BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4494
(234 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9TXJ8|RECQ1_CAEEL Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis elegans
GN=K02F3.12 PE=3 SV=3
Length = 631
Score = 201 bits (510), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 135/224 (60%), Gaps = 32/224 (14%)
Query: 20 QVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSG 79
Q ++ F G ++ N++ Y+V KP ++ +C +E+A + R F Q+G
Sbjct: 290 QAALTFRAGFNRSNLK--------------YKVVQKPGSEDECTEEIAKTIKRDFAGQTG 335
Query: 80 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLG 121
IIY S +CE + + L++ G++ YHA +E ++AFG+G
Sbjct: 336 IIYCLSRNDCEKVAKALKSHGIKAKHYHAYMEPVDRSGAHQGWISGKIQVIVATVAFGMG 395
Query: 122 IDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVFDQQTGL 181
IDKPNVRFVIHH L KS+EN+YQESGRAGRDGQ A CILYYRL D+FK SSMV ++TG+
Sbjct: 396 IDKPNVRFVIHHSLPKSIENYYQESGRAGRDGQPATCILYYRLADIFKQSSMVQQERTGI 455
Query: 182 ANLYNIVSYCLDQTRCRRAIIASYFDEAWSDTECRGMCDHCRGG 225
NLYN+V Y D + CRR +A +F+EAW + C+ CD C G
Sbjct: 456 QNLYNMVRYAADSSTCRRVKLAEHFEEAWEPSWCQKQCDTCENG 499
>sp|A8WK63|RECQ1_CAEBR Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis briggsae
GN=CBG24191 PE=3 SV=1
Length = 618
Score = 193 bits (491), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 132/220 (60%), Gaps = 32/220 (14%)
Query: 21 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGI 80
V+I F G ++ N+ Y+V KP ++ +C++++ + R+F ++GI
Sbjct: 268 VAIVFRAGFNRANLN--------------YKVLTKPGSEDECVEKIVRTIKRKFSGKTGI 313
Query: 81 IYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGI 122
IY S +CE L + L+ G+R YHA +E ++AFG+GI
Sbjct: 314 IYCLSRNDCEKLAKSLKANGIRAKHYHAYMEPVDRSAAHQKWVSGEIQVIVATVAFGMGI 373
Query: 123 DKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVFDQQTGLA 182
DKP+VRFVIHH L KS+EN+YQESGRAGRDG A CILYYR+ D+FK SSM+ +QTG+A
Sbjct: 374 DKPDVRFVIHHSLPKSIENYYQESGRAGRDGLPATCILYYRMSDIFKQSSMIQQEQTGIA 433
Query: 183 NLYNIVSYCLDQTRCRRAIIASYFDEAWSDTECRGMCDHC 222
NLYN+V Y D CRR +A +F+EAW + C+ CD C
Sbjct: 434 NLYNMVRYASDTVTCRRVKLAEHFEEAWEPSWCQKQCDVC 473
>sp|Q5RF63|RECQ1_PONAB ATP-dependent DNA helicase Q1 OS=Pongo abelii GN=RECQL PE=2 SV=1
Length = 649
Score = 192 bits (488), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/192 (46%), Positives = 124/192 (64%), Gaps = 18/192 (9%)
Query: 49 FYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA 108
+Y+VR KP+ +D ++++ L++ R++ QSGIIY S K+ E + LRN G+ AYHA
Sbjct: 287 YYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLRNLGIHAGAYHA 346
Query: 109 KLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAG 150
LE ++AFG+GIDKP+VRFVIHH +SKSMEN+YQESGRAG
Sbjct: 347 NLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
Query: 151 RDGQIAHCILYYRLPDVFKLSSMVFDQQTGLANLYNIVSYCLDQTRCRRAIIASYFDEAW 210
RD A CILYY D+F++SSMV + G LY +VSYC + ++CRR ++A +FDE W
Sbjct: 407 RDDMKADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYCQNISKCRRLLMAQHFDEVW 466
Query: 211 SDTECRGMCDHC 222
+ C MCD+C
Sbjct: 467 NSEACNKMCDNC 478
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 33/41 (80%), Gaps = 3/41 (7%)
Query: 14 WRTSFYQV---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
W + QV ++AFG+GIDKP+VRFVIHH +SKSMEN+YQ
Sbjct: 360 WSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQ 400
>sp|P46063|RECQ1_HUMAN ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3
Length = 649
Score = 191 bits (485), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 89/192 (46%), Positives = 124/192 (64%), Gaps = 18/192 (9%)
Query: 49 FYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA 108
+Y+VR KP+ +D ++++ L++ R++ QSGIIY S K+ E + L+N G+ AYHA
Sbjct: 287 YYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHA 346
Query: 109 KLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAG 150
LE ++AFG+GIDKP+VRFVIHH +SKSMEN+YQESGRAG
Sbjct: 347 NLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
Query: 151 RDGQIAHCILYYRLPDVFKLSSMVFDQQTGLANLYNIVSYCLDQTRCRRAIIASYFDEAW 210
RD A CILYY D+F++SSMV + G LY +VSYC + ++CRR ++A +FDE W
Sbjct: 407 RDDMKADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYCQNISKCRRVLMAQHFDEVW 466
Query: 211 SDTECRGMCDHC 222
+ C MCD+C
Sbjct: 467 NSEACNKMCDNC 478
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 33/41 (80%), Gaps = 3/41 (7%)
Query: 14 WRTSFYQV---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
W + QV ++AFG+GIDKP+VRFVIHH +SKSMEN+YQ
Sbjct: 360 WSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQ 400
>sp|Q6AYJ1|RECQ1_RAT ATP-dependent DNA helicase Q1 OS=Rattus norvegicus GN=Recql PE=2
SV=1
Length = 621
Score = 189 bits (481), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 89/192 (46%), Positives = 126/192 (65%), Gaps = 18/192 (9%)
Query: 49 FYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA 108
+Y+VR KP++ +D ++ +A+L++ R++ +SGIIY S K+ E + L+ G+R YHA
Sbjct: 287 YYEVRQKPSSAEDFIENIANLINGRYKGKSGIIYCFSQKDSEQVTISLQKLGVRAGTYHA 346
Query: 109 KLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAG 150
+E ++AFG+GIDKP+VRFVIHH +SKSMEN+YQESGRAG
Sbjct: 347 NMEPEDRTKVHTQWSANELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
Query: 151 RDGQIAHCILYYRLPDVFKLSSMVFDQQTGLANLYNIVSYCLDQTRCRRAIIASYFDEAW 210
RD A CILYY D+F++SSMV + G LY +VSYC + ++CRRA+IA +FDE W
Sbjct: 407 RDDWRADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYCQNISKCRRALIAQHFDEVW 466
Query: 211 SDTECRGMCDHC 222
+ C MCD+C
Sbjct: 467 NADACNKMCDNC 478
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 33/41 (80%), Gaps = 3/41 (7%)
Query: 14 WRTSFYQV---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
W + QV ++AFG+GIDKP+VRFVIHH +SKSMEN+YQ
Sbjct: 360 WSANELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQ 400
>sp|Q9Z129|RECQ1_MOUSE ATP-dependent DNA helicase Q1 OS=Mus musculus GN=Recql PE=1 SV=2
