Your job contains 1 sequence.
>psy4493
MLPNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLK
SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA
KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA
TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ
SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHCLSK
SMENFYQVSIAFGLGKHSFRSRY
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4493
(323 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
RGD|1311071 - symbol:Recql "RecQ protein-like (DNA helica... 593 2.9e-70 2
UNIPROTKB|Q6AYJ1 - symbol:Recql "ATP-dependent DNA helica... 593 2.9e-70 2
UNIPROTKB|F1NPI7 - symbol:RECQL "Uncharacterized protein"... 592 3.7e-70 2
UNIPROTKB|P46063 - symbol:RECQL "ATP-dependent DNA helica... 584 2.6e-69 2
UNIPROTKB|F1SR01 - symbol:RECQL "Uncharacterized protein"... 575 2.3e-68 2
MGI|MGI:103021 - symbol:Recql "RecQ protein-like" species... 574 2.9e-68 2
UNIPROTKB|A0JN36 - symbol:RECQL "Uncharacterized protein"... 571 6.0e-68 2
UNIPROTKB|F1PNP1 - symbol:RECQL "Uncharacterized protein"... 561 2.3e-66 2
ZFIN|ZDB-GENE-050809-134 - symbol:recql "RecQ protein-lik... 664 3.2e-65 1
WB|WBGene00019334 - symbol:K02F3.12 species:6239 "Caenorh... 543 8.7e-65 2
SGD|S000004802 - symbol:SGS1 "Nucleolar DNA helicase of t... 545 2.8e-51 1
ASPGD|ASPL0000045206 - symbol:musN species:162425 "Emeric... 452 5.6e-51 2
CGD|CAL0004296 - symbol:SGS1 species:5476 "Candida albica... 538 9.9e-51 1
UNIPROTKB|Q5A5R4 - symbol:SGS1 "Putative uncharacterized ... 538 9.9e-51 1
TAIR|locus:2197555 - symbol:RECQL2 "RECQ helicase L2" spe... 518 9.5e-50 1
POMBASE|SPAC2G11.12 - symbol:rqh1 "RecQ type DNA helicase... 524 4.1e-49 1
TAIR|locus:2197394 - symbol:RECQ4A species:3702 "Arabidop... 513 4.7e-48 1
DICTYBASE|DDB_G0272384 - symbol:DDB_G0272384 "Bloom syndr... 404 2.8e-46 2
FB|FBgn0002906 - symbol:Blm "Bloom syndrome helicase orth... 483 1.2e-44 1
DICTYBASE|DDB_G0292130 - symbol:blm "Bloom syndrome prote... 479 2.3e-44 1
TAIR|locus:2074429 - symbol:RECQI1 "RECQ helicase l1" spe... 461 1.0e-43 1
UNIPROTKB|Q9DEY9 - symbol:blm "Bloom syndrome protein hom... 392 1.1e-43 2
TAIR|locus:2127998 - symbol:RecQl3 "AT4G35740" species:37... 460 3.5e-43 1
UNIPROTKB|F1ND40 - symbol:BLM "Bloom syndrome protein hom... 382 6.7e-43 2
UNIPROTKB|F1P3V1 - symbol:BLM "Bloom syndrome protein hom... 382 1.3e-42 2
UNIPROTKB|Q9I920 - symbol:BLM "Bloom syndrome protein hom... 382 2.2e-42 2
UNIPROTKB|I3LFW3 - symbol:RECQL5 "Uncharacterized protein... 318 2.4e-37 2
UNIPROTKB|E1BQ04 - symbol:BLM "Uncharacterized protein" s... 414 2.5e-37 1
ZFIN|ZDB-GENE-070702-5 - symbol:blm "Bloom syndrome" spec... 410 6.8e-37 1
UNIPROTKB|J3KTQ2 - symbol:RECQL5 "ATP-dependent DNA helic... 314 8.1e-37 2
UNIPROTKB|Q6P4G0 - symbol:RECQL5 "ATP-dependent DNA helic... 294 8.2e-37 3
UNIPROTKB|E1BKM5 - symbol:RECQL5 "Uncharacterized protein... 328 2.6e-36 2
RGD|1308810 - symbol:Blm "Bloom syndrome, RecQ helicase-l... 397 8.7e-36 1
UNIPROTKB|H0YNU5 - symbol:BLM "Bloom syndrome protein" sp... 387 1.1e-35 2
UNIPROTKB|F1PAG8 - symbol:RECQL5 "Uncharacterized protein... 322 1.2e-35 2
UNIPROTKB|P54132 - symbol:BLM "Bloom syndrome protein" sp... 387 1.5e-35 2
TIGR_CMR|GSU_0898 - symbol:GSU_0898 "ATP-dependent DNA he... 387 1.7e-35 1
UNIPROTKB|E2RS76 - symbol:BLM "Uncharacterized protein" s... 393 4.4e-35 1
UNIPROTKB|J9PB86 - symbol:BLM "Uncharacterized protein" s... 393 4.4e-35 1
UNIPROTKB|O94762 - symbol:RECQL5 "ATP-dependent DNA helic... 314 8.5e-35 2
UNIPROTKB|P15043 - symbol:recQ species:83333 "Escherichia... 380 1.1e-34 1
MGI|MGI:1328362 - symbol:Blm "Bloom syndrome, RecQ helica... 388 1.5e-34 1
TIGR_CMR|CBU_0472 - symbol:CBU_0472 "ATP-dependent DNA he... 376 2.9e-34 1
UNIPROTKB|Q9KVF0 - symbol:VC_0196 "ATP-dependent DNA heli... 375 4.5e-34 1
TIGR_CMR|VC_0196 - symbol:VC_0196 "ATP-dependent DNA heli... 375 4.5e-34 1
GENEDB_PFALCIPARUM|PF14_0278 - symbol:PF14_0278 "ATP-depe... 312 1.0e-32 2
UNIPROTKB|Q8ILG5 - symbol:PF14_0278 "ATP-dependent DNA he... 312 1.0e-32 2
WB|WBGene00001865 - symbol:him-6 species:6239 "Caenorhabd... 357 1.6e-31 1
DICTYBASE|DDB_G0268512 - symbol:wrn "Werner syndrome prot... 280 1.1e-30 2
TAIR|locus:2180255 - symbol:RECQSIM "RECQ helicase SIM" s... 251 2.8e-30 3
TIGR_CMR|SO_4241 - symbol:SO_4241 "ATP-dependent DNA heli... 338 5.0e-30 1
TIGR_CMR|BA_2818 - symbol:BA_2818 "ATP-dependent DNA heli... 337 1.1e-29 1
UNIPROTKB|F1NT69 - symbol:F1NT69 "Uncharacterized protein... 325 2.7e-29 1
FB|FBgn0027375 - symbol:RecQ5 "homolog of RecQ" species:7... 279 2.7e-29 2
RGD|1310823 - symbol:Recql5 "RecQ protein-like 5" species... 325 4.3e-28 1
UNIPROTKB|F1NWK5 - symbol:F1NWK5 "Uncharacterized protein... 325 4.7e-28 1
UNIPROTKB|F1RMJ3 - symbol:BLM "Uncharacterized protein" s... 311 2.9e-27 1
UNIPROTKB|O34748 - symbol:recQ "Probable ATP-dependent DN... 310 5.3e-27 1
ASPGD|ASPL0000072255 - symbol:recQ species:162425 "Emeric... 247 9.2e-27 2
UNIPROTKB|Q8EEK1 - symbol:SO_2380 "ATP-dependent DNA heli... 290 1.1e-24 1
TIGR_CMR|SO_2380 - symbol:SO_2380 "RecQ domain protein" s... 290 1.1e-24 1
TIGR_CMR|BA_1505 - symbol:BA_1505 "ATP-dependent DNA heli... 286 1.3e-24 1
TIGR_CMR|SPO_0107 - symbol:SPO_0107 "ATP-dependent DNA he... 288 1.9e-24 1
UNIPROTKB|Q47WD5 - symbol:CPS_4237 "RecQ domain protein" ... 287 2.6e-24 1
TIGR_CMR|CPS_4237 - symbol:CPS_4237 "RecQ domain protein"... 287 2.6e-24 1
UNIPROTKB|F1PZR2 - symbol:WRN "Uncharacterized protein" s... 286 1.0e-23 1
UNIPROTKB|F1PZR3 - symbol:WRN "Uncharacterized protein" s... 285 1.5e-23 1
UNIPROTKB|F1PUF8 - symbol:WRN "Uncharacterized protein" s... 285 1.7e-23 1
UNIPROTKB|O93530 - symbol:wrn "Werner syndrome ATP-depend... 278 8.1e-23 1
WB|WBGene00004322 - symbol:rcq-5 species:6239 "Caenorhabd... 224 3.2e-22 2
ZFIN|ZDB-GENE-070702-2 - symbol:wrn "Werner syndrome" spe... 230 8.6e-22 2
WB|WBGene00006944 - symbol:wrn-1 species:6239 "Caenorhabd... 224 1.1e-21 2
UNIPROTKB|Q14191 - symbol:WRN "Werner syndrome ATP-depend... 264 2.5e-21 1
UNIPROTKB|E1BEE6 - symbol:WRN "Uncharacterized protein" s... 263 3.1e-21 1
UNIPROTKB|F1RX70 - symbol:WRN "Uncharacterized protein" s... 258 1.1e-20 1
UNIPROTKB|I3LC91 - symbol:WRN "Uncharacterized protein" s... 258 1.2e-20 1
UNIPROTKB|F1NAR0 - symbol:F1NAR0 "Uncharacterized protein... 257 1.3e-20 1
MGI|MGI:109635 - symbol:Wrn "Werner syndrome homolog (hum... 254 2.8e-20 1
UNIPROTKB|J3KSL7 - symbol:RECQL5 "ATP-dependent DNA helic... 238 4.4e-20 1
RGD|1564788 - symbol:Wrn "Werner syndrome, RecQ helicase-... 239 1.2e-18 1
TAIR|locus:2029799 - symbol:AT1G27880 species:3702 "Arabi... 185 1.7e-14 2
UNIPROTKB|F8WD97 - symbol:RECQL "ATP-dependent DNA helica... 184 5.1e-14 1
FB|FBgn0040290 - symbol:RecQ4 "RecQ4" species:7227 "Droso... 159 4.3e-12 2
UNIPROTKB|F1RSP7 - symbol:RECQL4 "Uncharacterized protein... 147 1.8e-10 2
UNIPROTKB|K7GSZ9 - symbol:RECQL4 "Uncharacterized protein... 147 1.8e-10 2
UNIPROTKB|F1RV44 - symbol:RECQL4 "Uncharacterized protein... 147 1.8e-10 2
UNIPROTKB|F8WA66 - symbol:RECQL "ATP-dependent DNA helica... 149 4.3e-10 1
MGI|MGI:1931028 - symbol:Recql4 "RecQ protein-like 4" spe... 139 1.5e-09 2
UNIPROTKB|Q4JNX8 - symbol:RTS "RECQL4-helicase-like prote... 132 1.1e-08 2
UNIPROTKB|Q33DM4 - symbol:recql4 "RecQ4 protein" species:... 132 1.1e-08 2
UNIPROTKB|A5D786 - symbol:RECQL4 "RECQL4 protein" species... 163 1.2e-08 1
UNIPROTKB|Q47ZX4 - symbol:CPS_2945 "Putative DEAD/DEAH bo... 115 7.3e-08 2
TIGR_CMR|CPS_2945 - symbol:CPS_2945 "putative DEAD/DEAH b... 115 7.3e-08 2
UNIPROTKB|E2RDN3 - symbol:E2RDN3 "Uncharacterized protein... 154 1.2e-07 1
UNIPROTKB|F5H2L2 - symbol:RECQL "ATP-dependent DNA helica... 123 3.2e-07 1
RGD|1307732 - symbol:Recql4 "RecQ protein-like 4" species... 148 5.7e-07 1
UNIPROTKB|H9KZS5 - symbol:H9KZS5 "Uncharacterized protein... 81 5.8e-07 3
UNIPROTKB|O94761 - symbol:RECQL4 "ATP-dependent DNA helic... 139 5.6e-06 1
UNIPROTKB|J3KRM6 - symbol:RECQL5 "ATP-dependent DNA helic... 96 0.00029 1
>RGD|1311071 [details] [associations]
symbol:Recql "RecQ protein-like (DNA helicase Q1-like)"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0015630 "microtubule cytoskeleton"
evidence=IEA;ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 RGD:1311071 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
Length = 621
Score = 593 (213.8 bits), Expect = 2.9e-70, Sum P(2) = 2.9e-70
Identities = 119/278 (42%), Positives = 177/278 (63%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++PWS +V+ VL+ F L FRP QL +N + +KD ++MPT S ++ ++
Sbjct: 72 DFPWSGKVKHVLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSD 131
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKI-CLMTE----SSSLKLLYVSP 116
F L L + +L++ I K+ + C+ TE +S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+AG L +A+DEVHCCS WGHDFRPDY+ L ILK FP++ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNISLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L +E C+ A FNRPNL+YEVR KP++ +D ++ +A+L++ R
Sbjct: 252 GLTATATNHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENIANLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 274
++ +SGIIY S K+ E + L+ G+R YHA +E
Sbjct: 312 YKGKSGIIYCFSQKDSEQVTISLQKLGVRAGTYHANME 349
Score = 137 (53.3 bits), Expect = 2.9e-70, Sum P(2) = 2.9e-70
Identities = 24/32 (75%), Positives = 30/32 (93%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
++AFG+GIDKP+VRFVIHH +SKSMEN+YQ S
Sbjct: 371 TVAFGMGIDKPDVRFVIHHSMSKSMENYYQES 402
>UNIPROTKB|Q6AYJ1 [details] [associations]
symbol:Recql "ATP-dependent DNA helicase Q1" species:10116
"Rattus norvegicus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 RGD:1311071
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
Length = 621
Score = 593 (213.8 bits), Expect = 2.9e-70, Sum P(2) = 2.9e-70
Identities = 119/278 (42%), Positives = 177/278 (63%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++PWS +V+ VL+ F L FRP QL +N + +KD ++MPT S ++ ++
Sbjct: 72 DFPWSGKVKHVLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSD 131
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKI-CLMTE----SSSLKLLYVSP 116
F L L + +L++ I K+ + C+ TE +S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+AG L +A+DEVHCCS WGHDFRPDY+ L ILK FP++ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNISLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L +E C+ A FNRPNL+YEVR KP++ +D ++ +A+L++ R
Sbjct: 252 GLTATATNHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENIANLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 274
++ +SGIIY S K+ E + L+ G+R YHA +E
Sbjct: 312 YKGKSGIIYCFSQKDSEQVTISLQKLGVRAGTYHANME 349
Score = 137 (53.3 bits), Expect = 2.9e-70, Sum P(2) = 2.9e-70
Identities = 24/32 (75%), Positives = 30/32 (93%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
++AFG+GIDKP+VRFVIHH +SKSMEN+YQ S
Sbjct: 371 TVAFGMGIDKPDVRFVIHHSMSKSMENYYQES 402
>UNIPROTKB|F1NPI7 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000733 "DNA strand renaturation"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0015630 "microtubule
cytoskeleton" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
GO:GO:0008026 OMA:ESSQTCH EMBL:AADN02006609 IPI:IPI00602593
Ensembl:ENSGALT00000021517 Uniprot:F1NPI7
Length = 661
Score = 592 (213.5 bits), Expect = 3.7e-70, Sum P(2) = 3.7e-70
Identities = 115/279 (41%), Positives = 175/279 (62%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++PW +++++ L++KF L FR QL +N + KD ++MPT S ++ +V
Sbjct: 72 DFPWYEKIKTALQNKFKLPKFRSLQLETVNATMAGKDIFLVMPTGGGKSLCYQLPAVCSD 131
Query: 62 KFNLT-----DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSP 116
F L +QL ++ + + + + +K ++ +S LKLLYV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLDQLGISATLLNASSSKEHVKWVHAQMLDRNSQLKLLYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM+KL+K Y+AGCLARIA+DEVHCCS WGHDFRPDY+ L ILK FP P++
Sbjct: 192 EKIAKSKMFMSKLEKAYQAGCLARIAVDEVHCCSQWGHDFRPDYKSLGILKRQFPCAPLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D Q +L I+ C+ A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATNHVLKDAQNILHIQKCITFTASFNRPNLYYEVRHKPSNNEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES 275
++ SGI+Y S K+ E + L+ G++ YHA +++
Sbjct: 312 YKGLSGIVYCFSQKDSEQVTVSLQKLGIKAGTYHANMDA 350
Score = 137 (53.3 bits), Expect = 3.7e-70, Sum P(2) = 3.7e-70
Identities = 24/32 (75%), Positives = 30/32 (93%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
++AFG+GIDKP+VRFVIHH +SKSMEN+YQ S
Sbjct: 371 TVAFGMGIDKPDVRFVIHHSMSKSMENYYQES 402
Score = 119 (46.9 bits), Expect = 5.0e-14, Sum P(2) = 5.0e-14
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG 92
TD+PW +++++ L++KF L FR QL +N + KD ++MPTG
Sbjct: 71 TDFPWYEKIKTALQNKFKLPKFRSLQLETVNATMAGKDIFLVMPTG 116
>UNIPROTKB|P46063 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000733 "DNA strand
renaturation" evidence=IDA] [GO:0003678 "DNA helicase activity"
evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA;TAS]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310 GO:GO:0004003
EMBL:CH471094 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733
EMBL:AC006559 KO:K10899 OMA:ESSQTCH HOGENOM:HOG000044388
EMBL:L36140 EMBL:D37984 EMBL:BT007119 EMBL:AK291627 EMBL:BC001052
IPI:IPI00178431 PIR:A58836 RefSeq:NP_002898.2 RefSeq:NP_116559.1
UniGene:Hs.235069 PDB:2V1X PDB:2WWY PDBsum:2V1X PDBsum:2WWY
ProteinModelPortal:P46063 SMR:P46063 DIP:DIP-29216N IntAct:P46063
STRING:P46063 PhosphoSite:P46063 DMDM:218512113 PaxDb:P46063
PRIDE:P46063 DNASU:5965 Ensembl:ENST00000421138
Ensembl:ENST00000444129 GeneID:5965 KEGG:hsa:5965 UCSC:uc001rex.3
CTD:5965 GeneCards:GC12M021621 H-InvDB:HIX0010478 HGNC:HGNC:9948
HPA:CAB009743 HPA:HPA030960 MIM:600537 neXtProt:NX_P46063
PharmGKB:PA34315 HOVERGEN:HBG057654 InParanoid:P46063
PhylomeDB:P46063 ChEMBL:CHEMBL1293236 ChiTaRS:RECQL
EvolutionaryTrace:P46063 GenomeRNAi:5965 NextBio:23220
ArrayExpress:P46063 Bgee:P46063 CleanEx:HS_RECQL
Genevestigator:P46063 GermOnline:ENSG00000004700 Uniprot:P46063
Length = 649
Score = 584 (210.6 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 119/278 (42%), Positives = 173/278 (62%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++PWS +V+ +L++ F L FRP QL IN+ + K+ ++MPT S ++ ++
Sbjct: 72 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD 131
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC-----LMTESSSLKLLYVSP 116
F L L + +LK+ I K+ + ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ D QK+L IE C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 274
++ QSGIIY S K+ E + L+N G+ AYHA LE
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLE 349
Score = 137 (53.3 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 24/32 (75%), Positives = 30/32 (93%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
++AFG+GIDKP+VRFVIHH +SKSMEN+YQ S
Sbjct: 371 TVAFGMGIDKPDVRFVIHHSMSKSMENYYQES 402
>UNIPROTKB|F1SR01 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA strand
renaturation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0015630 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
OMA:ESSQTCH EMBL:CU633485 EMBL:CU457490 Ensembl:ENSSSCT00000000624
Uniprot:F1SR01
Length = 649
Score = 575 (207.5 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
Identities = 118/278 (42%), Positives = 173/278 (62%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++PWS +V+ VL++ F L FRP QL IN+ + K+ ++MPT S ++ ++
Sbjct: 72 DFPWSGKVKEVLQNIFKLQKFRPLQLETINVTMSGKEVFLVMPTGGGKSLCYQLPALCSD 131
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC-----LMTESSSLKLLYVSP 116
F L L + +LK+ I K+ + ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSKLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIAIDEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAIDEVHCCSQWGHDFRPDYKALGILKRQFPNTSLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT+ V+ D QK+L +E C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATSHVLKDAQKILCVEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 274
++ QSGIIY S K+ E + L+ G+ AYHA +E
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTVSLQKLGIHAGAYHANME 349
Score = 137 (53.3 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
Identities = 24/32 (75%), Positives = 30/32 (93%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
++AFG+GIDKP+VRFVIHH +SKSMEN+YQ S
Sbjct: 371 TVAFGMGIDKPDVRFVIHHSMSKSMENYYQES 402
>MGI|MGI:103021 [details] [associations]
symbol:Recql "RecQ protein-like" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000733 "DNA
strand renaturation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISO] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
SMART:SM00490 MGI:MGI:103021 GO:GO:0005524 GO:GO:0005634
GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0000733 EMBL:CH466572 KO:K10899 OMA:ESSQTCH
HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 EMBL:AB017104
EMBL:AB017105 EMBL:AK137589 EMBL:AK164344 IPI:IPI00129401
IPI:IPI00230278 RefSeq:NP_001191836.1 RefSeq:NP_075529.2
UniGene:Mm.27407 ProteinModelPortal:Q9Z129 SMR:Q9Z129 STRING:Q9Z129
PhosphoSite:Q9Z129 PaxDb:Q9Z129 PRIDE:Q9Z129
Ensembl:ENSMUST00000032370 Ensembl:ENSMUST00000111803 GeneID:19691
KEGG:mmu:19691 InParanoid:Q3TPI5 OrthoDB:EOG4THVSK NextBio:297024
Bgee:Q9Z129 CleanEx:MM_RECQL Genevestigator:Q9Z129
GermOnline:ENSMUSG00000030243 Uniprot:Q9Z129
Length = 648
Score = 574 (207.1 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 117/278 (42%), Positives = 172/278 (61%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++PW +V+ VL++ F L FRP QL IN+ + +KD ++MPT S ++ ++
Sbjct: 72 DFPWFGKVKDVLQNVFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSD 131
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC-----LMTESSSLKLLYVSP 116
F L L + +LK+ I K+ + ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+AG L A+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEAGRLTGAAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLM 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT V+ DVQK+L + C+ A FNRPNLFYEVR KP++ +D +++ L++ R
Sbjct: 252 GLTATATNHVLKDVQKILCVGKCLTFTASFNRPNLFYEVRQKPSSAEDFTEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 274
++ QSGIIY S K+ E + L+ G+ YHA +E
Sbjct: 312 YKGQSGIIYCFSQKDSEQITISLQKLGIHAGTYHANME 349
Score = 137 (53.3 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 24/32 (75%), Positives = 30/32 (93%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
++AFG+GIDKP+VRFVIHH +SKSMEN+YQ S
Sbjct: 371 TVAFGMGIDKPDVRFVIHHSMSKSMENYYQES 402
>UNIPROTKB|A0JN36 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0000733 "DNA strand renaturation"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0000733 GO:GO:0008026 KO:K10899 OMA:ESSQTCH
HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 OrthoDB:EOG4THVSK
EMBL:DAAA02014122 EMBL:DAAA02014123 EMBL:BC126495 IPI:IPI00692480
RefSeq:NP_001071459.1 UniGene:Bt.13736 SMR:A0JN36 STRING:A0JN36
Ensembl:ENSBTAT00000028079 GeneID:533006 KEGG:bta:533006
InParanoid:A0JN36 NextBio:20875874 Uniprot:A0JN36
Length = 649
Score = 571 (206.1 bits), Expect = 6.0e-68, Sum P(2) = 6.0e-68
Identities = 117/278 (42%), Positives = 173/278 (62%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++PWS +V+ VL++ F L FRP QL IN+ + K+ ++MPT S ++ ++
Sbjct: 72 DFPWSGKVKDVLQNVFKLQKFRPLQLETINVTMSGKEVFLVMPTGGGKSLCYQLPALCSD 131
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC-----LMTESSSLKLLYVSP 116
F L L + +LK+ I K+ + ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSPKEHVKWVHAEMVNKNSKLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT+ V+ D QK+L +E C A FNRPNL+YEVR KP+ +D ++++ L++ R
Sbjct: 252 GLTATATSHVLKDAQKILCVEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 274
++ QSGIIY S K+ E + L+ G+ AYHA +E
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTISLQKLGIPAGAYHANME 349
Score = 137 (53.3 bits), Expect = 6.0e-68, Sum P(2) = 6.0e-68
Identities = 24/32 (75%), Positives = 30/32 (93%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
++AFG+GIDKP+VRFVIHH +SKSMEN+YQ S
Sbjct: 371 TVAFGMGIDKPDVRFVIHHSMSKSMENYYQES 402
Score = 41 (19.5 bits), Expect = 7.8e-58, Sum P(2) = 7.8e-58
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 249 IKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLG---IDKPNVRFVIHHCL 298
+K+ EDL E+L L + ++ K S + +A GL + + ++ +I H L
Sbjct: 500 LKQAEDLNEKLTPLKL-IDSWMGKGASKLRVA-GLAPPTLPREDLEKIIAHFL 550
Score = 39 (18.8 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 71 NQLAAINIA---LLKKDAIIIMPTGKLLKKKKICL 102
++L A++I LL++ +I L K+ K+CL
Sbjct: 16 SELHAVDIQIQELLERQQELIQKKNVLTKRIKLCL 50
>UNIPROTKB|F1PNP1 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 KO:K10899 OMA:ESSQTCH CTD:5965 EMBL:AAEX03015200
RefSeq:XP_543768.1 Ensembl:ENSCAFT00000019449 GeneID:486641
KEGG:cfa:486641 Uniprot:F1PNP1
Length = 646
Score = 561 (202.5 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 115/278 (41%), Positives = 172/278 (61%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++PWS +V+ VL++ F L FR QL IN+ + KD ++MPT S ++ ++
Sbjct: 72 DFPWSSKVKDVLQNIFKLQRFRLLQLETINVTMSGKDVFLVMPTGGGKSLCYQLPALCSD 131
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC-----LMTESSSLKLLYVSP 116
F L L + +LK+ I K+ + ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMINKNSKLKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK FM++L+K Y+A RIA+DEVHCCS WGHDFRPDY+ L ILK FP+ ++
Sbjct: 192 EKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSHWGHDFRPDYKALGILKRQFPNTALM 251
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT+ V+ D QK+L + C A FNRPNL+YE+R KP+ +D ++++ L++ R
Sbjct: 252 GLTATATSHVLKDAQKILCVGKCFTFTASFNRPNLYYEIRQKPSNTEDVIEDIVKLINGR 311
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 274
++ QSGIIY S K+ E + L+ G++ AYHA +E
Sbjct: 312 YKGQSGIIYCFSQKDSEQVTVSLQKLGIQAGAYHANME 349
Score = 132 (51.5 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 22/32 (68%), Positives = 30/32 (93%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
++AFG+GIDKP+VRF+IHH +SKS+EN+YQ S
Sbjct: 371 TVAFGMGIDKPDVRFIIHHSMSKSIENYYQES 402
>ZFIN|ZDB-GENE-050809-134 [details] [associations]
symbol:recql "RecQ protein-like (DNA helicase
Q1-like)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050809-134 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
EMBL:BX914215 IPI:IPI00933301 Ensembl:ENSDART00000101198
Uniprot:F1Q4T3
Length = 640
Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
Identities = 146/331 (44%), Positives = 206/331 (62%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++ WS V+ L + F L+ FRP Q AAIN+++ KD ++MPT S ++ ++
Sbjct: 78 DFSWSKEVQVNLCNIFQLSKFRPLQRAAINLSMSGKDLFLVMPTGRGKSLCYQLPALCSK 137
Query: 62 KFNLTDFRPNQLAAINIALLKK---DAIIIMPTGKLLKKKKICL-MTESSS-LKLLYVSP 116
F L L + L+ A+ + + K+I MT+ +S KLLYV+P
Sbjct: 138 GFTLVIAPLVSLMEDQLMYLQSVNVPAVTLNASSSKEDSKRILAGMTDKNSPFKLLYVTP 197
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKSK M+KL+K + G LARIA+DEVHCCS WGHDFRPDY+ L ILK FP+VP++
Sbjct: 198 EKIAKSKLLMSKLEKAFNMGLLARIAVDEVHCCSQWGHDFRPDYKLLGILKRQFPNVPLI 257
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
GLTATAT+ V+ D QK+L +++ V + APFNRPNL+YEVR K +DC D++A L+ R
Sbjct: 258 GLTATATSNVLKDCQKILCVQEPVTLTAPFNRPNLYYEVRFKD--NEDCTDQIASLIRGR 315
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VS 278
++NQSGI+Y S K+ E + EL+ R + YHA +E + +
Sbjct: 316 YKNQSGIVYVFSQKDAEVVATELQKRDIVAQPYHANMEPSHKSLVHQRWSSKKIQVVVAT 375
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
+AFG+GIDK +VRFVIHH +SKS+EN+YQ S
Sbjct: 376 VAFGMGIDKADVRFVIHHTISKSIENYYQES 406
>WB|WBGene00019334 [details] [associations]
symbol:K02F3.12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
EMBL:FO080195 HSSP:P15043 KO:K10899 OMA:ESSQTCH
RefSeq:NP_001022656.1 RefSeq:NP_001022657.1
ProteinModelPortal:Q9TXJ8 SMR:Q9TXJ8 EnsemblMetazoa:K02F3.12a
GeneID:175246 KEGG:cel:CELE_K02F3.12 UCSC:K02F3.12a CTD:175246
WormBase:K02F3.12a HOGENOM:HOG000044388 InParanoid:Q9TXJ8
NextBio:887386 Uniprot:Q9TXJ8
Length = 631
Score = 543 (196.2 bits), Expect = 8.7e-65, Sum P(2) = 8.7e-65
Identities = 116/280 (41%), Positives = 170/280 (60%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------Y--P--WSDR 54
+PWSD +LK +F+L FRP Q AAIN + K+DA++I+ T Y P ++
Sbjct: 91 FPWSDEATKILKEQFHLEKFRPLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPALLANG 150
Query: 55 VRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYV 114
+ V+ +L + + QL ++ I ++ + + K+ + + + S +LLYV
Sbjct: 151 LALVVSPLISLVEDQILQLRSLGI---DSSSLNANTSKEEAKRVEDAITNKDSKFRLLYV 207
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PEKLAKSK M KL+K G L IAIDEVHCCS WGHDFR DY +L++LK F VP
Sbjct: 208 TPEKLAKSKKMMNKLEKSLSVGFLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKGVP 267
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
ILGLTATAT+ V+ DV+ ML I+ + +A FNR NL Y+V KP ++ +C +E+A +
Sbjct: 268 ILGLTATATSNVLDDVKDMLGIQAALTFRAGFNRSNLKYKVVQKPGSEDECTEEIAKTIK 327
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 274
R F Q+GIIY S +CE + + L++ G++ YHA +E
Sbjct: 328 RDFAGQTGIIYCLSRNDCEKVAKALKSHGIKAKHYHAYME 367
Score = 135 (52.6 bits), Expect = 8.7e-65, Sum P(2) = 8.7e-65
Identities = 24/32 (75%), Positives = 29/32 (90%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
++AFG+GIDKPNVRFVIHH L KS+EN+YQ S
Sbjct: 389 TVAFGMGIDKPNVRFVIHHSLPKSIENYYQES 420
>SGD|S000004802 [details] [associations]
symbol:SGS1 "Nucleolar DNA helicase of the RecQ family"
species:4932 "Saccharomyces cerevisiae" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0000722 "telomere maintenance via
recombination" evidence=IGI;IMP] [GO:0031860 "telomeric 3' overhang
formation" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000706 "meiotic
DNA double-strand break processing" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0010520
"regulation of reciprocal meiotic recombination" evidence=IGI]
