Query psy4494
Match_columns 234
No_of_seqs 202 out of 2069
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 18:30:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4494.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4494hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0514 RecQ Superfamily II DN 100.0 1.3E-38 2.8E-43 289.6 14.7 212 10-227 156-403 (590)
2 PLN03137 ATP-dependent DNA hel 100.0 4.4E-38 9.6E-43 300.9 18.7 181 43-226 650-869 (1195)
3 KOG0353|consensus 100.0 4E-37 8.6E-42 262.6 10.2 218 9-226 239-528 (695)
4 TIGR00614 recQ_fam ATP-depende 100.0 6.5E-34 1.4E-38 259.0 21.8 205 14-226 168-404 (470)
5 PRK11057 ATP-dependent DNA hel 100.0 2.3E-33 5E-38 262.2 20.8 201 14-226 180-407 (607)
6 KOG0351|consensus 100.0 9E-34 1.9E-38 270.4 13.7 199 22-226 437-663 (941)
7 TIGR01389 recQ ATP-dependent D 100.0 1.5E-32 3.2E-37 256.5 20.8 176 43-226 196-396 (591)
8 KOG0352|consensus 100.0 8.9E-31 1.9E-35 226.2 9.3 198 22-226 193-434 (641)
9 KOG0333|consensus 99.9 5E-27 1.1E-31 207.2 13.3 158 11-173 455-632 (673)
10 KOG0330|consensus 99.9 3.6E-27 7.8E-32 201.8 11.0 164 8-176 235-418 (476)
11 KOG0331|consensus 99.9 2.9E-27 6.4E-32 212.1 10.9 163 10-176 273-459 (519)
12 KOG0328|consensus 99.9 2.9E-27 6.3E-32 195.3 7.5 170 4-177 196-385 (400)
13 COG0513 SrmB Superfamily II DN 99.9 1.3E-26 2.8E-31 212.7 12.6 162 9-174 206-390 (513)
14 PRK04837 ATP-dependent RNA hel 99.9 5.1E-24 1.1E-28 191.8 14.5 157 12-173 194-370 (423)
15 PTZ00110 helicase; Provisional 99.9 1.5E-23 3.2E-28 194.0 17.7 185 11-199 311-522 (545)
16 KOG0345|consensus 99.9 3.7E-24 8E-29 187.0 11.2 157 8-169 188-368 (567)
17 KOG0326|consensus 99.9 1.2E-24 2.6E-29 182.4 6.5 171 3-178 253-442 (459)
18 KOG0332|consensus 99.9 6.1E-24 1.3E-28 181.2 10.7 157 8-168 264-446 (477)
19 PRK11776 ATP-dependent RNA hel 99.9 7.5E-23 1.6E-27 186.1 15.5 158 10-173 180-357 (460)
20 PRK10590 ATP-dependent RNA hel 99.9 1.1E-22 2.4E-27 184.7 15.7 159 11-174 183-361 (456)
21 KOG0341|consensus 99.9 1E-23 2.2E-28 180.8 7.0 153 9-166 358-529 (610)
22 PRK11192 ATP-dependent RNA hel 99.9 1.9E-22 4E-27 182.2 15.1 159 10-172 180-359 (434)
23 PRK11634 ATP-dependent RNA hel 99.9 1.8E-22 3.9E-27 189.0 15.4 159 10-173 182-360 (629)
24 KOG0342|consensus 99.9 1.1E-22 2.4E-27 178.7 12.1 161 8-172 261-444 (543)
25 KOG0340|consensus 99.9 8.9E-23 1.9E-27 173.2 10.8 163 11-176 187-372 (442)
26 KOG0335|consensus 99.9 1.4E-22 3E-27 179.7 11.9 157 10-170 264-449 (482)
27 PRK04537 ATP-dependent RNA hel 99.9 3.6E-22 7.9E-27 185.6 15.3 158 11-173 195-372 (572)
28 PLN00206 DEAD-box ATP-dependen 99.9 2.1E-22 4.6E-27 185.4 13.4 161 10-174 302-484 (518)
29 KOG0336|consensus 99.9 1.8E-22 3.9E-27 174.2 11.9 164 10-177 400-584 (629)
30 KOG0338|consensus 99.9 1.1E-22 2.4E-27 179.3 9.1 163 10-176 360-544 (691)
31 PRK01297 ATP-dependent RNA hel 99.9 1.8E-21 3.8E-26 177.8 15.5 110 61-171 321-448 (475)
32 KOG0343|consensus 99.9 4E-21 8.6E-26 171.0 11.8 163 5-172 243-429 (758)
33 KOG0344|consensus 99.9 7.7E-21 1.7E-25 170.2 13.2 161 10-174 323-504 (593)
34 PTZ00424 helicase 45; Provisio 99.8 1E-20 2.3E-25 168.9 13.6 160 10-173 203-382 (401)
35 TIGR03817 DECH_helic helicase/ 99.8 2.2E-20 4.9E-25 178.0 14.1 101 61-164 259-385 (742)
36 KOG0327|consensus 99.8 5.6E-21 1.2E-25 163.7 8.7 164 5-175 197-380 (397)
37 KOG0346|consensus 99.8 1.6E-19 3.6E-24 157.0 13.1 159 5-168 198-413 (569)
38 PRK12898 secA preprotein trans 99.8 4.6E-19 1E-23 164.6 13.8 110 59-168 455-589 (656)
39 KOG0334|consensus 99.8 4.6E-19 1E-23 167.5 13.9 164 7-173 545-728 (997)
40 KOG0339|consensus 99.8 5.8E-19 1.3E-23 156.0 12.5 163 10-175 403-585 (731)
41 KOG4284|consensus 99.8 1.1E-19 2.3E-24 164.3 8.1 160 6-166 197-380 (980)
42 KOG0347|consensus 99.8 7.9E-20 1.7E-24 162.7 6.2 98 76-173 463-578 (731)
43 KOG0350|consensus 99.8 7.7E-19 1.7E-23 154.9 11.0 167 5-176 357-551 (620)
44 KOG0348|consensus 99.8 3.7E-18 8E-23 151.7 11.4 129 41-170 391-559 (708)
45 KOG0337|consensus 99.8 9.3E-19 2E-23 151.7 6.0 162 7-172 194-375 (529)
46 PRK09200 preprotein translocas 99.7 8.4E-18 1.8E-22 159.2 11.9 110 59-168 410-544 (790)
47 PHA02653 RNA helicase NPH-II; 99.7 6.2E-17 1.4E-21 152.0 12.7 153 10-167 323-516 (675)
48 TIGR00580 mfd transcription-re 99.7 5.8E-16 1.3E-20 150.0 16.1 91 75-165 659-770 (926)
49 TIGR03714 secA2 accessory Sec 99.7 3.1E-16 6.8E-21 147.6 11.9 109 59-168 406-540 (762)
50 PRK04914 ATP-dependent helicas 99.7 2.9E-16 6.3E-21 151.9 11.9 104 60-164 478-602 (956)
51 TIGR01587 cas3_core CRISPR-ass 99.7 6.4E-16 1.4E-20 136.2 11.4 88 75-165 221-336 (358)
52 PRK10689 transcription-repair 99.7 3.1E-15 6.7E-20 147.8 16.5 91 75-165 808-919 (1147)
53 PRK13767 ATP-dependent helicas 99.6 8.9E-16 1.9E-20 149.1 11.4 97 63-162 274-395 (876)
54 TIGR01970 DEAH_box_HrpB ATP-de 99.6 1.4E-15 3.1E-20 145.8 12.5 155 10-171 148-342 (819)
55 cd00079 HELICc Helicase superf 99.6 3.1E-15 6.6E-20 112.4 11.7 101 61-161 12-131 (131)
56 PRK09751 putative ATP-dependen 99.6 1.8E-15 3.8E-20 151.1 13.3 90 75-164 243-384 (1490)
57 PRK12906 secA preprotein trans 99.6 1.3E-15 2.8E-20 143.9 11.2 109 59-167 422-555 (796)
58 TIGR00631 uvrb excinuclease AB 99.6 5.7E-15 1.2E-19 138.9 14.6 98 75-173 441-561 (655)
59 PRK11664 ATP-dependent RNA hel 99.6 2.2E-15 4.8E-20 144.7 11.4 153 10-169 151-343 (812)
60 TIGR00963 secA preprotein tran 99.6 3.5E-15 7.5E-20 139.9 11.9 110 59-168 387-520 (745)
61 PRK11131 ATP-dependent RNA hel 99.6 4.4E-15 9.5E-20 146.2 12.1 156 10-170 220-416 (1294)
62 PRK05298 excinuclease ABC subu 99.6 2E-14 4.3E-19 135.7 15.0 92 75-167 445-559 (652)
63 PRK10917 ATP-dependent DNA hel 99.6 5.6E-14 1.2E-18 133.4 16.8 99 62-163 460-587 (681)
64 KOG0329|consensus 99.6 3.6E-16 7.9E-21 128.2 1.4 144 4-169 213-359 (387)
65 TIGR00643 recG ATP-dependent D 99.6 8.5E-14 1.8E-18 131.2 15.3 89 75-163 447-564 (630)
66 TIGR02621 cas3_GSU0051 CRISPR- 99.6 3.1E-14 6.8E-19 135.4 12.2 85 75-164 271-390 (844)
67 PRK12900 secA preprotein trans 99.5 2E-14 4.3E-19 137.2 9.0 110 59-168 580-714 (1025)
68 COG1111 MPH1 ERCC4-like helica 99.5 2.2E-13 4.9E-18 121.1 12.8 107 62-169 349-485 (542)
69 TIGR01967 DEAH_box_HrpA ATP-de 99.5 1.5E-13 3.3E-18 135.7 12.9 155 11-170 214-409 (1283)
70 PRK13766 Hef nuclease; Provisi 99.5 3E-13 6.4E-18 130.5 14.7 106 61-167 347-481 (773)
71 TIGR03158 cas3_cyano CRISPR-as 99.5 4.4E-13 9.4E-18 118.4 13.0 73 75-150 271-357 (357)
72 PRK02362 ski2-like helicase; P 99.5 1.3E-13 2.9E-18 132.2 10.3 101 62-165 232-397 (737)
73 PF00271 Helicase_C: Helicase 99.5 5.1E-14 1.1E-18 97.1 5.2 60 94-153 1-78 (78)
74 COG1201 Lhr Lhr-like helicases 99.5 2.3E-13 5E-18 129.0 10.6 102 60-164 240-361 (814)
75 PRK14701 reverse gyrase; Provi 99.4 1.5E-13 3.2E-18 139.3 8.1 110 64-175 320-466 (1638)
76 KOG0349|consensus 99.4 2.2E-13 4.9E-18 119.1 6.9 93 74-166 503-616 (725)
77 PHA02558 uvsW UvsW helicase; P 99.4 1E-12 2.2E-17 120.9 11.0 92 75-166 343-453 (501)
78 PRK09401 reverse gyrase; Revie 99.4 6E-13 1.3E-17 132.0 7.1 133 10-150 270-429 (1176)
79 PRK00254 ski2-like helicase; P 99.4 3.2E-12 7E-17 122.4 10.1 99 65-166 230-389 (720)
80 COG1202 Superfamily II helicas 99.3 1.9E-12 4.2E-17 116.6 6.5 152 6-165 370-553 (830)
81 PRK01172 ski2-like helicase; P 99.3 2.4E-11 5.1E-16 115.7 11.1 99 75-174 235-388 (674)
82 smart00490 HELICc helicase sup 99.2 1.1E-11 2.4E-16 85.2 5.5 63 91-153 2-82 (82)
83 TIGR00603 rad25 DNA repair hel 99.2 4.5E-11 9.7E-16 112.9 10.5 101 62-167 481-609 (732)
84 KOG0354|consensus 99.2 2.9E-10 6.2E-15 106.3 11.5 106 60-167 394-531 (746)
85 TIGR01054 rgy reverse gyrase. 99.2 2.8E-10 6.1E-15 113.3 12.1 73 64-138 316-410 (1171)
86 PRK12904 preprotein translocas 99.1 3.3E-10 7.2E-15 108.0 10.9 109 59-167 412-575 (830)
87 KOG4150|consensus 99.1 1.1E-09 2.3E-14 99.2 11.6 134 32-165 475-640 (1034)
88 PRK13104 secA preprotein trans 99.1 1.3E-09 2.9E-14 104.3 11.7 110 59-168 426-590 (896)
89 COG0556 UvrB Helicase subunit 99.0 5.3E-09 1.2E-13 94.1 13.0 115 46-164 419-556 (663)
90 COG1197 Mfd Transcription-repa 99.0 2.4E-09 5.1E-14 104.1 11.3 155 4-166 739-914 (1139)
91 PRK09694 helicase Cas3; Provis 99.0 3.6E-09 7.8E-14 102.4 12.6 88 61-154 548-664 (878)
92 PRK13107 preprotein translocas 99.0 3.7E-09 8E-14 101.1 11.0 108 60-167 432-593 (908)
93 PLN03142 Probable chromatin-re 98.8 3.7E-08 8.1E-13 96.6 12.9 104 62-165 472-599 (1033)
94 KOG0948|consensus 98.8 7.5E-08 1.6E-12 89.7 11.8 99 65-165 373-539 (1041)
95 COG1205 Distinct helicase fami 98.8 3.5E-08 7.7E-13 95.7 10.1 90 75-164 305-421 (851)
96 TIGR00595 priA primosomal prot 98.8 6E-08 1.3E-12 89.4 10.9 77 89-165 271-382 (505)
97 PRK11448 hsdR type I restricti 98.7 7.5E-08 1.6E-12 95.7 11.2 77 76-152 698-800 (1123)
98 PRK12903 secA preprotein trans 98.7 8.2E-08 1.8E-12 91.5 10.7 109 59-167 408-541 (925)
99 PRK12326 preprotein translocas 98.7 1.3E-07 2.8E-12 88.9 10.2 109 59-167 409-549 (764)
100 COG1061 SSL2 DNA or RNA helica 98.7 1.7E-07 3.7E-12 85.1 10.8 88 75-163 282-389 (442)
101 COG1204 Superfamily II helicas 98.6 5.3E-07 1.2E-11 86.6 12.8 100 62-164 242-407 (766)
102 PRK05580 primosome assembly pr 98.6 2.8E-07 6.2E-12 87.8 10.9 76 88-163 438-547 (679)
103 COG1643 HrpA HrpA-like helicas 98.5 7.7E-07 1.7E-11 85.7 10.8 95 75-170 258-392 (845)
104 COG1200 RecG RecG-like helicas 98.5 2.4E-06 5.1E-11 79.5 12.5 104 60-166 460-592 (677)
105 KOG0950|consensus 98.5 3.7E-07 8E-12 87.1 7.1 100 76-175 460-621 (1008)
106 PRK12899 secA preprotein trans 98.4 2E-06 4.4E-11 83.0 10.9 109 60-168 551-684 (970)
107 PRK13103 secA preprotein trans 98.4 1.2E-06 2.7E-11 84.2 9.3 109 60-168 432-594 (913)
108 KOG0952|consensus 98.4 7.6E-06 1.6E-10 79.0 13.4 157 14-174 281-500 (1230)
109 PRK12901 secA preprotein trans 98.4 2.8E-06 6E-11 82.5 10.3 109 60-168 611-744 (1112)
110 KOG0922|consensus 98.4 2E-06 4.4E-11 79.4 9.0 124 46-171 229-396 (674)
111 COG1203 CRISPR-associated heli 98.3 1.4E-06 3.1E-11 83.8 8.3 87 75-164 439-549 (733)
112 KOG0947|consensus 98.3 1.3E-06 2.8E-11 83.5 7.0 89 75-164 566-722 (1248)
113 COG4098 comFA Superfamily II D 98.2 2.1E-05 4.6E-10 67.9 11.2 98 65-162 293-413 (441)
114 KOG0923|consensus 98.2 3.9E-06 8.4E-11 77.6 6.5 122 44-167 442-608 (902)
115 KOG0951|consensus 98.2 2.1E-05 4.5E-10 77.3 11.5 158 14-174 480-711 (1674)
116 KOG0953|consensus 98.0 2.1E-05 4.5E-10 71.7 8.5 99 75-176 356-487 (700)
117 CHL00122 secA preprotein trans 98.0 4.3E-05 9.4E-10 73.5 11.1 66 60-125 407-491 (870)
118 KOG0390|consensus 97.7 0.00023 5.1E-09 67.9 10.2 104 58-161 575-701 (776)
119 PRK12902 secA preprotein trans 97.7 0.00029 6.3E-09 68.1 10.1 67 59-125 421-506 (939)
120 KOG0920|consensus 97.6 0.00021 4.5E-09 69.4 8.5 108 61-169 398-548 (924)
121 COG4096 HsdR Type I site-speci 97.6 0.00018 3.8E-09 68.5 7.7 76 76-151 426-524 (875)
122 KOG0924|consensus 97.6 0.00024 5.3E-09 66.4 8.1 89 76-165 563-697 (1042)
123 COG4581 Superfamily II RNA hel 97.4 0.00032 7E-09 68.9 6.6 89 75-164 378-536 (1041)
124 KOG0384|consensus 97.4 0.00077 1.7E-08 66.5 8.6 91 75-165 698-811 (1373)
125 KOG0387|consensus 97.3 0.0011 2.4E-08 62.9 8.1 100 62-161 531-652 (923)
126 COG0653 SecA Preprotein transl 97.2 0.00071 1.5E-08 65.0 6.1 108 60-167 412-547 (822)
127 COG1110 Reverse gyrase [DNA re 97.1 0.0015 3.2E-08 63.7 7.4 72 63-136 324-416 (1187)
128 KOG0385|consensus 97.1 0.0051 1.1E-07 58.4 10.4 103 62-166 475-600 (971)
129 KOG0926|consensus 97.0 0.0035 7.7E-08 59.8 8.3 49 115-164 637-703 (1172)
130 COG0553 HepA Superfamily II DN 96.9 0.01 2.2E-07 58.1 11.3 83 78-160 713-815 (866)
131 KOG0925|consensus 96.4 0.016 3.6E-07 52.6 8.0 91 76-167 253-389 (699)
132 TIGR01407 dinG_rel DnaQ family 96.3 0.047 1E-06 53.9 11.6 90 75-164 673-813 (850)
133 KOG1000|consensus 96.3 0.015 3.3E-07 52.9 7.2 83 75-157 491-593 (689)
134 COG4889 Predicted helicase [Ge 96.3 0.0019 4.2E-08 62.2 1.7 87 77-163 461-586 (1518)
135 KOG0949|consensus 96.2 0.0059 1.3E-07 59.5 4.2 58 103-161 965-1044(1330)
136 KOG0391|consensus 96.0 0.057 1.2E-06 53.9 10.3 103 58-166 1260-1388(1958)
137 PF13307 Helicase_C_2: Helicas 96.0 0.027 5.7E-07 44.4 6.9 89 75-164 8-149 (167)
138 PF06862 DUF1253: Protein of u 96.0 0.13 2.8E-06 46.8 11.8 104 75-178 299-428 (442)
139 KOG0388|consensus 95.9 0.055 1.2E-06 51.4 9.1 82 75-156 1043-1143(1185)
140 TIGR00348 hsdR type I site-spe 95.6 0.11 2.4E-06 49.9 10.4 75 76-151 514-633 (667)
141 PRK11747 dinG ATP-dependent DN 95.6 0.38 8.2E-06 46.5 13.9 60 76-136 534-615 (697)
142 KOG0389|consensus 95.6 0.11 2.4E-06 49.8 9.9 113 56-168 756-891 (941)
143 COG1198 PriA Primosomal protei 95.0 0.18 4E-06 48.6 9.6 76 88-163 492-601 (730)
144 COG0514 RecQ Superfamily II DN 94.6 0.005 1.1E-07 57.5 -1.9 36 22-57 287-322 (590)
145 COG1199 DinG Rad3-related DNA 94.5 0.5 1.1E-05 45.2 11.5 97 63-161 468-614 (654)
146 PRK08074 bifunctional ATP-depe 94.4 1.3 2.9E-05 44.3 14.4 61 75-136 751-834 (928)
147 TIGR00596 rad1 DNA repair prot 93.8 1.1 2.3E-05 44.1 12.1 24 75-98 294-317 (814)
148 KOG0351|consensus 93.7 0.015 3.3E-07 57.3 -0.5 35 22-56 542-576 (941)
149 KOG0353|consensus 93.2 0.014 3E-07 51.5 -1.5 31 22-52 374-404 (695)
150 KOG0392|consensus 93.0 0.37 7.9E-06 48.6 7.5 97 61-157 1310-1444(1549)
151 KOG0386|consensus 92.8 0.51 1.1E-05 46.6 8.1 90 75-164 725-835 (1157)
152 TIGR00604 rad3 DNA repair heli 92.5 3.5 7.6E-05 40.0 13.5 63 75-137 521-615 (705)
153 PRK07246 bifunctional ATP-depe 92.2 2 4.4E-05 42.4 11.7 88 75-164 646-782 (820)
154 PF02399 Herpes_ori_bp: Origin 92.0 1.4 2.9E-05 43.0 9.9 99 62-164 271-387 (824)
155 KOG1002|consensus 91.6 0.29 6.2E-06 45.0 4.6 90 73-162 635-746 (791)
156 PF10593 Z1: Z1 domain; Inter 90.1 2.7 5.9E-05 35.1 8.9 88 100-187 110-215 (239)
157 cd01524 RHOD_Pyr_redox Member 88.9 1.4 3.1E-05 30.3 5.5 37 75-111 50-86 (90)
158 TIGR02562 cas3_yersinia CRISPR 87.0 1.2 2.5E-05 44.7 5.3 73 79-154 759-881 (1110)
159 KOG1015|consensus 86.6 1.3 2.9E-05 43.8 5.4 99 62-160 1127-1270(1567)
160 KOG0352|consensus 86.2 0.15 3.2E-06 46.0 -1.1 35 22-56 312-346 (641)
161 PRK14701 reverse gyrase; Provi 85.0 1.5 3.2E-05 46.4 5.2 29 138-166 495-527 (1638)
162 cd01523 RHOD_Lact_B Member of 84.7 2.3 5.1E-05 29.8 4.8 37 75-111 60-96 (100)
163 KOG2340|consensus 84.3 3 6.4E-05 38.8 6.2 101 78-178 554-681 (698)
164 KOG0701|consensus 83.4 1.4 2.9E-05 46.1 4.1 76 77-152 293-398 (1606)
165 KOG1123|consensus 82.9 7.3 0.00016 36.2 8.0 73 75-152 542-634 (776)
166 cd01529 4RHOD_Repeats Member o 82.1 3.1 6.6E-05 29.0 4.5 37 75-111 55-92 (96)
167 smart00450 RHOD Rhodanese Homo 81.9 2 4.3E-05 29.3 3.4 37 75-111 55-92 (100)
168 TIGR03117 cas_csf4 CRISPR-asso 81.1 9.3 0.0002 36.6 8.5 72 62-136 458-560 (636)
169 cd01522 RHOD_1 Member of the R 80.2 4.2 9.1E-05 29.7 4.8 38 75-112 63-101 (117)
170 KOG4439|consensus 79.2 7.6 0.00017 37.4 7.1 86 75-160 745-851 (901)
171 cd01444 GlpE_ST GlpE sulfurtra 77.7 6.7 0.00015 26.9 5.1 37 75-111 55-92 (96)
172 cd01521 RHOD_PspE2 Member of t 76.3 4.3 9.3E-05 29.1 3.8 37 75-111 63-101 (110)
173 cd01534 4RHOD_Repeat_3 Member 75.9 4 8.6E-05 28.4 3.5 37 75-111 55-91 (95)
174 cd01528 RHOD_2 Member of the R 75.7 8.6 0.00019 26.9 5.2 37 75-111 57-94 (101)
175 cd01449 TST_Repeat_2 Thiosulfa 75.3 9.7 0.00021 27.3 5.6 37 75-111 77-114 (118)
176 cd01526 RHOD_ThiF Member of th 75.3 3.4 7.3E-05 30.3 3.1 37 75-111 71-109 (122)
177 cd01518 RHOD_YceA Member of th 74.6 4 8.6E-05 28.7 3.2 37 75-111 60-97 (101)
178 cd01527 RHOD_YgaP Member of th 74.0 5.6 0.00012 27.7 3.8 37 75-111 53-90 (99)
179 PF13871 Helicase_C_4: Helicas 73.9 6.7 0.00015 33.6 4.9 29 127-155 88-116 (278)
180 PLN03137 ATP-dependent DNA hel 73.5 1.7 3.6E-05 44.1 1.3 35 22-56 737-771 (1195)
181 cd01535 4RHOD_Repeat_4 Member 72.9 12 0.00026 28.5 5.7 38 75-112 48-86 (145)
182 cd01519 RHOD_HSP67B2 Member of 72.9 4.7 0.0001 28.4 3.3 37 75-111 65-102 (106)
183 cd00158 RHOD Rhodanese Homolog 72.0 7.9 0.00017 25.8 4.2 37 75-111 49-86 (89)
184 cd01533 4RHOD_Repeat_2 Member 71.5 6.6 0.00014 28.0 3.8 36 76-111 66-103 (109)
185 cd01520 RHOD_YbbB Member of th 70.8 13 0.00029 27.4 5.4 37 75-111 85-122 (128)
186 cd01532 4RHOD_Repeat_1 Member 70.7 7.7 0.00017 26.8 3.9 36 76-111 50-88 (92)
187 cd01448 TST_Repeat_1 Thiosulfa 70.6 9.2 0.0002 27.7 4.5 37 75-111 78-116 (122)
188 cd01447 Polysulfide_ST Polysul 70.6 4.7 0.0001 28.1 2.8 37 75-111 60-97 (103)
189 cd01525 RHOD_Kc Member of the 68.8 7.1 0.00015 27.4 3.5 36 76-111 65-101 (105)
190 COG0634 Hpt Hypoxanthine-guani 68.4 22 0.00047 28.3 6.2 57 58-114 16-79 (178)
191 COG2519 GCD14 tRNA(1-methylade 65.9 17 0.00036 30.7 5.5 40 59-101 174-213 (256)
192 PRK00162 glpE thiosulfate sulf 64.7 19 0.00042 25.4 5.1 37 75-111 57-94 (108)
193 PF00581 Rhodanese: Rhodanese- 64.1 19 0.0004 25.2 4.9 37 75-111 66-108 (113)
194 COG1168 MalY Bifunctional PLP- 62.2 1E+02 0.0022 27.7 9.8 130 63-209 147-307 (388)
195 smart00491 HELICc2 helicase su 62.2 20 0.00043 27.3 5.0 19 118-136 59-79 (142)
196 PLN02160 thiosulfate sulfurtra 60.3 15 0.00032 27.7 3.9 37 75-111 80-117 (136)
197 KOG0951|consensus 58.8 56 0.0012 34.1 8.4 23 75-97 1358-1380(1674)
198 PRK10287 thiosulfate:cyanide s 58.3 20 0.00043 25.7 4.2 36 76-111 60-95 (104)
199 PTZ00240 60S ribosomal protein 58.1 31 0.00066 30.3 5.9 64 72-151 87-153 (323)
200 PRK05320 rhodanese superfamily 57.9 15 0.00033 31.0 4.0 37 75-111 174-211 (257)
201 cd05796 Ribosomal_P0_like Ribo 57.1 36 0.00079 26.5 5.8 63 74-152 76-142 (163)
202 PRK09401 reverse gyrase; Revie 56.7 7.5 0.00016 40.0 2.2 30 138-167 518-551 (1176)
203 PRK11493 sseA 3-mercaptopyruva 56.0 25 0.00053 29.9 5.0 38 75-112 230-268 (281)
204 smart00492 HELICc3 helicase su 55.5 89 0.0019 23.7 9.7 51 79-136 24-78 (141)
205 PRK01415 hypothetical protein; 54.9 25 0.00054 29.6 4.7 37 75-111 170-207 (247)
206 TIGR02981 phageshock_pspE phag 53.2 27 0.00059 24.8 4.1 36 76-111 58-93 (101)
207 PRK11634 ATP-dependent RNA hel 53.0 61 0.0013 31.2 7.6 39 75-113 73-116 (629)
208 TIGR03865 PQQ_CXXCW PQQ-depend 52.3 20 0.00043 27.9 3.6 37 75-111 115-153 (162)
209 KOG1133|consensus 52.1 2.4E+02 0.0052 27.6 11.1 104 61-164 612-779 (821)
210 COG0607 PspE Rhodanese-related 50.9 17 0.00037 25.4 2.8 37 75-111 60-97 (110)
211 PRK11776 ATP-dependent RNA hel 49.7 67 0.0015 29.2 7.2 38 76-113 72-114 (460)
212 PRK05580 primosome assembly pr 48.4 54 0.0012 31.8 6.5 40 75-114 189-229 (679)
213 COG0513 SrmB Superfamily II DN 48.3 1.1E+02 0.0024 28.5 8.4 60 79-145 102-167 (513)
214 PRK14873 primosome assembly pr 48.2 58 0.0013 31.6 6.6 40 75-114 187-228 (665)
215 TIGR00595 priA primosomal prot 47.9 60 0.0013 30.3 6.5 40 75-114 24-64 (505)
216 cd01530 Cdc25 Cdc25 phosphatas 46.6 26 0.00055 25.7 3.2 37 75-111 67-117 (121)
217 PRK00142 putative rhodanese-re 46.4 25 0.00054 30.6 3.6 37 75-111 170-207 (314)
218 PRK10917 ATP-dependent DNA hel 44.8 88 0.0019 30.3 7.4 39 75-113 309-351 (681)
219 cd05795 Ribosomal_P0_L10e Ribo 44.1 70 0.0015 25.2 5.6 62 74-151 75-139 (175)
220 KOG0347|consensus 44.0 35 0.00076 32.3 4.2 36 79-114 266-305 (731)
221 PLN02723 3-mercaptopyruvate su 43.6 52 0.0011 28.6 5.2 37 75-111 268-305 (320)
222 TIGR01389 recQ ATP-dependent D 43.2 1.2E+02 0.0026 28.7 8.0 39 76-114 53-91 (591)
223 cd01132 F1_ATPase_alpha F1 ATP 42.1 1.1E+02 0.0023 26.2 6.7 38 76-113 125-173 (274)
224 TIGR01054 rgy reverse gyrase. 42.0 12 0.00027 38.5 1.2 30 137-166 515-548 (1171)
225 KOG1016|consensus 41.1 91 0.002 31.0 6.5 91 76-166 719-848 (1387)
226 PRK11192 ATP-dependent RNA hel 41.0 94 0.002 28.0 6.6 39 76-114 73-115 (434)
227 TIGR03167 tRNA_sel_U_synt tRNA 41.0 82 0.0018 27.4 5.9 35 77-111 75-110 (311)
228 cd01445 TST_Repeats Thiosulfat 39.4 45 0.00098 25.1 3.7 37 75-111 94-134 (138)
229 COG4019 Uncharacterized protei 39.0 1.7E+02 0.0036 22.1 7.5 73 57-132 20-99 (156)
230 cd00268 DEADc DEAD-box helicas 37.8 1.7E+02 0.0037 22.8 7.1 40 75-114 68-111 (203)
231 PF04273 DUF442: Putative phos 37.7 1.5E+02 0.0032 21.5 6.0 36 59-96 71-106 (110)
232 PTZ00135 60S acidic ribosomal 37.5 88 0.0019 27.3 5.6 63 73-151 81-146 (310)
233 COG1198 PriA Primosomal protei 37.5 58 0.0013 31.9 4.8 50 62-114 234-284 (730)
234 PRK06936 type III secretion sy 37.3 2.6E+02 0.0055 25.8 8.7 86 76-167 216-320 (439)
235 PRK07960 fliI flagellum-specif 37.2 2.1E+02 0.0046 26.4 8.1 86 76-167 229-335 (455)
236 PRK05597 molybdopterin biosynt 37.0 49 0.0011 29.3 4.0 37 75-111 313-350 (355)
237 PRK11784 tRNA 2-selenouridine 36.9 98 0.0021 27.4 5.9 38 75-112 87-125 (345)
238 cd01133 F1-ATPase_beta F1 ATP 35.9 2.8E+02 0.006 23.7 8.7 86 76-167 126-231 (274)
239 KOG0298|consensus 35.5 68 0.0015 33.3 5.0 81 76-156 1221-1315(1394)
240 COG0133 TrpB Tryptophan syntha 35.4 26 0.00057 30.8 1.9 37 103-149 276-322 (396)
241 PF13245 AAA_19: Part of AAA d 34.6 1.1E+02 0.0023 20.5 4.5 46 62-108 27-74 (76)
242 TIGR00643 recG ATP-dependent D 34.1 1.5E+02 0.0032 28.5 7.0 40 75-114 283-326 (630)
243 PRK05728 DNA polymerase III su 33.9 2.1E+02 0.0045 21.7 7.0 73 62-134 14-93 (142)
244 KOG0331|consensus 33.6 2.4E+02 0.0051 26.6 7.9 76 76-151 165-272 (519)
245 COG1832 Predicted CoA-binding 33.6 1.7E+02 0.0036 22.4 5.8 67 84-150 27-97 (140)
246 PRK09281 F0F1 ATP synthase sub 32.6 1.7E+02 0.0038 27.3 6.9 40 75-114 217-267 (502)
247 COG1054 Predicted sulfurtransf 32.4 57 0.0012 28.3 3.5 52 60-112 157-209 (308)
248 PRK07594 type III secretion sy 32.3 2.9E+02 0.0063 25.3 8.2 86 76-167 209-313 (433)
249 PRK13019 clpS ATP-dependent Cl 32.1 1.6E+02 0.0034 20.8 5.2 29 75-103 62-90 (94)
250 KOG0330|consensus 31.9 1.3E+02 0.0027 27.4 5.6 51 63-114 117-171 (476)
251 TIGR00614 recQ_fam ATP-depende 31.4 1.2E+02 0.0027 27.7 5.9 40 75-114 50-89 (470)
252 PRK08762 molybdopterin biosynt 29.9 67 0.0014 28.6 3.7 38 75-112 56-94 (376)
253 PF02617 ClpS: ATP-dependent C 29.7 65 0.0014 21.8 2.9 25 76-100 47-71 (82)
254 PRK07411 hypothetical protein; 29.4 79 0.0017 28.4 4.1 37 75-111 341-377 (390)
255 PF09012 FeoC: FeoC like trans 29.3 27 0.00058 22.8 0.8 41 177-226 24-64 (69)
256 KOG0921|consensus 28.8 1.1E+02 0.0024 30.9 5.1 87 76-163 643-772 (1282)
257 PLN00206 DEAD-box ATP-dependen 28.7 84 0.0018 29.3 4.3 65 22-100 425-491 (518)
258 KOG0336|consensus 27.4 80 0.0017 28.9 3.6 18 143-160 547-564 (629)
259 PRK04837 ATP-dependent RNA hel 27.3 1.6E+02 0.0034 26.4 5.8 37 77-113 84-124 (423)
260 PRK09280 F0F1 ATP synthase sub 27.3 2.1E+02 0.0045 26.6 6.4 86 76-167 201-306 (463)
261 COG3587 Restriction endonuclea 26.7 55 0.0012 32.6 2.7 37 115-151 490-526 (985)
262 PRK10590 ATP-dependent RNA hel 26.3 1.8E+02 0.0039 26.5 6.0 37 77-113 76-116 (456)
263 TIGR03305 alt_F1F0_F1_bet alte 26.3 4.6E+02 0.01 24.2 8.5 86 76-167 195-300 (449)
264 PF11823 DUF3343: Protein of u 26.1 1.7E+02 0.0037 19.2 4.4 28 78-105 3-30 (73)
265 cd01446 DSP_MapKP N-terminal r 26.0 1.6E+02 0.0034 21.5 4.7 37 75-111 74-122 (132)
266 PRK07878 molybdopterin biosynt 26.0 94 0.002 27.9 4.0 37 75-111 342-379 (392)
267 TIGR00696 wecB_tagA_cpsF bacte 25.8 2.6E+02 0.0057 22.0 6.1 82 61-145 35-119 (177)
268 CHL00059 atpA ATP synthase CF1 25.2 2.1E+02 0.0046 26.6 6.1 39 76-114 197-246 (485)
269 PF09413 DUF2007: Domain of un 24.9 1.4E+02 0.0031 18.9 3.8 28 79-106 2-29 (67)
270 COG5211 SSU72 RNA polymerase I 24.9 1E+02 0.0023 24.1 3.4 50 82-137 13-62 (197)
271 PRK00033 clpS ATP-dependent Cl 24.7 2.7E+02 0.0058 19.9 5.6 30 75-104 67-96 (100)
272 PRK05600 thiamine biosynthesis 24.7 1.2E+02 0.0027 27.0 4.5 36 76-111 332-369 (370)
273 cd01443 Cdc25_Acr2p Cdc25 enzy 24.5 1.3E+02 0.0029 21.2 3.9 36 76-111 66-109 (113)
274 PF04364 DNA_pol3_chi: DNA pol 24.1 1.9E+02 0.0042 21.6 4.9 61 75-135 28-95 (137)
275 PRK09099 type III secretion sy 23.0 6E+02 0.013 23.4 9.1 86 76-167 217-321 (441)
276 PRK15483 type III restriction- 23.0 72 0.0016 32.4 2.8 37 115-151 508-544 (986)
277 KOG2333|consensus 22.8 4.3E+02 0.0092 24.9 7.4 99 86-192 405-520 (614)
278 PF09572 RE_XamI: XamI restric 22.7 4.7E+02 0.01 22.0 7.8 17 193-209 221-237 (251)
279 PLN02723 3-mercaptopyruvate su 22.6 1.6E+02 0.0035 25.5 4.7 38 75-112 102-141 (320)
280 PF12683 DUF3798: Protein of u 22.6 1.1E+02 0.0023 26.2 3.4 77 62-140 50-144 (275)
281 PRK09629 bifunctional thiosulf 22.1 1.6E+02 0.0035 28.2 4.9 38 75-112 222-260 (610)
282 KOG0339|consensus 22.1 4.8E+02 0.01 24.8 7.6 37 78-114 298-338 (731)
283 KOG1513|consensus 22.1 91 0.002 31.1 3.2 40 115-154 864-911 (1300)
284 PRK11493 sseA 3-mercaptopyruva 21.8 1.6E+02 0.0034 24.9 4.4 38 75-112 86-125 (281)
285 PRK11057 ATP-dependent DNA hel 21.6 4.5E+02 0.0098 25.1 7.9 39 76-114 65-103 (607)
286 PF00270 DEAD: DEAD/DEAH box h 21.4 3.5E+02 0.0075 20.0 6.7 48 65-113 34-85 (169)
287 PF08704 GCD14: tRNA methyltra 21.2 82 0.0018 26.5 2.5 40 61-102 126-165 (247)
288 KOG0345|consensus 21.1 84 0.0018 29.2 2.6 63 22-100 314-376 (567)
289 PF13380 CoA_binding_2: CoA bi 21.1 3E+02 0.0064 19.9 5.2 65 86-150 13-79 (116)
290 PF11019 DUF2608: Protein of u 20.7 3.1E+02 0.0067 23.0 5.9 45 62-106 163-208 (252)
291 cd06533 Glyco_transf_WecG_TagA 20.6 4E+02 0.0086 20.7 6.2 77 60-138 32-112 (171)
292 cd03028 GRX_PICOT_like Glutare 20.6 1.8E+02 0.0039 19.8 3.8 29 75-103 6-40 (90)
293 PRK02362 ski2-like helicase; P 20.5 4.3E+02 0.0093 25.8 7.6 39 75-113 66-107 (737)
294 PF03716 WCCH: WCCH motif ; I 20.5 70 0.0015 16.7 1.2 11 214-226 5-15 (25)
295 PRK07478 short chain dehydroge 20.5 4E+02 0.0086 21.5 6.5 40 75-114 29-68 (254)
296 PF13361 UvrD_C: UvrD-like hel 20.5 3.1E+02 0.0068 23.0 6.1 46 63-109 64-109 (351)
297 COG0300 DltE Short-chain dehyd 20.4 5.4E+02 0.012 21.9 7.6 49 64-114 20-69 (265)
298 TIGR00580 mfd transcription-re 20.2 4.6E+02 0.0099 26.7 7.8 39 62-103 225-263 (926)
299 KOG0340|consensus 20.1 2.2E+02 0.0048 25.6 4.9 37 76-112 75-115 (442)
No 1
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.3e-38 Score=289.56 Aligned_cols=212 Identities=37% Similarity=0.552 Sum_probs=166.7
Q ss_pred HHHhhhccCchhHHHHhhCCCCCcEEE-----------EEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCc
Q psy4494 10 YLNLWRTSFYQVSIAFGLGIDKPNVRF-----------VIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQS 78 (234)
Q Consensus 10 ~l~l~~at~p~~~i~~~~~~~~~~i~~-----------~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~ 78 (234)
+++-+...+|+.++++.+.+..+.++. .+.....++.|++|.++.+. +...++..+.+. .....++
T Consensus 156 ~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~-~~~~q~~fi~~~--~~~~~~~ 232 (590)
T COG0514 156 RLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKG-EPSDQLAFLATV--LPQLSKS 232 (590)
T ss_pred HHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcc-cHHHHHHHHHhh--ccccCCC
Confidence 344455555554444444443333221 12234567889999998776 333333333331 1335677
Q ss_pred EEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHh
Q psy4494 79 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSME 140 (234)
Q Consensus 79 ~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~ 140 (234)
+||||.|++.+|.++++|...|+.+..|||+|+.++ |.|||||||.|||++|||||+|.+++
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~E 312 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIE 312 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHH
Confidence 999999999999999999999999999999999877 99999999999999999999999999
Q ss_pred HhhhhhcccccCCCceEEEEEeecccHHHhhhhHHhh-------hhhhHhHHHHHHHhhcCcccHHHHHHhHcCCCCCCC
Q psy4494 141 NFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVFDQ-------QTGLANLYNIVSYCLDQTRCRRAIIASYFDEAWSDT 213 (234)
Q Consensus 141 ~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~Crr~~l~~~f~e~~~~~ 213 (234)
+|+|++|||||||.++.|+++|++.|......++... +....+++.|..|++ +..|||..++.||||. .+.
T Consensus 313 sYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~~~~~~~~~~~~kl~~~~~~~e-~~~crr~~ll~yfge~-~~~ 390 (590)
T COG0514 313 SYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSKPDEEQKQIELAKLRQMIAYCE-TQTCRRLVLLKYFGED-EPE 390 (590)
T ss_pred HHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcc-cccchHHHHHHhcCcc-ccc
Confidence 9999999999999999999999999988877776653 233478999999996 5669999999999998 667
Q ss_pred ccCCCCCCCCCCCC
Q psy4494 214 ECRGMCDHCRGGRR 227 (234)
Q Consensus 214 ~c~~~Cd~C~~~~~ 227 (234)
+| +.||+|...+.
T Consensus 391 ~c-~~c~~c~~~~~ 403 (590)
T COG0514 391 PC-GNCDNCLDTPK 403 (590)
T ss_pred cc-cCCCcccCcch
Confidence 79 67999998873
No 2
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=4.4e-38 Score=300.95 Aligned_cols=181 Identities=38% Similarity=0.780 Sum_probs=154.2
Q ss_pred CCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh--------
Q psy4494 43 SKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------- 114 (234)
Q Consensus 43 ~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~-------- 114 (234)
..+.|++|.|.++. ...+..|.+++.......++||||+|++.|+.++..|+..|+.+..|||+|++++
T Consensus 650 f~RpNL~y~Vv~k~---kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F 726 (1195)
T PLN03137 650 FNRPNLWYSVVPKT---KKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQW 726 (1195)
T ss_pred cCccceEEEEeccc---hhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHH
Confidence 34567889887653 2234566677765445678999999999999999999999999999999999877
Q ss_pred ----------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHHHhhhhHHhh-------
Q psy4494 115 ----------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVFDQ------- 177 (234)
Q Consensus 115 ----------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~~~~~------- 177 (234)
|+++|||||+|+|++||||++|.++++|+||+|||||+|.+|.|++||...|+.....++...
T Consensus 727 ~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~~~~~~~s~~ 806 (1195)
T PLN03137 727 SKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGGVEQSPM 806 (1195)
T ss_pred hcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHhccccccchh
Confidence 999999999999999999999999999999999999999999999999999988877776421
Q ss_pred --------------hhhhHhHHHHHHHhhcCcccHHHHHHhHcCCCCCCCccCCCCCCCCCCC
Q psy4494 178 --------------QTGLANLYNIVSYCLDQTRCRRAIIASYFDEAWSDTECRGMCDHCRGGR 226 (234)
Q Consensus 178 --------------~~~~~~l~~~~~~~~~~~~Crr~~l~~~f~e~~~~~~c~~~Cd~C~~~~ 226 (234)
....++|.+|..||++...|||+.|+.||||.+.+..|...||||....
T Consensus 807 ~~~~~r~~~s~~~~e~~~~~L~~m~~yce~~~~CRR~~lL~yFGE~~~~~~C~~~CDnC~~~~ 869 (1195)
T PLN03137 807 AMGYNRMASSGRILETNTENLLRMVSYCENEVDCRRFLQLVHFGEKFDSTNCKKTCDNCSSSK 869 (1195)
T ss_pred hhhhcccchhHHHHHHHHHHHHHHHHHHhChHhhHHHHHHHHcccccCccCCCCCCCCCCCCC
Confidence 1133678999999976568999999999999976667966799999877
No 3
>KOG0353|consensus
Probab=100.00 E-value=4e-37 Score=262.64 Aligned_cols=218 Identities=44% Similarity=0.783 Sum_probs=194.1
Q ss_pred HHHHhhhccCchhHHHHhhCCCCCcEEEEE-----------eeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCC
Q psy4494 9 AYLNLWRTSFYQVSIAFGLGIDKPNVRFVI-----------HHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQ 77 (234)
Q Consensus 9 a~l~l~~at~p~~~i~~~~~~~~~~i~~~~-----------~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~ 77 (234)
.-|+++...||.+++.-.+.....+|--.+ ....-.+.|++|+|+.+|++.++..+.+.++++..+.++
T Consensus 239 ~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gq 318 (695)
T KOG0353|consen 239 KALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQ 318 (695)
T ss_pred HHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCC
Confidence 347778888888776555444333321110 112234678999999999999999999999999888899
Q ss_pred cEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCH
Q psy4494 78 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSM 139 (234)
Q Consensus 78 ~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~ 139 (234)
.+||||-|++.||.++..|+.+|+.+.+||+.|.++. |.++|||||.|+|++|||..+|.++
T Consensus 319 sgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksi 398 (695)
T KOG0353|consen 319 SGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSI 398 (695)
T ss_pred cceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhH
Confidence 9999999999999999999999999999999999877 9999999999999999999999999
Q ss_pred hHhhh-------------------------------------------hhcccccCCCceEEEEEeecccHHHhhhhHHh
Q psy4494 140 ENFYQ-------------------------------------------ESGRAGRDGQIAHCILYYRLPDVFKLSSMVFD 176 (234)
Q Consensus 140 ~~y~q-------------------------------------------r~GR~gR~g~~~~~i~~~~~~d~~~~~~~~~~ 176 (234)
+.|+| +.||+||++.++.||+||...|+.+.+.+++.
T Consensus 399 enyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ssmv~~ 478 (695)
T KOG0353|consen 399 ENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKISSMVQM 478 (695)
T ss_pred HHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhHHHHHHH
Confidence 99999 89999999999999999999999999999999
Q ss_pred hhhhhHhHHHHHHHhhcCcccHHHHHHhHcCCCCCCCccCCCCCCCCCCC
Q psy4494 177 QQTGLANLYNIVSYCLDQTRCRRAIIASYFDEAWSDTECRGMCDHCRGGR 226 (234)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~Crr~~l~~~f~e~~~~~~c~~~Cd~C~~~~ 226 (234)
+..+.++|.+|++|+.+.+.|||..+.++|+|..++..|+.+||+|....