Length = 648
Score = 188 bits (478), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 88/192 (45%), Positives = 122/192 (63%), Gaps = 18/192 (9%)
Query: 49 FYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA 108
FY+VR KP++ +D +++ L++ R++ QSGIIY S K+ E + L+ G+ YHA
Sbjct: 287 FYEVRQKPSSAEDFTEDIVKLINGRYKGQSGIIYCFSQKDSEQITISLQKLGIHAGTYHA 346
Query: 109 KLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAG 150
+E ++AFG+GIDKP+VRFVIHH +SKSMEN+YQESGRAG
Sbjct: 347 NMEPEDKTKVHTQWSANELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 406
Query: 151 RDGQIAHCILYYRLPDVFKLSSMVFDQQTGLANLYNIVSYCLDQTRCRRAIIASYFDEAW 210
RD A CILYY D+F++SSMV + G LY +VSYC + ++CRR +IA +FDE W
Sbjct: 407 RDDSRADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYCQNVSKCRRVLIAQHFDEVW 466
Query: 211 SDTECRGMCDHC 222
+ C MCD+C
Sbjct: 467 NADACNKMCDNC 478
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 33/41 (80%), Gaps = 3/41 (7%)
Query: 14 WRTSFYQV---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
W + QV ++AFG+GIDKP+VRFVIHH +SKSMEN+YQ
Sbjct: 360 WSANELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQ 400
>sp|Q9FT73|MED34_ARATH Mediator of RNA polymerase II transcription subunit 34
OS=Arabidopsis thaliana GN=MED34 PE=1 SV=1
Length = 705
Score = 182 bits (463), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 137/231 (59%), Gaps = 36/231 (15%)
Query: 23 IAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRF-RNQSGII 81
+ F +++PN+ FY VR K A K +DE+A+ + + N+SGI+
Sbjct: 273 VKFVSSVNRPNL--------------FYSVREKSAVGKLVVDEIAEFIRESYSNNESGIV 318
Query: 82 YTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGID 123
Y S KECE + +LR RG+ YHA +++N+ ++AFG+GI+
Sbjct: 319 YCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMGIN 378
Query: 124 KPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVFDQQTGLAN 183
KP+VRFVIHH LSKSME +YQESGRAGRDG + CIL++R DV + SSMVF + +GL N
Sbjct: 379 KPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSADVPRQSSMVFYEYSGLQN 438
Query: 184 LYNIVSYCLDQTRCRRAIIASYFDEAWSDTECRGMCDHCRGGRRDAKRVDV 234
LY+IV YC +T+CRR+ +F E D C GMCD+C + K VDV
Sbjct: 439 LYDIVRYCQSKTKCRRSAFFRHFGEPSQD--CNGMCDNC-ALSSEVKEVDV 486
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 32/41 (78%), Gaps = 3/41 (7%)
Query: 14 WRTSFYQV---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
W + QV ++AFG+GI+KP+VRFVIHH LSKSME +YQ
Sbjct: 359 WSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQ 399
>sp|P35187|SGS1_YEAST ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SGS1 PE=1 SV=1
Length = 1447
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 114/203 (56%), Gaps = 29/203 (14%)
Query: 49 FYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA 108
+Y+V K K+ + E+ D + RF+NQ+GIIY S K CE +++ G++ + YHA
Sbjct: 876 YYEVNKK---TKNTIFEICDAVKSRFKNQTGIIYCHSKKSCEQTSAQMQRNGIKCAYYHA 932
Query: 109 KLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAG 150
+E + ++AFG+GIDKP+VRFV H + +++E +YQE+GRAG
Sbjct: 933 GMEPDERLSVQKAWQADEIQVICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAG 992
Query: 151 RDGQIAHCILYYRLPDVFKLSSMV--------FDQQTGLANLYNIVSYCLDQTRCRRAII 202
RDG ++CI Y+ D+ + +M+ +++ L L +++YC + T CRR ++
Sbjct: 993 RDGNYSYCITYFSFRDIRTMQTMIQKDKNLDRENKEKHLNKLQQVMAYCDNVTDCRRKLV 1052
Query: 203 ASYFDEAWSDTECRGMCDHCRGG 225
SYF+E + C CD+CR
Sbjct: 1053 LSYFNEDFDSKLCHKNCDNCRNS 1075
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 14 WRTSFYQV---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
W+ QV ++AFG+GIDKP+VRFV H + +++E +YQ
Sbjct: 946 WQADEIQVICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQ 986
>sp|Q9VGI8|BLM_DROME Bloom syndrome protein homolog OS=Drosophila melanogaster GN=mus309
PE=1 SV=1
Length = 1487
Score = 134 bits (337), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 114/213 (53%), Gaps = 33/213 (15%)
Query: 53 RIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES 112
R+ P LD+++ + + ++ SGIIY S KEC++ +++ G+R +YHA L
Sbjct: 935 RVLPKKGVSTLDDISRYIRSKPQHFSGIIYCLSRKECDETSKKMCKDGVRAVSYHAGLTD 994
Query: 113 N------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQ 154
++AFG+GIDKP+VRFV+H+ L KS+E +YQE+GRAGRDG
Sbjct: 995 TDRESRQKDWLTGKMRVICATVAFGMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGD 1054
Query: 155 IAHCILYYRLPDVFKLSSMVFDQQTGLA---------NLYNIVSYCLDQTRCRRAIIASY 205
+A CILYY D+ ++ M+ D L NLY IV YC + T CRRA Y
Sbjct: 1055 VADCILYYNYSDMLRIKKML-DSDKALQYNVKKIHVDNLYRIVGYCENLTDCRRAQQLDY 1113
Query: 206 FDEAWSDTEC----RGMCDHCRGGRRDAKRVDV 234
F E ++ +C CD+C +R K VD
Sbjct: 1114 FGEHFTSEQCLENRETACDNCI-NKRAYKAVDA 1145
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 31/41 (75%), Gaps = 3/41 (7%)
Query: 14 WRTSFYQV---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
W T +V ++AFG+GIDKP+VRFV+H+ L KS+E +YQ
Sbjct: 1004 WLTGKMRVICATVAFGMGIDKPDVRFVLHYSLPKSIEGYYQ 1044
>sp|O88700|BLM_MOUSE Bloom syndrome protein homolog OS=Mus musculus GN=Blm PE=1 SV=1
Length = 1416
Score = 133 bits (334), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 102/177 (57%), Gaps = 32/177 (18%)
Query: 78 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------------------SIAF 118
SGIIY S +EC+ + + L+ GL AYHA L + +IAF
Sbjct: 898 SGIIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAF 957
Query: 119 GLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVF--- 175
G+GIDKP+VRFVIH L KSME +YQESGRAGRDG+I+HC+L+Y DV +L ++
Sbjct: 958 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEK 1017
Query: 176 -----DQQTGLANLYNIVSYCLDQTRCRRAIIASYFDEAWSDTE-CRG----MCDHC 222
++T + NLY++V YC + T CRR + +YF E + + C+ CD+C
Sbjct: 1018 DGNYHTKETHVNNLYSMVHYCENITECRRIQLLAYFGEKGFNPDFCKKYPDVSCDNC 1074
