Query psy4494
Match_columns 234
No_of_seqs 202 out of 2069
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 18:31:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4494.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4494hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1x_A ATP-dependent DNA helic 100.0 9.6E-37 3.3E-41 283.2 19.8 217 13-234 205-442 (591)
2 1oyw_A RECQ helicase, ATP-depe 100.0 2.5E-33 8.6E-38 257.1 19.9 202 13-226 179-407 (523)
3 2hjv_A ATP-dependent RNA helic 99.9 2.2E-24 7.6E-29 168.7 16.2 126 44-174 8-151 (163)
4 2jgn_A DBX, DDX3, ATP-dependen 99.9 2.5E-24 8.4E-29 172.0 14.0 129 43-175 17-163 (185)
5 2p6n_A ATP-dependent RNA helic 99.9 3.3E-24 1.1E-28 172.2 13.6 124 41-170 25-167 (191)
6 2rb4_A ATP-dependent RNA helic 99.9 9.6E-24 3.3E-28 166.8 14.5 127 43-173 5-155 (175)
7 1fuk_A Eukaryotic initiation f 99.9 1.7E-23 5.7E-28 163.9 15.2 125 45-173 3-145 (165)
8 1t5i_A C_terminal domain of A 99.9 6.5E-24 2.2E-28 167.6 12.9 118 44-166 4-139 (172)
9 3eaq_A Heat resistant RNA depe 99.9 1.3E-23 4.6E-28 171.2 12.5 114 60-174 16-147 (212)
10 2db3_A ATP-dependent RNA helic 99.9 1.1E-22 3.6E-27 182.3 15.2 149 11-165 239-407 (434)
11 3i32_A Heat resistant RNA depe 99.9 1.7E-22 5.7E-27 172.9 13.9 113 60-173 13-143 (300)
12 2i4i_A ATP-dependent RNA helic 99.9 4.2E-22 1.4E-26 176.1 15.3 116 60-175 260-393 (417)
13 3sqw_A ATP-dependent RNA helic 99.9 9.7E-22 3.3E-26 181.9 18.2 114 62-175 274-408 (579)
14 3i5x_A ATP-dependent RNA helic 99.9 6.4E-22 2.2E-26 182.1 15.8 113 63-175 326-459 (563)
15 2yjt_D ATP-dependent RNA helic 99.8 1.4E-23 4.6E-28 165.3 0.0 113 60-173 15-145 (170)
16 2j0s_A ATP-dependent RNA helic 99.9 6.3E-21 2.1E-25 168.4 16.4 112 61-173 262-391 (410)
17 1s2m_A Putative ATP-dependent 99.9 9.1E-21 3.1E-25 166.7 15.0 115 60-175 243-375 (400)
18 3fht_A ATP-dependent RNA helic 99.8 2.8E-20 9.5E-25 163.8 15.1 109 57-166 248-380 (412)
19 3eiq_A Eukaryotic initiation f 99.8 1.3E-20 4.5E-25 166.1 12.5 158 12-173 218-395 (414)
20 3pey_A ATP-dependent RNA helic 99.8 4.5E-20 1.6E-24 161.2 15.4 112 58-170 226-361 (395)
21 4gl2_A Interferon-induced heli 99.8 1E-20 3.5E-25 178.1 11.3 141 76-221 400-594 (699)
22 1xti_A Probable ATP-dependent 99.8 9.6E-20 3.3E-24 159.4 15.9 107 60-167 235-359 (391)
23 1hv8_A Putative ATP-dependent 99.8 6.6E-20 2.3E-24 158.7 13.8 114 59-174 223-354 (367)
24 2ykg_A Probable ATP-dependent 99.8 1.7E-19 6E-24 169.6 10.8 108 61-170 380-521 (696)
25 1tf5_A Preprotein translocase 99.8 2.3E-19 8E-24 169.6 10.9 109 59-167 414-547 (844)
26 3fmp_B ATP-dependent RNA helic 99.8 8.8E-21 3E-25 171.4 0.6 152 11-166 270-447 (479)
27 1fuu_A Yeast initiation factor 99.8 1.4E-20 4.7E-25 164.8 0.9 112 62-174 246-375 (394)
28 3jux_A Protein translocase sub 99.8 1.5E-18 5.2E-23 161.5 11.2 109 59-167 456-589 (822)
29 3fho_A ATP-dependent RNA helic 99.8 4.6E-19 1.6E-23 161.7 6.1 105 60-165 342-470 (508)
30 4a2w_A RIG-I, retinoic acid in 99.8 1.1E-18 3.6E-23 169.7 8.8 107 60-168 612-752 (936)
31 2z0m_A 337AA long hypothetical 99.7 3E-18 1E-22 146.7 8.9 92 75-171 219-328 (337)
32 1c4o_A DNA nucleotide excision 99.7 7.2E-17 2.5E-21 151.6 16.7 98 75-173 438-558 (664)
33 2d7d_A Uvrabc system protein B 99.7 5.1E-17 1.7E-21 152.6 15.3 97 75-172 444-563 (661)
34 2fsf_A Preprotein translocase 99.7 1.7E-17 6E-22 156.6 11.8 110 58-167 422-585 (853)
35 1wp9_A ATP-dependent RNA helic 99.7 3.7E-17 1.3E-21 145.5 11.8 109 60-169 342-479 (494)
36 4a2p_A RIG-I, retinoic acid in 99.7 2.9E-17 9.9E-22 149.9 11.0 108 60-169 371-512 (556)
37 4a4z_A Antiviral helicase SKI2 99.7 1.4E-17 4.6E-22 162.6 8.6 163 61-226 322-578 (997)
38 3oiy_A Reverse gyrase helicase 99.7 3.7E-17 1.3E-21 144.8 9.5 99 63-163 241-363 (414)
39 1nkt_A Preprotein translocase 99.7 7.9E-17 2.7E-21 152.6 12.2 110 59-168 442-620 (922)
40 3o8b_A HCV NS3 protease/helica 99.7 2.8E-17 9.7E-22 153.3 8.8 92 75-169 395-518 (666)
41 3tbk_A RIG-I helicase domain; 99.7 4.8E-17 1.6E-21 148.1 10.1 108 61-170 371-512 (555)
42 2jlq_A Serine protease subunit 99.7 1.5E-16 5E-21 143.2 9.5 88 76-164 188-310 (451)
43 1yks_A Genome polyprotein [con 99.7 2.1E-16 7.1E-21 141.8 10.4 94 75-169 176-306 (440)
44 2xau_A PRE-mRNA-splicing facto 99.7 1.4E-16 4.8E-21 151.8 9.3 104 62-167 290-445 (773)
45 4a2q_A RIG-I, retinoic acid in 99.6 5.5E-16 1.9E-20 148.4 12.0 108 60-169 612-753 (797)
46 2whx_A Serine protease/ntpase/ 99.6 4.1E-16 1.4E-20 145.3 10.0 94 75-169 354-485 (618)