T Consensus 479 e~~g~q~ly~mv~y~~d~s~crrv~laehfde~w~~~~c~k~cd~c~~~n 528 (695)
T KOG0353|consen 479 ENTGIQKLYEMVRYAADISKCRRVKLAEHFDEAWEPEACNKMCDNCCKDN 528 (695)
T ss_pred HhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCHHHHHHHhhhhccCc
Confidence 99999999999999999999999999999999999999999999998766
No 4
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.5e-34 Score=259.02 Aligned_cols=205 Identities=35% Similarity=0.595 Sum_probs=157.4
Q ss_pred hhccCchh---HHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHHHH
Q psy4494 14 WRTSFYQV---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECE 90 (234)
Q Consensus 14 ~~at~p~~---~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~ 90 (234)
++||.+.. .+...+++..+.+. .....+.|.+|.+..+.. ..+..+.+++.....++++||||+|++.++
T Consensus 168 lTAT~~~~~~~di~~~l~l~~~~~~----~~s~~r~nl~~~v~~~~~---~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e 240 (470)
T TIGR00614 168 LTATASPSVREDILRQLNLKNPQIF----CTSFDRPNLYYEVRRKTP---KILEDLLRFIRKEFKGKSGIIYCPSRKKSE 240 (470)
T ss_pred EecCCCHHHHHHHHHHcCCCCCcEE----eCCCCCCCcEEEEEeCCc---cHHHHHHHHHHHhcCCCceEEEECcHHHHH
Confidence 45555543 33444455544332 123345677888876643 245556666654445677899999999999
Q ss_pred HHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccC
Q psy4494 91 DLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRD 152 (234)
Q Consensus 91 ~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~ 152 (234)
.++..|+..|+.+..|||+|++++ |++++||||+|+|++||||++|.++++|+||+||+||+
T Consensus 241 ~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~ 320 (470)
T TIGR00614 241 QVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRD 320 (470)
T ss_pred HHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCC
Confidence 999999999999999999999876 99999999999999999999999999999999999999
Q ss_pred CCceEEEEEeecccHHHhhhhHHhhhh------hhHhHHHHHHHhhcCcccHHHHHHhHcCCCCC-----CCccCCCCCC
Q psy4494 153 GQIAHCILYYRLPDVFKLSSMVFDQQT------GLANLYNIVSYCLDQTRCRRAIIASYFDEAWS-----DTECRGMCDH 221 (234)
Q Consensus 153 g~~~~~i~~~~~~d~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~Crr~~l~~~f~e~~~-----~~~c~~~Cd~ 221 (234)
|.+|.+++|+++.|...+..++..... ..+.+++|..|+ ++..|||+.|++||||... ...|..+|||
T Consensus 321 G~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~crr~~l~~~f~~~~~~~~~~~~~~~~~C~~ 399 (470)
T TIGR00614 321 GLPSECHLFYAPADINRLRRLLMEEPDGQQRTYKLKLYEMMEYCL-NSSTCRRLILLSHFGEKQLNKSFGIMGTEKCCDN 399 (470)
T ss_pred CCCceEEEEechhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh-ccccCHHHHHHHHcCCcccccccccccCCCCCCC
Confidence 999999999999999888877654322 124456666665 6889999999999999632 2235567888
Q ss_pred CCCCC
Q psy4494 222 CRGGR 226 (234)
Q Consensus 222 C~~~~ 226 (234)
|....
T Consensus 400 C~~~~ 404 (470)
T TIGR00614 400 CCKRL 404 (470)
T ss_pred CCCcc
Confidence 87665
No 5
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.3e-33 Score=262.16 Aligned_cols=201 Identities=34% Similarity=0.598 Sum_probs=157.2
Q ss_pred hhccCchh---HHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHHHH
Q psy4494 14 WRTSFYQV---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECE 90 (234)
Q Consensus 14 ~~at~p~~---~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~ 90 (234)
++||.+.. .+...+++..|.+.. ....+.|..|.+..+.. .+..+..++.. ..+.++||||+|++.|+
T Consensus 180 lTAT~~~~~~~di~~~l~l~~~~~~~----~~~~r~nl~~~v~~~~~----~~~~l~~~l~~-~~~~~~IIFc~tr~~~e 250 (607)
T PRK11057 180 LTATADDTTRQDIVRLLGLNDPLIQI----SSFDRPNIRYTLVEKFK----PLDQLMRYVQE-QRGKSGIIYCNSRAKVE 250 (607)
T ss_pred EecCCChhHHHHHHHHhCCCCeEEEE----CCCCCCcceeeeeeccc----hHHHHHHHHHh-cCCCCEEEEECcHHHHH
Confidence 45555543 233444444443322 12234566777755432 34445555543 35678999999999999
Q ss_pred HHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccC
Q psy4494 91 DLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRD 152 (234)
Q Consensus 91 ~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~ 152 (234)
.++..|+..|+.+..|||+|++++ |++++||||+|+|++|||||+|.++++|+||+|||||+
T Consensus 251 ~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~ 330 (607)
T PRK11057 251 DTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRD 330 (607)
T ss_pred HHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCC
Confidence 999999999999999999999876 99999999999999999999999999999999999999
Q ss_pred CCceEEEEEeecccHHHhhhhHHhhh------hhhHhHHHHHHHhhcCcccHHHHHHhHcCCCCCCCccCCCCCCCCCCC
Q psy4494 153 GQIAHCILYYRLPDVFKLSSMVFDQQ------TGLANLYNIVSYCLDQTRCRRAIIASYFDEAWSDTECRGMCDHCRGGR 226 (234)
Q Consensus 153 g~~~~~i~~~~~~d~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~Crr~~l~~~f~e~~~~~~c~~~Cd~C~~~~ 226 (234)
|.+|.+++|+++.|...+..++.... ....++..|..|++ +..|||+.|++||||... ..| ++||+|....
T Consensus 331 G~~~~~ill~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~Crr~~~l~yf~e~~~-~~c-~~cd~c~~~~ 407 (607)
T PRK11057 331 GLPAEAMLFYDPADMAWLRRCLEEKPAGQQQDIERHKLNAMGAFAE-AQTCRRLVLLNYFGEGRQ-EPC-GNCDICLDPP 407 (607)
T ss_pred CCCceEEEEeCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh-cccCHHHHHHHHhCCCCC-CCC-CCCCCCCCcc
Confidence 99999999999999887776664321 23457899999996 678999999999999864 347 6899998865
No 6
>KOG0351|consensus
Probab=100.00 E-value=9e-34 Score=270.43 Aligned_cols=199 Identities=40% Similarity=0.716 Sum_probs=171.3
Q ss_pred HHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCC
Q psy4494 22 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGL 101 (234)
Q Consensus 22 ~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~ 101 (234)
+++..+++..+. +......+.|++|+|.++... +....+...++...+.+++||||.++++|+.++..|++.|+
T Consensus 437 DIi~~L~l~~~~----~~~~sfnR~NL~yeV~~k~~~--~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~ 510 (941)
T KOG0351|consen 437 DVIRSLGLRNPE----LFKSSFNRPNLKYEVSPKTDK--DALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGK 510 (941)
T ss_pred HHHHHhCCCCcc----eecccCCCCCceEEEEeccCc--cchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhch
Confidence 455555555544 335567788999999887642 23445555666666789999999999999999999999999
Q ss_pred ceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEee
Q psy4494 102 RVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYR 163 (234)
Q Consensus 102 ~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~ 163 (234)
++.+||+||++++ |.|||||||.|||+.||||++|++++.|+|++|||||+|.++.|++||+
T Consensus 511 ~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~ 590 (941)
T KOG0351|consen 511 SAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYG 590 (941)
T ss_pred hhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecc
Confidence 9999999999987 9999999999999999999999999999999999999999999999999
Q ss_pred cccHHHhhhhHHhhh--------hhhHhHHHHHHHhhcCcccHHHHHHhHcCCCCCCCccC--CCCCCCCCCC
Q psy4494 164 LPDVFKLSSMVFDQQ--------TGLANLYNIVSYCLDQTRCRRAIIASYFDEAWSDTECR--GMCDHCRGGR 226 (234)
Q Consensus 164 ~~d~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~Crr~~l~~~f~e~~~~~~c~--~~Cd~C~~~~ 226 (234)
..|...+..++..+. .....+.+|..||++.+.|||+.++.||||.+....|. ..||+|....
T Consensus 591 ~~D~~~l~~ll~s~~~~~~~~~~~~~~~l~~~~~yCen~t~crr~~~l~~fge~f~~~~c~~~k~cd~C~~~~ 663 (941)
T KOG0351|consen 591 YADISELRRLLTSGNRLSGVKKFTRLLELVQVVTYCENETDCRRKQILEYFGEEFDSKHCKKHKTCDNCRESL 663 (941)
T ss_pred hhHHHHHHHHHHccccccchhhccchhhHHHHHHhhcCccchhHHHHHHhcccccchhhccCCchHHHhhccc
Confidence 999999888876651 23467899999999999999999999999998888897 5899999887
No 7
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.5e-32 Score=256.50 Aligned_cols=176 Identities=41% Similarity=0.667 Sum_probs=148.7
Q ss_pred CCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh--------
Q psy4494 43 SKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------- 114 (234)
Q Consensus 43 ~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~-------- 114 (234)
..+.|.+|.+..+.. +...+.+++... .+.++||||+|++.++.+++.|...|+.+..|||+|++++
T Consensus 196 ~~r~nl~~~v~~~~~----~~~~l~~~l~~~-~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F 270 (591)
T TIGR01389 196 FDRPNLRFSVVKKNN----KQKFLLDYLKKH-RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDF 270 (591)
T ss_pred CCCCCcEEEEEeCCC----HHHHHHHHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHH
Confidence 445678888866532 344556666533 4678999999999999999999999999999999999866
Q ss_pred ----------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHHHhhhhHHhh-------
Q psy4494 115 ----------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVFDQ------- 177 (234)
Q Consensus 115 ----------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~~~~~------- 177 (234)
|++++||||+|+|++||||++|.++++|+||+|||||+|.++.++++|++.|......++...
T Consensus 271 ~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~~~~~~~~~~ 350 (591)
T TIGR01389 271 LYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIEQSEADDDYK 350 (591)
T ss_pred HcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHhccCCcHHHH
Confidence 999999999999999999999999999999999999999999999999999988877766541
Q ss_pred hhhhHhHHHHHHHhhcCcccHHHHHHhHcCCCCCCCccCCCCCCCCCCC
Q psy4494 178 QTGLANLYNIVSYCLDQTRCRRAIIASYFDEAWSDTECRGMCDHCRGGR 226 (234)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~Crr~~l~~~f~e~~~~~~c~~~Cd~C~~~~ 226 (234)
.....++++|..|++ +..|||..++.||||.. ...| +.||||....
T Consensus 351 ~~~~~~l~~~~~~~~-~~~c~r~~~~~~f~~~~-~~~c-~~cd~c~~~~ 396 (591)
T TIGR01389 351 QIEREKLRAMIAYCE-TQTCRRAYILRYFGENE-VEPC-GNCDNCLDPP 396 (591)
T ss_pred HHHHHHHHHHHHHHc-ccccHhHHHHHhcCCCC-CCCC-CCCCCCCCCC
Confidence 223467899999996 68999999999999974 3458 6899998765
No 8
>KOG0352|consensus
Probab=99.97 E-value=8.9e-31 Score=226.24 Aligned_cols=198 Identities=37% Similarity=0.674 Sum_probs=155.3
Q ss_pred HHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhc------------CCCcEEEEecchHHH
Q psy4494 22 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRF------------RNQSGIIYTTSIKEC 89 (234)
Q Consensus 22 ~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~------------~~~~~iIf~~t~~~~ 89 (234)
++.+.+.+..|... ..++.-+-|++|.+..+..- ++.+..|.++-...+ ..+.+||||.|++.|
T Consensus 193 Di~~qL~L~~PVAi---FkTP~FR~NLFYD~~~K~~I-~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~c 268 (641)
T KOG0352|consen 193 DIAFQLKLRNPVAI---FKTPTFRDNLFYDNHMKSFI-TDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNEC 268 (641)
T ss_pred HHHHHHhhcCcHHh---ccCcchhhhhhHHHHHHHHh-hhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHH
Confidence 45555555544222 23445556788877554322 334555555543221 135689999999999
Q ss_pred HHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhccccc
Q psy4494 90 EDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGR 151 (234)
Q Consensus 90 ~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR 151 (234)
|.++-.|..+|+.+.+||+++...+ |..||||+|.|+|++||||++|+++..|+|+.|||||
T Consensus 269 Eq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGR 348 (641)
T KOG0352|consen 269 EQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGR 348 (641)
T ss_pred HHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhcccccc
Confidence 9999999999999999999998766 9999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeecccHHHhhhhHHhhhh--------------hhHhHHHHHHHhhcCcccHHHHHHhHcCCCCCCCccCC
Q psy4494 152 DGQIAHCILYYRLPDVFKLSSMVFDQQT--------------GLANLYNIVSYCLDQTRCRRAIIASYFDEAWSDTECRG 217 (234)
Q Consensus 152 ~g~~~~~i~~~~~~d~~~~~~~~~~~~~--------------~~~~l~~~~~~~~~~~~Crr~~l~~~f~e~~~~~~c~~ 217 (234)
+|.++.|-+||+.+|...+.-++..+.. .....+.|+.||+ ...||+..+.+|||+... +|.+
T Consensus 349 DGk~SyCRLYYsR~D~~~i~FLi~~e~aklrek~~ke~~~k~~I~~F~k~~eFCE-~~~CRH~~ia~fFgD~~p--~ckg 425 (641)
T KOG0352|consen 349 DGKRSYCRLYYSRQDKNALNFLVSGELAKLREKAKKEMQIKSIITGFAKMLEFCE-SARCRHVSIASFFDDTEC--PCKT 425 (641)
T ss_pred CCCccceeeeecccchHHHHHHHhhHHHHHHHhcchhhhHHHHHHHHHHHHHHHH-HcccchHHHHHhcCCCCC--CCCC
Confidence 9999999999999998887766654321 1123588999996 589999999999999753 5779
Q ss_pred CCCCCCCCC
Q psy4494 218 MCDHCRGGR 226 (234)
Q Consensus 218 ~Cd~C~~~~ 226 (234)
+||+|.+..
T Consensus 426 ~cd~c~~p~ 434 (641)
T KOG0352|consen 426 NCDYCRDPT 434 (641)
T ss_pred CccccCCHH
Confidence 999999865
No 9
>KOG0333|consensus
Probab=99.94 E-value=5e-27 Score=207.17 Aligned_cols=158 Identities=20% Similarity=0.276 Sum_probs=129.9
Q ss_pred HHhhhccCchh--HHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHH
Q psy4494 11 LNLWRTSFYQV--SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKE 88 (234)
Q Consensus 11 l~l~~at~p~~--~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~ 88 (234)
.-+|.+|.|.+ -++...-.++..+.......+..++++....+. .+++...|..++.+. ...++|||+|+++.
T Consensus 455 T~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~----ed~k~kkL~eil~~~-~~ppiIIFvN~kk~ 529 (673)
T KOG0333|consen 455 TVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVS----EDEKRKKLIEILESN-FDPPIIIFVNTKKG 529 (673)
T ss_pred EEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEec----chHHHHHHHHHHHhC-CCCCEEEEEechhh
Confidence 34688888875 344444455555666655666667776666533 345677888888754 56789999999999
Q ss_pred HHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccc
Q psy4494 89 CEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAG 150 (234)
Q Consensus 89 ~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~g 150 (234)
|+.||+.|.+.|+.+..|||+.++++ |+++|||||+|+|.+|||||+++++++|+||+||+|
T Consensus 530 ~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTg 609 (673)
T KOG0333|consen 530 ADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTG 609 (673)
T ss_pred HHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhcccc
Confidence 99999999999999999999999987 999999999999999999999999999999999999
Q ss_pred cCCCceEEEEEeecccHHHhhhh
Q psy4494 151 RDGQIAHCILYYRLPDVFKLSSM 173 (234)
Q Consensus 151 R~g~~~~~i~~~~~~d~~~~~~~ 173 (234)
|+|+.|+++.|+++.|-..+..+
T Consensus 610 RAGk~GtaiSflt~~dt~v~ydL 632 (673)
T KOG0333|consen 610 RAGKSGTAISFLTPADTAVFYDL 632 (673)
T ss_pred ccccCceeEEEeccchhHHHHHH
Confidence 99999999999999886554443
No 10
>KOG0330|consensus
Probab=99.94 E-value=3.6e-27 Score=201.76 Aligned_cols=164 Identities=16% Similarity=0.213 Sum_probs=133.9
Q ss_pred HHHHHhhhccCchhH-HHHhhCCCCC-cEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecc
Q psy4494 8 IAYLNLWRTSFYQVS-IAFGLGIDKP-NVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTS 85 (234)
Q Consensus 8 ~a~l~l~~at~p~~~-i~~~~~~~~~-~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t 85 (234)
..++-||+||+|+.. -......+.| .|.+.-.++.-..+.++|..++...+... |+.++.. ..+.+.||||+|
T Consensus 235 erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~y----LV~ll~e-~~g~s~iVF~~t 309 (476)
T KOG0330|consen 235 ERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTY----LVYLLNE-LAGNSVIVFCNT 309 (476)
T ss_pred cceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchh----HHHHHHh-hcCCcEEEEEec
Confidence 345668999999862 2234444443 45554456666777888888776655443 4444442 356889999999
Q ss_pred hHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhc
Q psy4494 86 IKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESG 147 (234)
Q Consensus 86 ~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~G 147 (234)
...++.++-.|+..|+.+..+||+|+++. |++.+||+|+|+|++|||||+|.+..+|+||+|
T Consensus 310 ~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvG 389 (476)
T KOG0330|consen 310 CNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVG 389 (476)
T ss_pred cchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcc
Confidence 99999999999999999999999999977 999999999999999999999999999999999
Q ss_pred ccccCCCceEEEEEeecccHHHhhhhHHh
Q psy4494 148 RAGRDGQIAHCILYYRLPDVFKLSSMVFD 176 (234)
Q Consensus 148 R~gR~g~~~~~i~~~~~~d~~~~~~~~~~ 176 (234)
|+||+|++|.+|.+++.+|+..+.+|...
T Consensus 390 RtaRaGrsG~~ItlVtqyDve~~qrIE~~ 418 (476)
T KOG0330|consen 390 RTARAGRSGKAITLVTQYDVELVQRIEHA 418 (476)
T ss_pred cccccCCCcceEEEEehhhhHHHHHHHHH
Confidence 99999999999999999999988777543
No 11
>KOG0331|consensus
Probab=99.94 E-value=2.9e-27 Score=212.12 Aligned_cols=163 Identities=17% Similarity=0.269 Sum_probs=127.0
Q ss_pred HHHhhhccCchhHH--HHhhCCCCCcEEEEEee--ccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhc--CCCcEEEEe
Q psy4494 10 YLNLWRTSFYQVSI--AFGLGIDKPNVRFVIHH--CLSKSMENFYQVRIKPAAQKDCLDELADLMSRRF--RNQSGIIYT 83 (234)
Q Consensus 10 ~l~l~~at~p~~~i--~~~~~~~~~~i~~~~~~--~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~--~~~~~iIf~ 83 (234)
|+-+|++|+|.... +...-.++..+.+.-.. ...+++.+...+.. ..++...|.++|.+.. +..++||||
T Consensus 273 Qtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~----~~~K~~~l~~lL~~~~~~~~~KvIIFc 348 (519)
T KOG0331|consen 273 QTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD----ETAKLRKLGKLLEDISSDSEGKVIIFC 348 (519)
T ss_pred cEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC----HHHHHHHHHHHHHHHhccCCCcEEEEe
Confidence 67899999999743 22222244444433222 22334444544432 3455566666665443 567899999
Q ss_pred cchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhh
Q psy4494 84 TSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQE 145 (234)
Q Consensus 84 ~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr 145 (234)
+|++.|++|+..|+..++.+..+||+.++++ |++++||+|+|+|++|||||+|.++++|+||
T Consensus 349 ~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHR 428 (519)
T KOG0331|consen 349 ETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHR 428 (519)
T ss_pred cchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhh
Confidence 9999999999999999999999999999988 9999999999999999999999999999999
Q ss_pred hcccccCCCceEEEEEeecccHHHhhhhHHh
Q psy4494 146 SGRAGRDGQIAHCILYYRLPDVFKLSSMVFD 176 (234)
Q Consensus 146 ~GR~gR~g~~~~~i~~~~~~d~~~~~~~~~~ 176 (234)
+||+||+|+.|.+++|++..+......++..
T Consensus 429 iGRTGRa~~~G~A~tfft~~~~~~a~~l~~~ 459 (519)
T KOG0331|consen 429 IGRTGRAGKKGTAITFFTSDNAKLARELIKV 459 (519)
T ss_pred cCccccCCCCceEEEEEeHHHHHHHHHHHHH
Confidence 9999999999999999999888776665543
No 12
>KOG0328|consensus
Probab=99.94 E-value=2.9e-27 Score=195.27 Aligned_cols=170 Identities=20% Similarity=0.248 Sum_probs=133.9
Q ss_pred chHHHHHHHhhhccCchhHH--HHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEE
Q psy4494 4 LLYTIAYLNLWRTSFYQVSI--AFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGII 81 (234)
Q Consensus 4 ~~~~~a~l~l~~at~p~~~i--~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iI 81 (234)
++.+-+|.-++|||+|.... ......||..+-+.-..-+...+.+||..+.++ +.|...|.++.. .+.-.+++|
T Consensus 196 ~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~E---ewKfdtLcdLYd-~LtItQavI 271 (400)
T KOG0328|consen 196 YLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKE---EWKFDTLCDLYD-TLTITQAVI 271 (400)
T ss_pred hCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechh---hhhHhHHHHHhh-hhehheEEE
Confidence 34445667789999999733 333334443333222233344577877765443 346666666653 345667999
Q ss_pred EecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhh
Q psy4494 82 YTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFY 143 (234)
Q Consensus 82 f~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~ 143 (234)
||||++.++.|.+.|++..+.+..+||+|.+++ |++.+||+|+|.|.+|||||+|.+.+.|+
T Consensus 272 FcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YI 351 (400)
T KOG0328|consen 272 FCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYI 351 (400)
T ss_pred EecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHh
Confidence 999999999999999999999999999999988 99999999999999999999999999999
Q ss_pred hhhcccccCCCceEEEEEeecccHHHhhhhHHhh
Q psy4494 144 QESGRAGRDGQIAHCILYYRLPDVFKLSSMVFDQ 177 (234)
Q Consensus 144 qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~~~~~ 177 (234)
||+||.||.|++|.+|.|+...|+..+..+.+.-
T Consensus 352 HRIGRSGRFGRkGvainFVk~~d~~~lrdieq~y 385 (400)
T KOG0328|consen 352 HRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYY 385 (400)
T ss_pred hhhccccccCCcceEEEEecHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887766443
No 13
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.3e-26 Score=212.69 Aligned_cols=162 Identities=23% Similarity=0.337 Sum_probs=130.6
Q ss_pred HHHHhhhccCchh--HHHHhhCCCCCcEEEEEeec--cCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEec
Q psy4494 9 AYLNLWRTSFYQV--SIAFGLGIDKPNVRFVIHHC--LSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTT 84 (234)
Q Consensus 9 a~l~l~~at~p~~--~i~~~~~~~~~~i~~~~~~~--~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~ 84 (234)
-|..+||||+|.. .++.....++..+.+..... ....+.++|..+... .+++..|..++... ...++||||+
T Consensus 206 ~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~---~~k~~~L~~ll~~~-~~~~~IVF~~ 281 (513)
T COG0513 206 RQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESE---EEKLELLLKLLKDE-DEGRVIVFVR 281 (513)
T ss_pred cEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCH---HHHHHHHHHHHhcC-CCCeEEEEeC
Confidence 5667899999995 22333333555555543333 556677777664432 24788888888743 4557999999
Q ss_pred chHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhh
Q psy4494 85 SIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQES 146 (234)
Q Consensus 85 t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~ 146 (234)
|++.++.++..|...|+.+..+||++++++ |++++||||+|+|++|||||+|.+.++|+||+
T Consensus 282 tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRi 361 (513)
T COG0513 282 TKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRI 361 (513)
T ss_pred cHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheecc
Confidence 999999999999999999999999999987 99999999999999999999999999999999
Q ss_pred cccccCCCceEEEEEeecc-cHHHhhhhH
Q psy4494 147 GRAGRDGQIAHCILYYRLP-DVFKLSSMV 174 (234)
Q Consensus 147 GR~gR~g~~~~~i~~~~~~-d~~~~~~~~ 174 (234)
||+||+|+.|.+++|+.+. |...+..+.
T Consensus 362 GRTgRaG~~G~ai~fv~~~~e~~~l~~ie 390 (513)
T COG0513 362 GRTGRAGRKGVAISFVTEEEEVKKLKRIE 390 (513)
T ss_pred CccccCCCCCeEEEEeCcHHHHHHHHHHH
Confidence 9999999999999999985 666555543
No 14
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.91 E-value=5.1e-24 Score=191.80 Aligned_cols=157 Identities=17% Similarity=0.234 Sum_probs=119.3
Q ss_pred HhhhccCchhHH-HHhhCC-CCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHHH
Q psy4494 12 NLWRTSFYQVSI-AFGLGI-DKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKEC 89 (234)
Q Consensus 12 ~l~~at~p~~~i-~~~~~~-~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~ 89 (234)
-+||||++.... .....+ ++..+.+.........+...+.. ....++...|..++... ...++||||+|++.|
T Consensus 194 ~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~----~~~~~k~~~l~~ll~~~-~~~~~lVF~~t~~~~ 268 (423)
T PRK04837 194 MLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFY----PSNEEKMRLLQTLIEEE-WPDRAIIFANTKHRC 268 (423)
T ss_pred EEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEe----CCHHHHHHHHHHHHHhc-CCCeEEEEECCHHHH
Confidence 367888886522 222222 33233322222222333333332 23355777777777643 567899999999999
Q ss_pred HHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhccccc
Q psy4494 90 EDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGR 151 (234)
Q Consensus 90 ~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR 151 (234)
+.++..|...|+.+..+||++++++ |++++||||+|+|++|||||+|.+..+|+||+||+||
T Consensus 269 ~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR 348 (423)
T PRK04837 269 EEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGR 348 (423)
T ss_pred HHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccC
Confidence 9999999999999999999999876 9999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeecccHHHhhhh
Q psy4494 152 DGQIAHCILYYRLPDVFKLSSM 173 (234)
Q Consensus 152 ~g~~~~~i~~~~~~d~~~~~~~ 173 (234)
+|+.|.+++|+.+.|...+..+
T Consensus 349 ~G~~G~ai~~~~~~~~~~~~~i 370 (423)
T PRK04837 349 AGASGHSISLACEEYALNLPAI 370 (423)
T ss_pred CCCCeeEEEEeCHHHHHHHHHH
Confidence 9999999999998877665544
No 15
>PTZ00110 helicase; Provisional
Probab=99.91 E-value=1.5e-23 Score=193.97 Aligned_cols=185 Identities=16% Similarity=0.224 Sum_probs=130.7
Q ss_pred HHhhhccCchhHHHHhhC-CCCCcEEEEEee---ccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhc-CCCcEEEEecc
Q psy4494 11 LNLWRTSFYQVSIAFGLG-IDKPNVRFVIHH---CLSKSMENFYQVRIKPAAQKDCLDELADLMSRRF-RNQSGIIYTTS 85 (234)
Q Consensus 11 l~l~~at~p~~~i~~~~~-~~~~~i~~~~~~---~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~-~~~~~iIf~~t 85 (234)
+-+|+||+|......... .....+.+.+.. .....+.+.+.+.. ..++...|.+++.... ...++||||+|
T Consensus 311 ~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~----~~~k~~~L~~ll~~~~~~~~k~LIF~~t 386 (545)
T PTZ00110 311 TLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVE----EHEKRGKLKMLLQRIMRDGDKILIFVET 386 (545)
T ss_pred EEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEe----chhHHHHHHHHHHHhcccCCeEEEEecC
Confidence 356899998753222111 111123333221 12233444444432 2345555666655433 46789999999
Q ss_pred hHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhc
Q psy4494 86 IKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESG 147 (234)
Q Consensus 86 ~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~G 147 (234)
++.|+.++..|+..++.+..+||++++++ |++++||||+|+|++|||||+|.++++|+||+|
T Consensus 387 ~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiG 466 (545)
T PTZ00110 387 KKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIG 466 (545)
T ss_pred hHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhc
Confidence 99999999999999999999999999876 999999999999999999999999999999999
Q ss_pred ccccCCCceEEEEEeecccHHHhhhhHHhhhhh----hHhHHHHHHHhhcCcccHH
Q psy4494 148 RAGRDGQIAHCILYYRLPDVFKLSSMVFDQQTG----LANLYNIVSYCLDQTRCRR 199 (234)
Q Consensus 148 R~gR~g~~~~~i~~~~~~d~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~Crr 199 (234)
|+||+|+.|.+++|+++.|......++..-... ...|..|.....+...|++
T Consensus 467 RtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~~~~~~~~~ 522 (545)
T PTZ00110 467 RTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNERSNGTERRR 522 (545)
T ss_pred ccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHhcCCccccc
Confidence 999999999999999998877666554432221 2455566555444446663
No 16
>KOG0345|consensus
Probab=99.91 E-value=3.7e-24 Score=187.03 Aligned_cols=157 Identities=17% Similarity=0.241 Sum_probs=130.9
Q ss_pred HHHHHhhhccCchh-HHHHhhCCCCC-cEEEEEeec--cCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEe
Q psy4494 8 IAYLNLWRTSFYQV-SIAFGLGIDKP-NVRFVIHHC--LSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYT 83 (234)
Q Consensus 8 ~a~l~l~~at~p~~-~i~~~~~~~~~-~i~~~~~~~--~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~ 83 (234)
=-..||||||-.+. .-.+..|+..| .|.+..... .|.++..+|.++ ...+++..+.+++.. ...+++|||.
T Consensus 188 QRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~----~a~eK~~~lv~~L~~-~~~kK~iVFF 262 (567)
T KOG0345|consen 188 QRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVC----EADEKLSQLVHLLNN-NKDKKCIVFF 262 (567)
T ss_pred ccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEe----cHHHHHHHHHHHHhc-cccccEEEEe
Confidence 33579999998885 55777787443 344444333 677788888884 346788899999875 3678999999
Q ss_pred cchHHHHHHHHHHHHc--CCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhh
Q psy4494 84 TSIKECEDLREELRNR--GLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFY 143 (234)
Q Consensus 84 ~t~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~ 143 (234)
+|...++.....|... ...+..+||.|++.. |++++||||+|+|++||+||+|.+++.|+
T Consensus 263 ~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~Fv 342 (567)
T KOG0345|consen 263 PTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFV 342 (567)
T ss_pred cCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHH
Confidence 9999999999998765 678999999999985 99999999999999999999999999999
Q ss_pred hhhcccccCCCceEEEEEeecccHHH
Q psy4494 144 QESGRAGRDGQIAHCILYYRLPDVFK 169 (234)
Q Consensus 144 qr~GR~gR~g~~~~~i~~~~~~d~~~ 169 (234)
||+||+||.|+.|.||+|+.+.+...
T Consensus 343 HR~GRTaR~gr~G~Aivfl~p~E~aY 368 (567)
T KOG0345|consen 343 HRCGRTARAGREGNAIVFLNPREEAY 368 (567)
T ss_pred hhcchhhhccCccceEEEecccHHHH
Confidence 99999999999999999999966544
No 17
>KOG0326|consensus
Probab=99.90 E-value=1.2e-24 Score=182.44 Aligned_cols=171 Identities=22% Similarity=0.311 Sum_probs=138.6
Q ss_pred cchHHHHHHHhhhccCchhHHHHh-hCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEE
Q psy4494 3 ALLYTIAYLNLWRTSFYQVSIAFG-LGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGII 81 (234)
Q Consensus 3 ~~~~~~a~l~l~~at~p~~~i~~~-~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iI 81 (234)
+++...-|..|||||||-....|. --+.+|...--...-....+.+||..+.. .+|+.-|..++. .+.-...||
T Consensus 253 ~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e----~qKvhCLntLfs-kLqINQsII 327 (459)
T KOG0326|consen 253 SFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEE----RQKVHCLNTLFS-KLQINQSII 327 (459)
T ss_pred HhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeech----hhhhhhHHHHHH-HhcccceEE
Confidence 455566677889999998654444 33455644333344556778888887543 456666666654 345667899
Q ss_pred EecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhh
Q psy4494 82 YTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFY 143 (234)
Q Consensus 82 f~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~ 143 (234)
||||.+.+|-+|+.+.+.|+.+.++|+.|.++. |+.+-||||++.|+.|||||+|++.++|+
T Consensus 328 FCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYL 407 (459)
T KOG0326|consen 328 FCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYL 407 (459)
T ss_pred EeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHH
Confidence 999999999999999999999999999999877 99999999999999999999999999999
Q ss_pred hhhcccccCCCceEEEEEeecccHHHhhhhHHhhh
Q psy4494 144 QESGRAGRDGQIAHCILYYRLPDVFKLSSMVFDQQ 178 (234)
Q Consensus 144 qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~~~~~~ 178 (234)
||+||+||.|..|.||.+++.+|...+..+.++-.
T Consensus 408 HRIGRsGRFGhlGlAInLityedrf~L~~IE~eLG 442 (459)
T KOG0326|consen 408 HRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELG 442 (459)
T ss_pred HHccCCccCCCcceEEEEEehhhhhhHHHHHHHhc
Confidence 99999999999999999999999888777665443
No 18
>KOG0332|consensus
Probab=99.90 E-value=6.1e-24 Score=181.21 Aligned_cols=157 Identities=24% Similarity=0.291 Sum_probs=126.6
Q ss_pred HHHHHhhhccCchhHHHHhhCCCCC-c-EEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecc
Q psy4494 8 IAYLNLWRTSFYQVSIAFGLGIDKP-N-VRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTS 85 (234)
Q Consensus 8 ~a~l~l~~at~p~~~i~~~~~~~~~-~-i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t 85 (234)
-.|+-|||+||......|...+-+. + +.+.-.......+.++|.+... .++|...|.+++- -..-+++||||.|
T Consensus 264 ~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~---~~~K~~~l~~lyg-~~tigqsiIFc~t 339 (477)
T KOG0332|consen 264 NQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCAC---RDDKYQALVNLYG-LLTIGQSIIFCHT 339 (477)
T ss_pred cceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccc---hhhHHHHHHHHHh-hhhhhheEEEEee
Confidence 4577899999999888777776443 2 3333233344566777776444 4567777777543 2346789999999
Q ss_pred hHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCC------CHhH
Q psy4494 86 IKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSK------SMEN 141 (234)
Q Consensus 86 ~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~------~~~~ 141 (234)
++.+..++..|.+.|.++..+||+|..++ |++++||||++.|..|||||+|. +.+.
T Consensus 340 k~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~et 419 (477)
T KOG0332|consen 340 KATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYET 419 (477)
T ss_pred hhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHH
Confidence 99999999999999999999999999877 99999999999999999999995 6789
Q ss_pred hhhhhcccccCCCceEEEEEeecccHH
Q psy4494 142 FYQESGRAGRDGQIAHCILYYRLPDVF 168 (234)
Q Consensus 142 y~qr~GR~gR~g~~~~~i~~~~~~d~~ 168 (234)
|+||+||+||.|+.|.++.++...+..
T Consensus 420 YlHRiGRtGRFGkkG~a~n~v~~~~s~ 446 (477)
T KOG0332|consen 420 YLHRIGRTGRFGKKGLAINLVDDKDSM 446 (477)
T ss_pred HHHHhcccccccccceEEEeecccCcH
Confidence 999999999999999999999876543
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.90 E-value=7.5e-23 Score=186.05 Aligned_cols=158 Identities=18% Similarity=0.272 Sum_probs=120.7
Q ss_pred HHHhhhccCchhHH--HHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchH
Q psy4494 10 YLNLWRTSFYQVSI--AFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIK 87 (234)
Q Consensus 10 ~l~l~~at~p~~~i--~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~ 87 (234)
+.-+||||+|.... ......++..+.+.... ....+.++|.... ..++...+..++.. ..+.++||||+|++
T Consensus 180 q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~----~~~k~~~l~~ll~~-~~~~~~lVF~~t~~ 253 (460)
T PRK11776 180 QTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVS----PDERLPALQRLLLH-HQPESCVVFCNTKK 253 (460)
T ss_pred EEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeC----cHHHHHHHHHHHHh-cCCCceEEEECCHH
Confidence 34568999987532 22222233333332222 2233444443322 23467777777753 35678999999999
Q ss_pred HHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhccc
Q psy4494 88 ECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRA 149 (234)
Q Consensus 88 ~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~ 149 (234)
.++.++..|...++.+..+||++++.+ |+++++|+|+|+|++|||||+|.+..+|+||+||+
T Consensus 254 ~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRt 333 (460)
T PRK11776 254 ECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRT 333 (460)
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccc
Confidence 999999999999999999999999876 99999999999999999999999999999999999
Q ss_pred ccCCCceEEEEEeecccHHHhhhh
Q psy4494 150 GRDGQIAHCILYYRLPDVFKLSSM 173 (234)
Q Consensus 150 gR~g~~~~~i~~~~~~d~~~~~~~ 173 (234)
||+|+.|.+++|+.+.|...+..+
T Consensus 334 GR~g~~G~ai~l~~~~e~~~~~~i 357 (460)
T PRK11776 334 GRAGSKGLALSLVAPEEMQRANAI 357 (460)
T ss_pred cCCCCcceEEEEEchhHHHHHHHH
Confidence 999999999999999887665544
No 20
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.89 E-value=1.1e-22 Score=184.71 Aligned_cols=159 Identities=16% Similarity=0.222 Sum_probs=119.6
Q ss_pred HHhhhccCchhH--HHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHH
Q psy4494 11 LNLWRTSFYQVS--IAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKE 88 (234)
Q Consensus 11 l~l~~at~p~~~--i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~ 88 (234)
.-+|+||++... +...+..++..+.+.........+..++... +...+...+..++.. ....++||||+|++.
T Consensus 183 ~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~----~~~~k~~~l~~l~~~-~~~~~~lVF~~t~~~ 257 (456)
T PRK10590 183 NLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFV----DKKRKRELLSQMIGK-GNWQQVLVFTRTKHG 257 (456)
T ss_pred EEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEc----CHHHHHHHHHHHHHc-CCCCcEEEEcCcHHH
Confidence 346889988742 2222333333343332233334444444432 223445555555543 345789999999999
Q ss_pred HHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccc
Q psy4494 89 CEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAG 150 (234)
Q Consensus 89 ~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~g 150 (234)
++.+++.|...++.+..+||++++++ |+++++|||+|+|++||||++|.++.+|+||+||+|
T Consensus 258 ~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaG 337 (456)
T PRK10590 258 ANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTG 337 (456)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccc
Confidence 99999999999999999999999866 999999999999999999999999999999999999
Q ss_pred cCCCceEEEEEeecccHHHhhhhH
Q psy4494 151 RDGQIAHCILYYRLPDVFKLSSMV 174 (234)
Q Consensus 151 R~g~~~~~i~~~~~~d~~~~~~~~ 174 (234)
|+|..|.+++|+...|...+..+.
T Consensus 338 R~g~~G~ai~l~~~~d~~~~~~ie 361 (456)
T PRK10590 338 RAAATGEALSLVCVDEHKLLRDIE 361 (456)
T ss_pred cCCCCeeEEEEecHHHHHHHHHHH
Confidence 999999999999988876655443
No 21
>KOG0341|consensus
Probab=99.89 E-value=1e-23 Score=180.83 Aligned_cols=153 Identities=18% Similarity=0.280 Sum_probs=121.4
Q ss_pred HHHHhhhccCchh-HHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchH
Q psy4494 9 AYLNLWRTSFYQV-SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIK 87 (234)
Q Consensus 9 a~l~l~~at~p~~-~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~ 87 (234)
-|.-|||+|.|.. .+.+...+-+| |.+.+...-..++|..-+|.. .+.+.++-.|++.+++ ...+++|||..+.
T Consensus 358 RQTLLFSATMP~KIQ~FAkSALVKP-vtvNVGRAGAAsldViQevEy--VkqEaKiVylLeCLQK--T~PpVLIFaEkK~ 432 (610)
T KOG0341|consen 358 RQTLLFSATMPKKIQNFAKSALVKP-VTVNVGRAGAASLDVIQEVEY--VKQEAKIVYLLECLQK--TSPPVLIFAEKKA 432 (610)
T ss_pred hheeeeeccccHHHHHHHHhhcccc-eEEecccccccchhHHHHHHH--HHhhhhhhhHHHHhcc--CCCceEEEecccc
Confidence 3566899999986 55555566555 445555545555553322210 1234456666666664 3567999999999
Q ss_pred HHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhccc
Q psy4494 88 ECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRA 149 (234)
Q Consensus 88 ~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~ 149 (234)
.++.++++|--.|..+..+||+.++++ |++++-|+|+|+|.+|||||+|.++++|+||+||+
T Consensus 433 DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRT 512 (610)
T KOG0341|consen 433 DVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRT 512 (610)
T ss_pred ChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhccc
Confidence 999999999999999999999999987 99999999999999999999999999999999999
Q ss_pred ccCCCceEEEEEeeccc
Q psy4494 150 GRDGQIAHCILYYRLPD 166 (234)
Q Consensus 150 gR~g~~~~~i~~~~~~d 166 (234)
||.|+.|.+.+|++...
T Consensus 513 GRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 513 GRSGKTGIATTFINKNQ 529 (610)
T ss_pred CCCCCcceeeeeecccc
Confidence 99999999999998753
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.89 E-value=1.9e-22 Score=182.18 Aligned_cols=159 Identities=18% Similarity=0.220 Sum_probs=121.0
Q ss_pred HHHhhhccCchh---HHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecch
Q psy4494 10 YLNLWRTSFYQV---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSI 86 (234)
Q Consensus 10 ~l~l~~at~p~~---~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~ 86 (234)
++-+||||++.. .+...+..++..+...........+.++|... .....+...|..++.. ....++||||+|+
T Consensus 180 q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~---~~~~~k~~~l~~l~~~-~~~~~~lVF~~s~ 255 (434)
T PRK11192 180 QTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRA---DDLEHKTALLCHLLKQ-PEVTRSIVFVRTR 255 (434)
T ss_pred EEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEe---CCHHHHHHHHHHHHhc-CCCCeEEEEeCCh
Confidence 345688888753 22333333443343332223333444444432 2234567777777753 2567899999999
Q ss_pred HHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcc
Q psy4494 87 KECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGR 148 (234)
Q Consensus 87 ~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR 148 (234)
+.++.++..|+..++.+..+||+|++.+ |+++++|+|+|+|++|||||+|.+...|+||+||
T Consensus 256 ~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR 335 (434)
T PRK11192 256 ERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGR 335 (434)
T ss_pred HHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccc
Confidence 9999999999999999999999999876 9999999999999999999999999999999999
Q ss_pred cccCCCceEEEEEeecccHHHhhh
Q psy4494 149 AGRDGQIAHCILYYRLPDVFKLSS 172 (234)
Q Consensus 149 ~gR~g~~~~~i~~~~~~d~~~~~~ 172 (234)
+||+|..|.+++++...|...+.+
T Consensus 336 ~gR~g~~g~ai~l~~~~d~~~~~~ 359 (434)
T PRK11192 336 TGRAGRKGTAISLVEAHDHLLLGK 359 (434)
T ss_pred cccCCCCceEEEEecHHHHHHHHH
Confidence 999999999999998877765544
No 23
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.89 E-value=1.8e-22 Score=189.02 Aligned_cols=159 Identities=14% Similarity=0.230 Sum_probs=122.1
Q ss_pred HHHhhhccCchhH--HHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchH
Q psy4494 10 YLNLWRTSFYQVS--IAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIK 87 (234)
Q Consensus 10 ~l~l~~at~p~~~--i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~ 87 (234)
++.+||||+|... +......++..+.+.........+.+.|..+. ..++...|..++.. ....++||||+|+.
T Consensus 182 q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~----~~~k~~~L~~~L~~-~~~~~~IVF~~tk~ 256 (629)
T PRK11634 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW----GMRKNEALVRFLEA-EDFDAAIIFVRTKN 256 (629)
T ss_pred eEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEec----hhhHHHHHHHHHHh-cCCCCEEEEeccHH
Confidence 4567899998852 33333334444443322223333444444322 23466667777653 24578999999999
Q ss_pred HHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhccc
Q psy4494 88 ECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRA 149 (234)
Q Consensus 88 ~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~ 149 (234)
.++.++..|...|+.+..+||+|++.+ |+++++|||+|+|++|||||+|.++++|+||+||+
T Consensus 257 ~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRt 336 (629)
T PRK11634 257 ATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRT 336 (629)
T ss_pred HHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccc
Confidence 999999999999999999999999876 99999999999999999999999999999999999
Q ss_pred ccCCCceEEEEEeecccHHHhhhh
Q psy4494 150 GRDGQIAHCILYYRLPDVFKLSSM 173 (234)
Q Consensus 150 gR~g~~~~~i~~~~~~d~~~~~~~ 173 (234)
||.|+.|.+++|+.+.|...+..+
T Consensus 337 GRaGr~G~ai~~v~~~e~~~l~~i 360 (629)
T PRK11634 337 GRAGRAGRALLFVENRERRLLRNI 360 (629)
T ss_pred cCCCCcceEEEEechHHHHHHHHH
Confidence 999999999999998776555444
No 24
>KOG0342|consensus
Probab=99.89 E-value=1.1e-22 Score=178.66 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=131.3
Q ss_pred HHHHHhhhccCchh-HHHHhhCCCCCcEEEEEee----ccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEE
Q psy4494 8 IAYLNLWRTSFYQV-SIAFGLGIDKPNVRFVIHH----CLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIY 82 (234)
Q Consensus 8 ~a~l~l~~at~p~~-~i~~~~~~~~~~i~~~~~~----~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf 82 (234)
--|..|||||.|.. .-.+...+.+..+.+.+.. ...+++++-|.+.+.. ..+..+..++++....+++|||
T Consensus 261 ~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~----~~f~ll~~~LKk~~~~~KiiVF 336 (543)
T KOG0342|consen 261 QRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSD----SRFSLLYTFLKKNIKRYKIIVF 336 (543)
T ss_pred cceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecccc----chHHHHHHHHHHhcCCceEEEE
Confidence 34567899999985 3444444544444444432 3445677878885543 3366777788766555899999
Q ss_pred ecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhh
Q psy4494 83 TTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 144 (234)
Q Consensus 83 ~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~q 144 (234)
|+|...+..+++.|+...+++..+||++++.. |++.+||+|+|+|++||+||+|.+.++|+|
T Consensus 337 ~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIH 416 (543)
T KOG0342|consen 337 FSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIH 416 (543)
T ss_pred echhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHH
Confidence 99999999999999999999999999999977 999999999999999999999999999999
Q ss_pred hhcccccCCCceEEEEEeecccHHHhhh
Q psy4494 145 ESGRAGRDGQIAHCILYYRLPDVFKLSS 172 (234)
Q Consensus 145 r~GR~gR~g~~~~~i~~~~~~d~~~~~~ 172 (234)
|+||+||.|..|.++++..|+++.-+..
T Consensus 417 RvGRTaR~gk~G~alL~l~p~El~Flr~ 444 (543)
T KOG0342|consen 417 RVGRTAREGKEGKALLLLAPWELGFLRY 444 (543)
T ss_pred HhccccccCCCceEEEEeChhHHHHHHH
Confidence 9999999999999999999998765543
No 25
>KOG0340|consensus
Probab=99.89 E-value=8.9e-23 Score=173.17 Aligned_cols=163 Identities=21% Similarity=0.326 Sum_probs=119.7
Q ss_pred HHhhhccCchh-HHHHhhCCCCCcEEEEEee----ccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecc
Q psy4494 11 LNLWRTSFYQV-SIAFGLGIDKPNVRFVIHH----CLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTS 85 (234)
Q Consensus 11 l~l~~at~p~~-~i~~~~~~~~~~i~~~~~~----~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t 85 (234)
.-||++|.-+. .-.+...+.++ +-+.+.. ..+..+.+.|...+...... .+..++.-..+. ..+.++||+||
T Consensus 187 tLlfSATitd~i~ql~~~~i~k~-~a~~~e~~~~vstvetL~q~yI~~~~~vkda-YLv~~Lr~~~~~-~~~simIFvnt 263 (442)
T KOG0340|consen 187 TLLFSATITDTIKQLFGCPITKS-IAFELEVIDGVSTVETLYQGYILVSIDVKDA-YLVHLLRDFENK-ENGSIMIFVNT 263 (442)
T ss_pred eEEEEeehhhHHHHhhcCCcccc-cceEEeccCCCCchhhhhhheeecchhhhHH-HHHHHHhhhhhc-cCceEEEEeeh
Confidence 33556655543 22333444443 2222221 22333445555544333222 222333333322 46789999999
Q ss_pred hHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhc
Q psy4494 86 IKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESG 147 (234)
Q Consensus 86 ~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~G 147 (234)
...|+.++..|+..++++..+||.|++++ |++++||+|||.|++|||||+|.++.+|+||+|
T Consensus 264 tr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvG 343 (442)
T KOG0340|consen 264 TRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVG 343 (442)
T ss_pred hHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhc
Confidence 99999999999999999999999999988 999999999999999999999999999999999
Q ss_pred ccccCCCceEEEEEeecccHHHhhhhHHh
Q psy4494 148 RAGRDGQIAHCILYYRLPDVFKLSSMVFD 176 (234)
Q Consensus 148 R~gR~g~~~~~i~~~~~~d~~~~~~~~~~ 176 (234)
|+.|+|+.|.+|.++++.|...+.++.+.
T Consensus 344 RtARAGR~G~aiSivt~rDv~l~~aiE~~ 372 (442)
T KOG0340|consen 344 RTARAGRKGMAISIVTQRDVELLQAIEEE 372 (442)
T ss_pred chhcccCCcceEEEechhhHHHHHHHHHH
Confidence 99999999999999999999888776543
No 26
>KOG0335|consensus
Probab=99.88 E-value=1.4e-22 Score=179.68 Aligned_cols=157 Identities=15% Similarity=0.187 Sum_probs=118.0
Q ss_pred HHHhhhccCchhH-H-HHhhCCC-CCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhc---C-----CCc
Q psy4494 10 YLNLWRTSFYQVS-I-AFGLGID-KPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRF---R-----NQS 78 (234)
Q Consensus 10 ~l~l~~at~p~~~-i-~~~~~~~-~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~---~-----~~~ 78 (234)
+.-|||||||... - ++..-.+ .-.+++......++.+.+....+.+ .++...|.+++.... . ...
