T ss_dssp TTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHH
T ss_pred CCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcH
Confidence 567899999998888888888999998 577777664
No 330
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=37.97 E-value=29 Score=29.80 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=23.1
Q ss_pred ChhHHHHHHHHh-------cCCCeEEEcCCCCCchHHHHHHHH
Q psy4493 25 RPNQLAAINIAL-------LKKDAIIIMPTDYPWSDRVRSVLK 60 (323)
Q Consensus 25 ~~~Q~~~~~~~~-------~~~~~~~~~~tg~gkt~~~~~~l~ 60 (323)
|+.+.+.+..++ .+..+++..|+|.|||..+.....
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 445555554443 234588888999999976555443
No 331
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=36.78 E-value=31 Score=29.09 Aligned_cols=36 Identities=8% Similarity=0.058 Sum_probs=25.0
Q ss_pred ChhHHHHHHHHhcCCCeEEEcCCCCCchHHHHHHHHh
Q psy4493 25 RPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 25 ~~~Q~~~~~~~~~~~~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
|+.+.+.+.. +....+++..|.|.|||.-+......
T Consensus 18 R~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 18 REKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp CHHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHHHh
Confidence 5566666666 55555677889999999776655543
No 332
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=36.32 E-value=25 Score=27.34 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=18.0
Q ss_pred cCCCeEEEcCCCCCchHHHHHHHHh
Q psy4493 37 LKKDAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 37 ~~~~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
.++-++++.|.|+|||.....+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3556778889999999765554443
No 333
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=36.31 E-value=35 Score=28.70 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=26.1
Q ss_pred ChhHHHHHHHHhc-CCCeEEEcCCCCCchHHHHHHHHh
Q psy4493 25 RPNQLAAINIALL-KKDAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 25 ~~~Q~~~~~~~~~-~~~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
|+.+.+.+...+. ++.+++..|.|.|||.-+...+..
T Consensus 17 R~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 17 REEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHH
Confidence 5566666655553 566778889999999776666554
No 334
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=35.98 E-value=21 Score=32.13 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=31.1
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCe-EEeecCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKL 273 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~-v~~~h~~~ 273 (323)
++.+++|||.+-..+...+..|+..|+. +..+.|++
T Consensus 426 ~~~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~ 462 (474)
T 3tp9_A 426 RDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGY 462 (474)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChH
Confidence 5678999999999999999999999984 88887764
No 335
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=35.81 E-value=1e+02 Score=30.06 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=24.6
Q ss_pred CcceEEEecccccccc-C------C-CchHHHHhH-HHHHhhCCCCCEEEEeecCChh
Q psy4493 137 CLARIAIDEVHCCSSW-G------H-DFRPDYQYL-SILKTMFPDVPILGLTATATTK 185 (323)
Q Consensus 137 ~v~~vVvDEah~~~~~-~------~-~~r~~~~~l-~~l~~~~~~~~~i~lSAT~~~~ 185 (323)
.-..++|||+|.+... + + ..+....++ ..+-.......++.+-||-.++
T Consensus 570 ~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~ 627 (806)
T 3cf2_A 570 APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 627 (806)
T ss_dssp CSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSS
T ss_pred CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCch
Confidence 4568999999988631 1 0 111122222 2233333355788888885544
No 336
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=35.78 E-value=33 Score=31.54 Aligned_cols=38 Identities=11% Similarity=0.042 Sum_probs=32.8
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecC-CCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA-KLES 275 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~-~~~~ 275 (323)
++.+++|||.+-..+...+..|...|+++..+.| ++..
T Consensus 321 ~~~~ivv~c~~g~rs~~aa~~L~~~G~~v~~l~G~G~~~ 359 (539)
T 1yt8_A 321 RGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSEAD 359 (539)
T ss_dssp BTCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCGGG
T ss_pred CCCeEEEEeCCCCcHHHHHHHHHHcCCeEEEecCCChHH
Confidence 4688999999988888999999999999999998 7643
No 337
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=35.77 E-value=1.3e+02 Score=26.48 Aligned_cols=21 Identities=5% Similarity=-0.186 Sum_probs=14.9
Q ss_pred CCeEEEcCCCCCchHHHHHHH
Q psy4493 39 KDAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~l 59 (323)
.-..+..|.|.|||.-+...+
T Consensus 179 ei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHH
Confidence 346677799999997655443
No 338
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=35.65 E-value=1.4e+02 Score=22.41 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=42.4
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCCeEEeecCCCCCCc------ceeeecccccCCccEEEEccC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------SIAFGLGIDKPNVRFVIHHCL 298 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~~~------T~~~~~Gid~~~v~~Vi~~~~ 298 (323)
..+.+.|.|.+..++..+.+.|.+.|+.+..+.++-.... |--.+.|+.++ .|+.+++
T Consensus 60 g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~~~~~~v~v~t~~~~KGlEf~---~V~~~~~ 123 (174)
T 3dmn_A 60 ERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFD---AVIVWNA 123 (174)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-CCCSSEEEEEGGGCTTCCEE---EEEEETC
T ss_pred CCCcEEEEecCHHHHHHHHHHHHHcCCcceeecccccccCCCeEEEEccccCCcCCC---EEEEecC
Confidence 3567889999999999999999999988776665432222 77778888765 4555554
No 339
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=35.45 E-value=18 Score=29.84 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=16.4
Q ss_pred cCCCeEEEcCCCCCchHHHHHHH
Q psy4493 37 LKKDAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 37 ~~~~~~~~~~tg~gkt~~~~~~l 59 (323)
.+.-+.++.|+|+|||.-+...+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHH
Confidence 45557788899999996654443
No 340
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=34.81 E-value=43 Score=29.65 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=31.4
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCC-eEEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~v~~~h~~~~ 274 (323)
++.++++||.+-..+...+..|...|+ ++..|.|++.
T Consensus 357 ~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~~ 394 (423)
T 2wlr_A 357 PEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWY 394 (423)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHHH
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccHH
Confidence 567899999999999999999999998 5888887753
No 341
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=34.40 E-value=51 Score=31.04 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=38.5
Q ss_pred CCCcchHHHHHHHh---------cCCcEEEEccchh--hhhhcCee--e-ec----cCCCeeEEEEcccccccchhHHHH
Q psy4493 67 DFRPNQLAAINIAL---------LKKDAIIIMPTGK--LLKKKKIC--L-MT----ESSSLKLLYVSPEKLAKSKSFMTK 128 (323)
Q Consensus 67 ~~~~~Q~~~i~~~~---------~~~~~lv~~pTgs--~l~~~~i~--l-~~----~~~~~~vii~Tp~~l~~~~~~~~~ 128 (323)
.|+|+|.+++..+. .++..|+..++|. .+.....- + .. ......++|.+|..++. .|...
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~--qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVR--NWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHH--HHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHH--HHHHH
Confidence 57899999998874 3456899999999 11111100 0 00 01123577778877764 56666
Q ss_pred HHHH
Q psy4493 129 LQKM 132 (323)
Q Consensus 129 l~~~ 132 (323)
+...
T Consensus 133 ~~~~ 136 (644)
T 1z3i_X 133 VGKW 136 (644)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5553
No 342
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=34.23 E-value=26 Score=25.51 Aligned_cols=17 Identities=6% Similarity=0.094 Sum_probs=14.5
Q ss_pred hcCCCeEEEcCCCCCch
Q psy4493 36 LLKKDAIIIMPTDYPWS 52 (323)
Q Consensus 36 ~~~~~~~~~~~tg~gkt 52 (323)
....++++..|+|.|||
T Consensus 25 ~~~~~vll~G~~GtGKt 41 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFE 41 (143)
T ss_dssp TCSSCEEEEEETTCCHH
T ss_pred CCCCcEEEECCCCccHH
Confidence 34677999999999998
No 343
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=34.07 E-value=39 Score=28.76 Aligned_cols=42 Identities=17% Similarity=0.086 Sum_probs=23.3
Q ss_pred CcceEEEeccccccccCCCchHHHHhHHHHHhhCC--CCCEEEEeecCCh
Q psy4493 137 CLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP--DVPILGLTATATT 184 (323)
Q Consensus 137 ~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~--~~~~i~lSAT~~~ 184 (323)
..-++++||+|.+.+ . ..+..+-.+.. .. +.-+|+.++|+..