[GO:0031573 "intra-S DNA damage checkpoint" evidence=IGI;IMP]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI;IMP] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IGI] [GO:0000729 "DNA double-strand break processing"
evidence=IGI] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0031422 "RecQ helicase-Topo III complex" evidence=IDA;IPI]
[GO:0001302 "replicative cell aging" evidence=IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
molecule formation" evidence=IGI] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IDA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0051276 "chromosome organization"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 SGD:S000004802
GO:GO:0005524 GO:GO:0005730 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0001302 GO:GO:0003676 EMBL:BK006946 GO:GO:0000070
GO:GO:0004003 GO:GO:0000724 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000706
GO:GO:0000722 eggNOG:COG0514 GeneTree:ENSGT00550000074520 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0031573
EMBL:Z47815 GO:GO:0031292 GO:GO:0031860 GO:GO:0006268
OrthoDB:EOG4XSPZ5 GO:GO:0031422 EMBL:U22341 EMBL:L07870 PIR:S50918
RefSeq:NP_013915.1 PDB:1D8B PDBsum:1D8B ProteinModelPortal:P35187
SMR:P35187 DIP:DIP-2911N IntAct:P35187 MINT:MINT-442647
STRING:P35187 PeptideAtlas:P35187 EnsemblFungi:YMR190C
GeneID:855228 KEGG:sce:YMR190C CYGD:YMR190c HOGENOM:HOG000141897
OMA:TIFEICD EvolutionaryTrace:P35187 NextBio:978762
Genevestigator:P35187 GermOnline:YMR190C GO:GO:0010947
InterPro:IPR022758 Pfam:PF11408 Uniprot:P35187
Length = 1447
Score = 545 (196.9 bits), Expect = 2.8e-51, P = 2.8e-51
Identities = 127/349 (36%), Positives = 198/349 (56%)
Query: 3 PNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLK 60
P YPWSD V L F L FRPNQL A+N L KD ++MPT S ++ +V+K
Sbjct: 658 PTYPWSDEVLYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVK 717
Query: 61 S-KFNLTDFRPNQLAAI---NIA-LLKKD--AIIIMPTGKLLKKKKICLMTESSSLKLLY 113
S K + T + L ++ + LL K+ A + G ++++ + + L L+Y
Sbjct: 718 SGKTHGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLDLVY 777
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
+SPE ++ S+ + ++Y G LARI +DE HC S+WGHDFRPDY+ L K +PD+
Sbjct: 778 ISPEMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDI 837
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
P++ LTATA+ +V +D+ L++++ V +K FNR NL+YEV K K+ + E+ D +
Sbjct: 838 PMIALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKKT---KNTIFEICDAV 894
Query: 234 SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------- 276
RF+NQ+GIIY S K CE +++ G++ + YHA +E +
Sbjct: 895 KSRFKNQTGIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVI 954
Query: 277 -VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSFRSRY 323
++AFG+GIDKP+VRFV H + +++E +YQ + G G +S+ Y
Sbjct: 955 CATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITY 1003
>ASPGD|ASPL0000045206 [details] [associations]
symbol:musN species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
EMBL:BN001307 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 EMBL:AACD01000032
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
KO:K10901 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614 RefSeq:XP_659691.1
ProteinModelPortal:G5EB35 EnsemblFungi:CADANIAT00008758
GeneID:2875310 KEGG:ani:AN2087.2 HOGENOM:HOG000182791 OMA:EERQWIM
Uniprot:G5EB35
Length = 1534
Score = 452 (164.2 bits), Expect = 5.6e-51, Sum P(2) = 5.6e-51
Identities = 105/285 (36%), Positives = 162/285 (56%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
+PW+ V+ LK +F+L FRPNQL AI+ L KD ++MPT S ++ SV+ S
Sbjct: 682 HPWTKDVKIALKERFHLRGFRPNQLEAIDSTLSGKDTFVLMPTGGGKSLCYQLPSVISSG 741
Query: 63 FN--LTDFRPNQLAAIN--IALLKKDAI-IIMPTGKLLKKKKICLMTESSS------LKL 111
+T L+ + ++ L+++ I + G +++ +M+ SS ++L
Sbjct: 742 STRGVTLVISPLLSLMQDQVSHLRQNKIKAYLINGDTPSEERQWIMSTLSSHNPETHIEL 801
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LY++PE ++KS + +++K+ LAR+ IDE HC S WGHDFRPDY+ + + P
Sbjct: 802 LYITPEMISKSHALTDRIEKLCSIQKLARVVIDEAHCVSQWGHDFRPDYKQIGAFRARIP 861
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VP++ LTATAT V +DV L+++ C V FNRPNL YEVR K + LD +AD
Sbjct: 862 GVPLMALTATATENVKVDVIHNLRMQGCEVFTQSFNRPNLTYEVRRK-GKHAELLDSIAD 920
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELR-NRGLRVSAYHAKLES 275
+ +RN+ GI+Y S CE + E LR N ++ YHA L++
Sbjct: 921 TIKSTYRNKCGIVYCLSRNTCEKVAEALRTNYSIKAEHYHAGLDA 965
Score = 122 (48.0 bits), Expect = 5.6e-51, Sum P(2) = 5.6e-51
Identities = 21/30 (70%), Positives = 27/30 (90%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIHH + KS+E +YQ
Sbjct: 986 TIAFGMGIDKPDVRFVIHHSIPKSLEGYYQ 1015
>CGD|CAL0004296 [details] [associations]
symbol:SGS1 species:5476 "Candida albicans" [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0001302
"replicative cell aging" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0031422 "RecQ helicase-Topo III complex"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0044182
"filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0031860 "telomeric 3' overhang formation"
evidence=IEA] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
molecule formation" evidence=IEA] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IEA] [GO:0045132
"meiotic chromosome segregation" evidence=IEA] [GO:0030447
"filamentous growth" evidence=IMP] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
CGD:CAL0004296 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0003676
GO:GO:0006974 GO:GO:0005622 GO:GO:0006310 EMBL:AACQ01000059
EMBL:AACQ01000058 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0044182 RefSeq:XP_717059.1
RefSeq:XP_717138.1 ProteinModelPortal:Q5A5R4 STRING:Q5A5R4
GeneID:3641258 GeneID:3641294 KEGG:cal:CaO19.12795
KEGG:cal:CaO19.5335 Uniprot:Q5A5R4
Length = 1189
Score = 538 (194.4 bits), Expect = 9.9e-51, P = 9.9e-51
Identities = 133/334 (39%), Positives = 182/334 (54%)
Query: 6 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS-- 57
P+ D V S+L + F L FR NQL A++ L KD ++MPT Y V+S
Sbjct: 448 PFMDEVHSILNNVFKLKSFRANQLEAVSATLSNKDVFVLMPTGGGKSLCYQLPALVKSGA 507
Query: 58 ------VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
V+ +L + L A NI K + G K I L E L +
Sbjct: 508 TKGTTVVISPLISLMQDQVQHLLAKNI----KAGMFSSKGGNDDNKHTIHLFREGF-LDI 562
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
+Y+SPE+ KS + T + K+Y LAR+ IDE HC SSWGHDFRPDYQ L K FP
Sbjct: 563 VYLSPERANKSNAMQTIMTKLYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKDKFP 622
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VPI+ LTATA KV +D+ L+++D V++K FNR NLFYE+++K + +CL E+ D
Sbjct: 623 KVPIMALTATANEKVQMDILHNLKMKDPVLLKQSFNRTNLFYEIKLK---KSNCLLEIKD 679
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES----NV---------- 277
+ RF +SGIIY S + CE +L GL+ S YHA + + N+
Sbjct: 680 YILSRFSGKSGIIYCHSKQSCEHTSMKLNEYGLKTSFYHAGMSADKRFNIQKRWQENKIQ 739
Query: 278 ----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIH L +++E +YQ
Sbjct: 740 VICATIAFGMGIDKPDVRFVIHLYLPRTLEGYYQ 773
>UNIPROTKB|Q5A5R4 [details] [associations]
symbol:SGS1 "Putative uncharacterized protein SGS1"
species:237561 "Candida albicans SC5314" [GO:0001302 "replicative
cell aging" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0044182 "filamentous growth of a population of
unicellular organisms" evidence=IMP] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
CGD:CAL0004296 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0003676
GO:GO:0006974 GO:GO:0005622 GO:GO:0006310 EMBL:AACQ01000059
EMBL:AACQ01000058 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0044182 RefSeq:XP_717059.1
RefSeq:XP_717138.1 ProteinModelPortal:Q5A5R4 STRING:Q5A5R4
GeneID:3641258 GeneID:3641294 KEGG:cal:CaO19.12795
KEGG:cal:CaO19.5335 Uniprot:Q5A5R4
Length = 1189
Score = 538 (194.4 bits), Expect = 9.9e-51, P = 9.9e-51
Identities = 133/334 (39%), Positives = 182/334 (54%)
Query: 6 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRS-- 57
P+ D V S+L + F L FR NQL A++ L KD ++MPT Y V+S
Sbjct: 448 PFMDEVHSILNNVFKLKSFRANQLEAVSATLSNKDVFVLMPTGGGKSLCYQLPALVKSGA 507
Query: 58 ------VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
V+ +L + L A NI K + G K I L E L +
Sbjct: 508 TKGTTVVISPLISLMQDQVQHLLAKNI----KAGMFSSKGGNDDNKHTIHLFREGF-LDI 562
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
+Y+SPE+ KS + T + K+Y LAR+ IDE HC SSWGHDFRPDYQ L K FP
Sbjct: 563 VYLSPERANKSNAMQTIMTKLYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKDKFP 622
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELAD 231
VPI+ LTATA KV +D+ L+++D V++K FNR NLFYE+++K + +CL E+ D
Sbjct: 623 KVPIMALTATANEKVQMDILHNLKMKDPVLLKQSFNRTNLFYEIKLK---KSNCLLEIKD 679
Query: 232 LMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES----NV---------- 277
+ RF +SGIIY S + CE +L GL+ S YHA + + N+
Sbjct: 680 YILSRFSGKSGIIYCHSKQSCEHTSMKLNEYGLKTSFYHAGMSADKRFNIQKRWQENKIQ 739
Query: 278 ----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIH L +++E +YQ
Sbjct: 740 VICATIAFGMGIDKPDVRFVIHLYLPRTLEGYYQ 773
>TAIR|locus:2197555 [details] [associations]
symbol:RECQL2 "RECQ helicase L2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016592 "mediator complex" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IC] [GO:0006310 "DNA recombination" evidence=IC]
[GO:0009378 "four-way junction helicase activity" evidence=IDA]
[GO:0043138 "3'-5' DNA helicase activity" evidence=IDA] [GO:0000278
"mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0010413 "glucuronoxylan metabolic process"
evidence=RCA] [GO:0045492 "xylan biosynthetic process"
evidence=RCA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0006310 EMBL:AC007654 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009378 GO:GO:0016592 GO:GO:0043138
EMBL:AJ404471 IPI:IPI00518751 IPI:IPI00846160 RefSeq:NP_001077639.1
RefSeq:NP_174421.2 UniGene:At.40359 HSSP:P15043
ProteinModelPortal:Q9FT73 SMR:Q9FT73 IntAct:Q9FT73 STRING:Q9FT73
PaxDb:Q9FT73 PRIDE:Q9FT73 EnsemblPlants:AT1G31360.1 GeneID:840026
KEGG:ath:AT1G31360 TAIR:At1g31360 InParanoid:Q9FT73 KO:K10899
OMA:ESSQTCH PhylomeDB:Q9FT73 ProtClustDB:CLSN2680338
Genevestigator:Q9FT73 Uniprot:Q9FT73
Length = 705
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 116/282 (41%), Positives = 165/282 (58%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
+ W R V + F ++ +R NQ IN + +D ++IM S ++ ++L+
Sbjct: 71 FEWDSRADDVRFNVFGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLRGG 130
Query: 63 FNLTDFRPN----QLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSS--LKLLYVSP 116
L P Q + +A L A ++ T +K + E LK+LYV+P
Sbjct: 131 TTLV-VSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTP 189
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK++KSK FM+KL+K + AG L+ I+IDE HCCS WGHDFRPDY+ LSILKT FP VP++
Sbjct: 190 EKVSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPKVPMV 249
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATAT KV D+ +ML I CV + NRPNLFY VR K A K +DE+A+ +
Sbjct: 250 ALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRES 309
Query: 237 F-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV 277
+ N+SGI+Y S KECE + +LR RG+ YHA +++N+
Sbjct: 310 YSNNESGIVYCFSRKECEQIAGDLRERGISADYYHADMDANM 351
Score = 131 (51.2 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 37/90 (41%), Positives = 53/90 (58%)
Query: 221 AQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-SI 279
++K+C DL R R S Y + ++RE++ R + KL+ V ++
Sbjct: 322 SRKECEQIAGDL---RERGISADYYHADMDA--NMREKVHMRWSK-----NKLQVIVGTV 371
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
AFG+GI+KP+VRFVIHH LSKSME +YQ S
Sbjct: 372 AFGMGINKPDVRFVIHHSLSKSMETYYQES 401
>POMBASE|SPAC2G11.12 [details] [associations]
symbol:rqh1 "RecQ type DNA helicase Rqh1" species:4896
"Schizosaccharomyces pombe" [GO:0000723 "telomere maintenance"
evidence=IGI;IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IGI] [GO:0000725
"recombinational repair" evidence=IGI] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IC] [GO:0006268 "DNA unwinding
involved in replication" evidence=ISO] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0009650 "UV protection"
evidence=IMP] [GO:0031422 "RecQ helicase-Topo III complex"
evidence=IDA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IDA] [GO:0034065 "replication fork processing at rDNA
locus" evidence=IGI] [GO:0043007 "maintenance of rDNA"
evidence=IMP] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IMP] [GO:0071140 "resolution of mitotic
recombination intermediates" evidence=IMP] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 PomBase:SPAC2G11.12 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0043596 GO:GO:0000724 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0007131 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 GO:GO:0031573
GO:GO:0009650 GO:GO:0006268 EMBL:Y09426 PIR:S62467
RefSeq:NP_593092.1 ProteinModelPortal:Q09811 STRING:Q09811
EnsemblFungi:SPAC2G11.12.1 GeneID:2541620 KEGG:spo:SPAC2G11.12
OrthoDB:EOG4XSPZ5 NextBio:20802714 GO:GO:0031422 GO:GO:0034065
GO:GO:0071140 Uniprot:Q09811
Length = 1328
Score = 524 (189.5 bits), Expect = 4.1e-49, P = 4.1e-49
Identities = 136/334 (40%), Positives = 192/334 (57%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLK- 60
+YPWS V LK KF+L FR NQL AIN L KD I+MPT S ++ +V++
Sbjct: 500 SYPWSKEVLGCLKHKFHLKGFRKNQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEG 559
Query: 61 -SKFNLTDFRPNQLAAINIAL--LKKDAIIIMP-TGKLL--KKKKIC--LMTESSSLKLL 112
+ +T L+ + L L+K I +P +G+ +++++ LM ++ +KLL
Sbjct: 560 GASRGVTLVISPLLSLMQDQLDHLRKLNIPSLPLSGEQPADERRQVISFLMAKNVLVKLL 619
Query: 113 YVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPD 172
YV+PE LA + + L+ +Y+ LARI IDE HC S WGHDFRPDY+ L +L+ +
Sbjct: 620 YVTPEGLASNGAITRVLKSLYERKLLARIVIDEAHCVSHWGHDFRPDYKQLGLLRDRYQG 679
Query: 173 VPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADL 232
+P + LTATA V D+ L++E+C+ +K+ FNRPNLFYE IKP +KD EL
Sbjct: 680 IPFMALTATANEIVKKDIINTLRMENCLELKSSFNRPNLFYE--IKP--KKDLYTELYRF 735
Query: 233 MSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLES-------N-------- 276
+S ++SGIIY S CE + +LRN GL+ YHA LE N
Sbjct: 736 ISNGHLHESGIIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYK 795
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+G+DK +VRFVIHH KS+E +YQ
Sbjct: 796 IIVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQ 829
>TAIR|locus:2197394 [details] [associations]
symbol:RECQ4A species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0006310 "DNA
recombination" evidence=IEA;IMP] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IEA] [GO:0070417 "cellular
response to cold" evidence=IEP] [GO:0071215 "cellular response to
abscisic acid stimulus" evidence=IEP] [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IGI;RCA;IMP] [GO:0006974
"response to DNA damage stimulus" evidence=IGI;IMP] [GO:0043138
"3'-5' DNA helicase activity" evidence=IMP;IDA] [GO:0051276
"chromosome organization" evidence=IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
Prosite:PS00018 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0009506 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0000724 EMBL:U95973 GO:GO:0071215 GO:GO:0070417 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043138 HSSP:P15043 EMBL:AJ404473
EMBL:AY120761 EMBL:BT010133 IPI:IPI00538289 PIR:B86243
RefSeq:NP_172562.2 UniGene:At.10177 ProteinModelPortal:Q8L840
SMR:Q8L840 STRING:Q8L840 PaxDb:Q8L840 PRIDE:Q8L840
EnsemblPlants:AT1G10930.1 GeneID:837636 KEGG:ath:AT1G10930
TAIR:At1g10930 HOGENOM:HOG000148634 InParanoid:Q8L840 OMA:QLPALIC
PhylomeDB:Q8L840 ProtClustDB:PLN03137 Genevestigator:Q8L840
Uniprot:Q8L840
Length = 1188
Score = 513 (185.6 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 125/329 (37%), Positives = 179/329 (54%)
Query: 5 YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSK 62
+PW+ ++ K F FRPNQ IN + D ++MPT S ++ +++
Sbjct: 435 FPWTRKLEVNNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGG 494
Query: 63 FNLTDFRPN----QLAAINIALLKKDAIIIMPTGKLLKKKKIC--LMTESSSLKLLYVSP 116
L P Q +N+ A + + ++ KI L +E S KLLYV+P
Sbjct: 495 ITLV-ISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTP 553
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+AKS S + L+ + G LAR IDE HC S WGHDFRPDYQ L ILK FP++P+L
Sbjct: 554 EKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVL 613
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATAT V DV + L + +CVV + FNRPNL+Y V P +K CL+++ +
Sbjct: 614 ALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSV--VPKTKK-CLEDIDKFIKEN 670
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES---------------NV---S 278
++ GIIY S +CE + E L+ G + + YH +E N+ +
Sbjct: 671 HFDECGIIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICAT 730
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+AFG+GI+KP+VRFVIHH L KS+E ++Q
Sbjct: 731 VAFGMGINKPDVRFVIHHSLPKSIEGYHQ 759
Score = 416 (151.5 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
Identities = 92/214 (42%), Positives = 122/214 (57%)
Query: 102 LMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQ 161
L +E S KLLYV+PEK+AKS S + L+ + G LAR IDE HC S WGHDFRPDYQ
Sbjct: 539 LNSEHSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQ 598
Query: 162 YLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAA 221
L ILK FP++P+L LTATAT V DV + L + +CVV + FNRPNL+Y V P
Sbjct: 599 SLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSV--VPKT 656
Query: 222 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAF 281
+K CL+++ + ++ GIIY S +CE + E L+ G + + YH +E
Sbjct: 657 KK-CLEDIDKFIKENHFDECGIIYCLSRMDCEKVSERLQEFGHKAAFYHGSME------- 708
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLG 315
P R I SK N ++AFG+G
Sbjct: 709 ------PEQRAFIQTQWSKDEINIICATVAFGMG 736
Score = 87 (35.7 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG 92
++PW+ ++ K F FRPNQ IN + D ++MPTG
Sbjct: 434 EFPWTRKLEVNNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTG 478
>DICTYBASE|DDB_G0272384 [details] [associations]
symbol:DDB_G0272384 "Bloom syndrome-like protein"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0272384 GO:GO:0005524
GO:GO:0005634 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 EMBL:AAFI02000008 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 KO:K10901
TIGRFAMs:TIGR00614 RefSeq:XP_645178.2 ProteinModelPortal:Q55A06
EnsemblProtists:DDB0233085 GeneID:8618350 KEGG:ddi:DDB_G0272384
OMA:YQQTGRA Uniprot:Q55A06
Length = 973
Score = 404 (147.3 bits), Expect = 2.8e-46, Sum P(2) = 2.8e-46
Identities = 95/280 (33%), Positives = 158/280 (56%)
Query: 7 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN 64
W + V + + F +FR Q+ AIN L +D + +PT S ++ S++ +
Sbjct: 462 WHELVETCNRDIFGNKEFRNLQIEAINSILHDRDTFVSLPTGGGKSLCFQIPSIVDHR-G 520
Query: 65 LTDFRPNQLAAI---NIALLKKDAI---IIMPTGKLLKKKKIC---LMTESSSLKLLYVS 115
+T F + L A+ + LK I I +G + + + L E+ LKL+Y++
Sbjct: 521 VT-FVISPLLALMQDQVHKLKSLGIPAESINSSGSQRENRDVLDQLLNGETCKLKLIYIT 579
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE+LA+S+ F+ L ++Y G L R+ +DE HC S WGH FRP Y+ +S + FP VPI
Sbjct: 580 PERLAQSE-FLHLLDQLYDQGRLRRLVVDEAHCISEWGHSFRPKYRLISTFRDRFPSVPI 638
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
TA+AT V +D++ L++ + + I + F RPNL Y+VR K + ++ L ++ + +S
Sbjct: 639 SAFTASATPNVEIDIKNSLKMVNPITINSSFLRPNLLYQVRQKQSDEESLLKDIYNFISF 698
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES 275
++ N +GIIY +++ECE + + L RGL + YHAKL +
Sbjct: 699 KYPNSTGIIYCATVRECEIVADYLSERGLSSNFYHAKLSN 738
Score = 119 (46.9 bits), Expect = 2.8e-46, Sum P(2) = 2.8e-46
Identities = 24/42 (57%), Positives = 32/42 (76%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHS 318
+IAFG+GIDK + RFVIHH + +SME++YQ + G GKHS
Sbjct: 759 TIAFGMGIDKGDTRFVIHHSMPQSMESYYQQTGRAGRDGKHS 800
>FB|FBgn0002906 [details] [associations]
symbol:Blm "Bloom syndrome helicase ortholog" species:7227
"Drosophila melanogaster" [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IGI;IMP] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0000731 "DNA
synthesis involved in DNA repair" evidence=IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0045003 "double-strand break repair via synthesis-dependent
strand annealing" evidence=IMP] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0000732 "strand displacement" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000403 "Y-form DNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0000733 "DNA strand renaturation"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IMP] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:1901291 "negative
regulation of double-strand break repair via single-strand
annealing" evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 EMBL:AE014297
GO:GO:0005524 GO:GO:0005634 GO:GO:0006260 Gene3D:1.10.10.10
InterPro:IPR011991 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0007131 GO:GO:0045003 eggNOG:COG0514
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 EMBL:U92536 RefSeq:NP_524319.2
UniGene:Dm.2444 ProteinModelPortal:Q9VGI8 SMR:Q9VGI8 DIP:DIP-23386N
MINT:MINT-784091 STRING:Q9VGI8 PaxDb:Q9VGI8 PRIDE:Q9VGI8
EnsemblMetazoa:FBtr0082434 GeneID:41366 KEGG:dme:Dmel_CG6920
CTD:41366 FlyBase:FBgn0002906 InParanoid:Q9VGI8 OMA:KISSSAR
OrthoDB:EOG4JDFNV PhylomeDB:Q9VGI8 ChiTaRS:BLM GenomeRNAi:41366
NextBio:823498 Bgee:Q9VGI8 GermOnline:CG6920 GO:GO:0000403
GO:GO:0000733 GO:GO:0000731 GO:GO:1901291 GO:GO:0000732
Uniprot:Q9VGI8
Length = 1487
Score = 483 (175.1 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 121/328 (36%), Positives = 177/328 (53%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------Y--P--WSDRVRS 57
S R+ L F L FRPNQL IN LL D ++MPT Y P ++ V
Sbjct: 722 STRLMHGLSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTI 781
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPE 117
V+ +L + N+LA+++I M + + L ++ +KLLYV+PE
Sbjct: 782 VISPLKSLIFDQINKLASLDICAKSLSGEQKMADVMAIYRD---LESQPPMVKLLYVTPE 838
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
K++ S F L + ++R IDE HC S WGHDFRPDY+ L +LK FP+VP +
Sbjct: 839 KISSSARFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIA 898
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT +V LD+ L +++C + FNR NL Y R+ P LD+++ + +
Sbjct: 899 LTATATPRVRLDILAQLNLKNCKWFLSSFNRSNLRY--RVLPKKGVSTLDDISRYIRSKP 956
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL-----ESN-------------VSI 279
++ SGIIY S KEC++ +++ G+R +YHA L ES ++
Sbjct: 957 QHFSGIIYCLSRKECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATV 1016
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
AFG+GIDKP+VRFV+H+ L KS+E +YQ
Sbjct: 1017 AFGMGIDKPDVRFVLHYSLPKSIEGYYQ 1044
>DICTYBASE|DDB_G0292130 [details] [associations]
symbol:blm "Bloom syndrome protein" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA;ISS] [GO:0006281 "DNA repair" evidence=IEA;ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
dictyBase:DDB_G0292130 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000155_GR EMBL:AAFI02000187 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
RefSeq:XP_629849.1 ProteinModelPortal:Q54DM3 STRING:Q54DM3
EnsemblProtists:DDB0233082 GeneID:8628529 KEGG:ddi:DDB_G0292130
InParanoid:Q54DM3 OMA:IANCEAS ProtClustDB:CLSZ2846594
Uniprot:Q54DM3
Length = 1259
Score = 479 (173.7 bits), Expect = 2.3e-44, P = 2.3e-44
Identities = 118/334 (35%), Positives = 177/334 (52%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------Y--P--WSD 53
N+PWS ++ + +S F FR NQ IN L D ++MPT Y P +
Sbjct: 507 NFPWSQKIIDINRSMFGFHVFRENQREIINSTLEGNDTFVLMPTGGGKSLCYQIPALYQK 566
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLY 113
+ V+ +L + + L + + + + K + + S ++LLY
Sbjct: 567 GLTIVISPLISLINDQVEFLETLGYPAAALSSAVSSDAAIDVYKD---IRSNSPKIRLLY 623
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
++PE++ KS S + L + + G +RI IDE HC S WGHDFRPDY+ LSIL+ FP V
Sbjct: 624 LTPERVVKSDSLIEILANLDQKGLFSRIVIDEAHCVSQWGHDFRPDYKELSILRRKFPKV 683
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
PIL LTATAT +V DV L + + V K FNRPNL Y+V K K +D+++ +
Sbjct: 684 PILALTATATERVRNDVIYNLSMRNPVCFKQSFNRPNLIYQVLKKT---KQVVDDMSKFI 740
Query: 234 SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----------------- 276
+ ++SGI+Y S +CE++ + LR + + YHA LE++
Sbjct: 741 HSTYPDKSGIVYCISKYDCENVAKRLRELKISAAHYHAGLENDERAKVQANWQKGRIKVI 800
Query: 277 -VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
+IAFG+GI+K +VRFVIHH + KS+E +YQ S
Sbjct: 801 VATIAFGMGINKADVRFVIHHSVPKSLEGYYQES 834
>TAIR|locus:2074429 [details] [associations]
symbol:RECQI1 "RECQ helicase l1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0042631 "cellular response to water deprivation" evidence=IEP]
[GO:0070417 "cellular response to cold" evidence=IEP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
GO:GO:0070417 GO:GO:0042631 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AC012393 eggNOG:COG0514 KO:K10901
TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388
EMBL:AJ404470 IPI:IPI00524157 RefSeq:NP_187225.2 UniGene:At.10170
UniGene:At.49591 ProteinModelPortal:Q9FT74 SMR:Q9FT74
EnsemblPlants:AT3G05740.1 GeneID:819743 KEGG:ath:AT3G05740
TAIR:At3g05740 InParanoid:Q9FT74 OMA:RFVIHNT PhylomeDB:Q9FT74
ProtClustDB:CLSN2690733 Genevestigator:Q9FT74 Uniprot:Q9FT74
Length = 606
Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 119/313 (38%), Positives = 172/313 (54%)
Query: 24 FRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-----LTDFRPNQLAAI 76
FRP Q A ++ +KD ++MPT S ++ + LK+ L +Q+ A+
Sbjct: 207 FRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLPATLKAGVTIVISPLLSLIQDQIVAL 266
Query: 77 NIAL-LKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKA 135
N+ + + T L ++ S KLLYV+PEK+A S SF+ L+ + +
Sbjct: 267 NLKFGIPATFLNSQQTSSQAAAVLQELRRDNPSCKLLYVTPEKIAGSSSFLETLRCLDRK 326
Query: 136 GCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQ 195
G LA +DE HC S WGHDFRPDY+ L LK FP VP++ LTATAT V DV K L+
Sbjct: 327 GLLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPRVPVMALTATATESVCQDVLKSLR 386