47 2z83_A Helicase/nucleoside tri 99.6 3.5E-16 1.2E-20 141.1 9.1 89 76-165 190-313 (459)
48 1z5z_A Helicase of the SNF2/RA 99.6 7.6E-16 2.6E-20 129.8 8.7 107 60-166 95-225 (271)
49 3l9o_A ATP-dependent RNA helic 99.6 1.1E-15 3.9E-20 150.4 10.2 103 62-165 428-597 (1108)
50 2wv9_A Flavivirin protease NS2 99.6 1.7E-15 5.7E-20 142.3 9.6 92 75-167 409-538 (673)
51 4ddu_A Reverse gyrase; topoiso 99.6 3.1E-16 1.1E-20 154.4 4.3 72 63-137 298-388 (1104)
52 2va8_A SSO2462, SKI2-type heli 99.6 8.4E-15 2.9E-19 138.5 11.4 103 61-166 240-409 (715)
53 2xgj_A ATP-dependent RNA helic 99.6 7E-15 2.4E-19 143.6 11.2 109 63-172 331-507 (1010)
54 3dmq_A RNA polymerase-associat 99.6 6.6E-15 2.3E-19 143.5 10.6 103 59-162 487-610 (968)
55 1gku_B Reverse gyrase, TOP-RG; 99.6 4.6E-15 1.6E-19 145.6 9.3 105 63-170 264-459 (1054)
56 2eyq_A TRCF, transcription-rep 99.6 1.4E-14 4.9E-19 143.2 11.9 91 75-165 811-922 (1151)
57 2p6r_A Afuhel308 helicase; pro 99.5 1.3E-14 4.5E-19 136.9 10.4 104 62-168 231-391 (702)
58 3rc3_A ATP-dependent RNA helic 99.5 1.9E-14 6.5E-19 135.1 10.9 96 77-174 321-453 (677)
59 2v6i_A RNA helicase; membrane, 99.5 1.4E-14 4.6E-19 129.7 9.2 86 76-162 171-288 (431)
60 2zj8_A DNA helicase, putative 99.5 1.4E-14 4.9E-19 137.1 9.4 104 62-168 226-390 (720)
61 1gm5_A RECG; helicase, replica 99.5 2.1E-14 7.1E-19 136.7 7.8 90 75-164 577-696 (780)
62 2fwr_A DNA repair protein RAD2 99.5 3.5E-14 1.2E-18 127.7 8.0 99 61-165 335-454 (472)
63 4f92_B U5 small nuclear ribonu 99.5 3.7E-13 1.3E-17 137.2 14.6 162 12-174 1087-1317(1724)
64 2oca_A DAR protein, ATP-depend 99.5 6.7E-14 2.3E-18 127.1 7.4 88 76-164 348-454 (510)
65 3h1t_A Type I site-specific re 99.5 1.5E-13 5.1E-18 127.2 9.8 90 65-154 428-545 (590)
66 1z63_A Helicase of the SNF2/RA 99.4 3E-13 1E-17 122.5 10.0 106 61-166 325-454 (500)
67 1z3i_X Similar to RAD54-like; 99.4 1.2E-12 4E-17 122.6 12.2 92 75-166 415-529 (644)
68 4f92_B U5 small nuclear ribonu 99.4 7.5E-13 2.6E-17 135.0 11.3 161 13-174 249-482 (1724)
69 3mwy_W Chromo domain-containin 99.3 1.4E-11 4.8E-16 118.0 11.3 105 62-166 557-685 (800)
70 2w00_A HSDR, R.ECOR124I; ATP-b 98.7 6.2E-08 2.1E-12 94.8 10.9 49 115-164 656-708 (1038)
71 2ipc_A Preprotein translocase 98.3 5.1E-06 1.8E-10 79.3 12.4 39 129-167 662-700 (997)
72 2vl7_A XPD; helicase, unknown 97.2 0.00057 2E-08 62.4 7.3 70 63-137 373-463 (540)
73 3hgt_A HDA1 complex subunit 3; 96.2 0.036 1.2E-06 47.2 10.4 106 62-169 113-241 (328)
74 4a15_A XPD helicase, ATP-depen 93.0 0.67 2.3E-05 42.8 10.6 115 75-193 447-611 (620)
75 3gk5_A Uncharacterized rhodane 89.5 0.51 1.7E-05 32.9 4.7 37 75-111 54-90 (108)
76 3g5j_A Putative ATP/GTP bindin 86.8 0.91 3.1E-05 32.4 4.8 35 77-111 90-125 (134)
77 3crv_A XPD/RAD3 related DNA he 86.1 5.8 0.0002 35.8 10.8 60 75-137 392-473 (551)
78 1wv9_A Rhodanese homolog TT165 85.4 0.89 3.1E-05 30.6 3.8 35 77-111 54-88 (94)
79 2jtq_A Phage shock protein E; 84.6 2.6 8.9E-05 27.5 5.9 36 75-111 40-76 (85)
80 1gmx_A GLPE protein; transfera 84.5 1.3 4.5E-05 30.6 4.5 37 75-111 57-94 (108)
81 3foj_A Uncharacterized protein 84.4 0.81 2.8E-05 31.2 3.3 37 75-111 55-91 (100)
82 3flh_A Uncharacterized protein 83.8 0.88 3E-05 32.5 3.4 37 75-111 70-108 (124)
83 3eme_A Rhodanese-like domain p 83.2 0.8 2.7E-05 31.4 2.8 37 75-111 55-91 (103)
84 3iwh_A Rhodanese-like domain p 82.4 0.9 3.1E-05 31.5 2.8 37 75-111 55-91 (103)
85 3hix_A ALR3790 protein; rhodan 82.0 1.5 5E-05 30.3 3.9 37 75-111 51-88 (106)
86 2k0z_A Uncharacterized protein 79.4 2.6 9E-05 29.2 4.5 38 75-112 55-92 (110)
87 3nhv_A BH2092 protein; alpha-b 75.8 2 6.8E-05 31.5 3.1 38 75-112 71-110 (144)
88 1tq1_A AT5G66040, senescence-a 75.7 2.3 7.9E-05 30.4 3.4 37 75-111 81-118 (129)
89 2hhg_A Hypothetical protein RP 75.3 2.2 7.5E-05 30.7 3.2 37 75-111 85-122 (139)
90 2fsx_A RV0390, COG0607: rhodan 74.6 3 0.0001 30.5 3.8 37 75-111 79-116 (148)
91 3d1p_A Putative thiosulfate su 73.7 2.6 8.7E-05 30.5 3.2 37 75-111 90-127 (139)
92 1qxn_A SUD, sulfide dehydrogen 73.3 2.4 8.2E-05 30.8 3.0 37 75-111 81-118 (137)
93 3ilm_A ALR3790 protein; rhodan 72.5 3.5 0.00012 30.1 3.8 37 75-111 55-92 (141)
94 1vee_A Proline-rich protein fa 67.6 4 0.00014 29.3 3.1 37 75-111 73-110 (134)
95 1t6n_A Probable ATP-dependent 65.3 21 0.0007 27.3 7.1 39 76-114 82-125 (220)
96 1urh_A 3-mercaptopyruvate sulf 64.2 12 0.00041 30.3 5.7 38 75-112 229-267 (280)
97 3ber_A Probable ATP-dependent 63.0 36 0.0012 26.8 8.3 40 75-114 110-153 (249)
98 1uar_A Rhodanese; sulfurtransf 61.7 11 0.00039 30.4 5.2 37 75-111 232-270 (285)