T Consensus 132 ~~~ii~lDE~d~l~~--q---~~L~~l~~~~~-~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 132 RKTLILIQNPENLLS--E---KILQYFEKWIS-SKNSKLSIICVGGHNVT 175 (318)
T ss_dssp CEEEEEEECCSSSCC--T---HHHHHHHHHHH-CSSCCEEEEEECCSSCC
T ss_pred CceEEEEecHHHhhc--c---hHHHHHHhccc-ccCCcEEEEEEecCccc
Confidence 455889999999972 1 12222222222 23 3356677888653
No 344
>2ixs_A SDAI restriction endonuclease; hydrolase, domain architecture; HET: EPE; 2.0A {Streptomyces diastaticus}
Probab=33.13 E-value=1.2e+02 Score=25.63 Aligned_cols=144 Identities=12% Similarity=0.082 Sum_probs=85.2
Q ss_pred CCCcHHHHHHHHHhcCCCCCCh----h------HHHHHHHHhcCCCeEEEcCC------CCCchHHHHHHHHhcCCCCCC
Q psy4493 5 YPWSDRVRSVLKSKFNLTDFRP----N------QLAAINIALLKKDAIIIMPT------DYPWSDRVRSVLKSKFNLTDF 68 (323)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~----~------Q~~~~~~~~~~~~~~~~~~t------g~gkt~~~~~~l~~~~g~~~~ 68 (323)
|.-+.+...+|+. ++-..|.. + -.+..........+.|..|. .-|++..+.+++-..|
T Consensus 116 Y~L~~e~~~Ll~~-~gt~~w~~~l~~~l~~~~tL~~~ya~~r~~~~ipV~lp~G~~~~LsPG~hs~L~KaIIEeF----- 189 (323)
T 2ixs_A 116 YCLSDEAAQAIRS-YGTDAFESALVDFLSKASDTVRARAEALRAAMISVDLADGDEFLLSPAGQNPLLKKMVEEF----- 189 (323)
T ss_dssp EEECHHHHHHHHH-TTSTTHHHHHHHHHTTSCHHHHHHHHHHHHTSEEEEEETTEEEEECSSTTHHHHHHHHHTH-----
T ss_pred cccCHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHhhccccceEEcCCCCEEEeCCCchHHHHHHHHHHH-----
Confidence 3346667777776 55544331 0 11111111223445565555 3567766666654422
Q ss_pred CcchHHHHHHHhcCCcEEEEccchh--------hhhh-cCeeeeccCCCeeEEEEcccccccchhHHHHHHHHHhhCCcc
Q psy4493 69 RPNQLAAINIALLKKDAIIIMPTGK--------LLKK-KKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLA 139 (323)
Q Consensus 69 ~~~Q~~~i~~~~~~~~~lv~~pTgs--------~l~~-~~i~l~~~~~~~~vii~Tp~~l~~~~~~~~~l~~~~~~~~v~ 139 (323)
.|..+.|..++.+.-||. .+++ +|+.+......+|||+.-+++ +
T Consensus 190 -------aPRF~pg~~vLyvgDtg~K~~~~d~ell~~~LGl~i~~h~kmPDvVL~d~~~--------------------~ 242 (323)
T 2ixs_A 190 -------MPRFAPGAKVLYIGDTRGKHTRFEKRIFEETLGLTFDPHGRMPDLVLHDKVR--------------------K 242 (323)
T ss_dssp -------HHHHSTTCEEEEEECSSSSCEEECHHHHHHTTCCCCCTTCCCCSEEEEETTT--------------------T
T ss_pred -------hhhhcCCceEEEEcCCCCeeeeccHHHHHHhcCCccccccCCCCEEEEeCCC--------------------C
Confidence 566778888999999998 7788 899987778888988776521 1
Q ss_pred eEEEeccccccccCCCchHHHHhHHHHHhhCC--CCCEEEEeecCChhH
Q psy4493 140 RIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP--DVPILGLTATATTKV 186 (323)
Q Consensus 140 ~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~--~~~~i~lSAT~~~~~ 186 (323)
++++=|+=. +.|.--. .+...|..++. ...+++.||-++...
T Consensus 243 wL~lIEaVt--S~GPV~~---~R~~eL~~l~~~~~~g~vfVTAF~dR~~ 286 (323)
T 2ixs_A 243 WLFLMEAVK--SKGPFDE---ERHRTLRELFATPVAGLVFVNCFENREA 286 (323)
T ss_dssp EEEEEEECC--TTCCCCH---HHHHHHHHHTCBTTBEEEEEEEESSHHH
T ss_pred eEEEEEEEc--CCCCCCH---HHHHHHHHHHHhCCCCeEEEEeCCCHHH
Confidence 455555542 2232111 33444555554 345899999998763
No 345
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=32.99 E-value=27 Score=27.02 Aligned_cols=28 Identities=4% Similarity=-0.086 Sum_probs=19.1
Q ss_pred cCCCeEEEcCCCCCchHHHHHHHHhcCCC
Q psy4493 37 LKKDAIIIMPTDYPWSDRVRSVLKSKFNL 65 (323)
Q Consensus 37 ~~~~~~~~~~tg~gkt~~~~~~l~~~~g~ 65 (323)
.++.++++.|+|+|||......... +|+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~-l~~ 51 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARK-LNV 51 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH-HTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH-cCC
Confidence 3566788889999999665444433 444
No 346
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=32.84 E-value=78 Score=21.31 Aligned_cols=32 Identities=13% Similarity=0.278 Sum_probs=24.1
Q ss_pred CCCcEEEEe------CChhHHHHHHHHHHhCCCeEEee
Q psy4493 238 RNQSGIIYT------TSIKECEDLREELRNRGLRVSAY 269 (323)
Q Consensus 238 ~~~~~iVF~------~s~~~~~~l~~~L~~~~~~v~~~ 269 (323)
...+++||. +.+..|..+...|.+.++....+
T Consensus 15 ~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~v 52 (105)
T 2yan_A 15 NKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETF 52 (105)
T ss_dssp TSSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEE
T ss_pred ccCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEE
Confidence 346799998 46788999999999887654433
No 347
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=32.63 E-value=29 Score=26.52 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=15.1
Q ss_pred CCeEEEcCCCCCchHHHHHHH
Q psy4493 39 KDAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~l 59 (323)
+-+.++.|.|.|||.-+...+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~ 22 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 446788899999997544433
No 348
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=32.06 E-value=33 Score=31.43 Aligned_cols=24 Identities=17% Similarity=0.030 Sum_probs=19.2
Q ss_pred CCCeEEEcCCCCCchHHHHHHHHh
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
+.++++..+||+|||..+...+..
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~s 190 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILS 190 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999887666543
No 349
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=31.82 E-value=29 Score=25.73 Aligned_cols=24 Identities=17% Similarity=0.032 Sum_probs=15.9
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCC
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNL 65 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~ 65 (323)
+++..+.|+|||.......+. +|+
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~-l~~ 27 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKE-LKY 27 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHH-HCC
T ss_pred EEEECCCCCCHHHHHHHHHHH-hCC
Confidence 567889999999655444333 443
No 350
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=31.49 E-value=35 Score=26.62 Aligned_cols=25 Identities=0% Similarity=0.105 Sum_probs=17.8
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCC
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLT 66 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~ 66 (323)
+++..|.|+|||.......+. +|+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~-~~~~ 27 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEK-YGIP 27 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHH-SSCC
T ss_pred EEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 567889999999765554444 6654
No 351
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=31.12 E-value=66 Score=22.68 Aligned_cols=28 Identities=11% Similarity=0.148 Sum_probs=23.9
Q ss_pred CCCcEEEEeCC------hhHHHHHHHHHHhCCCe
Q psy4493 238 RNQSGIIYTTS------IKECEDLREELRNRGLR 265 (323)
Q Consensus 238 ~~~~~iVF~~s------~~~~~~l~~~L~~~~~~ 265 (323)
...+++||..+ +..|..+.+.|.+.|+.
T Consensus 14 ~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~ 47 (121)
T 3gx8_A 14 ESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVD 47 (121)
T ss_dssp HSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBC
T ss_pred ccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCC
Confidence 45799999884 88999999999998875
No 352
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=30.95 E-value=31 Score=29.48 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=15.9
Q ss_pred CeEEEcCCCCCchHHHHHHHHh
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
-++++.|||+|||.......+.