Query: 196 IEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDL 255
I V+K F+R NL YEV +K K+ L +L +L+ RF++QSGI+Y S EC D+
Sbjct: 387 IPRAPVLKMSFDRINLKYEVIVKT---KEPLKQLQELLRDRFKDQSGIVYCLSKSECVDV 443
Query: 256 REELRNR-GLRVSAYHAKLESN------------------VSIAFGLGIDKPNVRFVIHH 296
+ L + ++ YHA + + +IAFG+GIDK +VRFVIH+
Sbjct: 444 AKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHN 503
Query: 297 CLSKSMENFYQVS 309
LSK++E++YQ S
Sbjct: 504 TLSKAVESYYQES 516
>UNIPROTKB|Q9DEY9 [details] [associations]
symbol:blm "Bloom syndrome protein homolog" species:8355
"Xenopus laevis" [GO:0000729 "DNA double-strand break processing"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 HOVERGEN:HBG004850 GO:GO:0000729
CTD:641 EMBL:AF307841 RefSeq:NP_001079095.1 UniGene:Xl.706
ProteinModelPortal:Q9DEY9 GeneID:373628 KEGG:xla:373628
Xenbase:XB-GENE-982565 Uniprot:Q9DEY9
Length = 1364
Score = 392 (143.0 bits), Expect = 1.1e-43, Sum P(2) = 1.1e-43
Identities = 99/284 (34%), Positives = 148/284 (52%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
N+P S + + KF L FR NQL AIN L +D I+MPT S ++ +
Sbjct: 600 NFPHSKEMMKIFHKKFGLHRFRTNQLEAINACLCGEDCFILMPTGGGKSLCYQLPGCISP 659
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMP----TGKLLKKKKICLMTESSS----LKLLY 113
+ P L ++ + ++K + +P TG + + + S +KLLY
Sbjct: 660 GVTIV-ISP--LRSLIVDQVQKLTSLDIPATYLTGDKTDAEAASIYLQLSKKDPIIKLLY 716
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
V+PEK+ S ++ ++ +Y+ LAR IDE HC S WGHDFRPDY+ L++L+ F V
Sbjct: 717 VTPEKVCASTRLISTMENLYERQLLARFVIDEAHCVSQWGHDFRPDYKRLNVLRQKFQSV 776
Query: 174 PILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
P++ LTATA +V D+ L++ + FNR NL YEV K ++ LD + +
Sbjct: 777 PMMALTATANPRVKKDILNQLKMTKPQIFTMSFNRDNLKYEVLPKKP-KRVALD-CVEWI 834
Query: 234 SRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL-ESN 276
+ N SGIIY S EC+ + + L+ GL AYHA L +SN
Sbjct: 835 KKHHPNDSGIIYCLSRHECDTMADTLQKEGLAALAYHAGLADSN 878
Score = 340 (124.7 bits), Expect = 1.9e-29, P = 1.9e-29
Identities = 77/207 (37%), Positives = 113/207 (54%)
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KLLYV+PEK+ S ++ ++ +Y+ LAR IDE HC S WGHDFRPDY+ L++L+
Sbjct: 712 IKLLYVTPEKVCASTRLISTMENLYERQLLARFVIDEAHCVSQWGHDFRPDYKRLNVLRQ 771
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDE 228
F VP++ LTATA +V D+ L++ + FNR NL YEV K ++ LD
Sbjct: 772 KFQSVPMMALTATANPRVKKDILNQLKMTKPQIFTMSFNRDNLKYEVLPKKP-KRVALD- 829
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKP 288
+ + + N SGIIY S EC+ + + L+ GL AYHA G+
Sbjct: 830 CVEWIKKHHPNDSGIIYCLSRHECDTMADTLQKEGLAALAYHA------------GLADS 877
Query: 289 NVRFVIHHCLSKSMENFYQVSIAFGLG 315
N +V H +++ +IAFG+G
Sbjct: 878 NRDYVQHKWINQDDCQVICATIAFGMG 904
Score = 112 (44.5 bits), Expect = 1.1e-43, Sum P(2) = 1.1e-43
Identities = 21/32 (65%), Positives = 27/32 (84%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
+IAFG+GIDKP+VR+VIH L KS+E +YQ S
Sbjct: 898 TIAFGMGIDKPDVRYVIHASLPKSVEGYYQES 929
>TAIR|locus:2127998 [details] [associations]
symbol:RecQl3 "AT4G35740" species:3702 "Arabidopsis
thaliana" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS;IDA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0009378 "four-way junction helicase activity" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043138
"3'-5' DNA helicase activity" evidence=IDA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
EMBL:AL161588 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG0514 KO:K10901 TIGRFAMs:TIGR00614 GO:GO:0036310
GO:GO:0009378 GO:GO:0008026 EMBL:AL031135 GO:GO:0043138 PIR:T04679
HSSP:P15043 EMBL:AJ404472 EMBL:AK229155 IPI:IPI00541767
IPI:IPI00545081 RefSeq:NP_195299.2 RefSeq:NP_849500.1
UniGene:At.20216 ProteinModelPortal:Q9FT72 SMR:Q9FT72 IntAct:Q9FT72
PaxDb:Q9FT72 PRIDE:Q9FT72 EnsemblPlants:AT4G35740.1 GeneID:829727
KEGG:ath:AT4G35740 TAIR:At4g35740 HOGENOM:HOG000239549
InParanoid:Q9FT72 OMA:YEVRYKD PhylomeDB:Q9FT72
ProtClustDB:CLSN2680292 Genevestigator:Q9FT72 Uniprot:Q9FT72
Length = 713
Score = 460 (167.0 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 127/331 (38%), Positives = 173/331 (52%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSD--RVRSVLKS 61
N + + +L+ F DFR QL AI + +D +MPT S ++ ++ K
Sbjct: 17 NVAGKEALVKLLRWHFGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAKP 76
Query: 62 KFNLTDFRPNQLAAINIALLKKDAII---IMPTGKLLKKKKICLMTESS--SLKLLYVSP 116
L L + LK+ I + T K KI +S S++LLYV+P
Sbjct: 77 GIVLVVSPLIALMENQVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTP 136
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
E +A +K FM KL+K++ G L IAIDE HC SSWGHDFRP Y+ LS L+ DVP+L
Sbjct: 137 ELIA-TKGFMLKLRKLHSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVL 195
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR 236
LTATA KV DV L + + +V+K+ FNRPN+FYEVR K D L +L+ +
Sbjct: 196 ALTATAAPKVQKDVIDSLNLRNPLVLKSSFNRPNIFYEVRYKDLLDNAYTD-LGNLL-KS 253
Query: 237 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA----KLESNV--------------S 278
N IIY C+DL L + G+ +AYHA K+ S V +
Sbjct: 254 CGNICAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVAT 313
Query: 279 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
+AFG+GIDK +VR V H + KSME+FYQ S
Sbjct: 314 VAFGMGIDKKDVRMVCHFNIPKSMESFYQES 344
>UNIPROTKB|F1ND40 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0000079 "regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=IEA] [GO:0000405 "bubble
DNA binding" evidence=IEA] [GO:0000723 "telomere maintenance"
evidence=IEA] [GO:0000729 "DNA double-strand break processing"
evidence=IEA] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0002039 "p53
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0009378
"four-way junction helicase activity" evidence=IEA] [GO:0010165
"response to X-ray" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0045120 "pronucleus" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045950 "negative regulation of mitotic recombination"
evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
evidence=IEA] [GO:0046641 "positive regulation of alpha-beta T cell
proliferation" evidence=IEA] [GO:0051098 "regulation of binding"
evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
[GO:0051782 "negative regulation of cell division" evidence=IEA]
[GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0010165
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AADN02038832 IPI:IPI00823016 Ensembl:ENSGALT00000038179
ArrayExpress:F1ND40 Uniprot:F1ND40
Length = 1142
Score = 382 (139.5 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
Identities = 101/277 (36%), Positives = 143/277 (51%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNL 65
S+ + + KF L FR NQL AIN ALL +D I+MPT S ++ + + + +
Sbjct: 382 SEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTV 441
Query: 66 TDFRPNQLAAINIALLKK-DAIIIMPTGKLL----KKKKICLMTESSSLKLLYVSPEKLA 120
L + LK D TG + K + L + +KLLYV+PEK+
Sbjct: 442 VISPLRSLIIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVC 501
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
S ++ L+ +Y LAR IDE HC S WGHDFR DY+ L++L+ F VP++ LTA
Sbjct: 502 ASNRLLSALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMALTA 561
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TA +V D+Q L++ V FNR NL Y+V K +K +D L + + + +
Sbjct: 562 TANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDVLPKKP-KKVAMDCL-EWIKKYHPHD 619
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKL-ESN 276
SGIIY S EC+ L+ GL AYHA L +SN
Sbjct: 620 SGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDSN 656
Score = 112 (44.5 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
Identities = 21/32 (65%), Positives = 27/32 (84%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
+IAFG+GIDKP+VR+VIH L KS+E +YQ S
Sbjct: 676 TIAFGMGIDKPDVRYVIHASLPKSIEGYYQES 707
>UNIPROTKB|F1P3V1 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0051880 "G-quadruplex DNA binding" evidence=IEA] [GO:0000079
"regulation of cyclin-dependent protein serine/threonine kinase
activity" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000800 "lateral element" evidence=IEA] [GO:0001673 "male germ
cell nucleus" evidence=IEA] [GO:0002039 "p53 binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0009378 "four-way junction helicase
activity" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0016363 "nuclear matrix" evidence=IEA]
[GO:0016605 "PML body" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045950 "negative regulation of
mitotic recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
differentiation" evidence=IEA] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0051259 "protein
oligomerization" evidence=IEA] [GO:0051782 "negative regulation of
cell division" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
GO:GO:0005737 GO:GO:0045893 GO:GO:0000079 GO:GO:0005730
GO:GO:0016605 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 GO:GO:0001673 GO:GO:0003697 GO:GO:0016363
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AADN02038832 IPI:IPI00585933 Ensembl:ENSGALT00000013437
OMA:CDTTAAI ArrayExpress:F1P3V1 Uniprot:F1P3V1
Length = 1380
Score = 382 (139.5 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
Identities = 101/277 (36%), Positives = 143/277 (51%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNL 65
S+ + + KF L FR NQL AIN ALL +D I+MPT S ++ + + + +
Sbjct: 620 SEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTV 679
Query: 66 TDFRPNQLAAINIALLKK-DAIIIMPTGKLL----KKKKICLMTESSSLKLLYVSPEKLA 120
L + LK D TG + K + L + +KLLYV+PEK+
Sbjct: 680 VISPLRSLIIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVC 739
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
S ++ L+ +Y LAR IDE HC S WGHDFR DY+ L++L+ F VP++ LTA
Sbjct: 740 ASNRLLSALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMALTA 799
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TA +V D+Q L++ V FNR NL Y+V K +K +D L + + + +
Sbjct: 800 TANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDVLPKKP-KKVAMDCL-EWIKKYHPHD 857
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKL-ESN 276
SGIIY S EC+ L+ GL AYHA L +SN
Sbjct: 858 SGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDSN 894
Score = 112 (44.5 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
Identities = 21/32 (65%), Positives = 27/32 (84%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
+IAFG+GIDKP+VR+VIH L KS+E +YQ S
Sbjct: 914 TIAFGMGIDKPDVRYVIHASLPKSIEGYYQES 945
>UNIPROTKB|Q9I920 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000729 "DNA
double-strand break processing" evidence=ISS] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AB040747 IPI:IPI00575589 UniGene:Gga.1914
ProteinModelPortal:Q9I920 STRING:Q9I920 PRIDE:Q9I920
HOGENOM:HOG000095239 HOVERGEN:HBG004850 InParanoid:Q9I920
OrthoDB:EOG4640B3 GO:GO:0000729 Uniprot:Q9I920
Length = 1142
Score = 382 (139.5 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
Identities = 101/277 (36%), Positives = 143/277 (51%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNL 65
S+ + + KF L FR NQL AIN ALL +D I+MPT S ++ + + + +
Sbjct: 382 SEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTV 441
Query: 66 TDFRPNQLAAINIALLKK-DAIIIMPTGKLL----KKKKICLMTESSSLKLLYVSPEKLA 120
L + LK D TG + K + L + +KLLYV+PEK+
Sbjct: 442 VISPLRSLIIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVC 501
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
S ++ L+ +Y LAR IDE HC S WGHDFR DY+ L++L+ F VP++ LTA
Sbjct: 502 ASNRLLSALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMALTA 561
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TA +V D+Q L++ V FNR NL Y+V K +K +D L + + + +
Sbjct: 562 TANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDVLPKKP-KKVAMDCL-EWIKKYHPHD 619
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKL-ESN 276
SGIIY S EC+ L+ GL AYHA L +SN
Sbjct: 620 SGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDSN 656
Score = 107 (42.7 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
+IAFG+GIDKP+VR+VIH L KS+E +Y S
Sbjct: 676 TIAFGMGIDKPDVRYVIHASLPKSVEGYYHES 707
>UNIPROTKB|I3LFW3 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016591 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:FP565693
Ensembl:ENSSSCT00000025315 OMA:DALIIMP Uniprot:I3LFW3
Length = 432
Score = 318 (117.0 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 99/287 (34%), Positives = 139/287 (48%)
Query: 10 RVRSVLKSKFNLTDFR-PNQLAAINIALLK--KDAIIIMPTD------Y--P--WSDRVR 56
RVRS LK F F+ P Q +AI +A++K KD + MPT Y P + +
Sbjct: 11 RVRSTLKKVFGFDSFKTPLQESAI-MAVVKGDKDVFVCMPTGAGKSLCYQLPALLAKGIT 69
Query: 57 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSP 116
V+ L + + L A+ I + ++ + K L L E KLLY++P
Sbjct: 70 IVISPLIALIQDQVDHLLALKIHVCSLNSKLSAQERKELLSD---LEQEKPRTKLLYITP 126
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
E +A S SF L+ + L+ + +DE HC S WGHDFRPDY L L++ P +
Sbjct: 127 E-MAASASFQPTLKSLLARHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLAHAPCV 185
Query: 177 GLTATATTKVMLDVQKMLQIEDCVV-IKAPFNRPNLFYEVRIK-----PAAQ-KD-CLDE 228
LTATAT +V DV L ++ V K P R NLFY+V+ K P +D CL
Sbjct: 186 ALTATATLQVQEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLSDPYGNLRDFCLKA 245
Query: 229 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES 275
L + GI+Y + + CE L EL RG+ AYHA L++
Sbjct: 246 LGQKADKGLSG-CGIVYCRTREACEQLAIELSARGVNAKAYHAGLKA 291
Score = 99 (39.9 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
+I+FG+G+DK NVRFV H ++KSM +YQ S
Sbjct: 312 TISFGMGVDKANVRFVAHWNIAKSMAGYYQES 343
>UNIPROTKB|E1BQ04 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051782 "negative regulation of cell division" evidence=IEA]
[GO:0051259 "protein oligomerization" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0046641 "positive
regulation of alpha-beta T cell proliferation" evidence=IEA]
[GO:0046632 "alpha-beta T cell differentiation" evidence=IEA]
[GO:0045950 "negative regulation of mitotic recombination"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045120 "pronucleus" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0031297 "replication fork processing"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0009378 "four-way junction helicase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0002039 "p53
binding" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000405
"bubble DNA binding" evidence=IEA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0046632
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 OMA:NANDQAI GO:GO:0000800
GO:GO:0045120 GO:GO:0000405 GO:GO:0009378 GO:GO:0051880
GO:GO:0051782 GO:GO:0045950 GO:GO:0046641 GO:GO:0051098
GO:GO:0031297 EMBL:DAAA02052171 IPI:IPI01003766
Ensembl:ENSBTAT00000027057 Uniprot:E1BQ04
Length = 1417
Score = 414 (150.8 bits), Expect = 2.5e-37, P = 2.5e-37
Identities = 107/287 (37%), Positives = 151/287 (52%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPW----SD 53
N+P + + + KF L +FR NQL AIN ALL +D I+MPT Y S
Sbjct: 648 NFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 707
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINI--ALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
V V+ +L + +L +++I L D T L+ K + +KL
Sbjct: 708 GVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSK-----KDPIIKL 762
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFRPDY+ ++IL+ FP
Sbjct: 763 LYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRPDYKRMNILRQKFP 822
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNL-FYEVRIKPAAQK-DCLDEL 229
VP++ LTATA +V D+ L+I V FNR NL +Y + KP DCL+ +
Sbjct: 823 SVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWI 882
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN 276
+ + SGIIY S +EC+ + E L+N GL AYHA L +
Sbjct: 883 R----KHHPHDSGIIYCLSRRECDTMAETLQNDGLAALAYHAGLSDS 925
>ZFIN|ZDB-GENE-070702-5 [details] [associations]
symbol:blm "Bloom syndrome" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0045950 "negative
regulation of mitotic recombination" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
ZFIN:ZDB-GENE-070702-5 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 EMBL:CABZ01019975
EMBL:CABZ01036951 EMBL:CABZ01036952 EMBL:CABZ01036953
EMBL:CABZ01036954 EMBL:CABZ01036955 EMBL:CABZ01036956
EMBL:CABZ01036957 EMBL:CABZ01036958 EMBL:CABZ01036959
EMBL:CABZ01036960 EMBL:CABZ01036961 EMBL:CABZ01036962
EMBL:CABZ01036963 EMBL:CABZ01036964 EMBL:CABZ01039756 EMBL:CR450750
IPI:IPI00934934 Ensembl:ENSDART00000110746 Uniprot:E7EZY7
Length = 1420
Score = 410 (149.4 bits), Expect = 6.8e-37, P = 6.8e-37
Identities = 100/282 (35%), Positives = 148/282 (52%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
N+P S + + KF L FR NQL AIN +LL +D ++MPT S ++ + + +
Sbjct: 640 NFPHSPEMMKIFHKKFGLHQFRFNQLEAINASLLGEDTFVLMPTGGGKSLCYQLPACVSA 699
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKK-------ICLMTESSSLKLLYV 114
+ P + ++ + K + I T KK + L + ++KLLY
Sbjct: 700 GVTVV-ISPLRSLIVD-QVQKLTTLDICATSLSGDKKDSEAARIYMQLSRKDPAIKLLYA 757
Query: 115 SPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+PEK+ S ++ LQ +Y+ G LAR+ IDE HC S WGHDFRPDY+ L L+ MFP+VP
Sbjct: 758 TPEKVCASGRMISALQNLYERGLLARLVIDEAHCVSQWGHDFRPDYKRLHELRRMFPNVP 817
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
I+ LTATAT +V D+ L + V FNR NL Y V K + D +E +
Sbjct: 818 IMALTATATPRVQKDILNQLAMTRPQVFTMSFNRNNLKYSVLPKKPKKVD--EECIQWIK 875
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN 276
+ + SGI+Y S +C+ L + L+ G+ AYHA L +
Sbjct: 876 KYYPRDSGIVYCLSRNDCDTLADSLQRAGIAALAYHAGLSDS 917
Score = 351 (128.6 bits), Expect = 1.3e-30, P = 1.3e-30
Identities = 80/214 (37%), Positives = 117/214 (54%)
Query: 102 LMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQ 161
L + ++KLLY +PEK+ S ++ LQ +Y+ G LAR+ IDE HC S WGHDFRPDY+
Sbjct: 745 LSRKDPAIKLLYATPEKVCASGRMISALQNLYERGLLARLVIDEAHCVSQWGHDFRPDYK 804
Query: 162 YLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAA 221
L L+ MFP+VPI+ LTATAT +V D+ L + V FNR NL Y V K
Sbjct: 805 RLHELRRMFPNVPIMALTATATPRVQKDILNQLAMTRPQVFTMSFNRNNLKYSVLPKKPK 864
Query: 222 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAF 281
+ D +E + + + SGI+Y S +C+ L + L+ G+ AYHA L +
Sbjct: 865 KVD--EECIQWIKKYYPRDSGIVYCLSRNDCDTLADSLQRAGIAALAYHAGLSDS----- 917
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLG 315
D+ +V + +++ +IAFG+G
Sbjct: 918 ----DR---EYVQNKWINQDGCQVMCATIAFGMG 944
Score = 129 (50.5 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 32/89 (35%), Positives = 50/89 (56%)
Query: 221 AQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIA 280
++ DC D LAD + R + + Y + + + RE ++N+ + +IA
Sbjct: 889 SRNDC-DTLADSLQRA--GIAALAYHAGLSDSD--REYVQNKWINQDGCQVMC---ATIA 940
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
FG+GIDKP+VR+VIH L KS+E +YQ S
Sbjct: 941 FGMGIDKPDVRYVIHASLPKSVEGYYQES 969
>UNIPROTKB|J3KTQ2 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5
Ensembl:ENST00000578201 Uniprot:J3KTQ2
Length = 480
Score = 314 (115.6 bits), Expect = 8.1e-37, Sum P(2) = 8.1e-37
Identities = 101/286 (35%), Positives = 140/286 (48%)
Query: 10 RVRSVLKSKFNLTDFR-PNQLAAINIALLK--KDAIIIMPTDYPWSDRVR-SVLKSKFNL 65
RVRS LK F F+ P Q +A +A++K KD + MPT S + L +K +
Sbjct: 15 RVRSTLKKVFGFDSFKTPLQESA-TMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAK-GI 72
Query: 66 TDFRPNQLAAINIA---LLKKDAIIIMPTGKLL--KKKKIC--LMTESSSLKLLYVSPEK 118
T +A I LL + KL ++K++ L E K+LY++PE
Sbjct: 73 TIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYITPE- 131
Query: 119 LAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGL 178
+A S SF L + L+ + +DE HC S WGHDFRPDY L L++ P + L
Sbjct: 132 MAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPCVAL 191
Query: 179 TATATTKVMLDVQKMLQIEDCVVI-KAPFNRPNLFYEVRIK-----PAAQ-KD-CLDELA 230
TATAT +V DV L ++ V I K P R NLFY+V+ K P KD CL L
Sbjct: 192 TATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLKALG 251
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN 276
+ GI+Y + + CE L EL RG+ AYHA L+++
Sbjct: 252 QEADKGLSG-CGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKAS 296
Score = 102 (41.0 bits), Expect = 8.1e-37, Sum P(2) = 8.1e-37
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSFRSRY 323
+I+FG+G+DK NVRFV H ++KSM +YQ S G GK S+ Y
Sbjct: 316 TISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLY 362
>UNIPROTKB|Q6P4G0 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
EMBL:CH471099 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:AC087749 HOGENOM:HOG000044388
IPI:IPI01015246 UniGene:Hs.632229 HGNC:HGNC:9950 HOVERGEN:HBG057065
ChiTaRS:RECQL5 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
EMBL:BC063440 IPI:IPI00185769 ProteinModelPortal:Q6P4G0
STRING:Q6P4G0 PRIDE:Q6P4G0 Ensembl:ENST00000423245 UCSC:uc010dgk.3
ArrayExpress:Q6P4G0 Bgee:Q6P4G0 Uniprot:Q6P4G0
Length = 964
Score = 294 (108.6 bits), Expect = 8.2e-37, Sum P(3) = 8.2e-37
Identities = 72/183 (39%), Positives = 96/183 (52%)
Query: 102 LMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQ 161
L E K+LY++PE +A S SF L + L+ + +DE HC S WGHDFRPDY
Sbjct: 89 LEREKPQTKILYITPE-MAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYL 147
Query: 162 YLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVI-KAPFNRPNLFYEVRIK-- 218
L L++ P + LTATAT +V DV L ++ V I K P R NLFY+V+ K
Sbjct: 148 RLGALRSRLGHAPCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKEL 207
Query: 219 ---PAAQ-KD-CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL 273
P KD CL L + GI+Y + + CE L EL RG+ AYHA L
Sbjct: 208 ISDPYGNLKDFCLKALGQEADKGLSG-CGIVYCRTREACEQLAIELSCRGVNAKAYHAGL 266
Query: 274 ESN 276
+++
Sbjct: 267 KAS 269
Score = 102 (41.0 bits), Expect = 8.2e-37, Sum P(3) = 8.2e-37
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSFRSRY 323
+I+FG+G+DK NVRFV H ++KSM +YQ S G GK S+ Y
Sbjct: 289 TISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLY 335
Score = 61 (26.5 bits), Expect = 8.2e-37, Sum P(3) = 8.2e-37
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 47 TDYPWSD--RVRSVLKSKFNLTDFR-PNQLAAINIALLKKDAIIIMPTGKLLKKKKICLM 103
T +P+ RVRS LK F F+ P Q +A +A++K I++ P L++ + L+
Sbjct: 6 TTFPFDPERRVRSTLKKVFGFDSFKTPLQESA-TMAVVKGITIVVSPLIALIQDQVDHLL 64
Query: 104 T 104
T
Sbjct: 65 T 65
Score = 61 (26.5 bits), Expect = 8.2e-37, Sum P(3) = 8.2e-37
Identities = 26/87 (29%), Positives = 41/87 (47%)
Query: 10 RVRSVLKSKFNLTDFR-PNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDF 68
RVRS LK F F+ P Q +A +A++K I++ P D+V +L K ++
Sbjct: 15 RVRSTLKKVFGFDSFKTPLQESA-TMAVVKGITIVVSPLIALIQDQVDHLLTLKVRVSSL 73
Query: 69 RPNQLAAINIALLKKDAIIIMPTGKLL 95
++L+A L D P K+L
Sbjct: 74 N-SKLSAQERKELLADLEREKPQTKIL 99
>UNIPROTKB|E1BKM5 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
EMBL:DAAA02049519 IPI:IPI00698201 RefSeq:NP_001179255.1
UniGene:Bt.62459 Ensembl:ENSBTAT00000015555 GeneID:512590
KEGG:bta:512590 OMA:DPKIEEF NextBio:20870462 Uniprot:E1BKM5
Length = 987
Score = 328 (120.5 bits), Expect = 2.6e-36, Sum P(2) = 2.6e-36
Identities = 102/296 (34%), Positives = 143/296 (48%)
Query: 3 PNYPWSD--RVRSVLKSKFNLTDFR-PNQLAAINIALLK--KDAIIIMPTD------Y-- 49
P+ P+ RVRS LK F F+ P Q AI +A++K KD + MPT Y
Sbjct: 5 PSSPFDPERRVRSTLKKVFGFDSFKTPLQEKAI-MAVVKGDKDVFVCMPTGAGKSLCYQL 63
Query: 50 P--WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESS 107
P + + V+ L + + L A+ + + ++ + + K L L E
Sbjct: 64 PALLAKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSVQERKELLSD---LEQEKP 120
Query: 108 SLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILK 167
KLLY++PE +A S SF L + L+ + +DE HC S WGHDFRPDY L L+
Sbjct: 121 QTKLLYITPE-MAASTSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALR 179
Query: 168 TMFPDVPILGLTATATTKVMLDVQKMLQIEDCVV-IKAPFNRPNLFYEVRIK-----PAA 221
+ D P + LTATAT +V DV L ++ V K P R NLFY+V+ K P
Sbjct: 180 SRLADAPCVALTATATPQVREDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLPDPYG 239
Query: 222 Q-KD-CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES 275
+D CL L + GIIY + + CE L EL RG+ AYHA L++
Sbjct: 240 NLRDFCLKALGQKADKGLSG-CGIIYCRTREACEQLATELSYRGVNAKAYHAGLKA 294
Score = 102 (41.0 bits), Expect = 2.6e-36, Sum P(2) = 2.6e-36
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSFRSRY 323
+I+FG+G+DK NVRFV H ++KSM +YQ S G GK S+ Y
Sbjct: 315 TISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLY 361
>RGD|1308810 [details] [associations]
symbol:Blm "Bloom syndrome, RecQ helicase-like" species:10116
"Rattus norvegicus" [GO:0000079 "regulation of cyclin-dependent
protein serine/threonine kinase activity" evidence=ISO] [GO:0000405
"bubble DNA binding" evidence=ISO] [GO:0000723 "telomere
maintenance" evidence=ISO] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0000800 "lateral element" evidence=ISO]
[GO:0001673 "male germ cell nucleus" evidence=ISO] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISO] [GO:0004386
"helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA;ISO] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005657 "replication
fork" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006200 "ATP catabolic
process" evidence=ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0009378 "four-way junction helicase activity"
evidence=ISO] [GO:0010165 "response to X-ray" evidence=ISO]
[GO:0016363 "nuclear matrix" evidence=ISO] [GO:0016605 "PML body"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031297 "replication fork processing" evidence=ISO] [GO:0036310
"annealing helicase activity" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
[GO:0045120 "pronucleus" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0045950 "negative regulation of mitotic
recombination" evidence=ISO] [GO:0046632 "alpha-beta T cell
differentiation" evidence=ISO] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=ISO] [GO:0051098
"regulation of binding" evidence=ISO] [GO:0051259 "protein
oligomerization" evidence=ISO] [GO:0051276 "chromosome
