RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4493
(323 letters)
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 97.8 bits (242), Expect = 6e-25
Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 10/201 (4%)
Query: 6 PWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT-----DYPWSDRVRSVLK 60
+ VL+ F FRP Q I+ L +D +++MPT +
Sbjct: 8 NLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGL 67
Query: 61 SKFNLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLA 120
+ + + A + T ++ ++ + ++LLY++PE+L
Sbjct: 68 TVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLM 127
Query: 121 KSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTA 180
+ +A+DE HC S WGHDFRP+Y L L+ FP +P + LTA
Sbjct: 128 LDNFL-----EHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTA 182
Query: 181 TATTKVMLDVQKMLQIEDCVV 201
TA D+ ++L + D ++
Sbjct: 183 TADDTTRQDIVRLLGLNDPLI 203
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 50.3 bits (119), Expect = 1e-07
Identities = 35/209 (16%), Positives = 58/209 (27%), Gaps = 32/209 (15%)
Query: 73 LAAINIALLKKDAIIIM-PT-------GKLLKKKKICLMTESSSLKLLYVSPEKLAKSKS 124
A + A+ + +I+ PT + L+ I T + + L +
Sbjct: 28 PAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRYQTPAIRAEHTGREIVDLMCHAT 87
Query: 125 FMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATT 184
F +L + I +DE H R + T G+ TAT
Sbjct: 88 FTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARG------YISTRVEMGEAAGIFMTATP 141
Query: 185 KVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGII 244
N P + E I + + + D +
Sbjct: 142 ------------PGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTD------FKGKTVW 183
Query: 245 YTTSIKECEDLREELRNRGLRVSAYHAKL 273
+ SIK D+ LR G +V K
Sbjct: 184 FVPSIKAGNDIAACLRKNGKKVIQLSRKT 212
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 48.8 bits (116), Expect = 3e-07
Identities = 16/131 (12%), Positives = 34/131 (25%), Gaps = 34/131 (25%)
Query: 208 RPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVS 267
PN+ + + L + +I+ S K+C++L +L G+
Sbjct: 8 HPNIEEVALSTTG-EIPFYGKAIPL--EVIKGGRHLIFCHSKKKCDELAAKLVALGINAV 64
Query: 268 AYHAKLE-------------------------------SNVSIAFGLGIDKPNVRFVIHH 296
AY+ L+ N + + +
Sbjct: 65 AYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETT 124
Query: 297 CLSKSMENFYQ 307
L + + Q
Sbjct: 125 TLPQDAVSRTQ 135
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 47.3 bits (111), Expect = 4e-07
Identities = 43/121 (35%), Positives = 68/121 (56%), Gaps = 23/121 (19%)
Query: 206 FNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLR 265
F+RPN+ Y + K LD+L + + R +SGIIY S + ED L+++G+
Sbjct: 2 FDRPNIRYMLMEK----FKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGIS 56
Query: 266 VSAYHAKLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
+AYHA LE+N ++AFG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 57 AAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQ 116
Query: 308 V 308
Sbjct: 117 E 117
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 45.7 bits (107), Expect = 1e-06
Identities = 26/178 (14%), Positives = 51/178 (28%), Gaps = 11/178 (6%)
Query: 8 SDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPT----DYPWSDRVRSVLKSKF 63
S +LK + + + P Q A+ K+ ++ MPT +
Sbjct: 11 SSYAVGILKEE-GIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGG 69
Query: 64 NLTDFRPNQLAAINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSK 123
P + A K I + ++ + EK
Sbjct: 70 KSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLI 129
Query: 124 SFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
K +DE+H S + ++ ++ M + ++GL+AT
Sbjct: 130 RNRASWIKAVSCLV-----VDEIHLLDSEKRGATLEI-LVTKMRRMNKALRVIGLSAT 181
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 43.2 bits (101), Expect = 5e-06
Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 17/115 (14%)
Query: 207 NRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRV 266
PN+ + + L + +I+ S K+C++L +L G+
Sbjct: 6 PHPNIEEVALSTTG-EIPFYGKAIPL--EVIKGGRHLIFCHSKKKCDELAAKLVALGINA 62
Query: 267 SAYHAKLESN-----------VSIAFGLGIDKPN---VRFVIHHCLSKSMENFYQ 307
AY+ L+ + + A G + + + Q
Sbjct: 63 VAYYRGLDVSVIPTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQ 117
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 36.4 bits (83), Expect = 0.002
Identities = 27/203 (13%), Positives = 53/203 (26%), Gaps = 40/203 (19%)
Query: 2 LPNYPWSDRVRSVLKSKFNLTDFRPNQLAAINIALLKKDAIIIMPTDYPWSDRVRSVLKS 61
+P+ + R + +R A + + + D + +
Sbjct: 19 VPHAKFDSRSGT----------YRAL---AFRYRDIIEY---FESNGIEFVDNAADPIPT 62