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3667889999999765555444
No 353
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=30.88 E-value=25 Score=30.02 Aligned_cols=19 Identities=16% Similarity=0.041 Sum_probs=15.7
Q ss_pred hcCCCeEEEcCCCCCchHH
Q psy4493 36 LLKKDAIIIMPTDYPWSDR 54 (323)
Q Consensus 36 ~~~~~~~~~~~tg~gkt~~ 54 (323)
..+..+.++.|||+|||.-
T Consensus 169 ~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577788899999999964
No 354
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=30.82 E-value=46 Score=28.53 Aligned_cols=22 Identities=5% Similarity=-0.088 Sum_probs=16.1
Q ss_pred CCeEEEcCCCCCchHHHHHHHH
Q psy4493 39 KDAIIIMPTDYPWSDRVRSVLK 60 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~l~ 60 (323)
+.+++..|+|.|||..+.....
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3478888999999976544443
No 355
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=30.52 E-value=35 Score=25.68 Aligned_cols=21 Identities=0% Similarity=-0.077 Sum_probs=15.8
Q ss_pred CCCeEEEcCCCCCchHHHHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSV 58 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~ 58 (323)
++.+++..+.|+|||......
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l 31 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKEL 31 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHH
Confidence 456888899999999654443
No 356
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=30.36 E-value=33 Score=27.07 Aligned_cols=22 Identities=9% Similarity=0.037 Sum_probs=16.7
Q ss_pred cCCCeEEEcCCCCCchHHHHHH
Q psy4493 37 LKKDAIIIMPTDYPWSDRVRSV 58 (323)
Q Consensus 37 ~~~~~~~~~~tg~gkt~~~~~~ 58 (323)
.++-+.++.|+|.|||.-+...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L 43 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKL 43 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4677888999999999654433
No 357
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=30.22 E-value=56 Score=27.68 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=15.8
Q ss_pred CeEEEcCCCCCchHHHHHHHH
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLK 60 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~ 60 (323)
++++..|.|.|||..+.....
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478889999999976554444
No 358
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=30.19 E-value=68 Score=30.38 Aligned_cols=40 Identities=18% Similarity=0.076 Sum_probs=26.1
Q ss_pred CCCChhHHHHHHHHh----cCC-CeEEEcCCCCCchHHHHHHHHh
Q psy4493 22 TDFRPNQLAAINIAL----LKK-DAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 22 ~~~~~~Q~~~~~~~~----~~~-~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
-.++..|.++++... .+. ...+...||+||+-.+...+.+
T Consensus 11 ~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~ 55 (661)
T 2d7d_A 11 YQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKE 55 (661)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHH
Confidence 355667877776543 232 3567889999999666555543
No 359
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=30.12 E-value=34 Score=27.08 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=18.5
Q ss_pred CCeEEEcCCCCCchHHHHHHHHhcCCCC
Q psy4493 39 KDAIIIMPTDYPWSDRVRSVLKSKFNLT 66 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~l~~~~g~~ 66 (323)
.-+++..++|+|||.......+. +|+.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~-l~~~ 34 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTH-FELK 34 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH-SSSE
T ss_pred cEEEEECCCCCCHHHHHHHHHHH-cCCe
Confidence 44677889999999765554444 5543
No 360
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=30.07 E-value=33 Score=29.57 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=15.2
Q ss_pred eEEEcCCCCCchHHHHHHHHh
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~ 61 (323)
+++..|||+|||.........
T Consensus 10 I~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 10 IVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCcCcHHHHHHHHHHH
Confidence 567779999999765554443
No 361
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=30.05 E-value=29 Score=27.88 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=21.1
Q ss_pred CCeEEEcCCCCCchHHHHHHHHhcCCCCCCC
Q psy4493 39 KDAIIIMPTDYPWSDRVRSVLKSKFNLTDFR 69 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~~ 69 (323)
.-+.++.|.|+|||..+....+. +|+..+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~-lg~~~~~ 57 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQN-FGLQHLS 57 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH-HCCCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHH-hCCeEec
Confidence 44677889999999766555544 6776554
No 362
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=29.83 E-value=31 Score=28.04 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=14.0
Q ss_pred eEEEcCCCCCchHHHHHHHH
Q psy4493 41 AIIIMPTDYPWSDRVRSVLK 60 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~ 60 (323)
+++..|+|+|||........
T Consensus 4 i~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 45677999999965444433
No 363
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=29.62 E-value=28 Score=30.84 Aligned_cols=21 Identities=14% Similarity=-0.023 Sum_probs=15.5
Q ss_pred eEEEcCCCCCchHHHHHHHHh
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~ 61 (323)
++++.|||+|||.........
T Consensus 5 i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHH
T ss_pred EEEECcchhhHHHHHHHHHHH
Confidence 456779999999766655544
No 364
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=29.45 E-value=52 Score=25.24 Aligned_cols=18 Identities=6% Similarity=-0.213 Sum_probs=14.4
Q ss_pred CCeEEEcCCCCCchHHHH
Q psy4493 39 KDAIIIMPTDYPWSDRVR 56 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~ 56 (323)
+.+++..|+|.|||..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 568888999999996433
No 365
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=29.40 E-value=28 Score=30.13 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=15.5
Q ss_pred CCCeEEEcCCCCCchHHHHHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l 59 (323)
+.-+.++.|||+|||.-+...+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3346678899999996654443
No 366
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=28.68 E-value=35 Score=26.63 Aligned_cols=25 Identities=0% Similarity=0.181 Sum_probs=17.4
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCC
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLT 66 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~ 66 (323)
+++..|.|+|||......... +|+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~-~~~~ 27 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEK-YEIP 27 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHH-HCCC
T ss_pred EEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 567889999999765554444 5544
No 367
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=28.61 E-value=1.5e+02 Score=21.11 Aligned_cols=45 Identities=7% Similarity=0.099 Sum_probs=29.5
Q ss_pred CcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHH
Q psy4493 137 CLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVML 188 (323)
Q Consensus 137 ~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~ 188 (323)
..+++|+|-- +.+. ..+..+..++...++.++|++|+....+...
T Consensus 83 ~~dliilD~~--l~~~-----~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~ 127 (157)
T 3hzh_A 83 NIDIVTLXIT--MPKM-----DGITCLSNIMEFDKNARVIMISALGKEQLVK 127 (157)
T ss_dssp GCCEEEECSS--CSSS-----CHHHHHHHHHHHCTTCCEEEEESCCCHHHHH
T ss_pred CCCEEEEecc--CCCc-----cHHHHHHHHHhhCCCCcEEEEeccCcHHHHH
Confidence 5789999832 2221 1233456677777899999999987765543
No 368
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=28.47 E-value=25 Score=30.64 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=16.4
Q ss_pred CCCeEEEcCCCCCchHHHHHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l 59 (323)
+.-+.++.|||+|||.-+...+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~ 157 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMI 157 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4457788899999997655544
No 369
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=28.37 E-value=61 Score=25.73 Aligned_cols=28 Identities=18% Similarity=-0.054 Sum_probs=18.3
Q ss_pred HHHHHHhcCC----CeEEEcCCCCCchHHHHH
Q psy4493 30 AAINIALLKK----DAIIIMPTDYPWSDRVRS 57 (323)
Q Consensus 30 ~~~~~~~~~~----~~~~~~~tg~gkt~~~~~ 57 (323)
..++.++.+. .+++..|.|.|||..+..
T Consensus 46 ~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 46 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHH
T ss_pred HHHHHHHhcCCcccEEEEECCCCCCHHHHHHH
Confidence 3455555442 377788999999965433
No 370
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=28.23 E-value=33 Score=28.95 Aligned_cols=22 Identities=0% Similarity=-0.324 Sum_probs=17.5
Q ss_pred HHHhcCCCeEEEcCCCCCchHH
Q psy4493 33 NIALLKKDAIIIMPTDYPWSDR 54 (323)
Q Consensus 33 ~~~~~~~~~~~~~~tg~gkt~~ 54 (323)
..+..++++++..|+|.|||..