organization" evidence=ISO] [GO:0051782 "negative regulation of
cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] [GO:0000781 "chromosome, telomeric region"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR012532
Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 RGD:1308810 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 IPI:IPI00561580 Ensembl:ENSRNOT00000030936
UCSC:RGD:1308810 ArrayExpress:D3ZSJ5 Uniprot:D3ZSJ5
Length = 999
Score = 397 (144.8 bits), Expect = 8.7e-36, P = 8.7e-36
Identities = 100/281 (35%), Positives = 146/281 (51%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
N+P + + + + KF L +FR NQL AIN ALL +D I+MPT S ++ + +
Sbjct: 639 NFPHTKEMMKIFRKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 698
Query: 62 KFNLTDFRPNQLAAINIALLKK-DAIIIMPTGKLLKKKKICLMTESSS----LKLLYVSP 116
+ L + L D TG + + + S +KLLYV+P
Sbjct: 699 GVTIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTP 758
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+ FP VP++
Sbjct: 759 EKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQRFPSVPVM 818
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNL-FYEVRIKPAAQKDCLDELADLMSR 235
LTATA +V D+ L+I V FNR NL +Y + KP +K LD L + + +
Sbjct: 819 ALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKP--KKVALDCL-EWIRK 875
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN 276
SGIIY S KEC+ + + L+ GL AYHA L +
Sbjct: 876 HHPYDSGIIYCLSRKECDTMADTLQREGLAALAYHAGLSDS 916
Score = 332 (121.9 bits), Expect = 8.0e-29, P = 8.0e-29
Identities = 80/208 (38%), Positives = 115/208 (55%)
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+
Sbjct: 751 IKLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQ 810
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNL-FYEVRIKPAAQKDCLD 227
FP VP++ LTATA +V D+ L+I V FNR NL +Y + KP +K LD
Sbjct: 811 RFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKP--KKVALD 868
Query: 228 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDK 287
L + + + SGIIY S KEC+ + + L+ GL AYHA L + D+
Sbjct: 869 CL-EWIRKHHPYDSGIIYCLSRKECDTMADTLQREGLAALAYHAGLSDSAR-------DE 920
Query: 288 PNVRFVIHHCLSKSMENFYQVSIAFGLG 315
V H +++ +IAFG+G
Sbjct: 921 -----VQHKWINQDNCQVICATIAFGMG 943
Score = 126 (49.4 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 30/89 (33%), Positives = 51/89 (57%)
Query: 221 AQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIA 280
++K+C D +AD + R + + Y + + R+E++++ + +IA
Sbjct: 888 SRKEC-DTMADTLQRE--GLAALAYHAGLSD--SARDEVQHKWINQDNCQVIC---ATIA 939
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
FG+GIDKP+VRFV+H L KS+E +YQ S
Sbjct: 940 FGMGIDKPDVRFVVHASLPKSVEGYYQES 968
Score = 37 (18.1 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 101 CLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMY 133
CL T +S +P+ L++ + LQK +
Sbjct: 457 CLPTTASGKTGFSATPKSLSERPPLNSHLQKSF 489
>UNIPROTKB|H0YNU5 [details] [associations]
symbol:BLM "Bloom syndrome protein" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
TIGRFAMs:TIGR00614 HGNC:HGNC:1058 EMBL:AC021422 EMBL:AC124248
ProteinModelPortal:H0YNU5 SMR:H0YNU5 Ensembl:ENST00000560509
Bgee:H0YNU5 Uniprot:H0YNU5
Length = 1286
Score = 387 (141.3 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 102/287 (35%), Positives = 148/287 (51%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPW----SD 53
++P + + + KF L +FR NQL AIN ALL +D I+MPT Y S
Sbjct: 648 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 707
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINI--ALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
V V+ +L + +L +++I L D T L+ K + +KL
Sbjct: 708 GVTVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSK-----KDPIIKL 762
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+ FP
Sbjct: 763 LYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFP 822
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNL-FYEVRIKPAAQK-DCLDEL 229
VP++ LTATA +V D+ L+I V FNR NL +Y + KP DCL+ +
Sbjct: 823 SVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWI 882
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN 276
+ SGIIY S +EC+ + + L+ GL AYHA L +
Sbjct: 883 R----KHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDS 925
Score = 123 (48.4 bits), Expect = 0.00036, P = 0.00036
Identities = 30/89 (33%), Positives = 50/89 (56%)
Query: 221 AQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIA 280
++++C D +AD + R + + Y + + R+E++ + + +IA
Sbjct: 897 SRREC-DTMADTLQRD--GLAALAYHAGLSD--SARDEVQQKWINQDGCQVIC---ATIA 948
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
FG+GIDKP+VRFVIH L KS+E +YQ S
Sbjct: 949 FGMGIDKPDVRFVIHASLPKSVEGYYQES 977
Score = 40 (19.1 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 287 KPNVRFVIHHCLSKSMENFYQV 308
K VRFV H S+ M N V
Sbjct: 1082 KSIVRFVQEHSSSQGMRNIKHV 1103
>UNIPROTKB|F1PAG8 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
OMA:DPKIEEF EMBL:AAEX03006295 RefSeq:XP_540436.2
Ensembl:ENSCAFT00000007842 GeneID:483317 KEGG:cfa:483317
Uniprot:F1PAG8
Length = 989
Score = 322 (118.4 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 100/286 (34%), Positives = 140/286 (48%)
Query: 10 RVRSVLKSKFNLTDFR-PNQLAAINIALLK--KDAIIIMPTDYPWSDRVR-SVLKSKFNL 65
RVRS LK F F+ P Q +A +A+++ KD + MPT S + L +K +
Sbjct: 11 RVRSTLKKVFGFDSFKTPLQESA-TMAVVRGDKDVFVCMPTGAGKSLCYQLPALLAK-GI 68
Query: 66 TDFRPNQLAAINIA---LLKKDAIIIMPTGKLL--KKKKIC--LMTESSSLKLLYVSPEK 118
T +A I LL + KL +KK++ L E KLLY++PE
Sbjct: 69 TIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSAQEKKELLSDLEREKPQTKLLYITPE- 127
Query: 119 LAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGL 178
+A S SF L + L+ + +DE HC S WGHDFRPDY L L++ P + L
Sbjct: 128 MAASPSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGTLRSRLAHAPCIAL 187
Query: 179 TATATTKVMLDVQKMLQIEDCVV-IKAPFNRPNLFYEVRIK-----PAAQ-KD-CLDELA 230
TATAT +V DV L ++ V K P R NLFY+V+ K P +D CL L
Sbjct: 188 TATATLQVQEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLSDPYGNLRDFCLKALG 247
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN 276
+ + GI+Y + + CE L EL RG+ AYHA L+++
Sbjct: 248 QKADKGLLSGCGIVYCRTREACEQLATELSYRGVNAKAYHAGLKAS 293
Score = 102 (41.0 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSFRSRY 323
+I+FG+G+DK NVRFV H ++KSM +YQ S G GK S+ Y
Sbjct: 313 TISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLY 359
>UNIPROTKB|P54132 [details] [associations]
symbol:BLM "Bloom syndrome protein" species:9606 "Homo
sapiens" [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0005657
"replication fork" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5'
DNA helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IEA] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
differentiation" evidence=IEA] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0031297
"replication fork processing" evidence=IDA] [GO:0000781
"chromosome, telomeric region" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0016605 "PML body" evidence=IDA]
[GO:0048478 "replication fork protection" evidence=NAS] [GO:0000800
"lateral element" evidence=IDA] [GO:0006310 "DNA recombination"
evidence=NAS] [GO:0051259 "protein oligomerization" evidence=IDA]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IDA] [GO:0009378
"four-way junction helicase activity" evidence=IDA] [GO:0000405
"bubble DNA binding" evidence=IDA] [GO:0051880 "G-quadruplex DNA
binding" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0051782 "negative regulation of cell division"
evidence=IMP] [GO:0000085 "G2 phase of mitotic cell cycle"
evidence=NAS] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=NAS] [GO:0010165 "response to
X-ray" evidence=IDA] [GO:0016363 "nuclear matrix" evidence=IDA]
[GO:0031572 "G2 DNA damage checkpoint" evidence=NAS] [GO:0004386
"helicase activity" evidence=IDA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IMP] [GO:0006281 "DNA repair"
evidence=NAS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IMP;IDA] [GO:0036310 "annealing helicase activity"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IMP] [GO:0000729 "DNA double-strand break processing"
evidence=IDA] [GO:0000733 "DNA strand renaturation" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
GO:GO:0005737 Pathway_Interaction_DB:telomerasepathway
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0000085 Gene3D:1.10.10.10 InterPro:IPR011991
Reactome:REACT_111183 GO:GO:0001673 GO:GO:0003697 GO:GO:0004003
GO:GO:0000724 GO:GO:0016363 GO:GO:0046632 GO:GO:0010165
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000723 GO:GO:0031572 GO:GO:0005657 eggNOG:COG0514 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
HOGENOM:HOG000095239 HOVERGEN:HBG004850 OrthoDB:EOG4640B3
GO:GO:0000729 EMBL:U39817 EMBL:AY886902 EMBL:BC093622 EMBL:BC101567
EMBL:BC115030 EMBL:BC115032 IPI:IPI00004859 PIR:A57570
RefSeq:NP_000048.1 UniGene:Hs.725208 PDB:2KV2 PDB:2RRD PDBsum:2KV2
PDBsum:2RRD ProteinModelPortal:P54132 SMR:P54132 DIP:DIP-33322N
IntAct:P54132 MINT:MINT-131918 STRING:P54132 PhosphoSite:P54132
DMDM:1705486 PaxDb:P54132 PRIDE:P54132 Ensembl:ENST00000355112
GeneID:641 KEGG:hsa:641 UCSC:uc002bpr.3 CTD:641
GeneCards:GC15P091260 HGNC:HGNC:1058 HPA:HPA005689 MIM:210900
MIM:604610 neXtProt:NX_P54132 Orphanet:125 PharmGKB:PA25369
InParanoid:P54132 OMA:NANDQAI ChEMBL:CHEMBL1293237
EvolutionaryTrace:P54132 GenomeRNAi:641 NextBio:2600
PMAP-CutDB:P54132 ArrayExpress:P54132 Bgee:P54132 CleanEx:HS_BLM
Genevestigator:P54132 GermOnline:ENSG00000197299 GO:GO:0000800
GO:GO:0045120 GO:GO:0036310 GO:GO:0000405 GO:GO:0009378
GO:GO:0051880 GO:GO:0051782 GO:GO:0045910 GO:GO:0045950
GO:GO:0046641 GO:GO:0051098 GO:GO:0031297 GO:GO:0048478
Uniprot:P54132
Length = 1417
Score = 387 (141.3 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 102/287 (35%), Positives = 148/287 (51%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPW----SD 53
++P + + + KF L +FR NQL AIN ALL +D I+MPT Y S
Sbjct: 648 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 707
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINI--ALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
V V+ +L + +L +++I L D T L+ K + +KL
Sbjct: 708 GVTVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSK-----KDPIIKL 762
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+ FP
Sbjct: 763 LYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFP 822
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNL-FYEVRIKPAAQK-DCLDEL 229
VP++ LTATA +V D+ L+I V FNR NL +Y + KP DCL+ +
Sbjct: 823 SVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWI 882
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN 276
+ SGIIY S +EC+ + + L+ GL AYHA L +
Sbjct: 883 R----KHHPYDSGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDS 925
Score = 123 (48.4 bits), Expect = 0.00040, P = 0.00040
Identities = 30/89 (33%), Positives = 50/89 (56%)
Query: 221 AQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIA 280
++++C D +AD + R + + Y + + R+E++ + + +IA
Sbjct: 897 SRREC-DTMADTLQRD--GLAALAYHAGLSD--SARDEVQQKWINQDGCQVIC---ATIA 948
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
FG+GIDKP+VRFVIH L KS+E +YQ S
Sbjct: 949 FGMGIDKPDVRFVIHASLPKSVEGYYQES 977
Score = 40 (19.1 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 287 KPNVRFVIHHCLSKSMENFYQV 308
K VRFV H S+ M N V
Sbjct: 1082 KSIVRFVQEHSSSQGMRNIKHV 1103
>TIGR_CMR|GSU_0898 [details] [associations]
symbol:GSU_0898 "ATP-dependent DNA helicase RecQ"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_951954.1 ProteinModelPortal:Q74ER2 SMR:Q74ER2
GeneID:2687381 KEGG:gsu:GSU0898 PATRIC:22024565
ProtClustDB:CLSK828090 BioCyc:GSUL243231:GH27-885-MONOMER
Uniprot:Q74ER2
Length = 603
Score = 387 (141.3 bits), Expect = 1.7e-35, P = 1.7e-35
Identities = 104/318 (32%), Positives = 167/318 (52%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDFRP 70
+VL++ F FRP Q ++ D ++MPT S ++ S+++ +
Sbjct: 7 AVLRTVFGYRSFRPFQEEIVDRVARGGDTFVLMPTGGGKSLCYQIPSLVRPGVGIVISPL 66
Query: 71 NQLAAINIALLKKDAIIIMPTGKLL---KKKKICLMTESSSLKLLYVSPEKLAKSKSFMT 127
L + L+++ + L + +++ L LLYV+PE+L + +F+
Sbjct: 67 ISLMKDQVDALRENGVAAACYNSTLGERESRRVLARLHGGELDLLYVAPERLM-TDAFLE 125
Query: 128 KLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVM 187
+L+++ +A AIDE HC S WGHDFRP+Y L L+ +FP VP++ LTATA +
Sbjct: 126 RLREIP----IALFAIDEAHCVSQWGHDFRPEYVELGRLRGLFPTVPMIALTATADAQTR 181
Query: 188 LDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTT 247
D+ L + D + F+RPN+ Y V K QK +L + ++ R R ++GI+Y
Sbjct: 182 GDIVTRLGLRDAEMFVTGFDRPNIRYSVLEK---QKP-FRQLEEFLATRPR-EAGIVYCL 236
Query: 248 SIKECEDLREELRNRGLRVSAYHAKL----ESNV--------------SIAFGLGIDKPN 289
S K E++ E+LR G+ AYHA L S V ++AFG+GIDKPN
Sbjct: 237 SRKRVEEVAEKLRAAGVEAGAYHAGLADAERSRVQEAFLRDDIRVVVATVAFGMGIDKPN 296
Query: 290 VRFVIHHCLSKSMENFYQ 307
VRFV+H+ L K++E++YQ
Sbjct: 297 VRFVVHYDLPKNIESYYQ 314
>UNIPROTKB|E2RS76 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051880 "G-quadruplex DNA binding"
evidence=IEA] [GO:0051782 "negative regulation of cell division"
evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
[GO:0051098 "regulation of binding" evidence=IEA] [GO:0046641
"positive regulation of alpha-beta T cell proliferation"
evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
evidence=IEA] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045120
"pronucleus" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0016605 "PML body" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0010165 "response to
X-ray" evidence=IEA] [GO:0009378 "four-way junction helicase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005657 "replication
fork" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0002039
"p53 binding" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000405
"bubble DNA binding" evidence=IEA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0046632
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AAEX03002333 Ensembl:ENSCAFT00000019677 Uniprot:E2RS76
Length = 1407
Score = 393 (143.4 bits), Expect = 4.4e-35, P = 4.4e-35
Identities = 103/288 (35%), Positives = 151/288 (52%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPW----SD 53
++P + + + KF L +FR NQL AIN ALL +D I+MPT Y S
Sbjct: 637 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 696
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINI--ALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
V V+ +L + +L +++I L D T L+ K + +KL
Sbjct: 697 GVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSK-----KDPIIKL 751
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+ FP
Sbjct: 752 LYVTPEKVCASNRLLSTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFP 811
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNL-FYEVRIKPAAQK-DCLDEL 229
VP++ LTATA +V D+ L+I V FNR NL +Y + KP DCL+ +
Sbjct: 812 SVPVMALTATANPRVQKDILTQLKILQPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWI 871
Query: 230 ADLMSRRFR-NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN 276
R++ + SGIIY S +EC+ + + L+ GL AYHA L +
Sbjct: 872 -----RKYHPHDSGIIYCLSRRECDTMADTLQKDGLAALAYHAGLSDS 914
Score = 121 (47.7 bits), Expect = 0.00065, P = 0.00065
Identities = 29/89 (32%), Positives = 51/89 (57%)
Query: 221 AQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIA 280
++++C D +AD + + + + Y + + R+E++++ + +IA
Sbjct: 886 SRREC-DTMADTLQKD--GLAALAYHAGLSD--SARDEVQHKWINQDGCQVIC---ATIA 937
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
FG+GIDKP+VRFVIH L KS+E +YQ S
Sbjct: 938 FGMGIDKPDVRFVIHASLPKSVEGYYQES 966
>UNIPROTKB|J9PB86 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 CTD:641 OMA:NANDQAI
EMBL:AAEX03002333 RefSeq:XP_003434427.1 Ensembl:ENSCAFT00000042800
GeneID:100685609 KEGG:cfa:100685609 Uniprot:J9PB86
Length = 1420
Score = 393 (143.4 bits), Expect = 4.4e-35, P = 4.4e-35
Identities = 103/288 (35%), Positives = 151/288 (52%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPW----SD 53
++P + + + KF L +FR NQL AIN ALL +D I+MPT Y S
Sbjct: 650 SFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 709
Query: 54 RVRSVLKSKFNLTDFRPNQLAAINI--ALLKKDAIIIMPTGKLLKKKKICLMTESSSLKL 111
V V+ +L + +L +++I L D T L+ K + +KL
Sbjct: 710 GVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSK-----KDPIIKL 764
Query: 112 LYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
LYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+ FP
Sbjct: 765 LYVTPEKVCASNRLLSTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFP 824
Query: 172 DVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNL-FYEVRIKPAAQK-DCLDEL 229
VP++ LTATA +V D+ L+I V FNR NL +Y + KP DCL+ +
Sbjct: 825 SVPVMALTATANPRVQKDILTQLKILQPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWI 884
Query: 230 ADLMSRRFR-NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN 276
R++ + SGIIY S +EC+ + + L+ GL AYHA L +
Sbjct: 885 -----RKYHPHDSGIIYCLSRRECDTMADTLQKDGLAALAYHAGLSDS 927
Score = 121 (47.7 bits), Expect = 0.00066, P = 0.00066
Identities = 29/89 (32%), Positives = 51/89 (57%)
Query: 221 AQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIA 280
++++C D +AD + + + + Y + + R+E++++ + +IA
Sbjct: 899 SRREC-DTMADTLQKD--GLAALAYHAGLSD--SARDEVQHKWINQDGCQVIC---ATIA 950
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
FG+GIDKP+VRFVIH L KS+E +YQ S
Sbjct: 951 FGMGIDKPDVRFVIHASLPKSVEGYYQES 979
>UNIPROTKB|O94762 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0006259 "DNA metabolic process"
evidence=NAS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0032508 "DNA duplex unwinding" evidence=NAS;TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0031965 "nuclear membrane" evidence=IDA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
GO:GO:0006281 GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0016591 eggNOG:COG0514
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:AB006533 EMBL:AF135183
EMBL:AB042823 EMBL:AB042824 EMBL:AB042825 EMBL:BC016911
EMBL:AL136869 IPI:IPI00220819 IPI:IPI00220820 IPI:IPI01015246
RefSeq:NP_001003715.1 RefSeq:NP_001003716.1 RefSeq:NP_004250.4
UniGene:Hs.632229 ProteinModelPortal:O94762 SMR:O94762
DIP:DIP-32964N IntAct:O94762 MINT:MINT-1378331 STRING:O94762
PhosphoSite:O94762 PaxDb:O94762 PRIDE:O94762
Ensembl:ENST00000317905 Ensembl:ENST00000340830
Ensembl:ENST00000420326 Ensembl:ENST00000584999 GeneID:9400
KEGG:hsa:9400 UCSC:uc002joz.4 UCSC:uc002jpb.2 UCSC:uc010dgl.3
CTD:9400 GeneCards:GC17M073622 HGNC:HGNC:9950 HPA:HPA029970
HPA:HPA029971 MIM:603781 neXtProt:NX_O94762 PharmGKB:PA34317
HOGENOM:HOG000206773 HOVERGEN:HBG057065 InParanoid:O94762 KO:K10902
OrthoDB:EOG46WZ7X PhylomeDB:O94762 ChiTaRS:RECQL5 GenomeRNAi:9400
NextBio:35211 ArrayExpress:O94762 Bgee:O94762 CleanEx:HS_RECQL5
Genevestigator:O94762 GermOnline:ENSG00000108469 InterPro:IPR010716
Pfam:PF06959 ProDom:PD120154 Uniprot:O94762
Length = 991
Score = 314 (115.6 bits), Expect = 8.5e-35, Sum P(2) = 8.5e-35
Identities = 101/286 (35%), Positives = 140/286 (48%)
Query: 10 RVRSVLKSKFNLTDFR-PNQLAAINIALLK--KDAIIIMPTDYPWSDRVR-SVLKSKFNL 65
RVRS LK F F+ P Q +A +A++K KD + MPT S + L +K +
Sbjct: 15 RVRSTLKKVFGFDSFKTPLQESA-TMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAK-GI 72
Query: 66 TDFRPNQLAAINIA---LLKKDAIIIMPTGKLL--KKKKIC--LMTESSSLKLLYVSPEK 118
T +A I LL + KL ++K++ L E K+LY++PE
Sbjct: 73 TIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYITPE- 131
Query: 119 LAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGL 178
+A S SF L + L+ + +DE HC S WGHDFRPDY L L++ P + L
Sbjct: 132 MAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPCVAL 191
Query: 179 TATATTKVMLDVQKMLQIEDCVVI-KAPFNRPNLFYEVRIK-----PAAQ-KD-CLDELA 230
TATAT +V DV L ++ V I K P R NLFY+V+ K P KD CL L
Sbjct: 192 TATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLKALG 251
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN 276
+ GI+Y + + CE L EL RG+ AYHA L+++
Sbjct: 252 QEADKGLSG-CGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKAS 296
Score = 102 (41.0 bits), Expect = 8.5e-35, Sum P(2) = 8.5e-35
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSFRSRY 323
+I+FG+G+DK NVRFV H ++KSM +YQ S G GK S+ Y
Sbjct: 316 TISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLY 362
>UNIPROTKB|P15043 [details] [associations]
symbol:recQ species:83333 "Escherichia coli K-12"
[GO:0046914 "transition metal ion binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IMP]
[GO:0017116 "single-stranded DNA-dependent ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0017117 "single-stranded
DNA-dependent ATP-dependent DNA helicase complex" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IEA;IDA;IMP] [GO:0006281
"DNA repair" evidence=IEA;IGI] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA;IGI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0030894 "replisome" evidence=IDA] [GO:0009432
"SOS response" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0046914
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
EMBL:M87049 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 GO:GO:0030894
GO:GO:0017116 GO:GO:0017117 EMBL:M30198 HOGENOM:HOG000044388
KO:K03654 TIGRFAMs:TIGR01389 RefSeq:YP_026263.3 RefSeq:YP_491620.1
PDB:1OYW PDB:1OYY PDB:1WUD PDBsum:1OYW PDBsum:1OYY PDBsum:1WUD
ProteinModelPortal:P15043 SMR:P15043 DIP:DIP-10656N IntAct:P15043
MINT:MINT-1223947 EnsemblBacteria:EBESCT00000003276
EnsemblBacteria:EBESCT00000015928 GeneID:12930625 GeneID:948318
KEGG:ecj:Y75_p3356 KEGG:eco:b3822 PATRIC:32123145 EchoBASE:EB0826
EcoGene:EG10833 OMA:YCLSRAK ProtClustDB:PRK11057
BioCyc:EcoCyc:EG10833-MONOMER BioCyc:ECOL316407:JW5855-MONOMER
BioCyc:MetaCyc:EG10833-MONOMER EvolutionaryTrace:P15043
Genevestigator:P15043 Uniprot:P15043
Length = 609
Score = 380 (138.8 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 99/321 (30%), Positives = 169/321 (52%)
Query: 12 RSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDFR 69
+ VL+ F FRP Q I+ L +D +++MPT S ++ ++L + +
Sbjct: 14 KQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSP 73
Query: 70 PNQLAAINIALLKKDAIIIMPTGKL-LKKKKICLMT--ESSSLKLLYVSPEKLAKSKSFM 126
L + L+ + + +++++ +MT + ++LLY++PE+L +F+
Sbjct: 74 LISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLD-NFL 132
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186
L +A+DE HC S WGHDFRP+Y L L+ FP +P + LTATA
Sbjct: 133 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 187 MLDVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQSGII 244
D+ ++L + D ++ + F+RPN+ Y + + KP LD+L + + R +SGII
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKP------LDQLMRYVQEQ-RGKSGII 241
Query: 245 YTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGID 286
Y S + ED L+++G+ +AYHA LE+NV ++AFG+GI+
Sbjct: 242 YCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGIN 301
Query: 287 KPNVRFVIHHCLSKSMENFYQ 307
KPNVRFV+H + +++E++YQ
Sbjct: 302 KPNVRFVVHFDIPRNIESYYQ 322
>MGI|MGI:1328362 [details] [associations]
symbol:Blm "Bloom syndrome, RecQ helicase-like"
species:10090 "Mus musculus" [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000723
"telomere maintenance" evidence=IGI] [GO:0000729 "DNA double-strand
break processing" evidence=ISO] [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000800 "lateral element"
evidence=ISO] [GO:0001673 "male germ cell nucleus" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005657
"replication fork" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO;IDA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISO] [GO:0009378 "four-way junction
helicase activity" evidence=ISO] [GO:0010165 "response to X-ray"
evidence=ISO] [GO:0016363 "nuclear matrix" evidence=ISO]
[GO:0016605 "PML body" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031297
"replication fork processing" evidence=ISO] [GO:0036310 "annealing
helicase activity" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5'
DNA helicase activity" evidence=IDA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045910 "negative regulation of
DNA recombination" evidence=ISO] [GO:0045950 "negative regulation
of mitotic recombination" evidence=IMP] [GO:0046632 "alpha-beta T
cell differentiation" evidence=IMP] [GO:0046641 "positive
regulation of alpha-beta T cell proliferation" evidence=IMP]
[GO:0051098 "regulation of binding" evidence=IDA] [GO:0051259
"protein oligomerization" evidence=ISO] [GO:0051276 "chromosome
organization" evidence=IMP] [GO:0051782 "negative regulation of
cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 MGI:MGI:1328362 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0003677 GO:GO:0006260
Gene3D:1.10.10.10 InterPro:IPR011991 Reactome:REACT_120463
GO:GO:0006310 GO:GO:0001673 GO:GO:0046632 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
Reactome:REACT_27235 GO:GO:0005657 eggNOG:COG0514
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 HOGENOM:HOG000095239
HOVERGEN:HBG004850 OrthoDB:EOG4640B3 GO:GO:0000729 ChiTaRS:BLM
CTD:641 GO:GO:0045120 GO:GO:0045950 GO:GO:0046641 GO:GO:0051098
EMBL:Z98263 EMBL:AB008674 IPI:IPI00329943 RefSeq:NP_001035992.1
RefSeq:NP_031576.4 UniGene:Mm.12932 ProteinModelPortal:O88700
SMR:O88700 DIP:DIP-27643N STRING:O88700 PhosphoSite:O88700
PRIDE:O88700 DNASU:12144 Ensembl:ENSMUST00000081314 GeneID:12144
KEGG:mmu:12144 UCSC:uc009iaw.2 InParanoid:O88700 NextBio:280473
Bgee:O88700 CleanEx:MM_BLM Genevestigator:O88700
GermOnline:ENSMUSG00000030528 Uniprot:O88700
Length = 1416
Score = 388 (141.6 bits), Expect = 1.5e-34, P = 1.5e-34
Identities = 98/282 (34%), Positives = 143/282 (50%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
N+P + + + KF L +FR NQL AIN ALL +D I+MPT S ++ + +
Sbjct: 656 NFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSP 715
Query: 62 KFNLTDFRPNQLAAINIALLKK-DAIIIMPTGKLLKKKKICLMTESSS----LKLLYVSP 116
+ L + L D TG + + + S +KLLYV+P
Sbjct: 716 GVTIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTP 775
Query: 117 EKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPIL 176