T Consensus 264 qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~----~~kr~~Lldll~~~~~~~~~~~~~~e~ 339 (482)
T KOG0335|consen 264 QTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNE----MEKRSKLLDLLNKDDGPPSDGEPKWEK 339 (482)
T ss_pred eEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecc----hhhHHHHHHHhhcccCCcccCCcccce
Confidence 4568999999862 2 2222222 2233444344455555444444333 345555666654322 1 237
Q ss_pred EEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHh
Q psy4494 79 GIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSME 140 (234)
Q Consensus 79 ~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~ 140 (234)
++|||.|++.+..|+..|...++++..+||..++.+ |++++||+|+|+|++|||||+|.+..
T Consensus 340 tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d 419 (482)
T KOG0335|consen 340 TLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADID 419 (482)
T ss_pred EEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchh
Confidence 999999999999999999999999999999999877 99999999999999999999999999
Q ss_pred HhhhhhcccccCCCceEEEEEeecccHHHh
Q psy4494 141 NFYQESGRAGRDGQIAHCILYYRLPDVFKL 170 (234)
Q Consensus 141 ~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~ 170 (234)
+|+||+||+||+|+.|.++.|++..+-...
T Consensus 420 ~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~ 449 (482)
T KOG0335|consen 420 DYVHRIGRTGRVGNGGRATSFFNEKNQNIA 449 (482)
T ss_pred hHHHhccccccCCCCceeEEEeccccchhH
Confidence 999999999999999999999996544433
No 27
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.88 E-value=3.6e-22 Score=185.56 Aligned_cols=158 Identities=15% Similarity=0.205 Sum_probs=119.3
Q ss_pred HHhhhccCchhHHH-HhhCCCCC-cEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHH
Q psy4494 11 LNLWRTSFYQVSIA-FGLGIDKP-NVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKE 88 (234)
Q Consensus 11 l~l~~at~p~~~i~-~~~~~~~~-~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~ 88 (234)
..+||+|++..... ....+..| .+.+.........+.+++.. ....+++..|..++.. ....++||||+|++.
T Consensus 195 ~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~----~~~~~k~~~L~~ll~~-~~~~k~LVF~nt~~~ 269 (572)
T PRK04537 195 TLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYF----PADEEKQTLLLGLLSR-SEGARTMVFVNTKAF 269 (572)
T ss_pred EEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEe----cCHHHHHHHHHHHHhc-ccCCcEEEEeCCHHH
Confidence 45688998875322 22222333 22222222222333343333 2234567777777753 356789999999999
Q ss_pred HHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccc
Q psy4494 89 CEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAG 150 (234)
Q Consensus 89 ~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~g 150 (234)
++.+++.|...++.+..+||+|++.+ |+++++|||+|+|++|||||+|.++++|+||+||+|
T Consensus 270 ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaG 349 (572)
T PRK04537 270 VERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTA 349 (572)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccc
Confidence 99999999999999999999999876 999999999999999999999999999999999999
Q ss_pred cCCCceEEEEEeecccHHHhhhh
Q psy4494 151 RDGQIAHCILYYRLPDVFKLSSM 173 (234)
Q Consensus 151 R~g~~~~~i~~~~~~d~~~~~~~ 173 (234)
|.|+.|.+++|+.+.+...+..+
T Consensus 350 R~G~~G~ai~~~~~~~~~~l~~i 372 (572)
T PRK04537 350 RLGEEGDAISFACERYAMSLPDI 372 (572)
T ss_pred cCCCCceEEEEecHHHHHHHHHH
Confidence 99999999999988776655544
No 28
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.88 E-value=2.1e-22 Score=185.44 Aligned_cols=161 Identities=17% Similarity=0.247 Sum_probs=116.2
Q ss_pred HHHhhhccCchhHHHHhhCCCCCcEEEEEee--ccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhc-CCCcEEEEecch
Q psy4494 10 YLNLWRTSFYQVSIAFGLGIDKPNVRFVIHH--CLSKSMENFYQVRIKPAAQKDCLDELADLMSRRF-RNQSGIIYTTSI 86 (234)
Q Consensus 10 ~l~l~~at~p~~~i~~~~~~~~~~i~~~~~~--~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~-~~~~~iIf~~t~ 86 (234)
+..+||||+|.........+....+.+.+.. .....+.+.+.... ..++...+.+++.... ...++||||+|+
T Consensus 302 q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~----~~~k~~~l~~~l~~~~~~~~~~iVFv~s~ 377 (518)
T PLN00206 302 QVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVE----TKQKKQKLFDILKSKQHFKPPAVVFVSSR 377 (518)
T ss_pred cEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEecc----chhHHHHHHHHHHhhcccCCCEEEEcCCc
Confidence 4457899998763222222222223333222 12222333333321 2234455666665321 235799999999
Q ss_pred HHHHHHHHHHHH-cCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhc
Q psy4494 87 KECEDLREELRN-RGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESG 147 (234)
Q Consensus 87 ~~~~~l~~~L~~-~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~G 147 (234)
..++.++..|.. .++.+..+||++++++ |++++||||+|+|++|||||+|.++.+|+||+|
T Consensus 378 ~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiG 457 (518)
T PLN00206 378 LGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIG 457 (518)
T ss_pred hhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhcc
Confidence 999999999975 5899999999999876 999999999999999999999999999999999
Q ss_pred ccccCCCceEEEEEeecccHHHhhhhH
Q psy4494 148 RAGRDGQIAHCILYYRLPDVFKLSSMV 174 (234)
Q Consensus 148 R~gR~g~~~~~i~~~~~~d~~~~~~~~ 174 (234)
|+||.|..|.+++|+++.|...+..++
T Consensus 458 RaGR~g~~G~ai~f~~~~~~~~~~~l~ 484 (518)
T PLN00206 458 RASRMGEKGTAIVFVNEEDRNLFPELV 484 (518)
T ss_pred ccccCCCCeEEEEEEchhHHHHHHHHH
Confidence 999999999999999988766555444
No 29
>KOG0336|consensus
Probab=99.88 E-value=1.8e-22 Score=174.18 Aligned_cols=164 Identities=15% Similarity=0.223 Sum_probs=127.9
Q ss_pred HHHhhhccCchhHHHHhhCC-CCCcEEEEEe--eccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecch
Q psy4494 10 YLNLWRTSFYQVSIAFGLGI-DKPNVRFVIH--HCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSI 86 (234)
Q Consensus 10 ~l~l~~at~p~~~i~~~~~~-~~~~i~~~~~--~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~ 86 (234)
+..++|||+|.-........ ..|.+-++-. -...+++.+...| ....+++..+..++.....+.++||||..+
T Consensus 400 qtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v----~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K 475 (629)
T KOG0336|consen 400 QTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIV----TTDSEKLEIVQFFVANMSSNDKVIIFVSRK 475 (629)
T ss_pred eeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEe----cccHHHHHHHHHHHHhcCCCceEEEEEech
Confidence 34568999998643333333 2333322211 1223445555544 234567777777776666788999999999
Q ss_pred HHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcc
Q psy4494 87 KECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGR 148 (234)
Q Consensus 87 ~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR 148 (234)
..++.|..-|.-.|+.+..+||+-++.. |+.++||+|+++|.||+|||+|.+++.|+||+||
T Consensus 476 ~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGr 555 (629)
T KOG0336|consen 476 VMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGR 555 (629)
T ss_pred hhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcc
Confidence 9999999999999999999999988765 9999999999999999999999999999999999
Q ss_pred cccCCCceEEEEEeecccHHHhhhhHHhh
Q psy4494 149 AGRDGQIAHCILYYRLPDVFKLSSMVFDQ 177 (234)
Q Consensus 149 ~gR~g~~~~~i~~~~~~d~~~~~~~~~~~ 177 (234)
+||+|+.|+++.|++.+|......+++--
T Consensus 556 tGRaGr~G~sis~lt~~D~~~a~eLI~IL 584 (629)
T KOG0336|consen 556 TGRAGRTGTSISFLTRNDWSMAEELIQIL 584 (629)
T ss_pred cccCCCCcceEEEEehhhHHHHHHHHHHH
Confidence 99999999999999999998887776543
No 30
>KOG0338|consensus
Probab=99.88 E-value=1.1e-22 Score=179.34 Aligned_cols=163 Identities=22% Similarity=0.335 Sum_probs=129.1
Q ss_pred HHHhhhccCchh-HHHHhhCCCCCcEEEEEee--ccCCCc-ceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecc
Q psy4494 10 YLNLWRTSFYQV-SIAFGLGIDKPNVRFVIHH--CLSKSM-ENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTS 85 (234)
Q Consensus 10 ~l~l~~at~p~~-~i~~~~~~~~~~i~~~~~~--~~~~~~-~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t 85 (234)
|.-|||||+... .-...+++++| |++.+.. .....+ +.|..+++.. ..+.-..+..++.. ....++|||+.|
T Consensus 360 QTmLFSATMteeVkdL~slSL~kP-vrifvd~~~~~a~~LtQEFiRIR~~r--e~dRea~l~~l~~r-tf~~~~ivFv~t 435 (691)
T KOG0338|consen 360 QTMLFSATMTEEVKDLASLSLNKP-VRIFVDPNKDTAPKLTQEFIRIRPKR--EGDREAMLASLITR-TFQDRTIVFVRT 435 (691)
T ss_pred cceeehhhhHHHHHHHHHhhcCCC-eEEEeCCccccchhhhHHHheecccc--ccccHHHHHHHHHH-hcccceEEEEeh
Confidence 567899999885 56778888887 4544432 222222 3455554322 12222233444443 346789999999
Q ss_pred hHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhc
Q psy4494 86 IKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESG 147 (234)
Q Consensus 86 ~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~G 147 (234)
++.|+++.=.|--.|+++.-+||++++++ |++++||+||++|..||||++|.+.+.|+||+|
T Consensus 436 Kk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVG 515 (691)
T KOG0338|consen 436 KKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVG 515 (691)
T ss_pred HHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhh
Confidence 99999999999999999999999999988 999999999999999999999999999999999
Q ss_pred ccccCCCceEEEEEeecccHHHhhhhHHh
Q psy4494 148 RAGRDGQIAHCILYYRLPDVFKLSSMVFD 176 (234)
Q Consensus 148 R~gR~g~~~~~i~~~~~~d~~~~~~~~~~ 176 (234)
|+.|+|+.|.+|+|++..|...++.+++.
T Consensus 516 RTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 516 RTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred hhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 99999999999999999998888877765
No 31
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.87 E-value=1.8e-21 Score=177.78 Aligned_cols=110 Identities=20% Similarity=0.359 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCC
Q psy4494 61 DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGI 122 (234)
Q Consensus 61 ~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gi 122 (234)
++...+.+++... ...++||||++++.++.++..|...++.+..+||++++++ |+++++||
T Consensus 321 ~k~~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GI 399 (475)
T PRK01297 321 DKYKLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGI 399 (475)
T ss_pred hHHHHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCC
Confidence 3555566666532 4568999999999999999999999999999999999876 99999999
Q ss_pred CCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHHHhh
Q psy4494 123 DKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLS 171 (234)
Q Consensus 123 d~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~ 171 (234)
|+++|++|||||+|.+..+|+||+||+||.|+.|.+++|+...|...+.
T Consensus 400 Di~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~ 448 (475)
T PRK01297 400 HIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLP 448 (475)
T ss_pred cccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHH
Confidence 9999999999999999999999999999999999999999877655433
No 32
>KOG0343|consensus
Probab=99.85 E-value=4e-21 Score=170.96 Aligned_cols=163 Identities=17% Similarity=0.224 Sum_probs=133.3
Q ss_pred hHHHHHHHhhhccCchh-HHHHhhCCCCC-cEEEE--EeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEE
Q psy4494 5 LYTIAYLNLWRTSFYQV-SIAFGLGIDKP-NVRFV--IHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGI 80 (234)
Q Consensus 5 ~~~~a~l~l~~at~p~~-~i~~~~~~~~~-~i~~~--~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~i 80 (234)
+...-|.-|||||--.. .-.+.+.+..| .|.+. .....|..++++|.+++. .+++..|+.++..+ ...+.|
T Consensus 243 lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l----~~Ki~~L~sFI~sh-lk~K~i 317 (758)
T KOG0343|consen 243 LPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPL----EDKIDMLWSFIKSH-LKKKSI 317 (758)
T ss_pred CChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEeh----hhHHHHHHHHHHhc-cccceE
Confidence 33445666888886553 44566666444 34332 125678888999988664 57899999999865 567899
Q ss_pred EEecchHHHHHHHHHHHHc--CCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHh
Q psy4494 81 IYTTSIKECEDLREELRNR--GLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSME 140 (234)
Q Consensus 81 If~~t~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~ 140 (234)
||+.|.+++..++..++.. |++...+||.|++.. |++.+||+|+|.|++||++|+|.+++
T Consensus 318 VF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~ 397 (758)
T KOG0343|consen 318 VFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVD 397 (758)
T ss_pred EEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHH
Confidence 9999999999999999876 899999999999976 99999999999999999999999999
Q ss_pred HhhhhhcccccCCCceEEEEEeecccHHHhhh
Q psy4494 141 NFYQESGRAGRDGQIAHCILYYRLPDVFKLSS 172 (234)
Q Consensus 141 ~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~ 172 (234)
+|+||+||+.|.+..|.+++++.|.+...+..
T Consensus 398 tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~ 429 (758)
T KOG0343|consen 398 TYIHRVGRTARYKERGESLLMLTPSEEEAMLK 429 (758)
T ss_pred HHHHHhhhhhcccCCCceEEEEcchhHHHHHH
Confidence 99999999999999999999999988544433
No 33
>KOG0344|consensus
Probab=99.85 E-value=7.7e-21 Score=170.21 Aligned_cols=161 Identities=20% Similarity=0.259 Sum_probs=131.2
Q ss_pred HHHhhhccCchh--HHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchH
Q psy4494 10 YLNLWRTSFYQV--SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIK 87 (234)
Q Consensus 10 ~l~l~~at~p~~--~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~ 87 (234)
..++||+|++.. .++-..-.+...|-+..+......+++-.... ++...++..+.+++... -..+++||+.+.+
T Consensus 323 ~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~---gse~~K~lA~rq~v~~g-~~PP~lIfVQs~e 398 (593)
T KOG0344|consen 323 RVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFC---GSEKGKLLALRQLVASG-FKPPVLIFVQSKE 398 (593)
T ss_pred hhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheee---ecchhHHHHHHHHHhcc-CCCCeEEEEecHH
Confidence 578999999985 45555555555555555555555555433332 33456777888888765 4567999999999
Q ss_pred HHHHHHHHH-HHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcc
Q psy4494 88 ECEDLREEL-RNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGR 148 (234)
Q Consensus 88 ~~~~l~~~L-~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR 148 (234)
.|.+|...| .-.++.+..+||..++.+ |+.++||+|+.+|+.|||||+|.+..+|+||+||
T Consensus 399 Rak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGR 478 (593)
T KOG0344|consen 399 RAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGR 478 (593)
T ss_pred HHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhc
Confidence 999999999 677999999999998876 9999999999999999999999999999999999
Q ss_pred cccCCCceEEEEEeecccHHHhhhhH
Q psy4494 149 AGRDGQIAHCILYYRLPDVFKLSSMV 174 (234)
Q Consensus 149 ~gR~g~~~~~i~~~~~~d~~~~~~~~ 174 (234)
+||+|+.|.|++||+.+|...++.+.
T Consensus 479 tgRag~~g~Aitfytd~d~~~ir~ia 504 (593)
T KOG0344|consen 479 TGRAGRSGKAITFYTDQDMPRIRSIA 504 (593)
T ss_pred cCCCCCCcceEEEeccccchhhhhHH
Confidence 99999999999999999988776654
No 34
>PTZ00424 helicase 45; Provisional
Probab=99.85 E-value=1e-20 Score=168.88 Aligned_cols=160 Identities=21% Similarity=0.314 Sum_probs=116.6
Q ss_pred HHHhhhccCchhHHH--HhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchH
Q psy4494 10 YLNLWRTSFYQVSIA--FGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIK 87 (234)
Q Consensus 10 ~l~l~~at~p~~~i~--~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~ 87 (234)
++-+++||+|+.... .....++..+.+.........++.+|.... ....+...+..++.. ....++||||+|++
T Consensus 203 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~-~~~~~~ivF~~t~~ 278 (401)
T PTZ00424 203 QVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVE---KEEWKFDTLCDLYET-LTITQAIIYCNTRR 278 (401)
T ss_pred EEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecC---hHHHHHHHHHHHHHh-cCCCeEEEEecCcH
Confidence 345578888875322 122222222211111122333444444322 123345555555543 34568999999999
Q ss_pred HHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhccc
Q psy4494 88 ECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRA 149 (234)
Q Consensus 88 ~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~ 149 (234)
.++.++..|...++.+..+||++++++ |+++++|+|+|++++||+||+|.+..+|+||+||+
T Consensus 279 ~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRa 358 (401)
T PTZ00424 279 KVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRS 358 (401)
T ss_pred HHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeeccccc
Confidence 999999999999999999999999876 99999999999999999999999999999999999
Q ss_pred ccCCCceEEEEEeecccHHHhhhh
Q psy4494 150 GRDGQIAHCILYYRLPDVFKLSSM 173 (234)
Q Consensus 150 gR~g~~~~~i~~~~~~d~~~~~~~ 173 (234)
||.|+.|.+++++++.|...+..+
T Consensus 359 gR~g~~G~~i~l~~~~~~~~~~~~ 382 (401)
T PTZ00424 359 GRFGRKGVAINFVTPDDIEQLKEI 382 (401)
T ss_pred ccCCCCceEEEEEcHHHHHHHHHH
Confidence 999999999999998887655543
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.84 E-value=2.2e-20 Score=177.95 Aligned_cols=101 Identities=29% Similarity=0.374 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHc--------CCceeeeccCCCchh------------------
Q psy4494 61 DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR--------GLRVSAYHAKLESNV------------------ 114 (234)
Q Consensus 61 ~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~--------~~~~~~~h~~~~~~~------------------ 114 (234)
++...+.+++. .+.++||||+|++.++.++..|++. +.++..|||++++++
T Consensus 259 ~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVa 335 (742)
T TIGR03817 259 EAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVAT 335 (742)
T ss_pred HHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEE
Confidence 34555666655 3578999999999999999998764 567899999999977
Q ss_pred hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeec
Q psy4494 115 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRL 164 (234)
Q Consensus 115 T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~ 164 (234)
|+++++|||+++|++|||||.|.+..+|+||+||+||.|+.|.++++.+.
T Consensus 336 Td~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 336 TNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred CchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999863
No 36
>KOG0327|consensus
Probab=99.84 E-value=5.6e-21 Score=163.73 Aligned_cols=164 Identities=24% Similarity=0.325 Sum_probs=130.5
Q ss_pred hHHHHHHHhhhccCchhHHHHh--hCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEE
Q psy4494 5 LYTIAYLNLWRTSFYQVSIAFG--LGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIY 82 (234)
Q Consensus 5 ~~~~a~l~l~~at~p~~~i~~~--~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf 82 (234)
+.+-.|..|+|||.|....... .+.++..|.+.......+.+.++|.-+.++. |+..|.++.. .-..++||
T Consensus 197 lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~----k~~~l~dl~~---~~~q~~if 269 (397)
T KOG0327|consen 197 LPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE----KLDTLCDLYR---RVTQAVIF 269 (397)
T ss_pred cCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc----cccHHHHHHH---hhhcceEE
Confidence 3344578899999999744333 3334433333322333455667776655443 6666776665 45678999
Q ss_pred ecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhh
Q psy4494 83 TTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 144 (234)
Q Consensus 83 ~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~q 144 (234)
|||++.+..+...|..+++++.++||+|.+.+ |+.++||+|+..+..||||++|...++|+|
T Consensus 270 ~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yih 349 (397)
T KOG0327|consen 270 CNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIH 349 (397)
T ss_pred ecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhh
Confidence 99999999999999999999999999999977 889999999999999999999999999999
Q ss_pred hhcccccCCCceEEEEEeecccHHHhhhhHH
Q psy4494 145 ESGRAGRDGQIAHCILYYRLPDVFKLSSMVF 175 (234)
Q Consensus 145 r~GR~gR~g~~~~~i~~~~~~d~~~~~~~~~ 175 (234)
|+||+||.|++|.++.+++..|...++++.+
T Consensus 350 R~gr~gr~grkg~~in~v~~~d~~~lk~ie~ 380 (397)
T KOG0327|consen 350 RIGRAGRFGRKGVAINFVTEEDVRDLKDIEK 380 (397)
T ss_pred hcccccccCCCceeeeeehHhhHHHHHhHHH
Confidence 9999999999999999999998887776653
No 37
>KOG0346|consensus
Probab=99.82 E-value=1.6e-19 Score=157.03 Aligned_cols=159 Identities=17% Similarity=0.260 Sum_probs=120.3
Q ss_pred hHHHHHHHhhhccCchh-HHHHhhCCCCCcEEEEEe-eccC--CCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEE
Q psy4494 5 LYTIAYLNLWRTSFYQV-SIAFGLGIDKPNVRFVIH-HCLS--KSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGI 80 (234)
Q Consensus 5 ~~~~a~l~l~~at~p~~-~i~~~~~~~~~~i~~~~~-~~~~--~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~i 80 (234)
+.+..|.-|.|||+.+. ..+..+-...|.+ .... ...+ +.+.+|+.. .. ..+++..++.+++-.+-.++.|
T Consensus 198 LPr~~Q~~LmSATl~dDv~~LKkL~l~nPvi-Lkl~e~el~~~dqL~Qy~v~-cs---e~DKflllyallKL~LI~gKsl 272 (569)
T KOG0346|consen 198 LPRIYQCFLMSATLSDDVQALKKLFLHNPVI-LKLTEGELPNPDQLTQYQVK-CS---EEDKFLLLYALLKLRLIRGKSL 272 (569)
T ss_pred CCchhhheeehhhhhhHHHHHHHHhccCCeE-EEeccccCCCcccceEEEEE-ec---cchhHHHHHHHHHHHHhcCceE
Confidence 45566777788888764 3333344455544 3222 2222 333444443 33 3456666777766555678899
Q ss_pred EEecchHHHHHHHHHHHHcCCceeeeccCCCchh----------------------------------------------
Q psy4494 81 IYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---------------------------------------------- 114 (234)
Q Consensus 81 If~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~---------------------------------------------- 114 (234)
||+||++.|-++--.|+..|++...++|.++...
T Consensus 273 iFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkk 352 (569)
T KOG0346|consen 273 IFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKK 352 (569)
T ss_pred EEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccc
Confidence 9999999999999999999999999999988654
Q ss_pred -------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHH
Q psy4494 115 -------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVF 168 (234)
Q Consensus 115 -------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~ 168 (234)
....+||||+.+|..|+|||+|.+.++|+||+||++|++++|.++.|+.|.+..
T Consensus 353 skkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 353 SKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEF 413 (569)
T ss_pred cccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHh
Confidence 345689999999999999999999999999999999999999999999987655
No 38
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=4.6e-19 Score=164.58 Aligned_cols=110 Identities=24% Similarity=0.220 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHhhc-CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh----------------hhhcccC
Q psy4494 59 QKDCLDELADLMSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLG 121 (234)
Q Consensus 59 ~~~~~~~l~~~l~~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~----------------T~~~~~G 121 (234)
..++...|.+++.... .+.++||||+|++.++.++..|...|+++..+||.+++.+ |+.+|||
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE~~ii~~ag~~g~VlVATdmAgRG 534 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEEAAIVARAGQRGRITVATNMAGRG 534 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHHHHHHHHcCCCCcEEEEccchhcc
Confidence 4567777887776422 3578999999999999999999999999999999987655 9999999
Q ss_pred CCCC---Ccc-----EEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHH
Q psy4494 122 IDKP---NVR-----FVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVF 168 (234)
Q Consensus 122 id~~---~v~-----~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~ 168 (234)
+|++ +|. +||||++|.+...|.||+||+||.|.+|.+++|++.+|..
T Consensus 535 tDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l 589 (656)
T PRK12898 535 TDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDL 589 (656)
T ss_pred cCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHH
Confidence 9999 776 9999999999999999999999999999999999987743
No 39
>KOG0334|consensus
Probab=99.80 E-value=4.6e-19 Score=167.48 Aligned_cols=164 Identities=15% Similarity=0.293 Sum_probs=132.5
Q ss_pred HHHHHHhhhccCchhHHHHh-hCCCCC-cEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEec
Q psy4494 7 TIAYLNLWRTSFYQVSIAFG-LGIDKP-NVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTT 84 (234)
Q Consensus 7 ~~a~l~l~~at~p~~~i~~~-~~~~~~-~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~ 84 (234)
+--|+-+||+|||....... .-..+| .|.+..+....+.+++.+.|... +.+++..|.++|.......++||||.
T Consensus 545 pdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~---e~eKf~kL~eLl~e~~e~~~tiiFv~ 621 (997)
T KOG0334|consen 545 PDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAI---ENEKFLKLLELLGERYEDGKTIIFVD 621 (997)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecC---chHHHHHHHHHHHHHhhcCCEEEEEc
Confidence 34578899999999733222 222344 34444455666677777777542 34577777778776667889999999
Q ss_pred chHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhh
Q psy4494 85 SIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQES 146 (234)
Q Consensus 85 t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~ 146 (234)
+...|..+...|.+.|+.+..+||+.++.+ |+.+++|+|++++.+|||||+|....+|+||+
T Consensus 622 ~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~ 701 (997)
T KOG0334|consen 622 KQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRV 701 (997)
T ss_pred CchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHh
Confidence 999999999999999999999999999966 99999999999999999999999999999999
Q ss_pred cccccCCCceEEEEEeecccHHHhhhh
Q psy4494 147 GRAGRDGQIAHCILYYRLPDVFKLSSM 173 (234)
Q Consensus 147 GR~gR~g~~~~~i~~~~~~d~~~~~~~ 173 (234)
||+||+|++|.|++|+.+.+......+
T Consensus 702 gRTgragrkg~AvtFi~p~q~~~a~dl 728 (997)
T KOG0334|consen 702 GRTGRAGRKGAAVTFITPDQLKYAGDL 728 (997)
T ss_pred cccccCCccceeEEEeChHHhhhHHHH
Confidence 999999999999999999665544333
No 40
>KOG0339|consensus
Probab=99.80 E-value=5.8e-19 Score=155.96 Aligned_cols=163 Identities=17% Similarity=0.194 Sum_probs=127.5
Q ss_pred HHHhhhccCchh--HHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchH
Q psy4494 10 YLNLWRTSFYQV--SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIK 87 (234)
Q Consensus 10 ~l~l~~at~p~~--~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~ 87 (234)
|.-+|++||+.. ..+...-.++.++...-...-..-+.+...|.+ +...|+.+|..-|-.....+++|||+..+.
T Consensus 403 QtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~---s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~ 479 (731)
T KOG0339|consen 403 QTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCP---SEEKKLNWLLRHLVEFSSEGKVLIFVTKKA 479 (731)
T ss_pred eEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeecc---CcHHHHHHHHHHhhhhccCCcEEEEEeccC
Confidence 345699999885 233333345544332222222333334444433 345688888887766556789999999999
Q ss_pred HHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhccc
Q psy4494 88 ECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRA 149 (234)
Q Consensus 88 ~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~ 149 (234)
.+++++..|+..++.+..+||+|++.+ |++..||+|+++++.|||||+-.+++.|.||+||+
T Consensus 480 ~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrt 559 (731)
T KOG0339|consen 480 DAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRT 559 (731)
T ss_pred CHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhc
Confidence 999999999999999999999998876 99999999999999999999999999999999999
Q ss_pred ccCCCceEEEEEeecccHHHhhhhHH
Q psy4494 150 GRDGQIAHCILYYRLPDVFKLSSMVF 175 (234)
Q Consensus 150 gR~g~~~~~i~~~~~~d~~~~~~~~~ 175 (234)
||+|..|++++++++.|....-.++.
T Consensus 560 gRag~kGvayTlvTeKDa~fAG~LVn 585 (731)
T KOG0339|consen 560 GRAGEKGVAYTLVTEKDAEFAGHLVN 585 (731)
T ss_pred ccccccceeeEEechhhHHHhhHHHH
Confidence 99999999999999999876555554
No 41
>KOG4284|consensus
Probab=99.80 E-value=1.1e-19 Score=164.33 Aligned_cols=160 Identities=17% Similarity=0.265 Sum_probs=127.8
Q ss_pred HHHHHHHhhhccCchh--HHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCCh----HHHHHHHHHHHHhhcCCCcE
Q psy4494 6 YTIAYLNLWRTSFYQV--SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQ----KDCLDELADLMSRRFRNQSG 79 (234)
Q Consensus 6 ~~~a~l~l~~at~p~~--~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~----~~~~~~l~~~l~~~~~~~~~ 79 (234)
...-|...||||.|+- .......-++.-|++.....-.-.+.+||.+.+.+... ..++..|-+++. ..+...+
T Consensus 197 P~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~-~ipy~QA 275 (980)
T KOG4284|consen 197 PQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFK-SIPYVQA 275 (980)
T ss_pred chhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHh-hCchHHH
Confidence 3344566789999985 22333333555577665554455677888776665432 235566666665 3466789
Q ss_pred EEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhH
Q psy4494 80 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMEN 141 (234)
Q Consensus 80 iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~ 141 (234)
||||+....|+-++.+|.+.|+++..+.|.|++.+ |+..+||||-++|++|||.|+|.+-++
T Consensus 276 lVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eT 355 (980)
T KOG4284|consen 276 LVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEET 355 (980)
T ss_pred HhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHH
Confidence 99999999999999999999999999999999988 999999999999999999999999999
Q ss_pred hhhhhcccccCCCceEEEEEeeccc
Q psy4494 142 FYQESGRAGRDGQIAHCILYYRLPD 166 (234)
Q Consensus 142 y~qr~GR~gR~g~~~~~i~~~~~~d 166 (234)
|+||+|||||.|..|.+|+|.....
T Consensus 356 Y~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 356 YFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred HHHHhhhcccccccceeEEEeccch
Confidence 9999999999999999999997653
No 42
>KOG0347|consensus
Probab=99.79 E-value=7.9e-20 Score=162.67 Aligned_cols=98 Identities=21% Similarity=0.299 Sum_probs=93.0
Q ss_pred CCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCC
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSK 137 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~ 137 (234)
++++|||||+++.+.+|+..|...+++...+|+.|.+++ |++++||+|||+|+|||||..|.
T Consensus 463 PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPr 542 (731)
T KOG0347|consen 463 PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPR 542 (731)
T ss_pred CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCC
Confidence 788999999999999999999999999999999999987 99999999999999999999999
Q ss_pred CHhHhhhhhcccccCCCceEEEEEeecccHHHhhhh
Q psy4494 138 SMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSM 173 (234)
Q Consensus 138 ~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~ 173 (234)
+.+-|+||.||+.|++..|.++++..|.+...+.++
T Consensus 543 tseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL 578 (731)
T KOG0347|consen 543 TSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKL 578 (731)
T ss_pred ccceeEecccccccccCCCeEEEEeChHHhHHHHHH
Confidence 999999999999999999999999999887655544
No 43
>KOG0350|consensus
Probab=99.78 E-value=7.7e-19 Score=154.89 Aligned_cols=167 Identities=19% Similarity=0.214 Sum_probs=127.3
Q ss_pred hHHHHHHHhhhccCchhHH-HHhhCCCCCcEEEE-----EeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCc
Q psy4494 5 LYTIAYLNLWRTSFYQVSI-AFGLGIDKPNVRFV-----IHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQS 78 (234)
Q Consensus 5 ~~~~a~l~l~~at~p~~~i-~~~~~~~~~~i~~~-----~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~ 78 (234)
+|..-..-+|++++.+.+. ...+.+.-|.+..+ ..+..|..+.+++.+.... .+...+..++... ...+
T Consensus 357 ~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~----~kpl~~~~lI~~~-k~~r 431 (620)
T KOG0350|consen 357 LYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPK----FKPLAVYALITSN-KLNR 431 (620)
T ss_pred cCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccc----cchHhHHHHHHHh-hcce
Confidence 3444455567888877642 33344444433322 3466777777777764322 2334455555532 5678
Q ss_pred EEEEecchHHHHHHHHHHH----HcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecC
Q psy4494 79 GIIYTTSIKECEDLREELR----NRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLS 136 (234)
Q Consensus 79 ~iIf~~t~~~~~~l~~~L~----~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P 136 (234)
+|+|+++.+.+.+++..|. +..+.+..|.|+++.+. +++++||||+.+|+.|||||+|
T Consensus 432 ~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P 511 (620)
T KOG0350|consen 432 TLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPP 511 (620)
T ss_pred EEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCC
Confidence 9999999999999999998 23667788888888765 9999999999999999999999
Q ss_pred CCHhHhhhhhcccccCCCceEEEEEeecccHHHhhhhHHh
Q psy4494 137 KSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVFD 176 (234)
Q Consensus 137 ~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~~~~ 176 (234)
.+..+|+||+||++|+|+.|.|+.+....+...+.+++..
T Consensus 512 ~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~ 551 (620)
T KOG0350|consen 512 ASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKK 551 (620)
T ss_pred chhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHH
Confidence 9999999999999999999999999999998888877654
No 44
>KOG0348|consensus
Probab=99.76 E-value=3.7e-18 Score=151.68 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=102.4
Q ss_pred ccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHc---------------------
Q psy4494 41 CLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR--------------------- 99 (234)
Q Consensus 41 ~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~--------------------- 99 (234)
..|..+.+.|.|++..-..-.+...|.+..+ ....+++|||+.+.+.++-=++.|...
T Consensus 391 ~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k-~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~ 469 (708)
T KOG0348|consen 391 AIPEQLLQRYTVVPPKLRLVALAALLLNKVK-FEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLF 469 (708)
T ss_pred cCcHHhhhceEecCCchhHHHHHHHHHHHhh-hhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhh
Confidence 3456667788887654332223333333333 234568999999999999888777531
Q ss_pred -CCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEE
Q psy4494 100 -GLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCIL 160 (234)
Q Consensus 100 -~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~ 160 (234)
+.+..-+||+|++++ |++++||+|+|+|++||.||+|.+..+|+||+||+.|.|..|.+++
T Consensus 470 ~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL 549 (708)
T KOG0348|consen 470 MDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL 549 (708)
T ss_pred hcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE
Confidence 345788999999988 9999999999999999999999999999999999999999999999
Q ss_pred EeecccHHHh
Q psy4494 161 YYRLPDVFKL 170 (234)
Q Consensus 161 ~~~~~d~~~~ 170 (234)
|..|.+...+
T Consensus 550 fL~P~Eaey~ 559 (708)
T KOG0348|consen 550 FLLPSEAEYV 559 (708)
T ss_pred EecccHHHHH
Confidence 9999887643
No 45
>KOG0337|consensus
Probab=99.75 E-value=9.3e-19 Score=151.66 Aligned_cols=162 Identities=17% Similarity=0.176 Sum_probs=136.0
Q ss_pred HHHHHHhhhccCchhHH-HHhhCCCC-CcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEec
Q psy4494 7 TIAYLNLWRTSFYQVSI-AFGLGIDK-PNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTT 84 (234)
Q Consensus 7 ~~a~l~l~~at~p~~~i-~~~~~~~~-~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~ 84 (234)
.-+|.-+||+|.|+..+ ....|..+ ..||+.+.......++..+..+.+ +++...|..++.+...+++++||+.
T Consensus 194 ~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~----a~K~aaLl~il~~~~~~~~t~vf~~ 269 (529)
T KOG0337|consen 194 ESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRK----AEKEAALLSILGGRIKDKQTIVFVA 269 (529)
T ss_pred CcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeecc----HHHHHHHHHHHhccccccceeEEec
Confidence 33466789999999743 34466644 468988888787777776665433 4567777777776556778999999
Q ss_pred chHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhh
Q psy4494 85 SIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQES 146 (234)
Q Consensus 85 t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~ 146 (234)
|+..+|.+...|+..|+.+..++|++++.. |++++||+|+|..+.|||||+|.+..-|+||+
T Consensus 270 tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRV 349 (529)
T KOG0337|consen 270 TKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRV 349 (529)
T ss_pred ccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEe
Confidence 999999999999999999999999999876 99999999999999999999999999999999
Q ss_pred cccccCCCceEEEEEeecccHHHhhh
Q psy4494 147 GRAGRDGQIAHCILYYRLPDVFKLSS 172 (234)
Q Consensus 147 GR~gR~g~~~~~i~~~~~~d~~~~~~ 172 (234)
||+.|+|+.|.++.++.+.|...+.+
T Consensus 350 gr~aragrtg~aYs~V~~~~~~yl~D 375 (529)
T KOG0337|consen 350 GRVARAGRTGRAYSLVASTDDPYLLD 375 (529)
T ss_pred cchhhccccceEEEEEecccchhhhh
Confidence 99999999999999999987665443
No 46
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=8.4e-18 Score=159.20 Aligned_cols=110 Identities=23% Similarity=0.241 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHhh-cCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh----------------hhhcccC
Q psy4494 59 QKDCLDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLG 121 (234)
Q Consensus 59 ~~~~~~~l~~~l~~~-~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~----------------T~~~~~G 121 (234)
..++...|.+.+... ..+.++||||+|++.++.++..|...|+++..+||.+.+++ |+.+|||
T Consensus 410 ~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g~VlIATdmAgRG 489 (790)
T PRK09200 410 LDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKGAVTVATNMAGRG 489 (790)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCCeEEEEccchhcC
Confidence 356777777777542 35788999999999999999999999999999999987765 9999999
Q ss_pred CCC---CCcc-----EEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHH
Q psy4494 122 IDK---PNVR-----FVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVF 168 (234)
Q Consensus 122 id~---~~v~-----~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~ 168 (234)
+|+ ++|. +||||++|.+...|.||+||+||.|.+|.+++|++..|..
T Consensus 490 ~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l 544 (790)
T PRK09200 490 TDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDL 544 (790)
T ss_pred cCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHHH
Confidence 999 6999 9999999999999999999999999999999999986643
No 47
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.71 E-value=6.2e-17 Score=152.00 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=108.2
Q ss_pred HHHhhhccCchh--HHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcC-CC-----hHHHHHHHHHHHHhh--cCCCcE
Q psy4494 10 YLNLWRTSFYQV--SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKP-AA-----QKDCLDELADLMSRR--FRNQSG 79 (234)
Q Consensus 10 ~l~l~~at~p~~--~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~-~~-----~~~~~~~l~~~l~~~--~~~~~~ 79 (234)
++-++|||+|.. .+...++ +++.+.+ .......++++|...... .. ..++. .+...+... ..++++
T Consensus 323 q~ILmSATl~~dv~~l~~~~~-~p~~I~I--~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~-~~l~~L~~~~~~~~g~i 398 (675)
T PHA02653 323 SLFLMTATLEDDRDRIKEFFP-NPAFVHI--PGGTLFPISEVYVKNKYNPKNKRAYIEEEKK-NIVTALKKYTPPKGSSG 398 (675)
T ss_pred EEEEEccCCcHhHHHHHHHhc-CCcEEEe--CCCcCCCeEEEEeecCcccccchhhhHHHHH-HHHHHHHHhhcccCCcE
Confidence 577899999864 2222222 3443432 222234556666432210 00 11111 222222211 134689
Q ss_pred EEEecchHHHHHHHHHHHHc--CCceeeeccCCCchh-----------------hhhcccCCCCCCccEEEEee---cCC
Q psy4494 80 IIYTTSIKECEDLREELRNR--GLRVSAYHAKLESNV-----------------SIAFGLGIDKPNVRFVIHHC---LSK 137 (234)
Q Consensus 80 iIf~~t~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~-----------------T~~~~~Gid~~~v~~Vi~~~---~P~ 137 (234)
|||++++++++.+++.|.+. ++.+..+||++++.+ |+.+++|+|+|+|++||++| .|.
T Consensus 399 LVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~ 478 (675)
T PHA02653 399 IVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNIDEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE 478 (675)
T ss_pred EEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHHHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCC
Confidence 99999999999999999987 789999999999753 99999999999999999999 665
Q ss_pred ---------CHhHhhhhhcccccCCCceEEEEEeecccH
Q psy4494 138 ---------SMENFYQESGRAGRDGQIAHCILYYRLPDV 167 (234)
Q Consensus 138 ---------~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~ 167 (234)
+..+|.||+|||||. ++|.|+.+++..+.
T Consensus 479 ~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 479 PFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred cccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 778999999999999 78999999998775
No 48
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.69 E-value=5.8e-16 Score=149.98 Aligned_cols=91 Identities=27% Similarity=0.400 Sum_probs=84.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc--CCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEee
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR--GLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHC 134 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~ 134 (234)
.+++++||||+++.++.+++.|+.. ++++..+||+|++++ |+++++|+|+|++++||+++
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~ 738 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIER 738 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEec
Confidence 4678999999999999999999985 788999999999876 99999999999999999999
Q ss_pred cCC-CHhHhhhhhcccccCCCceEEEEEeecc
Q psy4494 135 LSK-SMENFYQESGRAGRDGQIAHCILYYRLP 165 (234)
Q Consensus 135 ~P~-~~~~y~qr~GR~gR~g~~~~~i~~~~~~ 165 (234)
.|. +..+|+||+||+||.|+.|.|++++++.
T Consensus 739 a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 739 ADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred CCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 976 6789999999999999999999999764
No 49
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.67 E-value=3.1e-16 Score=147.58 Aligned_cols=109 Identities=19% Similarity=0.204 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHhh-cCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh----------------hhhcccC
Q psy4494 59 QKDCLDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLG 121 (234)
Q Consensus 59 ~~~~~~~l~~~l~~~-~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~----------------T~~~~~G 121 (234)
..++...+.+.+.+. ..+.++||||+|++.++.++..|...|+++..+||.+++++ |+.+|||
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g~VlIATdmAgRG 485 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKGAVTVATSMAGRG 485 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCCeEEEEccccccc
Confidence 356777777776542 35789999999999999999999999999999999999766 9999999
Q ss_pred CCCC---------CccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHH
Q psy4494 122 IDKP---------NVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVF 168 (234)
Q Consensus 122 id~~---------~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~ 168 (234)
+|++ ++.+|++|++|....+ .||+||+||.|.+|.+++|++..|..
T Consensus 486 tDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~l 540 (762)
T TIGR03714 486 TDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDDL 540 (762)
T ss_pred cCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchhh
Confidence 9999 9999999999988777 99999999999999999999987643
No 50
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.67 E-value=2.9e-16 Score=151.88 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHH-HcCCceeeeccCCCchh--------------------hhhc
Q psy4494 60 KDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELR-NRGLRVSAYHAKLESNV--------------------SIAF 118 (234)
Q Consensus 60 ~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~-~~~~~~~~~h~~~~~~~--------------------T~~~ 118 (234)
+.|+..|.++++. ..+.++||||++++.+..+++.|+ ..|+++..+||+|++.+ |++.
T Consensus 478 d~Ki~~L~~~L~~-~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvg 556 (956)
T PRK04914 478 DPRVEWLIDFLKS-HRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIG 556 (956)
T ss_pred CHHHHHHHHHHHh-cCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhh
Confidence 3466777777764 357899999999999999999995 56999999999999866 8999
Q ss_pred ccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeec
Q psy4494 119 GLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRL 164 (234)
Q Consensus 119 ~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~ 164 (234)
|+|+|++.+++|||||+|+++..|.||+||+||.|+++.+.+++..
T Consensus 557 seGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~ 602 (956)
T PRK04914 557 SEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPY 602 (956)
T ss_pred ccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEcc
Confidence 9999999999999999999999999999999999999877666644
No 51
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.66 E-value=6.4e-16 Score=136.18 Aligned_cols=88 Identities=13% Similarity=0.253 Sum_probs=74.2
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCC--ceeeeccCCCchh----------------------hhhcccCCCCCCccEE
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGL--RVSAYHAKLESNV----------------------SIAFGLGIDKPNVRFV 130 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~--~~~~~h~~~~~~~----------------------T~~~~~Gid~~~v~~V 130 (234)
.++++||||+|++.++.++..|++.+. .+..+||++++.+ |+++++|+|++ ++.|
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~v 299 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVM 299 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEE
Confidence 568899999999999999999998766 4999999997643 99999999996 8899
Q ss_pred EEeecCCCHhHhhhhhcccccCCCc----eEEEEEeecc
Q psy4494 131 IHHCLSKSMENFYQESGRAGRDGQI----AHCILYYRLP 165 (234)
Q Consensus 131 i~~~~P~~~~~y~qr~GR~gR~g~~----~~~i~~~~~~ 165 (234)
|++..| +++|+||+||+||.|+. |..++|....
T Consensus 300 i~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 300 ITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred EEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 998776 78999999999998764 3555555443
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.65 E-value=3.1e-15 Score=147.79 Aligned_cols=91 Identities=20% Similarity=0.255 Sum_probs=80.1
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc--CCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEee
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR--GLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHC 134 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~ 134 (234)
.+++++||||+++.++.+++.|.+. ++.+..+||+|++++ |+++++|+|+|+|++||..+
T Consensus 808 r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ 887 (1147)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 (1147)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEec
Confidence 4678999999999999999999987 788999999999876 99999999999999999544
Q ss_pred cC-CCHhHhhhhhcccccCCCceEEEEEeecc
Q psy4494 135 LS-KSMENFYQESGRAGRDGQIAHCILYYRLP 165 (234)
Q Consensus 135 ~P-~~~~~y~qr~GR~gR~g~~~~~i~~~~~~ 165 (234)
.. -++.+|+||+||+||.|+.|.|+++++..
T Consensus 888 ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred CCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 32 25567999999999999999999998653
No 53
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.64 E-value=8.9e-16 Score=149.09 Aligned_cols=97 Identities=27% Similarity=0.432 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHc------CCceeeeccCCCchh------------------hhhc
Q psy4494 63 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR------GLRVSAYHAKLESNV------------------SIAF 118 (234)
Q Consensus 63 ~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~------~~~~~~~h~~~~~~~------------------T~~~ 118 (234)
...+.+++. ..+++||||||++.|+.++..|+.. +..+..+||++++++ |+++
T Consensus 274 ~~~L~~~i~---~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~L 350 (876)
T PRK13767 274 YETLHELIK---EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSL 350 (876)
T ss_pred HHHHHHHHh---cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChH
Confidence 334444443 3578999999999999999999873 467999999999876 9999
Q ss_pred ccCCCCCCccEEEEeecCCCHhHhhhhhcccccC-CCceEEEEEe
Q psy4494 119 GLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRD-GQIAHCILYY 162 (234)
Q Consensus 119 ~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~-g~~~~~i~~~ 162 (234)
++|||+|+|++||+|+.|.++.+|+||+||+||. |..+.++++.
T Consensus 351 e~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 351 ELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred HhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 9999999999999999999999999999999985 4444444444
No 54
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.64 E-value=1.4e-15 Score=145.78 Aligned_cols=155 Identities=16% Similarity=0.154 Sum_probs=108.9
Q ss_pred HHHhhhccCchhHHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHH-HHHHHHHHHHhhcCCCcEEEEecchHH
Q psy4494 10 YLNLWRTSFYQVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKD-CLDELADLMSRRFRNQSGIIYTTSIKE 88 (234)
Q Consensus 10 ~l~l~~at~p~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~-~~~~l~~~l~~~~~~~~~iIf~~t~~~ 88 (234)
++-++|||++...+...++ +.+.|... .....++++|........... ....+..++.. ..+.+|||++++++
T Consensus 148 qlIlmSATl~~~~l~~~l~-~~~vI~~~---gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~e 221 (819)
T TIGR01970 148 KILAMSATLDGERLSSLLP-DAPVVESE---GRSFPVEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPGQAE 221 (819)
T ss_pred eEEEEeCCCCHHHHHHHcC-CCcEEEec---CcceeeeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECCHHH
Confidence 3456788888664433332 23333321 112235566654322111111 12234444432 35789999999999
Q ss_pred HHHHHHHHHH---cCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCC---------
Q psy4494 89 CEDLREELRN---RGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKS--------- 138 (234)
Q Consensus 89 ~~~l~~~L~~---~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~--------- 138 (234)
++.+++.|++ .++.+..+||++++++ |+++++|||+|+|++||++|+|..
T Consensus 222 I~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~ 301 (819)
T TIGR01970 222 IRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGI 301 (819)
T ss_pred HHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCC
Confidence 9999999987 4788999999999866 999999999999999999999863
Q ss_pred ---------HhHhhhhhcccccCCCceEEEEEeecccHHHhh
Q psy4494 139 ---------MENFYQESGRAGRDGQIAHCILYYRLPDVFKLS 171 (234)
Q Consensus 139 ---------~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~ 171 (234)
-.+|.||+||+||. .+|.|+.+|+..++..+.