Query: 62 KFNLTDF--RPNQLAAINIALLKKDAIIIMPTG-----------KLLKKKKICLMTESSS 108
+ + R Q A+ L+ K I++PTG L + ++ +
Sbjct: 63 PYFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLAL 122
Query: 109 LKLLYVSPEKLAKSKSFMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFR----------P 158
+ + + G+ F P
Sbjct: 123 AEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLP 182
Query: 159 DYQYLSILKTMFPDVPILGLTAT 181
Y+ I + M LGLTAT
Sbjct: 183 AESYVQIAQ-MSIAPFRLGLTAT 204
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 36.0 bits (82), Expect = 0.004
Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 26/110 (23%)
Query: 224 DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSI---- 279
D L E+ +R +N I++T + + + EL G++ + +
Sbjct: 146 DKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQ 205
Query: 280 ----------------------AFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
G+D P V V+ + S Q
Sbjct: 206 REQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQ 255
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 32.4 bits (73), Expect = 0.050
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 19/93 (20%)
Query: 220 AAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRG-------LRVSAYHAK 272
A + + L+ ++ + GIIY + +E E++ E L+N+ + Y
Sbjct: 8 AVNDESISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATKKGDYEKF 65
Query: 273 LESNVSI---------AFGLGIDKP-NVRFVIH 295
+E + G+D P +RF +
Sbjct: 66 VEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVF 98
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 31.3 bits (69), Expect = 0.11
Identities = 23/197 (11%), Positives = 55/197 (27%), Gaps = 12/197 (6%)
Query: 20 NLTDFRPNQLAAINIALLKKDAIIIMPTDY-----PWSDRVRSVLKSKFNLTDFRPNQLA 74
+L R Q + + +I++PT + K + P +
Sbjct: 6 DLIQPRIYQEVIYA-KCKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPL 64
Query: 75 AINIALLKKDAIIIMPTGKLLKKKKICLMTESSSLKLLYVSPEKLAKSKSFMTKLQKMYK 134
+ A + + P + + S + V ++ + + +
Sbjct: 65 VLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLE 124
Query: 135 AGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKML 194
I DE H K + ++GLTA+ + ++ +
Sbjct: 125 DVS--LIVFDEAHRAV----GNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVIN 178
Query: 195 QIEDCVVIKAPFNRPNL 211
+ + N P++
Sbjct: 179 NLGIEHIEYRSENSPDV 195
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54
(NtrC1), N-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 137
Score = 30.0 bits (67), Expect = 0.18
Identities = 13/112 (11%), Positives = 35/112 (31%), Gaps = 21/112 (18%)
Query: 147 HCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPF 206
+ L +K P+ ++ +T T K + +++ + P
Sbjct: 47 VVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIK---TAVEAMKMGAYDFLTKPC 103
Query: 207 NRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREE 258
L+E+ +++ ++ ++ +DL+EE
Sbjct: 104 M------------------LEEIELTINKAIEHRKLRKENELLRREKDLKEE 137
>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 44
Score = 27.3 bits (61), Expect = 0.32
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 254 DLREELRNRGLRVSAYHAKL 273
L++ L R L V +L
Sbjct: 12 QLKDLLTKRNLSVGGLKNEL 31
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 29.5 bits (65), Expect = 0.35
Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 14/109 (12%)
Query: 212 FYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECE-------------DLREE 258
+ E R K+ + +L +++ R R II+T + E
Sbjct: 67 WEEARRIAFNSKNKIRKLREIL-ERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSRE 125
Query: 259 LRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 307
R L S GID P+ + S S + Q
Sbjct: 126 EREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQ 174
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 29.3 bits (64), Expect = 0.36
Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 125 FMTKLQKMYKAGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTAT 181
++ + + I +DE H R + + + + +TAT
Sbjct: 86 LTYRMLEPTRVVNWEVIIMDEAHFLDPASIAAR----GWAAHRARANESATILMTAT 138
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 27.8 bits (61), Expect = 1.1
Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 21/106 (19%)
Query: 214 EVRIKPAA-QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 272
+ ++P Q D D + ++ R RN+ ++ T + K EDL + L+ G++V+ H++
Sbjct: 7 TIDVRPTKGQID--DLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSE 64
Query: 273 L---------------ESNVSIAFGL---GIDKPNVRFVIHHCLSK 300
+ + +V + L G+D P V V K
Sbjct: 65 IKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADK 110
>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus
halodurans [TaxId: 86665]}
Length = 118
Score = 27.2 bits (60), Expect = 1.2
Identities = 13/81 (16%), Positives = 22/81 (27%), Gaps = 13/81 (16%)
Query: 141 IAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCV 200
+ I L I+K +L LT + + +
Sbjct: 50 LLIVSDQLVDLSIFSL------LDIVKEQTKQPSVLILTTGRHELI-----ESSEHNLSY 98
Query: 201 VIKAPFNRPNLFYEV-RIKPA 220
+ K PF L + KP+
Sbjct: 99 LQK-PFAISELRAAIDYHKPS 118
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein
ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 121
Score = 27.3 bits (60), Expect = 1.3
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 3/82 (3%)
Query: 135 AGCLARIAIDEVHCCSSWGHDFRPDYQYLSILKTMFPDVPILGLTATATTKVMLDVQKML 194
A ++ +++ + + L+ +V ++ LT D L
Sbjct: 36 AEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRDNEV---DKILGL 92
Query: 195 QIEDCVVIKAPFNRPNLFYEVR 216
+I I PFN L R
Sbjct: 93 EIGADDYITKPFNPRELTIRAR 114
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein
U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 24.9 bits (55), Expect = 2.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 254 DLREELRNRGLRVSAYHAKL 273
+LREEL+ RGL A+L
Sbjct: 10 ELREELQRRGLDTRGLKAEL 29
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR,
C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Length = 70
Score = 25.0 bits (55), Expect = 3.0
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 250 KECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHCLSK 300
+ E L L R +V + N IA LGI + V+ H+ + K
Sbjct: 4 DQLEQLFSSLTGREQQVLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQK 54
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 26.8 bits (58), Expect = 3.4
Identities = 3/54 (5%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 212 FYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLR 265
++ + + + + + ++ N +++ ++ + E +L +
Sbjct: 16 LFDGAFSTSRRVKFEELVEECVAE---NGGVLVFESTRRGAEKTAVKLSAITAK 66
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator
(NarL) {Escherichia coli [TaxId: 562]}
Length = 67
Score = 25.1 bits (55), Expect = 3.5
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 257 EELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHCLSK 300
+L R + A+ N IA L I + V+ + H L K
Sbjct: 5 NQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKK 48
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70
{Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 24.2 bits (53), Expect = 4.7
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 254 DLREELRNRGLRVS 267
L+E R GL+
Sbjct: 22 MLKEACRAYGLKSG 35
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F
{Bacillus subtilis [TaxId: 1423]}
Length = 119
Score = 25.7 bits (56), Expect = 5.1
Identities = 8/57 (14%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 160 YQYLSILKTMFPDVPILGLTATATTKVMLDVQKMLQIEDCVVIKAPFNRPNLFYEVR 216
+ L +K + ++ ++ +TA +Q+ ++ PF+ + V+
Sbjct: 61 IEILKRMKVIDENIRVIIMTAYGELD---MIQESKELGALTHFAKPFDIDEIRDAVK 114
>d2guka1 d.360.1.1 (A:4-114) Hypothetical protein PG1857
{Porphyromonas gingivalis [TaxId: 837]}
Length = 111
Score = 25.1 bits (55), Expect = 5.6
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 243 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFG 282
++ T + + E LR+R + A ++ FG
Sbjct: 25 VLATLANDDIPYAEERLRSRQIPYFAQPTPNTERTNLFFG 64
>d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester
phosphodiesterase TTHB141 {Thermus thermophilus [TaxId:
274]}
Length = 217
Score = 25.7 bits (55), Expect = 7.7
Identities = 24/153 (15%), Positives = 40/153 (26%), Gaps = 4/153 (2%)
Query: 137 CLARIAIDEVHCCS-SWGHDFRPDYQYLSILKTMFPDV--PILGLTATATTKVMLDVQKM 193
+ +V P + + LK FP + + +
Sbjct: 51 DTPLGPVFQVDYADLKAQEPDLPRLEEVLALKEAFPQAVFNVELKSFPGLGEEAARRLAA 110
Query: 194 LQIEDCVVIKAPFNRPNLFYEVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECE 253
L V + F+ L + P L D + ++ E
Sbjct: 111 LLRGREGVWVSSFDPLALLALRKAAPGLPLGFLMA-EDHSALLPCLGVEAVHPHHALVTE 169
Query: 254 DLREELRNRGLRVSAYHAKLESNVSIAFGLGID 286
+ R RGL V A+ E LG+D
Sbjct: 170 EAVAGWRKRGLFVVAWTVNEEGEARRLLALGLD 202
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.137 0.405
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,207,819
Number of extensions: 55887
Number of successful extensions: 247
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 36
Length of query: 323
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,240,546
Effective search space: 295249948
Effective search space used: 295249948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.5 bits)