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHH
Confidence 3445678899999999999954
No 371
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=27.96 E-value=33 Score=26.35 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=15.6
Q ss_pred cCCCeEEEcCCCCCchHHHHHH
Q psy4493 37 LKKDAIIIMPTDYPWSDRVRSV 58 (323)
Q Consensus 37 ~~~~~~~~~~tg~gkt~~~~~~ 58 (323)
.+.-+.++.|.|+|||.-+...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L 27 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRAL 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHH
Confidence 3455677889999999654433
No 372
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=27.42 E-value=43 Score=25.71 Aligned_cols=24 Identities=4% Similarity=0.163 Sum_probs=16.9
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCC
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNL 65 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~ 65 (323)
+++..+.|+|||.......+. +|+
T Consensus 18 I~l~G~~GsGKsT~~~~L~~~-~g~ 41 (203)
T 1ukz_A 18 IFVLGGPGAGKGTQCEKLVKD-YSF 41 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHHH-SSC
T ss_pred EEEECCCCCCHHHHHHHHHHH-cCc
Confidence 566779999999765555444 564
No 373
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=27.39 E-value=47 Score=23.70 Aligned_cols=74 Identities=11% Similarity=0.007 Sum_probs=47.8
Q ss_pred CcEEEEeCCh---hHHHHHHHHHHhCCCeEEeecCCCCCCc-ceeeecccccCCccEEEEccCCCCHhHHHHHhccCC
Q psy4493 240 QSGIIYTTSI---KECEDLREELRNRGLRVSAYHAKLESNV-SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFG 313 (323)
Q Consensus 240 ~~~iVF~~s~---~~~~~l~~~L~~~~~~v~~~h~~~~~~~-T~~~~~Gid~~~v~~Vi~~~~p~~~~~~~qr~GR~g 313 (323)
+++.|.=.|. +-...+.+.|.+.|+++...|.....-. -.+...=-|+|++|.|+.+-.|......+..+|+.|
T Consensus 5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~vDlavi~~p~~~v~~~v~e~~~~g 82 (122)
T 3ff4_A 5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEGVDTVTLYINPQNQLSEYNYILSLK 82 (122)
T ss_dssp CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTTCCEEEECSCHHHHGGGHHHHHHHC
T ss_pred CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCCCCEEEEEeCHHHHHHHHHHHHhcC
Confidence 3444443332 3467888999999999998887754333 111112225666888898888777777777777654
No 374
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=27.25 E-value=36 Score=30.90 Aligned_cols=16 Identities=6% Similarity=-0.099 Sum_probs=13.0
Q ss_pred CCcceEEEeccccccc
Q psy4493 136 GCLARIAIDEVHCCSS 151 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~ 151 (323)
..+++||+|||..+.+
T Consensus 413 ~~~rlvvlDEA~kmD~ 428 (483)
T 3euj_A 413 LPCRLLFLDQAARLDA 428 (483)
T ss_dssp CCCCEEEESSGGGSCH
T ss_pred CceeEEEEeccccCCH
Confidence 3789999999976654
No 375
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=27.16 E-value=67 Score=28.32 Aligned_cols=24 Identities=13% Similarity=-0.060 Sum_probs=17.0
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCC
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNL 65 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~ 65 (323)
++++.+.|+|||.......+. +|+
T Consensus 261 Iil~G~pGSGKSTla~~L~~~-~~~ 284 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVS-AGY 284 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGG-GTC
T ss_pred EEEECCCCCCHHHHHHHHHHh-cCc
Confidence 556779999999776665554 453
No 376
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=26.86 E-value=18 Score=17.96 Aligned_cols=8 Identities=25% Similarity=-0.035 Sum_probs=5.9
Q ss_pred hccCCCCC
Q psy4493 309 SIAFGLGK 316 (323)
Q Consensus 309 ~GR~gR~g 316 (323)
.||+||..
T Consensus 9 ~~RtGRRN 16 (26)
T 1cmk_I 9 SGRTGRRN 16 (26)
T ss_pred cCcccccc
Confidence 57888865
No 377
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=26.34 E-value=54 Score=28.53 Aligned_cols=37 Identities=11% Similarity=-0.006 Sum_probs=28.0
Q ss_pred CCCcEEEEe-CCh-hHHHHHHHHHHhCCCeEEeecCCCC
Q psy4493 238 RNQSGIIYT-TSI-KECEDLREELRNRGLRVSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~-~s~-~~~~~l~~~L~~~~~~v~~~h~~~~ 274 (323)
++.+++||| .+- ..+...+..|+..|++|..+.||+.
T Consensus 94 ~d~~VVvYc~~~G~rsa~ra~~~L~~~G~~V~~L~GG~~ 132 (373)
T 1okg_A 94 GELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQ 132 (373)
T ss_dssp SSSCEEEECSSTTTTTHHHHHHHHHHHTCCEEEETTTTH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCCHH
Confidence 568899999 443 3334778889888998888988874
No 378
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=26.26 E-value=41 Score=29.15 Aligned_cols=36 Identities=14% Similarity=0.036 Sum_probs=22.2
Q ss_pred ChhHHHHHHHHh-c----C-----CCeEE--EcCCCCCchHHHHHHHH
Q psy4493 25 RPNQLAAINIAL-L----K-----KDAII--IMPTDYPWSDRVRSVLK 60 (323)
Q Consensus 25 ~~~Q~~~~~~~~-~----~-----~~~~~--~~~tg~gkt~~~~~~l~ 60 (323)
|+.+.+.+...+ . + ..+++ ..|.|.|||.-+.....
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~ 74 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVK 74 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHH
Confidence 555666555544 1 2 23555 67999999976555543
No 379
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=26.19 E-value=37 Score=26.07 Aligned_cols=22 Identities=5% Similarity=-0.065 Sum_probs=15.8
Q ss_pred cCCCeEEEcCCCCCchHHHHHH
Q psy4493 37 LKKDAIIIMPTDYPWSDRVRSV 58 (323)
Q Consensus 37 ~~~~~~~~~~tg~gkt~~~~~~ 58 (323)
.+.-+.++.|.|+|||..+...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L 26 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRI 26 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3555677889999999655443
No 380
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=26.17 E-value=46 Score=30.58 Aligned_cols=37 Identities=8% Similarity=-0.126 Sum_probs=31.1
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCC-eEEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~v~~~h~~~~ 274 (323)
++.+++|||.+-..+...+..|+..|+ ++..+.|++.
T Consensus 429 ~~~~ivv~C~sG~rs~~aa~~L~~~G~~~v~~l~GG~~ 466 (539)
T 1yt8_A 429 TAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTS 466 (539)
T ss_dssp CCSEEEEECSSSHHHHHHHHHHHHHHCSCEEEETTHHH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEeCCcHH
Confidence 667899999999999999999999887 5778877643
No 381
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=26.01 E-value=42 Score=25.46 Aligned_cols=19 Identities=5% Similarity=-0.085 Sum_probs=14.5
Q ss_pred CCCeEEEcCCCCCchHHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRVR 56 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~ 56 (323)
+..++++.+.|+|||....
T Consensus 10 ~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4457788899999996543
No 382
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=25.70 E-value=40 Score=25.41 Aligned_cols=26 Identities=8% Similarity=0.187 Sum_probs=17.4
Q ss_pred CCeEEEcCCCCCchHHHHHHHHhcCCC
Q psy4493 39 KDAIIIMPTDYPWSDRVRSVLKSKFNL 65 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~l~~~~g~ 65 (323)
..+++..+.|+|||......... +|+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~-l~~ 30 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE-LGF 30 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH-HTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-hCC
Confidence 34667889999999765544433 454
No 383
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=25.27 E-value=41 Score=26.28 Aligned_cols=25 Identities=4% Similarity=0.159 Sum_probs=17.3
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCCC
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNLT 66 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~~ 66 (323)
+++..+.|+|||.......+. +|+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~-~g~~ 27 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEK-YGIP 27 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHH-HCCC
T ss_pred EEEECCCCCCHHHHHHHHHHH-hCCe
Confidence 567889999999765555443 4543
No 384
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=24.61 E-value=43 Score=25.34 Aligned_cols=25 Identities=8% Similarity=-0.021 Sum_probs=16.6
Q ss_pred CeEEEcCCCCCchHHHHHHHHhcCCC
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKSKFNL 65 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~~~g~ 65 (323)
-+++..+.|+|||......... +|+
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~-l~~ 31 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATG-LRL 31 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH-HTC
T ss_pred EEEEECCCCCCHHHHHHHHHHH-cCC
Confidence 3566779999999765544433 454
No 385
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=24.55 E-value=40 Score=24.82 Aligned_cols=17 Identities=18% Similarity=0.071 Sum_probs=12.8
Q ss_pred eEEEcCCCCCchHHHHH
Q psy4493 41 AIIIMPTDYPWSDRVRS 57 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~ 57 (323)
.+++.|+|+|||..+..