T Consensus 302 ~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~l~ 342 (819)
T TIGR01970 302 TRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQRLP 342 (819)
T ss_pred ceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHhhh
Confidence 23589999999999 899999999987765443
No 55
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.64 E-value=3.1e-15 Score=112.38 Aligned_cols=101 Identities=34% Similarity=0.491 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhhc-CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccC
Q psy4494 61 DCLDELADLMSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 121 (234)
Q Consensus 61 ~~~~~l~~~l~~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~G 121 (234)
.+...+.+++.+.. ..+++||||++.+.++.+++.|...+..+..+||++++.+ |.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 46666777766432 4678999999999999999999988889999999998765 8899999
Q ss_pred CCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEE
Q psy4494 122 IDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILY 161 (234)
Q Consensus 122 id~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~ 161 (234)
+|+|++++||.++.|++...|.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999988876653
No 56
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.64 E-value=1.8e-15 Score=151.05 Aligned_cols=90 Identities=27% Similarity=0.380 Sum_probs=77.4
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcC---------------------------------CceeeeccCCCchh-------
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRG---------------------------------LRVSAYHAKLESNV------- 114 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~---------------------------------~~~~~~h~~~~~~~------- 114 (234)
...++||||||++.||.++..|++.. ..+..+||++++++
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 46789999999999999999997531 12578999999987
Q ss_pred -----------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccC-CCceEEEEEeec
Q psy4494 115 -----------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRD-GQIAHCILYYRL 164 (234)
Q Consensus 115 -----------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~-g~~~~~i~~~~~ 164 (234)
|+++++|||+++|++||||+.|.++.+|+||+||+||. |..+.++++...
T Consensus 323 fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~ 384 (1490)
T PRK09751 323 LKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRT 384 (1490)
T ss_pred HHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCc
Confidence 99999999999999999999999999999999999995 555666755544
No 57
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=1.3e-15 Score=143.88 Aligned_cols=109 Identities=23% Similarity=0.259 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHh-hcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh----------------hhhcccC
Q psy4494 59 QKDCLDELADLMSR-RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLG 121 (234)
Q Consensus 59 ~~~~~~~l~~~l~~-~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~----------------T~~~~~G 121 (234)
..++...+.+.+.. ...+.|+||||+|+..++.++..|.+.|++...+||.+.+.+ |+.+|||
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~VtIATnmAGRG 501 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGAVTIATNMAGRG 501 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCceEEEEeccccCC
Confidence 35677777777753 235789999999999999999999999999999999988766 9999999
Q ss_pred CCCC---Ccc-----EEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccH
Q psy4494 122 IDKP---NVR-----FVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDV 167 (234)
Q Consensus 122 id~~---~v~-----~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~ 167 (234)
+||+ +|. +||+++.|.+...|.|++||+||.|.+|.+.+|++.+|-
T Consensus 502 tDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 502 TDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred CCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 9994 899 999999999999999999999999999999999998763
No 58
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.63 E-value=5.7e-15 Score=138.91 Aligned_cols=98 Identities=24% Similarity=0.321 Sum_probs=87.4
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEee--
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHC-- 134 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~-- 134 (234)
.+.++||||+|++.++.+++.|.+.|+++..+||++++.+ |+.+++|+|+|++++||++|
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dad 520 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 520 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcc
Confidence 4678999999999999999999999999999999988643 88999999999999999998
Q ss_pred ---cCCCHhHhhhhhcccccCCCceEEEEEeecccHHHhhhh
Q psy4494 135 ---LSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSM 173 (234)
Q Consensus 135 ---~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~ 173 (234)
.|.+..+|+||+||+||. ..|.+++|++..+......+
T Consensus 521 ifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 521 KEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred cccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHH
Confidence 799999999999999998 57999999987765544433
No 59
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.62 E-value=2.2e-15 Score=144.66 Aligned_cols=153 Identities=17% Similarity=0.209 Sum_probs=108.2
Q ss_pred HHHhhhccCchhHHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHH-HHHHHHHHHhhcCCCcEEEEecchHH
Q psy4494 10 YLNLWRTSFYQVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDC-LDELADLMSRRFRNQSGIIYTTSIKE 88 (234)
Q Consensus 10 ~l~l~~at~p~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~-~~~l~~~l~~~~~~~~~iIf~~t~~~ 88 (234)
++-++|||++...+...++ +.+.+... .....++.+|..........+. ...+..++.. ..+.+|||++++++
T Consensus 151 qlilmSATl~~~~l~~~~~-~~~~I~~~---gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~e 224 (812)
T PRK11664 151 KLLIMSATLDNDRLQQLLP-DAPVIVSE---GRSFPVERRYQPLPAHQRFDEAVARATAELLRQ--ESGSLLLFLPGVGE 224 (812)
T ss_pred eEEEEecCCCHHHHHHhcC-CCCEEEec---CccccceEEeccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEcCCHHH
Confidence 4567899988754433322 33333221 1122356666532221111111 1234444432 35789999999999
Q ss_pred HHHHHHHHHH---cCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCH--------
Q psy4494 89 CEDLREELRN---RGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSM-------- 139 (234)
Q Consensus 89 ~~~l~~~L~~---~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~-------- 139 (234)
++.+++.|+. .++.+..+||++++++ |+.+++|||+++|++||++|.|...
T Consensus 225 i~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~ 304 (812)
T PRK11664 225 IQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGL 304 (812)
T ss_pred HHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCc
Confidence 9999999987 5788999999999865 9999999999999999998887643
Q ss_pred ----------hHhhhhhcccccCCCceEEEEEeecccHHH
Q psy4494 140 ----------ENFYQESGRAGRDGQIAHCILYYRLPDVFK 169 (234)
Q Consensus 140 ----------~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~ 169 (234)
.+|.||+||+||. .+|.|+.+|+..+...
T Consensus 305 ~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~ 343 (812)
T PRK11664 305 TRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAER 343 (812)
T ss_pred ceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhh
Confidence 4899999999999 6999999999877654
No 60
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.62 E-value=3.5e-15 Score=139.94 Aligned_cols=110 Identities=25% Similarity=0.294 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHh-hcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh----------------hhhcccC
Q psy4494 59 QKDCLDELADLMSR-RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLG 121 (234)
Q Consensus 59 ~~~~~~~l~~~l~~-~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~----------------T~~~~~G 121 (234)
..++...+.+.+.+ ...+.|+||||+|++.++.++..|.+.|++...+||.....+ |+.+|||
T Consensus 387 ~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~q~~rEa~ii~~ag~~g~VtIATnmAgRG 466 (745)
T TIGR00963 387 EEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAGRG 466 (745)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCChHHHHHHHHHhcCCCceEEEEeccccCC
Confidence 34566666665532 336889999999999999999999999999999999844433 9999999
Q ss_pred CCCCC--c-----cEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHH
Q psy4494 122 IDKPN--V-----RFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVF 168 (234)
Q Consensus 122 id~~~--v-----~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~ 168 (234)
+|++. | -+||+++.|.+...|.|++||+||.|.+|.+.+|++..|..
T Consensus 467 tDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l 520 (745)
T TIGR00963 467 TDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNL 520 (745)
T ss_pred cCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHH
Confidence 99998 4 49999999999999999999999999999999999987643
No 61
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.61 E-value=4.4e-15 Score=146.18 Aligned_cols=156 Identities=19% Similarity=0.271 Sum_probs=109.2
Q ss_pred HHHhhhccCchhHHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCC--hHHHHHHHHHHHHh--hcCCCcEEEEecc
Q psy4494 10 YLNLWRTSFYQVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAA--QKDCLDELADLMSR--RFRNQSGIIYTTS 85 (234)
Q Consensus 10 ~l~l~~at~p~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~--~~~~~~~l~~~l~~--~~~~~~~iIf~~t 85 (234)
++-++|||++...+....+ +.|.+.+ ... ...++.+|.......+ ..+.+..+...+.. ...++.+|||+++
T Consensus 220 KvILmSATid~e~fs~~F~-~apvI~V--~Gr-~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg 295 (1294)
T PRK11131 220 KVIITSATIDPERFSRHFN-NAPIIEV--SGR-TYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSG 295 (1294)
T ss_pred eEEEeeCCCCHHHHHHHcC-CCCEEEE--cCc-cccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCC
Confidence 4567888887544333332 2333332 211 2235666654322111 23344444443321 1245789999999
Q ss_pred hHHHHHHHHHHHHcCCc---eeeeccCCCchh----------------hhhcccCCCCCCccEEEEee------------
Q psy4494 86 IKECEDLREELRNRGLR---VSAYHAKLESNV----------------SIAFGLGIDKPNVRFVIHHC------------ 134 (234)
Q Consensus 86 ~~~~~~l~~~L~~~~~~---~~~~h~~~~~~~----------------T~~~~~Gid~~~v~~Vi~~~------------ 134 (234)
+++++.+++.|+..+++ +.++||++++++ |+++++|||+|+|++||++|
T Consensus 296 ~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~ 375 (1294)
T PRK11131 296 EREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTK 375 (1294)
T ss_pred HHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcccCCeeEEEeccHHhhccccCcceEEEECCCccccccccccC
Confidence 99999999999988765 678999999866 99999999999999999996
Q ss_pred ---cC---CCHhHhhhhhcccccCCCceEEEEEeecccHHHh
Q psy4494 135 ---LS---KSMENFYQESGRAGRDGQIAHCILYYRLPDVFKL 170 (234)
Q Consensus 135 ---~P---~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~ 170 (234)
+| .|..+|.||+||+||. .+|.|+.+|+..++...
T Consensus 376 ~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~~ 416 (1294)
T PRK11131 376 VQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLSR 416 (1294)
T ss_pred cccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHhh
Confidence 34 3557999999999999 78999999998877643
No 62
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.60 E-value=2e-14 Score=135.69 Aligned_cols=92 Identities=24% Similarity=0.318 Sum_probs=83.2
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeec-
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCL- 135 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~- 135 (234)
.+.++||||+|++.++.++..|...|+++..+||++++.+ |+.+++|+|+|++++||++|.
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~e 524 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDAD 524 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCc
Confidence 4678999999999999999999999999999999988632 889999999999999999875
Q ss_pred ----CCCHhHhhhhhcccccCCCceEEEEEeecccH
Q psy4494 136 ----SKSMENFYQESGRAGRDGQIAHCILYYRLPDV 167 (234)
Q Consensus 136 ----P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~ 167 (234)
|.+..+|+||+||+||. ..|.+++|++..+.
T Consensus 525 ifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~ 559 (652)
T PRK05298 525 KEGFLRSERSLIQTIGRAARN-VNGKVILYADKITD 559 (652)
T ss_pred ccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCH
Confidence 78999999999999996 68999999986443
No 63
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.58 E-value=5.6e-14 Score=133.44 Aligned_cols=99 Identities=20% Similarity=0.467 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecc--------hHHHHHHHHHHHHc--CCceeeeccCCCchh-----------------
Q psy4494 62 CLDELADLMSRRFRNQSGIIYTTS--------IKECEDLREELRNR--GLRVSAYHAKLESNV----------------- 114 (234)
Q Consensus 62 ~~~~l~~~l~~~~~~~~~iIf~~t--------~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~----------------- 114 (234)
.+..+.+.+. .+.+++|||++ ...++.+++.|.+. ++++..+||+|++++
T Consensus 460 ~~~~i~~~~~---~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILV 536 (681)
T PRK10917 460 VYERIREEIA---KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILV 536 (681)
T ss_pred HHHHHHHHHH---cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 3344444442 56789999985 44667788888876 578999999999877
Q ss_pred -hhhcccCCCCCCccEEEEeecCC-CHhHhhhhhcccccCCCceEEEEEee
Q psy4494 115 -SIAFGLGIDKPNVRFVIHHCLSK-SMENFYQESGRAGRDGQIAHCILYYR 163 (234)
Q Consensus 115 -T~~~~~Gid~~~v~~Vi~~~~P~-~~~~y~qr~GR~gR~g~~~~~i~~~~ 163 (234)
|+++++|+|+|++++||+++.|. ....|.|++||+||.|.+|.|+++++
T Consensus 537 aT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 537 ATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred ECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 99999999999999999999997 57788899999999999999999995
No 64
>KOG0329|consensus
Probab=99.58 E-value=3.6e-16 Score=128.21 Aligned_cols=144 Identities=15% Similarity=0.245 Sum_probs=93.2
Q ss_pred chHHHHHHHhhhccCchh--HHHHhhCCCCCcEEEEEe-eccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEE
Q psy4494 4 LLYTIAYLNLWRTSFYQV--SIAFGLGIDKPNVRFVIH-HCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGI 80 (234)
Q Consensus 4 ~~~~~a~l~l~~at~p~~--~i~~~~~~~~~~i~~~~~-~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~i 80 (234)
.+.+-.|..+|++|+++. ++.....-||-.|-+.-. .-....+++||.- -+...+..++..|.+.+ .-..++
T Consensus 213 ~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~Yvk-Lke~eKNrkl~dLLd~L----eFNQVv 287 (387)
T KOG0329|consen 213 MTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVK-LKENEKNRKLNDLLDVL----EFNQVV 287 (387)
T ss_pred cCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHh-hhhhhhhhhhhhhhhhh----hhccee
Confidence 334445556677777664 444444445544332211 1222344555543 22222333444454444 345699
Q ss_pred EEecchHHHHHHHHHHHHcCCceeeeccCCCchhhhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEE
Q psy4494 81 IYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCIL 160 (234)
Q Consensus 81 If~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~ 160 (234)
||+.|..... ++ .. --.|+.+|||+|+..|+.|+|||+|.+.++|+||+|||||.|.+|.+|.
T Consensus 288 IFvKsv~Rl~-----f~----------kr--~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglait 350 (387)
T KOG0329|consen 288 IFVKSVQRLS-----FQ----------KR--LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 350 (387)
T ss_pred Eeeehhhhhh-----hh----------hh--hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceee
Confidence 9998877622 11 11 0129999999999999999999999999999999999999999999999
Q ss_pred EeecccHHH
Q psy4494 161 YYRLPDVFK 169 (234)
Q Consensus 161 ~~~~~d~~~ 169 (234)
|++..+...
T Consensus 351 fvs~e~da~ 359 (387)
T KOG0329|consen 351 FVSDENDAK 359 (387)
T ss_pred hhcchhhHH
Confidence 998765443
No 65
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.56 E-value=8.5e-14 Score=131.23 Aligned_cols=89 Identities=24% Similarity=0.470 Sum_probs=78.6
Q ss_pred CCCcEEEEecch--------HHHHHHHHHHHHc--CCceeeeccCCCchh------------------hhhcccCCCCCC
Q psy4494 75 RNQSGIIYTTSI--------KECEDLREELRNR--GLRVSAYHAKLESNV------------------SIAFGLGIDKPN 126 (234)
Q Consensus 75 ~~~~~iIf~~t~--------~~~~~l~~~L~~~--~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~ 126 (234)
.+.+++|||++. ..++.+++.|.+. ++.+..+||+|++++ |+++++|+|+|+
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~ 526 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPN 526 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCC
Confidence 467899999875 5677888888764 778999999999876 999999999999
Q ss_pred ccEEEEeecCC-CHhHhhhhhcccccCCCceEEEEEee
Q psy4494 127 VRFVIHHCLSK-SMENFYQESGRAGRDGQIAHCILYYR 163 (234)
Q Consensus 127 v~~Vi~~~~P~-~~~~y~qr~GR~gR~g~~~~~i~~~~ 163 (234)
+++||+++.|. +...|.|++||+||.|++|.|++++.
T Consensus 527 v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 527 ATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 99999999997 67788899999999999999999983
No 66
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.55 E-value=3.1e-14 Score=135.43 Aligned_cols=85 Identities=16% Similarity=0.255 Sum_probs=71.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh----------------------------------hhhccc
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------------------------SIAFGL 120 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~----------------------------------T~~~~~ 120 (234)
.++++||||||++.++.+++.|++.++ ..+||+|++.+ |+++++
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaer 348 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEV 348 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhh
Confidence 467899999999999999999998886 88999876521 788899
Q ss_pred CCCCCCccEEEEeecCCCHhHhhhhhcccccCCCc-eEEEEEeec
Q psy4494 121 GIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQI-AHCILYYRL 164 (234)
Q Consensus 121 Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~-~~~i~~~~~ 164 (234)
|+|++. ++||++..| .++|+||+||+||.|+. +.++.++..
T Consensus 349 GLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 349 GVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred cccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 999996 899998776 68999999999999885 444555543
No 67
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=2e-14 Score=137.24 Aligned_cols=110 Identities=24% Similarity=0.307 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHHHhh-cCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh----------------hhhcccC
Q psy4494 59 QKDCLDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLG 121 (234)
Q Consensus 59 ~~~~~~~l~~~l~~~-~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~----------------T~~~~~G 121 (234)
..++...|.+.+... ..+.|+||||+|++.++.++..|...|++...+|+.....+ |+.+|||
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLnakq~~REa~Iia~AG~~g~VtIATNMAGRG 659 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNAKQHDREAEIVAEAGQKGAVTIATNMAGRG 659 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecCCHHHhHHHHHHhcCCCCeEEEeccCcCCC
Confidence 456777888777532 35789999999999999999999999999999998654443 9999999
Q ss_pred CCCC---Ccc-----EEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHH
Q psy4494 122 IDKP---NVR-----FVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVF 168 (234)
Q Consensus 122 id~~---~v~-----~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~ 168 (234)
+||+ +|. +||++..|.+...|.|++||+||.|.+|.+++|++..|..
T Consensus 660 tDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 660 TDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 9999 564 4599999999999999999999999999999999987654
No 68
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.51 E-value=2.2e-13 Score=121.07 Aligned_cols=107 Identities=18% Similarity=0.267 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhhc---CCCcEEEEecchHHHHHHHHHHHHcCCcee-eecc--------CCCchh---------------
Q psy4494 62 CLDELADLMSRRF---RNQSGIIYTTSIKECEDLREELRNRGLRVS-AYHA--------KLESNV--------------- 114 (234)
Q Consensus 62 ~~~~l~~~l~~~~---~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~-~~h~--------~~~~~~--------------- 114 (234)
|++.+.+++++.+ .+.++|||++.++.++.+++.|...+..+. .|-| ||++.+
T Consensus 349 Kl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nV 428 (542)
T COG1111 349 KLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNV 428 (542)
T ss_pred cHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceE
Confidence 4555555555443 467999999999999999999999988774 3433 577765
Q ss_pred ---hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHHH
Q psy4494 115 ---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFK 169 (234)
Q Consensus 115 ---T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~ 169 (234)
|++...|+|+|+++.||.|++-.|.-.++||.||+||. ++|..++++..++...
T Consensus 429 LVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtrde 485 (542)
T COG1111 429 LVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTRDE 485 (542)
T ss_pred EEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCchHH
Confidence 99999999999999999999999999999999999998 7888999998874443
No 69
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.51 E-value=1.5e-13 Score=135.75 Aligned_cols=155 Identities=18% Similarity=0.229 Sum_probs=107.0
Q ss_pred HHhhhccCchhHHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCC--hHHHHHHHHHHHHh--hcCCCcEEEEecch
Q psy4494 11 LNLWRTSFYQVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAA--QKDCLDELADLMSR--RFRNQSGIIYTTSI 86 (234)
Q Consensus 11 l~l~~at~p~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~--~~~~~~~l~~~l~~--~~~~~~~iIf~~t~ 86 (234)
+-++|||+....+....+. .|.|.+. . ....+..+|........ ..++...+.+.+.. ...++.+|||++++
T Consensus 214 lIlmSATld~~~fa~~F~~-apvI~V~--G-r~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~ 289 (1283)
T TIGR01967 214 IIITSATIDPERFSRHFNN-APIIEVS--G-RTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGE 289 (1283)
T ss_pred EEEEeCCcCHHHHHHHhcC-CCEEEEC--C-CcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCH
Confidence 4568888875544444432 3333321 1 12234555543221111 12233333333321 11457899999999
Q ss_pred HHHHHHHHHHHHcC---CceeeeccCCCchh----------------hhhcccCCCCCCccEEEEeecCC----------
Q psy4494 87 KECEDLREELRNRG---LRVSAYHAKLESNV----------------SIAFGLGIDKPNVRFVIHHCLSK---------- 137 (234)
Q Consensus 87 ~~~~~l~~~L~~~~---~~~~~~h~~~~~~~----------------T~~~~~Gid~~~v~~Vi~~~~P~---------- 137 (234)
++++.+++.|++.+ +.+.++||++++++ |+++++|||+|+|++||++|++.
T Consensus 290 ~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~ 369 (1283)
T TIGR01967 290 REIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHSGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKV 369 (1283)
T ss_pred HHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCCCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCc
Confidence 99999999999764 45889999999866 99999999999999999999543
Q ss_pred --------CHhHhhhhhcccccCCCceEEEEEeecccHHHh
Q psy4494 138 --------SMENFYQESGRAGRDGQIAHCILYYRLPDVFKL 170 (234)
Q Consensus 138 --------~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~ 170 (234)
|..+|.||.||+||.| +|.|+.+|+..++...
T Consensus 370 ~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~~ 409 (1283)
T TIGR01967 370 QRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNSR 409 (1283)
T ss_pred cccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHhh
Confidence 5579999999999998 9999999998877543
No 70
>PRK13766 Hef nuclease; Provisional
Probab=99.51 E-value=3e-13 Score=130.48 Aligned_cols=106 Identities=18% Similarity=0.282 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhh---cCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccC--------CCchh---------------
Q psy4494 61 DCLDELADLMSRR---FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK--------LESNV--------------- 114 (234)
Q Consensus 61 ~~~~~l~~~l~~~---~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~--------~~~~~--------------- 114 (234)
.|+..|.+++.+. ..+.++||||++++.++.+++.|...|+.+..+||. +++.+
T Consensus 347 pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~v 426 (773)
T PRK13766 347 PKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNV 426 (773)
T ss_pred hHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCE
Confidence 3566666666542 357899999999999999999999999999999986 66543
Q ss_pred ---hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccH
Q psy4494 115 ---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDV 167 (234)
Q Consensus 115 ---T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~ 167 (234)
|+++++|+|+|++++||+||+|++...|+||+||+||.|. |.+++++.....
T Consensus 427 LvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t~ 481 (773)
T PRK13766 427 LVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGTR 481 (773)
T ss_pred EEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCCh
Confidence 9999999999999999999999999999999999999876 666777765443
No 71
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.49 E-value=4.4e-13 Score=118.38 Aligned_cols=73 Identities=21% Similarity=0.363 Sum_probs=65.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcC--CceeeeccCCCchh------------hhhcccCCCCCCccEEEEeecCCCHh
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRG--LRVSAYHAKLESNV------------SIAFGLGIDKPNVRFVIHHCLSKSME 140 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~--~~~~~~h~~~~~~~------------T~~~~~Gid~~~v~~Vi~~~~P~~~~ 140 (234)
+++++||||||++.++.++..|++.+ +.+..+||.+++.+ |++++||+|++.+ .|| ++ |.+.+
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~ 347 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAMQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAA 347 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHH
Confidence 46789999999999999999999864 57888999998866 9999999999987 666 55 99999
Q ss_pred Hhhhhhcccc
Q psy4494 141 NFYQESGRAG 150 (234)
Q Consensus 141 ~y~qr~GR~g 150 (234)
+|+||+||+|
T Consensus 348 ~yiqR~GR~g 357 (357)
T TIGR03158 348 AFWQRLGRLG 357 (357)
T ss_pred HHhhhcccCC
Confidence 9999999997
No 72
>PRK02362 ski2-like helicase; Provisional
Probab=99.48 E-value=1.3e-13 Score=132.17 Aligned_cols=101 Identities=19% Similarity=0.274 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcC------------------------------------Cceee
Q psy4494 62 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRG------------------------------------LRVSA 105 (234)
Q Consensus 62 ~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~------------------------------------~~~~~ 105 (234)
.+..+.+.+. .++++||||+|++.|+.++..|.... ..+.+
T Consensus 232 ~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~ 308 (737)
T PRK02362 232 TLNLVLDTLE---EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAF 308 (737)
T ss_pred HHHHHHHHHH---cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEe
Confidence 4444444443 46789999999999999998886431 24788
Q ss_pred eccCCCchh------------------hhhcccCCCCCCccEEEE----ee-----cCCCHhHhhhhhcccccCCCc--e
Q psy4494 106 YHAKLESNV------------------SIAFGLGIDKPNVRFVIH----HC-----LSKSMENFYQESGRAGRDGQI--A 156 (234)
Q Consensus 106 ~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~----~~-----~P~~~~~y~qr~GR~gR~g~~--~ 156 (234)
+||++++++ |+++++|+|+|.+++||+ || .|.+..+|+||+|||||.|.. |
T Consensus 309 hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G 388 (737)
T PRK02362 309 HHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYG 388 (737)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCc
Confidence 999999987 999999999999999997 76 688999999999999998865 9
Q ss_pred EEEEEeecc
Q psy4494 157 HCILYYRLP 165 (234)
Q Consensus 157 ~~i~~~~~~ 165 (234)
.++++....
T Consensus 389 ~~ii~~~~~ 397 (737)
T PRK02362 389 EAVLLAKSY 397 (737)
T ss_pred eEEEEecCc
Confidence 999998764
No 73
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.48 E-value=5.1e-14 Score=97.11 Aligned_cols=60 Identities=33% Similarity=0.496 Sum_probs=56.3
Q ss_pred HHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCC
Q psy4494 94 EELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDG 153 (234)
Q Consensus 94 ~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g 153 (234)
+.|+..++.+..+||++++++ |+++++|+|+|++++||++++|++...|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999998877 999999999999999999999999999999999999987
No 74
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.47 E-value=2.3e-13 Score=129.01 Aligned_cols=102 Identities=25% Similarity=0.425 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcC-CceeeeccCCCchh------------------hhhccc
Q psy4494 60 KDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRG-LRVSAYHAKLESNV------------------SIAFGL 120 (234)
Q Consensus 60 ~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~-~~~~~~h~~~~~~~------------------T~~~~~ 120 (234)
......+.++++ ....+|||+||+..+|.++..|++.+ ..+...||+++.+. |+.+..
T Consensus 240 ~~~~~~i~~~v~---~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLEL 316 (814)
T COG1201 240 AALYERIAELVK---KHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLEL 316 (814)
T ss_pred HHHHHHHHHHHh---hcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhh
Confidence 345666777776 34589999999999999999999886 78999999999877 999999
Q ss_pred CCCCCCccEEEEeecCCCHhHhhhhhccccc-CCCceEEEEEeec
Q psy4494 121 GIDKPNVRFVIHHCLSKSMENFYQESGRAGR-DGQIAHCILYYRL 164 (234)
Q Consensus 121 Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR-~g~~~~~i~~~~~ 164 (234)
|||+.+|+.||+|+.|.++...+||+||+|. -|..+.++++...
T Consensus 317 GIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 317 GIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred ccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 9999999999999999999999999999996 6777888887765
No 75
>PRK14701 reverse gyrase; Provisional
Probab=99.45 E-value=1.5e-13 Score=139.32 Aligned_cols=110 Identities=18% Similarity=0.276 Sum_probs=88.6
Q ss_pred HHHHHHHHhhcCCCcEEEEecchHH---HHHHHHHHHHcCCceeeeccCCCchh-------------h----hhcccCCC
Q psy4494 64 DELADLMSRRFRNQSGIIYTTSIKE---CEDLREELRNRGLRVSAYHAKLESNV-------------S----IAFGLGID 123 (234)
Q Consensus 64 ~~l~~~l~~~~~~~~~iIf~~t~~~---~~~l~~~L~~~~~~~~~~h~~~~~~~-------------T----~~~~~Gid 123 (234)
..+.+++.. . +..+||||+|++. |+++++.|...|+++..+||+..... | +.++||||
T Consensus 320 ~~L~~ll~~-~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~R~~~l~~F~~G~~~VLVaT~s~~gvaaRGID 397 (1638)
T PRK14701 320 EHVRELLKK-L-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAKNKKGFDLFEEGEIDYLIGVATYYGTLVRGLD 397 (1638)
T ss_pred HHHHHHHHh-C-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecchHHHHHHHHHcCCCCEEEEecCCCCeeEecCc
Confidence 456666653 2 5679999999886 48999999999999999999743322 6 46789999
Q ss_pred CCC-ccEEEEeecCC---CHhHhhhhh-------------cccccCCCceEEEEEeecccHHHhhhhHH
Q psy4494 124 KPN-VRFVIHHCLSK---SMENFYQES-------------GRAGRDGQIAHCILYYRLPDVFKLSSMVF 175 (234)
Q Consensus 124 ~~~-v~~Vi~~~~P~---~~~~y~qr~-------------GR~gR~g~~~~~i~~~~~~d~~~~~~~~~ 175 (234)
+|+ |++|||||+|. +++.|.|.. ||+||+|.++.+++.+..++...+..++.
T Consensus 398 iP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~ 466 (1638)
T PRK14701 398 LPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSILK 466 (1638)
T ss_pred cCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHHhc
Confidence 999 99999999999 999888887 99999999988876666666665555543
No 76
>KOG0349|consensus
Probab=99.43 E-value=2.2e-13 Score=119.08 Aligned_cols=93 Identities=18% Similarity=0.374 Sum_probs=85.1
Q ss_pred cCCCcEEEEecchHHHHHHHHHHHHcC---CceeeeccCCCchh------------------hhhcccCCCCCCccEEEE
Q psy4494 74 FRNQSGIIYTTSIKECEDLREELRNRG---LRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIH 132 (234)
Q Consensus 74 ~~~~~~iIf~~t~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~ 132 (234)
....++||||.|+..|+.|-.++.++| +.+..+||+..+.+ |++++||+|+.++.++||
T Consensus 503 h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~in 582 (725)
T KOG0349|consen 503 HAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMIN 582 (725)
T ss_pred hccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEE
Confidence 356789999999999999999999874 57999999997665 999999999999999999
Q ss_pred eecCCCHhHhhhhhcccccCCCceEEEEEeeccc
Q psy4494 133 HCLSKSMENFYQESGRAGRDGQIAHCILYYRLPD 166 (234)
Q Consensus 133 ~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d 166 (234)
..+|.+-.+|+||+||.||+.+-|.+|.++....
T Consensus 583 vtlpd~k~nyvhrigrvgraermglaislvat~~ 616 (725)
T KOG0349|consen 583 VTLPDDKTNYVHRIGRVGRAERMGLAISLVATVP 616 (725)
T ss_pred EecCcccchhhhhhhccchhhhcceeEEEeeccc
Confidence 9999999999999999999999999999987643
No 77
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.42 E-value=1e-12 Score=120.92 Aligned_cols=92 Identities=21% Similarity=0.185 Sum_probs=80.1
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------h-hhcccCCCCCCccEEEEeec
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------S-IAFGLGIDKPNVRFVIHHCL 135 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T-~~~~~Gid~~~v~~Vi~~~~ 135 (234)
.+.+++|||+++++++.+++.|+..|.++..+||++++++ | +.+++|+|+|++++||++.+
T Consensus 343 ~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p 422 (501)
T PHA02558 343 KGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHP 422 (501)
T ss_pred cCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecC
Confidence 3567899999999999999999999999999999999775 5 79999999999999999999
Q ss_pred CCCHhHhhhhhcccccCCCceEEEEEeeccc
Q psy4494 136 SKSMENFYQESGRAGRDGQIAHCILYYRLPD 166 (234)
Q Consensus 136 P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d 166 (234)
|.+...|+||+||++|.+......++++.-|
T Consensus 423 ~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD 453 (501)
T PHA02558 423 SKSKIIVLQSIGRVLRKHGSKSIATVWDIID 453 (501)
T ss_pred CcchhhhhhhhhccccCCCCCceEEEEEeec
Confidence 9999999999999999776555555555433
No 78
>PRK09401 reverse gyrase; Reviewed
Probab=99.38 E-value=6e-13 Score=132.02 Aligned_cols=133 Identities=20% Similarity=0.164 Sum_probs=89.7
Q ss_pred HHHhhhccCchhHHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHH-
Q psy4494 10 YLNLWRTSFYQVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKE- 88 (234)
Q Consensus 10 ~l~l~~at~p~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~- 88 (234)
++.+||||.+...+...+-.+.-.+.+........++.+.|.... ++...+.+++.. + +.++||||+|++.
T Consensus 270 q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~~yi~~~------~k~~~L~~ll~~-l-~~~~LIFv~t~~~~ 341 (1176)
T PRK09401 270 VLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVDSYIVDE------DSVEKLVELVKR-L-GDGGLIFVPSDKGK 341 (1176)
T ss_pred eEEEEeCCCCccchHHHHhhccceEEecCcccccCCceEEEEEcc------cHHHHHHHHHHh-c-CCCEEEEEecccCh
Confidence 466889998743111100011111121111122334445554321 244455666643 2 3579999999877
Q ss_pred --HHHHHHHHHHcCCceeeeccCCCchh-----------------hhhcccCCCCCC-ccEEEEeecCC------CHhHh
Q psy4494 89 --CEDLREELRNRGLRVSAYHAKLESNV-----------------SIAFGLGIDKPN-VRFVIHHCLSK------SMENF 142 (234)
Q Consensus 89 --~~~l~~~L~~~~~~~~~~h~~~~~~~-----------------T~~~~~Gid~~~-v~~Vi~~~~P~------~~~~y 142 (234)
++.+++.|+..|+++..+||+|...- |++++||||+|+ |++|||||+|. ..+.|
T Consensus 342 ~~ae~l~~~L~~~gi~v~~~hg~l~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~ 421 (1176)
T PRK09401 342 EYAEELAEYLEDLGINAELAISGFERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAP 421 (1176)
T ss_pred HHHHHHHHHHHHCCCcEEEEeCcHHHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccC
Confidence 99999999999999999999982211 588999999999 89999999998 67789
Q ss_pred hhhhcccc
Q psy4494 143 YQESGRAG 150 (234)
Q Consensus 143 ~qr~GR~g 150 (234)
.||+||+-
T Consensus 422 ~~~~~r~~ 429 (1176)
T PRK09401 422 PFLLLRLL 429 (1176)
T ss_pred HHHHHHHH
Confidence 99999995
No 79
>PRK00254 ski2-like helicase; Provisional
Probab=99.35 E-value=3.2e-12 Score=122.35 Aligned_cols=99 Identities=20% Similarity=0.318 Sum_probs=79.0
Q ss_pred HHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHc---------------------------------CCceeeeccCCC
Q psy4494 65 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR---------------------------------GLRVSAYHAKLE 111 (234)
Q Consensus 65 ~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~---------------------------------~~~~~~~h~~~~ 111 (234)
.+.+.+. .++++||||+|++.|+.++..|... ...+.++||+|+
T Consensus 230 ~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~ 306 (720)
T PRK00254 230 LVYDAVK---KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLG 306 (720)
T ss_pred HHHHHHH---hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCC
Confidence 3444443 4678999999999999988777421 123889999999
Q ss_pred chh------------------hhhcccCCCCCCccEEEE-------eecCC-CHhHhhhhhcccccCC--CceEEEEEee
Q psy4494 112 SNV------------------SIAFGLGIDKPNVRFVIH-------HCLSK-SMENFYQESGRAGRDG--QIAHCILYYR 163 (234)
Q Consensus 112 ~~~------------------T~~~~~Gid~~~v~~Vi~-------~~~P~-~~~~y~qr~GR~gR~g--~~~~~i~~~~ 163 (234)
+++ |+++++|+|+|.+++||. ++.|. ...+|+||+|||||.| ..|.++++..
T Consensus 307 ~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~ 386 (720)
T PRK00254 307 RTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVAT 386 (720)
T ss_pred HHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEec
Confidence 987 999999999999999994 56554 5679999999999965 6799999987
Q ss_pred ccc
Q psy4494 164 LPD 166 (234)
Q Consensus 164 ~~d 166 (234)
..+
T Consensus 387 ~~~ 389 (720)
T PRK00254 387 TEE 389 (720)
T ss_pred Ccc
Confidence 654
No 80
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.33 E-value=1.9e-12 Score=116.65 Aligned_cols=152 Identities=24% Similarity=0.366 Sum_probs=103.0
Q ss_pred HHHHHHHhhhccCchh-HHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhc-------CCC
Q psy4494 6 YTIAYLNLWRTSFYQV-SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRF-------RNQ 77 (234)
Q Consensus 6 ~~~a~l~l~~at~p~~-~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~-------~~~ 77 (234)
|+-||+-.+|||.-+- ..+..++. +.+....-|-.++-+.... .+..+|...+.++.+..+ ..+
T Consensus 370 ~~~AQ~i~LSATVgNp~elA~~l~a-----~lV~y~~RPVplErHlvf~---~~e~eK~~ii~~L~k~E~~~~sskg~rG 441 (830)
T COG1202 370 FPGAQFIYLSATVGNPEELAKKLGA-----KLVLYDERPVPLERHLVFA---RNESEKWDIIARLVKREFSTESSKGYRG 441 (830)
T ss_pred CCCCeEEEEEeecCChHHHHHHhCC-----eeEeecCCCCChhHeeeee---cCchHHHHHHHHHHHHHHhhhhccCcCC
Confidence 3335555566665443 34444444 2333333333333333332 223456666666665332 135
Q ss_pred cEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEE---eecC
Q psy4494 78 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIH---HCLS 136 (234)
Q Consensus 78 ~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~---~~~P 136 (234)
++|||++|++.|+.++..|..+|+++.+||++++..+ |-|++.|+|+|.-+.|+. .+.-
T Consensus 442 QtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~ 521 (830)
T COG1202 442 QTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIE 521 (830)
T ss_pred ceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccc
Confidence 7999999999999999999999999999999999866 889999999995544321 2333
Q ss_pred C-CHhHhhhhhcccccCC--CceEEEEEeecc
Q psy4494 137 K-SMENFYQESGRAGRDG--QIAHCILYYRLP 165 (234)
Q Consensus 137 ~-~~~~y~qr~GR~gR~g--~~~~~i~~~~~~ 165 (234)
| ++.+|.|+.|||||.+ ..|..++++.+.
T Consensus 522 WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 522 WLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred cCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 3 7789999999999976 458888888874
No 81
>PRK01172 ski2-like helicase; Provisional
Probab=99.27 E-value=2.4e-11 Score=115.69 Aligned_cols=99 Identities=24% Similarity=0.260 Sum_probs=76.1
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcC-------------------------CceeeeccCCCchh---------------
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRG-------------------------LRVSAYHAKLESNV--------------- 114 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~-------------------------~~~~~~h~~~~~~~--------------- 114 (234)
.++++||||+|++.++.++..|.... ..+.++||++++++
T Consensus 235 ~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~V 314 (674)
T PRK01172 235 DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKV 314 (674)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeE
Confidence 46789999999999999999987531 12678999999977
Q ss_pred ---hhhcccCCCCCCccEEEEeec---------CCCHhHhhhhhcccccCCC--ceEEEEEeeccc-HHHhhhhH
Q psy4494 115 ---SIAFGLGIDKPNVRFVIHHCL---------SKSMENFYQESGRAGRDGQ--IAHCILYYRLPD-VFKLSSMV 174 (234)
Q Consensus 115 ---T~~~~~Gid~~~v~~Vi~~~~---------P~~~~~y~qr~GR~gR~g~--~~~~i~~~~~~d-~~~~~~~~ 174 (234)
|+++++|+|+|.. .||+++. |-+..+|.||+|||||.|. .|.++++....+ ...+.+.+
T Consensus 315 LvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l 388 (674)
T PRK01172 315 IVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYL 388 (674)
T ss_pred EEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHH
Confidence 9999999999986 4555543 4577899999999999884 577887765433 44444443
No 82
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.25 E-value=1.1e-11 Score=85.19 Aligned_cols=63 Identities=35% Similarity=0.493 Sum_probs=56.1
Q ss_pred HHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccC
Q psy4494 91 DLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRD 152 (234)
Q Consensus 91 ~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~ 152 (234)
.+.+.|+..++.+..+||++++++ |.+++.|+|+++++.||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 466777777888888888887765 88999999999999999999999999999999999997
Q ss_pred C
Q psy4494 153 G 153 (234)
Q Consensus 153 g 153 (234)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 83
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.23 E-value=4.5e-11 Score=112.92 Aligned_cols=101 Identities=14% Similarity=0.043 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhh-cCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh-------------------hhhcccC
Q psy4494 62 CLDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------------------SIAFGLG 121 (234)
Q Consensus 62 ~~~~l~~~l~~~-~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~-------------------T~~~~~G 121 (234)
|+..+..++... .++.++||||++.+.++.++..|. +..+||++++.+ |.+.++|
T Consensus 481 K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeG 555 (732)
T TIGR00603 481 KFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTS 555 (732)
T ss_pred HHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccc
Confidence 445555555432 257799999999999999998883 566899999866 7888999
Q ss_pred CCCCCccEEEEeecC-CCHhHhhhhhcccccCCCceEE-------EEEeecccH
Q psy4494 122 IDKPNVRFVIHHCLS-KSMENFYQESGRAGRDGQIAHC-------ILYYRLPDV 167 (234)
Q Consensus 122 id~~~v~~Vi~~~~P-~~~~~y~qr~GR~gR~g~~~~~-------i~~~~~~d~ 167 (234)
+|+|++++||+++.| .+...|+||+||++|.+..+.+ +.++++...
T Consensus 556 IDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 556 IDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred cCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 999999999999998 5999999999999998765543 667766543
No 84
>KOG0354|consensus
Probab=99.15 E-value=2.9e-10 Score=106.34 Aligned_cols=106 Identities=20% Similarity=0.332 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhhc---CCCcEEEEecchHHHHHHHHHHHH---cCCceeeecc--------CCCchh-----------
Q psy4494 60 KDCLDELADLMSRRF---RNQSGIIYTTSIKECEDLREELRN---RGLRVSAYHA--------KLESNV----------- 114 (234)
Q Consensus 60 ~~~~~~l~~~l~~~~---~~~~~iIf~~t~~~~~~l~~~L~~---~~~~~~~~h~--------~~~~~~----------- 114 (234)
..+++.+.+++.+.+ +..++||||.+|..|+.+..+|.+ .|+++..+-| +|++++
T Consensus 394 npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G 473 (746)
T KOG0354|consen 394 NPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG 473 (746)
T ss_pred ChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCC
Confidence 356777777776443 467899999999999999999983 2455555554 344443
Q ss_pred -------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccH
Q psy4494 115 -------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDV 167 (234)
Q Consensus 115 -------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~ 167 (234)
|++...|+|++.+++||.||.-.++...+||.|| ||.- .|.++++++....
T Consensus 474 ~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~-ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 474 EINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR-NSKCVLLTTGSEV 531 (746)
T ss_pred CccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc-CCeEEEEEcchhH
Confidence 9999999999999999999999999999999999 8974 4667777775433
No 85
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.15 E-value=2.8e-10 Score=113.29 Aligned_cols=73 Identities=26% Similarity=0.485 Sum_probs=62.0
Q ss_pred HHHHHHHHhhcCCCcEEEEecch---HHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCC
Q psy4494 64 DELADLMSRRFRNQSGIIYTTSI---KECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGI 122 (234)
Q Consensus 64 ~~l~~~l~~~~~~~~~iIf~~t~---~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gi 122 (234)
..|.+++.. + +.++||||+|+ +.|++++..|+..|+++..+||+++++. |++++|||
T Consensus 316 ~~L~~ll~~-l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~~~l~~Fr~G~~~vLVata~~tdv~aRGI 393 (1171)
T TIGR01054 316 ETLLEIVKK-L-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPKEDYEKFAEGEIDVLIGVASYYGTLVRGL 393 (1171)
T ss_pred HHHHHHHHH-c-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCHHHHHHHHcCCCCEEEEeccccCcccccC
Confidence 345555543 2 45799999999 9999999999999999999999996543 48899999
Q ss_pred CCCC-ccEEEEeecCCC
Q psy4494 123 DKPN-VRFVIHHCLSKS 138 (234)
Q Consensus 123 d~~~-v~~Vi~~~~P~~ 138 (234)
|+|+ |++|||||+|..
T Consensus 394 Dip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 394 DLPERVRYAVFLGVPKF 410 (1171)
T ss_pred CCCccccEEEEECCCCE
Confidence 9999 899999999975
No 86
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.13 E-value=3.3e-10 Score=107.99 Aligned_cols=109 Identities=25% Similarity=0.263 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHHh-hcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh----------------hhhcccC
Q psy4494 59 QKDCLDELADLMSR-RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLG 121 (234)
Q Consensus 59 ~~~~~~~l~~~l~~-~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~----------------T~~~~~G 121 (234)
..++...+.+.+.+ ...+.|+||||+|++.++.++..|...|++...+||.....+ |+.+|||
T Consensus 412 ~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnakq~eREa~Iia~Ag~~g~VtIATNmAGRG 491 (830)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAKNHEREAEIIAQAGRPGAVTIATNMAGRG 491 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCchHHHHHHHHHhcCCCceEEEecccccCC
Confidence 45677778777754 235789999999999999999999999999999999744433 9999999
Q ss_pred CCCCCc------------------------------c--------EEEEeecCCCHhHhhhhhcccccCCCceEEEEEee
Q psy4494 122 IDKPNV------------------------------R--------FVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYR 163 (234)
Q Consensus 122 id~~~v------------------------------~--------~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~ 163 (234)
+|++-= . +||--..|.|..---|-.||+||.|.+|.+-.|++
T Consensus 492 tDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lS 571 (830)
T PRK12904 492 TDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLS 571 (830)
T ss_pred cCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEE
Confidence 999832 1 69988999999999999999999999999999999
Q ss_pred cccH
Q psy4494 164 LPDV 167 (234)
Q Consensus 164 ~~d~ 167 (234)
-+|-
T Consensus 572 leD~ 575 (830)
T PRK12904 572 LEDD 575 (830)
T ss_pred cCcH
Confidence 8764
No 87
>KOG4150|consensus
Probab=99.09 E-value=1.1e-09 Score=99.17 Aligned_cols=134 Identities=21% Similarity=0.250 Sum_probs=96.5
Q ss_pred CcEEEEEeeccCCCcceEEEEEEcC-----CChHHHHHHHHHHHHhh-cCCCcEEEEecchHHHHHHHHHHHHc----C-
Q psy4494 32 PNVRFVIHHCLSKSMENFYQVRIKP-----AAQKDCLDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNR----G- 100 (234)
Q Consensus 32 ~~i~~~~~~~~~~~~~~~y~v~~~~-----~~~~~~~~~l~~~l~~~-~~~~~~iIf~~t~~~~~~l~~~L~~~----~- 100 (234)
..+.++-....|.+..++..+.+.. .+++.++.+..+++.+- ..+-++|-||.+++.||-+....++- +
T Consensus 475 ~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~ 554 (1034)
T KOG4150|consen 475 SELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAP 554 (1034)
T ss_pred cceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhH
Confidence 3455555566777777777766532 12333444433333221 25778999999999999887665532 1
Q ss_pred ---CceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEE
Q psy4494 101 ---LRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCI 159 (234)
Q Consensus 101 ---~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i 159 (234)
-.+..|.|+...++ |+|+..|||+.+.+.|++.++|.++.++.|+.|||||..+++.++
T Consensus 555 ~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLav 634 (1034)
T KOG4150|consen 555 HLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAV 634 (1034)
T ss_pred HHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEE
Confidence 01445666666554 999999999999999999999999999999999999999998888
Q ss_pred EEeecc
Q psy4494 160 LYYRLP 165 (234)
Q Consensus 160 ~~~~~~ 165 (234)
......
T Consensus 635 yva~~~ 640 (1034)
T KOG4150|consen 635 YVAFLG 640 (1034)
T ss_pred EEEecc
Confidence 877653
No 88
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.06 E-value=1.3e-09 Score=104.29 Aligned_cols=110 Identities=25% Similarity=0.273 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHHh-hcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh----------------hhhcccC
Q psy4494 59 QKDCLDELADLMSR-RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLG 121 (234)
Q Consensus 59 ~~~~~~~l~~~l~~-~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~----------------T~~~~~G 121 (234)
..+|...+.+.+.+ ...+.|+||||+|++.++.++..|...|++...+||.+.+.+ |+.+|||
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~VtIATNmAGRG 505 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGAVTIATNMAGRG 505 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCcEEEeccCccCC
Confidence 44566666665543 236789999999999999999999999999999999998776 9999999
Q ss_pred CCCCC---------------------------------cc-----EEEEeecCCCHhHhhhhhcccccCCCceEEEEEee
Q psy4494 122 IDKPN---------------------------------VR-----FVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYR 163 (234)
Q Consensus 122 id~~~---------------------------------v~-----~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~ 163 (234)
+|+.- |. +||--..+.|..-=.|-.||+||.|.+|.+-.|++
T Consensus 506 tDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lS 585 (896)
T PRK13104 506 TDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLS 585 (896)
T ss_pred cceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEE
Confidence 99971 21 68888888888888999999999999999999999
Q ss_pred cccHH
Q psy4494 164 LPDVF 168 (234)
Q Consensus 164 ~~d~~ 168 (234)
-+|-.
T Consensus 586 leD~l 590 (896)
T PRK13104 586 LEDNL 590 (896)
T ss_pred cCcHH
Confidence 87643
No 89
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.02 E-value=5.3e-09 Score=94.10 Aligned_cols=115 Identities=26% Similarity=0.349 Sum_probs=95.0
Q ss_pred cceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh-----------
Q psy4494 46 MENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------- 114 (234)
Q Consensus 46 ~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~----------- 114 (234)
++--.+|.+.....++++.++.+... .+.+++|-+-|++.+|.|.++|.+.|+++.++|++.+.-+
T Consensus 419 lDP~ievRp~~~QvdDL~~EI~~r~~---~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G 495 (663)
T COG0556 419 LDPEIEVRPTKGQVDDLLSEIRKRVA---KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLG 495 (663)
T ss_pred CCCceeeecCCCcHHHHHHHHHHHHh---cCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcC
Confidence 34445666666777888888887765 5689999999999999999999999999999999998765
Q ss_pred -------hhhcccCCCCCCccEEEEeec-----CCCHhHhhhhhcccccCCCceEEEEEeec
Q psy4494 115 -------SIAFGLGIDKPNVRFVIHHCL-----SKSMENFYQESGRAGRDGQIAHCILYYRL 164 (234)
Q Consensus 115 -------T~~~~~Gid~~~v~~Vi~~~~-----P~~~~~y~qr~GR~gR~g~~~~~i~~~~~ 164 (234)
-+.+-.|+|+|.|.+|..+|. ..|-.+++|-+|||.|.-+ |.+|+|.+.