99 4f67_A UPF0176 protein LPG2838 57.9 15 0.00051 30.0 5.1 38 75-112 180-218 (265)
100 3tg1_B Dual specificity protei 57.2 7.1 0.00024 28.8 2.9 36 76-111 93-137 (158)
101 1e0c_A Rhodanese, sulfurtransf 56.7 8.1 0.00028 31.1 3.4 37 75-111 222-259 (271)
102 3iuy_A Probable ATP-dependent 55.2 29 0.00099 26.6 6.4 40 75-114 93-135 (228)
103 1vec_A ATP-dependent RNA helic 55.2 57 0.0019 24.3 8.0 40 75-114 70-114 (206)
104 1xti_A Probable ATP-dependent 54.5 33 0.0011 28.5 7.0 38 76-113 76-118 (391)
105 3fe2_A Probable ATP-dependent 53.9 32 0.0011 26.8 6.5 63 76-145 102-169 (242)
106 1qde_A EIF4A, translation init 52.7 42 0.0014 25.5 6.9 39 75-113 81-123 (224)
107 2eg4_A Probable thiosulfate su 52.5 11 0.00037 29.6 3.4 37 75-111 183-219 (230)
108 3aay_A Putative thiosulfate su 50.8 23 0.00079 28.4 5.2 37 75-111 76-114 (277)
109 3ff4_A Uncharacterized protein 50.6 15 0.00051 26.2 3.5 64 87-150 18-82 (122)
110 3aay_A Putative thiosulfate su 49.3 27 0.00091 28.0 5.4 37 75-111 225-263 (277)
111 3hzu_A Thiosulfate sulfurtrans 48.6 15 0.0005 30.6 3.8 38 75-112 258-297 (318)
112 2wlr_A Putative thiosulfate su 47.9 28 0.00097 30.0 5.6 38 75-112 202-240 (423)
113 2gxq_A Heat resistant RNA depe 47.8 52 0.0018 24.5 6.6 40 75-114 71-112 (207)
114 3hzu_A Thiosulfate sulfurtrans 47.1 26 0.00088 29.1 5.1 37 75-111 110-148 (318)
115 1urh_A 3-mercaptopyruvate sulf 46.5 19 0.00066 28.9 4.1 38 75-112 85-124 (280)
116 2oxc_A Probable ATP-dependent 45.7 34 0.0012 26.3 5.4 40 75-114 91-135 (230)
117 3ipz_A Monothiol glutaredoxin- 45.6 50 0.0017 22.4 5.7 29 75-103 16-50 (109)
118 1rhs_A Sulfur-substituted rhod 45.5 21 0.00071 29.1 4.2 37 75-111 239-276 (296)
119 2eg4_A Probable thiosulfate su 45.0 35 0.0012 26.5 5.3 33 76-109 61-95 (230)
120 3oiy_A Reverse gyrase helicase 43.7 60 0.002 27.3 7.0 38 75-112 63-103 (414)
121 2ouc_A Dual specificity protei 43.2 13 0.00043 26.3 2.2 36 76-111 83-127 (142)
122 3ics_A Coenzyme A-disulfide re 43.0 15 0.00051 33.1 3.1 37 75-111 540-576 (588)
123 1uar_A Rhodanese; sulfurtransf 42.9 30 0.001 27.8 4.8 38 75-112 78-117 (285)
124 2eyq_A TRCF, transcription-rep 42.8 23 0.0008 35.1 4.7 69 63-133 374-448 (1151)
125 1e0c_A Rhodanese, sulfurtransf 42.7 28 0.00095 27.8 4.5 38 75-112 80-119 (271)
126 1wrb_A DJVLGB; RNA helicase, D 42.6 66 0.0023 25.0 6.7 38 77-114 101-142 (253)
127 3i2v_A Adenylyltransferase and 42.5 11 0.00039 26.1 1.8 34 78-111 74-114 (127)
128 1wp9_A ATP-dependent RNA helic 41.1 1E+02 0.0035 25.9 8.1 39 75-113 51-93 (494)
129 3ntd_A FAD-dependent pyridine 40.7 20 0.00068 31.9 3.6 37 75-111 523-559 (565)
130 3tbk_A RIG-I helicase domain; 38.6 67 0.0023 27.9 6.7 38 76-113 52-93 (555)
131 3dkp_A Probable ATP-dependent 38.4 42 0.0014 26.0 4.8 35 76-110 98-136 (245)
132 2j6p_A SB(V)-AS(V) reductase; 38.2 40 0.0014 24.5 4.4 47 63-111 56-111 (152)
133 2v1x_A ATP-dependent DNA helic 38.2 49 0.0017 30.0 5.8 40 75-114 83-122 (591)
134 3bor_A Human initiation factor 38.2 94 0.0032 23.9 6.9 38 75-112 97-138 (237)
135 1fuu_A Yeast initiation factor 37.8 93 0.0032 25.6 7.2 39 75-113 88-130 (394)
136 1okg_A Possible 3-mercaptopyru 37.7 24 0.00081 30.1 3.4 37 76-112 246-283 (373)
137 3olh_A MST, 3-mercaptopyruvate 36.4 25 0.00084 28.9 3.2 37 75-111 253-290 (302)
138 1yt8_A Thiosulfate sulfurtrans 36.3 30 0.001 31.0 4.0 38 75-112 321-359 (539)
139 1t3k_A Arath CDC25, dual-speci 35.8 40 0.0014 24.5 4.0 38 75-112 84-131 (152)
140 1q0u_A Bstdead; DEAD protein, 35.3 51 0.0018 25.0 4.8 38 76-113 72-117 (219)
141 2wlr_A Putative thiosulfate su 34.7 45 0.0015 28.7 4.8 37 75-111 357-394 (423)
142 2pl3_A Probable ATP-dependent 33.9 51 0.0017 25.3 4.6 40 75-114 96-139 (236)
143 1s2m_A Putative ATP-dependent 33.6 1.2E+02 0.004 25.1 7.2 38 75-112 88-129 (400)
144 3tp9_A Beta-lactamase and rhod 32.9 26 0.0009 30.6 3.0 37 75-111 426-463 (474)
145 1gm5_A RECG; helicase, replica 31.5 96 0.0033 29.3 6.8 40 75-114 416-459 (780)
146 4a2p_A RIG-I, retinoic acid in 31.4 90 0.0031 27.2 6.3 38 76-113 55-96 (556)
147 2i4i_A ATP-dependent RNA helic 30.9 1.1E+02 0.0036 25.5 6.5 37 77-113 102-142 (417)
148 3zyw_A Glutaredoxin-3; metal b 30.9 1E+02 0.0035 20.9 5.3 29 75-103 14-48 (111)
149 3ly5_A ATP-dependent RNA helic 30.6 1.2E+02 0.0042 23.8 6.5 64 75-145 125-193 (262)
150 1oyw_A RECQ helicase, ATP-depe 29.9 88 0.003 27.7 6.0 39 76-114 65-103 (523)
151 2db3_A ATP-dependent RNA helic 29.1 1.9E+02 0.0066 24.5 7.9 38 76-113 129-170 (434)