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 21 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
+IAFG+GIDKP+VRFVIH L KSME +YQ
Sbjct: 953 ATIAFGMGIDKPDVRFVIHASLPKSMEGYYQ 983
>sp|O18017|BLM_CAEEL Bloom syndrome protein homolog OS=Caenorhabditis elegans GN=him-6
PE=2 SV=2
Length = 988
Score = 133 bits (334), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 112/205 (54%), Gaps = 29/205 (14%)
Query: 56 PAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV- 114
P A + ++ + + M + + +SGI+Y S KECE ++ L GL YHA L N+
Sbjct: 450 PKAARSLIN-VVEKMKQLYPGKSGIVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDNLR 508
Query: 115 -----------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAH 157
+IAFG+GIDKP+VRFVIH+ L KS+E +YQE+GRAGRDG ++
Sbjct: 509 VSVQRSWIANKFDVICATIAFGMGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSY 568
Query: 158 CILYYRLPDVFKLSSMVFDQQTG-------LANLYNIVSYCLDQTRCRRAIIASYFDEAW 210
C++ Y D +L M+ + T L N+ +V+YC + + CRR ++ +F E +
Sbjct: 569 CLMLYSYHDSIRLRRMIEEGNTTTGVRSMHLNNVLQVVAYCENVSVCRRKMLVEHFGEVY 628
Query: 211 SDTECRG---MCDHCRGGRRDAKRV 232
+ CR CD C R++A+ +
Sbjct: 629 DEQSCRNSKTPCDICERQRKNAEAI 653
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 27/31 (87%)
Query: 21 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
+IAFG+GIDKP+VRFVIH+ L KS+E +YQ
Sbjct: 525 ATIAFGMGIDKPDVRFVIHYSLPKSIEGYYQ 555
>sp|Q9DEY9|BLM_XENLA Bloom syndrome protein homolog OS=Xenopus laevis GN=blm PE=2 SV=1
Length = 1364
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 131/265 (49%), Gaps = 42/265 (15%)
Query: 11 LNLWRTSFYQVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQV---------RIKPAAQKD 61
LN+ R F V + P V+ I + L + + + + P K
Sbjct: 766 LNVLRQKFQSVPMMALTATANPRVKKDILNQLKMTKPQIFTMSFNRDNLKYEVLPKKPKR 825
Query: 62 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL-ESN------- 113
+ + + + N SGIIY S EC+ + + L+ GL AYHA L +SN
Sbjct: 826 VALDCVEWIKKHHPNDSGIIYCLSRHECDTMADTLQKEGLAALAYHAGLADSNRDYVQHK 885
Query: 114 -----------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYY 162
+IAFG+GIDKP+VR+VIH L KS+E +YQESGRAGRDG+ +HC+L+Y
Sbjct: 886 WINQDDCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGETSHCLLFY 945
Query: 163 RLPDVFKLSSMV--------FDQQTGLANLYNIVSYCLDQTRCRRAIIASYFDE-AWSDT 213
DV ++ ++ +QT NLY++V YC + CRR + SYF E ++
Sbjct: 946 SYHDVTRIRRLIQMEKDGNSHTKQTHFNNLYSMVHYCENVVECRRMQLLSYFGENNFNPN 1005
Query: 214 ECRG----MCDHCRGGRRDAKRVDV 234
C+ CD+C G+++ K DV
Sbjct: 1006 FCKEHTQVACDNCL-GKKNYKSRDV 1029
>sp|P54132|BLM_HUMAN Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1
Length = 1417
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 101/177 (57%), Gaps = 32/177 (18%)
Query: 78 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------------------SIAF 118
SGIIY S +EC+ + + L+ GL AYHA L + +IAF
Sbjct: 890 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 949
Query: 119 GLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVFDQQ 178
G+GIDKP+VRFVIH L KS+E +YQESGRAGRDG+I+HC+L+Y DV +L ++ ++
Sbjct: 950 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEK 1009
Query: 179 TG--------LANLYNIVSYCLDQTRCRRAIIASYFDEAWSDTE-CRG----MCDHC 222
G NLY++V YC + T CRR + +YF E + + C+ CD+C
Sbjct: 1010 DGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVSCDNC 1066
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 21 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
+IAFG+GIDKP+VRFVIH L KS+E +YQ
Sbjct: 945 ATIAFGMGIDKPDVRFVIHASLPKSVEGYYQ 975
>sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rqh1 PE=1 SV=1
Length = 1328
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 105/200 (52%), Gaps = 30/200 (15%)
Query: 49 FYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYH 107
FY+++ K KD EL +S ++SGIIY S CE + +LRN GL+ YH
Sbjct: 719 FYEIKPK----KDLYTELYRFISNGHLHESGIIYCLSRTSCEQVAAKLRNDYGLKAWHYH 774
Query: 108 AKLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRA 149
A LE +IAFG+G+DK +VRFVIHH KS+E +YQE+GRA
Sbjct: 775 AGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRA 834
Query: 150 GRDGQIAHCILYYRLPDVFKLSSMVF----DQQTGLAN---LYNIVSYCLDQTRCRRAII 202
GRDG+ AHCI++Y D ++ D +T L ++ +C ++T CRR +
Sbjct: 835 GRDGKPAHCIMFYSYKDHVTFQKLIMSGDGDAETKERQRQMLRQVIQFCENKTDCRRKQV 894
Query: 203 ASYFDEAWSDTECRGMCDHC 222
+YF E + CR CD C
Sbjct: 895 LAYFGENFDKVHCRKGCDIC 914
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%), Gaps = 3/43 (6%)
Query: 12 NLWRTSFYQV---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
N W++ Y++ +IAFG+G+DK +VRFVIHH KS+E +YQ
Sbjct: 787 NEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQ 829
>sp|Q9I920|BLM_CHICK Bloom syndrome protein homolog (Fragment) OS=Gallus gallus GN=BLM
PE=2 SV=1
Length = 1142
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 129/265 (48%), Gaps = 42/265 (15%)
Query: 11 LNLWRTSFYQVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVR---------IKPAAQKD 61
LN+ R F+ V + P V+ I + L + + + P K
Sbjct: 544 LNMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDVLPKKPKK 603
Query: 62 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL-ESN------- 113
+ + + + + SGIIY S EC+ L+ GL AYHA L +SN
Sbjct: 604 VAMDCLEWIKKYHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDSNRDLVQKK 663
Query: 114 -----------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYY 162
+IAFG+GIDKP+VR+VIH L KS+E +Y ESGRAGRDG+++HC+L+Y
Sbjct: 664 WVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYHESGRAGRDGEMSHCLLFY 723
Query: 163 RLPDVFKLSSMVF--------DQQTGLANLYNIVSYCLDQTRCRRAIIASYFDEA-WSDT 213
DV +L ++ +QT NLY++V YC + CRR + +YF E ++
Sbjct: 724 SYSDVTRLRRLILMEKDGNSHTRQTHFNNLYSMVHYCENVVDCRRIQLLAYFGETDFNPN 783
Query: 214 ECRG----MCDHCRGGRRDAKRVDV 234
C+ +CD+C ++D K +V
Sbjct: 784 FCKDHPEVICDNC-STKKDYKSRNV 807
>sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana
GN=RECQL4A PE=2 SV=1
Length = 1188
Score = 123 bits (309), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 101/202 (50%), Gaps = 39/202 (19%)
Query: 60 KDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------ 113
K CL+++ + ++ GIIY S +CE + E L+ G + + YH +E
Sbjct: 657 KKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQ 716
Query: 114 ------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILY 161
++AFG+GI+KP+VRFVIHH L KS+E ++QE GRAGRDGQ + C+LY
Sbjct: 717 TQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLY 776
Query: 162 YRLPDVFKLSSMV----FDQ-----------------QTGLANLYNIVSYCLDQTRCRRA 200
Y D ++ M+ DQ +T NL +V YC ++ CRR
Sbjct: 777 YGYGDYIRVKHMISQGGVDQSPMATGYNRVASSGRLLETNTENLLRMVRYCENEVECRRF 836
Query: 201 IIASYFDEAWSDTECRGMCDHC 222
+ + E + T C+ CD+C
Sbjct: 837 LQLVHLGEKFDSTNCKKTCDNC 858
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 27/31 (87%)
Query: 21 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
++AFG+GI+KP+VRFVIHH L KS+E ++Q
Sbjct: 729 ATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 759
>sp|Q9FT70|RQL4B_ARATH ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana
GN=RECQL4B PE=2 SV=1
Length = 1150
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 103/212 (48%), Gaps = 40/212 (18%)
Query: 54 IKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN 113
+ P K CL+++ + ++ GIIY S +CE + E LR G + + YH ++
Sbjct: 668 VVPKTNK-CLEDIDKFIRENHFDECGIIYCLSRMDCEKVTEALRVFGHKAAFYHGSMDPG 726
Query: 114 ------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQI 155
++AFG+GI+KP+VRFVIHH L KS+E ++QE GRAGRDGQ
Sbjct: 727 KRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQR 786
Query: 156 AHCILYYRLPDVFKLSSMVFDQ---------------------QTGLANLYNIVSYCLDQ 194
+ C+LYY D ++ M+ +T NL +VSYC ++
Sbjct: 787 SSCVLYYSYTDYIRVKHMISQGGLGQGQMKMGYNCKASSGRMLETNTENLLRMVSYCENE 846
Query: 195 TRCRRAIIASYFDEAWSDTECRGMCDHCRGGR 226
CRR + + E + T C+ CD+C +
Sbjct: 847 VDCRRFLQLVHLGEKFDSTNCKNTCDNCSSSK 878
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 27/30 (90%)
Query: 22 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
++AFG+GI+KP+VRFVIHH L KS+E ++Q
Sbjct: 746 TVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 775
>sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana
GN=RECQL1 PE=2 SV=1
Length = 606
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 111/203 (54%), Gaps = 33/203 (16%)
Query: 50 YQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHA 108
Y+V +K K+ L +L +L+ RF++QSGI+Y S EC D+ + L + ++ YHA
Sbjct: 404 YEVIVK---TKEPLKQLQELLRDRFKDQSGIVYCLSKSECVDVAKFLNEKCKVKTVYYHA 460
Query: 109 KLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAG 150
+ + +IAFG+GIDK +VRFVIH+ LSK++E++YQESGRAG
Sbjct: 461 GVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESYYQESGRAG 520
Query: 151 RDGQIAHCILYYRLPDVFKLSSMVFDQQ--------TGLANLYNIVSYCLDQTRCRRAII 202
RDG A CI Y+ D ++ M+ + Q + +A + YC +T CRR ++
Sbjct: 521 RDGLQAQCICLYQKKDFSRVVCMLRNGQGRNMDRFKSAMAQAKKMQQYCELKTECRRQML 580
Query: 203 ASYFDEAWSDTECRG---MCDHC 222
YF E++ C+ CD+C
Sbjct: 581 LEYFGESFDRMICKSSLNPCDNC 603
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 33/41 (80%), Gaps = 3/41 (7%)
Query: 14 WRTSFYQV---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
W+T ++ +IAFG+GIDK +VRFVIH+ LSK++E++YQ
Sbjct: 474 WQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESYYQ 514
>sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12)
GN=recQ PE=1 SV=5
Length = 609
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 116/216 (53%), Gaps = 44/216 (20%)
Query: 30 DKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKEC 89
D+PN+R+++ ME F KP LD+L + + R +SGIIY S +
Sbjct: 209 DRPNIRYML-------MEKF-----KP------LDQLMRYVQEQ-RGKSGIIYCNSRAKV 249
Query: 90 EDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVI 131
ED L+++G+ +AYHA LE+NV ++AFG+GI+KPNVRFV+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 132 HHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVFDQQTG-LANL----YN 186
H + +++E++YQE+GRAGRDG A +L+Y D+ L + ++ G L ++ N
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLN 369
Query: 187 IVSYCLDQTRCRRAIIASYFDEAWSDTECRGMCDHC 222
+ + CRR ++ +YF E + C G CD C
Sbjct: 370 AMGAFAEAQTCRRLVLLNYFGEGRQEP-C-GNCDIC 403
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 27/30 (90%)
Query: 22 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
++AFG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 293 TVAFGMGINKPNVRFVVHFDIPRNIESYYQ 322
>sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=recQ PE=3 SV=3
Length = 609
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 115/216 (53%), Gaps = 44/216 (20%)
Query: 30 DKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKEC 89
D+PN+R+++ ME F KP LD+L + + R +SGIIY S +
Sbjct: 209 DRPNIRYML-------MEKF-----KP------LDQLMRYVQEQ-RGKSGIIYCNSRAKV 249
Query: 90 EDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVI 131
ED L++RG+ +AYHA LE+ + ++AFG+GI+KPNVRFV+
Sbjct: 250 EDTAARLQSRGISAAAYHAGLENAIRVDVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 132 HHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVFDQQTG-LANL----YN 186
H + +++E++YQE+GRAGRDG A +L+Y D+ L + ++ G L ++ N
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGQLQDIERHKLN 369
Query: 187 IVSYCLDQTRCRRAIIASYFDEAWSDTECRGMCDHC 222
+ + CRR ++ +YF E + C G CD C
Sbjct: 370 AMGAFAEAQTCRRLVLLNYFGEGRQEP-C-GNCDIC 403
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 27/30 (90%)
Query: 22 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
++AFG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 293 TVAFGMGINKPNVRFVVHFDIPRNIESYYQ 322
>sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2
Length = 991
Score = 107 bits (268), Expect = 6e-23, Method: Composition-based stats.