T Consensus 496 ~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~-GkvIlYAD~ 556 (663)
T COG0556 496 EFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKVILYADK 556 (663)
T ss_pred CccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccC-CeEEEEchh
Confidence 556667999999999998865 4578899999999999753 677887654
No 90
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.01 E-value=2.4e-09 Score=104.06 Aligned_cols=155 Identities=20% Similarity=0.209 Sum_probs=111.7
Q ss_pred chHHHHHHHhhhccCchhHHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEe
Q psy4494 4 LLYTIAYLNLWRTSFYQVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYT 83 (234)
Q Consensus 4 ~~~~~a~l~l~~at~p~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~ 83 (234)
+.-++.-|+|..+..|+..-++.+|+..=.+ +...+.++....=.|. +.+..-..+.|..-+ .+++++..-+
T Consensus 739 Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSv---I~TPP~~R~pV~T~V~--~~d~~~ireAI~REl---~RgGQvfYv~ 810 (1139)
T COG1197 739 LRANVDVLTLSATPIPRTLNMSLSGIRDLSV---IATPPEDRLPVKTFVS--EYDDLLIREAILREL---LRGGQVFYVH 810 (1139)
T ss_pred HhccCcEEEeeCCCCcchHHHHHhcchhhhh---ccCCCCCCcceEEEEe--cCChHHHHHHHHHHH---hcCCEEEEEe
Confidence 3345566788888899988888888832111 1111222222222222 222222333444333 3678877778
Q ss_pred cchHHHHHHHHHHHHc--CCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCC-CHhHh
Q psy4494 84 TSIKECEDLREELRNR--GLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSK-SMENF 142 (234)
Q Consensus 84 ~t~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~-~~~~y 142 (234)
|..+..++++..|++. ..++.+-||.|+..+ |.....|||+|+++.+|..+.-. .+.+.
T Consensus 811 NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQL 890 (1139)
T COG1197 811 NRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQL 890 (1139)
T ss_pred cchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHH
Confidence 9999999999999987 667999999999987 88889999999999888766543 68899
Q ss_pred hhhhcccccCCCceEEEEEeeccc
Q psy4494 143 YQESGRAGRDGQIAHCILYYRLPD 166 (234)
Q Consensus 143 ~qr~GR~gR~g~~~~~i~~~~~~d 166 (234)
+|-.||.||..+.+.|+++|++..
T Consensus 891 yQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 891 YQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred HHhccccCCccceEEEEEeecCcc
Confidence 999999999999999999998754
No 91
>PRK09694 helicase Cas3; Provisional
Probab=99.01 E-value=3.6e-09 Score=102.44 Aligned_cols=88 Identities=14% Similarity=0.289 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcC---CceeeeccCCCchh-----------------------
Q psy4494 61 DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRG---LRVSAYHAKLESNV----------------------- 114 (234)
Q Consensus 61 ~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~----------------------- 114 (234)
..+..+.+.+. .+++++|||||++.++++++.|++.+ ..+..+||.+...+
T Consensus 548 ~~l~~i~~~~~---~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~I 624 (878)
T PRK09694 548 TLLQRMIAAAN---AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRI 624 (878)
T ss_pred HHHHHHHHHHh---cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeE
Confidence 34444444433 56789999999999999999999764 67999999987543
Q ss_pred ---hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCC
Q psy4494 115 ---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQ 154 (234)
Q Consensus 115 ---T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~ 154 (234)
|.++.+|+|+ +++.+|....| ++.++||+||+||.++
T Consensus 625 LVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 625 LVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 8888999999 48999998888 6799999999999775
No 92
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.98 E-value=3.7e-09 Score=101.12 Aligned_cols=108 Identities=22% Similarity=0.231 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHh-hcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh----------------hhhcccCC
Q psy4494 60 KDCLDELADLMSR-RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLGI 122 (234)
Q Consensus 60 ~~~~~~l~~~l~~-~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~----------------T~~~~~Gi 122 (234)
.+|...+.+-+.+ ...+.|+||||+|++.++.++..|...|++...+|+.+++.+ |+.+|||+
T Consensus 432 ~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~VtIATnmAGRGT 511 (908)
T PRK13107 432 DEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGAVTIATNMAGRGT 511 (908)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCcEEEecCCcCCCc
Confidence 4566666555442 235789999999999999999999999999999999998776 99999999
Q ss_pred CCCC--------------------------------cc-----EEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecc
Q psy4494 123 DKPN--------------------------------VR-----FVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLP 165 (234)
Q Consensus 123 d~~~--------------------------------v~-----~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~ 165 (234)
|+.- |. +||--..+.|..-=.|-.||+||.|.+|.+..|++.+
T Consensus 512 DIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlE 591 (908)
T PRK13107 512 DIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSME 591 (908)
T ss_pred ceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeC
Confidence 9972 21 7888888998888899999999999999999999987
Q ss_pred cH
Q psy4494 166 DV 167 (234)
Q Consensus 166 d~ 167 (234)
|-
T Consensus 592 D~ 593 (908)
T PRK13107 592 DS 593 (908)
T ss_pred cH
Confidence 74
No 93
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.84 E-value=3.7e-08 Score=96.63 Aligned_cols=104 Identities=20% Similarity=0.163 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhh-cCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh---------------------hhhcc
Q psy4494 62 CLDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---------------------SIAFG 119 (234)
Q Consensus 62 ~~~~l~~~l~~~-~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~---------------------T~~~~ 119 (234)
++..|.+++..- ..+.++|||+......+.|..+|...|+....++|+++.++ |.+.|
T Consensus 472 Kl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGG 551 (1033)
T PLN03142 472 KMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGG 551 (1033)
T ss_pred HHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccc
Confidence 444444444321 14679999999999999999999999999999999998654 88999
Q ss_pred cCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEE--EEEeecc
Q psy4494 120 LGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHC--ILYYRLP 165 (234)
Q Consensus 120 ~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~--i~~~~~~ 165 (234)
.|||+...++||+||+|+++....|++||+-|.|+...+ +-|+...
T Consensus 552 lGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 552 LGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred cCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 999999999999999999999999999999999977443 3344443
No 94
>KOG0948|consensus
Probab=98.77 E-value=7.5e-08 Score=89.66 Aligned_cols=99 Identities=25% Similarity=0.426 Sum_probs=71.3
Q ss_pred HHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCc---------------------------------------eee
Q psy4494 65 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLR---------------------------------------VSA 105 (234)
Q Consensus 65 ~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~---------------------------------------~~~ 105 (234)
.+++.+... +..++|||+=|+++||..|..+....++ +..
T Consensus 373 kiVkmi~~~-~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGI 451 (1041)
T KOG0948|consen 373 KIVKMIMER-NYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGI 451 (1041)
T ss_pred HHHHHHHhh-cCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhcccc
Confidence 444444332 4578999999999999999888643221 566
Q ss_pred eccCCCchh------------------hhhcccCCCCCCccEEEEeecCC---------CHhHhhhhhcccccCCC--ce
Q psy4494 106 YHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSK---------SMENFYQESGRAGRDGQ--IA 156 (234)
Q Consensus 106 ~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~---------~~~~y~qr~GR~gR~g~--~~ 156 (234)
.|||+-+-- |..|++|+|.|. +.|+.-..-+ +.-.|+|+.|||||.|. .|
T Consensus 452 HHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPA-kTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrG 530 (1041)
T KOG0948|consen 452 HHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPA-KTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRG 530 (1041)
T ss_pred ccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcc-eeEEEeeccccCCcceeeecccceEEecccccccCCCCCc
Confidence 777766521 999999999994 4554432221 45699999999999875 59
Q ss_pred EEEEEeecc
Q psy4494 157 HCILYYRLP 165 (234)
Q Consensus 157 ~~i~~~~~~ 165 (234)
.+|++++..
T Consensus 531 ivIlmiDek 539 (1041)
T KOG0948|consen 531 IVILMIDEK 539 (1041)
T ss_pred eEEEEecCc
Confidence 999998764
No 95
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.77 E-value=3.5e-08 Score=95.67 Aligned_cols=90 Identities=32% Similarity=0.391 Sum_probs=78.7
Q ss_pred CCCcEEEEecchHHHHHHH----HHHHHcC----CceeeeccCCCchh------------------hhhcccCCCCCCcc
Q psy4494 75 RNQSGIIYTTSIKECEDLR----EELRNRG----LRVSAYHAKLESNV------------------SIAFGLGIDKPNVR 128 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~----~~L~~~~----~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~ 128 (234)
.+.++|+|+.+++.++.+. ..+...+ ..+..|+|++..++ |.++..|||+.+++
T Consensus 305 ~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ld 384 (851)
T COG1205 305 NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLD 384 (851)
T ss_pred cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhh
Confidence 5778999999999999997 3444444 56889999999877 99999999999999
Q ss_pred EEEEeecCC-CHhHhhhhhcccccCCCceEEEEEeec
Q psy4494 129 FVIHHCLSK-SMENFYQESGRAGRDGQIAHCILYYRL 164 (234)
Q Consensus 129 ~Vi~~~~P~-~~~~y~qr~GR~gR~g~~~~~i~~~~~ 164 (234)
.||+++.|. +..+++||.||+||.++.+..+..+..
T Consensus 385 avi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~ 421 (851)
T COG1205 385 AVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRS 421 (851)
T ss_pred hHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCC
Confidence 999999999 899999999999999988877777764
No 96
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.76 E-value=6e-08 Score=89.38 Aligned_cols=77 Identities=26% Similarity=0.334 Sum_probs=61.2
Q ss_pred HHHHHHHHHHc--CCceeeeccCCCchh--------------------hhhcccCCCCCCccEEE--Eeec----CC---
Q psy4494 89 CEDLREELRNR--GLRVSAYHAKLESNV--------------------SIAFGLGIDKPNVRFVI--HHCL----SK--- 137 (234)
Q Consensus 89 ~~~l~~~L~~~--~~~~~~~h~~~~~~~--------------------T~~~~~Gid~~~v~~Vi--~~~~----P~--- 137 (234)
++++.+.|++. +.++..+|++++... |..+++|+|+|+|++|+ ++|. |.
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra 350 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRA 350 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccch
Confidence 58888999876 788999999987542 99999999999999985 5554 32
Q ss_pred ---CHhHhhhhhcccccCCCceEEEEE-eecc
Q psy4494 138 ---SMENFYQESGRAGRDGQIAHCILY-YRLP 165 (234)
Q Consensus 138 ---~~~~y~qr~GR~gR~g~~~~~i~~-~~~~ 165 (234)
....|+|.+||+||.++.|.+++. +.++
T Consensus 351 ~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 351 AERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred HHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 245789999999999999988853 3443
No 97
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.73 E-value=7.5e-08 Score=95.75 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=66.1
Q ss_pred CCcEEEEecchHHHHHHHHHHHHc------CC---ceeeeccCCCchh-----------------hhhcccCCCCCCccE
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNR------GL---RVSAYHAKLESNV-----------------SIAFGLGIDKPNVRF 129 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~------~~---~~~~~h~~~~~~~-----------------T~~~~~Gid~~~v~~ 129 (234)
++++||||.+++.|+.+++.|.+. +. .+..+||+.+..+ ++.+++|+|+|.|..
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~ 777 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDKPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICN 777 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccchHHHHHHHhCCCCCeEEEEecccccCCCcccccE
Confidence 478999999999999999988753 22 3566888876543 788899999999999
Q ss_pred EEEeecCCCHhHhhhhhcccccC
Q psy4494 130 VIHHCLSKSMENFYQESGRAGRD 152 (234)
Q Consensus 130 Vi~~~~P~~~~~y~qr~GR~gR~ 152 (234)
||.+.++.|...|+|++||+.|-
T Consensus 778 vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 778 LVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred EEEecCCCCHHHHHHHHhhhccC
Confidence 99999999999999999999994
No 98
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.72 E-value=8.2e-08 Score=91.53 Aligned_cols=109 Identities=21% Similarity=0.261 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHhh-cCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh----------------hhhcccC
Q psy4494 59 QKDCLDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLG 121 (234)
Q Consensus 59 ~~~~~~~l~~~l~~~-~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~----------------T~~~~~G 121 (234)
..++...+.+-+... ..++|+||.|.|.+..+.++..|...|++...+++.....+ |+.+|||
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~EA~IIa~AG~~GaVTIATNMAGRG 487 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREAEIIAKAGQKGAITIATNMAGRG 487 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhHHHHHHhCCCCCeEEEecccccCC
Confidence 345666666655432 36789999999999999999999999999888888655444 9999999
Q ss_pred CCCCCcc--------EEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccH
Q psy4494 122 IDKPNVR--------FVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDV 167 (234)
Q Consensus 122 id~~~v~--------~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~ 167 (234)
.||.--. +||....|.+..---|-.||+||.|.+|.+-.|++-.|-
T Consensus 488 TDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 488 TDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred cCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchH
Confidence 9997322 899999999988778999999999999999999988663
No 99
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.67 E-value=1.3e-07 Score=88.91 Aligned_cols=109 Identities=26% Similarity=0.311 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHhh-cCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh----------------hhhcccC
Q psy4494 59 QKDCLDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLG 121 (234)
Q Consensus 59 ~~~~~~~l~~~l~~~-~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~----------------T~~~~~G 121 (234)
..++...+.+-+.+. ..+.|+||.+.|.+..|.++..|.+.|++...+++.....+ |+.+|||
T Consensus 409 ~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~~gaVTIATNMAGRG 488 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGKYGAVTVSTQMAGRG 488 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCCCCcEEEEecCCCCc
Confidence 455666666555432 36889999999999999999999999999999988765544 9999999
Q ss_pred CCCC----------Ccc-----EEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccH
Q psy4494 122 IDKP----------NVR-----FVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDV 167 (234)
Q Consensus 122 id~~----------~v~-----~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~ 167 (234)
.||. .|. +||-...|.|..--.|-.||+||.|.+|.+..|++-+|-
T Consensus 489 TDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 489 TDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred cCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 9997 222 799999999999999999999999999999999998764
No 100
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.67 E-value=1.7e-07 Score=85.15 Aligned_cols=88 Identities=20% Similarity=0.322 Sum_probs=74.8
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLS 136 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P 136 (234)
...+++||+.++..++.++..+...|+ +..+.|..+..+ +..+..|+|+|+++.+|.....
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t 360 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPT 360 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCC
Confidence 467899999999999999999998887 778888888776 6678889999999999999999
Q ss_pred CCHhHhhhhhccccc--CCCceEEEEEee
Q psy4494 137 KSMENFYQESGRAGR--DGQIAHCILYYR 163 (234)
Q Consensus 137 ~~~~~y~qr~GR~gR--~g~~~~~i~~~~ 163 (234)
.+...|+||+||.-| .|.....+++|.
T Consensus 361 ~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~ 389 (442)
T COG1061 361 GSRRLFIQRLGRGLRPAEGKEDTLALDYS 389 (442)
T ss_pred CcHHHHHHHhhhhccCCCCCCceEEEEEE
Confidence 999999999999999 344444444443
No 101
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.61 E-value=5.3e-07 Score=86.57 Aligned_cols=100 Identities=22% Similarity=0.305 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHH---c------------------C----------------Ccee
Q psy4494 62 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRN---R------------------G----------------LRVS 104 (234)
Q Consensus 62 ~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~---~------------------~----------------~~~~ 104 (234)
.+..+.+.+. .++++||||+|++.+...|..|+. . + .-+.
T Consensus 242 ~~~~v~~~~~---~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gva 318 (766)
T COG1204 242 ALELVLESLA---EGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVA 318 (766)
T ss_pred HHHHHHHHHh---cCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcc
Confidence 3344444443 578899999999999999999982 0 0 0156
Q ss_pred eeccCCCchh------------------hhhcccCCCCCCccEEE----Eee-----cCCCHhHhhhhhcccccCC--Cc
Q psy4494 105 AYHAKLESNV------------------SIAFGLGIDKPNVRFVI----HHC-----LSKSMENFYQESGRAGRDG--QI 155 (234)
Q Consensus 105 ~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi----~~~-----~P~~~~~y~qr~GR~gR~g--~~ 155 (234)
..|++++.+. |..++.|+|.|.=+.|| -|+ .+-+.-+|.|+.|||||.| ..
T Consensus 319 fHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~ 398 (766)
T COG1204 319 FHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDY 398 (766)
T ss_pred ccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCC
Confidence 7788888766 99999999999444443 245 4556779999999999976 34
Q ss_pred eEEEEEeec
Q psy4494 156 AHCILYYRL 164 (234)
Q Consensus 156 ~~~i~~~~~ 164 (234)
|.++++...
T Consensus 399 G~~~i~~~~ 407 (766)
T COG1204 399 GEAIILATS 407 (766)
T ss_pred CcEEEEecC
Confidence 667776633
No 102
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.61 E-value=2.8e-07 Score=87.83 Aligned_cols=76 Identities=25% Similarity=0.241 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHc--CCceeeeccCCCchh--------------------hhhcccCCCCCCccEEEEe--ecCCC-----
Q psy4494 88 ECEDLREELRNR--GLRVSAYHAKLESNV--------------------SIAFGLGIDKPNVRFVIHH--CLSKS----- 138 (234)
Q Consensus 88 ~~~~l~~~L~~~--~~~~~~~h~~~~~~~--------------------T~~~~~Gid~~~v~~Vi~~--~~P~~----- 138 (234)
.++.+++.|++. +.++..+|+++.+.. |..+++|+|+|+|++|+.+ |.+-+
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfr 517 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFR 517 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccc
Confidence 567888888876 788999999986421 9999999999999999655 44433
Q ss_pred -----HhHhhhhhcccccCCCceEEEEEee
Q psy4494 139 -----MENFYQESGRAGRDGQIAHCILYYR 163 (234)
Q Consensus 139 -----~~~y~qr~GR~gR~g~~~~~i~~~~ 163 (234)
...|+|++||+||.+..|.+++.-.
T Consensus 518 a~Er~~~~l~q~~GRagR~~~~g~viiqT~ 547 (679)
T PRK05580 518 ASERTFQLLTQVAGRAGRAEKPGEVLIQTY 547 (679)
T ss_pred hHHHHHHHHHHHHhhccCCCCCCEEEEEeC
Confidence 2579999999999999999986543
No 103
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.51 E-value=7.7e-07 Score=85.68 Aligned_cols=95 Identities=24% Similarity=0.342 Sum_probs=81.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHH----cCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEE
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRN----RGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIH 132 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~ 132 (234)
..+..+||.+-.++.+++.+.|.+ ..+.+.++||.++.++ |+.+..+|-|++|++||.
T Consensus 258 ~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VID 337 (845)
T COG1643 258 GSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVID 337 (845)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEec
Confidence 467899999999999999999998 3577999999999877 999999999999999998
Q ss_pred eecC------------------CCHhHhhhhhcccccCCCceEEEEEeecccHHHh
Q psy4494 133 HCLS------------------KSMENFYQESGRAGRDGQIAHCILYYRLPDVFKL 170 (234)
Q Consensus 133 ~~~P------------------~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~ 170 (234)
-+.- -|-.+-.||.|||||-+ +|.|+=+|+..++..+
T Consensus 338 sG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~~~ 392 (845)
T COG1643 338 SGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFLAF 392 (845)
T ss_pred CCcccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHHhc
Confidence 7653 34558899999999986 6999999998776643
No 104
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.47 E-value=2.4e-06 Score=79.55 Aligned_cols=104 Identities=21% Similarity=0.455 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEecchH--------HHHHHHHHHHHc--CCceeeeccCCCchh---------------
Q psy4494 60 KDCLDELADLMSRRFRNQSGIIYTTSIK--------ECEDLREELRNR--GLRVSAYHAKLESNV--------------- 114 (234)
Q Consensus 60 ~~~~~~l~~~l~~~~~~~~~iIf~~t~~--------~~~~l~~~L~~~--~~~~~~~h~~~~~~~--------------- 114 (234)
.+.++.+.+-+. .+.++.+-|+-++ .++++++.|+.. +.++..+||.|..++
T Consensus 460 ~~v~e~i~~ei~---~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~I 536 (677)
T COG1200 460 PEVYERIREEIA---KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDI 536 (677)
T ss_pred HHHHHHHHHHHH---cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcE
Confidence 334444444443 4667888786544 566777888754 667999999999766
Q ss_pred ---hhhcccCCCCCCccEEEEeecCC-CHhHhhhhhcccccCCCceEEEEEeeccc
Q psy4494 115 ---SIAFGLGIDKPNVRFVIHHCLSK-SMENFYQESGRAGRDGQIAHCILYYRLPD 166 (234)
Q Consensus 115 ---T~~~~~Gid~~~v~~Vi~~~~P~-~~~~y~qr~GR~gR~g~~~~~i~~~~~~d 166 (234)
|.+...|+|+|+....|..+.-. .+.+.=|-.||.||.+.++.|++++.+..
T Consensus 537 LVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 537 LVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 99999999999999999887654 57788899999999999999999998754
No 105
>KOG0950|consensus
Probab=98.46 E-value=3.7e-07 Score=87.06 Aligned_cols=100 Identities=24% Similarity=0.375 Sum_probs=77.7
Q ss_pred CCcEEEEecchHHHHHHHHHHHHc--------------------------------------CCceeeeccCCCchh---
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNR--------------------------------------GLRVSAYHAKLESNV--- 114 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~--------------------------------------~~~~~~~h~~~~~~~--- 114 (234)
+.++||||++++.|+.+|..+... ..-+++.|++++.++
T Consensus 460 ~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~ 539 (1008)
T KOG0950|consen 460 GSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREI 539 (1008)
T ss_pred CCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHH
Confidence 456999999999999999666420 111778888888876
Q ss_pred ---------------hhhcccCCCCCCccEEEEe---ec-CCCHhHhhhhhcccccCCC--ceEEEEEeecccHHHhhhh
Q psy4494 115 ---------------SIAFGLGIDKPNVRFVIHH---CL-SKSMENFYQESGRAGRDGQ--IAHCILYYRLPDVFKLSSM 173 (234)
Q Consensus 115 ---------------T~~~~~Gid~~~v~~Vi~~---~~-P~~~~~y~qr~GR~gR~g~--~~~~i~~~~~~d~~~~~~~ 173 (234)
|+.++.|++.|..+++|-. +. +.+...|.|++|||||.|- .|.+|++..+.+......+
T Consensus 540 iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 540 IEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred HHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHH
Confidence 8889999999988777754 22 2366699999999999874 5999999999997766655
Q ss_pred HH
Q psy4494 174 VF 175 (234)
Q Consensus 174 ~~ 175 (234)
+.
T Consensus 620 v~ 621 (1008)
T KOG0950|consen 620 VN 621 (1008)
T ss_pred Hh
Confidence 43
No 106
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.41 E-value=2e-06 Score=82.99 Aligned_cols=109 Identities=19% Similarity=0.222 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHh-hcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh----------------hhhcccCC
Q psy4494 60 KDCLDELADLMSR-RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLGI 122 (234)
Q Consensus 60 ~~~~~~l~~~l~~-~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~----------------T~~~~~Gi 122 (234)
.++...+.+-+.+ ...+.|+||-|.|....+.++..|...|++...+++.....+ |+.+|||.
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~AG~~g~VTIATNmAGRGT 630 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAGAGKLGAVTVATNMAGRGT 630 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHHhcCCCCcEEEeeccccCCc
Confidence 4566655554432 235788999999999999999999999999888888755444 88999999
Q ss_pred CCC---Ccc-----EEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHH
Q psy4494 123 DKP---NVR-----FVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVF 168 (234)
Q Consensus 123 d~~---~v~-----~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~ 168 (234)
||. .|. +||.-..|.+..--.|-.||+||.|.+|.+..|++-+|-.
T Consensus 631 DIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDdL 684 (970)
T PRK12899 631 DIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDRL 684 (970)
T ss_pred ccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchHH
Confidence 986 222 7999999999999999999999999999999999987643
No 107
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.41 E-value=1.2e-06 Score=84.22 Aligned_cols=109 Identities=22% Similarity=0.254 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhh-cCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh----------------hhhcccCC
Q psy4494 60 KDCLDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLGI 122 (234)
Q Consensus 60 ~~~~~~l~~~l~~~-~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~----------------T~~~~~Gi 122 (234)
.+|...+.+-+... ..+.|+||-+.|.+..|.++..|...|++...+++.....+ |+.+|||.
T Consensus 432 ~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~~GaVTIATNMAGRGT 511 (913)
T PRK13103 432 EEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGRPGALTIATNMAGRGT 511 (913)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCCCCcEEEeccCCCCCC
Confidence 45666666555432 35889999999999999999999999998877777655544 99999999
Q ss_pred CCC--------------------------------Ccc-----EEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecc
Q psy4494 123 DKP--------------------------------NVR-----FVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLP 165 (234)
Q Consensus 123 d~~--------------------------------~v~-----~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~ 165 (234)
||. .|. +||--..|.|..-=.|-.||+||.|.+|.+-.|++.+
T Consensus 512 DIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlE 591 (913)
T PRK13103 512 DILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLE 591 (913)
T ss_pred CEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcC
Confidence 995 232 7898889999888899999999999999999999987
Q ss_pred cHH
Q psy4494 166 DVF 168 (234)
Q Consensus 166 d~~ 168 (234)
|-.
T Consensus 592 D~L 594 (913)
T PRK13103 592 DSL 594 (913)
T ss_pred cHH
Confidence 643
No 108
>KOG0952|consensus
Probab=98.37 E-value=7.6e-06 Score=79.01 Aligned_cols=157 Identities=15% Similarity=0.194 Sum_probs=103.7
Q ss_pred hhccCchh-HHHHhhCCCCC-cEEEEEeeccCCCcceEEEEEEcCC-------ChHHHHHHHHHHHHhhcCCCcEEEEec
Q psy4494 14 WRTSFYQV-SIAFGLGIDKP-NVRFVIHHCLSKSMENFYQVRIKPA-------AQKDCLDELADLMSRRFRNQSGIIYTT 84 (234)
Q Consensus 14 ~~at~p~~-~i~~~~~~~~~-~i~~~~~~~~~~~~~~~y~v~~~~~-------~~~~~~~~l~~~l~~~~~~~~~iIf~~ 84 (234)
+|||.|+. +++-.++.+++ .+.+....--|-.+...+.-.+... -..-+..++.+.++ .+.+++|||.
T Consensus 281 LSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~---~g~qVlvFvh 357 (1230)
T KOG0952|consen 281 LSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQ---EGHQVLVFVH 357 (1230)
T ss_pred eeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHH---cCCeEEEEEe
Confidence 68999996 77777888753 3433322222222333222222210 01224455666665 5778999999
Q ss_pred chHHHHHHHHHHHHc----CCc-------------------eeeeccCCCchh------------------hhhcccCCC
Q psy4494 85 SIKECEDLREELRNR----GLR-------------------VSAYHAKLESNV------------------SIAFGLGID 123 (234)
Q Consensus 85 t~~~~~~l~~~L~~~----~~~-------------------~~~~h~~~~~~~------------------T~~~~~Gid 123 (234)
+++.+-+.|+.|.+. |.. ....|+||..+. |..++.|++
T Consensus 358 sR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVN 437 (1230)
T KOG0952|consen 358 SRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVN 437 (1230)
T ss_pred cChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccC
Confidence 999999999999743 111 456677776655 889999999
Q ss_pred CCCccEEEEeecCC-----------CHhHhhhhhcccccC--CCceEEEEEeecccHHHhhhhH
Q psy4494 124 KPNVRFVIHHCLSK-----------SMENFYQESGRAGRD--GQIAHCILYYRLPDVFKLSSMV 174 (234)
Q Consensus 124 ~~~v~~Vi~~~~P~-----------~~~~y~qr~GR~gR~--g~~~~~i~~~~~~d~~~~~~~~ 174 (234)
.| ..+||..+.+- +..+.+|-.|||||. +..|.++++-+..-+.....++
T Consensus 438 LP-A~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl 500 (1230)
T KOG0952|consen 438 LP-AYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLL 500 (1230)
T ss_pred Cc-ceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHH
Confidence 99 67788776652 355889999999994 5679888887766666555554
No 109
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.35 E-value=2.8e-06 Score=82.51 Aligned_cols=109 Identities=24% Similarity=0.271 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHh-hcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh----------------hhhcccCC
Q psy4494 60 KDCLDELADLMSR-RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLGI 122 (234)
Q Consensus 60 ~~~~~~l~~~l~~-~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~----------------T~~~~~Gi 122 (234)
.+|...+.+-+.+ ...++|+||-+.|.+..|.++..|...|++...+++.....+ |+-+|||.
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~GaVTIATNMAGRGT 690 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPGTVTIATNMAGRGT 690 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCCcEEEeccCcCCCc
Confidence 4566666555443 236889999999999999999999999999888877665544 88999999
Q ss_pred CCC---Ccc-----EEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHH
Q psy4494 123 DKP---NVR-----FVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVF 168 (234)
Q Consensus 123 d~~---~v~-----~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~ 168 (234)
||. .|. +||--..|.|..---|-.||+||.|.+|.+-.|++-+|-.
T Consensus 691 DIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdL 744 (1112)
T PRK12901 691 DIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNL 744 (1112)
T ss_pred CcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHH
Confidence 997 232 7998899999999999999999999999999999987643
No 110
>KOG0922|consensus
Probab=98.35 E-value=2e-06 Score=79.44 Aligned_cols=124 Identities=20% Similarity=0.224 Sum_probs=90.7
Q ss_pred cceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHc------CC--ceeeeccCCCchh---
Q psy4494 46 MENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR------GL--RVSAYHAKLESNV--- 114 (234)
Q Consensus 46 ~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~------~~--~~~~~h~~~~~~~--- 114 (234)
++.+|.-.+.+.-..+.+..+.++-.. .+++-.+||-...++.+.+.+.|.+. +. -+.++||+++.++
T Consensus 229 Vei~y~~~p~~dYv~a~~~tv~~Ih~~-E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~r 307 (674)
T KOG0922|consen 229 VEILYLKEPTADYVDAALITVIQIHLT-EPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSR 307 (674)
T ss_pred eeEEeccCCchhhHHHHHHHHHHHHcc-CCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhc
Confidence 344554422222222333334444333 46677999999999999999999865 11 2468999999887
Q ss_pred ---------------hhhcccCCCCCCccEEEEeec------------------CCCHhHhhhhhcccccCCCceEEEEE
Q psy4494 115 ---------------SIAFGLGIDKPNVRFVIHHCL------------------SKSMENFYQESGRAGRDGQIAHCILY 161 (234)
Q Consensus 115 ---------------T~~~~~Gid~~~v~~Vi~~~~------------------P~~~~~y~qr~GR~gR~g~~~~~i~~ 161 (234)
|+.+...+-|++|.+||.-|. |-|-.+=.||.|||||.| +|.|+-+
T Consensus 308 vF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRL 386 (674)
T KOG0922|consen 308 VFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRL 386 (674)
T ss_pred cccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEe
Confidence 899999999999999997654 446678899999999986 6899999
Q ss_pred eecccHHHhh
Q psy4494 162 YRLPDVFKLS 171 (234)
Q Consensus 162 ~~~~d~~~~~ 171 (234)
|+..++..+.
T Consensus 387 Yte~~~~~~~ 396 (674)
T KOG0922|consen 387 YTESAYDKMP 396 (674)
T ss_pred eeHHHHhhcc
Confidence 9998886544
No 111
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.34 E-value=1.4e-06 Score=83.81 Aligned_cols=87 Identities=17% Similarity=0.353 Sum_probs=73.2
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh----------------------hhhcccCCCCCCccEEEE
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------------SIAFGLGIDKPNVRFVIH 132 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~----------------------T~~~~~Gid~~~v~~Vi~ 132 (234)
.+.+++|-|||++.|.+++..|+..+..+..+||.+.... |.+...|+|+. .+.+|
T Consensus 439 ~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mI- 516 (733)
T COG1203 439 EGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLI- 516 (733)
T ss_pred cCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeee-
Confidence 4678999999999999999999998878999999998754 88888899987 66655
Q ss_pred eecCCCHhHhhhhhcccccCC--CceEEEEEeec
Q psy4494 133 HCLSKSMENFYQESGRAGRDG--QIAHCILYYRL 164 (234)
Q Consensus 133 ~~~P~~~~~y~qr~GR~gR~g--~~~~~i~~~~~ 164 (234)
.=+..+++.+||.||++|-| ..|..+++...
T Consensus 517 -Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~ 549 (733)
T COG1203 517 -TELAPIDSLIQRAGRVNRHGKKENGKIYVYNDE 549 (733)
T ss_pred -ecCCCHHHHHHHHHHHhhcccccCCceeEeecc
Confidence 44778999999999999998 56776666544
No 112
>KOG0947|consensus
Probab=98.32 E-value=1.3e-06 Score=83.48 Aligned_cols=89 Identities=27% Similarity=0.447 Sum_probs=66.3
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc---------------------------------------eeeeccCCCchh-
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR---------------------------------------VSAYHAKLESNV- 114 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~---------------------------------------~~~~h~~~~~~~- 114 (234)
.--|+||||=|++.|++-+++|....+. +++.|||+-+=-
T Consensus 566 ~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivK 645 (1248)
T KOG0947|consen 566 NLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVK 645 (1248)
T ss_pred ccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHH
Confidence 4568999999999999999999742211 567788876622
Q ss_pred -----------------hhhcccCCCCCCccEEEEeecCC---------CHhHhhhhhcccccCCC--ceEEEEEeec
Q psy4494 115 -----------------SIAFGLGIDKPNVRFVIHHCLSK---------SMENFYQESGRAGRDGQ--IAHCILYYRL 164 (234)
Q Consensus 115 -----------------T~~~~~Gid~~~v~~Vi~~~~P~---------~~~~y~qr~GR~gR~g~--~~~~i~~~~~ 164 (234)
|..++||+|.|. +.||.-.+-+ .+..|.|++|||||-|- .|+.|++-..
T Consensus 646 E~VE~LFqrGlVKVLFATETFAMGVNMPA-RtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 646 EVVELLFQRGLVKVLFATETFAMGVNMPA-RTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred HHHHHHHhcCceEEEeehhhhhhhcCCCc-eeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecC
Confidence 999999999994 5555443332 46699999999999874 5777776544
No 113
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.20 E-value=2.1e-05 Score=67.89 Aligned_cols=98 Identities=15% Similarity=0.288 Sum_probs=68.4
Q ss_pred HHHHHHHhhc-CCCcEEEEecchHHHHHHHHHHHHc-C-CceeeeccCCCchh----------------hhhcccCCCCC
Q psy4494 65 ELADLMSRRF-RNQSGIIYTTSIKECEDLREELRNR-G-LRVSAYHAKLESNV----------------SIAFGLGIDKP 125 (234)
Q Consensus 65 ~l~~~l~~~~-~~~~~iIf~~t~~~~~~l~~~L~~~-~-~~~~~~h~~~~~~~----------------T~~~~~Gid~~ 125 (234)
.|...+.+.. .+.+++||+++++..+.+++.|+.. . .++...|+.-.... |..+.||+-+|
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp 372 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRDGKITLLITTTILERGVTFP 372 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHHHHHcCceEEEEEeehhhcccccc
Confidence 4555555332 4688999999999999999999654 2 34466676543322 99999999999
Q ss_pred CccEEEE-eecC-CCHhHhhhhhcccccC-CCc-eEEEEEe
Q psy4494 126 NVRFVIH-HCLS-KSMENFYQESGRAGRD-GQI-AHCILYY 162 (234)
Q Consensus 126 ~v~~Vi~-~~~P-~~~~~y~qr~GR~gR~-g~~-~~~i~~~ 162 (234)
+|+..|. -.-+ -+-..++|-+||+||. .++ |....|.
T Consensus 373 ~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 373 NVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred cceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 9997653 2211 2566899999999994 444 4444443
No 114
>KOG0923|consensus
Probab=98.16 E-value=3.9e-06 Score=77.63 Aligned_cols=122 Identities=20% Similarity=0.271 Sum_probs=85.7
Q ss_pred CCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHc---------CCceeeeccCCCchh
Q psy4494 44 KSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR---------GLRVSAYHAKLESNV 114 (234)
Q Consensus 44 ~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~ 114 (234)
-.++.+|...+.+.-.+..+..+.++-.. .+.+-.|||..-.++.+.+...|.+. .+-+.++|+.++++.
T Consensus 442 yPVdi~Yt~~PEAdYldAai~tVlqIH~t-qp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPsel 520 (902)
T KOG0923|consen 442 YPVDIFYTKAPEADYLDAAIVTVLQIHLT-QPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSEL 520 (902)
T ss_pred cceeeecccCCchhHHHHHHhhheeeEec-cCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHH
Confidence 34677777644432222222222222111 14566899999888888888888653 455899999998866
Q ss_pred ------------------hhhcccCCCCCCccEEEEeecC------------------CCHhHhhhhhcccccCCCceEE
Q psy4494 115 ------------------SIAFGLGIDKPNVRFVIHHCLS------------------KSMENFYQESGRAGRDGQIAHC 158 (234)
Q Consensus 115 ------------------T~~~~~Gid~~~v~~Vi~~~~P------------------~~~~~y~qr~GR~gR~g~~~~~ 158 (234)
|+.+...+-|++|.+||.-|.- -+-.+-.||+|||||.| +|.|
T Consensus 521 QakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKC 599 (902)
T KOG0923|consen 521 QAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKC 599 (902)
T ss_pred HHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCce
Confidence 9999999999999999976553 23456789999999987 7899
Q ss_pred EEEeecccH
Q psy4494 159 ILYYRLPDV 167 (234)
Q Consensus 159 i~~~~~~d~ 167 (234)
+-+|+.+..
T Consensus 600 fRLYt~~aY 608 (902)
T KOG0923|consen 600 FRLYTAWAY 608 (902)
T ss_pred EEeechhhh
Confidence 999996543
No 115
>KOG0951|consensus
Probab=98.15 E-value=2.1e-05 Score=77.30 Aligned_cols=158 Identities=15% Similarity=0.171 Sum_probs=101.1
Q ss_pred hhccCchh-HHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCCh-HHHHHHHHH-----HHHhhcCCCcEEEEecch
Q psy4494 14 WRTSFYQV-SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQ-KDCLDELAD-----LMSRRFRNQSGIIYTTSI 86 (234)
Q Consensus 14 ~~at~p~~-~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~-~~~~~~l~~-----~l~~~~~~~~~iIf~~t~ 86 (234)
+|||+|+. ++...++.+++.+.+.-..--|-.+. +++.+-..++ ...+..+.+ ++. .....++|||+.++
T Consensus 480 LSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~--qq~Igi~ek~~~~~~qamNe~~yeKVm~-~agk~qVLVFVHsR 556 (1674)
T KOG0951|consen 480 LSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLK--QQYIGITEKKPLKRFQAMNEACYEKVLE-HAGKNQVLVFVHSR 556 (1674)
T ss_pred ecccCCchhhhHHHhccCcccccccCcccCcCCcc--ceEeccccCCchHHHHHHHHHHHHHHHH-hCCCCcEEEEEEec
Confidence 58999996 78888888887665432221222222 3333322211 112333322 232 23447899999999
Q ss_pred HHHHHHHHHHHHc-------------------------------------CCceeeeccCCCchh---------------
Q psy4494 87 KECEDLREELRNR-------------------------------------GLRVSAYHAKLESNV--------------- 114 (234)
Q Consensus 87 ~~~~~l~~~L~~~-------------------------------------~~~~~~~h~~~~~~~--------------- 114 (234)
+++-+.|..++.. ..-.+..|+||+..+
T Consensus 557 kET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqv 636 (1674)
T KOG0951|consen 557 KETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQV 636 (1674)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeE
Confidence 9999999888720 112678899998866
Q ss_pred ---hhhcccCCCCCCccEEEE----eec------CCCHhHhhhhhcccccCC--CceEEEEEeecccHHHhhhhH
Q psy4494 115 ---SIAFGLGIDKPNVRFVIH----HCL------SKSMENFYQESGRAGRDG--QIAHCILYYRLPDVFKLSSMV 174 (234)
Q Consensus 115 ---T~~~~~Gid~~~v~~Vi~----~~~------P~~~~~y~qr~GR~gR~g--~~~~~i~~~~~~d~~~~~~~~ 174 (234)
|-.+++|++.|.=..+|- ||+ +-++-+-+|+.|||||.+ ..|..|++-+..++......+
T Consensus 637 lvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~m 711 (1674)
T KOG0951|consen 637 LVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLM 711 (1674)
T ss_pred EEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhh
Confidence 888899999996555542 443 235779999999999954 456677766666666655544
No 116
>KOG0953|consensus
Probab=98.04 E-value=2.1e-05 Score=71.65 Aligned_cols=99 Identities=20% Similarity=0.275 Sum_probs=76.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCCchh--------------------hhhcccCCCCCCccEEEEe
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLESNV--------------------SIAFGLGIDKPNVRFVIHH 133 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~~~~--------------------T~~~~~Gid~~~v~~Vi~~ 133 (234)
.++-+||- =|++..-.+...+..+|.. +++++|+++++. |+|.|||+|.. |+.||.|
T Consensus 356 k~GDCvV~-FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~ 433 (700)
T KOG0953|consen 356 KPGDCVVA-FSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFY 433 (700)
T ss_pred CCCCeEEE-eehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEe
Confidence 34444443 3577889999999988765 999999999865 99999999987 9999998
Q ss_pred ecC---------CCHhHhhhhhcccccCCC---ceEEEEEeecccHHHhhhhHHh
Q psy4494 134 CLS---------KSMENFYQESGRAGRDGQ---IAHCILYYRLPDVFKLSSMVFD 176 (234)
Q Consensus 134 ~~P---------~~~~~y~qr~GR~gR~g~---~~~~i~~~~~~d~~~~~~~~~~ 176 (234)
++- -+..+..|=+|||||.|. .|.+. -+..+|+..+..+++.
T Consensus 434 sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vT-tl~~eDL~~L~~~l~~ 487 (700)
T KOG0953|consen 434 SLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVT-TLHSEDLKLLKRILKR 487 (700)
T ss_pred ecccCCcccceeccHHHHHHHhhcccccccCCcCceEE-EeeHhhHHHHHHHHhC
Confidence 764 356688999999999764 35444 4556788887777753
No 117
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.04 E-value=4.3e-05 Score=73.50 Aligned_cols=66 Identities=23% Similarity=0.130 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHH-hhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCC-C-chh----------------hhhccc
Q psy4494 60 KDCLDELADLMS-RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL-E-SNV----------------SIAFGL 120 (234)
Q Consensus 60 ~~~~~~l~~~l~-~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~-~-~~~----------------T~~~~~ 120 (234)
.++...+.+-+. ....++|+||-+.|.+..|.++..|...|++...+++.. . ..+ |+.+||
T Consensus 407 ~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~AG~~G~VTIATNMAGR 486 (870)
T CHL00122 407 LSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGRKGSITIATNMAGR 486 (870)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhcCCCCcEEEeccccCC
Confidence 445555555443 233578999999999999999999999999999999863 1 222 999999
Q ss_pred CCCCC
Q psy4494 121 GIDKP 125 (234)
Q Consensus 121 Gid~~ 125 (234)
|.||.
T Consensus 487 GTDI~ 491 (870)
T CHL00122 487 GTDII 491 (870)
T ss_pred CcCee
Confidence 99985
No 118
>KOG0390|consensus
Probab=97.73 E-value=0.00023 Score=67.91 Aligned_cols=104 Identities=24% Similarity=0.151 Sum_probs=79.8
Q ss_pred ChHHHHHHHHHHHHh-hcCCCcEEEEecchHHHHHHHHHHHH-cCCceeeeccCCCchh---------------------
Q psy4494 58 AQKDCLDELADLMSR-RFRNQSGIIYTTSIKECEDLREELRN-RGLRVSAYHAKLESNV--------------------- 114 (234)
Q Consensus 58 ~~~~~~~~l~~~l~~-~~~~~~~iIf~~t~~~~~~l~~~L~~-~~~~~~~~h~~~~~~~--------------------- 114 (234)
....++..|..++.. .....--.|++.+.....++.+.+.. +|..+..+||.++..+
T Consensus 575 ~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlS 654 (776)
T KOG0390|consen 575 SKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLS 654 (776)
T ss_pred hhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEe
Confidence 345566666666521 11222235556666677776666654 4999999999999877
Q ss_pred hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEE
Q psy4494 115 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILY 161 (234)
Q Consensus 115 T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~ 161 (234)
+.|-|.||+.-+...||.||+.+++..=.|.++|+-|+|++-.+.+|
T Consensus 655 sKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 655 SKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred cccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 88899999999999999999999999999999999999987655554
No 119
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.68 E-value=0.00029 Score=68.07 Aligned_cols=67 Identities=19% Similarity=0.174 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHhh-cCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccC-CC-chh----------------hhhcc
Q psy4494 59 QKDCLDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK-LE-SNV----------------SIAFG 119 (234)
Q Consensus 59 ~~~~~~~l~~~l~~~-~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~-~~-~~~----------------T~~~~ 119 (234)
..++...+.+-+.+. ..+.|+||-+.|.+..|.++..|...|++...+++. .. ..+ |+.+|
T Consensus 421 ~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~~GaVTIATNMAG 500 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGRKGAVTIATNMAG 500 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhcCCCCcEEEeccCCC
Confidence 345666666555432 368899999999999999999999999998888886 22 222 88999
Q ss_pred cCCCCC
Q psy4494 120 LGIDKP 125 (234)
Q Consensus 120 ~Gid~~ 125 (234)
||.||.
T Consensus 501 RGTDIk 506 (939)
T PRK12902 501 RGTDII 506 (939)
T ss_pred CCcCEe
Confidence 999985
No 120
>KOG0920|consensus
Probab=97.63 E-value=0.00021 Score=69.41 Aligned_cols=108 Identities=24% Similarity=0.304 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHc-------CCceeeeccCCCchh------------------h
Q psy4494 61 DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-------GLRVSAYHAKLESNV------------------S 115 (234)
Q Consensus 61 ~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~-------~~~~~~~h~~~~~~~------------------T 115 (234)
+.+..+...+-+....+..|||-+...+...+.+.|..+ .+-+.++|+.|+..+ |
T Consensus 398 ~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaT 477 (924)
T KOG0920|consen 398 DLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILAT 477 (924)
T ss_pred HHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhh
Confidence 344455544444445678999999999999999999753 256899999999866 9
Q ss_pred hhcccCCCCCCccEEEEeecCC------------------CHhHhhhhhcccccCCCceEEEEEeecccHHH
Q psy4494 116 IAFGLGIDKPNVRFVIHHCLSK------------------SMENFYQESGRAGRDGQIAHCILYYRLPDVFK 169 (234)
Q Consensus 116 ~~~~~Gid~~~v~~Vi~~~~P~------------------~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~ 169 (234)
+.+...|-|++|-+||..+.-+ +-.+-.||.|||||. ++|.|+-+|+...+..
T Consensus 478 NIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 478 NIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEK 548 (924)
T ss_pred hhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhh
Confidence 9999999999999999875422 223557999999997 4688999998765544
No 121
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.63 E-value=0.00018 Score=68.53 Aligned_cols=76 Identities=24% Similarity=0.299 Sum_probs=62.0
Q ss_pred CCcEEEEecchHHHHHHHHHHHHc-----CCceeeeccCCCchh------------------hhhcccCCCCCCccEEEE
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNR-----GLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIH 132 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~ 132 (234)
.+++||||.+..+|+.+...|... |--+..+.|+-.+.+ .+.+..|||+|.|..+|.
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF 505 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVF 505 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeee
Confidence 578999999999999999999864 222455555544433 566777999999999999
Q ss_pred eecCCCHhHhhhhhccccc
Q psy4494 133 HCLSKSMENFYQESGRAGR 151 (234)
Q Consensus 133 ~~~P~~~~~y~qr~GR~gR 151 (234)
+..=.|...|.|++||+-|
T Consensus 506 ~r~VrSktkF~QMvGRGTR 524 (875)
T COG4096 506 DRKVRSKTKFKQMVGRGTR 524 (875)
T ss_pred hhhhhhHHHHHHHhcCccc
Confidence 9888999999999999988
No 122
>KOG0924|consensus
Probab=97.61 E-value=0.00024 Score=66.37 Aligned_cols=89 Identities=24% Similarity=0.353 Sum_probs=71.0
Q ss_pred CCcEEEEecchHHHHHHHHHHHHc----------CCceeeeccCCCchh------------------hhhcccCCCCCCc
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNR----------GLRVSAYHAKLESNV------------------SIAFGLGIDKPNV 127 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~----------~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v 127 (234)
++-.+||..-.+..|.....+.+. ++.+.++++.++..- |+.+...+-+|+|
T Consensus 563 ~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI 642 (1042)
T KOG0924|consen 563 PGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGI 642 (1042)
T ss_pred CCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecce
Confidence 456799998888777766666532 567899999988654 9999999999999
Q ss_pred cEEEEeec------------------CCCHhHhhhhhcccccCCCceEEEEEeecc
Q psy4494 128 RFVIHHCL------------------SKSMENFYQESGRAGRDGQIAHCILYYRLP 165 (234)
Q Consensus 128 ~~Vi~~~~------------------P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~ 165 (234)
.+||..+. |-+-.+-.||.|||||.| +|.|+-+|+..