152 3fmo_B ATP-dependent RNA helic 28.9 1.4E+02 0.0048 24.1 6.7 37 76-112 162-203 (300)
153 2fz4_A DNA repair protein RAD2 28.6 68 0.0023 25.0 4.5 36 76-111 133-169 (237)
154 2j0s_A ATP-dependent RNA helic 28.3 1.4E+02 0.0048 24.8 6.8 39 75-113 104-146 (410)
155 2fwr_A DNA repair protein RAD2 27.9 53 0.0018 28.3 4.1 39 76-114 133-172 (472)
156 3lyl_A 3-oxoacyl-(acyl-carrier 27.6 2E+02 0.0068 21.9 7.2 59 75-133 28-89 (247)
157 3pey_A ATP-dependent RNA helic 26.8 2.3E+02 0.0079 23.0 7.9 37 75-111 74-114 (395)
158 4a2q_A RIG-I, retinoic acid in 26.3 1.2E+02 0.0041 28.4 6.4 38 76-113 296-337 (797)
159 3hjh_A Transcription-repair-co 25.9 40 0.0014 29.9 2.9 68 63-132 371-444 (483)
160 1rhs_A Sulfur-substituted rhod 25.8 38 0.0013 27.5 2.6 38 75-112 91-132 (296)
161 3chv_A Prokaryotic domain of u 25.2 56 0.0019 26.9 3.5 71 79-149 121-197 (284)
162 3eiq_A Eukaryotic initiation f 25.2 2.4E+02 0.0081 23.2 7.7 38 75-112 107-148 (414)
163 1nbw_B Glycerol dehydratase re 25.0 1.7E+02 0.006 20.5 5.6 61 78-138 7-82 (117)
164 3ucx_A Short chain dehydrogena 24.8 1.8E+02 0.0062 22.6 6.6 59 75-133 34-95 (264)
165 1okg_A Possible 3-mercaptopyru 24.6 55 0.0019 27.8 3.5 38 75-112 94-133 (373)
166 3gx8_A Monothiol glutaredoxin- 24.5 1.3E+02 0.0044 20.8 5.0 35 64-102 7-47 (121)
167 1yt8_A Thiosulfate sulfurtrans 23.7 61 0.0021 28.9 3.7 38 75-112 429-467 (539)
168 2l2r_A Antimicrobial peptide e 23.4 12 0.0004 20.4 -0.6 22 194-215 4-25 (37)
169 3h7a_A Short chain dehydrogena 23.3 1.1E+02 0.0038 23.8 4.9 59 75-133 30-90 (252)
170 2yan_A Glutaredoxin-3; oxidore 22.9 1.6E+02 0.0056 19.3 5.1 37 63-103 7-49 (105)
171 4ddu_A Reverse gyrase; topoiso 22.7 1.5E+02 0.005 29.2 6.5 38 75-112 120-160 (1104)
172 1c25_A CDC25A; hydrolase, cell 22.7 46 0.0016 24.1 2.3 36 76-111 87-136 (161)
173 3qiv_A Short-chain dehydrogena 22.0 1.8E+02 0.0061 22.3 5.9 40 75-114 32-71 (253)
174 8tfv_A Protein (thanatin); bac 21.7 25 0.00087 16.3 0.4 8 79-86 7-14 (21)
175 2lci_A Protein OR36; structura 21.2 2E+02 0.0068 19.4 5.8 70 47-118 24-93 (134)
176 4g81_D Putative hexonate dehyd 21.0 2.3E+02 0.0077 22.5 6.4 40 75-114 32-71 (255)
177 3r2u_A Metallo-beta-lactamase 20.6 21 0.00072 31.3 0.0 37 75-111 424-461 (466)
178 1bi6_H Bromelain inhibitor VI; 20.3 14 0.00049 20.1 -0.7 21 213-233 12-32 (41)
179 3olh_A MST, 3-mercaptopyruvate 20.1 1E+02 0.0034 25.1 4.1 38 75-112 106-147 (302)
No 1
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=9.6e-37 Score=283.19 Aligned_cols=217 Identities=43% Similarity=0.788 Sum_probs=181.0
Q ss_pred hhhccCchh---HHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHHH
Q psy4494 13 LWRTSFYQV---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKEC 89 (234)
Q Consensus 13 l~~at~p~~---~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~ 89 (234)
+++||.+.. .+...++...+. .+ .....+.+.+|.+..++....+++..|.+++.....+.++||||+|++.+
T Consensus 205 ~lSAT~~~~v~~~i~~~l~~~~~~-~~---~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~ 280 (591)
T 2v1x_A 205 GLTATATNHVLTDAQKILCIEKCF-TF---TASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDS 280 (591)
T ss_dssp EEESSCCHHHHHHHHHHTTCCSCE-EE---ECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHH
T ss_pred EEecCCCHHHHHHHHHHhCCCCcE-EE---ecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHH
Confidence 466777664 233344443322 11 22344567889998887777778888988887655678999999999999
Q ss_pred HHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhccccc
Q psy4494 90 EDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGR 151 (234)
Q Consensus 90 ~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR 151 (234)
+.++..|+..|+.+..|||+|++++ |++++||||+|+|++||||++|.++++|+||+||+||
T Consensus 281 e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR 360 (591)
T 2v1x_A 281 EQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGR 360 (591)
T ss_dssp HHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCT
T ss_pred HHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCc
Confidence 9999999999999999999999876 9999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeecccHHHhhhhHHhhhhhhHhHHHHHHHhhcCcccHHHHHHhHcCCCCCCCccCCCCCCCCCCCCCccc
Q psy4494 152 DGQIAHCILYYRLPDVFKLSSMVFDQQTGLANLYNIVSYCLDQTRCRRAIIASYFDEAWSDTECRGMCDHCRGGRRDAKR 231 (234)
Q Consensus 152 ~g~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Crr~~l~~~f~e~~~~~~c~~~Cd~C~~~~~~~~~ 231 (234)
+|++|.++++|++.|...+..++..+....+.+++|..|++++..|||..++.||||...+..|.++||||.... ..+.