EK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+ FP VP++
Sbjct: 776 EKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVM 835
Query: 177 GLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNL-FYEVRIKPAAQK-DCLDELADLMS 234
LTATA +V D+ L+I V FNR NL +Y + KP DCL+ +
Sbjct: 836 ALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIR---- 891
Query: 235 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN 276
+ SGIIY S +EC+ + + L+ GL AYHA L +
Sbjct: 892 KHHPYDSGIIYCLSRRECDTMADTLQREGLAALAYHAGLSDS 933
Score = 326 (119.8 bits), Expect = 6.1e-28, P = 6.1e-28
Identities = 78/209 (37%), Positives = 113/209 (54%)
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKT 168
+KLLYV+PEK+ S ++ L+ +Y+ LAR IDE HC S WGHDFR DY+ +++L+
Sbjct: 768 IKLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQ 827
Query: 169 MFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNL-FYEVRIKPAAQK-DCL 226
FP VP++ LTATA +V D+ L+I V FNR NL +Y + KP DCL
Sbjct: 828 KFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL 887
Query: 227 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGID 286
+ + + SGIIY S +EC+ + + L+ GL AYHA L + D
Sbjct: 888 EWIR----KHHPYDSGIIYCLSRRECDTMADTLQREGLAALAYHAGLSDSAR-------D 936
Query: 287 KPNVRFVIHHCLSKSMENFYQVSIAFGLG 315
+ V H +++ +IAFG+G
Sbjct: 937 E-----VQHKWINQDNCQVICATIAFGMG 960
Score = 128 (50.1 bits), Expect = 0.00011, P = 0.00011
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 221 AQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIA 280
++++C D +AD + R + + Y + + R+E++++ + +IA
Sbjct: 905 SRREC-DTMADTLQRE--GLAALAYHAGLSD--SARDEVQHKWINQDNCQVIC---ATIA 956
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
FG+GIDKP+VRFVIH L KSME +YQ S
Sbjct: 957 FGMGIDKPDVRFVIHASLPKSMEGYYQES 985
>TIGR_CMR|CBU_0472 [details] [associations]
symbol:CBU_0472 "ATP-dependent DNA helicase RecQ"
species:227377 "Coxiella burnetii RSA 493" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_819507.1 ProteinModelPortal:Q83E59 SMR:Q83E59
GeneID:1208356 KEGG:cbu:CBU_0472 PATRIC:17929635
ProtClustDB:CLSK914091 BioCyc:CBUR227377:GJ7S-469-MONOMER
Uniprot:Q83E59
Length = 601
Score = 376 (137.4 bits), Expect = 2.9e-34, P = 2.9e-34
Identities = 109/325 (33%), Positives = 166/325 (51%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTD------YPWSDRVRSVLKS 61
S + VL+ F +FRP Q IN + +D ++MPT Y VR +
Sbjct: 2 SIKALEVLRQTFGYENFRPLQEKIINSVIAGEDNFVLMPTGGGKSLCYQIPALVREGVGI 61
Query: 62 KFN-LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+ L +Q+ A+N A + T + +K ++ L LLY++PE+L
Sbjct: 62 VVSPLISLMQDQVQALNAN--GAAAALYNSTLTEAEARKNLARLHNNELDLLYIAPERLM 119
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
++SF+++L+++ LA +AIDE HC S WGHDFRP+Y L L+ FP VP + LTA
Sbjct: 120 -TESFLSRLREVK----LALVAIDEAHCVSQWGHDFRPEYLRLGELREYFPKVPFIALTA 174
Query: 181 TATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ 240
TA + D+ + L++ V A FNRPN+ Y + K QK ++L + + R +
Sbjct: 175 TADKQTRQDILQRLRLTKANVHIASFNRPNIRYTLLEK---QKS-YNQLVNFLKDR-KAD 229
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES---------------NV---SIAFG 282
GI+Y S E++ +L+ G YHA L + N+ +IAFG
Sbjct: 230 FGIVYCLSRNRVEEVAAKLQADGYSALPYHAGLPAAQRGKTQEAFQRDDVNIIVATIAFG 289
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+GIDKPNVRFV+H+ L K +E +YQ
Sbjct: 290 MGIDKPNVRFVVHYDLPKHIEGYYQ 314
>UNIPROTKB|Q9KVF0 [details] [associations]
symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
Uniprot:Q9KVF0
Length = 620
Score = 375 (137.1 bits), Expect = 4.5e-34, P = 4.5e-34
Identities = 104/319 (32%), Positives = 166/319 (52%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDFRPN 71
VL F FR Q I AL +D+++IMPT S ++ +++ L
Sbjct: 28 VLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLI 87
Query: 72 QLAAINIALLKKDAIIIMPTGKLLKKKKICLM---TESSSLKLLYVSPEKLAKSKSFMTK 128
L + LK + + L ++++ + + LKLLYVSPE++ ++ F+ +
Sbjct: 88 SLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAE-FIER 146
Query: 129 LQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVML 188
L + LA IA+DE HC S WGHDFRP+Y L LK FP+VP++ LTATA
Sbjct: 147 LSHLP----LAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNVPVMALTATADDATRH 202
Query: 189 DVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQSGIIYT 246
D+ + LQ+ + F+RPN+ Y + + KP +Q + L ++R Q GIIY
Sbjct: 203 DIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQV-----IRYLETQR--GQCGIIYC 255
Query: 247 TSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDKP 288
S K+ E L E+L +R ++YHA ++++ ++AFG+GI+KP
Sbjct: 256 GSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 315
Query: 289 NVRFVIHHCLSKSMENFYQ 307
NVRFV+H + +++E++YQ
Sbjct: 316 NVRFVVHFDIPRNIESYYQ 334
>TIGR_CMR|VC_0196 [details] [associations]
symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
Uniprot:Q9KVF0
Length = 620
Score = 375 (137.1 bits), Expect = 4.5e-34, P = 4.5e-34
Identities = 104/319 (32%), Positives = 166/319 (52%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDFRPN 71
VL F FR Q I AL +D+++IMPT S ++ +++ L
Sbjct: 28 VLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLI 87
Query: 72 QLAAINIALLKKDAIIIMPTGKLLKKKKICLM---TESSSLKLLYVSPEKLAKSKSFMTK 128
L + LK + + L ++++ + + LKLLYVSPE++ ++ F+ +
Sbjct: 88 SLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAE-FIER 146
Query: 129 LQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVML 188
L + LA IA+DE HC S WGHDFRP+Y L LK FP+VP++ LTATA
Sbjct: 147 LSHLP----LAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNVPVMALTATADDATRH 202
Query: 189 DVQKMLQIEDCVVIKAPFNRPNLFYEV--RIKPAAQKDCLDELADLMSRRFRNQSGIIYT 246
D+ + LQ+ + F+RPN+ Y + + KP +Q + L ++R Q GIIY
Sbjct: 203 DIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQV-----IRYLETQR--GQCGIIYC 255
Query: 247 TSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDKP 288
S K+ E L E+L +R ++YHA ++++ ++AFG+GI+KP
Sbjct: 256 GSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 315
Query: 289 NVRFVIHHCLSKSMENFYQ 307
NVRFV+H + +++E++YQ
Sbjct: 316 NVRFVVHFDIPRNIESYYQ 334
>GENEDB_PFALCIPARUM|PF14_0278 [details] [associations]
symbol:PF14_0278 "ATP-dependent DNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 EMBL:AE014187 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K01509 HSSP:P15043
RefSeq:XP_001348452.1 ProteinModelPortal:Q8ILG5
EnsemblProtists:PF14_0278:mRNA GeneID:811860 KEGG:pfa:PF14_0278
EuPathDB:PlasmoDB:PF3D7_1429900 ProtClustDB:CLSZ2501048
Uniprot:Q8ILG5
Length = 1440
Score = 312 (114.9 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 92/279 (32%), Positives = 138/279 (49%)
Query: 20 NLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS-----DRVRSVLKSKFNLTDFRPNQLA 74
NL DF Q+ A++ KKD+ I+M T S + V + KF + L
Sbjct: 51 NLKDF---QVEAVHATFHKKDSFIVMATGMGKSLCYQIPSLMDVCRKKFTIVISPLISLM 107
Query: 75 AINIALLKKDAI--IIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKM 132
+ L + I + + +G+ + KI + K++Y SPE +K L+
Sbjct: 108 KDQVDNLNRKRISSVFLGSGQKMNNNKILNEIKHGIYKIVYCSPEYALNNKDVFILLKNR 167
Query: 133 YKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQK 192
+ IAIDEVHC S WGHDFRP Y+ L+ L+ + ++PI+ LTAT T V D+ K
Sbjct: 168 -----ILLIAIDEVHCMSEWGHDFRPSYRKLNELRIILKEIPIMCLTATCTKNVQSDILK 222
Query: 193 MLQ--IEDCVVIKAPFNRPNLFYEVRIKPAAQ---KDCLD-ELADLMSR--RFRNQSGI- 243
L +++C++ ++ N+ NLFY VR K KD LD L + + R +F + S I
Sbjct: 223 NLNFDLQNCLIKRSSVNKKNLFYSVREKTDIYHDLKDILDIPLKESIERTKKFIDNSKIC 282
Query: 244 ------IYTTSIKECEDLREELRNRGLRVSAYHAKLESN 276
IY S KECE + L+ +GL V YHA L ++
Sbjct: 283 SYNSTLIYVNSKKECESVYSFLKEKGLLVLMYHADLTND 321
Score = 89 (36.4 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 14/30 (46%), Positives = 25/30 (83%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GIDKP++R +IH+ ++S+E + Q
Sbjct: 341 TVAFGMGIDKPDIRRIIHYGFARSLEAYVQ 370
>UNIPROTKB|Q8ILG5 [details] [associations]
symbol:PF14_0278 "ATP-dependent DNA helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 EMBL:AE014187 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K01509 HSSP:P15043
RefSeq:XP_001348452.1 ProteinModelPortal:Q8ILG5
EnsemblProtists:PF14_0278:mRNA GeneID:811860 KEGG:pfa:PF14_0278
EuPathDB:PlasmoDB:PF3D7_1429900 ProtClustDB:CLSZ2501048
Uniprot:Q8ILG5
Length = 1440
Score = 312 (114.9 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 92/279 (32%), Positives = 138/279 (49%)
Query: 20 NLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS-----DRVRSVLKSKFNLTDFRPNQLA 74
NL DF Q+ A++ KKD+ I+M T S + V + KF + L
Sbjct: 51 NLKDF---QVEAVHATFHKKDSFIVMATGMGKSLCYQIPSLMDVCRKKFTIVISPLISLM 107
Query: 75 AINIALLKKDAI--IIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKM 132
+ L + I + + +G+ + KI + K++Y SPE +K L+
Sbjct: 108 KDQVDNLNRKRISSVFLGSGQKMNNNKILNEIKHGIYKIVYCSPEYALNNKDVFILLKNR 167
Query: 133 YKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQK 192
+ IAIDEVHC S WGHDFRP Y+ L+ L+ + ++PI+ LTAT T V D+ K
Sbjct: 168 -----ILLIAIDEVHCMSEWGHDFRPSYRKLNELRIILKEIPIMCLTATCTKNVQSDILK 222
Query: 193 MLQ--IEDCVVIKAPFNRPNLFYEVRIKPAAQ---KDCLD-ELADLMSR--RFRNQSGI- 243
L +++C++ ++ N+ NLFY VR K KD LD L + + R +F + S I
Sbjct: 223 NLNFDLQNCLIKRSSVNKKNLFYSVREKTDIYHDLKDILDIPLKESIERTKKFIDNSKIC 282
Query: 244 ------IYTTSIKECEDLREELRNRGLRVSAYHAKLESN 276
IY S KECE + L+ +GL V YHA L ++
Sbjct: 283 SYNSTLIYVNSKKECESVYSFLKEKGLLVLMYHADLTND 321
Score = 89 (36.4 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 14/30 (46%), Positives = 25/30 (83%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GIDKP++R +IH+ ++S+E + Q
Sbjct: 341 TVAFGMGIDKPDIRRIIHYGFARSLEAYVQ 370
>WB|WBGene00001865 [details] [associations]
symbol:him-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0051307 "meiotic chromosome separation" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IGI] [GO:0007059
"chromosome segregation" evidence=IGI] [GO:0007126 "meiosis"
evidence=IGI] [GO:0007067 "mitosis" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IMP] [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0019899 "enzyme binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0005634 GO:GO:0008340 GO:GO:0000077 GO:GO:0043066
GO:GO:0007067 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010165 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0007131 EMBL:AY095296 EMBL:Z83123 PIR:T24415
RefSeq:NP_502390.2 UniGene:Cel.5990 ProteinModelPortal:O18017
SMR:O18017 IntAct:O18017 MINT:MINT-227232 STRING:O18017
PaxDb:O18017 EnsemblMetazoa:T04A11.6 GeneID:178201
KEGG:cel:CELE_T04A11.6 UCSC:T04A11.6.1 CTD:178201 WormBase:T04A11.6
eggNOG:COG0514 GeneTree:ENSGT00550000074520 HOGENOM:HOG000022124
InParanoid:O18017 KO:K10901 OMA:PEDANDS NextBio:900142
GO:GO:0051307 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
Uniprot:O18017
Length = 988
Score = 357 (130.7 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 94/278 (33%), Positives = 144/278 (51%)
Query: 15 LKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS----------DRVRSVLKSKFN 64
LKSKF FR Q I L+ D ++MPT S V V+ +
Sbjct: 239 LKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILPGVTVVVSPLRS 298
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKS 124
L + + ++ + I A + P + + + L + + S+KLLYV+PEK++ S
Sbjct: 299 LIEDQKMKMKELGIGCEALTADLGAPAQEKIYAE---LGSGNPSIKLLYVTPEKISASGR 355
Query: 125 FMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF--PDVPILGLTATA 182
+ +++ G LAR IDE HC S WGHDFRPDY LS L+ + P VPI+ LTATA
Sbjct: 356 LNSVFFDLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALTATA 415
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSG 242
T K++ D + L++++ + + F R NL Y++ I AA+ L + + M + + +SG
Sbjct: 416 TPKIVTDARDHLKMQNSKLFISSFVRDNLKYDL-IPKAARS--LINVVEKMKQLYPGKSG 472
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIA 280
I+Y S KECE ++ L GL YHA L N+ ++
Sbjct: 473 IVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDNLRVS 510
Score = 177 (67.4 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 53/154 (34%), Positives = 85/154 (55%)
Query: 171 PDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK--DCLDE 228
P VPI+ LTATAT K++ D + L++++ + + F R NL Y++ I AA+ + +++
Sbjct: 404 PPVPIIALTATATPKIVTDARDHLKMQNSKLFISSFVRDNLKYDL-IPKAARSLINVVEK 462
Query: 229 LADL----------MSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN-- 276
+ L +SR+ ++ T + E L N LRVS + + +
Sbjct: 463 MKQLYPGKSGIVYCLSRKECETVQMMLTKAGLSAEVYHAGL-NDNLRVSVQRSWIANKFD 521
Query: 277 ---VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GIDKP+VRFVIH+ L KS+E +YQ
Sbjct: 522 VICATIAFGMGIDKPDVRFVIHYSLPKSIEGYYQ 555
>DICTYBASE|DDB_G0268512 [details] [associations]
symbol:wrn "Werner syndrome protein" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 SMART:SM00956 dictyBase:DDB_G0268512 GO:GO:0005524
GenomeReviews:CM000150_GR GO:GO:0006260 GO:GO:0006281
EMBL:AAFI02000003 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
RefSeq:XP_001732947.1 ProteinModelPortal:B0G0Y4
EnsemblProtists:DDB0238429 GeneID:8616084 KEGG:ddi:DDB_G0268512
OMA:FLFNKTE Uniprot:B0G0Y4
Length = 1136
Score = 280 (103.6 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
Identities = 86/282 (30%), Positives = 135/282 (47%)
Query: 4 NYPWSD-RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSK 62
NY D ++ +LK F L FRPNQL I + D+ + M T S +
Sbjct: 281 NYNDEDNKIIEILKKYFGLHSFRPNQLEVIKHTISGGDSFLSMATGTGKS-LCFQIPPLY 339
Query: 63 FNLTDFRPNQLAA-INIALLKKDAIIIMPT---GKLLKKKKICLMTESSSLKLLYVSPEK 118
N T + L + I LK ++ I T + K + L+Y++PE+
Sbjct: 340 LNKTAIVVSPLVSLITDQTLKLKSLGIKVTKLSSDIKSSSKEYELIFKGYYNLVYITPER 399
Query: 119 LAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGL 178
+ + +L + K CL AIDE HC S WGH FR Y+ L L+ FP VPI+ +
Sbjct: 400 IINEYQSIGELVRNEKI-CL--FAIDEAHCISQWGHSFRESYRKLQELRNQFPTVPIMAV 456
Query: 179 TATATTKVMLDVQKMLQIED--CVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM--S 234
TATAT + D+ L I + C + K+ NRPN++Y+V IK + + D++ +
Sbjct: 457 TATATKSIESDIINNLGIGNGNCKMFKSSKNRPNIYYKVIIKDKLVSNDFKMILDILLET 516
Query: 235 RR---FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL 273
R+ + S IIY T+I+ +L L + ++ + YH++L
Sbjct: 517 RKTIGVVSNSTIIYCTTIQIANELNRFLCDNKIQSNVYHSQL 558
Score = 99 (39.9 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
Identities = 25/56 (44%), Positives = 39/56 (69%)
Query: 255 LREELRNRGLRVSAYHAKLESNVS-IAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
L ++ R+ L+ ++ K E V+ IAFG+GIDK +VR +I++ SKS+E+FYQ S
Sbjct: 558 LGDKQRDETLKNFLFN-KTEVIVATIAFGMGIDKHDVRLIINYGASKSVEDFYQES 612
>TAIR|locus:2180255 [details] [associations]
symbol:RECQSIM "RECQ helicase SIM" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006281 "DNA repair" evidence=IDA] [GO:0043138 "3'-5' DNA
helicase activity" evidence=IDA] [GO:0006270 "DNA replication
initiation" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR009060 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:AC007478
InterPro:IPR015940 PROSITE:PS50030 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 eggNOG:COG0514
TIGRFAMs:TIGR00614 GO:GO:0008026 GO:GO:0043138 EMBL:AC069556
HSSP:P15043 EMBL:AJ404475 EMBL:AY059754 EMBL:AY133823
IPI:IPI00537732 RefSeq:NP_568499.1 UniGene:At.10179
ProteinModelPortal:Q9FT69 SMR:Q9FT69 IntAct:Q9FT69
EnsemblPlants:AT5G27680.1 GeneID:832830 KEGG:ath:AT5G27680
TAIR:At5g27680 HOGENOM:HOG000084012 InParanoid:Q9FT69 KO:K10900
OMA:CRAKILV PhylomeDB:Q9FT69 ProtClustDB:CLSN2689878
Genevestigator:Q9FT69 Uniprot:Q9FT69
Length = 858
Score = 251 (93.4 bits), Expect = 2.8e-30, Sum P(3) = 2.8e-30
Identities = 82/271 (30%), Positives = 136/271 (50%)
Query: 7 WSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN 64
W RV S+L+++F ++ R Q A++ + KD +++ T S ++ ++L K
Sbjct: 152 WEKRVNSILRNRFGISSLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQIPALLTGKVV 211
Query: 65 LTDFRPNQLAAINIALLK----KDAIIIMPTGKLLKKKKICLMTESSS--LKLLYVSPEK 118
+ P ++ ++ LK K + + +G+L C+ ++ +++YV PE
Sbjct: 212 VV-ISP-LISLMHDQCLKLSRHKVSACFLGSGQLDN----CIEEKAMQGMYQIIYVCPET 265
Query: 119 LAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP------- 171
+ + + LQK+ K +A AIDE HC S WGHDFRP Y+ LS+L+ F
Sbjct: 266 VVR---LIKPLQKLAKTHGIALFAIDEAHCVSKWGHDFRPHYRKLSVLRENFCASNLEFL 322
Query: 172 --DVPILGLTATATTKVMLDVQKMLQI-EDCVVIKAPFNRPNLFYEV---RIKPAAQ--K 223
DVPI+ LTATAT V D+ + L + ++ ++ F RPNL + V R K A+ K
Sbjct: 323 EYDVPIMALTATATVNVQEDILESLHLSKETKIVLTSFFRPNLQFSVKHSRTKFASSYAK 382
Query: 224 DCLDELADLMSRRFRNQSGIIYTTSIKECED 254
D L DL S + +N +G +E E+
Sbjct: 383 D-FQNLVDLYSEK-KNSTGKKLAVISRESEE 411
Score = 91 (37.1 bits), Expect = 2.8e-30, Sum P(3) = 2.8e-30
Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 272 KLESNVS-IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
KL+ V+ IAFG+GIDK NVR +IH+ +S+E +YQ
Sbjct: 547 KLQVVVATIAFGMGIDKKNVRKIIHYGWLQSLEAYYQ 583
Score = 51 (23.0 bits), Expect = 2.8e-30, Sum P(3) = 2.8e-30
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKL 273
IIY + KE ++ + L GL+ +AY+A L
Sbjct: 501 IIYVPTRKESVNIAKYLCGVGLKAAAYNASL 531
Score = 45 (20.9 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIA----FGLGIDKPN 289
+ T E D+REE ++A+H +++++ A +GLG K N
Sbjct: 662 VCTEGPPELVDVREEANLLFQVITAFHLQVDNDSEHAPYEDYGLGNSKQN 711
>TIGR_CMR|SO_4241 [details] [associations]
symbol:SO_4241 "ATP-dependent DNA helicase RecQ"
species:211586 "Shewanella oneidensis MR-1" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_719768.1 ProteinModelPortal:Q8E9M8 SMR:Q8E9M8
GeneID:1171845 KEGG:son:SO_4241 PATRIC:23528122
ProtClustDB:CLSK907564 Uniprot:Q8E9M8
Length = 607
Score = 338 (124.0 bits), Expect = 5.0e-30, P = 5.0e-30
Identities = 105/330 (31%), Positives = 163/330 (49%)
Query: 6 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNL 65
P S+R+ V F DFR Q I +D ++IMPT S + +
Sbjct: 12 PLSERLAQV----FGYRDFRDGQREVIERVCRGEDCLVIMPTGGGKSLCYQLPALMMHGI 67
Query: 66 TDFRPNQLAAINIALLKKDAIIIMPTG------KLLKKKKICL----MTESSSLKLLYVS 115
T + + I+L+K ++ TG + +++ L LKLLYVS
Sbjct: 68 TI-----VVSPLISLMKDQVDSLLQTGVNAAYLNSSQPRELSLEVLRQLHLGELKLLYVS 122
Query: 116 PEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI 175
PE+L + F+ ++Q + L+ AIDE HC S WGHDFRP+Y L LK +FP VP+
Sbjct: 123 PERLLTA-DFIERMQSLP----LSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPHVPM 177
Query: 176 LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR 235
+ LTATA ++ + L I ++ + F+RPN+ Y V A + + ++L + +
Sbjct: 178 MALTATADQATRQNICERLGINPFKLLSS-FDRPNIRYTV----AEKLNAANQLRQFLLQ 232
Query: 236 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK-------------LESNVSI--- 279
+ SGIIY +S + +++ E L +G AYHA L+ + I
Sbjct: 233 Q-NGSSGIIYCSSRRRVDEVAERLTLQGFHAKAYHAGMTPEERGEVQDSFLKDQIDIVVA 291
Query: 280 --AFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
AFG+GI+K NVRFV+H+ + KS+E +YQ
Sbjct: 292 TVAFGMGINKSNVRFVVHYDIPKSIEAYYQ 321
>TIGR_CMR|BA_2818 [details] [associations]
symbol:BA_2818 "ATP-dependent DNA helicase RecQ"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0009378 "four-way junction helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614
GO:GO:0009432 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK RefSeq:NP_845165.1
RefSeq:YP_019461.1 RefSeq:YP_028886.1 ProteinModelPortal:Q81PI6
DNASU:1085972 EnsemblBacteria:EBBACT00000011651
EnsemblBacteria:EBBACT00000017455 EnsemblBacteria:EBBACT00000023670
GeneID:1085972 GeneID:2814571 GeneID:2847794 KEGG:ban:BA_2818
KEGG:bar:GBAA_2818 KEGG:bat:BAS2627 ProtClustDB:CLSK916814
BioCyc:BANT260799:GJAJ-2691-MONOMER
BioCyc:BANT261594:GJ7F-2786-MONOMER Uniprot:Q81PI6
Length = 705
Score = 337 (123.7 bits), Expect = 1.1e-29, P = 1.1e-29
Identities = 109/322 (33%), Positives = 158/322 (49%)
Query: 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSD--RVRSVLKSKFNLTD 67
+ + +L S F + FR Q I L KD + IMPT S ++ +++ L
Sbjct: 4 KAQELLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVI 63
Query: 68 FRPNQLAAINIALLKKDAI---IIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKS 124
L + L ++ I I + + + + + + KL YV+PE+L S
Sbjct: 64 SPLISLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLFYVAPERL-DSME 122
Query: 125 FMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP-ILGLTATAT 183
F+ +L M + IAIDE HC S WGHDFRP Y ++ + P+ P +L LTATAT
Sbjct: 123 FVDQLIDMK----IPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEEPLVLALTATAT 178
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGI 243
+V D+ L I I F R NL + V IK +D LAD + R+ + +SGI
Sbjct: 179 PQVRDDICNTLGINQENTIMTTFERENLSFSV-IKG---QDRNAYLADYI-RQNQKESGI 233
Query: 244 IYTTSIKECEDLREELRNRGLRVSAYHAK-------------LESNVSI-----AFGLGI 285
IY + K + L E+L G+ VS YHA L VS+ AFG+GI
Sbjct: 234 IYAATRKVVDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGI 293
Query: 286 DKPNVRFVIHHCLSKSMENFYQ 307
DK N+R+VIH+ L K+ME++YQ
Sbjct: 294 DKSNIRYVIHYQLPKNMESYYQ 315
>UNIPROTKB|F1NT69 [details] [associations]
symbol:F1NT69 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00819481
ProteinModelPortal:F1NT69 Ensembl:ENSGALT00000038980
ArrayExpress:F1NT69 Uniprot:F1NT69
Length = 451
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 96/285 (33%), Positives = 140/285 (49%)
Query: 10 RVRSVLKSKFNLTDFRPNQLAAINIALLK--KDAIIIMPTDYPWS--DRVRSVLKSKFNL 65
RVR L F F+ + + +A+++ KD + MPT S ++ +VL +
Sbjct: 20 RVRKTLGKVFGFESFKTSLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITI 79
Query: 66 TDFRPNQLAAI-----NIALLKKDAIIIMPTGKLLKKKKIC--LMTESSSLKLLYVSPEK 118
P +A I ++ LK A + +KK I L +E +KLLY++PE
Sbjct: 80 V-ISP-LIALIQDQVDHLLALKIKACSLNSKLSAQEKKTILADLASEKPQIKLLYITPE- 136
Query: 119 LAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGL 178
+A + SF L + L+ + IDE HC S WGHDFRPDY L L+T P+ P + L
Sbjct: 137 MAAASSFQPTLNSLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLGTLRTRIPNTPCVAL 196
Query: 179 TATATTKVMLDVQKMLQIED-CVVIKAPFNRPNLFYEVRIK-----PAAQ-KD-CLDELA 230
TATAT +V D+ L+++ K P R NLFY+V+ K P A KD CL L
Sbjct: 197 TATATKQVQDDIVTALKLKQPLATFKTPCFRSNLFYDVQFKELLTDPYANLKDFCLKALE 256
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES 275
+ + GI+Y C+ L EL RG++ AYHA L++
Sbjct: 257 VKNTTGVYSGCGIVYCRMRDVCDQLAIELSYRGVKAKAYHAGLKA 301
>FB|FBgn0027375 [details] [associations]
symbol:RecQ5 "homolog of RecQ" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=IDA] [GO:0003924
"GTPase activity" evidence=IDA] [GO:0005525 "GTP binding"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IDA;IMP] [GO:0045930 "negative regulation of
mitotic cell cycle" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=IDA] [GO:0045002 "double-strand break repair via
single-strand annealing" evidence=IMP] [GO:0090007 "regulation of
mitotic anaphase" evidence=IDA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005525 GO:GO:0005524
GO:GO:0005634 GO:GO:0003924 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045002 GO:GO:0045930
TIGRFAMs:TIGR00614 GO:GO:0090007 GO:GO:0017116 HSSP:P15043
FlyBase:FBgn0027375 EMBL:AB031086 ProteinModelPortal:Q9U5E0
PRIDE:Q9U5E0 InParanoid:Q9U5E0 ArrayExpress:Q9U5E0 Bgee:Q9U5E0
Uniprot:Q9U5E0
Length = 1058
Score = 279 (103.3 bits), Expect = 2.7e-29, Sum P(2) = 2.7e-29
Identities = 92/289 (31%), Positives = 144/289 (49%)
Query: 11 VRSVLKSKFNLTDFRPN-QLAAINIALLKK-DAIIIMPTDYPWSDRVRSV-LKSKFNLTD 67
V LK F + F+ + Q A+ A+ KK D + MPT S + L S+ +T
Sbjct: 7 VHEALKKHFGHSKFKSDLQEKAVKCAVKKKQDVYVSMPTGSGKSLCFQLPGLMSENQITI 66
Query: 68 -FRPNQLAAI-----NIALLKKDAIIIMPTGKLLKKKKICLMTES--SSLKLLYVSPEKL 119
F P LA I ++ LK A + ++ ++ + ++ ++LK LY++PE+
Sbjct: 67 VFSP-LLALIKDQIDHLTKLKVPADSLNSKMSTKERDRVIMDLKAVRTNLKFLYITPEQA 125
Query: 120 AKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLT 179
A +K F LQ ++K LA A+DE HC S WGHDFRPDY L L++ + DV L LT
Sbjct: 126 A-TKFFQDLLQTLHKHNKLAYFAVDEAHCVSQWGHDFRPDYLKLGELRSKYSDVIWLALT 184
Query: 180 ATATTKVMLDVQKMLQIEDCVV-IKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS---- 234
ATA+ +V D+ K L++ V P R NLFY++ K + + D LAD
Sbjct: 185 ATASREVKEDIYKQLRLHQPVAQFSTPSFRKNLFYDIVYKNSIEDD-FQHLADFARHCLG 243
Query: 235 --RRFRNQS------GIIYTTSIKECEDLREELRNRGLRVSAYHAKLES 275
+ F++ GI+Y + + E + + +G+ AYHA L++
Sbjct: 244 NPKEFKDTPKPQRGCGIVYCRTRDQVERMAIGVTKQGIGAVAYHAGLKT 292
Score = 86 (35.3 bits), Expect = 2.7e-29, Sum P(2) = 2.7e-29
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
+FG+G+DKP+VRFVIH + +++ +YQ S
Sbjct: 315 SFGMGVDKPSVRFVIHWDVPQNVAAYYQES 344
>RGD|1310823 [details] [associations]
symbol:Recql5 "RecQ protein-like 5" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IEA;ISO] [GO:0031965 "nuclear membrane"
evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 RGD:1310823
GO:GO:0005524 GO:GO:0005730 GO:GO:0031965 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 EMBL:CH473948
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 OrthoDB:EOG46WZ7X InterPro:IPR010716
Pfam:PF06959 ProDom:PD120154 OMA:DPKIEEF IPI:IPI00364336
RefSeq:NP_001099323.1 UniGene:Rn.198916 Ensembl:ENSRNOT00000007246
GeneID:287834 KEGG:rno:287834 NextBio:627111 Uniprot:D4ACP5
Length = 973
Score = 325 (119.5 bits), Expect = 4.3e-28, P = 4.3e-28
Identities = 98/287 (34%), Positives = 143/287 (49%)
Query: 10 RVRSVLKSKFNLTDFR-PNQLAAINIALLK--KDAIIIMPTDYPWS--DRVRSVLKSKFN 64
RVRS LK F F+ P Q +AI +A++K KD + MPT S ++ +VL
Sbjct: 15 RVRSTLKKVFGFDSFKTPLQESAI-MAVVKGDKDVFVCMPTGAGKSLCYQLPAVLAKGIT 73
Query: 65 LTDFRPNQLAAI-----NIALLKKDAIIIMPTGKLLKKKKIC--LMTESSSLKLLYVSPE 117
+ P +A I ++ LK + + ++K++ L + KLLY++PE
Sbjct: 74 IV-VSP-LIALIQDQVDHLLALKVQVSSLNSKLSVQERKELLSDLERDKPRTKLLYITPE 131
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
+A S SF L + L+ + +DE HC S WGHDFRPDY L L++ P +
Sbjct: 132 -MAASASFQPTLNSLLSRNLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLAHAPCVA 190
Query: 178 LTATATTKVMLDVQKMLQIEDCVV-IKAPFNRPNLFYEVRIK---PAAQ---KD-CLDEL 229
LTATAT +V DV L ++ V K P R NLFY+V+ K P +D CL L
Sbjct: 191 LTATATPQVQEDVFAALHLKQPVASFKTPCFRANLFYDVQFKELIPDVYGNLRDFCLKAL 250
Query: 230 ADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN 276
+ GI+Y + + CE L EL +RG+ AYHA L+++
Sbjct: 251 GQKADNGSSSGCGIVYCRTREACEQLAIELSSRGVNAKAYHAGLKAS 297