T Consensus 26 ~~I~G~NGsGKStil~A 42 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDA 42 (149)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 56778999999965443
No 386
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=24.51 E-value=43 Score=25.28 Aligned_cols=25 Identities=0% Similarity=0.065 Sum_probs=16.8
Q ss_pred CeEEEcCCCCCchHHHHHHHHhcCCC
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKSKFNL 65 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~~~g~ 65 (323)
-+++..+.|+|||.......+. +|+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~-~~~ 29 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEK-YGY 29 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH-HCC
T ss_pred EEEEECCCCCCHHHHHHHHHHH-hCC
Confidence 3567789999999765544433 454
No 387
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=24.44 E-value=48 Score=30.22 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=18.1
Q ss_pred HHHHHhcCCCeEEEcCCCCCchH
Q psy4493 31 AINIALLKKDAIIIMPTDYPWSD 53 (323)
Q Consensus 31 ~~~~~~~~~~~~~~~~tg~gkt~ 53 (323)
+......+.++++..|+|.|||.
T Consensus 34 l~~al~~~~~VLL~GpPGtGKT~ 56 (500)
T 3nbx_X 34 CLLAALSGESVFLLGPPGIAKSL 56 (500)
T ss_dssp HHHHHHHTCEEEEECCSSSSHHH
T ss_pred HHHHHhcCCeeEeecCchHHHHH
Confidence 33444568899999999999984
No 388
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=24.43 E-value=42 Score=26.63 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=16.6
Q ss_pred cCCCeEEEcCCCCCchHHHHHH
Q psy4493 37 LKKDAIIIMPTDYPWSDRVRSV 58 (323)
Q Consensus 37 ~~~~~~~~~~tg~gkt~~~~~~ 58 (323)
.|+-+.++.|.|.|||.-+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L 36 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQAL 36 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4666778889999999755443
No 389
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=24.42 E-value=67 Score=26.39 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=14.7
Q ss_pred CCCeEEEcCCCCCchHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRV 55 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~ 55 (323)
...+++..|+|.|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 567899999999999543
No 390
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=24.38 E-value=45 Score=24.81 Aligned_cols=19 Identities=16% Similarity=0.011 Sum_probs=13.8
Q ss_pred eEEEcCCCCCchHHHHHHH
Q psy4493 41 AIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l 59 (323)
+++..+.|+|||.......
T Consensus 5 I~i~G~~GsGKST~a~~L~ 23 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFI 23 (181)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHH
Confidence 5667799999996654443
No 391
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=24.31 E-value=48 Score=25.98 Aligned_cols=26 Identities=8% Similarity=0.054 Sum_probs=18.1
Q ss_pred CCeEEEcCCCCCchHHHHHHHHhcCCC
Q psy4493 39 KDAIIIMPTDYPWSDRVRSVLKSKFNL 65 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~l~~~~g~ 65 (323)
..+++..|.|+|||.......+. +|+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~-l~~ 31 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK-YQL 31 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH-HCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-hCC
Confidence 44777889999999765554443 554
No 392
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=24.08 E-value=56 Score=24.32 Aligned_cols=22 Identities=18% Similarity=0.016 Sum_probs=15.2
Q ss_pred CCeEEEcCCCCCchHHHHHHHH
Q psy4493 39 KDAIIIMPTDYPWSDRVRSVLK 60 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~l~ 60 (323)
.-+++..+.|+|||........
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3467788999999965444433
No 393
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=24.07 E-value=47 Score=27.64 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=27.8
Q ss_pred CCCcEEEEeCC--hh-HHHHHHHHHHhCCC-eEEeecCCC
Q psy4493 238 RNQSGIIYTTS--IK-ECEDLREELRNRGL-RVSAYHAKL 273 (323)
Q Consensus 238 ~~~~~iVF~~s--~~-~~~~l~~~L~~~~~-~v~~~h~~~ 273 (323)
++.+++|||.+ -. .+...+..|+..|+ +|..+.|++
T Consensus 91 ~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 130 (296)
T 1rhs_A 91 NDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGF 130 (296)
T ss_dssp TTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHH
T ss_pred CCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCH
Confidence 56789999987 33 46778888999998 577887764
No 394
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=24.00 E-value=38 Score=27.44 Aligned_cols=30 Identities=10% Similarity=0.017 Sum_probs=20.2
Q ss_pred CCCeEEEcCCCCCchHHHHHHHHhcCCCCCC
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLKSKFNLTDF 68 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~~~~g~~~~ 68 (323)
+.-+.++.|.|+|||.......+. +|+..+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~-Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAES-LNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH-TTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh-cCCCcC
Confidence 344667889999999665544443 676554
No 395
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=23.63 E-value=1.9e+02 Score=24.64 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=13.9
Q ss_pred CCCeEEEcCCCCCchHH
Q psy4493 38 KKDAIIIMPTDYPWSDR 54 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~ 54 (323)
...+++..|+|.|||..
T Consensus 72 ~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCCHHHH
Confidence 35688999999999944
No 396
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=23.43 E-value=45 Score=25.32 Aligned_cols=27 Identities=0% Similarity=0.076 Sum_probs=18.0
Q ss_pred CCCeEEEcCCCCCchHHHHHHHHhcCCC
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLKSKFNL 65 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~~~~g~ 65 (323)
+.-+++..+.|+|||......... +|+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~-l~~ 35 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK-YGY 35 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH-HCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH-hCC
Confidence 444667789999999765544433 554
No 397
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=23.40 E-value=46 Score=26.77 Aligned_cols=25 Identities=12% Similarity=-0.023 Sum_probs=17.2
Q ss_pred CeEEEcCCCCCchHHHHHHHHhcCCC
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKSKFNL 65 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~~~g~ 65 (323)
.+++..|.|+|||.......+. +|+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~-~g~ 55 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKS-HCY 55 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH-HCC
T ss_pred EEEEECCCCCCHHHHHHHHHHH-hCC
Confidence 3677889999999765555444 443
No 398
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=23.36 E-value=81 Score=29.47 Aligned_cols=41 Identities=22% Similarity=0.202 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCCCCCCcchHHHHHHHhcCCcEEEEccchh
Q psy4493 53 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGK 93 (323)
Q Consensus 53 ~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTgs 93 (323)
..+...+...|.-..-.+.|.+|++.++.++.+++..|+|+
T Consensus 135 ~~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGT 175 (608)
T 1w36_D 135 ALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGT 175 (608)
T ss_dssp HHHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTS
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 34556666655433336899999999999999999999999
No 399
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=23.24 E-value=50 Score=25.35 Aligned_cols=26 Identities=4% Similarity=0.162 Sum_probs=17.1
Q ss_pred CeEEEcCCCCCchHHHHHHHHhcCCCC
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKSKFNLT 66 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~~~g~~ 66 (323)
-+++..+.|+|||.......+. +|+.
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~-l~~~ 47 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEK-LGIP 47 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH-HTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHH-hCCc
Confidence 3667789999999765444433 5543
No 400
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=23.19 E-value=17 Score=32.75 Aligned_cols=37 Identities=11% Similarity=0.033 Sum_probs=0.0
Q ss_pred CCCcEEEEeCChhHHHHHHHHHHhCCC-eEEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~v~~~h~~~~ 274 (323)
++.+++|||.+-..+...+..|+..|+ ++..+-|++.