T Consensus 361 ~G~~g~~i~l~~~~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Crr~~ll~~f~e~~~~~~c~~~Cd~C~~~~-~~~~ 439 (591)
T 2v1x_A 361 DDMKADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYCQNISKCRRVLMAQHFDEVWNSEACNKMCDNCCKDS-AFER 439 (591)
T ss_dssp TSSCEEEEEEECHHHHHHHHHHTTTSTTHHHHHHHHHHHHTCSSSCHHHHHHHHHTCCC---CCCSCBHHHHCCC-CEEE
T ss_pred CCCCceEEEEEChHHHHHHHHHHhhhhhhHHHHHHHHHHHhcccccHHHHHHHHcCCCCCccccCCCCCCCCCCC-cccc
Confidence 999999999999999999988887777778899999999987889999999999999877677977899999886 4555
Q ss_pred ccC
Q psy4494 232 VDV 234 (234)
Q Consensus 232 ~~~ 234 (234)
.|+
T Consensus 440 ~d~ 442 (591)
T 2v1x_A 440 KNI 442 (591)
T ss_dssp EEC
T ss_pred cch
Confidence 553
No 2
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.5e-33 Score=257.05 Aligned_cols=202 Identities=35% Similarity=0.605 Sum_probs=164.8
Q ss_pred hhhccCchh---HHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHHH
Q psy4494 13 LWRTSFYQV---SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKEC 89 (234)
Q Consensus 13 l~~at~p~~---~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~ 89 (234)
+++||.+.. .+...+++..+.+.. ....+.+.+|.+..+. ++...+.+++... .+.++||||+|++.+
T Consensus 179 ~lSAT~~~~~~~~i~~~l~~~~~~~~~----~~~~r~~l~~~v~~~~----~~~~~l~~~l~~~-~~~~~IVf~~sr~~~ 249 (523)
T 1oyw_A 179 ALTATADDTTRQDIVRLLGLNDPLIQI----SSFDRPNIRYMLMEKF----KPLDQLMRYVQEQ-RGKSGIIYCNSRAKV 249 (523)
T ss_dssp EEESCCCHHHHHHHHHHHTCCSCEEEE----CCCCCTTEEEEEEECS----SHHHHHHHHHHHT-TTCCEEEECSSHHHH
T ss_pred EEeCCCCHHHHHHHHHHhCCCCCeEEe----CCCCCCceEEEEEeCC----CHHHHHHHHHHhc-CCCcEEEEeCCHHHH
Confidence 456776654 345556666554332 2334557778876653 3455666666543 567899999999999
Q ss_pred HHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhccccc
Q psy4494 90 EDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGR 151 (234)
Q Consensus 90 ~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR 151 (234)
+.+++.|+..|+.+..|||++++++ |++++||||+|+|++||||++|.++++|+||+||+||
T Consensus 250 e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR 329 (523)
T 1oyw_A 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGR 329 (523)
T ss_dssp HHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCT
T ss_pred HHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccC
Confidence 9999999999999999999999866 9999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeecccHHHhhhhHHh------hhhhhHhHHHHHHHhhcCcccHHHHHHhHcCCCCCCCccCCCCCCCCCC
Q psy4494 152 DGQIAHCILYYRLPDVFKLSSMVFD------QQTGLANLYNIVSYCLDQTRCRRAIIASYFDEAWSDTECRGMCDHCRGG 225 (234)
Q Consensus 152 ~g~~~~~i~~~~~~d~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~Crr~~l~~~f~e~~~~~~c~~~Cd~C~~~ 225 (234)
+|.+|.+++++++.|......++.. ......++++|..|++ +..|||+.|+.||||... .+| +.||||...
T Consensus 330 ~g~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~~~-~~~crr~~l~~~f~e~~~-~~c-~~cd~c~~~ 406 (523)
T 1oyw_A 330 DGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAE-AQTCRRLVLLNYFGEGRQ-EPC-GNCDICLDP 406 (523)
T ss_dssp TSSCEEEEEEECHHHHHHHHHHHHTSCCSHHHHHHHHHHHHHHHHHT-CSSCHHHHHHHHTTCCCC-SCC-SCBHHHHSC
T ss_pred CCCCceEEEEeCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHh-ccccHhhhhHhhcCCCCC-CCC-CCCCCCCCC
Confidence 9999999999999998888777753 2334568999999996 689999999999999864 468 689999987
Q ss_pred C
Q psy4494 226 R 226 (234)
Q Consensus 226 ~ 226 (234)
+
T Consensus 407 ~ 407 (523)
T 1oyw_A 407 P 407 (523)
T ss_dssp C
T ss_pred c
Confidence 6
No 3
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.92 E-value=2.2e-24 Score=168.67 Aligned_cols=126 Identities=21% Similarity=0.303 Sum_probs=108.8
Q ss_pred CCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh---------
Q psy4494 44 KSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------- 114 (234)
Q Consensus 44 ~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~--------- 114 (234)
..+.++|.... ..+|+..|.+++... .+.++||||+|++.++.++..|...|+.+..+||+|++.+
T Consensus 8 ~~i~~~~~~~~----~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 8 RNIEHAVIQVR----EENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp CCEEEEEEECC----GGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred ccceEEEEECC----hHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 34555555532 356788888888753 6778999999999999999999999999999999998866
Q ss_pred ---------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHHHhhhhH
Q psy4494 115 ---------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMV 174 (234)
Q Consensus 115 ---------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~~ 174 (234)
|+++++|+|+|++++||+||+|.+..+|+||+||+||.|++|.+++|+.+.|...+..+.