Score = 104 (41.7 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 35/103 (33%), Positives = 54/103 (52%)
Query: 223 KDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVS-IAF 281
++ ++LA +S R N Y +K E R +++N + K+ V+ I+F
Sbjct: 270 REACEQLAIELSSRGVNAKA--YHAGLKASE--RTQVQNEWME-----EKVPVIVATISF 320
Query: 282 GLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSFRSRY 323
G+G+DK NVRFV H ++KSM +YQ S G GK S+ Y
Sbjct: 321 GMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLY 363
Score = 75 (31.5 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 27/75 (36%), Positives = 37/75 (49%)
Query: 47 TDYPWSDRVRSVLKSKFNLTDFR-PNQLAAINIALLK--KDAIIIMPTGKLLKKKKICLM 103
T + RVRS LK F F+ P Q +AI +A++K KD + MPTG K +C
Sbjct: 8 TPFDRERRVRSTLKKVFGFDSFKTPLQESAI-MAVVKGDKDVFVCMPTGA---GKSLCYQ 63
Query: 104 TESSSLK--LLYVSP 116
+ K + VSP
Sbjct: 64 LPAVLAKGITIVVSP 78
>UNIPROTKB|F1NWK5 [details] [associations]
symbol:F1NWK5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
OMA:DPKIEEF EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00812208
Ensembl:ENSGALT00000003814 ArrayExpress:F1NWK5 Uniprot:F1NWK5
Length = 1023
Score = 325 (119.5 bits), Expect = 4.7e-28, P = 4.7e-28
Identities = 96/285 (33%), Positives = 140/285 (49%)
Query: 10 RVRSVLKSKFNLTDFRPNQLAAINIALLK--KDAIIIMPTDYPWS--DRVRSVLKSKFNL 65
RVR L F F+ + + +A+++ KD + MPT S ++ +VL +
Sbjct: 20 RVRKTLGKVFGFESFKTSLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITI 79
Query: 66 TDFRPNQLAAI-----NIALLKKDAIIIMPTGKLLKKKKIC--LMTESSSLKLLYVSPEK 118
P +A I ++ LK A + +KK I L +E +KLLY++PE
Sbjct: 80 V-ISP-LIALIQDQVDHLLALKIKACSLNSKLSAQEKKTILADLASEKPQIKLLYITPE- 136
Query: 119 LAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGL 178
+A + SF L + L+ + IDE HC S WGHDFRPDY L L+T P+ P + L
Sbjct: 137 MAAASSFQPTLNSLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLGTLRTRIPNTPCVAL 196
Query: 179 TATATTKVMLDVQKMLQIED-CVVIKAPFNRPNLFYEVRIK-----PAAQ-KD-CLDELA 230
TATAT +V D+ L+++ K P R NLFY+V+ K P A KD CL L
Sbjct: 197 TATATKQVQDDIVTALKLKQPLATFKTPCFRSNLFYDVQFKELLTDPYANLKDFCLKALE 256
Query: 231 DLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES 275
+ + GI+Y C+ L EL RG++ AYHA L++
Sbjct: 257 VKNTTGVYSGCGIVYCRMRDVCDQLAIELSYRGVKAKAYHAGLKA 301
>UNIPROTKB|F1RMJ3 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR012532 Pfam:PF00270 Pfam:PF08072
PROSITE:PS00690 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:CT757491 Ensembl:ENSSSCT00000002034
Uniprot:F1RMJ3
Length = 541
Score = 311 (114.5 bits), Expect = 2.9e-27, P = 2.9e-27
Identities = 73/203 (35%), Positives = 112/203 (55%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
N+P + + + KF L +FR NQL AIN ALL +D I+MPT S ++ + + S
Sbjct: 337 NFPHTKEMMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSS 396
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMP----TGKLLKKKKICLMTESSS----LKLLY 113
+ P L ++ + ++K + +P TG + + + S +KLLY
Sbjct: 397 GVTIV-ISP--LRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLY 453
Query: 114 VSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDV 173
V+PEK+ S ++ L+ +Y LAR IDE HC S WGHDFRPDY+ +++L+ FP V
Sbjct: 454 VTPEKVCASNRLISTLENLYNRKLLARFVIDEAHCVSQWGHDFRPDYKRMNMLRQKFPSV 513
Query: 174 PILGLTATATTKVMLDVQKMLQI 196
P++ LTATA +V D+ L+I
Sbjct: 514 PVMALTATANPRVQKDILTQLKI 536
>UNIPROTKB|O34748 [details] [associations]
symbol:recQ "Probable ATP-dependent DNA helicase RecQ"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0043590 "bacterial nucleoid" evidence=IDA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005737 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 EMBL:AF027868 PIR:F69901 RefSeq:NP_389803.1
ProteinModelPortal:O34748 SMR:O34748
EnsemblBacteria:EBBACT00000001699 GeneID:939671 KEGG:bsu:BSU19220
PATRIC:18975693 GenoList:BSU19220 KO:K03654 OMA:HAAYINS
ProtClustDB:CLSK887416 BioCyc:BSUB:BSU19220-MONOMER
TIGRFAMs:TIGR01389 Uniprot:O34748
Length = 591
Score = 310 (114.2 bits), Expect = 5.3e-27, P = 5.3e-27
Identities = 80/222 (36%), Positives = 120/222 (54%)
Query: 105 ESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLS 164
+ + KL Y++PE+L S F+ LQ + + +AIDE HC S WGHDFRP Y+ +
Sbjct: 105 KEGAYKLFYITPERLT-SIEFIRILQGID----VPLVAIDEAHCISQWGHDFRPSYRNIE 159
Query: 165 ILKTMFPDVP-ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQK 223
IL D P I+ LTATAT +V D+ K L I+ + F+R NL ++V +K +
Sbjct: 160 ILFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKV-VKGENKD 218
Query: 224 DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------ 277
+DE + R+++GI+YT + KE + + E L+ +R YH L +V
Sbjct: 219 RFIDEYV----QNNRHEAGIVYTATRKEADRIYERLKRNQVRAGRYHGGLADDVRKEQQE 274
Query: 278 ------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+ AFG+GIDK N+RFV+H + K ME++YQ
Sbjct: 275 RFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQ 316
>ASPGD|ASPL0000072255 [details] [associations]
symbol:recQ species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 TIGRFAMs:TIGR00614 GO:GO:0008026
HOGENOM:HOG000044388 ProteinModelPortal:C8V8Q7
EnsemblFungi:CADANIAT00006022 OMA:ARPNIHY Uniprot:C8V8Q7
Length = 541
Score = 247 (92.0 bits), Expect = 9.2e-27, Sum P(2) = 9.2e-27
Identities = 58/156 (37%), Positives = 90/156 (57%)
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKS 124
+TD + N L A+ + + ++ + + +++ + L++ ++LLYV+PE L ++ +
Sbjct: 58 MTD-QVNALQALGVPVATINSTVSLAERRVILED---LLSGHPRIRLLYVTPE-LCQNNT 112
Query: 125 FMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMF--PDVPILGLTATA 182
F LQ M+K L RIAIDE HC S WGHDFRP Y+ LS + P VPI LTATA
Sbjct: 113 FRRNLQTMHKQRELVRIAIDEAHCISEWGHDFRPAYKALSWFRHSLTNPPVPISALTATA 172
Query: 183 TTKVMLDVQKMLQIED--CVVIKAPFNRPNLFYEVR 216
T++V D+ +L + + P RPN+ YE+R
Sbjct: 173 TSQVRTDIINILGLNPRRLKIFSTPSARPNIHYEIR 208
Score = 84 (34.6 bits), Expect = 9.2e-27, Sum P(2) = 9.2e-27
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
AFG+GID P VRFV+H ++ E F Q S
Sbjct: 328 AFGMGIDNPEVRFVVHWSPPRTFEGFVQES 357
>UNIPROTKB|Q8EEK1 [details] [associations]
symbol:SO_2380 "ATP-dependent DNA helicase RecQ family"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
OMA:GHNFRPD ProtClustDB:CLSK906704 RefSeq:NP_717970.1
ProteinModelPortal:Q8EEK1 GeneID:1170099 KEGG:son:SO_2380
PATRIC:23524381 Uniprot:Q8EEK1
Length = 654
Score = 290 (107.1 bits), Expect = 1.1e-24, P = 1.1e-24
Identities = 100/320 (31%), Positives = 155/320 (48%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQ 72
S L+ +F ++FRP Q I L + ++ I PT S + +LT
Sbjct: 16 SRLQQQFGFSEFRPGQGEVITQLLAGQSSLAIFPTGSGKSLCYQFTALQLPHLTLVVSPL 75
Query: 73 LAAINIAL--LKKDAIIIMPTGKLL---KKKKICLMTESSSLKLLYVSPEKLAKSKSFMT 127
LA I L L++ I L + +++ S LKLL VS E+ K++ F
Sbjct: 76 LALIKDQLNFLQQKGIKAASIDSTLTPEQTQQVMREARSGQLKLLMVSVERF-KNERFRQ 134
Query: 128 KLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVP-ILGLTATATTK 185
+Q + L+ + +DE HC S WGH+FRPDY L + + +P +L LTATAT K
Sbjct: 135 FIQSIP----LSMLVVDEAHCISEWGHNFRPDYLKLPDYCREL--SIPLVLLLTATATRK 188
Query: 186 VMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIY 245
V D+ I+ +++ F R NL ++ + P A ++ L L + + F + +GI+Y
Sbjct: 189 VKQDMAIRFDIKPQHIVQTGFYRSNL--DLTVLPVASENKLRILKQQL-QSF-DGAGIVY 244
Query: 246 TTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDK 287
T E++ +L + G AYHA + + +IAFG+GIDK
Sbjct: 245 VTLQHTAEEVASQLCSMGFVAQAYHAGFDDDKRQQIQHDFMLGQTQIVVATIAFGMGIDK 304
Query: 288 PNVRFVIHHCLSKSMENFYQ 307
N+RFVIH+ L KS+EN+ Q
Sbjct: 305 SNIRFVIHYDLPKSIENYCQ 324
>TIGR_CMR|SO_2380 [details] [associations]
symbol:SO_2380 "RecQ domain protein" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0006310 "DNA recombination" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614 GO:GO:0008026
HSSP:P15043 HOGENOM:HOG000044388 KO:K03654 OMA:GHNFRPD
ProtClustDB:CLSK906704 RefSeq:NP_717970.1 ProteinModelPortal:Q8EEK1
GeneID:1170099 KEGG:son:SO_2380 PATRIC:23524381 Uniprot:Q8EEK1
Length = 654
Score = 290 (107.1 bits), Expect = 1.1e-24, P = 1.1e-24
Identities = 100/320 (31%), Positives = 155/320 (48%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKFNLTDFRPNQ 72
S L+ +F ++FRP Q I L + ++ I PT S + +LT
Sbjct: 16 SRLQQQFGFSEFRPGQGEVITQLLAGQSSLAIFPTGSGKSLCYQFTALQLPHLTLVVSPL 75
Query: 73 LAAINIAL--LKKDAIIIMPTGKLL---KKKKICLMTESSSLKLLYVSPEKLAKSKSFMT 127
LA I L L++ I L + +++ S LKLL VS E+ K++ F
Sbjct: 76 LALIKDQLNFLQQKGIKAASIDSTLTPEQTQQVMREARSGQLKLLMVSVERF-KNERFRQ 134
Query: 128 KLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVP-ILGLTATATTK 185
+Q + L+ + +DE HC S WGH+FRPDY L + + +P +L LTATAT K
Sbjct: 135 FIQSIP----LSMLVVDEAHCISEWGHNFRPDYLKLPDYCREL--SIPLVLLLTATATRK 188
Query: 186 VMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIY 245
V D+ I+ +++ F R NL ++ + P A ++ L L + + F + +GI+Y
Sbjct: 189 VKQDMAIRFDIKPQHIVQTGFYRSNL--DLTVLPVASENKLRILKQQL-QSF-DGAGIVY 244
Query: 246 TTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDK 287
T E++ +L + G AYHA + + +IAFG+GIDK
Sbjct: 245 VTLQHTAEEVASQLCSMGFVAQAYHAGFDDDKRQQIQHDFMLGQTQIVVATIAFGMGIDK 304
Query: 288 PNVRFVIHHCLSKSMENFYQ 307
N+RFVIH+ L KS+EN+ Q
Sbjct: 305 SNIRFVIHYDLPKSIENYCQ 324
>TIGR_CMR|BA_1505 [details] [associations]
symbol:BA_1505 "ATP-dependent DNA helicase RecQ"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
OMA:DALIIMP RefSeq:NP_843957.1 RefSeq:YP_018128.2
RefSeq:YP_027663.1 ProteinModelPortal:Q81SY8 DNASU:1087356
EnsemblBacteria:EBBACT00000009666 EnsemblBacteria:EBBACT00000015103
EnsemblBacteria:EBBACT00000023330 GeneID:1087356 GeneID:2817068
GeneID:2848363 KEGG:ban:BA_1505 KEGG:bar:GBAA_1505 KEGG:bat:BAS1394
ProtClustDB:CLSK916267 BioCyc:BANT260799:GJAJ-1468-MONOMER
BioCyc:BANT261594:GJ7F-1530-MONOMER Uniprot:Q81SY8
Length = 509
Score = 286 (105.7 bits), Expect = 1.3e-24, P = 1.3e-24
Identities = 91/325 (28%), Positives = 156/325 (48%)
Query: 10 RVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT--------DYPWSDRVRSVLKS 61
++ L F ++FRP Q I L KD I ++PT +P R +VL
Sbjct: 2 KLEEYLYKWFGYSEFRPGQKGVITDLLEGKDVIAMLPTGRGKSMCYQFPGLMREGTVLVV 61
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAK 121
L +Q+ + + KD +I + + L +K+ M + SS K ++VSPE L +
Sbjct: 62 S-PLLSLMEDQVTQLKYVV--KDRVIAFNSFRTLNEKREA-MKKLSSYKFIFVSPEML-Q 116
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
S+ + +L+K++ ++ +DE HC S WG+DFRPDY+ L+++ +L LTAT
Sbjct: 117 SELLIRELKKIH----ISLFVVDEAHCISQWGYDFRPDYKKLNVVIENIGSPTVLALTAT 172
Query: 182 ATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQS 241
AT V+ D+ L ++ +RPN+ +V+ ++ L +M +
Sbjct: 173 ATKGVLQDIADSLNLKGAAEHVYSIDRPNIAMDVQFVETIEEKKEALLEQVM---YLQGP 229
Query: 242 GIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE------------SN------VSIAFG 282
GI+Y +S E L E LR +G+ V+ YH +E +N + AFG
Sbjct: 230 GIVYCSSRAWTERLTEYLRGKGVTGVAFYHGGMEHEERMLIQQQFMNNQLQLVICTSAFG 289
Query: 283 LGIDKPNVRFVIHHCLSKSMENFYQ 307
+G++K N R++IH ++ ++ Q
Sbjct: 290 MGVNKANTRYIIHFHYPTNIASYLQ 314
>TIGR_CMR|SPO_0107 [details] [associations]
symbol:SPO_0107 "ATP-dependent DNA helicase RecQ"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
GO:GO:0009432 HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389
OMA:YCLSRAK RefSeq:YP_165381.1 ProteinModelPortal:Q5LWQ8
GeneID:3194995 KEGG:sil:SPO0107 PATRIC:23373451
ProtClustDB:CLSK933158 Uniprot:Q5LWQ8
Length = 679
Score = 288 (106.4 bits), Expect = 1.9e-24, P = 1.9e-24
Identities = 95/320 (29%), Positives = 154/320 (48%)
Query: 14 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFN-----LT 66
+L+ F FRP Q ++ + IMPT S ++ ++++ L
Sbjct: 7 LLRDVFGFDAFRPGQEEIAQAVAEGENVLAIMPTGGGKSLCFQLPALMREGVTVVISPLI 66
Query: 67 DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFM 126
+Q+ ++ A ++ A+ T + + + + E+ LKLLY++PE+LA S + M
Sbjct: 67 ALMRDQVRSLQEAGVEAGALTSGNTPE--ETEAVWQALEAGRLKLLYMAPERLA-SGAAM 123
Query: 127 TKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKV 186
L+++ G ++ IA+DE HC S WGHDFRPDY + L+ VP+ TATA +
Sbjct: 124 GMLRRI---G-VSLIAVDEAHCVSQWGHDFRPDYLRIGELRRAL-GVPLAAFTATADAET 178
Query: 187 MLD-VQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIY 245
+ V K+ E+ F+RPN+ K + ++ LD R R QSGI+Y
Sbjct: 179 QAEIVAKLFDGEEPRSFLRGFDRPNIHLAFAAKDSPRRQILD----FAGAR-RGQSGIVY 233
Query: 246 TTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDK 287
+ + E L + LR G YH +E+ ++AFG+GIDK
Sbjct: 234 CGTRAKTETLAQALREDGHSACHYHGGMEAEDRRIVETRFAREDGLIVVATVAFGMGIDK 293
Query: 288 PNVRFVIHHCLSKSMENFYQ 307
P++R+V H L KS+E +YQ
Sbjct: 294 PDIRWVAHADLPKSIEAYYQ 313
>UNIPROTKB|Q47WD5 [details] [associations]
symbol:CPS_4237 "RecQ domain protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 TIGRFAMs:TIGR00614
GO:GO:0008026 HOGENOM:HOG000044388 KO:K03654 RefSeq:YP_270887.1
ProteinModelPortal:Q47WD5 STRING:Q47WD5 GeneID:3521770
KEGG:cps:CPS_4237 PATRIC:21471339 OMA:GHNFRPD
ProtClustDB:CLSK906704 BioCyc:CPSY167879:GI48-4247-MONOMER
Uniprot:Q47WD5
Length = 690
Score = 287 (106.1 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 95/328 (28%), Positives = 153/328 (46%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKF 63
+Y + +++ L F FRP Q I L + ++ I PT S +
Sbjct: 6 DYSHKECLKASLLETFGFDGFRPGQEQTITQLLKGQSSLSIFPTGSGKSLCYQLTALHLP 65
Query: 64 NLTDFRPNQLAAIN--IALLKKDAIIIMPTGKLLKKKK---ICLMTESSSLKLLYVSPEK 118
+LT LA + ++ L I LK + + +K+L VS E+
Sbjct: 66 HLTLVVSPLLALMKDQLSFLASKGIKAASIDSTLKGNEAQTVMAGVRDGDIKVLMVSVER 125
Query: 119 LAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILG 177
K++ F ++ + ++ + +DE HC S WGH+FRPDY L S + + + +L
Sbjct: 126 F-KNERFRQFIESVP----VSMLVVDEAHCISEWGHNFRPDYLKLPSYCQALNISLVLL- 179
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT KV D+ I D +++ F R NL ++ + P Q +L ++S +
Sbjct: 180 LTATATRKVKQDMAAKFAIRDEHIVQTGFYRSNL--DLSVLPVTQAHKNKQLEQIISAQ- 236
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SI 279
+GI+Y T E + + L+ +G+ AYHA +S+ +I
Sbjct: 237 -QGAGIVYVTLQHSAETVAQYLKQQGINACAYHAGFDSDTRSQIQQDFMAGKIQVIVATI 295
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
AFG+GIDK N+RFVIH+ L KS+EN+ Q
Sbjct: 296 AFGMGIDKSNIRFVIHYDLPKSIENYSQ 323
>TIGR_CMR|CPS_4237 [details] [associations]
symbol:CPS_4237 "RecQ domain protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0004386 "helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 TIGRFAMs:TIGR00614
GO:GO:0008026 HOGENOM:HOG000044388 KO:K03654 RefSeq:YP_270887.1
ProteinModelPortal:Q47WD5 STRING:Q47WD5 GeneID:3521770
KEGG:cps:CPS_4237 PATRIC:21471339 OMA:GHNFRPD
ProtClustDB:CLSK906704 BioCyc:CPSY167879:GI48-4247-MONOMER
Uniprot:Q47WD5
Length = 690
Score = 287 (106.1 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 95/328 (28%), Positives = 153/328 (46%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKSKF 63
+Y + +++ L F FRP Q I L + ++ I PT S +
Sbjct: 6 DYSHKECLKASLLETFGFDGFRPGQEQTITQLLKGQSSLSIFPTGSGKSLCYQLTALHLP 65
Query: 64 NLTDFRPNQLAAIN--IALLKKDAIIIMPTGKLLKKKK---ICLMTESSSLKLLYVSPEK 118
+LT LA + ++ L I LK + + +K+L VS E+
Sbjct: 66 HLTLVVSPLLALMKDQLSFLASKGIKAASIDSTLKGNEAQTVMAGVRDGDIKVLMVSVER 125
Query: 119 LAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL-SILKTMFPDVPILG 177
K++ F ++ + ++ + +DE HC S WGH+FRPDY L S + + + +L
Sbjct: 126 F-KNERFRQFIESVP----VSMLVVDEAHCISEWGHNFRPDYLKLPSYCQALNISLVLL- 179
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATAT KV D+ I D +++ F R NL ++ + P Q +L ++S +
Sbjct: 180 LTATATRKVKQDMAAKFAIRDEHIVQTGFYRSNL--DLSVLPVTQAHKNKQLEQIISAQ- 236
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SI 279
+GI+Y T E + + L+ +G+ AYHA +S+ +I
Sbjct: 237 -QGAGIVYVTLQHSAETVAQYLKQQGINACAYHAGFDSDTRSQIQQDFMAGKIQVIVATI 295
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
AFG+GIDK N+RFVIH+ L KS+EN+ Q
Sbjct: 296 AFGMGIDKSNIRFVIHYDLPKSIENYSQ 323
>UNIPROTKB|F1PZR2 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000010396
Uniprot:F1PZR2
Length = 1336
Score = 286 (105.7 bits), Expect = 1.0e-23, P = 1.0e-23
Identities = 94/310 (30%), Positives = 142/310 (45%)
Query: 15 LKSKFNLTDFRPNQLAAINIALL-KKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDFRPN 71
LK F + F+P Q I+ L ++D +++M T Y S + V + L
Sbjct: 517 LKIYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYSGRIGLVISPLI 576
Query: 72 QLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQK 131
L + LK I G + K + + +++Y++PE F+ LQ+
Sbjct: 577 SLMEDQVLQLKMSNIPACFLGSA-QSKNVLEDIKLGKYRIVYITPE-FCSGNLFL--LQQ 632
Query: 132 MYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQ 191
+ + IA+DE HC S WGHDFR ++ L LK + P VPI+ LTATA++ + D+
Sbjct: 633 LQADIGITLIAVDEAHCISEWGHDFRSSFRTLGSLKAILPSVPIVALTATASSSIREDIV 692
Query: 192 KMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQ----SG--IIY 245
+ L +++ + F+RPNL+ EVR K + L +L + ++ RN G IIY
Sbjct: 693 RCLNLKNPQITCTGFDRPNLYLEVRRKTGS---ILQDLDQFLVQKTRNSIWEFEGPTIIY 749
Query: 246 TTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHCLSKSMENF 305
S K E + ELR L AYHA GL I R IHH +
Sbjct: 750 CPSRKTTEQVTAELRKLKLACGAYHA----------GLDIKS---RREIHHRFMRDEIQC 796
Query: 306 YQVSIAFGLG 315
+IAFG+G
Sbjct: 797 VVATIAFGMG 806
>UNIPROTKB|F1PZR3 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000010395
Uniprot:F1PZR3
Length = 1499
Score = 285 (105.4 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 92/306 (30%), Positives = 138/306 (45%)
Query: 15 LKSKFNLTDFRPNQLAAINIALL-KKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDFRPN 71
LK F + F+P Q I+ L ++D +++M T Y S + V + L
Sbjct: 598 LKIYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYSGRIGLVISPLI 657
Query: 72 QLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQK 131
L + LK I G + K + + +++Y++PE F+ LQ+
Sbjct: 658 SLMEDQVLQLKMSNIPACFLGSA-QSKNVLEDIKLGKYRIVYITPE-FCSGNLFL--LQQ 713
Query: 132 MYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQ 191
+ + IA+DE HC S WGHDFR ++ L LK + P VPI+ LTATA++ + D+
Sbjct: 714 LQADIGITLIAVDEAHCISEWGHDFRSSFRTLGSLKAILPSVPIVALTATASSSIREDIV 773
Query: 192 KMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSG--IIYTTSI 249
+ L +++ + F+RPNL+ EVR K + LD+ + G IIY S
Sbjct: 774 RCLNLKNPQITCTGFDRPNLYLEVRRKTGSILQDLDQFLVQKTSSIWEFEGPTIIYCPSR 833
Query: 250 KECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
K E + ELR L AYHA GL I R IHH + +
Sbjct: 834 KTTEQVTAELRKLKLACGAYHA----------GLDIKS---RREIHHRFMRDEIQCVVAT 880
Query: 310 IAFGLG 315
IAFG+G
Sbjct: 881 IAFGMG 886
>UNIPROTKB|F1PUF8 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000037050
OMA:TERICLM Uniprot:F1PUF8
Length = 1574
Score = 285 (105.4 bits), Expect = 1.7e-23, P = 1.7e-23
Identities = 92/306 (30%), Positives = 138/306 (45%)
Query: 15 LKSKFNLTDFRPNQLAAINIALL-KKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDFRPN 71
LK F + F+P Q I+ L ++D +++M T Y S + V + L
Sbjct: 630 LKIYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYSGRIGLVISPLI 689
Query: 72 QLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQK 131
L + LK I G + K + + +++Y++PE F+ LQ+
Sbjct: 690 SLMEDQVLQLKMSNIPACFLGSA-QSKNVLEDIKLGKYRIVYITPE-FCSGNLFL--LQQ 745
Query: 132 MYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQ 191
+ + IA+DE HC S WGHDFR ++ L LK + P VPI+ LTATA++ + D+
Sbjct: 746 LQADIGITLIAVDEAHCISEWGHDFRSSFRTLGSLKAILPSVPIVALTATASSSIREDIV 805
Query: 192 KMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSG--IIYTTSI 249
+ L +++ + F+RPNL+ EVR K + LD+ + G IIY S
Sbjct: 806 RCLNLKNPQITCTGFDRPNLYLEVRRKTGSILQDLDQFLVQKTSSIWEFEGPTIIYCPSR 865
Query: 250 KECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVS 309
K E + ELR L AYHA GL I R IHH + +
Sbjct: 866 KTTEQVTAELRKLKLACGAYHA----------GLDIKS---RREIHHRFMRDEIQCVVAT 912
Query: 310 IAFGLG 315
IAFG+G
Sbjct: 913 IAFGMG 918
>UNIPROTKB|O93530 [details] [associations]
symbol:wrn "Werner syndrome ATP-dependent helicase homolog"
species:8355 "Xenopus laevis" [GO:0000287 "magnesium ion binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS] [GO:0030145
"manganese ion binding" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030145 GO:GO:0006310
SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 KO:K10900 CTD:7486 HOVERGEN:HBG000325
EMBL:AF067418 PIR:T14895 RefSeq:NP_001081838.1 UniGene:Xl.404
ProteinModelPortal:O93530 SMR:O93530 GeneID:398079 KEGG:xla:398079
Xenbase:XB-GENE-992879 Uniprot:O93530
Length = 1436
Score = 278 (102.9 bits), Expect = 8.1e-23, P = 8.1e-23
Identities = 90/313 (28%), Positives = 145/313 (46%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALL-KKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDFR 69
S LK+ F + F+P Q ++ L ++D +++M T Y S + V S +
Sbjct: 479 SCLKTYFGHSSFKPVQWKVVHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVICP 538
Query: 70 PNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKL 129
L + L+ I G + K + + ++++Y++PE ++ S + L
Sbjct: 539 LISLMEDQVLQLEMSNISSCFLGSA-QSKNVLQDVKDGKMRVIYMTPEFCSRGISLLQDL 597
Query: 130 QKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLD 189
Y G + IAIDE HC S WGHDFR Y+ L LK M P+VPI+ LTATA+ + D
Sbjct: 598 DNRY--G-ITLIAIDEAHCISEWGHDFRSAYRSLGSLKRMLPNVPIVALTATASPSIRED 654
Query: 190 VQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSG------- 242
+ K L + + V F+RPNL+ +V K +D L + ++ + SG
Sbjct: 655 ITKSLNLHNPQVTCTSFDRPNLYLDVARKTT--NISID-LRQFLIKK-QQGSGWEFEGAT 710
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHCLSKSM 302
I+Y + K E + EL G+ YHA G+GI + R +HH +
Sbjct: 711 IVYCPTRKTSEQVTAELIKLGIACGTYHA----------GMGIKQ---RREVHHRFMRDE 757
Query: 303 ENFYQVSIAFGLG 315
+ ++AFG+G
Sbjct: 758 IHCVVATVAFGMG 770
>WB|WBGene00004322 [details] [associations]
symbol:rcq-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0008340 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006974 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
EMBL:Z38112 HSSP:P15043 KO:K10902 PIR:T20430 RefSeq:NP_497810.1
ProteinModelPortal:Q19046 SMR:Q19046 PaxDb:Q19046
EnsemblMetazoa:E03A3.2 GeneID:175522 KEGG:cel:CELE_E03A3.2
UCSC:E03A3.2 CTD:175522 WormBase:E03A3.2 HOGENOM:HOG000021815
InParanoid:Q19046 OMA:AWAEIFN NextBio:888512 Uniprot:Q19046
Length = 809
Score = 224 (83.9 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 79/268 (29%), Positives = 122/268 (45%)
Query: 28 QLAAINIALLKK-DAIIIMPTDYPWS--DRVRSVLKSKFNLTDFRPNQLAAINIALLKKD 84
Q+ AIN L +K D + +PT S ++ +V+ + L I+ LK+
Sbjct: 183 QMQAINCILKRKCDVYVSLPTGAGKSLCYQLPAVVHGGITVVISPLIALMKDQISSLKRK 242
Query: 85 AI---IIMPTGKLLKKKKIC--LMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLA 139
I + T +++ +I L E ++++LY++ E +A + L + L
Sbjct: 243 GIPCETLNSTLTTVERSRIMGELAKEKPTIRMLYLTAEGVATDGT-KKLLNGLANRDVLR 301
Query: 140 RIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDC 199
I +DE HC + WGHDFRPDY L L+ + P VP + LTATA K D+ L++ +
Sbjct: 302 YIVVDEAHCVTQWGHDFRPDYLTLGSLRDVCPGVPWVALTATANAKAQDDIAFQLKLRNP 361
Query: 200 VVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS---------RRFRNQ-----SGIIY 245
K+ R NLFY+ + K CL A S R +N+ S I+Y
Sbjct: 362 ESFKSGTYRDNLFYDNHMASFITK-CLTVDAKTSSSNLTKHEKAERSQNKKTFTGSAIVY 420
Query: 246 TTSIKECEDLREELRNRGLRVSAYHAKL 273
S EC + + L G+ AYHA L
Sbjct: 421 CRSRNECGQVAKMLEIAGIPAMAYHAGL 448
Score = 95 (38.5 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSF 319
++AFG+GIDKP+VR VIH S+++ +YQ + G GK S+
Sbjct: 471 TVAFGMGIDKPDVRAVIHWSPSQNLAGYYQEAGRAGRDGKRSY 513
>ZFIN|ZDB-GENE-070702-2 [details] [associations]
symbol:wrn "Werner syndrome" species:7955 "Danio
rerio" [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00474 SMART:SM00490
SMART:SM00956 ZFIN:ZDB-GENE-070702-2 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:BX537303 IPI:IPI00993584
ProteinModelPortal:E9QGF6 Ensembl:ENSDART00000136531 Uniprot:E9QGF6
Length = 1436
Score = 230 (86.0 bits), Expect = 8.6e-22, Sum P(2) = 8.6e-22
Identities = 75/281 (26%), Positives = 130/281 (46%)
Query: 6 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALL-KKDAIIIMPTDYPWSDRVRSVLKSKFN 64
P ++++ LK F F+P Q I L ++D +++M T Y S L +F
Sbjct: 427 PVPEQIKC-LKMFFGHHSFKPVQWKVIQSILTERRDNLVVMATGYGKS------LCFQFP 479
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKL-------LKKKKICLMTESSSLKLLYVSPE 117
+ + + L +D ++ + + + K + + +++Y++PE
Sbjct: 480 PVYCQTISVVISPLIALMEDQVLQLTMSNIPACFLGSAQTKNLNEQVKRGDFRVVYMTPE 539
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
+ + + +L + G L+ IA+DE HC S WGHDFR Y+ L LK P VP L
Sbjct: 540 FCSGNIPLLVQLDRT--VG-LSLIAVDEAHCISQWGHDFRSAYRELGKLKKNLPTVPFLA 596
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRR- 236
LTATA+ + D+ K L + + ++ F+RPNL+ +V K D + +L + ++
Sbjct: 597 LTATASPSIRDDIIKSLHLINPMITCTSFDRPNLYLDVNRKSG---DVIQDLKRFLVKKK 653
Query: 237 ---FRNQ-SGIIYTTSIKECEDLREELRNRGLRVSAYHAKL 273
+ + S I+Y S KE E + L + YHA L
Sbjct: 654 GGGYEFEGSAIVYCPSKKEAERVTTALFKLDIPCGVYHAGL 694
Score = 87 (35.7 bits), Expect = 8.6e-22, Sum P(2) = 8.6e-22
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GI+K ++R VIH+ K ME++YQ
Sbjct: 773 TVAFGMGINKSDIRKVIHYGAPKEMESYYQ 802
>WB|WBGene00006944 [details] [associations]
symbol:wrn-1 species:6239 "Caenorhabditis elegans"
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IMP] [GO:0010212
"response to ionizing radiation" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006259 "DNA metabolic
process" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005662 "DNA replication factor A complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0008340 GO:GO:0002009
GO:GO:0040007 GO:GO:0018991 GO:GO:0005694 GO:GO:0005654
GO:GO:0002119 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0010171 GO:GO:0040018 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0010212 GO:GO:0007049 GO:GO:0006310 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K10900 EMBL:FO080970
PIR:T16087 RefSeq:NP_495324.2 ProteinModelPortal:Q19546 SMR:Q19546
IntAct:Q19546 MINT:MINT-226609 STRING:Q19546 PaxDb:Q19546
EnsemblMetazoa:F18C5.2 GeneID:174081 KEGG:cel:CELE_F18C5.2
UCSC:F18C5.2 CTD:174081 WormBase:F18C5.2 HOGENOM:HOG000016918
InParanoid:Q19546 OMA:CSGFDRP NextBio:882429 Uniprot:Q19546
Length = 1056
Score = 224 (83.9 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 76/278 (27%), Positives = 130/278 (46%)
Query: 13 SVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSD--RVRSVLKSKFNLTDFRP 70