T Consensus 643 ~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 643 RYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred EEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 99998754 445557789999999987 78999999873
No 123
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.41 E-value=0.00032 Score=68.88 Aligned_cols=89 Identities=30% Similarity=0.435 Sum_probs=67.4
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc----------------------------CCc-------------eeeeccCCCch
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR----------------------------GLR-------------VSAYHAKLESN 113 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~----------------------------~~~-------------~~~~h~~~~~~ 113 (234)
+.-++|+|+=|++.|+..+..+... +++ +.+.|++|-+.
T Consensus 378 ~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~ 457 (1041)
T COG4581 378 NLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPA 457 (1041)
T ss_pred cCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchH
Confidence 4568999999999999999887511 121 44677887775
Q ss_pred h------------------hhhcccCCCCCCccEEEEeecC---------CCHhHhhhhhcccccCCCc--eEEEEEeec
Q psy4494 114 V------------------SIAFGLGIDKPNVRFVIHHCLS---------KSMENFYQESGRAGRDGQI--AHCILYYRL 164 (234)
Q Consensus 114 ~------------------T~~~~~Gid~~~v~~Vi~~~~P---------~~~~~y~qr~GR~gR~g~~--~~~i~~~~~ 164 (234)
. |..+++|+|.| ++.|+...+- -+...|.|..|||||.|.. |++|+...+
T Consensus 458 ~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP-artvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 458 IKELVEELFQEGLVKVVFATETFAIGINMP-ARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred HHHHHHHHHhccceeEEeehhhhhhhcCCc-ccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 4 99999999999 6666665442 3677999999999998754 777777444
No 124
>KOG0384|consensus
Probab=97.37 E-value=0.00077 Score=66.50 Aligned_cols=91 Identities=23% Similarity=0.220 Sum_probs=78.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh---------------------hhhcccCCCCCCccEEEEe
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---------------------SIAFGLGIDKPNVRFVIHH 133 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~---------------------T~~~~~Gid~~~v~~Vi~~ 133 (234)
.+.++|||..-.+..+-|+++|..++++..-+-|.+..+. |-|-|.|||....+.||.|
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIF 777 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIF 777 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEe
Confidence 3679999999999999999999999999888888876543 9999999999999999999
Q ss_pred ecCCCHhHhhhhhcccccCCCceE--EEEEeecc
Q psy4494 134 CLSKSMENFYQESGRAGRDGQIAH--CILYYRLP 165 (234)
Q Consensus 134 ~~P~~~~~y~qr~GR~gR~g~~~~--~i~~~~~~ 165 (234)
|--+++-.=+|-..||-|-|++.. .+-|++.+
T Consensus 778 DSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 778 DSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred CCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 999999999999999999998644 34445544
No 125
>KOG0387|consensus
Probab=97.26 E-value=0.0011 Score=62.88 Aligned_cols=100 Identities=20% Similarity=0.198 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhhc-CCCcEEEEecchHHHHHHHHHHH-HcCCceeeeccCCCchh--------------------hhhcc
Q psy4494 62 CLDELADLMSRRF-RNQSGIIYTTSIKECEDLREELR-NRGLRVSAYHAKLESNV--------------------SIAFG 119 (234)
Q Consensus 62 ~~~~l~~~l~~~~-~~~~~iIf~~t~~~~~~l~~~L~-~~~~~~~~~h~~~~~~~--------------------T~~~~ 119 (234)
++..+.+++.... .+.++|+|..|+....-+-..|. ..|+...-+-|..+... |-+-|
T Consensus 531 Km~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGG 610 (923)
T KOG0387|consen 531 KMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGG 610 (923)
T ss_pred hHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccc
Confidence 5555666665332 46799999999999999999998 57888888888766544 88899
Q ss_pred cCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEE
Q psy4494 120 LGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILY 161 (234)
Q Consensus 120 ~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~ 161 (234)
.|++.-+.+.||.||+-+++..=.|-.-||-|-|++-..++|
T Consensus 611 LGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 611 LGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred cccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 999999999999999999999999999999999987544443
No 126
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.18 E-value=0.00071 Score=64.99 Aligned_cols=108 Identities=26% Similarity=0.264 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHH-hhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh----------------hhhcccCC
Q psy4494 60 KDCLDELADLMS-RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLGI 122 (234)
Q Consensus 60 ~~~~~~l~~~l~-~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~----------------T~~~~~Gi 122 (234)
.+|...+++-+. ....++|+||-+.+.+..|.+++.|++.|++-..+.+....++ |+-+|||-
T Consensus 412 ~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~AG~~gaVTiATNMAGRGT 491 (822)
T COG0653 412 EEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEIIAQAGQPGAVTIATNMAGRGT 491 (822)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHHHHhhcCCCCccccccccccCCc
Confidence 456666655554 3346899999999999999999999999998766666555444 88899999
Q ss_pred CCCCcc-----------EEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccH
Q psy4494 123 DKPNVR-----------FVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDV 167 (234)
Q Consensus 123 d~~~v~-----------~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~ 167 (234)
|+.--. +||--.--++-.-=-|-.||+||.|.+|.+..|++-.|.
T Consensus 492 DIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD~ 547 (822)
T COG0653 492 DIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDD 547 (822)
T ss_pred ccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHHH
Confidence 986222 355443333433335888999999999999999887654
No 127
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.11 E-value=0.0015 Score=63.72 Aligned_cols=72 Identities=24% Similarity=0.480 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhcCCCcEEEEecc---hHHHHHHHHHHHHcCCceeeeccCCCchh-----------------hhhcccCC
Q psy4494 63 LDELADLMSRRFRNQSGIIYTTS---IKECEDLREELRNRGLRVSAYHAKLESNV-----------------SIAFGLGI 122 (234)
Q Consensus 63 ~~~l~~~l~~~~~~~~~iIf~~t---~~~~~~l~~~L~~~~~~~~~~h~~~~~~~-----------------T~~~~~Gi 122 (234)
.+.+.++++. -+.-+|||++. ++.+++++++|+++|+.+..+|+.-...- ..++-||+
T Consensus 324 ~e~~~elvk~--lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~~~~~le~F~~GeidvLVGvAsyYG~lVRGl 401 (1187)
T COG1110 324 LEKVVELVKK--LGDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAEKEEALEDFEEGEVDVLVGVASYYGVLVRGL 401 (1187)
T ss_pred HHHHHHHHHH--hCCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeeccchhhhhhhccCceeEEEEecccccceeecC
Confidence 4444455543 24458999999 99999999999999999999998642111 67788999
Q ss_pred CCC-CccEEEEeecC
Q psy4494 123 DKP-NVRFVIHHCLS 136 (234)
Q Consensus 123 d~~-~v~~Vi~~~~P 136 (234)
|.| .|+++|.||.|
T Consensus 402 DLP~rirYaIF~GvP 416 (1187)
T COG1110 402 DLPHRIRYAVFYGVP 416 (1187)
T ss_pred CchhheeEEEEecCC
Confidence 999 56999999999
No 128
>KOG0385|consensus
Probab=97.08 E-value=0.0051 Score=58.45 Aligned_cols=103 Identities=19% Similarity=0.125 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh---------------------hhhccc
Q psy4494 62 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---------------------SIAFGL 120 (234)
Q Consensus 62 ~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~---------------------T~~~~~ 120 (234)
.++.|+.-|++ .+.+++||..-....+-+-++..-+++...-+-|+++-++ |-|-|.
T Consensus 475 vLDkLL~~Lk~--~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGL 552 (971)
T KOG0385|consen 475 VLDKLLPKLKE--QGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGL 552 (971)
T ss_pred hHHHHHHHHHh--CCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccc
Confidence 34444444443 5789999998888888888888888999888999988766 999999
Q ss_pred CCCCCCccEEEEeecCCCHhHhhhhhcccccCCCce--EEEEEeeccc
Q psy4494 121 GIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIA--HCILYYRLPD 166 (234)
Q Consensus 121 Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~--~~i~~~~~~d 166 (234)
|||....+.||.||.-+++-.=+|..-||-|-|+.. .++-+++.+.
T Consensus 553 GINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 553 GINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred ccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 999999999999999999999999999999988764 4444455543
No 129
>KOG0926|consensus
Probab=96.97 E-value=0.0035 Score=59.82 Aligned_cols=49 Identities=27% Similarity=0.474 Sum_probs=40.2
Q ss_pred hhhcccCCCCCCccEEEEeecCC--------CH----------hHhhhhhcccccCCCceEEEEEeec
Q psy4494 115 SIAFGLGIDKPNVRFVIHHCLSK--------SM----------ENFYQESGRAGRDGQIAHCILYYRL 164 (234)
Q Consensus 115 T~~~~~Gid~~~v~~Vi~~~~P~--------~~----------~~y~qr~GR~gR~g~~~~~i~~~~~ 164 (234)
|+++...+-||+|++||..|.-+ .+ .+=-||+|||||.| +|+|+-+|+.
T Consensus 637 TNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 637 TNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred ccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 99999999999999999876543 12 24469999999987 6899999986
No 130
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.89 E-value=0.01 Score=58.05 Aligned_cols=83 Identities=19% Similarity=0.115 Sum_probs=73.8
Q ss_pred cEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh--------------------hhhcccCCCCCCccEEEEeecCC
Q psy4494 78 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------------SIAFGLGIDKPNVRFVIHHCLSK 137 (234)
Q Consensus 78 ~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~--------------------T~~~~~Gid~~~v~~Vi~~~~P~ 137 (234)
+++||.......+-+...|...++....++|+++.+. +.+.|.|++...-++||+||..+
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~w 792 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWW 792 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecccc
Confidence 8999999999999999999999988999999886443 67999999999999999999999
Q ss_pred CHhHhhhhhcccccCCCceEEEE
Q psy4494 138 SMENFYQESGRAGRDGQIAHCIL 160 (234)
Q Consensus 138 ~~~~y~qr~GR~gR~g~~~~~i~ 160 (234)
++....|...|+-|.|+....-+
T Consensus 793 np~~~~Qa~dRa~RigQ~~~v~v 815 (866)
T COG0553 793 NPAVELQAIDRAHRIGQKRPVKV 815 (866)
T ss_pred ChHHHHHHHHHHHHhcCcceeEE
Confidence 99999999999999887654433
No 131
>KOG0925|consensus
Probab=96.38 E-value=0.016 Score=52.62 Aligned_cols=91 Identities=20% Similarity=0.278 Sum_probs=67.6
Q ss_pred CCcEEEEecchHHHHHHHHHHHHc---------CCceeeeccCCCchh-------------------hhhcccCCCCCCc
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNR---------GLRVSAYHAKLESNV-------------------SIAFGLGIDKPNV 127 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~-------------------T~~~~~Gid~~~v 127 (234)
++-.+||....++.+...+.+... .+.+.++|-...+.- |+.+...+-+++|
T Consensus 253 ~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLyP~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgi 332 (699)
T KOG0925|consen 253 PGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLYPAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGI 332 (699)
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecCchhhccccCCCCcccCCCccceEEEEecchheeeeeccE
Confidence 566899999999988888877632 345777774333221 7777788899999
Q ss_pred cEEEEeec------------------CCCHhHhhhhhcccccCCCceEEEEEeecccH
Q psy4494 128 RFVIHHCL------------------SKSMENFYQESGRAGRDGQIAHCILYYRLPDV 167 (234)
Q Consensus 128 ~~Vi~~~~------------------P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~ 167 (234)
.+||.-|+ |-|-.+--||.||+||. ++|.|.-+|+.+-+
T Consensus 333 v~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~~~ 389 (699)
T KOG0925|consen 333 VFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 389 (699)
T ss_pred EEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHHhh
Confidence 99997665 44555778899999886 57889999987544
No 132
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=96.32 E-value=0.047 Score=53.90 Aligned_cols=90 Identities=18% Similarity=0.115 Sum_probs=59.5
Q ss_pred CCCcEEEEecchHHHHHHHHHHHH----cCCceeeeccCCCchh---------------hhhcccCCCCCCcc--EEEEe
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRN----RGLRVSAYHAKLESNV---------------SIAFGLGIDKPNVR--FVIHH 133 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~---------------T~~~~~Gid~~~v~--~Vi~~ 133 (234)
.+++++||++|.+..+.++..|.. .++.+..-+.+.+... |+.+.+|||+++.. .||..
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~ 752 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGINGSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIP 752 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCCccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEe
Confidence 457899999999999999999975 2444322111111211 88999999999876 45666
Q ss_pred ecCC----C--------------------------HhHhhhhhcccccCCCceEEEEEeec
Q psy4494 134 CLSK----S--------------------------MENFYQESGRAGRDGQIAHCILYYRL 164 (234)
Q Consensus 134 ~~P~----~--------------------------~~~y~qr~GR~gR~g~~~~~i~~~~~ 164 (234)
++|- + +..+.|-+||.=|..+..-++++.+.
T Consensus 753 ~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 753 RLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 6662 1 22456788999887655334555544
No 133
>KOG1000|consensus
Probab=96.28 E-value=0.015 Score=52.91 Aligned_cols=83 Identities=17% Similarity=0.171 Sum_probs=73.5
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh--------------------hhhcccCCCCCCccEEEEee
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------------SIAFGLGIDKPNVRFVIHHC 134 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~--------------------T~~~~~Gid~~~v~~Vi~~~ 134 (234)
++.+.+||+......+.+...+.++++...-+.|..++.. -.|.|+|+++...+.||...
T Consensus 491 ~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaE 570 (689)
T KOG1000|consen 491 PPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAE 570 (689)
T ss_pred CCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEE
Confidence 4668999999999999999999999998888888887765 56889999999999999999
Q ss_pred cCCCHhHhhhhhcccccCCCceE
Q psy4494 135 LSKSMENFYQESGRAGRDGQIAH 157 (234)
Q Consensus 135 ~P~~~~~y~qr~GR~gR~g~~~~ 157 (234)
+|+++.-++|--.|+-|-|+++.
T Consensus 571 L~wnPgvLlQAEDRaHRiGQkss 593 (689)
T KOG1000|consen 571 LHWNPGVLLQAEDRAHRIGQKSS 593 (689)
T ss_pred ecCCCceEEechhhhhhccccce
Confidence 99999999998888888887643
No 134
>COG4889 Predicted helicase [General function prediction only]
Probab=96.27 E-value=0.0019 Score=62.16 Aligned_cols=87 Identities=23% Similarity=0.353 Sum_probs=65.2
Q ss_pred CcEEEEecchHHHHHHHHHHHH-------------cCCc--eeeeccCCCchh---------------------hhhccc
Q psy4494 77 QSGIIYTTSIKECEDLREELRN-------------RGLR--VSAYHAKLESNV---------------------SIAFGL 120 (234)
Q Consensus 77 ~~~iIf~~t~~~~~~l~~~L~~-------------~~~~--~~~~h~~~~~~~---------------------T~~~~~ 120 (234)
+++|-||.+++....+++.+.. .++. +.+..|.|+..+ --.++.
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 5789999999988888876642 2344 444446666543 334677
Q ss_pred CCCCCCccEEEEeecCCCHhHhhhhhccccc--CCC-ceEEEEEee
Q psy4494 121 GIDKPNVRFVIHHCLSKSMENFYQESGRAGR--DGQ-IAHCILYYR 163 (234)
Q Consensus 121 Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR--~g~-~~~~i~~~~ 163 (234)
|+|+|..+.||.|++-.++.+.+|-+||.-| -|+ -|..|+-+.
T Consensus 541 GVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIa 586 (1518)
T COG4889 541 GVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIA 586 (1518)
T ss_pred CCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEec
Confidence 9999999999999999999999999999999 243 376666553
No 135
>KOG0949|consensus
Probab=96.16 E-value=0.0059 Score=59.46 Aligned_cols=58 Identities=29% Similarity=0.461 Sum_probs=43.5
Q ss_pred eeeeccCCCchh------------------hhhcccCCCCCCccEEEEeec--CCCHhHhhhhhcccccCCC--ceEEEE
Q psy4494 103 VSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCL--SKSMENFYQESGRAGRDGQ--IAHCIL 160 (234)
Q Consensus 103 ~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~--P~~~~~y~qr~GR~gR~g~--~~~~i~ 160 (234)
+.+.|++++..+ |..++.|||.| .+.|+..+- --++-.|-|++|||||.|= -|..+.
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMP-CrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~F 1043 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMP-CRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVF 1043 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCC-ceeEEEeccccccCchhHHhhhccccccccccccceEE
Confidence 567788888766 99999999999 566665433 2367799999999999763 455554
Q ss_pred E
Q psy4494 161 Y 161 (234)
Q Consensus 161 ~ 161 (234)
+
T Consensus 1044 m 1044 (1330)
T KOG0949|consen 1044 M 1044 (1330)
T ss_pred E
Confidence 4
No 136
>KOG0391|consensus
Probab=96.05 E-value=0.057 Score=53.92 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=78.9
Q ss_pred ChHHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh--------------------hhh
Q psy4494 58 AQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------------SIA 117 (234)
Q Consensus 58 ~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~--------------------T~~ 117 (234)
.+-+.+..|++-|+. .+.++|||+.-.+..+-|-.+|..+|+.-.-+.|....++ |-.
T Consensus 1260 GKLQtLAiLLqQLk~--eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrS 1337 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKS--EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRS 1337 (1958)
T ss_pred chHHHHHHHHHHHHh--cCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccC
Confidence 344556666665553 5789999999999999999999999998888888877665 777
Q ss_pred cccCCCCCCccEEEEeecCCCHh------HhhhhhcccccCCCceEEEEEeeccc
Q psy4494 118 FGLGIDKPNVRFVIHHCLSKSME------NFYQESGRAGRDGQIAHCILYYRLPD 166 (234)
Q Consensus 118 ~~~Gid~~~v~~Vi~~~~P~~~~------~y~qr~GR~gR~g~~~~~i~~~~~~d 166 (234)
-|.|||.-+.+.||.||--+++. +.-||||++ | .-+.+-|++...
T Consensus 1338 ggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt-R---DVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1338 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT-R---DVHIYRLISERT 1388 (1958)
T ss_pred CccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc-c---ceEEEEeeccch
Confidence 78899999999999999988755 666777776 3 344555555543
No 137
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.04 E-value=0.027 Score=44.36 Aligned_cols=89 Identities=22% Similarity=0.235 Sum_probs=51.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcC----CceeeeccCCCchh---------------hh--hcccCCCCCC--ccEEE
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRG----LRVSAYHAKLESNV---------------SI--AFGLGIDKPN--VRFVI 131 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~----~~~~~~h~~~~~~~---------------T~--~~~~Gid~~~--v~~Vi 131 (234)
.++.++||++|.+..+.+.+.+.... +.+.. .++.+.+. +. .+..|||+++ .+.||
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~-q~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFV-QGSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEE-STCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeee-cCcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 46789999999999999999998653 22222 22222211 33 6788999995 77899
Q ss_pred EeecCC----CH--------------------------hHhhhhhcccccCCCceEEEEEeec
Q psy4494 132 HHCLSK----SM--------------------------ENFYQESGRAGRDGQIAHCILYYRL 164 (234)
Q Consensus 132 ~~~~P~----~~--------------------------~~y~qr~GR~gR~g~~~~~i~~~~~ 164 (234)
..++|- ++ ....|-+||+=|..+.--++++.+.
T Consensus 87 i~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 87 IVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 998883 21 1235678999997766445555543
No 138
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=95.99 E-value=0.13 Score=46.75 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=79.3
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hh--hcccCCCCCCccEEEEee
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SI--AFGLGIDKPNVRFVIHHC 134 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~--~~~~Gid~~~v~~Vi~~~ 134 (234)
..+.+|||++|--+=-+|-++|++.++....+|--.+..+ |. -+=+=..+.+|++||.|+
T Consensus 299 ~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~ 378 (442)
T PF06862_consen 299 KMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYG 378 (442)
T ss_pred CCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEEC
Confidence 4567999999999999999999998888777776666555 11 112245678899999999
Q ss_pred cCCCHhHhhhhhcccccCC------CceEEEEEeecccHHHhhhhHHhhh
Q psy4494 135 LSKSMENFYQESGRAGRDG------QIAHCILYYRLPDVFKLSSMVFDQQ 178 (234)
Q Consensus 135 ~P~~~~~y~qr~GR~gR~g------~~~~~i~~~~~~d~~~~~~~~~~~~ 178 (234)
+|..+.=|..-+.-.+... ....+.++|+..|...+..++..++
T Consensus 379 ~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt~r 428 (442)
T PF06862_consen 379 PPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGTER 428 (442)
T ss_pred CCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCHHH
Confidence 9999887766665444433 3689999999999998888875543
No 139
>KOG0388|consensus
Probab=95.87 E-value=0.055 Score=51.42 Aligned_cols=82 Identities=22% Similarity=0.149 Sum_probs=72.2
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh-------------------hhhcccCCCCCCccEEEEeec
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------------------SIAFGLGIDKPNVRFVIHHCL 135 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~-------------------T~~~~~Gid~~~v~~Vi~~~~ 135 (234)
.+.++++|+.-.+..+-+-++|...+++-.-+.|+..... |-|-|.||+....+.||.||.
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdS 1122 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDS 1122 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecC
Confidence 4678999999999999999999999988888888765544 889999999999999999999
Q ss_pred CCCHhHhhhhhcccccCCCce
Q psy4494 136 SKSMENFYQESGRAGRDGQIA 156 (234)
Q Consensus 136 P~~~~~y~qr~GR~gR~g~~~ 156 (234)
-+++.-=.|...||-|-|+.-
T Consensus 1123 DWNPT~D~QAMDRAHRLGQTr 1143 (1185)
T KOG0388|consen 1123 DWNPTADQQAMDRAHRLGQTR 1143 (1185)
T ss_pred CCCcchhhHHHHHHHhccCcc
Confidence 999999999999999988653
No 140
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=95.61 E-value=0.11 Score=49.93 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=55.6
Q ss_pred CCcEEEEecchHHHHHHHHHHHHc-----CCceeeeccCCCch------------------------h------------
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNR-----GLRVSAYHAKLESN------------------------V------------ 114 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~------------------------~------------ 114 (234)
..+++|||.++..|..+.+.|.+. +..+..+++..+.+ .
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 478999999999999999998654 23455555543221 0
Q ss_pred ----hhhcccCCCCCCccEEEEeecCCCHhHhhhhhccccc
Q psy4494 115 ----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGR 151 (234)
Q Consensus 115 ----T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR 151 (234)
++-+..|.|.|.+..++... |-..-.++|.+||+-|
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldK-plk~h~LlQai~R~nR 633 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDK-PLKYHGLLQAIARTNR 633 (667)
T ss_pred EEEEEcccccccCCCccceEEEec-cccccHHHHHHHHhcc
Confidence 66667799999998877554 5444568999999999
No 141
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=95.57 E-value=0.38 Score=46.52 Aligned_cols=60 Identities=15% Similarity=0.219 Sum_probs=43.4
Q ss_pred CCcEEEEecchHHHHHHHHHHHHc-CCceeeeccCCCchh-------------------hhhcccCCCCCC--ccEEEEe
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESNV-------------------SIAFGLGIDKPN--VRFVIHH 133 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~-------------------T~~~~~Gid~~~--v~~Vi~~ 133 (234)
++.++||++|.+..+.++..|... +.+ ...+|..+... |..+..|||+|+ .+.||..
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~ 612 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIIT 612 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCchHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEE
Confidence 445899999999999999999743 333 33355433211 667778999986 6889888
Q ss_pred ecC
Q psy4494 134 CLS 136 (234)
Q Consensus 134 ~~P 136 (234)
.+|
T Consensus 613 kLP 615 (697)
T PRK11747 613 KIP 615 (697)
T ss_pred cCC
Confidence 777
No 142
>KOG0389|consensus
Probab=95.57 E-value=0.11 Score=49.81 Aligned_cols=113 Identities=17% Similarity=0.117 Sum_probs=86.6
Q ss_pred CCChHHHHHHHHHHHHhhc-CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh--------------------
Q psy4494 56 PAAQKDCLDELADLMSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------------------- 114 (234)
Q Consensus 56 ~~~~~~~~~~l~~~l~~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~-------------------- 114 (234)
+.-...|+..|..+|.+-- .+.+++||..-....+-|-..|...++.-.-+-|...-..
T Consensus 756 ~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLS 835 (941)
T KOG0389|consen 756 LWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLS 835 (941)
T ss_pred hhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEe
Confidence 3334456666666665321 4689999998888888888889888888888877765443
Q ss_pred hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCC--ceEEEEEeecccHH
Q psy4494 115 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQ--IAHCILYYRLPDVF 168 (234)
Q Consensus 115 T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~--~~~~i~~~~~~d~~ 168 (234)
|.|-|.||+....+.||.||+--++-+=.|.--|+-|.|+ +-+.+-+++...+.
T Consensus 836 TKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 836 TKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred eccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 9999999999999999999998887777888888888775 56677777776544
No 143
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.98 E-value=0.18 Score=48.60 Aligned_cols=76 Identities=25% Similarity=0.330 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHc--CCceeeeccCCCchh--------------------hhhcccCCCCCCccEEEEeecCC--------
Q psy4494 88 ECEDLREELRNR--GLRVSAYHAKLESNV--------------------SIAFGLGIDKPNVRFVIHHCLSK-------- 137 (234)
Q Consensus 88 ~~~~l~~~L~~~--~~~~~~~h~~~~~~~--------------------T~~~~~Gid~~~v~~Vi~~~~P~-------- 137 (234)
-+|++.+.|+.. +.++..+-++.+... |-.+.-|.|+|+|..|...|.-.
T Consensus 492 GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfR 571 (730)
T COG1198 492 GTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFR 571 (730)
T ss_pred cHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcc
Confidence 356666666554 556666666655533 77778899999999987765432
Q ss_pred C----HhHhhhhhcccccCCCceEEEEEee
Q psy4494 138 S----MENFYQESGRAGRDGQIAHCILYYR 163 (234)
Q Consensus 138 ~----~~~y~qr~GR~gR~g~~~~~i~~~~ 163 (234)
. .-.+.|=.|||||.+.+|..++=--
T Consensus 572 A~Er~fqll~QvaGRAgR~~~~G~VvIQT~ 601 (730)
T COG1198 572 ASERTFQLLMQVAGRAGRAGKPGEVVIQTY 601 (730)
T ss_pred hHHHHHHHHHHHHhhhccCCCCCeEEEEeC
Confidence 2 3367889999999988877666443
No 144
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=94.56 E-value=0.005 Score=57.53 Aligned_cols=36 Identities=53% Similarity=0.869 Sum_probs=33.2
Q ss_pred HHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCC
Q psy4494 22 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPA 57 (234)
Q Consensus 22 ~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~ 57 (234)
+++|+||||+|+||+++|..+|.++..||+..++.+
T Consensus 287 T~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAG 322 (590)
T COG0514 287 TNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAG 322 (590)
T ss_pred eccccCccCCCCceEEEEecCCCCHHHHHHHHhhcc
Confidence 689999999999999999999999999999888653
No 145
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=94.52 E-value=0.5 Score=45.20 Aligned_cols=97 Identities=18% Similarity=0.156 Sum_probs=66.7
Q ss_pred HHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCC-ceeeeccCCCchh----------------hhhcccCCCCC
Q psy4494 63 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKLESNV----------------SIAFGLGIDKP 125 (234)
Q Consensus 63 ~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~h~~~~~~~----------------T~~~~~Gid~~ 125 (234)
...+..++.. .+++++||++|.+..+.+++.+..... .....+|..+..+ +..+..|+|++
T Consensus 468 ~~~i~~~~~~--~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~ 545 (654)
T COG1199 468 AAYLREILKA--SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDEREELLEKFKASGEGLILVGGGSFWEGVDFP 545 (654)
T ss_pred HHHHHHHHhh--cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcHHHHHHHHHHhcCCeEEEeeccccCcccCC
Confidence 3344444432 456899999999999999999987664 2445566655543 66677899999
Q ss_pred Cc--cEEEEeecCCC------------------------------HhHhhhhhcccccCCCc-eEEEEE
Q psy4494 126 NV--RFVIHHCLSKS------------------------------MENFYQESGRAGRDGQI-AHCILY 161 (234)
Q Consensus 126 ~v--~~Vi~~~~P~~------------------------------~~~y~qr~GR~gR~g~~-~~~i~~ 161 (234)
+= +.||..++|-- +....|-+||.=|.-.. |..+++
T Consensus 546 g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 546 GDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred CCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 54 67888877632 34668889999885443 544443
No 146
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=94.38 E-value=1.3 Score=44.29 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=42.7
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcC----CceeeeccC--CCchh---------------hhhcccCCCCCC--ccEEE
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRG----LRVSAYHAK--LESNV---------------SIAFGLGIDKPN--VRFVI 131 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~----~~~~~~h~~--~~~~~---------------T~~~~~Gid~~~--v~~Vi 131 (234)
.+++++|+++|.+..+.+++.|.... +.+.. .|. .+... |..+..|||+|+ .+.||
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~-Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~vi 829 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLA-QGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLV 829 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEe-cCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEE
Confidence 45789999999999999999997542 22222 221 12211 777888999996 47788
Q ss_pred EeecC
Q psy4494 132 HHCLS 136 (234)
Q Consensus 132 ~~~~P 136 (234)
...+|
T Consensus 830 I~kLP 834 (928)
T PRK08074 830 IVRLP 834 (928)
T ss_pred EecCC
Confidence 87766
No 147
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=93.75 E-value=1.1 Score=44.11 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHH
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRN 98 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~ 98 (234)
.+.++||||+..+.|..|.++|..
T Consensus 294 ~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 294 GPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred CCCcEEEEEcchHHHHHHHHHHHh
Confidence 356799999999999999998865
No 148
>KOG0351|consensus
Probab=93.71 E-value=0.015 Score=57.30 Aligned_cols=35 Identities=57% Similarity=1.000 Sum_probs=33.5
Q ss_pred HHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcC
Q psy4494 22 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKP 56 (234)
Q Consensus 22 ~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~ 56 (234)
+++|+||||+|+||+++|+..|++++.|||..++.
T Consensus 542 TVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRA 576 (941)
T KOG0351|consen 542 TVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRA 576 (941)
T ss_pred EeeccCCCCCCceeEEEECCCchhHHHHHHhcccc
Confidence 78999999999999999999999999999998875
No 149
>KOG0353|consensus
Probab=93.20 E-value=0.014 Score=51.46 Aligned_cols=31 Identities=71% Similarity=1.307 Sum_probs=29.1
Q ss_pred HHHHhhCCCCCcEEEEEeeccCCCcceEEEE
Q psy4494 22 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQV 52 (234)
Q Consensus 22 ~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v 52 (234)
+++|+||+|+|+||+++|+.++++++.||+.
T Consensus 374 tvafgmgidkpdvrfvihhsl~ksienyyqa 404 (695)
T KOG0353|consen 374 TVAFGMGIDKPDVRFVIHHSLPKSIENYYQA 404 (695)
T ss_pred EeeecccCCCCCeeEEEecccchhHHHHHHH
Confidence 5789999999999999999999999999974
No 150
>KOG0392|consensus
Probab=92.98 E-value=0.37 Score=48.58 Aligned_cols=97 Identities=18% Similarity=0.118 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhhc---------------CCCcEEEEecchHHHHHHHHHHHHcCCc-ee--eeccCCCchh--------
Q psy4494 61 DCLDELADLMSRRF---------------RNQSGIIYTTSIKECEDLREELRNRGLR-VS--AYHAKLESNV-------- 114 (234)
Q Consensus 61 ~~~~~l~~~l~~~~---------------~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~--~~h~~~~~~~-------- 114 (234)
-|+..|.+++.+-. ...+++|||.-+...+-+-+-|.+.-.+ +. .+-|+.++.+
T Consensus 1310 pKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~F 1389 (1549)
T KOG0392|consen 1310 PKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERF 1389 (1549)
T ss_pred hhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHh
Confidence 46777777776311 2358999999999999999888765333 33 5668887766
Q ss_pred ------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceE
Q psy4494 115 ------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAH 157 (234)
Q Consensus 115 ------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~ 157 (234)
|-+-|.|+|..+.+.||.++=-|++..=+|-+-||-|-|++-+
T Consensus 1390 N~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrv 1444 (1549)
T KOG0392|consen 1390 NEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRV 1444 (1549)
T ss_pred cCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCcee
Confidence 7788999999999999999999999999999999999998754
No 151
>KOG0386|consensus
Probab=92.79 E-value=0.51 Score=46.58 Aligned_cols=90 Identities=17% Similarity=0.141 Sum_probs=74.8
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh---------------------hhhcccCCCCCCccEEEEe
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---------------------SIAFGLGIDKPNVRFVIHH 133 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~---------------------T~~~~~Gid~~~v~~Vi~~ 133 (234)
.+.+++.|+.-.....-+..+|.-.++.-.-+-|....++ |.|-|.|+|....+.||.|
T Consensus 725 tgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviif 804 (1157)
T KOG0386|consen 725 TGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIF 804 (1157)
T ss_pred cCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEe
Confidence 4778999998888888888889877777666666655544 8899999999999999999
Q ss_pred ecCCCHhHhhhhhcccccCCCceEEEEEeec
Q psy4494 134 CLSKSMENFYQESGRAGRDGQIAHCILYYRL 164 (234)
Q Consensus 134 ~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~ 164 (234)
|.-+++....|+--||-|-|+...+-++.--
T Consensus 805 dsdwnp~~d~qaqdrahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 805 DSDWNPHQDLQAQDRAHRIGQKKEVRVLRLI 835 (1157)
T ss_pred cCCCCchhHHHHHHHHHHhhchhheeeeeee
Confidence 9999999999999999999887666555543
No 152
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.46 E-value=3.5 Score=39.97 Aligned_cols=63 Identities=16% Similarity=0.107 Sum_probs=41.8
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCC--------ceeeeccCC-Cchh-------------------h--hhcccCCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGL--------RVSAYHAKL-ESNV-------------------S--IAFGLGIDK 124 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~--------~~~~~h~~~-~~~~-------------------T--~~~~~Gid~ 124 (234)
.++.++||++|....+.+.+.+...++ .+..=..++ +.+. + ..++.|||+
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf 600 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDF 600 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCcccc
Confidence 357799999999999999998875432 111111111 1111 1 345679999
Q ss_pred CC--ccEEEEeecCC
Q psy4494 125 PN--VRFVIHHCLSK 137 (234)
Q Consensus 125 ~~--v~~Vi~~~~P~ 137 (234)
++ .+.||..++|-
T Consensus 601 ~~~~~r~ViivGlPf 615 (705)
T TIGR00604 601 CDDLGRAVIMVGIPY 615 (705)
T ss_pred CCCCCcEEEEEccCC
Confidence 96 68999999985
No 153
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=92.24 E-value=2 Score=42.39 Aligned_cols=88 Identities=15% Similarity=0.060 Sum_probs=58.7
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeecc-CCCchh---------------hhhcccCCCCCC--ccEEEEeecC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA-KLESNV---------------SIAFGLGIDKPN--VRFVIHHCLS 136 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~-~~~~~~---------------T~~~~~Gid~~~--v~~Vi~~~~P 136 (234)
.+++++|+++|.+..+.+++.|......+ ...| +++... |..+..|+|+|+ ...||...+|
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLP 724 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNGTAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLP 724 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCccHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCC
Confidence 46789999999999999999997655444 3334 233322 778888999973 4556666665
Q ss_pred ----CC--------------------------HhHhhhhhcccccCCC-ceEEEEEeec
Q psy4494 137 ----KS--------------------------MENFYQESGRAGRDGQ-IAHCILYYRL 164 (234)
Q Consensus 137 ----~~--------------------------~~~y~qr~GR~gR~g~-~~~~i~~~~~ 164 (234)
.+ +..+.|-+||.=|... .|. +++.++
T Consensus 725 F~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gv-v~ilD~ 782 (820)
T PRK07246 725 FDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSA-VLILDR 782 (820)
T ss_pred CCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEE-EEEECC
Confidence 22 2245677888888654 454 444444
No 154
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=92.04 E-value=1.4 Score=43.01 Aligned_cols=99 Identities=12% Similarity=0.104 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------hhhcccCCCCCCc--
Q psy4494 62 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------SIAFGLGIDKPNV-- 127 (234)
Q Consensus 62 ~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------T~~~~~Gid~~~v-- 127 (234)
....|..-|. .++..-||++|...++.+++.....+-.+..++|.-...+ |.+...|+++...
T Consensus 271 F~~~L~~~L~---~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv~~W~~~~VviYT~~itvG~Sf~~~HF 347 (824)
T PF02399_consen 271 FFSELLARLN---AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDVESWKKYDVVIYTPVITVGLSFEEKHF 347 (824)
T ss_pred HHHHHHHHHh---CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccccccccceeEEEEeceEEEEeccchhhc
Confidence 3444444443 4667789999999999999999888888888888665544 7777778877644
Q ss_pred cEEEEeecC----CCHhHhhhhhcccccCCCceEEEEEeec
Q psy4494 128 RFVIHHCLS----KSMENFYQESGRAGRDGQIAHCILYYRL 164 (234)
Q Consensus 128 ~~Vi~~~~P----~~~~~y~qr~GR~gR~g~~~~~i~~~~~ 164 (234)
+-+.-|=-| .++.+.+|.+||. |.=.....+++++.
T Consensus 348 ~~~f~yvk~~~~gpd~~s~~Q~lgRv-R~l~~~ei~v~~d~ 387 (824)
T PF02399_consen 348 DSMFAYVKPMSYGPDMVSVYQMLGRV-RSLLDNEIYVYIDA 387 (824)
T ss_pred eEEEEEecCCCCCCcHHHHHHHHHHH-HhhccCeEEEEEec
Confidence 444444223 3677899999999 65445556666665
No 155
>KOG1002|consensus
Probab=91.61 E-value=0.29 Score=44.95 Aligned_cols=90 Identities=14% Similarity=0.117 Sum_probs=69.3
Q ss_pred hcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh--------------------hhhcccCCCCCCccEEEE
Q psy4494 73 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------------SIAFGLGIDKPNVRFVIH 132 (234)
Q Consensus 73 ~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~--------------------T~~~~~Gid~~~v~~Vi~ 132 (234)
....-++|||..-....+-+.-.|.+.|+.+.-+-|+|++.. ..|-|..++.-...+|+.
T Consensus 635 rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFm 714 (791)
T KOG1002|consen 635 RDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFM 714 (791)
T ss_pred cccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEe
Confidence 335567899999888888888999999999999999999977 344566777778889999
Q ss_pred eecCCCHhHhhhhhcccccCCC--ceEEEEEe
Q psy4494 133 HCLSKSMENFYQESGRAGRDGQ--IAHCILYY 162 (234)
Q Consensus 133 ~~~P~~~~~y~qr~GR~gR~g~--~~~~i~~~ 162 (234)
.|+=+++.--+|-..|.-|-|+ +-..+.|.
T Consensus 715 mDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~ 746 (791)
T KOG1002|consen 715 MDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFC 746 (791)
T ss_pred ecccccHHHHhhhhhhHHhhcCccceeEEEee
Confidence 9987888766676666666554 44444444
No 156
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=90.07 E-value=2.7 Score=35.10 Aligned_cols=88 Identities=13% Similarity=0.118 Sum_probs=64.0
Q ss_pred CCceeeeccCCCchh-----------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccc-cCCCceEEEEE
Q psy4494 100 GLRVSAYHAKLESNV-----------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAG-RDGQIAHCILY 161 (234)
Q Consensus 100 ~~~~~~~h~~~~~~~-----------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~g-R~g~~~~~i~~ 161 (234)
++.+...+++.+... -+.++||+-+++........-|...++++|+.=.-| |.|-...+-+|
T Consensus 110 ~~~v~~vNS~~~~~~ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~dl~Ri~ 189 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDSLDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYEDLCRIY 189 (239)
T ss_pred CceEEEEeCCCccccccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCcccccceEEe
Confidence 577888886654432 457899999999988888888889999999966666 77778888888
Q ss_pred eecccHHHhhhhHHhhhhhhHhHHHH
Q psy4494 162 YRLPDVFKLSSMVFDQQTGLANLYNI 187 (234)
Q Consensus 162 ~~~~d~~~~~~~~~~~~~~~~~l~~~ 187 (234)
.++.-...+..+...+..-++.++.|
T Consensus 190 ~~~~l~~~f~~i~~~~e~lr~~i~~~ 215 (239)
T PF10593_consen 190 MPEELYDWFRHIAEAEEELREEIKEM 215 (239)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87766666666665444444444444
No 157
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=88.89 E-value=1.4 Score=30.34 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=32.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 111 (234)
+..++++||.+-..+...+..|+..|+++..+.|+++
T Consensus 50 ~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 50 KDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 4568999999877888999999999999999999875
No 158
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=86.98 E-value=1.2 Score=44.74 Aligned_cols=73 Identities=22% Similarity=0.246 Sum_probs=53.4
Q ss_pred EEEEecchHHHHHHHHHHHHc------CCceeeeccCCCchh--------------------------------------
Q psy4494 79 GIIYTTSIKECEDLREELRNR------GLRVSAYHAKLESNV-------------------------------------- 114 (234)
Q Consensus 79 ~iIf~~t~~~~~~l~~~L~~~------~~~~~~~h~~~~~~~-------------------------------------- 114 (234)
++|=+++++.+-.++..|-.. .+....||+......
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 578888999999999888754 234778999872211
Q ss_pred ------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCC
Q psy4494 115 ------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQ 154 (234)
Q Consensus 115 ------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~ 154 (234)
|.+...|+|+. .+.+ +--|.++.+.+|++||..|.|.
T Consensus 839 ~~i~v~Tqv~E~g~D~d-fd~~--~~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDHD-YDWA--IADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEeccc-CCee--eeccCcHHHHHHHhhccccccc
Confidence 66667787765 3333 3458899999999999999664
No 159
>KOG1015|consensus
Probab=86.64 E-value=1.3 Score=43.82 Aligned_cols=99 Identities=17% Similarity=0.037 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhh-cCCCcEEEEecchHHHHHHHHHHHHc----------------------CCceeeeccCCCchh----
Q psy4494 62 CLDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNR----------------------GLRVSAYHAKLESNV---- 114 (234)
Q Consensus 62 ~~~~l~~~l~~~-~~~~~~iIf~~t~~~~~~l~~~L~~~----------------------~~~~~~~h~~~~~~~---- 114 (234)
++-.|+++|+.- .-+.+.|||..|.....-+-.+|... |..-..+-|..+..+
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 344455555421 23788999999998888888888631 222223334433332
Q ss_pred ------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEE
Q psy4494 115 ------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCIL 160 (234)
Q Consensus 115 ------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~ 160 (234)
|-|-+.|||.-..+.||.||..|++.-=.|-+=|+-|.|+.--+++
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyi 1270 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYI 1270 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceee
Confidence 8888999999999999999999999999999999999887544433
No 160
>KOG0352|consensus
Probab=86.25 E-value=0.15 Score=45.95 Aligned_cols=35 Identities=43% Similarity=0.902 Sum_probs=31.4
Q ss_pred HHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcC
Q psy4494 22 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKP 56 (234)
Q Consensus 22 ~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~ 56 (234)
++.|+||.|+|+||+++|+.+++++--||+.-++.
T Consensus 312 T~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRA 346 (641)
T KOG0352|consen 312 TVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRA 346 (641)
T ss_pred EeccccccCCcceeEEEecCchhhhHHHHHhcccc
Confidence 67899999999999999999999998898876653
No 161
>PRK14701 reverse gyrase; Provisional
Probab=84.96 E-value=1.5 Score=46.40 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=24.5
Q ss_pred CHhHhhhhhccccc--CC--CceEEEEEeeccc
Q psy4494 138 SMENFYQESGRAGR--DG--QIAHCILYYRLPD 166 (234)
Q Consensus 138 ~~~~y~qr~GR~gR--~g--~~~~~i~~~~~~d 166 (234)
++.+|+|-.||+.| +| .+|.++++++...
T Consensus 495 d~~tyiqasgrtsrl~~gg~tkgls~~~~d~~~ 527 (1638)
T PRK14701 495 DVRTYIQASGRTSRLFAGGITKGASVLIVDDPE 527 (1638)
T ss_pred CcccceeccchhhhccCCCcCCceEEEEecCHH
Confidence 78899999999999 34 4699999998754
No 162
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=84.73 E-value=2.3 Score=29.79 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=31.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 111 (234)
..++.++||.+=..+...+..|+..|+++..+.|++.
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 4578999999877889999999999999888888874
No 163
>KOG2340|consensus
Probab=84.28 E-value=3 Score=38.85 Aligned_cols=101 Identities=14% Similarity=0.124 Sum_probs=71.9
Q ss_pred cEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hh--hcccCCCCCCccEEEEeecCC
Q psy4494 78 SGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SI--AFGLGIDKPNVRFVIHHCLSK 137 (234)
Q Consensus 78 ~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~--~~~~Gid~~~v~~Vi~~~~P~ 137 (234)
-++||.++--.--++-.++++.++....+|-=.+.+. |. -+-+--++.+|+.||.|.+|.
T Consensus 554 ~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~ 633 (698)
T KOG2340|consen 554 GILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPN 633 (698)
T ss_pred ceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCC
Confidence 4699999999999999999887665444432222211 11 223467889999999999999
Q ss_pred CHh---Hhhhhhccccc----CCCceEEEEEeecccHHHhhhhHHhhh
Q psy4494 138 SME---NFYQESGRAGR----DGQIAHCILYYRLPDVFKLSSMVFDQQ 178 (234)
Q Consensus 138 ~~~---~y~qr~GR~gR----~g~~~~~i~~~~~~d~~~~~~~~~~~~ 178 (234)
.+. ..+-+.+|+-- ++....+.++|+..|...+..++..++
T Consensus 634 ~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivGter 681 (698)
T KOG2340|consen 634 NPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVGTER 681 (698)
T ss_pred CcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhhHHH
Confidence 876 44556666532 445688999999999988888776544
No 164
>KOG0701|consensus
Probab=83.44 E-value=1.4 Score=46.11 Aligned_cols=76 Identities=22% Similarity=0.219 Sum_probs=61.7
Q ss_pred CcEEEEecchHHHHHHHHHHHHcC-CceeeeccCCCchh-----------------------------hhhcccCCCCCC
Q psy4494 77 QSGIIYTTSIKECEDLREELRNRG-LRVSAYHAKLESNV-----------------------------SIAFGLGIDKPN 126 (234)
Q Consensus 77 ~~~iIf~~t~~~~~~l~~~L~~~~-~~~~~~h~~~~~~~-----------------------------T~~~~~Gid~~~ 126 (234)
-.+|+|++.+..+..+.+.+++.. .+...+-|.+.+.. |+++-.|+|.+.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 468999999999999998888652 23444555554433 888888999999
Q ss_pred ccEEEEeecCCCHhHhhhhhcccccC
Q psy4494 127 VRFVIHHCLSKSMENFYQESGRAGRD 152 (234)
Q Consensus 127 v~~Vi~~~~P~~~~~y~qr~GR~gR~ 152 (234)
+..|+.++.|....+|+|+.||+-+.
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccc
Confidence 99999999999999999999999654
No 165
>KOG1123|consensus
Probab=82.88 E-value=7.3 Score=36.22 Aligned_cols=73 Identities=19% Similarity=0.148 Sum_probs=53.4
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh-------------------hhhcccCCCCCCccEEEEeec
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------------------SIAFGLGIDKPNVRFVIHHCL 135 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~-------------------T~~~~~Gid~~~v~~Vi~~~~ 135 (234)
++.+.|||..+.-...+.|-.|. --.++|..++.+ +.+....+|+|..++.|+...
T Consensus 542 RgDKiIVFsDnvfALk~YAikl~-----KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISS 616 (776)
T KOG1123|consen 542 RGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISS 616 (776)
T ss_pred cCCeEEEEeccHHHHHHHHHHcC-----CceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcc
Confidence 67899999988776666665553 335667777766 445567999999999998754
Q ss_pred CC-CHhHhhhhhcccccC
Q psy4494 136 SK-SMENFYQESGRAGRD 152 (234)
Q Consensus 136 P~-~~~~y~qr~GR~gR~ 152 (234)
-. +-.+=.||.||.-|+
T Consensus 617 H~GSRRQEAQRLGRILRA 634 (776)
T KOG1123|consen 617 HGGSRRQEAQRLGRILRA 634 (776)
T ss_pred cccchHHHHHHHHHHHHH
Confidence 43 455778899988875
No 166
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=82.13 E-value=3.1 Score=28.97 Aligned_cols=37 Identities=14% Similarity=0.002 Sum_probs=31.1
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCC-ceeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~h~~~~ 111 (234)
+..++|+||++-..+...+..|+..|+ ++..+.|++.
T Consensus 55 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 55 RATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 467899999998888999999999998 5788888874
No 167
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=81.90 E-value=2 Score=29.35 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=32.1
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
...+.||||.+-..+..++..|+..|++ +..+.|++.
T Consensus 55 ~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 55 KDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 4578999999988999999999999987 888888874
No 168
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=81.13 E-value=9.3 Score=36.65 Aligned_cols=72 Identities=11% Similarity=0.088 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHc-CCceeeeccCCCc-hh-------------------hhhccc
Q psy4494 62 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLES-NV-------------------SIAFGL 120 (234)
Q Consensus 62 ~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~-~~~~~~~h~~~~~-~~-------------------T~~~~~ 120 (234)
....+..++.. ..++++|.+.|.+..+.+++.|... .++ ....|..+. .+ |..+..