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~ 151 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIE 151 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHH
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988876655443
No 4
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.92 E-value=2.5e-24 Score=172.04 Aligned_cols=129 Identities=18% Similarity=0.287 Sum_probs=98.9
Q ss_pred CCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh--------
Q psy4494 43 SKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------- 114 (234)
Q Consensus 43 ~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~-------- 114 (234)
+..+.++|..+. ..+|+..|.+++.....+.++||||+|++.++.++..|+..|+.+..+||++++.+
T Consensus 17 ~~~i~q~~~~v~----~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 17 SENITQKVVWVE----ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp CTTEEEEEEECC----GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred CCCceEEEEEeC----cHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 445556665532 34678888888875435788999999999999999999999999999999998766
Q ss_pred ----------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHHHhhhhHH
Q psy4494 115 ----------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVF 175 (234)
Q Consensus 115 ----------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~~~ 175 (234)
|+++++|+|+|++++||+||+|+++.+|+||+||+||.|++|.+++|+++.|...+..+..
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 163 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 163 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHH
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988766655543
No 5
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.91 E-value=3.3e-24 Score=172.21 Aligned_cols=124 Identities=17% Similarity=0.251 Sum_probs=102.0
Q ss_pred ccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------
Q psy4494 41 CLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------ 114 (234)
Q Consensus 41 ~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------ 114 (234)
.....+.++|.... ..+|+..|.+++.. .+.++||||++++.++.++..|+..|+.+..+||++++++
T Consensus 25 ~~~~~i~q~~~~~~----~~~K~~~L~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~ 98 (191)
T 2p6n_A 25 AASLDVIQEVEYVK----EEAKMVYLLECLQK--TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIE 98 (191)
T ss_dssp ---CCSEEEEEECC----GGGHHHHHHHHHTT--SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHH
T ss_pred CCCcCceEEEEEcC----hHHHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHH
Confidence 34455666665532 34688888888874 3568999999999999999999999999999999999866
Q ss_pred ------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecc-cHHHh
Q psy4494 115 ------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLP-DVFKL 170 (234)
Q Consensus 115 ------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~-d~~~~ 170 (234)
|+++++|+|+|++++||+||+|.+..+|+||+||+||.|++|.+++|+++. +....
T Consensus 99 ~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~ 167 (191)
T 2p6n_A 99 AFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVL 167 (191)
T ss_dssp HHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHH
T ss_pred HHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHH
Confidence 999999999999999999999999999999999999999999999999876 44433
No 6
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=9.6e-24 Score=166.81 Aligned_cols=127 Identities=20% Similarity=0.311 Sum_probs=105.3
Q ss_pred CCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh--------
Q psy4494 43 SKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------- 114 (234)
Q Consensus 43 ~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~-------- 114 (234)
+..+.++|.... ...+|+..|.+++.. ..++++||||++++.++.++..|...|+.+..+||++++.+
T Consensus 5 ~~~i~q~~~~~~---~~~~K~~~L~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f 80 (175)
T 2rb4_A 5 LNNIRQYYVLCE---HRKDKYQALCNIYGS-ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRF 80 (175)
T ss_dssp BCCEEEEEEECS---SHHHHHHHHHHHHTT-SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHH
T ss_pred cCCceEEEEEcC---ChHhHHHHHHHHHHh-CCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 345566666532 234588888888864 36789999999999999999999999999999999999876
Q ss_pred ----------hhhcccCCCCCCccEEEEeecC------CCHhHhhhhhcccccCCCceEEEEEeecccHHHhhhh
Q psy4494 115 ----------SIAFGLGIDKPNVRFVIHHCLS------KSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSM 173 (234)
Q Consensus 115 ----------T~~~~~Gid~~~v~~Vi~~~~P------~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~ 173 (234)
|+++++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.+++++++.+...+..+
T Consensus 81 ~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i 155 (175)
T 2rb4_A 81 RDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKI 155 (175)
T ss_dssp HTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHH
T ss_pred HcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHH
Confidence 9999999999999999999999 9999999999999999999999999998886655443
No 7
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.91 E-value=1.7e-23 Score=163.89 Aligned_cols=125 Identities=26% Similarity=0.363 Sum_probs=102.4
Q ss_pred CcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh----------
Q psy4494 45 SMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---------- 114 (234)
Q Consensus 45 ~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~---------- 114 (234)
.+.++|...... ..|+..|.+++.. ..++++||||+|++.++.++..|...++.+..+||++++.+
T Consensus 3 ~i~~~~~~~~~~---~~K~~~l~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 78 (165)
T 1fuk_A 3 GIKQFYVNVEEE---EYKYECLTDLYDS-ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS 78 (165)
T ss_dssp -CEEEEEEEESG---GGHHHHHHHHHHH-TTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEECCcc---hhHHHHHHHHHHh-CCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 355666665432 2377777777764 36788999999999999999999999999999999999866
Q ss_pred --------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHHHhhhh
Q psy4494 115 --------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSM 173 (234)
Q Consensus 115 --------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~ 173 (234)
|+++++|+|+|++++||+||+|.+..+|+||+||+||.|++|.+++++++.+...+..+
T Consensus 79 g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~ 145 (165)
T 1fuk_A 79 GSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMREL 145 (165)
T ss_dssp TSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHH
T ss_pred CCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887655443
No 8
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=6.5e-24 Score=167.60 Aligned_cols=118 Identities=19% Similarity=0.336 Sum_probs=103.9
Q ss_pred CCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh---------
Q psy4494 44 KSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------- 114 (234)
Q Consensus 44 ~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~--------- 114 (234)
..+.++|.... ..+|+..|.+++.. ..+.++||||++++.++.++..|...|+.+..+||+|++.+
T Consensus 4 ~~i~q~~~~~~----~~~K~~~L~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 78 (172)
T 1t5i_A 4 HGLQQYYVKLK----DNEKNRKLFDLLDV-LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFK 78 (172)
T ss_dssp -CCEEEEEECC----GGGHHHHHHHHHHH-SCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEECC----hHHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHH
Confidence 45566666532 34678888888874 36778999999999999999999999999999999999866
Q ss_pred ---------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeeccc
Q psy4494 115 ---------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPD 166 (234)
Q Consensus 115 ---------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d 166 (234)
|+++++|+|+|++++||+||+|++..+|+||+||+||.|+.|.+++|+++.+
T Consensus 79 ~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 139 (172)
T 1t5i_A 79 DFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 139 (172)
T ss_dssp TTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHH
T ss_pred CCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChh
Confidence 9999999999999999999999999999999999999999999999998764
No 9
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.90 E-value=1.3e-23 Score=171.18 Aligned_cols=114 Identities=25% Similarity=0.412 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccC
Q psy4494 60 KDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 121 (234)
Q Consensus 60 ~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~G 121 (234)
.+++..|.+++... .++++||||+|++.++.++..|...|+.+..+||++++++ |+++++|
T Consensus 16 ~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 94 (212)
T 3eaq_A 16 RGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94 (212)
T ss_dssp TSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCS
T ss_pred HHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcC
Confidence 45777788877643 6789999999999999999999999999999999999876 9999999
Q ss_pred CCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHHHhhhhH
Q psy4494 122 IDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMV 174 (234)
Q Consensus 122 id~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~~ 174 (234)
+|+|+|++|||||+|.+..+|+||+||+||.|++|.+++++++.+...+..+.