+ L F FR Q + L KD ++M T Y S ++ S+L + + P
Sbjct: 217 NALNEFFGHKGFREKQWDVVRNVLGGKDQFVLMSTGYGKSVCYQLPSLLLNSMTVV-VSP 275
Query: 71 NQLAAIN---IALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSF-- 125
++ +N L+ K + G + + + ++ +Y+SPE + K
Sbjct: 276 -LISLMNDQVTTLVSKGIDAVKLDGHSTQIEWDQVANNMHRIRFIYMSPEMVTSQKGLEL 334
Query: 126 MTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFP--DVPILGLTATAT 183
+T +K ++ +AIDE HC S WGHDFR Y++L+ ++ ++P++ LTATAT
Sbjct: 335 LTSCRKH-----ISLLAIDEAHCVSQWGHDFRNSYRHLAEIRNRSDLCNIPMIALTATAT 389
Query: 184 TKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSR---RFRNQ 240
+V DV L++ ++ F+R NL+ V + KD ++L M + R+
Sbjct: 390 VRVRDDVIANLRLRKPLITTTSFDRKNLYISVH----SSKDMAEDLGLFMKTDEVKGRHF 445
Query: 241 SG--IIYTTSIKECEDLREELRNRGLRVSAYHAKLESN 276
G IIY + + +D+ LR G+R + YHA L N
Sbjct: 446 GGPTIIYCQTKQMVDDVNCVLRRIGVRSAHYHAGLTKN 483
Score = 93 (37.8 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 16/30 (53%), Positives = 25/30 (83%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+GIDKP+VR VIH+ ++E++YQ
Sbjct: 503 TVAFGMGIDKPDVRNVIHYGCPNNIESYYQ 532
>UNIPROTKB|Q14191 [details] [associations]
symbol:WRN "Werner syndrome ATP-dependent helicase"
species:9606 "Homo sapiens" [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0001302 "replicative cell aging" evidence=IEA] [GO:0040009
"regulation of growth rate" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031297 "replication fork processing" evidence=IMP;IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0007569 "cell aging" evidence=IMP]
[GO:0010259 "multicellular organismal aging" evidence=IMP]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0007568 "aging" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003678 "DNA helicase activity" evidence=IDA;IMP]
[GO:0004386 "helicase activity" evidence=IDA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0000731 "DNA synthesis involved
in DNA repair" evidence=IDA] [GO:0010225 "response to UV-C"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0032389 "MutLalpha complex" evidence=IDA] [GO:0000403 "Y-form
DNA binding" evidence=IDA] [GO:0043138 "3'-5' DNA helicase
activity" evidence=IDA] [GO:0000405 "bubble DNA binding"
evidence=IDA] [GO:0009378 "four-way junction helicase activity"
evidence=IDA] [GO:0051880 "G-quadruplex DNA binding" evidence=IDA]
[GO:0006284 "base-excision repair" evidence=IDA] [GO:0051345
"positive regulation of hydrolase activity" evidence=IDA]
[GO:0006979 "response to oxidative stress" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0000287 "magnesium ion
binding" evidence=IDA] [GO:0030145 "manganese ion binding"
evidence=IDA] [GO:0006259 "DNA metabolic process" evidence=IDA]
[GO:0006302 "double-strand break repair" evidence=IMP] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0071480 "cellular response to gamma
radiation" evidence=IDA] [GO:0004527 "exonuclease activity"
evidence=IDA] [GO:0009267 "cellular response to starvation"
evidence=IDA] [GO:0032066 "nucleolus to nucleoplasm transport"
evidence=IDA] [GO:0042981 "regulation of apoptotic process"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
evidence=IMP;IDA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00474 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0005813 Pathway_Interaction_DB:telomerasepathway
GO:GO:0042803 GO:GO:0005654 GO:GO:0006979 GO:GO:0005730
GO:GO:0042981 GO:GO:0032403 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 GO:GO:0004003 SUPFAM:SSF53098
MIM:114500 GO:GO:0040009 GO:GO:0008408 GO:GO:0051345 GO:GO:0010259
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000723 GO:GO:0010225 GO:GO:0007569 eggNOG:COG0514
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403
GO:GO:0000731 GO:GO:0000405 GO:GO:0009378 GO:GO:0051880
GO:GO:0031297 GO:GO:0043138 GO:GO:0032066 KO:K10900 EMBL:L76937
EMBL:AY818673 EMBL:AF091214 EMBL:AF181897 EMBL:AF181896
EMBL:AY442327 EMBL:AC084736 IPI:IPI00029107 RefSeq:NP_000544.2
UniGene:Hs.632050 PDB:2AXL PDB:2DGZ PDB:2E1E PDB:2E1F PDB:2FBT
PDB:2FBV PDB:2FBX PDB:2FBY PDB:2FC0 PDB:3AAF PDBsum:2AXL
PDBsum:2DGZ PDBsum:2E1E PDBsum:2E1F PDBsum:2FBT PDBsum:2FBV
PDBsum:2FBX PDBsum:2FBY PDBsum:2FC0 PDBsum:3AAF DisProt:DP00443
ProteinModelPortal:Q14191 SMR:Q14191 DIP:DIP-31380N IntAct:Q14191
MINT:MINT-95856 STRING:Q14191 PhosphoSite:Q14191 DMDM:6136393
PaxDb:Q14191 PRIDE:Q14191 Ensembl:ENST00000298139 GeneID:7486
KEGG:hsa:7486 UCSC:uc003xio.4 CTD:7486 GeneCards:GC08P030948
H-InvDB:HIX0007441 HGNC:HGNC:12791 HPA:HPA028661 MIM:277700
MIM:604611 neXtProt:NX_Q14191 Orphanet:902 PharmGKB:PA367
HOGENOM:HOG000146447 HOVERGEN:HBG000325 InParanoid:Q14191
OMA:GIEGDQW OrthoDB:EOG4DNF3J PhylomeDB:Q14191
EvolutionaryTrace:Q14191 GenomeRNAi:7486 NextBio:29326 Bgee:Q14191
CleanEx:HS_WRN Genevestigator:Q14191 GermOnline:ENSG00000165392
Uniprot:Q14191
Length = 1432
Score = 264 (98.0 bits), Expect = 2.5e-21, P = 2.5e-21
Identities = 92/315 (29%), Positives = 141/315 (44%)
Query: 6 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALL-KKDAIIIMPTDYPWS--DRVRSVLKSK 62
P ++V + LK F + F+P Q I+ L ++D + +M T Y S + V K
Sbjct: 532 PNEEQV-TCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGK 590
Query: 63 FNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKS 122
L L + LK I G + + + + +++YV+PE + +
Sbjct: 591 IGLVISPLISLMEDQVLQLKMSNIPACFLGSA-QSENVLTDIKLGKYRIVYVTPEYCSGN 649
Query: 123 KSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATA 182
+ +L+ G + IA+DE HC S WGHDFR ++ L LKT P VPI+ LTATA
Sbjct: 650 MGLLQQLEA--DIG-ITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPMVPIVALTATA 706
Query: 183 TTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPA-AQKDCLDELADLMSR-RFRNQ 240
++ + D+ + L + + + F+RPNL+ EVR K +D L S F
Sbjct: 707 SSSIREDIVRCLNLRNPQITCTGFDRPNLYLEVRRKTGNILQDLQPFLVKTSSHWEFEGP 766
Query: 241 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHCLSK 300
+ IIY S K + + ELR L YHA G+ + R IHH +
Sbjct: 767 T-IIYCPSRKMTQQVTGELRKLNLSCGTYHA----------GMSF---STRKDIHHRFVR 812
Query: 301 SMENFYQVSIAFGLG 315
+IAFG+G
Sbjct: 813 DEIQCVIATIAFGMG 827
>UNIPROTKB|E1BEE6 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IEA] [GO:0032389
"MutLalpha complex" evidence=IEA] [GO:0032066 "nucleolus to
nucleoplasm transport" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0030145 "manganese ion binding"
evidence=IEA] [GO:0010259 "multicellular organismal aging"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0001302 "replicative cell aging"
evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0000403 "Y-form
DNA binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 GO:GO:0010259 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0010225 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0031297
GO:GO:0032389 GO:GO:0032066 OMA:GIEGDQW EMBL:DAAA02060458
EMBL:DAAA02060459 EMBL:DAAA02060460 EMBL:DAAA02060461
EMBL:DAAA02060462 EMBL:DAAA02060463 EMBL:DAAA02060464
EMBL:DAAA02060465 EMBL:DAAA02060466 EMBL:DAAA02060467
EMBL:DAAA02060468 EMBL:DAAA02060469 EMBL:DAAA02060470
EMBL:DAAA02060471 EMBL:DAAA02060472 EMBL:DAAA02060473
EMBL:DAAA02060474 EMBL:DAAA02060475 EMBL:DAAA02060476
EMBL:DAAA02060477 EMBL:DAAA02060478 EMBL:DAAA02060479
EMBL:DAAA02060480 EMBL:DAAA02060481 EMBL:DAAA02060482
EMBL:DAAA02060483 EMBL:DAAA02060484 EMBL:DAAA02060485
EMBL:DAAA02060486 EMBL:DAAA02060487 EMBL:DAAA02060488
EMBL:DAAA02060489 EMBL:DAAA02060490 EMBL:DAAA02060491
EMBL:DAAA02060492 EMBL:DAAA02060493 EMBL:DAAA02060494
IPI:IPI00920936 Ensembl:ENSBTAT00000028778 Uniprot:E1BEE6
Length = 1404
Score = 263 (97.6 bits), Expect = 3.1e-21, P = 3.1e-21
Identities = 93/323 (28%), Positives = 147/323 (45%)
Query: 1 MLPNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL-KKDAIIIMPTDYPWS--DRVRS 57
+LP P ++ + LK+ F + F+P Q I+ L ++D +++M T Y S +
Sbjct: 494 LLPR-PTEKQI-NCLKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMTTGYGKSLCFQYPP 551
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPE 117
V L L + L+ +I G + K + + +++Y++PE
Sbjct: 552 VYAGGIGLVISPLISLMEDQVLQLEISSIPACFLGSA-QSKNVVEDIKLGKYRIVYLTPE 610
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
+ + + +L+ G + IA+DE HC S WGHDFR ++ L LK FP VPI+
Sbjct: 611 FCSGNLELLRQLEA--NIG-ITLIAVDEAHCISEWGHDFRNSFRDLGCLKAEFPKVPIVA 667
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTATA + V D+ L ++D + F+RPNL+ EV K D L +L + +
Sbjct: 668 LTATAGSSVREDIVCCLNLKDPQITCTGFDRPNLYLEVGRKTG---DILQDLKQFLVCKS 724
Query: 238 RNQ---SG--IIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRF 292
+ G IIY S K E + EL+ L YHA GL I N+R
Sbjct: 725 SSAWEFEGPTIIYCPSRKMTEQVTAELKKLKLACGTYHA----------GLSI---NLRK 771
Query: 293 VIHHCLSKSMENFYQVSIAFGLG 315
+HH + ++AFG+G
Sbjct: 772 QVHHRFMRDEIQCVIATVAFGMG 794
>UNIPROTKB|F1RX70 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00474
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:FP102088 EMBL:FP565873
Ensembl:ENSSSCT00000017248 Uniprot:F1RX70
Length = 1409
Score = 258 (95.9 bits), Expect = 1.1e-20, P = 1.1e-20
Identities = 91/323 (28%), Positives = 149/323 (46%)
Query: 1 MLPNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL-KKDAIIIMPTDYPWS--DRVRS 57
+LP P + ++ + LK+ F + F+P Q I+ L ++D +++M T Y S +
Sbjct: 496 LLPE-PTAKQI-NCLKTYFGHSSFKPVQWKVIHSILEERRDNVVVMATGYGKSLCFQYPP 553
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPE 117
V L L + L+ I G + K + + +++Y++PE
Sbjct: 554 VSVGGIGLVISPLISLMEDQVLQLEMSNIPACFLGSA-QSKNVLEDIKLGKYRIVYLTPE 612
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
+ + + L+ G + IA+DE HC S WGHDFR ++ L LK+ P VPI+
Sbjct: 613 FCSGNLDLLQHLEA--NIG-ITVIAVDEAHCISEWGHDFRNSFRTLGSLKSALPLVPIVA 669
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTAT T+ + D+ + L+++D + F+RPNL+ EV K D L +L + ++
Sbjct: 670 LTATGTSSIREDIVRCLKLKDPQITCTGFDRPNLYLEVGRKTG---DILQDLKQFLVQKT 726
Query: 238 RNQ---SG--IIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRF 292
+ G IIY S K E + EL+ L YHA GL I ++R
Sbjct: 727 SSAWEFEGPTIIYCPSRKMTEQVTAELKKLKLACETYHA----------GLSI---HLRK 773
Query: 293 VIHHCLSKSMENFYQVSIAFGLG 315
+HH + +IAFG+G
Sbjct: 774 QVHHKFMRDEIQCVIATIAFGMG 796
>UNIPROTKB|I3LC91 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IEA] [GO:0032389
"MutLalpha complex" evidence=IEA] [GO:0032066 "nucleolus to
nucleoplasm transport" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0030145 "manganese ion binding"
evidence=IEA] [GO:0010259 "multicellular organismal aging"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0001302 "replicative cell aging"
evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0000403 "Y-form
DNA binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 GO:GO:0010259 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0010225 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0031297
GO:GO:0032389 GO:GO:0032066 OMA:GIEGDQW EMBL:FP102088 EMBL:FP565873
Ensembl:ENSSSCT00000022344 Uniprot:I3LC91
Length = 1507
Score = 258 (95.9 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 91/323 (28%), Positives = 149/323 (46%)
Query: 1 MLPNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL-KKDAIIIMPTDYPWS--DRVRS 57
+LP P + ++ + LK+ F + F+P Q I+ L ++D +++M T Y S +
Sbjct: 595 LLPE-PTAKQI-NCLKTYFGHSSFKPVQWKVIHSILEERRDNVVVMATGYGKSLCFQYPP 652
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPE 117
V L L + L+ I G + K + + +++Y++PE
Sbjct: 653 VSVGGIGLVISPLISLMEDQVLQLEMSNIPACFLGSA-QSKNVLEDIKLGKYRIVYLTPE 711
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
+ + + L+ G + IA+DE HC S WGHDFR ++ L LK+ P VPI+
Sbjct: 712 FCSGNLDLLQHLEA--NIG-ITVIAVDEAHCISEWGHDFRNSFRTLGSLKSALPLVPIVA 768
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
LTAT T+ + D+ + L+++D + F+RPNL+ EV K D L +L + ++
Sbjct: 769 LTATGTSSIREDIVRCLKLKDPQITCTGFDRPNLYLEVGRKTG---DILQDLKQFLVQKT 825
Query: 238 RNQ---SG--IIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRF 292
+ G IIY S K E + EL+ L YHA GL I ++R
Sbjct: 826 SSAWEFEGPTIIYCPSRKMTEQVTAELKKLKLACETYHA----------GLSI---HLRK 872
Query: 293 VIHHCLSKSMENFYQVSIAFGLG 315
+HH + +IAFG+G
Sbjct: 873 QVHHKFMRDEIQCVIATIAFGMG 895
>UNIPROTKB|F1NAR0 [details] [associations]
symbol:F1NAR0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0000403 "Y-form DNA
binding" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=IEA]
[GO:0001302 "replicative cell aging" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IEA] [GO:0006979 "response to oxidative stress"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0009267 "cellular response to starvation"
evidence=IEA] [GO:0009378 "four-way junction helicase activity"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0010259 "multicellular organismal aging" evidence=IEA]
[GO:0030145 "manganese ion binding" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0032066 "nucleolus
to nucleoplasm transport" evidence=IEA] [GO:0032389 "MutLalpha
complex" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723 GO:GO:0010225
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731 GO:GO:0000405
GO:GO:0009378 GO:GO:0051880 GO:GO:0031297 GO:GO:0032389
GO:GO:0032066 OMA:GIEGDQW EMBL:AADN02016143 IPI:IPI01017120
Ensembl:ENSGALT00000016720 Uniprot:F1NAR0
Length = 1367
Score = 257 (95.5 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 89/310 (28%), Positives = 143/310 (46%)
Query: 15 LKSKFNLTDFRPNQLAAINIALL-KKDAIIIMPTDYPWS--DRVRSVLKSKFNLTDFRPN 71
LK+ F + F+P Q I+ L K+D +++M T Y S + V +
Sbjct: 451 LKTYFGHSSFKPVQWKVIHSVLEDKRDNLVVMATGYGKSLCYQFPPVYTGGTGIVICPLI 510
Query: 72 QLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQK 131
L + L I G + K + ++ +++Y++PE + + + LQ
Sbjct: 511 SLMEDQVLQLTMSGISSCLLGSA-QSKDVKDNIKAGLYRVIYMTPEFCSGN---LELLQD 566
Query: 132 MYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQ 191
+ + +A IA+DE HC S WGHDFR ++ L+ LK P VPI+ LTATA+ + D+
Sbjct: 567 IDRTTGIALIAVDEAHCISEWGHDFRISFRKLNSLKKALPSVPIVALTATASPSIREDIV 626
Query: 192 KMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQS----G--IIY 245
L +++ V F+RPNL+ EV + + L +L ++R+ + + G IIY
Sbjct: 627 NCLNLKNPQVTCTSFDRPNLYLEVGRQSG---NTLRDLKQFLTRKGSSSTYEFEGPTIIY 683
Query: 246 TTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHCLSKSMENF 305
S K E + EL G+ AYHA G+GI K R HH +
Sbjct: 684 CPSRKATEQVMFELNKLGVTCGAYHA----------GMGIQK---RRDTHHQFMRDEIQC 730
Query: 306 YQVSIAFGLG 315
++AFG+G
Sbjct: 731 VVATVAFGMG 740
>MGI|MGI:109635 [details] [associations]
symbol:Wrn "Werner syndrome homolog (human)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=ISO] [GO:0000403
"Y-form DNA binding" evidence=ISO] [GO:0000405 "bubble DNA binding"
evidence=ISO] [GO:0000723 "telomere maintenance"
evidence=ISO;IGI;IMP] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=ISO] [GO:0001302 "replicative cell aging"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003678 "DNA helicase
activity" evidence=ISO] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=ISO]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=ISO;IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006259 "DNA metabolic process" evidence=ISO;IMP] [GO:0006260
"DNA replication" evidence=ISO;IMP] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=ISO] [GO:0006979 "response to oxidative
stress" evidence=ISO] [GO:0007569 "cell aging" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISO;IDA] [GO:0009267 "cellular
response to starvation" evidence=ISO] [GO:0009378 "four-way
junction helicase activity" evidence=ISO] [GO:0010225 "response to
UV-C" evidence=ISO] [GO:0010259 "multicellular organismal aging"
evidence=ISO;IGI] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030145 "manganese
ion binding" evidence=ISO] [GO:0031297 "replication fork
processing" evidence=ISO] [GO:0032066 "nucleolus to nucleoplasm
transport" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0040009 "regulation of growth rate" evidence=IMP] [GO:0042803
"protein homodimerization activity" evidence=ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0043138 "3'-5'
DNA helicase activity" evidence=ISO] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IEA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051345 "positive regulation of hydrolase
activity" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] [GO:0071480 "cellular response to gamma radiation"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00474 SMART:SM00490 SMART:SM00956 MGI:MGI:109635
GO:GO:0005524 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145 GO:GO:0006310
GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009 GO:GO:0008408
GO:GO:0010259 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000723 eggNOG:COG0514
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0032066 KO:K10900 CTD:7486
HOGENOM:HOG000146447 HOVERGEN:HBG000325 OMA:GIEGDQW
OrthoDB:EOG4DNF3J EMBL:D86527 EMBL:D86526 EMBL:AF091215
EMBL:AF091216 EMBL:AF241636 EMBL:AC153789 EMBL:AC115809
EMBL:BC050921 EMBL:BC060700 IPI:IPI00113830 PIR:T17452 PIR:T30247
RefSeq:NP_001116294.1 RefSeq:NP_035851.3 UniGene:Mm.228805 PDB:2E6L
PDB:2E6M PDBsum:2E6L PDBsum:2E6M ProteinModelPortal:O09053
SMR:O09053 DIP:DIP-27642N STRING:O09053 PhosphoSite:O09053
PaxDb:O09053 PRIDE:O09053 Ensembl:ENSMUST00000033990
Ensembl:ENSMUST00000033991 GeneID:22427 KEGG:mmu:22427
InParanoid:Q80YP9 EvolutionaryTrace:O09053 NextBio:302865
Bgee:O09053 CleanEx:MM_WRN Genevestigator:O09053
GermOnline:ENSMUSG00000031583 Uniprot:O09053
Length = 1401
Score = 254 (94.5 bits), Expect = 2.8e-20, P = 2.8e-20
Identities = 88/323 (27%), Positives = 147/323 (45%)
Query: 1 MLPNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL-KKDAIIIMPTDYPWS--DRVRS 57
+LP P + ++ + LK+ F + F+P Q I+ L ++D +++M T Y S +
Sbjct: 492 LLPE-PNAKQI-NCLKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPP 549
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPE 117
V K + L + L+ + G + K I + +++Y++PE
Sbjct: 550 VYTGKIGIVISPLISLMEDQVLQLELSNVPACLLGSA-QSKNILGDVKLGKYRVIYITPE 608
Query: 118 KLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILG 177
+ + + +L G + IA+DE HC S WGHDFR ++ L LKT P VP++
Sbjct: 609 FCSGNLDLLQQLDS--SIG-ITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPLVPVIA 665
Query: 178 LTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRF 237
L+ATA++ + D+ L ++D + F+RPNL+ EV K + L +L + R+
Sbjct: 666 LSATASSSIREDIISCLNLKDPQITCTGFDRPNLYLEVGRKTG---NILQDLKPFLVRKA 722
Query: 238 RNQ---SG--IIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRF 292
+ G IIY S K E + EL L YHA G+ I + R
Sbjct: 723 SSAWEFEGPTIIYCPSRKMTEQVTAELGKLNLACRTYHA----------GMKISE---RK 769
Query: 293 VIHHCLSKSMENFYQVSIAFGLG 315
+HH + ++AFG+G
Sbjct: 770 DVHHRFLRDEIQCVVATVAFGMG 792
>UNIPROTKB|J3KSL7 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR002464
InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00690 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5 Ensembl:ENST00000580078
Uniprot:J3KSL7
Length = 198
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 51/118 (43%), Positives = 67/118 (56%)
Query: 102 LMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQ 161
L E K+LY++PE +A S SF L + L+ + +DE HC S WGHDFRPDY
Sbjct: 20 LEREKPQTKILYITPE-MAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYL 78
Query: 162 YLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVI-KAPFNRPNLFYEVRIK 218
L L++ P + LTATAT +V DV L ++ V I K P R NLFY+V+ K
Sbjct: 79 RLGALRSRLGHAPCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFK 136
>RGD|1564788 [details] [associations]
symbol:Wrn "Werner syndrome, RecQ helicase-like" species:10116
"Rattus norvegicus" [GO:0000287 "magnesium ion binding"
evidence=ISO] [GO:0000403 "Y-form DNA binding" evidence=ISO]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000723
"telomere maintenance" evidence=ISO] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO] [GO:0001302 "replicative cell
aging" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=ISO] [GO:0004527 "exonuclease activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006259 "DNA metabolic
process" evidence=ISO] [GO:0006260 "DNA replication"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=ISO] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0006979 "response to oxidative stress"
evidence=ISO] [GO:0007569 "cell aging" evidence=ISO] [GO:0008408
"3'-5' exonuclease activity" evidence=IEA;ISO] [GO:0009267
"cellular response to starvation" evidence=ISO] [GO:0009378
"four-way junction helicase activity" evidence=ISO] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0010259 "multicellular
organismal aging" evidence=ISO] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0030145 "manganese ion binding" evidence=ISO]
[GO:0031297 "replication fork processing" evidence=ISO] [GO:0032066
"nucleolus to nucleoplasm transport" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0040009 "regulation of growth rate"
evidence=ISO] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0042981 "regulation of apoptotic process"
evidence=ISO] [GO:0043138 "3'-5' DNA helicase activity"
evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0051345 "positive regulation of
hydrolase activity" evidence=ISO] [GO:0051880 "G-quadruplex DNA
binding" evidence=ISO] [GO:0071480 "cellular response to gamma
radiation" evidence=ISO] [GO:0032389 "MutLalpha complex"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00474
SMART:SM00490 SMART:SM00956 RGD:1564788 GO:GO:0005524 GO:GO:0005813
GO:GO:0005654 GO:GO:0006979 GO:GO:0005730 GO:GO:0042981
GO:GO:0000287 GO:GO:0006284 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0001302 GO:GO:0030145 GO:GO:0006310 GO:GO:0009267
SUPFAM:SSF53098 GO:GO:0040009 GO:GO:0008408 GO:GO:0051345
GO:GO:0010259 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000723 GO:GO:0010225
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731 GO:GO:0000405
GO:GO:0009378 GO:GO:0051880 GO:GO:0031297 GO:GO:0032389
GO:GO:0032066 IPI:IPI00960063 ProteinModelPortal:F1LTH9
Ensembl:ENSRNOT00000058805 Uniprot:F1LTH9
Length = 1448
Score = 239 (89.2 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 91/326 (27%), Positives = 146/326 (44%)
Query: 1 MLPNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALL-KKDAIIIMPTDYPWS--DRVRS 57
+LP P + ++ + LK+ F F+P Q I+ L ++D +++M T Y S +
Sbjct: 537 LLPE-PNAKQI-NCLKTYFGHCSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPP 594
Query: 58 VLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPE 117
V K + L + L+ I G K + + S K++ E
Sbjct: 595 VYTGKIGIVISPLISLMEDQVLQLEMSNIPACLLGSAQPKNILGDIKLQSKYKVV----E 650
Query: 118 KLAKSKSFMTKLQKMYKAGC---LARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVP 174
+ M + + + +A C + IA+DE HC S WGHDFR ++ L LKT P VP
Sbjct: 651 VWFTYQYCMNQFRMIQEARCSVGITLIAVDEAHCISEWGHDFRSSFRTLGSLKTALPLVP 710
Query: 175 ILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMS 234
++ L+ATA++ + D+ + L ++D + F+RPNL+ EV K + L +L +
Sbjct: 711 VIALSATASSSIREDIIRCLNLKDPHITCTGFDRPNLYLEVERKTG---NILQDLKPFLV 767
Query: 235 RRFRNQ---SG--IIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPN 289
R+ + G IIY S K E + EL + AYHA G+ I +
Sbjct: 768 RKTSSAWEFEGPTIIYCPSRKVTEQVTVELGKLNVACQAYHA----------GMKISE-- 815
Query: 290 VRFVIHHCLSKSMENFYQVSIAFGLG 315
R IHH + +IAFG+G
Sbjct: 816 -RKDIHHRFLRDEIQCVVATIAFGMG 840
>TAIR|locus:2029799 [details] [associations]
symbol:AT1G27880 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0042631 "cellular response
to water deprivation" evidence=IEP] [GO:0006260 "DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 EMBL:AC079280 GO:GO:0006310
GO:GO:0042631 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043
HOGENOM:HOG000264957 KO:K10730 EMBL:AJ421618 EMBL:AK226619
IPI:IPI00519923 RefSeq:NP_174109.2 UniGene:At.40984
ProteinModelPortal:Q0WVW7 SMR:Q0WVW7 PaxDb:Q0WVW7 PRIDE:Q0WVW7
EnsemblPlants:AT1G27880.1 GeneID:839681 KEGG:ath:AT1G27880
KEGG:dosa:Os04t0486800-01 TAIR:At1g27880 InParanoid:Q0WVW7
OMA:THFWGRY PhylomeDB:Q0WVW7 ProtClustDB:CLSN2680265
Genevestigator:Q0WVW7 Uniprot:Q0WVW7
Length = 911
Score = 185 (70.2 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 75/297 (25%), Positives = 130/297 (43%)
Query: 9 DRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKSKFNLT 66
+ + +L + FR QL AI + L ++++PT S ++ +++ L
Sbjct: 255 ENLTKLLNLVYGYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITLV 314
Query: 67 DFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTES------SSLKLLYVSPEKLA 120
+ L ++ I LK II G L ++ TE+ +K+L+VSPE+L
Sbjct: 315 ---VSPLVSLMIDQLKHLPSIIKG-GLLSSSQRPEEATETLRKLKEGIIKVLFVSPERLL 370
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL--SILKTMFPDVPILGL 178
+ F++ + ++ + +DE HC S W H+FRP Y L S+L + IL +
Sbjct: 371 NVE-FLSMFRMSLS---VSLVVVDEAHCVSEWSHNFRPSYMRLKASMLFSELKAECILAM 426
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQ-KDCLDELADLMSRRF 237
TATATT + V L+I +I+ R N V + A + KD L + +
Sbjct: 427 TATATTMTLQAVMSSLEIPSTNLIQKSQLRDNFELSVSLSGANRMKDLLILMESPPYKEI 486
Query: 238 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVI 294
R S I+Y E + + + LR+ + YH+ L + + +R V+
Sbjct: 487 R--SIIVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVV 541
Score = 73 (30.8 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+G+DK +V VIH + SME + Q
Sbjct: 543 TVAFGMGLDKGDVGAVIHFSVPGSMEEYVQ 572
>UNIPROTKB|F8WD97 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 EMBL:AC006559 HGNC:HGNC:9948 ChiTaRS:RECQL
IPI:IPI00792775 ProteinModelPortal:F8WD97 SMR:F8WD97
Ensembl:ENST00000396093 ArrayExpress:F8WD97 Bgee:F8WD97
Uniprot:F8WD97
Length = 211
Score = 184 (69.8 bits), Expect = 5.1e-14, P = 5.1e-14
Identities = 45/139 (32%), Positives = 77/139 (55%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++PWS +V+ +L++ F L FRP QL IN+ + K+ ++MPT S ++ ++
Sbjct: 72 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD 131
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC-----LMTESSSLKLLYVSP 116