T Consensus 458 ~~~~~~~~~~~--~~G~~lvLfTS~~~~~~~~~~l~~~l~~~-~l~qg~~~~~~~l~~~f~~~~~~~~~~vL~gt~sfwe 534 (636)
T TIGR03117 458 VSLSTAAILRK--AQGGTLVLTTAFSHISAIGQLVELGIPAE-IVIQSEKNRLASAEQQFLALYANGIQPVLIAAGGAWT 534 (636)
T ss_pred HHHHHHHHHHH--cCCCEEEEechHHHHHHHHHHHHhhcCCC-EEEeCCCccHHHHHHHHHHhhcCCCCcEEEeCCcccc
Confidence 44566666653 4678999999999999999999764 333 445565532 21 778888
Q ss_pred CCCC----------CCccEEEEeecC
Q psy4494 121 GIDK----------PNVRFVIHHCLS 136 (234)
Q Consensus 121 Gid~----------~~v~~Vi~~~~P 136 (234)
|+|+ ..++.||...+|
T Consensus 535 GvDv~~~~~~p~~G~~Ls~ViI~kLP 560 (636)
T TIGR03117 535 GIDLTHKPVSPDKDNLLTDLIITCAP 560 (636)
T ss_pred ccccCCccCCCCCCCcccEEEEEeCC
Confidence 9999 247889988777
No 169
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=80.21 E-value=4.2 Score=29.67 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=31.7
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCCc
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 112 (234)
+..++|+||.+-..+...+..|+..|++ +..+.|+++.
T Consensus 63 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~ 101 (117)
T cd01522 63 KDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEG 101 (117)
T ss_pred CCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceec
Confidence 4677999999988889999999999985 6668888864
No 170
>KOG4439|consensus
Probab=79.18 E-value=7.6 Score=37.45 Aligned_cols=86 Identities=15% Similarity=0.096 Sum_probs=68.1
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh---------------------hhhcccCCCCCCccEEEEe
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---------------------SIAFGLGIDKPNVRFVIHH 133 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~---------------------T~~~~~Gid~~~v~~Vi~~ 133 (234)
...+++|-..=.....-+...|...|.....+||....++ ..|-|.|+|..+-+|+|..
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 4556666554445556666788888999999999988766 4566789999999999999
Q ss_pred ecCCCHhHhhhhhcccccCCCceEEEE
Q psy4494 134 CLSKSMENFYQESGRAGRDGQIAHCIL 160 (234)
Q Consensus 134 ~~P~~~~~y~qr~GR~gR~g~~~~~i~ 160 (234)
|+-+++.-=-|-..|.=|.|++-..++
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEE
Confidence 999999988898899999888755444
No 171
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=77.73 E-value=6.7 Score=26.94 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=31.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
...+.+|||.+-..+...+..|+..|++ +..+.|++.
T Consensus 55 ~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~ 92 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFE 92 (96)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHH
Confidence 4678999999988999999999999985 777777763
No 172
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=76.31 E-value=4.3 Score=29.12 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=30.3
Q ss_pred CCCcEEEEecch--HHHHHHHHHHHHcCCceeeeccCCC
Q psy4494 75 RNQSGIIYTTSI--KECEDLREELRNRGLRVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~--~~~~~l~~~L~~~~~~~~~~h~~~~ 111 (234)
+..++++||++- ..+..++..|+..|+++..+.|++.
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~ 101 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLD 101 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHH
Confidence 457899999865 3688889999999999888888874
No 173
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=75.93 E-value=4 Score=28.36 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=30.3
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 111 (234)
++.+.++||.+=..+...+..|+..|+++..+.|++.
T Consensus 55 ~~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 55 RGARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 3567999999877778889999999999777788774
No 174
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=75.70 E-value=8.6 Score=26.92 Aligned_cols=37 Identities=8% Similarity=0.149 Sum_probs=31.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
...++++||++-..+...+..|...|++ +..+.|++.
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~ 94 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGID 94 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHH
Confidence 3678999999988889999999999985 778888864
No 175
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=75.32 E-value=9.7 Score=27.34 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=30.5
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
+..++|+||++-..+..++..|+..|++ +..|.|++.
T Consensus 77 ~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 114 (118)
T cd01449 77 PDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWS 114 (118)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHH
Confidence 4668999999977888999999999985 777777763
No 176
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=75.29 E-value=3.4 Score=30.33 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=31.6
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCC--ceeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGL--RVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~--~~~~~h~~~~ 111 (234)
..++.++||++-..+...+..|+..|+ .+..+.|++.
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~ 109 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLK 109 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHH
Confidence 457799999998888899999999999 5888888874
No 177
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=74.61 E-value=4 Score=28.69 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=30.1
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
+..+.+|||.+=..+...+..|...|++ +..+.|++.
T Consensus 60 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 60 KGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 4667999998877778888899999995 777888764
No 178
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=73.97 E-value=5.6 Score=27.72 Aligned_cols=37 Identities=14% Similarity=0.024 Sum_probs=30.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCC-ceeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~h~~~~ 111 (234)
..+++++||++-..+...+..|.+.|+ ++..+.|++.
T Consensus 53 ~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~ 90 (99)
T cd01527 53 GANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLD 90 (99)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHH
Confidence 356899999998888889999998887 5777888764
No 179
>PF13871 Helicase_C_4: Helicase_C-like
Probab=73.86 E-value=6.7 Score=33.57 Aligned_cols=29 Identities=31% Similarity=0.300 Sum_probs=25.1
Q ss_pred ccEEEEeecCCCHhHhhhhhcccccCCCc
Q psy4494 127 VRFVIHHCLSKSMENFYQESGRAGRDGQI 155 (234)
Q Consensus 127 v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~ 155 (234)
-+.-|...+|++.+.-+|..||+-|.++.
T Consensus 88 ~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~ 116 (278)
T PF13871_consen 88 RRVHITLELPWSADKAIQQFGRTHRSNQV 116 (278)
T ss_pred ceEEEEeeCCCCHHHHHHHhccccccccc
Confidence 45566789999999999999999998874
No 180
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=73.52 E-value=1.7 Score=44.14 Aligned_cols=35 Identities=54% Similarity=0.953 Sum_probs=32.5
Q ss_pred HHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcC
Q psy4494 22 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKP 56 (234)
Q Consensus 22 ~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~ 56 (234)
+.++++|||.|+|+++++..+|++++.||+..++.
T Consensus 737 TdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRA 771 (1195)
T PLN03137 737 TVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRA 771 (1195)
T ss_pred echhhcCCCccCCcEEEEcCCCCCHHHHHhhhccc
Confidence 67899999999999999999999999999988865
No 181
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=72.93 E-value=12 Score=28.55 Aligned_cols=38 Identities=8% Similarity=-0.060 Sum_probs=32.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCC-ceeeeccCCCc
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~h~~~~~ 112 (234)
...+++|+|.+-..+..++..|...|+ ++..+.|++..
T Consensus 48 ~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~a 86 (145)
T cd01535 48 AAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTAA 86 (145)
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHHH
Confidence 457899999998888888899998888 68889999854
No 182
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=72.88 E-value=4.7 Score=28.36 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=30.5
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
+..++++||.+-..+...+..|...|++ +..+.|++.
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH
Confidence 3568999999988888999999999985 777777764
No 183
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=72.01 E-value=7.9 Score=25.81 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=30.5
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCC-ceeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~h~~~~ 111 (234)
+..++|+||.+-..+..++..|+..|+ ++..+-|++.
T Consensus 49 ~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 49 KDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 567899999998899999999999976 4667777764
No 184
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=71.48 E-value=6.6 Score=27.98 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=29.7
Q ss_pred CCcEEEEecchHHHHHHHHHHHHcCCc--eeeeccCCC
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNRGLR--VSAYHAKLE 111 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~~~~--~~~~h~~~~ 111 (234)
..+.+|||.+-......+..|+..|++ +..+.|++.
T Consensus 66 ~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~ 103 (109)
T cd01533 66 RTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQ 103 (109)
T ss_pred CCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHH
Confidence 467999998877777788999999994 778888874
No 185
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=70.81 E-value=13 Score=27.41 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=29.7
Q ss_pred CCCcEEEEec-chHHHHHHHHHHHHcCCceeeeccCCC
Q psy4494 75 RNQSGIIYTT-SIKECEDLREELRNRGLRVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~-t~~~~~~l~~~L~~~~~~~~~~h~~~~ 111 (234)
+..+++|||. +-..+...+..|+..|+++..+.|++.
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~ 122 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYK 122 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHH
Confidence 4567999996 455677888888888999888999874
No 186
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=70.73 E-value=7.7 Score=26.79 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=28.3
Q ss_pred CCcEEEEecc--hHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 76 NQSGIIYTTS--IKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 76 ~~~~iIf~~t--~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
..+.++||.+ +..+...+..|+..|++ +..+.|++.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 5689999998 45577888999999884 777777764
No 187
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=70.64 E-value=9.2 Score=27.73 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=30.1
Q ss_pred CCCcEEEEecc-hHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTS-IKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t-~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
+..++|+||++ -..+..++..|+..|++ +..+-|++.
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 46789999988 47788888999999986 777878774
No 188
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=70.63 E-value=4.7 Score=28.14 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=29.8
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
+..+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~ 97 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFK 97 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHH
Confidence 4568999998877788888999999986 777777763
No 189
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=68.81 E-value=7.1 Score=27.41 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=29.9
Q ss_pred CCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
..++++||.+-..+...+..|+..|++ +..+.|++.
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 567999998877888889999999985 777888874
No 190
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=68.42 E-value=22 Score=28.28 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCc-------eeeeccCCCchh
Q psy4494 58 AQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLR-------VSAYHAKLESNV 114 (234)
Q Consensus 58 ~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~-------~~~~h~~~~~~~ 114 (234)
.-.+.+.+|.+.+.+.+.++..++.+--+...--+++.++...++ +..||++++...
T Consensus 16 ~I~~ri~ela~~I~~~y~g~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg 79 (178)
T COG0634 16 QIKARIKELAAQITEDYGGKDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSG 79 (178)
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCC
Confidence 345567778777777777777888888888888888888876443 788888888765
No 191
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=65.86 E-value=17 Score=30.71 Aligned_cols=40 Identities=23% Similarity=0.497 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCC
Q psy4494 59 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGL 101 (234)
Q Consensus 59 ~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~ 101 (234)
.-+.++.+.+.++ +++.+.+|+++.++++++...|++.|+
T Consensus 174 PW~~le~~~~~Lk---pgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 174 PWNVLEHVSDALK---PGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred hHHHHHHHHHHhC---CCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 3456777777776 678899999999999999999998865
No 192
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=64.69 E-value=19 Score=25.43 Aligned_cols=37 Identities=11% Similarity=0.129 Sum_probs=29.8
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
...+.+|||.+-..+...+..|+..|++ +..+.|++.
T Consensus 57 ~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T PRK00162 57 FDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFE 94 (108)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHH
Confidence 4567888998888888888899999986 677777774
No 193
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=64.09 E-value=19 Score=25.17 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=26.0
Q ss_pred CCCcEEEEecchHHHHHHHHH-----HHHcCC-ceeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREE-----LRNRGL-RVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~-----L~~~~~-~~~~~h~~~~ 111 (234)
....+|+||.+-......+.. |...|+ ++..+.||+.
T Consensus 66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 66 KDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHH
T ss_pred ccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHH
Confidence 345688889655555555555 777788 7888888764
No 194
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=62.21 E-value=1e+02 Score=27.70 Aligned_cols=130 Identities=17% Similarity=0.196 Sum_probs=77.0
Q ss_pred HHHHHHHHHhhcCCCcEEEEec---------chHHHHHHHHHHHHcCCce--eeeccCCCchh-----------------
Q psy4494 63 LDELADLMSRRFRNQSGIIYTT---------SIKECEDLREELRNRGLRV--SAYHAKLESNV----------------- 114 (234)
Q Consensus 63 ~~~l~~~l~~~~~~~~~iIf~~---------t~~~~~~l~~~L~~~~~~~--~~~h~~~~~~~----------------- 114 (234)
+..|.+.+.+ ..-+.+|.|| |+++.+.+++.-.++|+.+ --+|.++.-..
T Consensus 147 ~~~LE~~~~~--~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~ 224 (388)
T COG1168 147 FDALEKAFVD--ERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNS 224 (388)
T ss_pred HHHHHHHHhc--CCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcce
Confidence 4556655553 2346899997 7778888888888888764 34666554332
Q ss_pred --hhhcccCCCCCCccEEE-EeecCCCHhHhhhhhcccccCCCceEEEEEeecccHHHhhhhHHhhhhhhHhHHHHHHHh
Q psy4494 115 --SIAFGLGIDKPNVRFVI-HHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVFDQQTGLANLYNIVSYC 191 (234)
Q Consensus 115 --T~~~~~Gid~~~v~~Vi-~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~l~~~~~~~ 191 (234)
..+.+-+.|++++..-. ...-+..-..|+.|.-|.++.|-...+ +......-+.+...|++++.|+
T Consensus 225 it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg-----------~~A~~aAY~~G~~WLd~L~~yl 293 (388)
T COG1168 225 ITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALG-----------IIATEAAYNQGEPWLDELLEYL 293 (388)
T ss_pred EEEeeccccccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCchHH-----------HHHHHHHHHhchHHHHHHHHHH
Confidence 33345566666654311 122233346788887777776654322 1222223356678899999999
Q ss_pred hcCcccHHHHHHhHcCCC
Q psy4494 192 LDQTRCRRAIIASYFDEA 209 (234)
Q Consensus 192 ~~~~~Crr~~l~~~f~e~ 209 (234)
.+. |..+..+|++.
T Consensus 294 ~~N----~~~~~~~l~~~ 307 (388)
T COG1168 294 KDN----RDYVADFLNKH 307 (388)
T ss_pred HHH----HHHHHHHHHhh
Confidence 765 45555555544
No 195
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=62.20 E-value=20 Score=27.27 Aligned_cols=19 Identities=37% Similarity=0.405 Sum_probs=15.5
Q ss_pred cccCCCCCC--ccEEEEeecC
Q psy4494 118 FGLGIDKPN--VRFVIHHCLS 136 (234)
Q Consensus 118 ~~~Gid~~~--v~~Vi~~~~P 136 (234)
++.|||+++ .+.||..++|
T Consensus 59 ~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 59 VSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred eecceecCCCccEEEEEEecC
Confidence 567999986 5788888887
No 196
>PLN02160 thiosulfate sulfurtransferase
Probab=60.27 E-value=15 Score=27.68 Aligned_cols=37 Identities=14% Similarity=0.012 Sum_probs=31.3
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
+..+.|+||.+=..+...+..|...|++ +..|.|++.
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~ 117 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYL 117 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHH
Confidence 4578999999999999999999999985 667778774
No 197
>KOG0951|consensus
Probab=58.85 E-value=56 Score=34.07 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=19.7
Q ss_pred CCCcEEEEecchHHHHHHHHHHH
Q psy4494 75 RNQSGIIYTTSIKECEDLREELR 97 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~ 97 (234)
.++++|||+++++.|..++..|-
T Consensus 1358 ~~k~~~vf~p~rk~~~~~a~~~~ 1380 (1674)
T KOG0951|consen 1358 NRKPAIVFLPTRKHARLVAVDLV 1380 (1674)
T ss_pred CCCCeEEEeccchhhhhhhhccc
Confidence 57889999999999999886653
No 198
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=58.34 E-value=20 Score=25.71 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=28.5
Q ss_pred CCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCC
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 111 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 111 (234)
..+.++||++-..+...+..|...|++.....|++.
T Consensus 60 ~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 95 (104)
T PRK10287 60 NDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGLK 95 (104)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCHH
Confidence 456899999988889999999999987555556653
No 199
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=58.14 E-value=31 Score=30.28 Aligned_cols=64 Identities=14% Similarity=0.349 Sum_probs=43.5
Q ss_pred hhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchhhhhcccCCCCCCccEEE---EeecCCCHhHhhhhhcc
Q psy4494 72 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVI---HHCLSKSMENFYQESGR 148 (234)
Q Consensus 72 ~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~T~~~~~Gid~~~v~~Vi---~~~~P~~~~~y~qr~GR 148 (234)
+...+..++||+|. .-.+|.++|.+......+=.|...+ .+.|| +.+++.+..+++|..|-
T Consensus 87 ~~l~GnvgliFTn~--~p~ev~~~l~~~k~~a~AraG~IAp--------------~dVvvpaG~T~~~P~~~s~fq~LGI 150 (323)
T PTZ00240 87 NLLSGNTGLIFTNN--EVQEITSVLDSHRVKAPARVGAIAP--------------CDVIVPAGSTGMEPTQTSFFQALNI 150 (323)
T ss_pred ccccCCEEEEEeCC--CHHHHHHHHHHcCCcccccCCCCCC--------------ceEEECCCCCCCCCcchHHHHHcCC
Confidence 34567889999987 6788999998776655555555544 45555 44556666777777776
Q ss_pred ccc
Q psy4494 149 AGR 151 (234)
Q Consensus 149 ~gR 151 (234)
.-+
T Consensus 151 pTk 153 (323)
T PTZ00240 151 ATK 153 (323)
T ss_pred CeE
Confidence 654
No 200
>PRK05320 rhodanese superfamily protein; Provisional
Probab=57.88 E-value=15 Score=31.00 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=30.6
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
+.+++++||.+=..++..+..|++.|++ +..+.|++.
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~ 211 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGIL 211 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHH
Confidence 5678999999988999999999999985 666666663
No 201
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=57.06 E-value=36 Score=26.51 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=42.8
Q ss_pred cCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchhhhhcccCCCCCCccEEEEeec----CCCHhHhhhhhccc
Q psy4494 74 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHCL----SKSMENFYQESGRA 149 (234)
Q Consensus 74 ~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~T~~~~~Gid~~~v~~Vi~~~~----P~~~~~y~qr~GR~ 149 (234)
+.+..+++|++. +..++++.|.+..... +++.=++.-.+.||.-+. |.++..++|..|-.
T Consensus 76 l~G~~~lift~~--dp~~v~k~l~~~~~~~--------------~ar~G~iA~~dvvi~~G~~~~~p~~~~~~~~~lgip 139 (163)
T cd05796 76 LKGQVGLLFTNE--PPEEVIEYFDSYSEPD--------------FARAGSIATETVTLPEGPLEQFPHSMEPQLRKLGLP 139 (163)
T ss_pred hCCCEEEEEECC--CHHHHHHHHHHcCCcc--------------cccCCCCCCceEEEeCCCCCCCCCCcchHHHHcCCC
Confidence 356778889874 5777888887655443 334444455677776653 67888999998887
Q ss_pred ccC
Q psy4494 150 GRD 152 (234)
Q Consensus 150 gR~ 152 (234)
-+-
T Consensus 140 tki 142 (163)
T cd05796 140 TKL 142 (163)
T ss_pred eEE
Confidence 663
No 202
>PRK09401 reverse gyrase; Reviewed
Probab=56.74 E-value=7.5 Score=40.03 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=25.1
Q ss_pred CHhHhhhhhccccc--CC--CceEEEEEeecccH
Q psy4494 138 SMENFYQESGRAGR--DG--QIAHCILYYRLPDV 167 (234)
Q Consensus 138 ~~~~y~qr~GR~gR--~g--~~~~~i~~~~~~d~ 167 (234)
++.+|+|-.||+.| +| ..|.++++++....
T Consensus 518 d~~tYiqasGRtSrl~~gg~t~glsv~l~dd~~~ 551 (1176)
T PRK09401 518 DVTTYIQASGRTSRLYAGGLTKGLSVLLVDDEKL 551 (1176)
T ss_pred CcchheecccchhcccCCCccceeEEEEecCHHH
Confidence 78899999999999 34 37999999987553
No 203
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=55.97 E-value=25 Score=29.91 Aligned_cols=38 Identities=13% Similarity=-0.001 Sum_probs=31.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCCc
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 112 (234)
+.+++|+||++=..+-.++..|+..|++ +..|.|++..
T Consensus 230 ~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~e 268 (281)
T PRK11493 230 FDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSE 268 (281)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHH
Confidence 3567999999988899999999988985 8889988753
No 204
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=55.53 E-value=89 Score=23.66 Aligned_cols=51 Identities=24% Similarity=0.247 Sum_probs=29.9
Q ss_pred EEEEecchH--HHHHHHHHHHHcCCceeeeccCCCchhhhhcccCCCCCC--ccEEEEeecC
Q psy4494 79 GIIYTTSIK--ECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPN--VRFVIHHCLS 136 (234)
Q Consensus 79 ~iIf~~t~~--~~~~l~~~L~~~~~~~~~~h~~~~~~~T~~~~~Gid~~~--v~~Vi~~~~P 136 (234)
-.||..+.+ +...+.+.++..+-. ..+-|.. .+..|+|+++ .+.||..++|
T Consensus 24 ~~i~~e~~~~~~~~~~l~~f~~~~~~-~iL~~~~------~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 24 LLLLVQGEDGKETGKLLEKYVEACEN-AILLATA------RFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred CeEEEeCCChhHHHHHHHHHHHcCCC-EEEEEcc------ceecceecCCCCeeEEEEEecC
Confidence 357775543 345566665543221 2233322 2778999996 4688888877
No 205
>PRK01415 hypothetical protein; Validated
Probab=54.85 E-value=25 Score=29.56 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=31.2
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
.+++.++||.+=-.++..+..|+++|++ +..+.||+.
T Consensus 170 k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~ 207 (247)
T PRK01415 170 KGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGIL 207 (247)
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHH
Confidence 5678999999989999999999999986 666777764
No 206
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=53.22 E-value=27 Score=24.83 Aligned_cols=36 Identities=11% Similarity=0.180 Sum_probs=27.9
Q ss_pred CCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCC
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 111 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 111 (234)
..++++||++=..+...+..|.+.|++....-|++.
T Consensus 58 ~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 93 (101)
T TIGR02981 58 NDTVKLYCNAGRQSGMAKDILLDMGYTHAENAGGIK 93 (101)
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHcCCCeEEecCCHH
Confidence 457889999988889999999999987444346653
No 207
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=52.99 E-value=61 Score=31.16 Aligned_cols=39 Identities=10% Similarity=0.153 Sum_probs=31.3
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc-----CCceeeeccCCCch
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR-----GLRVSAYHAKLESN 113 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~ 113 (234)
...++||.++|++-+..+++.+... ++.+..+||+.+..
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~ 116 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHH
Confidence 3457899999999999998887643 67888999987654
No 208
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=52.28 E-value=20 Score=27.92 Aligned_cols=37 Identities=11% Similarity=0.077 Sum_probs=29.0
Q ss_pred CCCcEEEEecchH-HHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIK-ECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~-~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
+..++|+||.+-. .....+..|+..|++ +..|.|++.
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~ 153 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTD 153 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHH
Confidence 5678999999743 566778888899986 778888874
No 209
>KOG1133|consensus
Probab=52.08 E-value=2.4e+02 Score=27.65 Aligned_cols=104 Identities=18% Similarity=0.150 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhh--cCCCcEEEEecchHHHHHHHHHHHHcCCc-------eeeeccCCCchh-----------------
Q psy4494 61 DCLDELADLMSRR--FRNQSGIIYTTSIKECEDLREELRNRGLR-------VSAYHAKLESNV----------------- 114 (234)
Q Consensus 61 ~~~~~l~~~l~~~--~~~~~~iIf~~t~~~~~~l~~~L~~~~~~-------~~~~h~~~~~~~----------------- 114 (234)
..+..|-.++.+- .-++-+++|++|.+-...+.+.....|+. ...+-..-..++
T Consensus 612 ~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~GaiL 691 (821)
T KOG1133|consen 612 EMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRGAIL 691 (821)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCcccHHHHHHHHHHHhhcCCCeEE
Confidence 3444444444321 12466899999999888888888765543 122222222111
Q ss_pred ----hhhcccCCCCCC--ccEEEEeecCCC--------------------------------HhHhhhhhcccccCCCce
Q psy4494 115 ----SIAFGLGIDKPN--VRFVIHHCLSKS--------------------------------MENFYQESGRAGRDGQIA 156 (234)
Q Consensus 115 ----T~~~~~Gid~~~--v~~Vi~~~~P~~--------------------------------~~~y~qr~GR~gR~g~~~ 156 (234)
-.-++.|||+.| -+.||..|+|-. +...-|-+|||=|.-+.=
T Consensus 692 laVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DY 771 (821)
T KOG1133|consen 692 LAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDY 771 (821)
T ss_pred EEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 122345898875 378888888742 223457788888876665
Q ss_pred EEEEEeec
Q psy4494 157 HCILYYRL 164 (234)
Q Consensus 157 ~~i~~~~~ 164 (234)
.+|++++.
T Consensus 772 A~i~LlD~ 779 (821)
T KOG1133|consen 772 ASIYLLDK 779 (821)
T ss_pred eeEEEehh
Confidence 66666654
No 210
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=50.85 E-value=17 Score=25.42 Aligned_cols=37 Identities=11% Similarity=0.187 Sum_probs=30.4
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCcee-eeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVS-AYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~-~~h~~~~ 111 (234)
..++.+|||.+=......+..|+..|+... .+.|++.
T Consensus 60 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~ 97 (110)
T COG0607 60 DDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGID 97 (110)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcHH
Confidence 467899999999999999999999998765 5566653
No 211
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=49.75 E-value=67 Score=29.22 Aligned_cols=38 Identities=8% Similarity=0.216 Sum_probs=31.0
Q ss_pred CCcEEEEecchHHHHHHHHHHHHc-----CCceeeeccCCCch
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNR-----GLRVSAYHAKLESN 113 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~ 113 (234)
..++||.++|++-+..+++.++.. ++.+..++|+.+..
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~ 114 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMG 114 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChH
Confidence 346899999999999999888753 57788899988764
No 212
>PRK05580 primosome assembly protein PriA; Validated
Probab=48.41 E-value=54 Score=31.79 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=34.8
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc-CCceeeeccCCCchh
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESNV 114 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~ 114 (234)
.+.++||-++++..+.++.+.|++. |..+..+||+++..+
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~ 229 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGE 229 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHH
Confidence 3678999999999999999999874 788999999998754
No 213
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=48.35 E-value=1.1e+02 Score=28.55 Aligned_cols=60 Identities=22% Similarity=0.299 Sum_probs=44.4
Q ss_pred EEEEecchHHHHHHHHHHHHc-----CCceeeeccCCCchh-hhhcccCCCCCCccEEEEeecCCCHhHhhhh
Q psy4494 79 GIIYTTSIKECEDLREELRNR-----GLRVSAYHAKLESNV-SIAFGLGIDKPNVRFVIHHCLSKSMENFYQE 145 (234)
Q Consensus 79 ~iIf~~t~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~-T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr 145 (234)
+||.++|++-|..+++.+... ++.+..+.|+++... ...+..|.| .| .+.|.-+.+++++
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~-----iv--VaTPGRllD~i~~ 167 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVD-----IV--VATPGRLLDLIKR 167 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCC-----EE--EECccHHHHHHHc
Confidence 999999999999999888743 567889999988655 555555433 33 3567777777776
No 214
>PRK14873 primosome assembly protein PriA; Provisional
Probab=48.23 E-value=58 Score=31.56 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=35.3
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc-C-CceeeeccCCCchh
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR-G-LRVSAYHAKLESNV 114 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~-~-~~~~~~h~~~~~~~ 114 (234)
.++++||-++.+..+..+.+.|+.. | ..+..+|+++++.+
T Consensus 187 ~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~ 228 (665)
T PRK14873 187 AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPAD 228 (665)
T ss_pred cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHH
Confidence 4678999999999999999999865 4 67999999999987
No 215
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.90 E-value=60 Score=30.26 Aligned_cols=40 Identities=18% Similarity=0.304 Sum_probs=34.6
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc-CCceeeeccCCCchh
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESNV 114 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~ 114 (234)
.++++||-++++..+.++++.|++. +..+..+||+++..+
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~e 64 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSE 64 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHH
Confidence 4668999999999999999999865 778999999998764
No 216
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=46.56 E-value=26 Score=25.70 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=28.1
Q ss_pred CCCcEEEEec-chHHHHHHHHHHHHc------------CC-ceeeeccCCC
Q psy4494 75 RNQSGIIYTT-SIKECEDLREELRNR------------GL-RVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~-t~~~~~~l~~~L~~~------------~~-~~~~~h~~~~ 111 (234)
...++|+||. +-..+...+..|+.. |+ .+..+.||+.
T Consensus 67 ~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~ 117 (121)
T cd01530 67 KRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK 117 (121)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH
Confidence 4567899996 777788888888874 65 5777888874
No 217
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=46.39 E-value=25 Score=30.64 Aligned_cols=37 Identities=16% Similarity=0.382 Sum_probs=30.8
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
+.+++++||.+=..++..+.+|.+.|++ +..+.||+.
T Consensus 170 kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~ 207 (314)
T PRK00142 170 KDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGII 207 (314)
T ss_pred CcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHH
Confidence 5678999999988899999999999985 777777764
No 218
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=44.82 E-value=88 Score=30.32 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=32.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCch
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLESN 113 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~ 113 (234)
.+.+++|-++|+.-++..++.++.. |+++..+||+++..
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~ 351 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGK 351 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHH
Confidence 4668999999999999988887753 78999999999853
No 219
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=44.11 E-value=70 Score=25.20 Aligned_cols=62 Identities=16% Similarity=0.313 Sum_probs=40.5
Q ss_pred cCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchhhhhcccCCCCCCccEEEE---eecCCCHhHhhhhhcccc
Q psy4494 74 FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIH---HCLSKSMENFYQESGRAG 150 (234)
Q Consensus 74 ~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~T~~~~~Gid~~~v~~Vi~---~~~P~~~~~y~qr~GR~g 150 (234)
+.+..+++|++ .+...+++.|.+......+=.|... ..+.||. .++|.++..++|..|=--
T Consensus 75 l~G~~~liFt~--~dp~~v~k~l~~~~~~~~ar~G~iA--------------~~dvvi~~G~t~~~p~~~~~~~~lgipt 138 (175)
T cd05795 75 LKGNVGFIFTN--GDPFEIRKILEENKVPAPAKPGAIA--------------PCDVVVPAGPTGMPPGPTSFFQALGIPT 138 (175)
T ss_pred hcCCEEEEEEC--CCHHHHHHHHHHcCCcccccCCCcc--------------CceEEEcCCCcCCCCCchHHHHHcCCce
Confidence 45677888886 4677888888776554444444443 3555552 245667778999888765
Q ss_pred c
Q psy4494 151 R 151 (234)
Q Consensus 151 R 151 (234)
+
T Consensus 139 k 139 (175)
T cd05795 139 K 139 (175)
T ss_pred E
Confidence 5
No 220
>KOG0347|consensus
Probab=43.98 E-value=35 Score=32.26 Aligned_cols=36 Identities=14% Similarity=0.282 Sum_probs=32.5
Q ss_pred EEEEecchHHHHHHHHHHHHc----CCceeeeccCCCchh
Q psy4494 79 GIIYTTSIKECEDLREELRNR----GLRVSAYHAKLESNV 114 (234)
Q Consensus 79 ~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~ 114 (234)
++|+++|++-+..+.++|... ++.+..+.||++.+.
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqK 305 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQK 305 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHH
Confidence 899999999999999999854 889999999998765
No 221
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=43.59 E-value=52 Score=28.58 Aligned_cols=37 Identities=14% Similarity=0.025 Sum_probs=30.7
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
+..++|+||++=..+-.++-.|+..|++ +..|.|++.
T Consensus 268 ~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~ 305 (320)
T PLN02723 268 LDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWT 305 (320)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHH
Confidence 4568999999987888888888888985 788998875
No 222
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=43.22 E-value=1.2e+02 Score=28.66 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=35.1
Q ss_pred CCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV 114 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 114 (234)
.+.++|.++++.-+++.+..|+..|+.+..+|++++..+
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~ 91 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKE 91 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHH
Confidence 567899999999999999999999999999999988765
No 223
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=42.12 E-value=1.1e+02 Score=26.22 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=25.6
Q ss_pred CCcEEEEecchHH-----------HHHHHHHHHHcCCceeeeccCCCch
Q psy4494 76 NQSGIIYTTSIKE-----------CEDLREELRNRGLRVSAYHAKLESN 113 (234)
Q Consensus 76 ~~~~iIf~~t~~~-----------~~~l~~~L~~~~~~~~~~h~~~~~~ 113 (234)
..+++|+++|-++ +-.+|++++.+|..+..+-.+++.-
T Consensus 125 ~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 125 MEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred cceeEEEEeCCCCchhHHHHHHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 3456666665443 5667788887787887777777653
No 224
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=42.04 E-value=12 Score=38.49 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=24.9
Q ss_pred CCHhHhhhhhccccc--CC--CceEEEEEeeccc
Q psy4494 137 KSMENFYQESGRAGR--DG--QIAHCILYYRLPD 166 (234)
Q Consensus 137 ~~~~~y~qr~GR~gR--~g--~~~~~i~~~~~~d 166 (234)
.++.+|+|-.||+.| +| ..|.++++++...
T Consensus 515 pd~~tyiqasgrtsr~~~g~~t~gls~~~~~~~~ 548 (1171)
T TIGR01054 515 PDARTYIQASGRTSRLYAGGLTKGLSIVLVDDPE 548 (1171)
T ss_pred cCccceeEccChhhhcccCCcCCceEEEEecCHH
Confidence 378899999999999 34 4699999998754
No 225
>KOG1016|consensus
Probab=41.10 E-value=91 Score=31.03 Aligned_cols=91 Identities=19% Similarity=0.182 Sum_probs=64.7
Q ss_pred CCcEEEEecchHHHHHHHHHHHHcCCceee------------------eccCCCchh---------------------hh
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNRGLRVSA------------------YHAKLESNV---------------------SI 116 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~------------------~h~~~~~~~---------------------T~ 116 (234)
+.+.|||..+......+-+.|.+..+++.. +.|..+... |.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 467899999988888888888765433211 111111111 66
Q ss_pred hcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeeccc
Q psy4494 117 AFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPD 166 (234)
Q Consensus 117 ~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d 166 (234)
+-..||+.-..+.+|.||.-++..--.|.+-|.=|-|+.--|++|----|
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD 848 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMD 848 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhh
Confidence 66779999888899999999999988999999999888766666543333
No 226
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=41.02 E-value=94 Score=27.98 Aligned_cols=39 Identities=10% Similarity=0.099 Sum_probs=30.6
Q ss_pred CCcEEEEecchHHHHHHHHHHHH----cCCceeeeccCCCchh
Q psy4494 76 NQSGIIYTTSIKECEDLREELRN----RGLRVSAYHAKLESNV 114 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~ 114 (234)
..++||.++|+.-++.+++.+.. .++++..++|+.+...
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~ 115 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMN 115 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHH
Confidence 35789999999999988876654 3778999999876543
No 227
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=40.95 E-value=82 Score=27.41 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=28.8
Q ss_pred CcEEEEec-chHHHHHHHHHHHHcCCceeeeccCCC
Q psy4494 77 QSGIIYTT-SIKECEDLREELRNRGLRVSAYHAKLE 111 (234)
Q Consensus 77 ~~~iIf~~-t~~~~~~l~~~L~~~~~~~~~~h~~~~ 111 (234)
..++|||. +=..+..++..|...|+++..+.|++.
T Consensus 75 ~~vvvyC~~gG~RS~~aa~~L~~~G~~v~~L~GG~~ 110 (311)
T TIGR03167 75 PQPLLYCWRGGMRSGSLAWLLAQIGFRVPRLEGGYK 110 (311)
T ss_pred CcEEEEECCCChHHHHHHHHHHHcCCCEEEecChHH
Confidence 34899994 556788889999999999888988873
No 228
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=39.36 E-value=45 Score=25.07 Aligned_cols=37 Identities=11% Similarity=-0.081 Sum_probs=27.4
Q ss_pred CCCcEEEEecc---hHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTS---IKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t---~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
+..++||||.+ -..+-.++-.|+..|++ +..|.|+++
T Consensus 94 ~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 94 LDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred CCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 35689999976 34566777778888875 778888864
No 229
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.03 E-value=1.7e+02 Score=22.06 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=46.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCc-eeeec-----cCCCchh-hhhcccCCCCCCccE
Q psy4494 57 AAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLR-VSAYH-----AKLESNV-SIAFGLGIDKPNVRF 129 (234)
Q Consensus 57 ~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h-----~~~~~~~-T~~~~~Gid~~~v~~ 129 (234)
+++++-++.+.+.+. ..++..|-.++.+....+-+.|+..+.. +..+. ++++.-- ..-.-||+|+.+.++
T Consensus 20 GD~eeEve~ireyi~---sA~r~vV~t~N~~K~~aindvlrrf~l~Eaeml~~~T~~ADlTrmPA~tKalmaldis~ADl 96 (156)
T COG4019 20 GDKEEEVEKIREYIV---SAKRIVVATNNQKKFKAINDVLRRFCLAEAEMLDIDTRFADLTRMPALTKALMALDISKADL 96 (156)
T ss_pred cchHHHHHHHHHHHh---ccceEEEecCCHHHHHHHHHHHHHhccchHHHhcCccchhhcccChHHHHHHHhccccCCcE
Confidence 445556677776665 4678888899999999999999876442 11110 1111100 223357999999999
Q ss_pred EEE
Q psy4494 130 VIH 132 (234)
Q Consensus 130 Vi~ 132 (234)
||-
T Consensus 97 vIA 99 (156)
T COG4019 97 VIA 99 (156)
T ss_pred EEe
Confidence 984
No 230
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=37.82 E-value=1.7e+02 Score=22.78 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=31.3
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCchh
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLESNV 114 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~ 114 (234)
...++||.++++..+...+..++.. ++.+..++|+.+..+
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDK 111 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH
Confidence 4557999999999999988877654 677888888877543
No 231
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=37.65 E-value=1.5e+02 Score=21.48 Aligned_cols=36 Identities=11% Similarity=0.072 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHH
Q psy4494 59 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREEL 96 (234)
Q Consensus 59 ~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L 96 (234)
..+.+..+.+.+.. .++|+++||.|=..+-.++..=
T Consensus 71 ~~~~v~~f~~~l~~--~~~Pvl~hC~sG~Ra~~l~~l~ 106 (110)
T PF04273_consen 71 TEEDVEAFADALES--LPKPVLAHCRSGTRASALWALA 106 (110)
T ss_dssp -HHHHHHHHHHHHT--TTTSEEEE-SCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh--CCCCEEEECCCChhHHHHHHHH
Confidence 34556667777654 4679999999988877766543
No 232
>PTZ00135 60S acidic ribosomal protein P0; Provisional
Probab=37.55 E-value=88 Score=27.26 Aligned_cols=63 Identities=16% Similarity=0.265 Sum_probs=38.6
Q ss_pred hcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchhhhhcccCCCCCCccEEE---EeecCCCHhHhhhhhccc
Q psy4494 73 RFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVI---HHCLSKSMENFYQESGRA 149 (234)
Q Consensus 73 ~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~T~~~~~Gid~~~v~~Vi---~~~~P~~~~~y~qr~GR~ 149 (234)
.+.+..++||++. ....+++.|.+......+ ++=++...+.|| +.+++.+..+++|..|-.
T Consensus 81 ~LkG~~gliFTn~--dp~ev~k~l~~~k~~~~A--------------KaG~iAp~dv~ip~G~t~~~P~~~~~fq~Lgip 144 (310)
T PTZ00135 81 HVKGNVGFVFTKD--DLFEVKPVILENKVPAPA--------------RAGVIAPIDVVIPAGPTGMDPSQTSFFQALGIA 144 (310)
T ss_pred hccCCEEEEEECC--CHHHHHHHHHHcCCcccc--------------ccCCCCCceEEEcCCCCCCCcchhhHHHHcCCc
Confidence 3457778999874 567888888765443222 333333455555 445566667777777765
Q ss_pred cc
Q psy4494 150 GR 151 (234)
Q Consensus 150 gR 151 (234)
-+
T Consensus 145 Tk 146 (310)
T PTZ00135 145 TK 146 (310)
T ss_pred eE
Confidence 54
No 233
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=37.49 E-value=58 Score=31.91 Aligned_cols=50 Identities=18% Similarity=0.387 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHc-CCceeeeccCCCchh
Q psy4494 62 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESNV 114 (234)
Q Consensus 62 ~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~ 114 (234)
.++.+.+.+. .++.+||-++-+...-.+.+.++.. |.++..+|+++++.+
T Consensus 234 Yl~~i~~~L~---~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~e 284 (730)
T COG1198 234 YLEAIAKVLA---QGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGE 284 (730)
T ss_pred HHHHHHHHHH---cCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHH
Confidence 3444445554 4678999999999999999999865 889999999999987
No 234
>PRK06936 type III secretion system ATPase; Provisional
Probab=37.32 E-value=2.6e+02 Score=25.75 Aligned_cols=86 Identities=13% Similarity=0.197 Sum_probs=49.6
Q ss_pred CCcEEEEecchHH-----------HHHHHHHHHHcCCceeeeccCCCchh----hhhcccCCCCCCccEEEEeecCCCHh
Q psy4494 76 NQSGIIYTTSIKE-----------CEDLREELRNRGLRVSAYHAKLESNV----SIAFGLGIDKPNVRFVIHHCLSKSME 140 (234)
Q Consensus 76 ~~~~iIf~~t~~~-----------~~~l~~~L~~~~~~~~~~h~~~~~~~----T~~~~~Gid~~~v~~Vi~~~~P~~~~ 140 (234)
-++++++++|-++ +-.+|++++.+|..|..+-.+++.-. -.++..|--.. --+.|.++.
T Consensus 216 l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfrd~G~~Vll~~DslTR~A~A~REisl~~gepP~------~~gyp~svf 289 (439)
T PRK06936 216 LRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPT------RRGYPPSVF 289 (439)
T ss_pred cceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCCCc------cccCCccHH
Confidence 3567777765543 56788888888888888887776543 22333332211 124566554
Q ss_pred ----HhhhhhcccccCCCceEEEEEeecccH
Q psy4494 141 ----NFYQESGRAGRDGQIAHCILYYRLPDV 167 (234)
Q Consensus 141 ----~y~qr~GR~gR~g~~~~~i~~~~~~d~ 167 (234)
.++.|+|+.+...-.+...+++...|+
T Consensus 290 s~l~~l~ERaG~~~~GSIT~i~tVl~~gdD~ 320 (439)
T PRK06936 290 AALPRLMERAGQSDKGSITALYTVLVEGDDM 320 (439)
T ss_pred HHHHHHHHhhccCCCcceeeeEEEEccCCCC
Confidence 666777775322234555555555553
No 235
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=37.22 E-value=2.1e+02 Score=26.40 Aligned_cols=86 Identities=16% Similarity=0.232 Sum_probs=53.1
Q ss_pred CCcEEEEecchH-----------HHHHHHHHHHHcCCceeeeccCCCchh----hhhcccCCCCCCccEEEEeecCCC--
Q psy4494 76 NQSGIIYTTSIK-----------ECEDLREELRNRGLRVSAYHAKLESNV----SIAFGLGIDKPNVRFVIHHCLSKS-- 138 (234)
Q Consensus 76 ~~~~iIf~~t~~-----------~~~~l~~~L~~~~~~~~~~h~~~~~~~----T~~~~~Gid~~~v~~Vi~~~~P~~-- 138 (234)
-.+++||+++-+ .+-.+|++++.+|..|..+..+++.-. ..++.+|--.. .-+.|.+
T Consensus 229 ~~~tvVv~~~ad~~~~~r~~~~~~a~tiAEyfrd~G~~Vll~~DslTr~A~A~rEisl~~ge~P~------~~gypp~~f 302 (455)
T PRK07960 229 RARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPA------TKGYPPSVF 302 (455)
T ss_pred CceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecchhHHHHHHHHHHHhcCCCCc------cccCCcchh
Confidence 457888887644 456688999999999999988887644 33444442211 1234544
Q ss_pred --HhHhhhhhcccc-cCC-CceEEEEEeecccH
Q psy4494 139 --MENFYQESGRAG-RDG-QIAHCILYYRLPDV 167 (234)
Q Consensus 139 --~~~y~qr~GR~g-R~g-~~~~~i~~~~~~d~ 167 (234)
...++.|+|+.- +.| -.+...++++..|+
T Consensus 303 ~~l~~l~ERag~~~~~~GSIT~i~tVlv~~dD~ 335 (455)
T PRK07960 303 AKLPALVERAGNGISGGGSITAFYTVLTEGDDQ 335 (455)
T ss_pred hhhhHHHHHHhcCCCCCeeeeeEEEEEEcCCCC
Confidence 446788888852 333 24555566665554
No 236
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=37.03 E-value=49 Score=29.28 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=31.1
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
...+.++||++-..+...+..|+..|++ +..+.|++.
T Consensus 313 ~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~ 350 (355)
T PRK05597 313 AGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIE 350 (355)
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHH
Confidence 3567899999988899999999999996 777888874
No 237
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=36.93 E-value=98 Score=27.36 Aligned_cols=38 Identities=16% Similarity=0.308 Sum_probs=30.8
Q ss_pred CCCcEEEEec-chHHHHHHHHHHHHcCCceeeeccCCCc
Q psy4494 75 RNQSGIIYTT-SIKECEDLREELRNRGLRVSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~-t~~~~~~l~~~L~~~~~~~~~~h~~~~~ 112 (234)
+..+++|||. +=..+..++..|...|+++..+.|++..
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~a 125 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKA 125 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHH
Confidence 4668999994 5456888899999999998889998754
No 238
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=35.92 E-value=2.8e+02 Score=23.72 Aligned_cols=86 Identities=12% Similarity=0.112 Sum_probs=48.0
Q ss_pred CCcEEEEecchH-----------HHHHHHHHHHHc-CCceeeeccCCCchh----hhhcccCCCCCCccEEEEeecCCC-
Q psy4494 76 NQSGIIYTTSIK-----------ECEDLREELRNR-GLRVSAYHAKLESNV----SIAFGLGIDKPNVRFVIHHCLSKS- 138 (234)
Q Consensus 76 ~~~~iIf~~t~~-----------~~~~l~~~L~~~-~~~~~~~h~~~~~~~----T~~~~~Gid~~~v~~Vi~~~~P~~- 138 (234)
-++++|+++|-+ .+-.+|++++.+ |..|..+..+++.-. ..++.+|=- |.- -+.|.+
T Consensus 126 ~~~tvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~A~reis~~~ge~-p~~-----~gyp~~~ 199 (274)
T cd01133 126 LSKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRM-PSA-----VGYQPTL 199 (274)
T ss_pred cceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeChhHHHHHHHHHHHHcCCC-CCC-----cCcCccH
Confidence 356677766543 356677888877 888888888877643 112222211 111 133443
Q ss_pred ---HhHhhhhhcccccCCCceEEEEEeecccH
Q psy4494 139 ---MENFYQESGRAGRDGQIAHCILYYRLPDV 167 (234)
Q Consensus 139 ---~~~y~qr~GR~gR~g~~~~~i~~~~~~d~ 167 (234)
...++.|+|+.+...-.+..+++....|+
T Consensus 200 f~~~~~l~ERag~~~~GSiT~~~~v~~~~dD~ 231 (274)
T cd01133 200 ATEMGALQERITSTKKGSITSVQAVYVPADDL 231 (274)
T ss_pred HHHHHHHHHHhcCCCCcccceEEEEEecCCCC
Confidence 44667787875433334566666665555
No 239
>KOG0298|consensus
Probab=35.52 E-value=68 Score=33.29 Aligned_cols=81 Identities=11% Similarity=-0.055 Sum_probs=56.7
Q ss_pred CCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh--------------hhhcccCCCCCCccEEEEeecCCCHhH
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------SIAFGLGIDKPNVRFVIHHCLSKSMEN 141 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~--------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~ 141 (234)
..++|+|+.=-...+-+...+...+++....-++-+... +..-+-|++.-+..+|+..++--+...