T Consensus 95 idi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~ 147 (212)
T 3eaq_A 95 LDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALE 147 (212)
T ss_dssp SSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHH
T ss_pred CCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876665543
No 10
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.89 E-value=1.1e-22 Score=182.33 Aligned_cols=149 Identities=13% Similarity=0.205 Sum_probs=113.3
Q ss_pred HHhhhccCchhHHHHhhCCCCCcEEEEEee--ccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHH
Q psy4494 11 LNLWRTSFYQVSIAFGLGIDKPNVRFVIHH--CLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKE 88 (234)
Q Consensus 11 l~l~~at~p~~~i~~~~~~~~~~i~~~~~~--~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~ 88 (234)
.-+|+||+|..........-...+.+.+.. .....+.+.+... ....+...|.+++... ..++||||+|++.
T Consensus 239 ~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~----~~~~k~~~l~~~l~~~--~~~~lVF~~t~~~ 312 (434)
T 2db3_A 239 TLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEV----NKYAKRSKLIEILSEQ--ADGTIVFVETKRG 312 (434)
T ss_dssp EEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEEC----CGGGHHHHHHHHHHHC--CTTEEEECSSHHH
T ss_pred EEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEe----CcHHHHHHHHHHHHhC--CCCEEEEEeCcHH
Confidence 346889998753322222212223333322 2223333443332 2345677777777653 3459999999999
Q ss_pred HHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccc
Q psy4494 89 CEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAG 150 (234)
Q Consensus 89 ~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~g 150 (234)
++.+++.|...|+.+..+||++++++ |+++++|+|+|+|++|||||+|.+..+|+||+||+|
T Consensus 313 a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~g 392 (434)
T 2db3_A 313 ADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTG 392 (434)
T ss_dssp HHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccc
Confidence 99999999999999999999999876 999999999999999999999999999999999999
Q ss_pred cCCCceEEEEEeecc
Q psy4494 151 RDGQIAHCILYYRLP 165 (234)
Q Consensus 151 R~g~~~~~i~~~~~~ 165 (234)
|.|+.|.+++|+++.
T Consensus 393 R~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 393 RVGNNGRATSFFDPE 407 (434)
T ss_dssp CTTCCEEEEEEECTT
T ss_pred cCCCCCEEEEEEecc
Confidence 999999999999864
No 11
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.89 E-value=1.7e-22 Score=172.94 Aligned_cols=113 Identities=23% Similarity=0.414 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccC
Q psy4494 60 KDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 121 (234)
Q Consensus 60 ~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~G 121 (234)
.+|+..|.+++... .++++||||+|++.++.++..|...|+.+..+||+|++++ |+++++|
T Consensus 13 ~~K~~~L~~ll~~~-~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~G 91 (300)
T 3i32_A 13 RGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARG 91 (300)
T ss_dssp SSHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCS
T ss_pred HHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcC
Confidence 35777788877654 5789999999999999999999999999999999999876 9999999
Q ss_pred CCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHHHhhhh
Q psy4494 122 IDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSM 173 (234)
Q Consensus 122 id~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~ 173 (234)
+|+|+|++|||||+|.+..+|+||+||+||.|++|.+++|+++.+...+..+
T Consensus 92 idi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~i 143 (300)
T 3i32_A 92 LDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEAL 143 (300)
T ss_dssp TTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHH
T ss_pred ccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999886655443
No 12
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.88 E-value=4.2e-22 Score=176.07 Aligned_cols=116 Identities=19% Similarity=0.331 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccC
Q psy4494 60 KDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 121 (234)
Q Consensus 60 ~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~G 121 (234)
.++...+.+++.......++||||+|++.++.+++.|...|+.+..+||++++++ |+++++|
T Consensus 260 ~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 339 (417)
T 2i4i_A 260 SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 339 (417)
T ss_dssp GGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTT
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcC
Confidence 4567777777775445778999999999999999999999999999999999765 9999999
Q ss_pred CCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHHHhhhhHH
Q psy4494 122 IDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVF 175 (234)
Q Consensus 122 id~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~~~ 175 (234)
+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++.|......+..
T Consensus 340 idip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~ 393 (417)
T 2i4i_A 340 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLD 393 (417)
T ss_dssp SCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHH
T ss_pred CCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988776665553
No 13
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.88 E-value=9.7e-22 Score=181.93 Aligned_cols=114 Identities=21% Similarity=0.336 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHc---CCceeeeccCCCchh------------------hhhccc
Q psy4494 62 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR---GLRVSAYHAKLESNV------------------SIAFGL 120 (234)
Q Consensus 62 ~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~------------------T~~~~~ 120 (234)
.+..+...+.....+.++||||+|++.++.++..|+.. ++.+..+||+|++++ |+++++
T Consensus 274 ~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~ 353 (579)
T 3sqw_A 274 AVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGAR 353 (579)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTS
T ss_pred HHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhc
Confidence 34455555554345779999999999999999999987 899999999999876 999999
Q ss_pred CCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHHHhhhhHH
Q psy4494 121 GIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVF 175 (234)
Q Consensus 121 Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~~~ 175 (234)
|+|+|+|++||+|++|.++.+|+||+||+||+|+.|.+++++.+.|...+..+..