Identities = 66/188 (35%), Positives = 98/188 (52%), Gaps = 37/188 (19%)
Query: 79 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGL 120
GI+Y + + CE L EL RG+ AYHA L+++ +I+FG+
Sbjct: 262 GIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEEKVPVIVATISFGM 321
Query: 121 GIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMV------ 174
G+DK NVRFV H ++KSM +YQESGRAGRDG+ + C LYY D ++S ++
Sbjct: 322 GVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAK 381
Query: 175 ---------FDQQTGLANLYNIVSYCLDQTRCRRAIIASYFDEAWSDTECRGMCDHCRGG 225
D+ T +A +V++C ++ CR A IA YF +A C CDHC+
Sbjct: 382 LQEKRGNKASDKATIMA-FDALVTFC-EELGCRHAAIAKYFGDALP--ACAKGCDHCQNP 437
Query: 226 RRDAKRVD 233
+R++
Sbjct: 438 TAVRRRLE 445
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 24/30 (80%)
Query: 22 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
+I+FG+G+DK NVRFV H ++KSM +YQ
Sbjct: 316 TISFGMGVDKANVRFVAHWNIAKSMAGYYQ 345
>sp|P71359|RECQ_HAEIN ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recQ PE=3 SV=1
Length = 619
Score = 103 bits (257), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 106/217 (48%), Gaps = 46/217 (21%)
Query: 30 DKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKEC 89
D+PN+R+ + K ME + + AQK +SGIIY S +
Sbjct: 212 DRPNIRYTLEEKY-KPMEQLTRFVL---AQK---------------GKSGIIYCNSRNKV 252
Query: 90 EDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVI 131
E + E LRN+G+ +AYHA +E+ + +IAFG+GI+K NVRFV
Sbjct: 253 ERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFVA 312
Query: 132 HHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVFDQ------QTGLANLY 185
H L +S+E++YQE+GRAGRD A +L+Y D L ++ ++ Q L
Sbjct: 313 HFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETPQRQIEQHKLE 372
Query: 186 NIVSYCLDQTRCRRAIIASYFDEAWSDTECRGMCDHC 222
I + QT CRR ++ +YF E T C CD C
Sbjct: 373 AIGEFAESQT-CRRLVLLNYFGE-HRQTPCNN-CDIC 406
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 25/30 (83%)
Query: 22 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
+IAFG+GI+K NVRFV H L +S+E++YQ
Sbjct: 296 TIAFGMGINKSNVRFVAHFDLPRSIESYYQ 325
>sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain
Pm70) GN=recQ PE=3 SV=1
Length = 632
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 107/217 (49%), Gaps = 46/217 (21%)
Query: 30 DKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKEC 89
D+PN+R+ + +E F KP Q C L + +SGIIY S +
Sbjct: 222 DRPNIRYTL-------VEKF-----KPMEQL-CRFVLGQ------KGKSGIIYCNSRSKV 262
Query: 90 EDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLGIDKPNVRFVI 131
E + E LRN+G+ AYHA LE++ +IAFG+GI+K NVRFV+
Sbjct: 263 ERIAESLRNKGVSAQAYHAGLETSQREQVQRAFQRDNVQVVVATIAFGMGINKSNVRFVV 322
Query: 132 HHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVFDQ------QTGLANLY 185
H L +S+E++YQE+GRAGRD A +L+Y D L ++ ++ Q L
Sbjct: 323 HFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLHKILLEKPESPQRQIEALKLQ 382
Query: 186 NIVSYCLDQTRCRRAIIASYFDEAWSDTECRGMCDHC 222
I + QT CRR ++ +YF E C+ CD C
Sbjct: 383 AIGEFAESQT-CRRLVLLNYFGE-HQQKPCQN-CDIC 416
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 26/30 (86%)
Query: 22 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
+IAFG+GI+K NVRFV+H L +S+E++YQ
Sbjct: 306 TIAFGMGINKSNVRFVVHFDLPRSIESYYQ 335
>sp|Q9FT72|RQL3_ARATH ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana
GN=RECQL3 PE=1 SV=1
Length = 713
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 103/205 (50%), Gaps = 37/205 (18%)
Query: 49 FYQVRIKPAAQKDCLD----ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVS 104
FY+VR K D LD +L +L+ + N IIY C+DL L + G+ +
Sbjct: 231 FYEVRYK-----DLLDNAYTDLGNLL-KSCGNICAIIYCLERTTCDDLSVHLSSIGISSA 284
Query: 105 AYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQES 146
AYHA L S + ++AFG+GIDK +VR V H + KSME+FYQES
Sbjct: 285 AYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQES 344
Query: 147 GRAGRDGQIAHCILYYRLPDVFKLSSMVFDQQT--------GLANLYNIVSYCLDQTRCR 198
GRAGRD + +LYY + D K+ ++ + + ++ IV+YC + + CR
Sbjct: 345 GRAGRDQLPSRSVLYYGVDDRKKMEYLLRNSENKKSSSSKKPTSDFEQIVTYC-EGSGCR 403
Query: 199 RAIIASYFDEAWSDTECRGMCDHCR 223
R I F E + +C+ CD C+
Sbjct: 404 RKKILESFGEEFPVQQCKKTCDACK 428
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 3/44 (6%)
Query: 11 LNLWRTSFYQV---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
L+ W +S Q+ ++AFG+GIDK +VR V H + KSME+FYQ
Sbjct: 299 LDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQ 342
>sp|O34748|RECQ_BACSU Probable ATP-dependent DNA helicase RecQ OS=Bacillus subtilis
(strain 168) GN=recQ PE=3 SV=1
Length = 591
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 91/187 (48%), Gaps = 27/187 (14%)
Query: 64 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------- 114
D D + R+++GI+YT + KE + + E L+ +R YH L +V
Sbjct: 218 DRFIDEYVQNNRHEAGIVYTATRKEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFL 277
Query: 115 ---------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLP 165
+ AFG+GIDK N+RFV+H + K ME++YQE+GRAGRDG + C+L +
Sbjct: 278 NDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGRAGRDGLASECVLLFSPQ 337
Query: 166 DVF------KLSSMVFDQQTGLANLYNIVSYCLDQTRCRRAIIASYFDEAWSDTECRGMC 219
D+ + S Q+ L L +V YC + C + I YF E D C G C
Sbjct: 338 DIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTED-CLQRFILMYFGEKEPDA-C-GQC 394
Query: 220 DHCRGGR 226
+C R
Sbjct: 395 GNCTDTR 401
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 24 AFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
AFG+GIDK N+RFV+H + K ME++YQ
Sbjct: 289 AFGMGIDKSNIRFVLHAQIPKDMESYYQ 316
>sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis thaliana
GN=RECQSIM PE=2 SV=1
Length = 858
Score = 97.4 bits (241), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 92/171 (53%), Gaps = 30/171 (17%)
Query: 80 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLG 121
IIY + KE ++ + L GL+ +AY+A L +IAFG+G
Sbjct: 501 IIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMG 560
Query: 122 IDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILY---YRLPDVFKLSSMVFDQQ 178
IDK NVR +IH+ +S+E +YQE+GRAGRDG++A C+LY R P + L S +Q
Sbjct: 561 IDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDGELAECVLYADLSRAPTL--LPSRRSKEQ 618