T Consensus 424 ~~~~iv~~C~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 461 (466)
T 3r2u_A 424 KNDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEGYK 461 (466)
T ss_dssp --------------------------------------
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCEEEecChHH
Confidence 567899999999889999999999998 6778878765
No 401
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=23.12 E-value=1.9e+02 Score=20.16 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCCcEEEEeC------ChhHHHHHHHHHHhCCCe-EEee
Q psy4493 228 ELADLMSRRFRNQSGIIYTT------SIKECEDLREELRNRGLR-VSAY 269 (323)
Q Consensus 228 ~l~~~l~~~~~~~~~iVF~~------s~~~~~~l~~~L~~~~~~-v~~~ 269 (323)
.+.+++.. .+++||.. .+..|..+.+.|.+.|+. ...+
T Consensus 12 ~v~~~i~~----~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~v 56 (118)
T 2wem_A 12 QLDALVKK----DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAY 56 (118)
T ss_dssp HHHHHHHH----SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHhcc----CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEE
Confidence 44445543 79999988 589999999999998874 4443
No 402
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Probab=23.11 E-value=52 Score=24.38 Aligned_cols=36 Identities=8% Similarity=0.090 Sum_probs=25.2
Q ss_pred CCcE--EEEeC-ChhHHHHHHHHHHhC----------CC-eEEeecCCCC
Q psy4493 239 NQSG--IIYTT-SIKECEDLREELRNR----------GL-RVSAYHAKLE 274 (323)
Q Consensus 239 ~~~~--iVF~~-s~~~~~~l~~~L~~~----------~~-~v~~~h~~~~ 274 (323)
+.++ ++||. +-..+...+..|.+. |+ ++..+.||+.
T Consensus 87 ~~~ivvv~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~ 136 (161)
T 1c25_A 87 GKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYK 136 (161)
T ss_dssp TSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHH
T ss_pred CCCeEEEEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHH
Confidence 4554 45798 777788888888753 76 5777777754
No 403
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=23.10 E-value=1.3e+02 Score=20.83 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=16.7
Q ss_pred CCeEEEcCCCCCchHHHHHHHHh
Q psy4493 39 KDAIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~l~~ 61 (323)
+.++++.++|.|=|.-+...+++
T Consensus 22 kkIlvvC~sG~gTS~ll~~kl~~ 44 (113)
T 1tvm_A 22 RKIIVACGGAVATSTMAAEEIKE 44 (113)
T ss_dssp EEEEEESCSCSSHHHHHHHHHHH
T ss_pred cEEEEECCCCHHHHHHHHHHHHH
Confidence 34788889999988666666554
No 404
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=22.77 E-value=2.9e+02 Score=22.03 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCChhHHHHHHHHHHhCCCe
Q psy4493 226 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLR 265 (323)
Q Consensus 226 ~~~l~~~l~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~ 265 (323)
...+.+++.. ...+..|||.+-..+.-+.+.|++.|++
T Consensus 174 ~~~~~~~l~~--~~~~~ai~~~~d~~a~g~~~al~~~g~~ 211 (291)
T 3egc_A 174 RDGAIKVLTG--ADRPTALLTSSHRITEGAMQALNVLGLR 211 (291)
T ss_dssp HHHHHHHHTC---CCCSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhC--CCCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 3445555543 3467789999999999999999987764
No 405
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=22.55 E-value=2.4e+02 Score=20.85 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=29.7
Q ss_pred CCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHHH
Q psy4493 136 GCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVML 188 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~ 188 (323)
...+++++| .++-...| +..+..++...++.+++++|+....+...
T Consensus 50 ~~~dlvl~D-~~lp~~~g------~~~~~~l~~~~~~~~ii~lt~~~~~~~~~ 95 (184)
T 3rqi_A 50 EKFEFITVX-LHLGNDSG------LSLIAPLCDLQPDARILVLTGYASIATAV 95 (184)
T ss_dssp SCCSEEEEC-SEETTEES------HHHHHHHHHHCTTCEEEEEESSCCHHHHH
T ss_pred CCCCEEEEe-ccCCCccH------HHHHHHHHhcCCCCCEEEEeCCCCHHHHH
Confidence 468899998 22211122 23355677777889999999987765543
No 406
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=22.47 E-value=49 Score=26.09 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=16.1
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCC
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNL 65 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~ 65 (323)
+++..+.|+|||.......+. +|+
T Consensus 3 I~l~G~~GsGKsT~a~~La~~-lg~ 26 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDK-YSL 26 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHH-HTC
T ss_pred EEEECCCCCCHHHHHHHHHHH-hCC
Confidence 467789999999765544433 443
No 407
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=22.44 E-value=71 Score=23.59 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=13.8
Q ss_pred CCCeEEEcCCCCCchHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRV 55 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~ 55 (323)
+..+.+..|.|+|||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 345778889999999643
No 408
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=22.40 E-value=1.9e+02 Score=20.75 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhcCCCcEEEEeC------ChhHHHHHHHHHHhCCCeEEee
Q psy4493 225 CLDELADLMSRRFRNQSGIIYTT------SIKECEDLREELRNRGLRVSAY 269 (323)
Q Consensus 225 ~~~~l~~~l~~~~~~~~~iVF~~------s~~~~~~l~~~L~~~~~~v~~~ 269 (323)
....+.+.+.. .+++||+. .+..|..+...|.+.|+....+
T Consensus 24 ~~~~v~~~i~~----~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~v 70 (135)
T 2wci_A 24 TIEKIQRQIAE----NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYV 70 (135)
T ss_dssp HHHHHHHHHHH----CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEE
T ss_pred HHHHHHHHhcc----CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEE
Confidence 34445555543 68999977 6889999999999988764444
No 409
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=22.35 E-value=92 Score=25.85 Aligned_cols=17 Identities=6% Similarity=0.112 Sum_probs=14.2
Q ss_pred CCeEEEcCCCCCchHHH
Q psy4493 39 KDAIIIMPTDYPWSDRV 55 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~ 55 (323)
..+++..|+|.|||..+
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57899999999999543
No 410
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=22.35 E-value=53 Score=24.71 Aligned_cols=21 Identities=5% Similarity=-0.069 Sum_probs=14.7
Q ss_pred CCCeEEEcCCCCCchHHHHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSV 58 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~ 58 (323)
+.-+++..+.|+|||......
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L 23 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLA 23 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 344667889999999654443
No 411
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=22.26 E-value=50 Score=25.82 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=17.4
Q ss_pred CCeEEEcCCCCCchHHHHHHHHhcCCC
Q psy4493 39 KDAIIIMPTDYPWSDRVRSVLKSKFNL 65 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~l~~~~g~ 65 (323)
..+++..+.|+|||......... +|+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~-l~~ 30 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQER-FHA 30 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH-HCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHH-cCc
Confidence 34667889999999765544443 454
No 412
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=22.15 E-value=1.9e+02 Score=19.96 Aligned_cols=33 Identities=12% Similarity=0.407 Sum_probs=17.8
Q ss_pred EEEeCChhHHHHHHHHHHhCCCeEEeecCCCCC
Q psy4493 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKLES 275 (323)
Q Consensus 243 iVF~~s~~~~~~l~~~L~~~~~~v~~~h~~~~~ 275 (323)
+||.+..+-..++...+++.|.++..++++...
T Consensus 6 vvfssdpeilkeivreikrqgvrvvllysdqde 38 (162)
T 2l82_A 6 VVFSSDPEILKEIVREIKRQGVRVVLLYSDQDE 38 (162)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCEEEEEECCSCH
T ss_pred EEecCCHHHHHHHHHHHHhCCeEEEEEecCchH
Confidence 445555555555555555556655555555433
No 413
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=22.12 E-value=79 Score=25.46 Aligned_cols=18 Identities=22% Similarity=0.014 Sum_probs=14.7
Q ss_pred cCCCeEEEcCCCCCchHH
Q psy4493 37 LKKDAIIIMPTDYPWSDR 54 (323)
Q Consensus 37 ~~~~~~~~~~tg~gkt~~ 54 (323)
.+.++++..|+|.|||..
T Consensus 28 ~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELI 45 (265)
T ss_dssp SCSCEEEECCTTSCHHHH
T ss_pred CCCCEEEECCCCCcHHHH
Confidence 456788999999999943
No 414
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=21.95 E-value=57 Score=27.07 Aligned_cols=21 Identities=0% Similarity=-0.100 Sum_probs=15.4
Q ss_pred eEEEcCCCCCchHHHHHHHHh
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKS 61 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~ 61 (323)
+++..|.|+|||.........