F L L + +LK+ I K+ + ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 191
Query: 117 EKLAKSKSFMTKLQKMYKA 135
EK+AKSK FM++L+K Y+A
Sbjct: 192 EKIAKSKMFMSRLEKAYEA 210
>FB|FBgn0040290 [details] [associations]
symbol:RecQ4 "RecQ4" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISS;IDA] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS;IMP]
[GO:0006302 "double-strand break repair" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0045740 "positive
regulation of DNA replication" evidence=IMP] [GO:0010971 "positive
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006284 "base-excision repair" evidence=IMP] [GO:0051301 "cell
division" evidence=IMP] [GO:0002164 "larval development"
evidence=IMP] [GO:0007307 "eggshell chorion gene amplification"
evidence=IMP] [GO:0036292 "DNA rewinding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI;IMP]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0007095 EMBL:AE014296 GO:GO:0051301 GO:GO:0010971
GO:GO:0006284 GO:GO:0008284 GO:GO:0006260 GO:GO:0008270
GO:GO:0006310 GO:GO:0003697 GO:GO:0006302 GO:GO:0045740
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0007307
GO:GO:0002164 HSSP:P15043 KO:K10730 InterPro:IPR021110 Pfam:PF11719
GO:GO:0036292 FlyBase:FBgn0040290 RefSeq:NP_652607.1
UniGene:Dm.1556 ProteinModelPortal:Q9VSE6 SMR:Q9VSE6 IntAct:Q9VSE6
PRIDE:Q9VSE6 EnsemblMetazoa:FBtr0076729 GeneID:53438
KEGG:dme:Dmel_CG7487 UCSC:CG7487-RA CTD:53438 InParanoid:Q9VSE6
OMA:GMPASRR PhylomeDB:Q9VSE6 GenomeRNAi:53438 NextBio:841159
ArrayExpress:Q9VSE6 Bgee:Q9VSE6 Uniprot:Q9VSE6
Length = 1579
Score = 159 (61.0 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
Identities = 77/281 (27%), Positives = 120/281 (42%)
Query: 1 MLPNYPWSDRVRSVLKS--KFNLTDFRPNQLAAINIALLKKDAIIIMPTD---------- 48
+LP+ D VL++ F T+FR Q AI L +++ + T
Sbjct: 846 LLPDGSVQDTTPEVLEALHMFGHTNFRKGQDRAIMRTLSGLSSLVTLSTGSGKSLCYQLP 905
Query: 49 -YPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESS 107
Y +S +V ++ L +Q+ + L+ + T ++ KI M +
Sbjct: 906 AYLYSRKVGAITLVISPLVSLMEDQVTGVP-HFLRAHCLHTNQTAP--QRMKIQQMIANG 962
Query: 108 SLKLLYVSPEKLA---KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL- 163
+ +L VSPE + ++ F L+++ +A IDE HC S W H+FRP Y +
Sbjct: 963 EIDILLVSPEAVVAGERATGFGAILRQLPP---IAFACIDEAHCVSQWSHNFRPSYLMIC 1019
Query: 164 SILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDC---VVIKAPFNRPNLFYEVRIKPA 220
+L+ +LGLTATAT + + L I D ++ P NL V K
Sbjct: 1020 KVLRKNLGVRTVLGLTATATLPTRVSIINHLGISDGERGIISDIPLP-DNLVLSVS-KDE 1077
Query: 221 AQKDCLDELADLMSRRFRN-QSGIIYTTSIKECEDLREELR 260
+ L +L L S RF QS IIY T ECE + +R
Sbjct: 1078 NRDAALLQL--LNSERFEPCQSIIIYCTRRDECERIAGFIR 1116
Score = 85 (35.0 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
Identities = 14/30 (46%), Positives = 25/30 (83%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+IAFG+GI+KP++R VIH+ + ++ E++ Q
Sbjct: 1170 TIAFGMGINKPDIRAVIHYNMPRNFESYVQ 1199
>UNIPROTKB|F1RSP7 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 InterPro:IPR021110 Pfam:PF11719
EMBL:CU468594 Ensembl:ENSSSCT00000006477 Uniprot:F1RSP7
Length = 1204
Score = 147 (56.8 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 60/181 (33%), Positives = 88/181 (48%)
Query: 91 TGKLLKKKKICLM-TESSSLKLLYVSPEKLAKSKS----FMTKLQKMYKAGCLARIAIDE 145
+G K++ L S+ +++L +SPE LA + + F+T+L + A C IDE
Sbjct: 562 SGMSKKQRNSALQKARSAQVQVLMLSPEALAGAGAAGLAFLTQLPPVAFA-C-----IDE 615
Query: 146 VHCCSSWGHDFRPDYQYLSILKTMFPDVPI---LGLTATATTKVMLDVQKMLQIEDCVVI 202
HC S W H+FRP Y L + K + V + LGLTATAT LDV + L + + V+
Sbjct: 616 AHCLSQWSHNFRPCY--LRVCKVLRERVGVSCFLGLTATATRSTALDVAQHLGVAEESVL 673
Query: 203 KAPFNRP-NLFYEVRIKPAAQKDCLDELADLM-SRRF-RNQSGIIYTTSIKECEDLREEL 259
+ P NL V + +D L L+ S RF S IIY ++ E + L
Sbjct: 674 RGQGTIPANLHLSVSM----DRDPDQALVTLLQSDRFCALDSIIIYCNRREDTERVAALL 729
Query: 260 R 260
R
Sbjct: 730 R 730
Score = 80 (33.2 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+G+D+P+VR V+H L S E++ Q
Sbjct: 780 TVAFGMGLDRPDVRAVLHLGLPPSFESYVQ 809
>UNIPROTKB|K7GSZ9 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
InterPro:IPR021110 Pfam:PF11719 EMBL:CU468594
Ensembl:ENSSSCT00000036186 Uniprot:K7GSZ9
Length = 1209
Score = 147 (56.8 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 60/181 (33%), Positives = 88/181 (48%)
Query: 91 TGKLLKKKKICLM-TESSSLKLLYVSPEKLAKSKS----FMTKLQKMYKAGCLARIAIDE 145
+G K++ L S+ +++L +SPE LA + + F+T+L + A C IDE
Sbjct: 567 SGMSKKQRNSALQKARSAQVQVLMLSPEALAGAGAAGLAFLTQLPPVAFA-C-----IDE 620
Query: 146 VHCCSSWGHDFRPDYQYLSILKTMFPDVPI---LGLTATATTKVMLDVQKMLQIEDCVVI 202
HC S W H+FRP Y L + K + V + LGLTATAT LDV + L + + V+
Sbjct: 621 AHCLSQWSHNFRPCY--LRVCKVLRERVGVSCFLGLTATATRSTALDVAQHLGVAEESVL 678
Query: 203 KAPFNRP-NLFYEVRIKPAAQKDCLDELADLM-SRRF-RNQSGIIYTTSIKECEDLREEL 259
+ P NL V + +D L L+ S RF S IIY ++ E + L
Sbjct: 679 RGQGTIPANLHLSVSM----DRDPDQALVTLLQSDRFCALDSIIIYCNRREDTERVAALL 734
Query: 260 R 260
R
Sbjct: 735 R 735
Score = 80 (33.2 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+G+D+P+VR V+H L S E++ Q
Sbjct: 785 TVAFGMGLDRPDVRAVLHLGLPPSFESYVQ 814
>UNIPROTKB|F1RV44 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0045875 "negative regulation of sister chromatid cohesion"
evidence=IEA] [GO:0043473 "pigmentation" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008284 GO:GO:0008270
GO:GO:0003676 GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0048705 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043473 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 GO:GO:0045875 InterPro:IPR021110 Pfam:PF11719
OMA:DMPEEAI EMBL:CU468594 Ensembl:ENSSSCT00000006463 Uniprot:F1RV44
Length = 1227
Score = 147 (56.8 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 60/181 (33%), Positives = 88/181 (48%)
Query: 91 TGKLLKKKKICLM-TESSSLKLLYVSPEKLAKSKS----FMTKLQKMYKAGCLARIAIDE 145
+G K++ L S+ +++L +SPE LA + + F+T+L + A C IDE
Sbjct: 585 SGMSKKQRNSALQKARSAQVQVLMLSPEALAGAGAAGLAFLTQLPPVAFA-C-----IDE 638
Query: 146 VHCCSSWGHDFRPDYQYLSILKTMFPDVPI---LGLTATATTKVMLDVQKMLQIEDCVVI 202
HC S W H+FRP Y L + K + V + LGLTATAT LDV + L + + V+
Sbjct: 639 AHCLSQWSHNFRPCY--LRVCKVLRERVGVSCFLGLTATATRSTALDVAQHLGVAEESVL 696
Query: 203 KAPFNRP-NLFYEVRIKPAAQKDCLDELADLM-SRRF-RNQSGIIYTTSIKECEDLREEL 259
+ P NL V + +D L L+ S RF S IIY ++ E + L
Sbjct: 697 RGQGTIPANLHLSVSM----DRDPDQALVTLLQSDRFCALDSIIIYCNRREDTERVAALL 752
Query: 260 R 260
R
Sbjct: 753 R 753
Score = 80 (33.2 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+G+D+P+VR V+H L S E++ Q
Sbjct: 803 TVAFGMGLDRPDVRAVLHLGLPPSFESYVQ 832
>UNIPROTKB|F8WA66 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 EMBL:AC006559 HGNC:HGNC:9948 ChiTaRS:RECQL
IPI:IPI01013557 ProteinModelPortal:F8WA66 SMR:F8WA66 PRIDE:F8WA66
Ensembl:ENST00000314748 ArrayExpress:F8WA66 Bgee:F8WA66
Uniprot:F8WA66
Length = 199
Score = 149 (57.5 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 39/127 (30%), Positives = 67/127 (52%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWS--DRVRSVLKS 61
++PWS +V+ +L++ F L FRP QL IN+ + K+ ++MPT S ++ ++
Sbjct: 72 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD 131
Query: 62 KFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKIC-----LMTESSSLKLLYVSP 116
F L L + +LK+ I K+ + ++ ++S LKL+YV+P
Sbjct: 132 GFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 191
Query: 117 EKLAKSK 123
EK+AKSK
Sbjct: 192 EKIAKSK 198
>MGI|MGI:1931028 [details] [associations]
symbol:Recql4 "RecQ protein-like 4" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000733 "DNA
strand renaturation" evidence=ISO] [GO:0001501 "skeletal system
development" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006260
"DNA replication" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0032508 "DNA duplex unwinding" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
[GO:0043473 "pigmentation" evidence=IMP] [GO:0045875 "negative
regulation of sister chromatid cohesion" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0048705 "skeletal system
morphogenesis" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 MGI:MGI:1931028 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0008284
GO:GO:0006260 GO:GO:0008270 GO:GO:0003676 GO:GO:0006310
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0048705 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043473 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
GO:GO:0045875 CTD:9401 HOGENOM:HOG000264957 HOVERGEN:HBG065925
KO:K10730 InterPro:IPR021110 Pfam:PF11719 EMBL:AB039882
EMBL:AB175741 EMBL:AB042529 IPI:IPI00119366 IPI:IPI00462416
RefSeq:NP_478121.2 UniGene:Mm.18373 ProteinModelPortal:Q75NR7
SMR:Q75NR7 IntAct:Q75NR7 STRING:Q75NR7 PhosphoSite:Q75NR7
PRIDE:Q75NR7 DNASU:79456 Ensembl:ENSMUST00000036852 GeneID:79456
KEGG:mmu:79456 UCSC:uc007wlv.1 OrthoDB:EOG4CJVGG NextBio:349927
Bgee:Q75NR7 CleanEx:MM_RECQL4 Genevestigator:Q75NR7
GermOnline:ENSMUSG00000033762 Uniprot:Q75NR7
Length = 1216
Score = 139 (54.0 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 60/201 (29%), Positives = 87/201 (43%)
Query: 96 KKKKICLMTESSSLKLLYVSPEKLAKSKSFMT-KLQKMYKAGCLARIAIDEVHCCSSWGH 154
+++ + ++ + +L VSPE L + L + + +A IDEVHC S W H
Sbjct: 578 QRESVLKKVRAAQVHVLIVSPEALVGCGARGPGSLPQAAQLPPIAFACIDEVHCLSQWSH 637
Query: 155 DFRPDYQYLSILKTMFPDVPI---LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRP-N 210
+FRP Y L + K + + + LGLTATAT DV + L I + N P N
Sbjct: 638 NFRPCY--LRVCKVLREHMGVRCFLGLTATATRSTARDVAQHLGIAGEFELSGSANIPAN 695
Query: 211 LFYEVRIKPAAQKDCLDELADLMSR-RFRN-QSGIIYTTS----------IKECEDLREE 258
L V + +D L L+ RFR S IIY T ++ C + +
Sbjct: 696 LHLSVSM----DRDSDQALVTLLQGDRFRTLDSVIIYCTRERIQNGWLALLRTCLSMVGD 751
Query: 259 LRNRGLR----VSAYHAKLES 275
R RG AYHA + S
Sbjct: 752 SRPRGCGPEAIAEAYHAGMSS 772
Score = 80 (33.2 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+G+D+P+VR V+H L S E++ Q
Sbjct: 793 TVAFGMGLDRPDVRAVLHLGLPPSFESYVQ 822
>UNIPROTKB|Q4JNX8 [details] [associations]
symbol:RTS "RECQL4-helicase-like protein" species:8355
"Xenopus laevis" [GO:0000785 "chromatin" evidence=IDA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0006270 "DNA replication
initiation" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0000785
GO:GO:0003682 GO:GO:0003676 GO:GO:0006270 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HOVERGEN:HBG065925 KO:K10730 InterPro:IPR021110
Pfam:PF11719 EMBL:DQ059311 RefSeq:NP_001089101.1 UniGene:Xl.86701
ProteinModelPortal:Q4JNX8 GeneID:733317 KEGG:xla:733317 CTD:733317
Uniprot:Q4JNX8
Length = 1500
Score = 132 (51.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 54/172 (31%), Positives = 78/172 (45%)
Query: 105 ESSSLKLLYVSPEKLAKSK-SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL 163
+ + +L +SPE L S + L + +A IDE HC S W H+FRP Y L
Sbjct: 816 KQGKVHVLLLSPEALVGGGFSGSSCLPPADQLPPVAFACIDEAHCVSEWSHNFRPCYLRL 875
Query: 164 -SILKTMFPDVPILGLTATATTKVMLDVQKMLQI--EDCVVIKAPFNRPNLFYEVRIKPA 220
+L+ +LGLTATAT DV L + E + ++ PNL V +
Sbjct: 876 CKVLRERLGVNCLLGLTATATRATAEDVAHHLGVSPEGGIPVRMASVPPNLHLSVSMD-- 933
Query: 221 AQKDCLDELADLMS-RRFRN-QSGIIYTTSIKECEDLREELRN--RGLRVSA 268
+D L L+ RF S I+Y T +E + + LR +G+ VSA
Sbjct: 934 RNRD--QALVTLLKGERFGCLDSVIVYCTRREETQRISALLRTSLQGVTVSA 983
Score = 81 (33.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 13/30 (43%), Positives = 24/30 (80%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+G+DK +VR +IH+ + K+ E++ Q
Sbjct: 1047 TVAFGMGLDKSDVRGIIHYNMPKNFESYVQ 1076
>UNIPROTKB|Q33DM4 [details] [associations]
symbol:recql4 "RecQ4 protein" species:8355 "Xenopus laevis"
[GO:0000785 "chromatin" evidence=IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IMP] [GO:0035563 "positive regulation of chromatin
binding" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0006260
GO:GO:0008270 GO:GO:0000785 GO:GO:0003682 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0035563 CTD:9401
HOVERGEN:HBG065925 KO:K10730 InterPro:IPR021110 Pfam:PF11719
EMBL:AB213025 RefSeq:NP_001089182.1 UniGene:Xl.51337
ProteinModelPortal:Q33DM4 GeneID:734225 KEGG:xla:734225
Xenbase:XB-GENE-997817 Uniprot:Q33DM4
Length = 1503
Score = 132 (51.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 54/172 (31%), Positives = 78/172 (45%)
Query: 105 ESSSLKLLYVSPEKLAKSK-SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYL 163
+ + +L +SPE L S + L + +A IDE HC S W H+FRP Y L
Sbjct: 819 KQGKVHVLLLSPEALVGGGFSGSSCLPPADQLPPVAFACIDEAHCVSEWSHNFRPCYLRL 878
Query: 164 -SILKTMFPDVPILGLTATATTKVMLDVQKMLQI--EDCVVIKAPFNRPNLFYEVRIKPA 220
+L+ +LGLTATAT DV L + E + ++ PNL V +
Sbjct: 879 CKVLRERLGVNCLLGLTATATRATAEDVAHHLGVSPEGGIPVRMASVPPNLHLSVSMD-- 936
Query: 221 AQKDCLDELADLMS-RRFRN-QSGIIYTTSIKECEDLREELRN--RGLRVSA 268
+D L L+ RF S I+Y T +E + + LR +G+ VSA
Sbjct: 937 RNRD--QALVTLLKGERFGCLDSVIVYCTRREETQRISALLRTSLQGVTVSA 986
Score = 81 (33.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 13/30 (43%), Positives = 24/30 (80%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+G+DK +VR +IH+ + K+ E++ Q
Sbjct: 1050 TVAFGMGLDKSDVRGIIHYNMPKNFESYVQ 1079
>UNIPROTKB|A5D786 [details] [associations]
symbol:RECQL4 "RECQL4 protein" species:9913 "Bos taurus"
[GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0045875 "negative regulation of sister chromatid cohesion"
evidence=IEA] [GO:0043473 "pigmentation" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0008284 GO:GO:0003676 GO:GO:0006310
GO:GO:0048705 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043473 eggNOG:COG0514 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 GO:GO:0045875 CTD:9401
HOGENOM:HOG000264957 HOVERGEN:HBG065925 KO:K10730
InterPro:IPR021110 Pfam:PF11719 OrthoDB:EOG4CJVGG EMBL:DAAA02037439
EMBL:BC140466 IPI:IPI00852560 RefSeq:NP_001091506.1
UniGene:Bt.27882 STRING:A5D786 Ensembl:ENSBTAT00000056581
GeneID:515472 KEGG:bta:515472 OMA:DMPEEAI NextBio:20871839
Uniprot:A5D786
Length = 1218
Score = 163 (62.4 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 73/261 (27%), Positives = 120/261 (45%)
Query: 65 LTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLM-TESSSLKLLYVSPEKL--AK 121
LT +QL+ + L K A I +G K++ L ++ +++L +SPE L A
Sbjct: 547 LTSLMDDQLSGLPPGL--KGACI--HSGMTKKQRDSALQKARAARVQVLMLSPEALVGAG 602
Query: 122 SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPI---LGL 178
+ + +++L + A CL DE HC S W H+FRP Y L + +T+ + + LGL
Sbjct: 603 ASTLLSQLPPVAFA-CL-----DEAHCLSQWSHNFRPCY--LRVCQTLRDQMGVHCFLGL 654
Query: 179 TATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM-SRRF 237
TATAT LDV L + + V++ P P+ + + ++ +D L L+ S RF
Sbjct: 655 TATATRSTALDVAWHLGVTEESVLRGPATIPD---NLHLSVSSDRDPDQALVTLLRSDRF 711
Query: 238 RNQ-SGIIYTTSIKECEDLREELRNR--GLRVSAYHAKLESNVSIAFGLGIDKPNVRFVI 294
R S IIY ++ E + LR + H + V+ A+ G+ R V
Sbjct: 712 RALGSVIIYCHRREDTERVAALLRTCLCDAQDPGPHGRALEAVAEAYHAGLCSRERRRV- 770
Query: 295 HHCLSKSMENFYQVSIAFGLG 315
+ ++AFG+G
Sbjct: 771 QRAFMEGRLRMVVATVAFGMG 791
>UNIPROTKB|Q47ZX4 [details] [associations]
symbol:CPS_2945 "Putative DEAD/DEAH box helicase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG0514 GO:GO:0008026 RefSeq:YP_269645.1
ProteinModelPortal:Q47ZX4 STRING:Q47ZX4 GeneID:3520230
KEGG:cps:CPS_2945 PATRIC:21468917 OMA:AFGVGMD
ProtClustDB:CLSK938184 BioCyc:CPSY167879:GI48-2994-MONOMER
Uniprot:Q47ZX4
Length = 843
Score = 115 (45.5 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 45/187 (24%), Positives = 84/187 (44%)
Query: 96 KKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHD 155
+K +I ++ K+++ SPE + + S + L ++ K +A I IDE H +WG +
Sbjct: 236 EKSEIRDNIDNDKQKVIFTSPESV--TGSLLPLLFRLAKQNSIANIIIDEAHLIDTWGSN 293
Query: 156 FRPDYQYLSILKTMFPDV---PILGLTATAT-TKVMLDVQKMLQIEDC---VVIKAPFNR 208
FR ++Q L V P + +AT T+ + L E +V+ F R
Sbjct: 294 FRSEFQRFGALVASLRQVSNSPFKTILMSATFTQSNIGSLTTLYCESDNKPIVVNGNFLR 353
Query: 209 PNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGL-RVS 267
P + K + + L + + + I+YTT +++ DL L+ GL R++
Sbjct: 354 PEI--SSSYKNEGENNHLQSVVGRVIALPKPL--ILYTTLVQDSIDLSCHLKAIGLNRIA 409
Query: 268 AYHAKLE 274
++ K +
Sbjct: 410 LFNGKTD 416
Score = 86 (35.3 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
AFG+G+DK NV+ VIH C+ +++ +YQ
Sbjct: 440 AFGVGMDKSNVKSVIHACIPDNIDRYYQ 467
>TIGR_CMR|CPS_2945 [details] [associations]
symbol:CPS_2945 "putative DEAD/DEAH box helicase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG0514 GO:GO:0008026 RefSeq:YP_269645.1
ProteinModelPortal:Q47ZX4 STRING:Q47ZX4 GeneID:3520230
KEGG:cps:CPS_2945 PATRIC:21468917 OMA:AFGVGMD
ProtClustDB:CLSK938184 BioCyc:CPSY167879:GI48-2994-MONOMER
Uniprot:Q47ZX4
Length = 843
Score = 115 (45.5 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 45/187 (24%), Positives = 84/187 (44%)
Query: 96 KKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHD 155
+K +I ++ K+++ SPE + + S + L ++ K +A I IDE H +WG +
Sbjct: 236 EKSEIRDNIDNDKQKVIFTSPESV--TGSLLPLLFRLAKQNSIANIIIDEAHLIDTWGSN 293
Query: 156 FRPDYQYLSILKTMFPDV---PILGLTATAT-TKVMLDVQKMLQIEDC---VVIKAPFNR 208
FR ++Q L V P + +AT T+ + L E +V+ F R
Sbjct: 294 FRSEFQRFGALVASLRQVSNSPFKTILMSATFTQSNIGSLTTLYCESDNKPIVVNGNFLR 353
Query: 209 PNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGL-RVS 267
P + K + + L + + + I+YTT +++ DL L+ GL R++
Sbjct: 354 PEI--SSSYKNEGENNHLQSVVGRVIALPKPL--ILYTTLVQDSIDLSCHLKAIGLNRIA 409
Query: 268 AYHAKLE 274
++ K +
Sbjct: 410 LFNGKTD 416
Score = 86 (35.3 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 280 AFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
AFG+G+DK NV+ VIH C+ +++ +YQ
Sbjct: 440 AFGVGMDKSNVKSVIHACIPDNIDRYYQ 467
>UNIPROTKB|E2RDN3 [details] [associations]
symbol:E2RDN3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00098 Pfam:PF00270 PROSITE:PS50158 SMART:SM00343
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 GO:GO:0008026
OMA:DMPEEAI EMBL:AAEX03008976 EMBL:AAEX03008977 EMBL:AAEX03008978
Ensembl:ENSCAFT00000002463 Uniprot:E2RDN3
Length = 1163
Score = 154 (59.3 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 48/163 (29%), Positives = 82/163 (50%)
Query: 87 IIMPTGKLLKKKKICLM-TESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDE 145
+ + +G K+++ L ++ ++LL +SPE L + + M + + +A IDE
Sbjct: 564 VCIHSGMSQKQRESALQKVHAAQVQLLVLSPETLVGAGAGMPG--HLPQLPPVAFACIDE 621
Query: 146 VHCCSSWGHDFRPDYQYLSILKTMFPDVPI---LGLTATATTKVMLDVQKMLQIEDCVVI 202
HC S W H+FRP Y L + K + + + LGLTATAT DV + L + + +V+
Sbjct: 622 AHCISQWSHNFRPCY--LRVCKVLREHMGVRCFLGLTATATRSTARDVARHLGVAEELVL 679
Query: 203 KAPFNRPNLFYEVRIKPAAQKDCLDELADLM-SRRFRNQSGII 244
+ P P+ + + + +D L L+ S RFR S +I
Sbjct: 680 RGPATVPS---NLHLSVSRDRDPDQALVTLLQSDRFRALSSVI 719
>UNIPROTKB|F5H2L2 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 GO:GO:0008026 EMBL:AC006559
HGNC:HGNC:9948 ChiTaRS:RECQL IPI:IPI01012611
ProteinModelPortal:F5H2L2 SMR:F5H2L2 Ensembl:ENST00000542432
ArrayExpress:F5H2L2 Bgee:F5H2L2 Uniprot:F5H2L2
Length = 131
Score = 123 (48.4 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 48 DYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTG 92
D+PWS +V+ +L++ F L FRP QL IN+ + K+ ++MPTG
Sbjct: 72 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTG 116
Score = 112 (44.5 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 4 NYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT 47
++PWS +V+ +L++ F L FRP QL IN+ + K+ ++MPT
Sbjct: 72 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPT 115
>RGD|1307732 [details] [associations]
symbol:Recql4 "RecQ protein-like 4" species:10116 "Rattus
norvegicus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0000733 "DNA strand renaturation" evidence=ISO] [GO:0001501
"skeletal system development" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISO]
[GO:0005575 "cellular_component" evidence=ND] [GO:0006260 "DNA
replication" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA;ISO] [GO:0032508
"DNA duplex unwinding" evidence=ISO] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=ISO] [GO:0043473
"pigmentation" evidence=IEA;ISO] [GO:0045875 "negative regulation
of sister chromatid cohesion" evidence=IEA;ISO] [GO:0048705
"skeletal system morphogenesis" evidence=IEA;ISO]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
RGD:1307732 GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 InterPro:IPR021110 Pfam:PF11719
IPI:IPI00366433 Ensembl:ENSRNOT00000045135 UCSC:RGD:1307732
ArrayExpress:D4A5W5 Uniprot:D4A5W5
Length = 1216
Score = 148 (57.2 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 62/229 (27%), Positives = 98/229 (42%)
Query: 96 KKKKICLMTESSSLKLLYVSPEKLAK-SKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGH 154
+++ + ++ + +L VSPE L L + +A IDEVHC S W H
Sbjct: 578 QRESVLKKVRAAQVHVLIVSPEALVGCGAKGPANLPPAAQLPPVAFACIDEVHCLSQWSH 637
Query: 155 DFRPDYQYLSILKTMFPDVPI---LGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRP-N 210
+FRP Y L + K + + + LGLTATAT DV + L I + + + + P N
Sbjct: 638 NFRPCY--LRVCKVLREHMGVRCFLGLTATATRSTARDVAQHLGIAEELEVSGSASIPAN 695
Query: 211 LFYEVRIKPAAQKDCLDELADLMSR-RFRN-QSGIIYTTSIKECEDLREELRN--RGLRV 266
L V + +D L L+ RFR S IIY K+ E + LR +R
Sbjct: 696 LHLSVSM----DRDSDQALVTLLQGDRFRTLDSIIIYCARRKDTERVAALLRTCLSTVRD 751
Query: 267 SAYHAKLESNVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLG 315
S + ++ A+ G+ R + + ++AFG+G
Sbjct: 752 SKPRGRGPETLAEAYHAGMCSQE-RKRVQQAFMQGHLRMVVATVAFGMG 799
>UNIPROTKB|H9KZS5 [details] [associations]
symbol:H9KZS5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0043473 "pigmentation"
evidence=IEA] [GO:0045875 "negative regulation of sister chromatid
cohesion" evidence=IEA] [GO:0048705 "skeletal system morphogenesis"
evidence=IEA] InterPro:IPR001650 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
InterPro:IPR014001 PROSITE:PS51192 GeneTree:ENSGT00550000074520
EMBL:AADN02044351 EMBL:AADN02044352 EMBL:AADN02044353
Ensembl:ENSGALT00000018179 OMA:CATREST Uniprot:H9KZS5
Length = 252
Score = 81 (33.6 bits), Expect = 5.8e-07, Sum P(3) = 5.8e-07
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 143 IDEVHCCSSWGHDFRPDYQYLSILKTMFP 171
IDE HC S W H+FRP Y L + + P
Sbjct: 4 IDEAHCISEWSHNFRPSYLRLCKVCEVLP 32
Score = 78 (32.5 bits), Expect = 5.8e-07, Sum P(3) = 5.8e-07
Identities = 12/30 (40%), Positives = 24/30 (80%)
Query: 278 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
++AFG+G+DK +VR V+H+ + ++ E++ Q
Sbjct: 202 TVAFGMGLDKADVRAVLHYNMPRNFESYVQ 231
Score = 56 (24.8 bits), Expect = 5.8e-07, Sum P(3) = 5.8e-07
Identities = 26/75 (34%), Positives = 35/75 (46%)
Query: 176 LGLTATATTKVMLDVQKMLQI--EDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLM 233
L LTATAT DV L I +D + ++ PNL V ++ + L L L
Sbjct: 61 LALTATATVATARDVAAHLGIPQQDGIAVQCAAVPPNLQLSVSVEWDRDR-ALVNL--LR 117
Query: 234 SRRF-RNQSGIIYTT 247
S RF +S I+Y T
Sbjct: 118 SERFVALRSIIVYCT 132
>UNIPROTKB|O94761 [details] [associations]
symbol:RECQL4 "ATP-dependent DNA helicase Q4" species:9606
"Homo sapiens" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0032508
"DNA duplex unwinding" evidence=IDA] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IMP] [GO:0000733 "DNA strand
renaturation" evidence=IDA] [GO:0000405 "bubble DNA binding"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0006260
"DNA replication" evidence=IDA] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0007275 "multicellular organismal development"
evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0007275 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000405
EMBL:AB006532 EMBL:AB026546 EMBL:DQ176868 EMBL:BC011602
EMBL:BC013277 IPI:IPI00014925 RefSeq:NP_004251.3 UniGene:Hs.31442
PDB:2KMU PDBsum:2KMU ProteinModelPortal:O94761 SMR:O94761
DIP:DIP-48475N IntAct:O94761 MINT:MINT-1432307 STRING:O94761
PhosphoSite:O94761 PaxDb:O94761 PRIDE:O94761 GeneID:9401
KEGG:hsa:9401 UCSC:uc003zdj.3 CTD:9401 GeneCards:GC08M145738
HGNC:HGNC:9949 MIM:218600 MIM:266280 MIM:268400 MIM:603780
neXtProt:NX_O94761 Orphanet:1225 Orphanet:3021 Orphanet:221016
PharmGKB:PA34316 HOGENOM:HOG000264957 HOVERGEN:HBG065925
InParanoid:O94761 KO:K10730 EvolutionaryTrace:O94761
GenomeRNAi:9401 NextBio:35219 CleanEx:HS_RECQL4
Genevestigator:O94761 GermOnline:ENSG00000160957 InterPro:IPR021110
Pfam:PF11719 Uniprot:O94761
Length = 1208
Score = 139 (54.0 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 57/231 (24%), Positives = 96/231 (41%)
Query: 91 TGKLLKKKKICLMT-ESSSLKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCC 149
+G K+++ L ++ + +L ++PE L + Q +A IDE HC
Sbjct: 555 SGMTRKQRESVLQKIRAAQVHVLMLTPEALVGAGGLPPAAQ----LPPVAFACIDEAHCL 610
Query: 150 SSWGHDFRPDY-QYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNR 208
S W H+FRP Y + +L+ LGLTATAT + DV + L + + + P
Sbjct: 611 SQWSHNFRPCYLRVCKVLRERMGVHCFLGLTATATRRTASDVAQHLAVAEEPDLHGPAPV 670
Query: 209 PNLFYEVRIKPAAQKDCLDELADLMS-RRFRN-QSGIIYTTSIKECEDLREELRN--RGL 264
P + + + +D L L+ +RF+N S IIY ++ E + LR
Sbjct: 671 PT---NLHLSVSMDRDTDQALLTLLQGKRFQNLDSIIIYCNRREDTERIAALLRTCLHAA 727
Query: 265 RVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGLG 315
V + + A+ G+ R V + ++AFG+G
Sbjct: 728 WVPGSGGRAPKTTAEAYHAGMCSRERRRV-QRAFMQGQLRVVVATVAFGMG 777
>UNIPROTKB|J3KRM6 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5 Ensembl:ENST00000582464
Uniprot:J3KRM6
Length = 118
Score = 96 (38.9 bits), Expect = 0.00029, P = 0.00029
Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 281 FGLGIDKPNVRFVIHHCLSKSMENFYQVSIAFGL-GKHSFRSRY 323
FG+G+DK NVRFV H ++KSM +YQ S G GK S+ Y
Sbjct: 2 FGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLY 45
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.137 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 323 323 0.00086 116 3 11 22 0.47 33
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 99
No. of states in DFA: 609 (65 KB)
Total size of DFA: 209 KB (2115 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.44u 0.13s 27.57t Elapsed: 00:00:02
Total cpu time: 27.46u 0.14s 27.60t Elapsed: 00:00:02
Start: Thu Aug 15 13:17:28 2013 End: Thu Aug 15 13:17:30 2013