Query: 179 TGLANLYNIVSYC----LDQTRCRRAIIASYFDEAWSDTECRGMCDHCRGG 225
T A Y ++S C ++ ++CR I+ YF E +S +C CD C G
Sbjct: 619 TEQA--YKMLSDCFRYGMNTSQCRAKILVEYFGEEFSSKKCNS-CDVCTEG 666
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 21 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
+IAFG+GIDK NVR +IH+ +S+E +YQ
Sbjct: 553 ATIAFGMGIDKKNVRKIIHYGWLQSLEAYYQ 583
>sp|Q5UPX0|YR290_MIMIV Putative ATP-dependent RNA helicase R290 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R290 PE=3 SV=1
Length = 548
Score = 94.4 bits (233), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 31/204 (15%)
Query: 49 FYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA 108
+ +VR K K+ +++ ++++ + NQS IIY + KE + + + L + YHA
Sbjct: 218 YLEVRTK---SKNPANDIVPIINK-YPNQSVIIYCLTKKETQKIADILTVHKVVCGIYHA 273
Query: 109 KLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAG 150
L + +IAFG+GI+KP+VR VIH+ K++E +YQE GRAG
Sbjct: 274 GLSNEHKTKTHTNFINNKIKIVVATIAFGMGINKPDVRVVIHYGAPKNIEGYYQEIGRAG 333
Query: 151 RDGQIAHCILYYRLPDVFKLSSMVFD------QQTGLANLYNIVSYCLDQTRCRRAIIAS 204
RDG+ ++C +Y D + Q+T LA L + Y +T CRR I+
Sbjct: 334 RDGEKSYCYAFYNFQDFMIQRRFISQNNNPNYQKTQLALLEQMKKYVTLRT-CRRKILLE 392
Query: 205 YFDEAWSDTECRGMCDHCRGGRRD 228
YFDE + +C CD+C G ++
Sbjct: 393 YFDEETKE-KC-DFCDNCCGVHKN 414
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 25/30 (83%)
Query: 22 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
+IAFG+GI+KP+VR VIH+ K++E +YQ
Sbjct: 298 TIAFGMGINKPDVRVVIHYGAPKNIEGYYQ 327
>sp|Q19546|WRN_CAEEL Probable Werner syndrome ATP-dependent helicase homolog 1
OS=Caenorhabditis elegans GN=wrn-1 PE=3 SV=2
Length = 1056
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 26/169 (15%)
Query: 80 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLG 121
IIY + + +D+ LR G+R + YHA L N ++AFG+G
Sbjct: 450 IIYCQTKQMVDDVNCVLRRIGVRSAHYHAGLTKNQREKAHTDFMRDKITTIVATVAFGMG 509
Query: 122 IDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDV----FKLSSMVFDQ 177
IDKP+VR VIH+ ++E++YQE GRAGRDG + C +++ D+ FKL + +
Sbjct: 510 IDKPDVRNVIHYGCPNNIESYYQEIGRAGRDGSPSICRVFWAPKDLNTIKFKLRNSQQKE 569
Query: 178 QT--GLANLYNIVSYCLDQTRCRRAIIASYFDEAWSDTECRGM--CDHC 222
+ L + + L CRR + +FD +++ CD C
Sbjct: 570 EVVENLTMMLRQLELVLTTVGCRRYQLLKHFDPSYAKPPTMQADCCDRC 618
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 25/30 (83%)
Query: 22 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
++AFG+GIDKP+VR VIH+ ++E++YQ
Sbjct: 503 TVAFGMGIDKPDVRNVIHYGCPNNIESYYQ 532
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 29/174 (16%)
Query: 80 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 121
IIY S K + + ELR L YHA + + +IAFG+G
Sbjct: 768 IIYCPSRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIAFGMG 827
Query: 122 IDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVFDQQTGL 181
I+K ++R VIH+ K ME++YQE GRAGRDG + C + + D+ ++ + +
Sbjct: 828 INKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEK 887
Query: 182 ANLYNI-----VSYCLDQTRCRRAIIASYFDEAWSDTECRGM------CDHCRG 224
LY + + L +RCRR II S+F++ G+ CD+CR
Sbjct: 888 FRLYKLKMMAKMEKYLHSSRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNCRS 941
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 21 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
+IAFG+GI+K ++R VIH+ K ME++YQ
Sbjct: 820 ATIAFGMGINKADIRQVIHYGAPKDMESYYQ 850
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
GN=wrn PE=2 SV=1
Length = 1436
Score = 73.9 bits (180), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 31/174 (17%)
Query: 80 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLG 121
I+Y + K E + EL G+ YHA + ++AFG+G
Sbjct: 711 IVYCPTRKTSEQVTAELIKLGIACGTYHAGMGIKQRREVHHRFMRDEIHCVVATVAFGMG 770
Query: 122 IDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVFD----- 176
I+KP++R VIH+ K ME++YQE GRAGRDG + C + D+ M+ +
Sbjct: 771 INKPDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSCCHALWAQADMNFNRHMLGEIPNKG 830
Query: 177 -QQTGLANLYNIVSYCLDQTRCRRAIIASYFDEAWSDTECRGM------CDHCR 223
++ L L + Y L+ + CRR II S+F++ G+ CD+C+
Sbjct: 831 FREYKLKMLTKMEKY-LNSSTCRRKIILSHFEDKQLRKASSGIMGTEKCCDNCK 883
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 21 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
++AFG+GI+KP++R VIH+ K ME++YQ
Sbjct: 763 ATVAFGMGINKPDIRKVIHYGAPKEMESYYQ 793
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus
GN=Wrn PE=1 SV=3
Length = 1401
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 29/173 (16%)
Query: 80 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAFGLG 121
IIY S K E + EL L YHA ++ + ++AFG+G
Sbjct: 733 IIYCPSRKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVAFGMG 792
Query: 122 IDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVFDQQTGL 181
I+K ++R VIH+ K ME++YQE GRAGRDG + C L + D +++ +
Sbjct: 793 INKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSRNLLIEIHDEK 852
Query: 182 ANLYNI-----VSYCLDQTRCRRAIIASYFDEA---WSDTECRGM---CDHCR 223
LY + + L ++CRR II S+F++ + + G CD+CR
Sbjct: 853 FRLYKLKMMVKMEKYLHSSQCRRRIILSHFEDKCLQKASLDIMGTEKCCDNCR 905
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 21 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
++AFG+GI+K ++R VIH+ K ME++YQ
Sbjct: 785 ATVAFGMGINKADIRKVIHYGAPKEMESYYQ 815
>sp|P50729|RECS_BACSU Probable ATP-dependent DNA helicase RecS OS=Bacillus subtilis
(strain 168) GN=recS PE=3 SV=1
Length = 496
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 70/140 (50%), Gaps = 20/140 (14%)
Query: 78 SGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESNVSI------------------AF 118
GI+Y + K ++L E++++ R YH LES I AF
Sbjct: 230 PGIVYCPTRKWAKELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAF 289
Query: 119 GLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVFDQQ 178
G+G+DKP++R+VIH L ++ E F QE GRAGRDG+ + IL R P F+L + +
Sbjct: 290 GMGVDKPDIRYVIHFHLPQTAEAFMQEIGRAGRDGKPSVSIL-LRAPGDFELQEQIIQME 348
Query: 179 TGLANLYNIVSYCLDQTRCR 198
+ A V L++T R
Sbjct: 349 SVTAEEIADVIRVLEKTEER 368
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 90/212 (42%), Gaps = 55/212 (25%)
Query: 24 AFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLM--SRRFRNQSGII 81
AFG+G+DKP++R+VIH L ++ E F Q + A +D ++ L+ F Q II