T Consensus 36 ivl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 566779999999765555443
No 415
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=21.95 E-value=43 Score=26.51 Aligned_cols=23 Identities=9% Similarity=0.091 Sum_probs=12.2
Q ss_pred cCCCeEEEcCCCCCchHHHHHHH
Q psy4493 37 LKKDAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 37 ~~~~~~~~~~tg~gkt~~~~~~l 59 (323)
.+.-+.++.|+|.|||..+....
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 35556778899999996654433
No 416
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=21.94 E-value=46 Score=28.83 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=16.6
Q ss_pred CeEEEcCCCCCchHHHHHHHHhcCC
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKSKFN 64 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~~~g 64 (323)
-.+++.|+|.|||..+....-..+|
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al~g 49 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFALFG 49 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHS
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567889999999766444333343
No 417
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=21.92 E-value=1.7e+02 Score=18.94 Aligned_cols=44 Identities=7% Similarity=0.345 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCC--hhHHHHHHHHHHhCCCeEEeecC
Q psy4493 226 LDELADLMSRRFRNQSGIIYTTS--IKECEDLREELRNRGLRVSAYHA 271 (323)
Q Consensus 226 ~~~l~~~l~~~~~~~~~iVF~~s--~~~~~~l~~~L~~~~~~v~~~h~ 271 (323)
+..+.+.+++ ++.+.+||+|. ...+.+.....++.|++...+.+
T Consensus 40 irdiiksmkd--ngkplvvfvngasqndvnefqneakkegvsydvlks 85 (112)
T 2lnd_A 40 IRDIIKSMKD--NGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKS 85 (112)
T ss_dssp HHHHHHHHTT--CCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHh--cCCeEEEEecCcccccHHHHHHHHHhcCcchhhhcc
Confidence 3344444443 66777888765 34555666666666665544443
No 418
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=21.92 E-value=49 Score=24.90 Aligned_cols=24 Identities=4% Similarity=0.170 Sum_probs=16.0
Q ss_pred eEEEcCCCCCchHHHHHHHHhcCCC
Q psy4493 41 AIIIMPTDYPWSDRVRSVLKSKFNL 65 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l~~~~g~ 65 (323)
+++..+.|+|||......... +|+
T Consensus 9 I~l~G~~GsGKsT~~~~L~~~-l~~ 32 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVRD-FGW 32 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHH-HCC
T ss_pred EEEECCCCCCHHHHHHHHHHH-hCC
Confidence 566779999999765444333 453
No 419
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=21.81 E-value=68 Score=24.28 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=17.8
Q ss_pred CCCeEEEcCCCCCchHHHHHHHHhcCCC
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSVLKSKFNL 65 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~l~~~~g~ 65 (323)
+.-+++..+.|+|||.......+. +|+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~-l~~ 38 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK-YGF 38 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH-HTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH-hCC
Confidence 445667889999999765444433 454
No 420
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=21.56 E-value=94 Score=26.12 Aligned_cols=19 Identities=11% Similarity=0.046 Sum_probs=14.2
Q ss_pred eEEEcCCCCCchHHHHHHH
Q psy4493 41 AIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l 59 (323)
.+++.+.|+|||.-+...+
T Consensus 7 ~~i~G~~GaGKTTll~~l~ 25 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHIL 25 (318)
T ss_dssp EEEEESSSSSCHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHH
Confidence 4567799999997665554
No 421
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=21.55 E-value=57 Score=25.05 Aligned_cols=20 Identities=5% Similarity=-0.022 Sum_probs=14.7
Q ss_pred CeEEEcCCCCCchHHHHHHH
Q psy4493 40 DAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l 59 (323)
-+++..+.|+|||.....+.
T Consensus 20 ~I~l~G~~GsGKSTla~~L~ 39 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIA 39 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47778899999996544433
No 422
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=21.54 E-value=53 Score=25.46 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=15.7
Q ss_pred HhcCCCeEEEcCCCCCchHHHH
Q psy4493 35 ALLKKDAIIIMPTDYPWSDRVR 56 (323)
Q Consensus 35 ~~~~~~~~~~~~tg~gkt~~~~ 56 (323)
+..+.-+.++.|.|.|||.-+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVR 38 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHH
Confidence 3456667788999999996543
No 423
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=21.46 E-value=2.1e+02 Score=19.76 Aligned_cols=45 Identities=13% Similarity=0.190 Sum_probs=29.1
Q ss_pred CCcceEEEeccccccccCCCchHHHHhHHHHHhhCCCCCEEEEeecCChhHH
Q psy4493 136 GCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVM 187 (323)
Q Consensus 136 ~~v~~vVvDEah~~~~~~~~~r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~ 187 (323)
...+++|+|-- +.+. ..+..+..++...++.+++++|+.......
T Consensus 48 ~~~dlvi~d~~--l~~~-----~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~ 92 (143)
T 3jte_A 48 NSIDVVITDMK--MPKL-----SGMDILREIKKITPHMAVIILTGHGDLDNA 92 (143)
T ss_dssp TTCCEEEEESC--CSSS-----CHHHHHHHHHHHCTTCEEEEEECTTCHHHH
T ss_pred CCCCEEEEeCC--CCCC-----cHHHHHHHHHHhCCCCeEEEEECCCCHHHH
Confidence 47889999832 2221 122345567777788999999988776543
No 424
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=21.42 E-value=54 Score=27.55 Aligned_cols=17 Identities=12% Similarity=-0.160 Sum_probs=14.1
Q ss_pred CCCeEEEcCCCCCchHH
Q psy4493 38 KKDAIIIMPTDYPWSDR 54 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~ 54 (323)
++.+++..|+|.|||.-
T Consensus 152 ~~~lll~G~~GtGKT~L 168 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYL 168 (308)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46788999999999954
No 425
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=21.33 E-value=64 Score=24.08 Aligned_cols=26 Identities=8% Similarity=-0.106 Sum_probs=13.0
Q ss_pred CCeEEEcCCCCCchHHHHHHHHhcCCC
Q psy4493 39 KDAIIIMPTDYPWSDRVRSVLKSKFNL 65 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~l~~~~g~ 65 (323)
.-+++..+.|+|||.......+. +|+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~-l~~ 31 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER-LPG 31 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH-STT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh-cCC
Confidence 34667789999999765444333 454
No 426
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=21.32 E-value=55 Score=24.80 Aligned_cols=17 Identities=6% Similarity=-0.191 Sum_probs=12.6
Q ss_pred eEEEcCCCCCchHHHHH
Q psy4493 41 AIIIMPTDYPWSDRVRS 57 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~ 57 (323)
+++..+.|+|||.....
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45677999999965443
No 427
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=21.31 E-value=41 Score=25.50 Aligned_cols=20 Identities=5% Similarity=-0.280 Sum_probs=14.6
Q ss_pred cCCCeEEEcCCCCCchHHHH
Q psy4493 37 LKKDAIIIMPTDYPWSDRVR 56 (323)
Q Consensus 37 ~~~~~~~~~~tg~gkt~~~~ 56 (323)
.+.-+.++.|.|+|||..+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34556778899999996533
No 428
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=21.25 E-value=1.1e+02 Score=27.47 Aligned_cols=21 Identities=10% Similarity=0.128 Sum_probs=16.0
Q ss_pred CCCeEEEcCCCCCchHHHHHH
Q psy4493 38 KKDAIIIMPTDYPWSDRVRSV 58 (323)
Q Consensus 38 ~~~~~~~~~tg~gkt~~~~~~ 58 (323)
..++++..|+|.|||..+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~l 221 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGL 221 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHH
Confidence 456889999999999654433
No 429
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=21.17 E-value=50 Score=28.19 Aligned_cols=21 Identities=5% Similarity=-0.061 Sum_probs=15.3
Q ss_pred CCeEEEcCCCCCchHHHHHHH
Q psy4493 39 KDAIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~l 59 (323)
+.+++..|+|.|||..+....
T Consensus 71 ~~vLl~GppGtGKT~la~~la 91 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMA 91 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 358888899999996544333
No 430
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=21.08 E-value=55 Score=24.93 Aligned_cols=19 Identities=11% Similarity=-0.134 Sum_probs=13.7
Q ss_pred eEEEcCCCCCchHHHHHHH
Q psy4493 41 AIIIMPTDYPWSDRVRSVL 59 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~~l 59 (323)
+++..+.|+|||.......