T Consensus 1221 qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~d~~dc~~~fk~I~clll~~~~~~~GLNL~eA~Hvfl~ePiLN~~~ 1300 (1394)
T KOG0298|consen 1221 QEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETEDFDDCIICFKSIDCLLLFVSKGSKGLNLIEATHVFLVEPILNPGD 1300 (1394)
T ss_pred CceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCcchhhhhhhcccceEEEEEeccCcccccHHhhhhhheeccccCchH
Confidence 456888886555555555555555554433333222222 555677999999999999998889999
Q ss_pred hhhhhcccccCCCce
Q psy4494 142 FYQESGRAGRDGQIA 156 (234)
Q Consensus 142 y~qr~GR~gR~g~~~ 156 (234)
-.|-+||.-|-|+.-
T Consensus 1301 E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1301 EAQAIGRVHRIGQKR 1315 (1394)
T ss_pred HHhhhhhhhhccccc
Confidence 999999999988753
No 240
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=35.37 E-value=26 Score=30.76 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=27.5
Q ss_pred eeeeccCCCchh---------hhhcccCCCCCCccEEEEeecCCCHh-Hhhhhhccc
Q psy4494 103 VSAYHAKLESNV---------SIAFGLGIDKPNVRFVIHHCLSKSME-NFYQESGRA 149 (234)
Q Consensus 103 ~~~~h~~~~~~~---------T~~~~~Gid~~~v~~Vi~~~~P~~~~-~y~qr~GR~ 149 (234)
...+||.++.-- +-..+.|+|.|+| .++ .|++.+||+
T Consensus 276 ~GvlhG~~tyllQd~~GQi~e~hSISAGLDYPgV----------GPeha~l~~~gRa 322 (396)
T COG0133 276 PGVLHGMKTYLLQDEDGQILESHSISAGLDYPGV----------GPEHAYLKDIGRA 322 (396)
T ss_pred ceeeecccceeeEcCCCCEeeeeeeccCCCCCCC----------ChhHHHHHhcCce
Confidence 567777765311 7778889999988 333 699999997
No 241
>PF13245 AAA_19: Part of AAA domain
Probab=34.63 E-value=1.1e+02 Score=20.47 Aligned_cols=46 Identities=17% Similarity=0.322 Sum_probs=30.0
Q ss_pred HHHHHHHHHHh-hcCCCcEEEEecchHHHHHHHHHHHHcCCc-eeeecc
Q psy4494 62 CLDELADLMSR-RFRNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHA 108 (234)
Q Consensus 62 ~~~~l~~~l~~-~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~ 108 (234)
....+..++.. ...++++++.+.|+..++.+.+.| ..+.. +..+|+
T Consensus 27 ~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl-~~~~~~~~T~h~ 74 (76)
T PF13245_consen 27 LAARIAELLAARADPGKRVLVLAPTRAAADELRERL-GLGVPFAMTIHS 74 (76)
T ss_pred HHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH-cCCCcchhhHHH
Confidence 34444555531 112678899999999999999999 33333 566664
No 242
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=34.07 E-value=1.5e+02 Score=28.49 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=33.5
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCchh
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLESNV 114 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~ 114 (234)
.+.+++|-++|+.-++.+++.+++. |+++..+||+++..+
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~ 326 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKR 326 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHH
Confidence 4668999999999999998887753 789999999987654
No 243
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=33.93 E-value=2.1e+02 Score=21.65 Aligned_cols=73 Identities=12% Similarity=0.065 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhc-CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCch----hhhhcc-cC-CCCCCccEEEEee
Q psy4494 62 CLDELADLMSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----VSIAFG-LG-IDKPNVRFVIHHC 134 (234)
Q Consensus 62 ~~~~l~~~l~~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~----~T~~~~-~G-id~~~v~~Vi~~~ 134 (234)
+...+..++.+.+ .+.+++|+|.+.+.++.|-+.|=...-....-|+-.... +-..++ .+ -+.++-+.+||.+
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~~~~~PV~l~~~~~~~~~~~~~LinL~ 93 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEGPAAGQPVLLTWPGKRNANHRDLLINLD 93 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCCCCCCCCEEEEcCCCCCCCCCcEEEECC
Confidence 4444445544333 478999999999999999999865544455556532221 122222 22 3334456788775
No 244
>KOG0331|consensus
Probab=33.61 E-value=2.4e+02 Score=26.57 Aligned_cols=76 Identities=9% Similarity=0.132 Sum_probs=51.7
Q ss_pred CCcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCchh-hhhccc-------------------CCCCCCccEEE
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLESNV-SIAFGL-------------------GIDKPNVRFVI 131 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~-T~~~~~-------------------Gid~~~v~~Vi 131 (234)
...+||-++|++.+..+.....+. +++...+.|+.+... -..+.+ -+|...+.++|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylV 244 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLV 244 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEE
Confidence 456999999999999999998865 455777888877654 222222 34555666655
Q ss_pred E--------eecCCCHhHhhhhhccccc
Q psy4494 132 H--------HCLSKSMENFYQESGRAGR 151 (234)
Q Consensus 132 ~--------~~~P~~~~~y~qr~GR~gR 151 (234)
- .++-..+...+++++|.-|
T Consensus 245 LDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 245 LDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 3 2444566677888777766
No 245
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=33.60 E-value=1.7e+02 Score=22.40 Aligned_cols=67 Identities=18% Similarity=0.181 Sum_probs=47.7
Q ss_pred cchHHHHHHHHHHHHcCCceeeeccCCCchh---hhhcccCCCCC-CccEEEEeecCCCHhHhhhhhcccc
Q psy4494 84 TSIKECEDLREELRNRGLRVSAYHAKLESNV---SIAFGLGIDKP-NVRFVIHHCLSKSMENFYQESGRAG 150 (234)
Q Consensus 84 ~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~---T~~~~~Gid~~-~v~~Vi~~~~P~~~~~y~qr~GR~g 150 (234)
+..+....++++|.++|+++.+.+-...-++ -.+...=.|+| .|+.|..|..|+-.......+=..|
T Consensus 27 ~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR~~e~~~~i~~eal~~~ 97 (140)
T COG1832 27 KPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFRRSEAAPEVAREALEKG 97 (140)
T ss_pred CCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEecChhhhHHHHHHHHhhC
Confidence 4456889999999999999999877655443 22222233444 7899999999988877777655444
No 246
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=32.55 E-value=1.7e+02 Score=27.33 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=31.1
Q ss_pred CCCcEEEEecchHH-----------HHHHHHHHHHcCCceeeeccCCCchh
Q psy4494 75 RNQSGIIYTTSIKE-----------CEDLREELRNRGLRVSAYHAKLESNV 114 (234)
Q Consensus 75 ~~~~~iIf~~t~~~-----------~~~l~~~L~~~~~~~~~~h~~~~~~~ 114 (234)
.-.+++|+++|-++ +-.+|++++.+|..|..+-.+++.-.
T Consensus 217 ~l~~tvvv~atsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLli~DdlTr~A 267 (502)
T PRK09281 217 AMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYDDLSKQA 267 (502)
T ss_pred CccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCchHHH
Confidence 34578888877665 77888899888888888888887644
No 247
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=32.37 E-value=57 Score=28.26 Aligned_cols=52 Identities=12% Similarity=0.276 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCCc
Q psy4494 60 KDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLES 112 (234)
Q Consensus 60 ~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 112 (234)
.+...++.+.. +.+.+++++.||.-==.||..+.+|.+.|+. |..++||.-.
T Consensus 157 refP~~v~~~~-~~~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~ 209 (308)
T COG1054 157 REFPAWVEENL-DLLKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILK 209 (308)
T ss_pred hhhHHHHHHHH-HhccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHH
Confidence 34444555433 3456789999998888999999999999995 8888888643
No 248
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=32.29 E-value=2.9e+02 Score=25.33 Aligned_cols=86 Identities=15% Similarity=0.201 Sum_probs=49.5
Q ss_pred CCcEEEEecchHH-----------HHHHHHHHHHcCCceeeeccCCCchh----hhhcccCCCCCCccEEEEeecCCC--
Q psy4494 76 NQSGIIYTTSIKE-----------CEDLREELRNRGLRVSAYHAKLESNV----SIAFGLGIDKPNVRFVIHHCLSKS-- 138 (234)
Q Consensus 76 ~~~~iIf~~t~~~-----------~~~l~~~L~~~~~~~~~~h~~~~~~~----T~~~~~Gid~~~v~~Vi~~~~P~~-- 138 (234)
..++++++++-++ +-.+|++++.+|..+..+-.+++.-. -.++..|=-...- +.|.+
T Consensus 209 ~~rtv~vv~tsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~------Gyp~svf 282 (433)
T PRK07594 209 RKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSG------EYPPGVF 282 (433)
T ss_pred cceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHHHHHHHhcCCCCCCC------CcCchhH
Confidence 4577777766443 67788888888888888877776533 2222222111111 34444
Q ss_pred --HhHhhhhhcccccCCCceEEEEEeecccH
Q psy4494 139 --MENFYQESGRAGRDGQIAHCILYYRLPDV 167 (234)
Q Consensus 139 --~~~y~qr~GR~gR~g~~~~~i~~~~~~d~ 167 (234)
....+.|+|+.+...-.+..+++++..|+
T Consensus 283 ~~l~~l~ERag~~~~GSIT~~~tVl~~gdD~ 313 (433)
T PRK07594 283 SALPRLLERTGMGEKGSITAFYTVLVEGDDM 313 (433)
T ss_pred HHhHHHHHhhcCCCCcchheeeeeeecCCCC
Confidence 44777888865322234666666665554
No 249
>PRK13019 clpS ATP-dependent Clp protease adaptor; Reviewed
Probab=32.13 E-value=1.6e+02 Score=20.81 Aligned_cols=29 Identities=17% Similarity=0.485 Sum_probs=26.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCce
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRV 103 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~ 103 (234)
..++++|+.-+++.||.-+..|...|+++
T Consensus 62 ~~G~avv~~~~~E~AE~~~~~l~~~glt~ 90 (94)
T PRK13019 62 KEGSAVVWVGPLEQAELYHQQLTDAGLTM 90 (94)
T ss_pred cCCcEEEEEecHHHHHHHHHHHHHccccc
Confidence 57899999999999999999999988754
No 250
>KOG0330|consensus
Probab=31.86 E-value=1.3e+02 Score=27.42 Aligned_cols=51 Identities=18% Similarity=0.282 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCchh
Q psy4494 63 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLESNV 114 (234)
Q Consensus 63 ~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~ 114 (234)
+..|..++.+. ....++|.++|++-+..+++.+... |+++..+-||++...
T Consensus 117 LPIl~~LL~~p-~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~ 171 (476)
T KOG0330|consen 117 LPILQRLLQEP-KLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMML 171 (476)
T ss_pred HHHHHHHHcCC-CCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHH
Confidence 44455555532 4567999999999999999888765 788999999998754
No 251
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.37 E-value=1.2e+02 Score=27.68 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=35.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV 114 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 114 (234)
..+.+||.++++.-+++....|+..|+++..++|+.+..+
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~ 89 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQ 89 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHH
Confidence 3567999999999999999999999999999999887653
No 252
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=29.95 E-value=67 Score=28.58 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=30.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCCc
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 112 (234)
+..+.++||++-..+...+..|+..|++ +..+.|++..
T Consensus 56 ~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 94 (376)
T PRK08762 56 RDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFSA 94 (376)
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHH
Confidence 4577999999977788889999999984 7788887654
No 253
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=29.72 E-value=65 Score=21.83 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.3
Q ss_pred CCcEEEEecchHHHHHHHHHHHHcC
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNRG 100 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~~ 100 (234)
.++++|++-+++.|+..+..|...|
T Consensus 47 ~G~avv~~~~~e~ae~~~~~l~~~g 71 (82)
T PF02617_consen 47 EGRAVVGTGSREEAEEYAEKLQRAG 71 (82)
T ss_dssp HSEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred cCCEeeeeCCHHHHHHHHHHHHHHh
Confidence 5679999999999999999998776
No 254
>PRK07411 hypothetical protein; Validated
Probab=29.35 E-value=79 Score=28.39 Aligned_cols=37 Identities=8% Similarity=0.014 Sum_probs=31.5
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 111 (234)
+.++.++||.+-..+...+..|+..|++...+.|++.
T Consensus 341 ~d~~IVvyC~~G~RS~~aa~~L~~~G~~~~~l~GG~~ 377 (390)
T PRK07411 341 NGHRLIAHCKMGGRSAKALGILKEAGIEGTNVKGGIT 377 (390)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCeEEecchHH
Confidence 4567999999999999999999999998767777764
No 255
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=29.35 E-value=27 Score=22.82 Aligned_cols=41 Identities=12% Similarity=0.248 Sum_probs=17.5
Q ss_pred hhhhhHhHHHHHHHhhcCcccHHHHHHhHcCCCCCCCccCCCCCCCCCCC
Q psy4494 177 QQTGLANLYNIVSYCLDQTRCRRAIIASYFDEAWSDTECRGMCDHCRGGR 226 (234)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~Crr~~l~~~f~e~~~~~~c~~~Cd~C~~~~ 226 (234)
.....+.++.|++.+.....-++. ..++.|.+.|..|....
T Consensus 24 ~~~s~~~ve~mL~~l~~kG~I~~~---------~~~~~~~~~C~~C~~~~ 64 (69)
T PF09012_consen 24 FGISPEAVEAMLEQLIRKGYIRKV---------DMSSCCGGSCSSCGPAS 64 (69)
T ss_dssp TT--HHHHHHHHHHHHCCTSCEEE---------EEE--SSSSSSS-SS--
T ss_pred HCcCHHHHHHHHHHHHHCCcEEEe---------cCCCCCCCCCCCCCCcc
Confidence 344556667777766532222110 11233446788888766
No 256
>KOG0921|consensus
Probab=28.82 E-value=1.1e+02 Score=30.90 Aligned_cols=87 Identities=23% Similarity=0.338 Sum_probs=53.1
Q ss_pred CCcEEEEecchHHHHHHHHHHHHc-------CCceeeeccCCCchh------------------hhhcccCCCCCCccEE
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNR-------GLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFV 130 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~-------~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~V 130 (234)
.+-+++|-+-=.....|..+|..+ ..+....|+.....+ |.....-+-+.++.+|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 455788888777777777777643 344677777665544 4444445555565555
Q ss_pred EEeecC------------------CCHhHhhhhhcccccCCCceEEEEEee
Q psy4494 131 IHHCLS------------------KSMENFYQESGRAGRDGQIAHCILYYR 163 (234)
Q Consensus 131 i~~~~P------------------~~~~~y~qr~GR~gR~g~~~~~i~~~~ 163 (234)
|.-+.- .+-.+..||.||+||. ++|.|..+-.
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs 772 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCS 772 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccH
Confidence 543221 1344778999999985 3444544433
No 257
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=28.68 E-value=84 Score=29.28 Aligned_cols=65 Identities=17% Similarity=0.261 Sum_probs=40.8
Q ss_pred HHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchH--HHHHHHHHHHHc
Q psy4494 22 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIK--ECEDLREELRNR 99 (234)
Q Consensus 22 ~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~--~~~~l~~~L~~~ 99 (234)
+-.+..|+|-|+++.+++..+|.++..|.+-.++.+.. ...+.+++|++..+ ....+.+.|+..
T Consensus 425 Tdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~--------------g~~G~ai~f~~~~~~~~~~~l~~~l~~~ 490 (518)
T PLN00206 425 TGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRM--------------GEKGTAIVFVNEEDRNLFPELVALLKSS 490 (518)
T ss_pred ecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccC--------------CCCeEEEEEEchhHHHHHHHHHHHHHHc
Confidence 45677899999999999887777665555444433221 12456788875433 455666666654
Q ss_pred C
Q psy4494 100 G 100 (234)
Q Consensus 100 ~ 100 (234)
+
T Consensus 491 ~ 491 (518)
T PLN00206 491 G 491 (518)
T ss_pred C
Confidence 4
No 258
>KOG0336|consensus
Probab=27.38 E-value=80 Score=28.89 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=12.5
Q ss_pred hhhhcccccCCCceEEEE
Q psy4494 143 YQESGRAGRDGQIAHCIL 160 (234)
Q Consensus 143 ~qr~GR~gR~g~~~~~i~ 160 (234)
-.-+-|.||.|+.|..=.
T Consensus 547 eeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 547 EEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred HHHHHHhcccccCCCCcc
Confidence 346788888888885444
No 259
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=27.33 E-value=1.6e+02 Score=26.44 Aligned_cols=37 Identities=8% Similarity=0.123 Sum_probs=29.6
Q ss_pred CcEEEEecchHHHHHHHHHHHH----cCCceeeeccCCCch
Q psy4494 77 QSGIIYTTSIKECEDLREELRN----RGLRVSAYHAKLESN 113 (234)
Q Consensus 77 ~~~iIf~~t~~~~~~l~~~L~~----~~~~~~~~h~~~~~~ 113 (234)
.++||-++|++-|.++++.+.. .++++..++|+.+..
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~ 124 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYD 124 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHH
Confidence 5689999999999998876653 378888999887643
No 260
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=27.27 E-value=2.1e+02 Score=26.56 Aligned_cols=86 Identities=13% Similarity=0.132 Sum_probs=49.5
Q ss_pred CCcEEEEecchHH-----------HHHHHHHHHH-cCCceeeeccCCCchh----hhhcccCCCCCCccEEEEeecCCC-
Q psy4494 76 NQSGIIYTTSIKE-----------CEDLREELRN-RGLRVSAYHAKLESNV----SIAFGLGIDKPNVRFVIHHCLSKS- 138 (234)
Q Consensus 76 ~~~~iIf~~t~~~-----------~~~l~~~L~~-~~~~~~~~h~~~~~~~----T~~~~~Gid~~~v~~Vi~~~~P~~- 138 (234)
-++++|+++|-++ +-.+|++++. +|..|..+-.+++.-. -.++..|=- |.- -+.|.+
T Consensus 201 l~rsvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REisl~~gep-P~~-----~GYPpsv 274 (463)
T PRK09280 201 LDKTALVFGQMNEPPGARLRVALTGLTMAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRM-PSA-----VGYQPTL 274 (463)
T ss_pred cceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEecchHHHHHHHHHHHHhcCCC-Ccc-----cCcCchH
Confidence 4577888776554 7778899998 8999988888877533 122222211 211 134544
Q ss_pred ---HhHhhhhhcccccCCCceEEEEEeecccH
Q psy4494 139 ---MENFYQESGRAGRDGQIAHCILYYRLPDV 167 (234)
Q Consensus 139 ---~~~y~qr~GR~gR~g~~~~~i~~~~~~d~ 167 (234)
+..++.|+|..+...-.+..+++....|+
T Consensus 275 fs~l~~L~ERag~~~~GSITai~tVl~~gdD~ 306 (463)
T PRK09280 275 ATEMGQLQERITSTKKGSITSVQAVYVPADDL 306 (463)
T ss_pred HHHHHHHHHHhcCCCCCceeEEEEEECcCCCC
Confidence 34666787775322223444455555553
No 261
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=26.65 E-value=55 Score=32.56 Aligned_cols=37 Identities=35% Similarity=0.259 Sum_probs=32.5
Q ss_pred hhhcccCCCCCCccEEEEeecCCCHhHhhhhhccccc
Q psy4494 115 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGR 151 (234)
Q Consensus 115 T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR 151 (234)
-.|+-.|-|=|+|=.+.-.....|-.+=.|++||+-|
T Consensus 490 ~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLR 526 (985)
T COG3587 490 KWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLR 526 (985)
T ss_pred hhHHhhcCCCCCeeEEEEecCCCcchHHHHHhcccee
Confidence 5567779999999888888877888899999999998
No 262
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=26.31 E-value=1.8e+02 Score=26.51 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=29.6
Q ss_pred CcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCch
Q psy4494 77 QSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLESN 113 (234)
Q Consensus 77 ~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~ 113 (234)
.++||.++|++-+..+.+.++.. ++.+..++|+.+..
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~ 116 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSIN 116 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHH
Confidence 36899999999999998888753 56777888887654
No 263
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=26.27 E-value=4.6e+02 Score=24.17 Aligned_cols=86 Identities=9% Similarity=0.094 Sum_probs=46.0
Q ss_pred CCcEEEEecchH-----------HHHHHHHHHHH-cCCceeeeccCCCchh----hhhcccCCCCCCccEEEEeecCCCH
Q psy4494 76 NQSGIIYTTSIK-----------ECEDLREELRN-RGLRVSAYHAKLESNV----SIAFGLGIDKPNVRFVIHHCLSKSM 139 (234)
Q Consensus 76 ~~~~iIf~~t~~-----------~~~~l~~~L~~-~~~~~~~~h~~~~~~~----T~~~~~Gid~~~v~~Vi~~~~P~~~ 139 (234)
-++++++++|-+ .+-.+|++++. +|..|..+-.+++.-. -.++.+| ..|.- -+.|.++
T Consensus 195 l~rtvvv~~ts~~~~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DslTR~A~A~REisl~~g-e~P~~-----~GYP~~v 268 (449)
T TIGR03305 195 LDNTVMVFGQMNEPPGARFRVGHTALTMAEYFRDDEKQDVLLLIDNIFRFIQAGSEVSGLLG-QMPSR-----LGYQPTL 268 (449)
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEecChHHHHHHHHHHHHHcC-CCCCc-----cCcCchH
Confidence 356677766544 46677788886 7788887777776533 1222222 11111 1334443
Q ss_pred ----hHhhhhhcccccCCCceEEEEEeecccH
Q psy4494 140 ----ENFYQESGRAGRDGQIAHCILYYRLPDV 167 (234)
Q Consensus 140 ----~~y~qr~GR~gR~g~~~~~i~~~~~~d~ 167 (234)
..++.|+|..+...-.+.-++++...|+
T Consensus 269 fs~l~~L~ERag~~~~GSIT~i~~V~~~~dD~ 300 (449)
T TIGR03305 269 GTELAELEERIATTSDGAITSIQAVYVPADDF 300 (449)
T ss_pred HHHhHHHHHhhcCCCCcCeeEEEEEEccCCCC
Confidence 4667788875322234555555555553
No 264
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=26.15 E-value=1.7e+02 Score=19.18 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=22.6
Q ss_pred cEEEEecchHHHHHHHHHHHHcCCceee
Q psy4494 78 SGIIYTTSIKECEDLREELRNRGLRVSA 105 (234)
Q Consensus 78 ~~iIf~~t~~~~~~l~~~L~~~~~~~~~ 105 (234)
..+|.++|...+-..-+.|++.|+++..
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 4677778888999999999999887543
No 265
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=26.00 E-value=1.6e+02 Score=21.52 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=28.1
Q ss_pred CCCcEEEEecchHH---------HHHHHHHHHH---cCCceeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKE---------CEDLREELRN---RGLRVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~---------~~~l~~~L~~---~~~~~~~~h~~~~ 111 (234)
....+|||+.+-.. +..++..|.. .+.++..+.||+.
T Consensus 74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~ 122 (132)
T cd01446 74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFE 122 (132)
T ss_pred CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHH
Confidence 45789999976654 7778888887 4567888888874
No 266
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=25.96 E-value=94 Score=27.90 Aligned_cols=37 Identities=8% Similarity=0.224 Sum_probs=30.8
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
..++.++||.+-..+...+..|+..|++ +..+.|++.
T Consensus 342 ~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~ 379 (392)
T PRK07878 342 QDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVV 379 (392)
T ss_pred CCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHH
Confidence 4567899999988889999999999985 777888774
No 267
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=25.79 E-value=2.6e+02 Score=22.04 Aligned_cols=82 Identities=17% Similarity=0.197 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHc--CCceeeeccCCCchhhhhcccCCCCCCccEEE-EeecCC
Q psy4494 61 DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR--GLRVSAYHAKLESNVSIAFGLGIDKPNVRFVI-HHCLSK 137 (234)
Q Consensus 61 ~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~T~~~~~Gid~~~v~~Vi-~~~~P~ 137 (234)
+.+..+.+.... .+.++-++=.+...++.+++.|++. ++++..+||-.++++....-.-|+-.+-++|+ -++.|+
T Consensus 35 dl~~~l~~~~~~--~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~VglG~Pk 112 (177)
T TIGR00696 35 DLMEELCQRAGK--EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVGLGCPK 112 (177)
T ss_pred HHHHHHHHHHHH--cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEcCCcH
Confidence 455555554432 2345555557777889999999876 67766778988766534333444444455444 578886
Q ss_pred CHhHhhhh
Q psy4494 138 SMENFYQE 145 (234)
Q Consensus 138 ~~~~y~qr 145 (234)
. +.++++
T Consensus 113 Q-E~~~~~ 119 (177)
T TIGR00696 113 Q-EIWMRN 119 (177)
T ss_pred h-HHHHHH
Confidence 5 334443
No 268
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=25.24 E-value=2.1e+02 Score=26.64 Aligned_cols=39 Identities=15% Similarity=0.126 Sum_probs=29.5
Q ss_pred CCcEEEEecchHH-----------HHHHHHHHHHcCCceeeeccCCCchh
Q psy4494 76 NQSGIIYTTSIKE-----------CEDLREELRNRGLRVSAYHAKLESNV 114 (234)
Q Consensus 76 ~~~~iIf~~t~~~-----------~~~l~~~L~~~~~~~~~~h~~~~~~~ 114 (234)
-.+++|+++|-++ +-.+|++++.+|..+..+..+++.-.
T Consensus 197 l~~tvvV~atad~~~~~r~~ap~~a~aiAEyfr~~G~~VLlv~DdlTr~A 246 (485)
T CHL00059 197 MEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRGRHTLIIYDDLSKQA 246 (485)
T ss_pred hhceEEEEeCCCCCHHHHHHHHHHHhhHHHHHHHcCCCEEEEEcChhHHH
Confidence 4567777766554 56788999988999999888887654
No 269
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=24.93 E-value=1.4e+02 Score=18.91 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=19.3
Q ss_pred EEEEecchHHHHHHHHHHHHcCCceeee
Q psy4494 79 GIIYTTSIKECEDLREELRNRGLRVSAY 106 (234)
Q Consensus 79 ~iIf~~t~~~~~~l~~~L~~~~~~~~~~ 106 (234)
.|..+++.-+++.+...|.+.|+++...
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~ 29 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVK 29 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEE
Confidence 4677888999999999999999987653
No 270
>COG5211 SSU72 RNA polymerase II-interacting protein involved in transcription start site selection [Transcription]
Probab=24.92 E-value=1e+02 Score=24.10 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=35.3
Q ss_pred EecchHHHHHHHHHHHHcCCceeeeccCCCchhhhhcccCCCCCCccEEEEeecCC
Q psy4494 82 YTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHCLSK 137 (234)
Q Consensus 82 f~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~T~~~~~Gid~~~v~~Vi~~~~P~ 137 (234)
-..+.....+.++.|.+.|+++..|-.+-. ...-|..||.|+| .+|+.|-
T Consensus 13 CAsNqNRSMetH~vL~~aGy~V~SfGTgsa---vrLPG~siDKPNv---Y~FG~pY 62 (197)
T COG5211 13 CASNQNRSMETHDVLAKAGYPVKSFGTGSA---VRLPGESIDKPNV---YNFGVPY 62 (197)
T ss_pred eccCCCcchHHHHHHHHcCCcccccCCCcc---eeCCCCCCCCCCe---eecCCcH
Confidence 334455677888999999999876654432 3445778898875 7888885
No 271
>PRK00033 clpS ATP-dependent Clp protease adaptor protein ClpS; Reviewed
Probab=24.71 E-value=2.7e+02 Score=19.93 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=25.7
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCcee
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVS 104 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~ 104 (234)
..++++|..-+++.||..+..|...|+.+.
T Consensus 67 ~~G~avv~~~~~e~AE~~~~~l~~~~L~~~ 96 (100)
T PRK00033 67 NEGKAVVGVCTREVAETKVEQVHQHGLLCT 96 (100)
T ss_pred cCCcEEEEEEcHHHHHHHHHHHHcCCCeEE
Confidence 578899999999999999999987777653
No 272
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=24.70 E-value=1.2e+02 Score=26.95 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=30.1
Q ss_pred CCcEEEEecchHHHHHHHHHHHHcCCc--eeeeccCCC
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNRGLR--VSAYHAKLE 111 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~~~~--~~~~h~~~~ 111 (234)
..+.++||.+=......+..|++.|++ +..+.|++.
T Consensus 332 ~~~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 332 GDNVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred CCcEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 347999999988889999999999986 577778874
No 273
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=24.54 E-value=1.3e+02 Score=21.24 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=22.5
Q ss_pred CCcEEEEecch-----HHHHHHHHHHHHcCC---ceeeeccCCC
Q psy4494 76 NQSGIIYTTSI-----KECEDLREELRNRGL---RVSAYHAKLE 111 (234)
Q Consensus 76 ~~~~iIf~~t~-----~~~~~l~~~L~~~~~---~~~~~h~~~~ 111 (234)
..++|+||.+- ..+..+...|+..|+ ++..+.|++.
T Consensus 66 ~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~ 109 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIK 109 (113)
T ss_pred CCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhh
Confidence 45788889752 335556666666675 4666677764
No 274
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=24.14 E-value=1.9e+02 Score=21.64 Aligned_cols=61 Identities=11% Similarity=0.052 Sum_probs=30.8
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh----hhhcccCCC---CCCccEEEEeec
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----SIAFGLGID---KPNVRFVIHHCL 135 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~----T~~~~~Gid---~~~v~~Vi~~~~ 135 (234)
.+.+++|+|.+.+.++.+-+.|=...-....-|+-..... ...++-+.. .++-+.+||.+.
T Consensus 28 ~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~~~~~PV~i~~~~~~~~~~~~~vLinL~~ 95 (137)
T PF04364_consen 28 QGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEPPAARQPVLITWDQEANPNNHADVLINLSG 95 (137)
T ss_dssp TT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-SSTT--SEEEE-TTS----S--SEEEE--S
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCCCCCCCeEEEecCcccCCCCCCCEEEECCC
Confidence 4789999999999999999998655444444454332221 334444332 233678888753
No 275
>PRK09099 type III secretion system ATPase; Provisional
Probab=23.04 E-value=6e+02 Score=23.38 Aligned_cols=86 Identities=16% Similarity=0.198 Sum_probs=48.4
Q ss_pred CCcEEEEecchH-----------HHHHHHHHHHHcCCceeeeccCCCchh----hhhcccCCCCCCccEEEEeecCCCH-
Q psy4494 76 NQSGIIYTTSIK-----------ECEDLREELRNRGLRVSAYHAKLESNV----SIAFGLGIDKPNVRFVIHHCLSKSM- 139 (234)
Q Consensus 76 ~~~~iIf~~t~~-----------~~~~l~~~L~~~~~~~~~~h~~~~~~~----T~~~~~Gid~~~v~~Vi~~~~P~~~- 139 (234)
-.+++|+++|-+ .+-.+|++++.+|..|..+-.+++.-. ..++..|=- |.- -+.|.++
T Consensus 217 l~rtvvv~~tsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLl~~DslTr~A~A~REisl~~gep-P~~-----~gyP~~vf 290 (441)
T PRK09099 217 MARSVVVCATSDRSSIERAKAAYVATAIAEYFRDRGLRVLLMMDSLTRFARAQREIGLAAGEP-PAR-----RGFPPSVF 290 (441)
T ss_pred cceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCC-Ccc-----ccCCccHH
Confidence 356777766543 455678888888888888887776543 222233322 211 1445554
Q ss_pred ---hHhhhhhcccccCCCceEEEEEeecccH
Q psy4494 140 ---ENFYQESGRAGRDGQIAHCILYYRLPDV 167 (234)
Q Consensus 140 ---~~y~qr~GR~gR~g~~~~~i~~~~~~d~ 167 (234)
..++.|+|+.....-.+..+++++..|+
T Consensus 291 ~~l~~l~ERag~~~~GSIT~i~tVl~~~dd~ 321 (441)
T PRK09099 291 AELPRLLERAGMGETGSITALYTVLAEDESG 321 (441)
T ss_pred HHhHHHHHhhcCCCCcchheeEEEEecCCCc
Confidence 3667777765322234555555555554
No 276
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=23.03 E-value=72 Score=32.35 Aligned_cols=37 Identities=32% Similarity=0.266 Sum_probs=32.6
Q ss_pred hhhcccCCCCCCccEEEEeecCCCHhHhhhhhccccc
Q psy4494 115 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGR 151 (234)
Q Consensus 115 T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR 151 (234)
-.|+..|-|.|+|-.+.-+.-..+...-.|.+||+-|
T Consensus 508 ~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr 544 (986)
T PRK15483 508 KWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLR 544 (986)
T ss_pred hHHhhhcCCCCCeEEEEEeccCCchHHHHHHhcccee
Confidence 4677889999999888888888888899999999988
No 277
>KOG2333|consensus
Probab=22.78 E-value=4.3e+02 Score=24.85 Aligned_cols=99 Identities=10% Similarity=0.149 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHH-HcCCceeeeccCCCchh-hhhccc-------CCCCCCccEEEEeecCCCHhHhhhhhcccccCCCce
Q psy4494 86 IKECEDLREELR-NRGLRVSAYHAKLESNV-SIAFGL-------GIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIA 156 (234)
Q Consensus 86 ~~~~~~l~~~L~-~~~~~~~~~h~~~~~~~-T~~~~~-------Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~ 156 (234)
+..++.|...+. +.|..+..+||.--++. |..+.. --=.+.+.+|-|=|+ -|.++|+-| +.+.+.
T Consensus 405 ~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi-~S~eDw~~~-----~~~~p~ 478 (614)
T KOG2333|consen 405 HPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNGDI-LSWEDWYER-----LNQNPN 478 (614)
T ss_pred chhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecCcc-ccHHHHHHH-----hhcCCC
Confidence 345677777776 67889999999765544 111100 000122555555543 477788777 333333
Q ss_pred EEEEEeecccHHHhhhhHHh--------hhhhhHhHHHHHHHhh
Q psy4494 157 HCILYYRLPDVFKLSSMVFD--------QQTGLANLYNIVSYCL 192 (234)
Q Consensus 157 ~~i~~~~~~d~~~~~~~~~~--------~~~~~~~l~~~~~~~~ 192 (234)
+.-+++....+ ++.|++. ...+-++++.|..|++
T Consensus 479 v~svMIaRGAL--IKPWIFtEIkeqq~wD~sSteRldiL~df~n 520 (614)
T KOG2333|consen 479 VDSVMIARGAL--IKPWIFTEIKEQQHWDISSTERLDILKDFCN 520 (614)
T ss_pred cceEEeecccc--ccchHhhhhhhhhcCCccchHHHHHHHHHHh
Confidence 33333333322 2333333 2345578999999885
No 278
>PF09572 RE_XamI: XamI restriction endonuclease; InterPro: IPR019072 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the XamI restriction endonuclease which recognises GTCGAC but cleavage site unknown. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=22.68 E-value=4.7e+02 Score=22.05 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=12.3
Q ss_pred cCcccHHHHHHhHcCCC
Q psy4494 193 DQTRCRRAIIASYFDEA 209 (234)
Q Consensus 193 ~~~~Crr~~l~~~f~e~ 209 (234)
....+.-..|..||+-.
T Consensus 221 G~~~~~~~~L~G~F~~~ 237 (251)
T PF09572_consen 221 GKNVVFVLFLCGYFKSG 237 (251)
T ss_pred CchhhHHHHHhcccccc
Confidence 34577778888899854
No 279
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=22.65 E-value=1.6e+02 Score=25.53 Aligned_cols=38 Identities=13% Similarity=0.078 Sum_probs=28.3
Q ss_pred CCCcEEEEecch-HHHHHHHHHHHHcCCc-eeeeccCCCc
Q psy4494 75 RNQSGIIYTTSI-KECEDLREELRNRGLR-VSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t~-~~~~~l~~~L~~~~~~-~~~~h~~~~~ 112 (234)
+..++||||.+- ..+.+++..|+..|++ +..+.|++..
T Consensus 102 ~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~ 141 (320)
T PLN02723 102 NKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPK 141 (320)
T ss_pred CCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHH
Confidence 356789998654 3456777889999985 8899998753
No 280
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=22.62 E-value=1.1e+02 Score=26.23 Aligned_cols=77 Identities=6% Similarity=0.179 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------hhhcccCCCCC----
Q psy4494 62 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------SIAFGLGIDKP---- 125 (234)
Q Consensus 62 ~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------T~~~~~Gid~~---- 125 (234)
.+..+..+..+ +.-++||++....-.-...+.+++..-.+..+.|...... ++...||..++
T Consensus 50 tIskI~~lAdD--p~mKaIVv~q~vpGt~~af~kIkekRpDIl~ia~~~~EDp~~i~~~aDi~~~~D~~~~G~~i~~~Ak 127 (275)
T PF12683_consen 50 TISKIVSLADD--PDMKAIVVSQAVPGTAEAFRKIKEKRPDILLIAGEPHEDPEVISSAADIVVNPDEISRGYTIVWAAK 127 (275)
T ss_dssp HHHHHHGGGG---TTEEEEEEE-SS---HHHHHHHHHH-TTSEEEESS--S-HHHHHHHSSEEEE--HHHHHHHHHHHHH
T ss_pred HHHHHHHhccC--CCccEEEEeCCCcchHHHHHHHHhcCCCeEEEcCCCcCCHHHHhhccCeEeccchhhccHHHHHHHH
Confidence 34445444332 4568999999999888888999988777777777765433 44444444442
Q ss_pred --CccEEEEeecCCCHh
Q psy4494 126 --NVRFVIHHCLSKSME 140 (234)
Q Consensus 126 --~v~~Vi~~~~P~~~~ 140 (234)
+....|||.+|+.+.
T Consensus 128 ~mGAktFVh~sfprhms 144 (275)
T PF12683_consen 128 KMGAKTFVHYSFPRHMS 144 (275)
T ss_dssp HTT-S-EEEEEETTGGG
T ss_pred HcCCceEEEEechhhcc
Confidence 356789999999877
No 281
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=22.13 E-value=1.6e+02 Score=28.25 Aligned_cols=38 Identities=13% Similarity=0.043 Sum_probs=30.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCCc
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 112 (234)
+.+++|+||.+=..+-.++-.|+..|++ +..|.|++..
T Consensus 222 ~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~e 260 (610)
T PRK09629 222 PDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGE 260 (610)
T ss_pred CCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHH
Confidence 4568999999877777888888888986 8889888754
No 282
>KOG0339|consensus
Probab=22.11 E-value=4.8e+02 Score=24.83 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=28.8
Q ss_pred cEEEEecchHHHHHHHHHHHH----cCCceeeeccCCCchh
Q psy4494 78 SGIIYTTSIKECEDLREELRN----RGLRVSAYHAKLESNV 114 (234)
Q Consensus 78 ~~iIf~~t~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~ 114 (234)
-++|.|+|++.+..+...-+. .|+.+...||+++.-+
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~e 338 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWE 338 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHH
Confidence 367778999988887765543 4889999999988755
No 283
>KOG1513|consensus
Probab=22.09 E-value=91 Score=31.08 Aligned_cols=40 Identities=33% Similarity=0.244 Sum_probs=31.5
Q ss_pred hhhcccCCCCCCcc--------EEEEeecCCCHhHhhhhhcccccCCC
Q psy4494 115 SIAFGLGIDKPNVR--------FVIHHCLSKSMENFYQESGRAGRDGQ 154 (234)
Q Consensus 115 T~~~~~Gid~~~v~--------~Vi~~~~P~~~~~y~qr~GR~gR~g~ 154 (234)
..|++-||....=+ .=|-..+|++.+.-+|+-||+-|..+
T Consensus 864 SEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQ 911 (1300)
T KOG1513|consen 864 SEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQ 911 (1300)
T ss_pred ehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccc
Confidence 77778888775433 33457999999999999999999654
No 284
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=21.83 E-value=1.6e+02 Score=24.95 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=27.8
Q ss_pred CCCcEEEEecchH-HHHHHHHHHHHcCCc-eeeeccCCCc
Q psy4494 75 RNQSGIIYTTSIK-ECEDLREELRNRGLR-VSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t~~-~~~~l~~~L~~~~~~-~~~~h~~~~~ 112 (234)
+..++||||.+-. .+..++..|...|++ +..|.|++..
T Consensus 86 ~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~ 125 (281)
T PRK11493 86 QDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAG 125 (281)
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHH
Confidence 4567999998643 355677788888886 7788888754
No 285
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=21.62 E-value=4.5e+02 Score=25.05 Aligned_cols=39 Identities=10% Similarity=0.178 Sum_probs=34.6
Q ss_pred CCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV 114 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 114 (234)
.+.+||.++++.-+.+....|+..|+.+..++++.+.++
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~ 103 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQ 103 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHH
Confidence 457999999999999999999999999999999887654
No 286
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=21.36 E-value=3.5e+02 Score=20.03 Aligned_cols=48 Identities=17% Similarity=0.172 Sum_probs=35.1
Q ss_pred HHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCch
Q psy4494 65 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLESN 113 (234)
Q Consensus 65 ~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~ 113 (234)
.+...+.+. ...++|+.++++..++.+...+... +..+..+|++.+..
T Consensus 34 ~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (169)
T PF00270_consen 34 PALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSIS 85 (169)
T ss_dssp HHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHH
T ss_pred HHHhhhccC-CCceEEEEeeccccccccccccccccccccccccccccccccc
Confidence 334444433 4458999999999999999998865 35688888888744
No 287
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=21.23 E-value=82 Score=26.47 Aligned_cols=40 Identities=13% Similarity=0.290 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCc
Q psy4494 61 DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLR 102 (234)
Q Consensus 61 ~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~ 102 (234)
+.+..+.+.|++ +++...+|+++.+++.++...|++.|+.
T Consensus 126 ~~i~~~~~~L~~--~gG~i~~fsP~ieQv~~~~~~L~~~gf~ 165 (247)
T PF08704_consen 126 EAIPHAKRALKK--PGGRICCFSPCIEQVQKTVEALREHGFT 165 (247)
T ss_dssp GGHHHHHHHE-E--EEEEEEEEESSHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHhc--CCceEEEECCCHHHHHHHHHHHHHCCCe
Confidence 456666666621 5788999999999999999999998864
No 288
>KOG0345|consensus
Probab=21.07 E-value=84 Score=29.19 Aligned_cols=63 Identities=21% Similarity=0.263 Sum_probs=39.7
Q ss_pred HHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcC
Q psy4494 22 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRG 100 (234)
Q Consensus 22 ~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~ 100 (234)
+-.+.-|+|-|+|.++++..+|+..+.+..-.++ ..+ ..+.+.+|||.+.++ ++..+.|+-++
T Consensus 314 TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GR-------------TaR-~gr~G~Aivfl~p~E--~aYveFl~i~~ 376 (567)
T KOG0345|consen 314 TDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGR-------------TAR-AGREGNAIVFLNPRE--EAYVEFLRIKG 376 (567)
T ss_pred ehhhhccCCCCCceEEEecCCCCChhHHHhhcch-------------hhh-ccCccceEEEecccH--HHHHHHHHhcC
Confidence 3456778999999999988887755443222111 111 124677999999955 44556666443
No 289
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=21.05 E-value=3e+02 Score=19.87 Aligned_cols=65 Identities=12% Similarity=0.089 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHcCCceeeeccCCCchhhhhcccCCC--CCCccEEEEeecCCCHhHhhhhhcccc
Q psy4494 86 IKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGID--KPNVRFVIHHCLSKSMENFYQESGRAG 150 (234)
Q Consensus 86 ~~~~~~l~~~L~~~~~~~~~~h~~~~~~~T~~~~~Gid--~~~v~~Vi~~~~P~~~~~y~qr~GR~g 150 (234)
.+-...+...|.+.|+++...|-....-.-...-..+. ...+++++.+-.|....+++.+++..|
T Consensus 13 ~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g 79 (116)
T PF13380_consen 13 GKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALG 79 (116)
T ss_dssp TSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcC
Confidence 34578888888888888887765553322000111222 467899999999999999999998875
No 290
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=20.74 E-value=3.1e+02 Score=22.98 Aligned_cols=45 Identities=9% Similarity=0.223 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcCCCcEEEEe-cchHHHHHHHHHHHHcCCceeee
Q psy4494 62 CLDELADLMSRRFRNQSGIIYT-TSIKECEDLREELRNRGLRVSAY 106 (234)
Q Consensus 62 ~~~~l~~~l~~~~~~~~~iIf~-~t~~~~~~l~~~L~~~~~~~~~~ 106 (234)
+-..|..++.......+.|||+ ++.+..+.+.+.+...++...-+
T Consensus 163 KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~ 208 (252)
T PF11019_consen 163 KGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGF 208 (252)
T ss_pred cHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEE
Confidence 3444555554322334467776 77888999999988777664433
No 291
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=20.63 E-value=4e+02 Score=20.68 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHc--CCceee-eccCCCchhhhhcccCCCCCCccEEE-Eeec
Q psy4494 60 KDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR--GLRVSA-YHAKLESNVSIAFGLGIDKPNVRFVI-HHCL 135 (234)
Q Consensus 60 ~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~--~~~~~~-~h~~~~~~~T~~~~~Gid~~~v~~Vi-~~~~ 135 (234)
.+.+..+.+.... ++.++-++-.+.+.++.+++.|++. ++.+.. +||-+..++....-.-|+-.+-++|+ -.+.
T Consensus 32 ~dl~~~ll~~~~~--~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vglG~ 109 (171)
T cd06533 32 SDLMPALLELAAQ--KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFVGLGA 109 (171)
T ss_pred HHHHHHHHHHHHH--cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCC
Confidence 4566666666543 3566666668888889989899876 777665 56666655533333444444555554 4688
Q ss_pred CCC
Q psy4494 136 SKS 138 (234)
Q Consensus 136 P~~ 138 (234)
|..
T Consensus 110 PkQ 112 (171)
T cd06533 110 PKQ 112 (171)
T ss_pred CHH
Confidence 864
No 292
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=20.62 E-value=1.8e+02 Score=19.82 Aligned_cols=29 Identities=7% Similarity=0.190 Sum_probs=22.9
Q ss_pred CCCcEEEEec------chHHHHHHHHHHHHcCCce
Q psy4494 75 RNQSGIIYTT------SIKECEDLREELRNRGLRV 103 (234)
Q Consensus 75 ~~~~~iIf~~------t~~~~~~l~~~L~~~~~~~ 103 (234)
...+++||.. ..-.|..+.+.|.+.++..
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y 40 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDF 40 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCe
Confidence 4568999976 5778889999999887653
No 293
>PRK02362 ski2-like helicase; Provisional
Probab=20.54 E-value=4.3e+02 Score=25.83 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=33.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc---CCceeeeccCCCch
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR---GLRVSAYHAKLESN 113 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~---~~~~~~~h~~~~~~ 113 (234)
+++++++.++++.-+.+.+..++.. |+++..++|+.+..
T Consensus 66 ~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~ 107 (737)
T PRK02362 66 RGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSR 107 (737)
T ss_pred cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcc
Confidence 4678999999999999999988865 78899999987643
No 294
>PF03716 WCCH: WCCH motif ; InterPro: IPR005159 The WCCH motif is found in a retrotransposons and Gemini viruses. A specific function has not been associated to this motif [].
Probab=20.53 E-value=70 Score=16.74 Aligned_cols=11 Identities=36% Similarity=1.144 Sum_probs=8.5
Q ss_pred ccCCCCCCCCCCC
Q psy4494 214 ECRGMCDHCRGGR 226 (234)
Q Consensus 214 ~c~~~Cd~C~~~~ 226 (234)
+| +|++|-+..
T Consensus 5 pC--~cphCprHk 15 (25)
T PF03716_consen 5 PC--CCPHCPRHK 15 (25)
T ss_pred cc--CCCCCcccc
Confidence 46 599998885
No 295
>PRK07478 short chain dehydrogenase; Provisional
Probab=20.52 E-value=4e+02 Score=21.46 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=30.2
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV 114 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 114 (234)
.+.++++..++.+..+.+.+.++..+..+..+..+++..+
T Consensus 29 ~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 68 (254)
T PRK07478 29 EGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEA 68 (254)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHH
Confidence 3556777888888888888888777666777778877655
No 296
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A ....
Probab=20.48 E-value=3.1e+02 Score=22.98 Aligned_cols=46 Identities=9% Similarity=0.263 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccC
Q psy4494 63 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 109 (234)
Q Consensus 63 ~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~ 109 (234)
...+.++.....+....-|-+++...+..+...|...|+++ .+.+.
T Consensus 64 ~~~I~~l~~~~~~~~diAVL~R~~~~~~~i~~~L~~~gIp~-~~~~~ 109 (351)
T PF13361_consen 64 AEEIKELIRNGIPPSDIAVLVRTNSQIKEIEDALKEAGIPY-RISGS 109 (351)
T ss_dssp HHHHHHHHHTTS-GGGEEEEESSGGHHHHHHHHHHHTTS-E-EESSS
T ss_pred HHHHHHHhhcCCCcccEEEEEECchhHHHHHHHHhhhccee-Eeccc
Confidence 33444444334456678888899999999999999999996 34444
No 297
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=20.42 E-value=5.4e+02 Score=21.88 Aligned_cols=49 Identities=29% Similarity=0.388 Sum_probs=37.6
Q ss_pred HHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHc-CCceeeeccCCCchh
Q psy4494 64 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESNV 114 (234)
Q Consensus 64 ~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~ 114 (234)
.++.+.+.+ ++...|+..++++..+++++.|+.. +..+..+--+++..+
T Consensus 20 ~~~A~~lA~--~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~ 69 (265)
T COG0300 20 AELAKQLAR--RGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPE 69 (265)
T ss_pred HHHHHHHHH--CCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChh
Confidence 345555543 5677899999999999999999865 677888888887765
No 298
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=20.20 E-value=4.6e+02 Score=26.70 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCce
Q psy4494 62 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRV 103 (234)
Q Consensus 62 ~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~ 103 (234)
.+..+.+... .+.+++|.|.|....+.+.+.|...++.+
T Consensus 225 ~~~~~~~~~~---~~~~vii~~~s~~~~~~l~~~l~~~~~~~ 263 (926)
T TIGR00580 225 FKEELFRWLK---AGFKITVAAESESQAERLKSLLAEHDIAA 263 (926)
T ss_pred HHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHHHHHCCCCc
Confidence 3444444433 46689999999999999999999988754
No 299
>KOG0340|consensus
Probab=20.08 E-value=2.2e+02 Score=25.62 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=30.9
Q ss_pred CCcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCc
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLES 112 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~ 112 (234)
+--++||++|++-+-.+++.+... +.++..+.|+++.
T Consensus 75 giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~ 115 (442)
T KOG0340|consen 75 GIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDM 115 (442)
T ss_pred cceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHH
Confidence 345899999999999999999854 6778889998775
Done!