Sbjct: 288 AFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGR--AGRDGKPSVSILLRAPGDFELQEQII 345
Query: 82 YTTSI--KECEDL------REELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHH 133
S+ +E D+ EE R LR +V + +G+G + R +IH
Sbjct: 346 QMESVTAEEIADVIRVLEKTEERDERRLR----------DVLLQYGVG--ETQARMMIHL 393
Query: 134 CLS--KSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVFDQQTGLANLYNIVSYC 191
+ S+E +E + YR+ KL M + VS+
Sbjct: 394 FMQGKTSVELMKKE--------------ISYRME--LKLEKM------------HRVSFL 425
Query: 192 LDQTRCRRAIIASYFDEAW-SDTECRGMCDHC 222
L + C R + +YFDE++ D C HC
Sbjct: 426 LQRDGCLRQALLTYFDESYEPDDGNLPCCSHC 457
>sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1
Length = 1208
Score = 63.5 bits (153), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/129 (34%), Positives = 61/129 (47%), Gaps = 33/129 (25%)
Query: 66 LADLMSRRFRN-QSGIIYTTSIKECEDLREELRN---------RGLRV-----SAYHAKL 110
L L +RF+N S IIY ++ E + LR G R AYHA +
Sbjct: 689 LTLLQGKRFQNLDSIIIYCNRREDTERIAALLRTCLHAAWVPGSGGRAPKTTAEAYHAGM 748
Query: 111 ESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRD 152
S ++AFG+G+D+P+VR V+H L S E++ Q GRAGRD
Sbjct: 749 CSRERRRVQRAFMQGQLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRD 808
Query: 153 GQIAHCILY 161
GQ AHC L+
Sbjct: 809 GQPAHCHLF 817
Score = 37.4 bits (85), Expect = 0.084, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 22 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
++AFG+G+D+P+VR V+H L S E++ Q
Sbjct: 771 TVAFGMGLDRPDVRAVLHLGLPPSFESYVQ 800
>sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2
Length = 1216
Score = 63.5 bits (153), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 59/126 (46%), Gaps = 33/126 (26%)
Query: 69 LMSRRFRN-QSGIIYTTS----------IKECEDLREELRNRGLR----VSAYHAKLESN 113
L RFR S IIY T ++ C + + R RG AYHA + S
Sbjct: 714 LQGDRFRTLDSVIIYCTRERIQNGWLALLRTCLSMVGDSRPRGCGPEAIAEAYHAGMSSQ 773
Query: 114 ------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQI 155
++AFG+G+D+P+VR V+H L S E++ Q GRAGRDG+
Sbjct: 774 ERRRVQQAFMRGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKP 833
Query: 156 AHCILY 161
AHC L+
Sbjct: 834 AHCHLF 839
Score = 37.4 bits (85), Expect = 0.093, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 22 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
++AFG+G+D+P+VR V+H L S E++ Q
Sbjct: 793 TVAFGMGLDRPDVRAVLHLGLPPSFESYVQ 822
>sp|Q0WVW7|RQL5_ARATH ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana
GN=RECQL5 PE=2 SV=2
Length = 911
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 18/115 (15%)
Query: 77 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIAF 118
+S I+Y E + + + LR+ + YH+ L + ++AF
Sbjct: 487 RSIIVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAF 546
Query: 119 GLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSM 173
G+G+DK +V VIH + SME + QE GRAGRDG++++C L+Y KL S+
Sbjct: 547 GMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDNDTYLKLRSL 601
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 22 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
++AFG+G+DK +V VIH + SME + Q
Sbjct: 543 TVAFGMGLDKGDVGAVIHFSVPGSMEEYVQ 572
>sp|P73421|RECQ_SYNY3 ATP-dependent DNA helicase RecQ OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=recQ PE=3 SV=1
Length = 478
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 18/108 (16%)
Query: 76 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN------------------VSIA 117
+SG+IY + +L + L+ RG AYH L + + A
Sbjct: 239 QESGLIYVRTRTMAINLAQWLQERGFDSEAYHGGLGPHQRRQLEQKWLTGQISSVVCTNA 298
Query: 118 FGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLP 165
FGLGIDKP+ R+V+H+ + ++ QE GRAGRD Q A C+ P
Sbjct: 299 FGLGIDKPDTRWVLHYQAPLMLMDYLQEVGRAGRDLQPAECLTLVSEP 346
Score = 33.9 bits (76), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 24 AFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
AFGLGIDKP+ R+V+H+ + ++ Q
Sbjct: 298 AFGLGIDKPDTRWVLHYQAPLMLMDYLQ 325
>sp|Q5EAK4|TLH1_SCHPO ATP-dependent DNA helicase tlh1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh1 PE=2 SV=1
Length = 2100
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 117 AFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVFD 176
AFGLGI+ VR V+H+ L S ++ QE+GRAGRDG+ A L+Y D SS V D
Sbjct: 1661 AFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYDS-TWSSYVED 1719
Query: 177 QQTGLANLYNIVSYCLDQTRCRRAIIASYFD 207
N D T C R+ +AS D
Sbjct: 1720 SMKNFLN---------DNTMCVRSFLASEMD 1741
>sp|Q1RKN3|TLH2_SCHPO ATP-dependent DNA helicase tlh2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh2 PE=2 SV=1
Length = 1919
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 117 AFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVFD 176
AFGLGI+ VR V+H+ L S ++ QE+GRAGRDG+ A L+Y D SS V D
Sbjct: 1480 AFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYDS-TWSSYVED 1538
Query: 177 QQTGLANLYNIVSYCLDQTRCRRAIIASYFD 207
N D T C R+ +AS D
Sbjct: 1539 SMKNFLN---------DNTMCVRSFLASEMD 1560
>sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=Ddx21 PE=2 SV=1
Length = 782
Score = 49.7 bits (117), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 93 REELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRD 152
+ E+ +G R + + +NV+ G+D P V V+ C K +E++ SGR GR
Sbjct: 471 QREITLKGFRNGNFGVLVATNVA---ARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRA 527
Query: 153 GQIAHCILYYRLPDVFKLSSMVFDQQTGL 181
G+ CI +Y+ + ++L+ + +Q+ G+
Sbjct: 528 GRTGVCICFYQHKEEYQLAQV--EQKAGI 554
>sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=3
Length = 851
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 93 REELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRD 152
+ E+ +G R + + +NV+ G+D P V V+ C K +E++ SGR GR
Sbjct: 547 QREITLKGFRNGNFGVLVATNVA---ARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRA 603
Query: 153 GQIAHCILYYRLPDVFKLSSMVFDQQTGL 181
G+ CI +Y+ + ++L+ + +Q+ G+
Sbjct: 604 GRTGVCICFYQNKEEYQLAQV--EQKAGI 630
>sp|G2TRN7|YM06_SCHPO RecQ DNA helicase-like protein C212.06c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC212.06c PE=3 SV=1
Length = 147
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 127 VRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVFDQQTGLANLYN 186