T Consensus 3 I~i~G~~GsGKsT~~~~L~ 21 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEIS 21 (205)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHH
Confidence 4678899999996544443
No 431
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=20.91 E-value=1.3e+02 Score=26.11 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=23.3
Q ss_pred CeeEEEEcccc-----cccchhHHHHHHHHHhhCCcceEEEecccc
Q psy4493 108 SLKLLYVSPEK-----LAKSKSFMTKLQKMYKAGCLARIAIDEVHC 148 (323)
Q Consensus 108 ~~~vii~Tp~~-----l~~~~~~~~~l~~~~~~~~v~~vVvDEah~ 148 (323)
...++++.|-. +...+.+...+.......++ ++|+||+|.
T Consensus 199 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~-~li~DEv~~ 243 (427)
T 3fq8_A 199 EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDA-LLVFDEVIT 243 (427)
T ss_dssp TEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTC-EEEEECTTT
T ss_pred CEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEecccc
Confidence 56677777643 33233444455544333344 899999995
No 432
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=20.88 E-value=50 Score=15.68 Aligned_cols=19 Identities=21% Similarity=0.620 Sum_probs=14.2
Q ss_pred CCCCCcHHHHHHHHHhcCC
Q psy4493 3 PNYPWSDRVRSVLKSKFNL 21 (323)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~ 21 (323)
|+|.+..++.+.|++..|.
T Consensus 5 psydfadelakllrqa~g~ 23 (26)
T 1sn9_A 5 PSYDFADELAKLLRQAXGX 23 (26)
T ss_dssp TTBCHHHHHHHHHHHHTC-
T ss_pred CccchHHHHHHHHHHhhCc
Confidence 5677788888888887664
No 433
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=20.65 E-value=1e+02 Score=27.47 Aligned_cols=20 Identities=5% Similarity=0.097 Sum_probs=15.3
Q ss_pred CCeEEEcCCCCCchHHHHHH
Q psy4493 39 KDAIIIMPTDYPWSDRVRSV 58 (323)
Q Consensus 39 ~~~~~~~~tg~gkt~~~~~~ 58 (323)
+.+++..|+|.|||......
T Consensus 64 ~~iLl~GppGtGKT~la~al 83 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAI 83 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHH
Confidence 46888999999999654433
No 434
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=20.60 E-value=1.1e+02 Score=26.65 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=24.1
Q ss_pred CeeEEEEcccc-----cccchhHHHHHHHHHhhCCcceEEEecccc
Q psy4493 108 SLKLLYVSPEK-----LAKSKSFMTKLQKMYKAGCLARIAIDEVHC 148 (323)
Q Consensus 108 ~~~vii~Tp~~-----l~~~~~~~~~l~~~~~~~~v~~vVvDEah~ 148 (323)
...++++.|-. +...+.+...+... ...++ ++|+||+|.
T Consensus 199 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~-~lI~DEv~~ 242 (424)
T 2e7u_A 199 EIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGV-LLIADEVMT 242 (424)
T ss_dssp GEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTC-EEEEECTTT
T ss_pred CEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCC-EEEEecCcc
Confidence 45678887732 22234555555555 43344 899999996
No 435
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=20.52 E-value=1e+02 Score=26.72 Aligned_cols=40 Identities=23% Similarity=0.402 Sum_probs=22.3
Q ss_pred CeeEEEEccc-----ccccchhHHHHHHHHHhhCCcceEEEecccc
Q psy4493 108 SLKLLYVSPE-----KLAKSKSFMTKLQKMYKAGCLARIAIDEVHC 148 (323)
Q Consensus 108 ~~~vii~Tp~-----~l~~~~~~~~~l~~~~~~~~v~~vVvDEah~ 148 (323)
+..+++++|. ....+..+...+.......++ ++|+||+|.
T Consensus 199 ~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~-~li~De~~~ 243 (426)
T 1sff_A 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGI-MLIADEVQS 243 (426)
T ss_dssp GEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTC-EEEEECTTT
T ss_pred ceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCC-EEEEechhh
Confidence 4567888772 122233334444443222233 899999997
No 436
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=20.47 E-value=1e+02 Score=25.62 Aligned_cols=36 Identities=22% Similarity=0.168 Sum_probs=27.1
Q ss_pred CCCcEEEEeCCh---hHHHHHHHHHHhCCCe-EEeecCCC
Q psy4493 238 RNQSGIIYTTSI---KECEDLREELRNRGLR-VSAYHAKL 273 (323)
Q Consensus 238 ~~~~~iVF~~s~---~~~~~l~~~L~~~~~~-v~~~h~~~ 273 (323)
++.+++|||.+. ..+..++..|+..|+. |..+.||+
T Consensus 106 ~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~ 145 (302)
T 3olh_A 106 AATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGL 145 (302)
T ss_dssp SSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHH
T ss_pred CCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCH
Confidence 567899999642 3477888899999984 77777653
No 437
>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1
Probab=20.43 E-value=78 Score=23.05 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=23.8
Q ss_pred CCCcEEEEeCChhH-------H---HHHHHHHHhCCCeEEeecCCCC
Q psy4493 238 RNQSGIIYTTSIKE-------C---EDLREELRNRGLRVSAYHAKLE 274 (323)
Q Consensus 238 ~~~~~iVF~~s~~~-------~---~~l~~~L~~~~~~v~~~h~~~~ 274 (323)
++.+++|||.+-.. + ..+.+.+...|+.+..+.||+.
T Consensus 91 ~~~~iVvyc~~g~~~~~~~~aa~~~~~~l~~l~~~G~~v~~L~GG~~ 137 (154)
T 1hzm_A 91 GTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLEGGFS 137 (154)
T ss_dssp TSSCEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTCCCEECCCCHH
T ss_pred CCCeEEEEeCCCCccccccccchHHHHHHHHHHHCCCceEEEcChHH
Confidence 55789999976432 1 3344445456888778888764
No 438
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=20.39 E-value=60 Score=23.96 Aligned_cols=19 Identities=5% Similarity=0.031 Sum_probs=13.9
Q ss_pred CeEEEcCCCCCchHHHHHH
Q psy4493 40 DAIIIMPTDYPWSDRVRSV 58 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~ 58 (323)
-+++..+.|+|||......
T Consensus 4 ~I~l~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGREL 22 (173)
T ss_dssp CEEEESCTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4677889999999654433
No 439
>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A
Probab=20.35 E-value=78 Score=24.82 Aligned_cols=38 Identities=8% Similarity=-0.003 Sum_probs=27.2
Q ss_pred CCCcE--EEEeC-ChhHHHHHHHHHHh----------CCC-eEEeecCCCCC
Q psy4493 238 RNQSG--IIYTT-SIKECEDLREELRN----------RGL-RVSAYHAKLES 275 (323)
Q Consensus 238 ~~~~~--iVF~~-s~~~~~~l~~~L~~----------~~~-~v~~~h~~~~~ 275 (323)
++.++ ++||. +-..+...+..|.+ .|+ ++..+.||+..
T Consensus 108 ~d~~ivvVvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~ 159 (211)
T 1qb0_A 108 LDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKE 159 (211)
T ss_dssp TTSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHH
T ss_pred CCCCeEEEEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHHHH
Confidence 34566 67898 77777777788775 477 68888888653
No 440
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=20.28 E-value=58 Score=24.50 Aligned_cols=17 Identities=12% Similarity=-0.068 Sum_probs=12.6
Q ss_pred eEEEcCCCCCchHHHHH
Q psy4493 41 AIIIMPTDYPWSDRVRS 57 (323)
Q Consensus 41 ~~~~~~tg~gkt~~~~~ 57 (323)
+++..+.|+|||.....
T Consensus 4 I~i~G~~GsGKsT~~~~ 20 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAK 20 (194)
T ss_dssp EEEEECTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 56777999999955433
No 441
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=20.20 E-value=76 Score=23.79 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=17.0
Q ss_pred CeEEEcCCCCCchHHHHHHHHhcCCCC
Q psy4493 40 DAIIIMPTDYPWSDRVRSVLKSKFNLT 66 (323)
Q Consensus 40 ~~~~~~~tg~gkt~~~~~~l~~~~g~~ 66 (323)
-+++..+.|+|||.......+. +|+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~-lg~~ 29 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA-LGVG 29 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH-HTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHH-cCCC
Confidence 3677889999999654443333 5543
Done!