VR V+H+ L S ++ QE+GRAGRDG+ A L+Y D SS V D N
Sbjct: 3 VRLVVHYRLPASSMDYVQETGRAGRDGKYAIAALFYEKYDS-TWSSYVEDSMKNFLN--- 58
Query: 187 IVSYCLDQTRCRRAIIASYFD 207
D T C R+ +AS D
Sbjct: 59 ------DNTMCVRSFLASEMD 73
>sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 PE=1 SV=5
Length = 783
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 93 REELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRD 152
+ E+ +G R ++ + +NV+ G+D P V VI K +E++ SGR GR
Sbjct: 475 QREITLKGFRNGSFGVLVATNVA---ARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRA 531
Query: 153 GQIAHCILYYRLPDVFKLSSMVFDQQTGL 181
G+ CI +Y+ + ++L + +Q+ G+
Sbjct: 532 GRTGVCICFYQHKEEYQLVQV--EQKAGI 558
>sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana
GN=RH21 PE=2 SV=1
Length = 733
Score = 45.1 bits (105), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 33/134 (24%)
Query: 39 HHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRN 98
H + K E F+++ + LDEL + ++ I++ + K C+ + + L
Sbjct: 554 HVIMMKESEKFFRL-------QKLLDELGE--------KTAIVFVNTKKNCDSIAKNLDK 598
Query: 99 RGLRVSAYHA---------KLES------NVSIA---FGLGIDKPNVRFVIHHCLSKSME 140
G RV+ H LE NV +A G GID P+V VI++ + K +E
Sbjct: 599 AGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIE 658
Query: 141 NFYQESGRAGRDGQ 154
+ GR GR G+
Sbjct: 659 MYTHRIGRTGRAGK 672
>sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana
GN=RH53 PE=2 SV=1
Length = 616
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 121 GIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYY 162
G+D PNV +IH+ L + E F +GR GR G+ IL Y
Sbjct: 411 GLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIY 452
>sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Oryza
sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2
Length = 758
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 23/117 (19%)
Query: 66 LADLMSRRFRNQSGIIYTTSIKECEDLREELRN--------------------RGLRVSA 105
L+DL++ + I++T + ++ +++ L N G R
Sbjct: 341 LSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGK 400
Query: 106 YHAKLESNVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYY 162
+ + ++V+ G+D PNV +IH+ L E F SGR GR G+ IL +
Sbjct: 401 FTVLVATDVA---ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMF 454
>sp|A5DAC8|DBP3_PICGU ATP-dependent RNA helicase DBP3 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=DBP3 PE=3 SV=2
Length = 534
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 20/114 (17%)
Query: 66 LADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL--------------- 110
L L+ + +Q +++ KE + LR G V+A H L
Sbjct: 360 LLQLLRQYGSDQKILVFALYKKEATRVEAMLRRSGFNVAAIHGDLSQQQRTSALDSFKRG 419
Query: 111 ESNVSIAFGL---GIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQ--IAHCI 159
+SN+ +A + G+D PNV+ VI+ ++E++ GR GR GQ IAH +
Sbjct: 420 DSNLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGRAGQTGIAHTL 473
>sp|P38719|DBP8_YEAST ATP-dependent RNA helicase DBP8 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DBP8 PE=1 SV=1
Length = 431
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 74 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE---------------SNVSIAF 118
+ N++ II+ E LR L+ +RV++ H+++ + + IA
Sbjct: 252 YENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFRANAARILIAT 311
Query: 119 GL---GIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSM 173
+ G+D P V V+++ + + F SGR R G+I I + DV ++ ++
Sbjct: 312 DVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQRDVSRIQAI 369
>sp|A6ZT77|DBP8_YEAS7 ATP-dependent RNA helicase DBP8 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DBP8 PE=3 SV=1
Length = 431
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 74 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE---------------SNVSIAF 118
+ N++ II+ E LR L+ +RV++ H+++ + + IA
Sbjct: 252 YENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFRANAARILIAT 311
Query: 119 GL---GIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSM 173
+ G+D P V V+++ + + F SGR R G+I I + DV ++ ++
Sbjct: 312 DVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQRDVSRIQAI 369
>sp|P41378|IF4A_WHEAT Eukaryotic initiation factor 4A OS=Triticum aestivum PE=2 SV=1
Length = 414
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 27/162 (16%)
Query: 45 SMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVS 104
++E Q + ++ LD L DL QS +I+ + ++ + L +++R R VS
Sbjct: 250 TLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQS-VIFVNTRRKVDWLTDKMRGRDHTVS 308
Query: 105 AYHAKLESN---------------VSIAFGL---GIDKPNVRFVIHHCLSKSMENFYQES 146
A H ++ N V I L GID V VI++ L EN+
Sbjct: 309 ATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYQHRI 368
Query: 147 GRAGRDGQIAHCILYYRLPDVFKLSSMVFDQQTGLANLYNIV 188
GR+GR G+ I + D M+FD Q YN+V
Sbjct: 369 GRSGRFGRKGVAINFVTRED----ERMLFDIQ----KFYNVV 402
>sp|P35683|IF4A1_ORYSJ Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica
GN=Os06g0701100 PE=2 SV=2
Length = 414
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 27/162 (16%)
Query: 45 SMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVS 104
++E Q + ++ LD L DL QS +I+ + ++ + L +++R R VS
Sbjct: 250 TLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQS-VIFVNTRRKVDWLTDKMRGRDHTVS 308
Query: 105 AYHAKLESN---------------VSIAFGL---GIDKPNVRFVIHHCLSKSMENFYQES 146
A H ++ N V I L GID V VI++ L EN+
Sbjct: 309 ATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRI 368
Query: 147 GRAGRDGQIAHCILYYRLPDVFKLSSMVFDQQTGLANLYNIV 188
GR+GR G+ I + D M+FD Q YN+V
Sbjct: 369 GRSGRFGRKGVAINFVTRDD----ERMLFDIQ----RFYNVV 402
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,232,717
Number of Sequences: 539616
Number of extensions: 3148859
Number of successful extensions: 11578
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 232
Number of HSP's that attempted gapping in prelim test: 11063
Number of HSP's gapped (non-prelim): 643
length of query: 234
length of database: 191,569,459
effective HSP length: 114
effective length of query: 120
effective length of database: 130,053,235
effective search space: 15606388200
effective search space used: 15606388200
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)