T Consensus 354 GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~ 408 (579)
T 3sqw_A 354 GMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELED 408 (579)
T ss_dssp SCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHH
T ss_pred CCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999877766643
No 14
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.88 E-value=6.4e-22 Score=182.09 Aligned_cols=113 Identities=21% Similarity=0.337 Sum_probs=100.3
Q ss_pred HHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHc---CCceeeeccCCCchh------------------hhhcccC
Q psy4494 63 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR---GLRVSAYHAKLESNV------------------SIAFGLG 121 (234)
Q Consensus 63 ~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~------------------T~~~~~G 121 (234)
+..+...+.....+.++||||+|++.++.++..|... ++.+..+||+|++++ |+++++|
T Consensus 326 ~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 405 (563)
T 3i5x_A 326 VEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARG 405 (563)
T ss_dssp HHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSS
T ss_pred HHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcC
Confidence 4444455544346779999999999999999999987 899999999999876 9999999
Q ss_pred CCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHHHhhhhHH
Q psy4494 122 IDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVF 175 (234)
Q Consensus 122 id~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~~~ 175 (234)
+|+|+|++||+||+|.++.+|+||+||+||.|+.|.+++++.+.|...+..+..
T Consensus 406 iDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~ 459 (563)
T 3i5x_A 406 MDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELED 459 (563)
T ss_dssp CCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHH
T ss_pred CCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887776653
No 15
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.78 E-value=1.4e-23 Score=165.27 Aligned_cols=113 Identities=19% Similarity=0.298 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccC
Q psy4494 60 KDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 121 (234)
Q Consensus 60 ~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~G 121 (234)
.+++..|.+++.. ..+.++||||++++.++.++..|+..|+.+..+||++++.+ |+++++|
T Consensus 15 ~~k~~~l~~ll~~-~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 93 (170)
T 2yjt_D 15 EHKTALLVHLLKQ-PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARG 93 (170)
Confidence 3466677777764 35678999999999999999999999999999999998766 9999999
Q ss_pred CCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHHHhhhh
Q psy4494 122 IDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSM 173 (234)
Q Consensus 122 id~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~ 173 (234)
+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++++.+.|...+..+
T Consensus 94 id~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 145 (170)
T 2yjt_D 94 IDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 145 (170)
Confidence 9999999999999999999999999999999999999999988776654443
No 16
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.86 E-value=6.3e-21 Score=168.43 Aligned_cols=112 Identities=23% Similarity=0.390 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCC
Q psy4494 61 DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGI 122 (234)
Q Consensus 61 ~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gi 122 (234)
.+...+.+++... ...++||||+|++.++.+++.|...|+.+..+||++++++ |+++++|+
T Consensus 262 ~k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 340 (410)
T 2j0s_A 262 WKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGL 340 (410)
T ss_dssp HHHHHHHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSC
T ss_pred hHHHHHHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcC
Confidence 3566666666543 5678999999999999999999999999999999999765 99999999
Q ss_pred CCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHHHhhhh
Q psy4494 123 DKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSM 173 (234)
Q Consensus 123 d~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~ 173 (234)
|+|++++||+||+|.+...|+||+||+||.|++|.+++|+++.|...+..+
T Consensus 341 di~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i 391 (410)
T 2j0s_A 341 DVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 391 (410)
T ss_dssp CCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHH
T ss_pred CcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887665543
No 17
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.85 E-value=9.1e-21 Score=166.74 Aligned_cols=115 Identities=26% Similarity=0.374 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccC
Q psy4494 60 KDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 121 (234)
Q Consensus 60 ~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~G 121 (234)
..+...+..++.. ...+++||||++++.++.+++.|...|+.+..+||++++++ |+++++|
T Consensus 243 ~~k~~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 321 (400)
T 1s2m_A 243 RQKLHCLNTLFSK-LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRG 321 (400)
T ss_dssp GGHHHHHHHHHHH-SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSS
T ss_pred hhHHHHHHHHHhh-cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccC
Confidence 4466666676654 36678999999999999999999999999999999999865 9999999
Q ss_pred CCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHHHhhhhHH
Q psy4494 122 IDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVF 175 (234)
Q Consensus 122 id~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~~~ 175 (234)
+|+|++++||+|++|.+..+|+||+||+||.|++|.+++++++.|...+..+.+
T Consensus 322 idip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~ 375 (400)
T 1s2m_A 322 IDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQ 375 (400)
T ss_dssp CCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHH
T ss_pred CCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998776655543
No 18
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.84 E-value=2.8e-20 Score=163.78 Aligned_cols=109 Identities=20% Similarity=0.285 Sum_probs=97.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhc
Q psy4494 57 AAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAF 118 (234)
Q Consensus 57 ~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~ 118 (234)
.....+...+.+++... ..+++||||+|++.++.++..|...++.+..+||++++++ |+++
T Consensus 248 ~~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 326 (412)
T 3fht_A 248 SSRDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVC 326 (412)
T ss_dssp SSHHHHHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGG
T ss_pred CChHHHHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCcc
Confidence 33456777777777643 5678999999999999999999999999999999999866 9999
Q ss_pred ccCCCCCCccEEEEeecC------CCHhHhhhhhcccccCCCceEEEEEeeccc
Q psy4494 119 GLGIDKPNVRFVIHHCLS------KSMENFYQESGRAGRDGQIAHCILYYRLPD 166 (234)
Q Consensus 119 ~~Gid~~~v~~Vi~~~~P------~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d 166 (234)
++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.+++++++.+
T Consensus 327 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 327 ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp TSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred ccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChh
Confidence 999999999999999999 567899999999999999999999998765
No 19
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=166.13 Aligned_cols=158 Identities=22% Similarity=0.304 Sum_probs=105.9
Q ss_pred HhhhccCchhHHHHhhCCCCCcEEEEEe--eccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHHH
Q psy4494 12 NLWRTSFYQVSIAFGLGIDKPNVRFVIH--HCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKEC 89 (234)
Q Consensus 12 ~l~~at~p~~~i~~~~~~~~~~i~~~~~--~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~ 89 (234)
-+++||.|..........-...+.+... ......+..+|.... ....++..+.+++.. ...+++||||++++.+
T Consensus 218 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~-~~~~~~lvf~~~~~~~ 293 (414)
T 3eiq_A 218 VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVE---REEWKLDTLCDLYET-LTITQAVIFINTRRKV 293 (414)
T ss_dssp EEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECS---SSTTHHHHHHHHHHS-SCCSSCEEECSCHHHH
T ss_pred EEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeC---hHHhHHHHHHHHHHh-CCCCcEEEEeCCHHHH
Confidence 3567887765332222222222222221 222333344443322 223466677777764 3567899999999999
Q ss_pred HHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhccccc
Q psy4494 90 EDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGR 151 (234)
Q Consensus 90 ~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR 151 (234)
+.+++.|...++.+..+||++++++ |+++++|+|+|++++||+|++|.+..+|+||+||+||
T Consensus 294 ~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR 373 (414)
T 3eiq_A 294 DWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 373 (414)
T ss_dssp HHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC--
T ss_pred HHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccC
Confidence 9999999999999999999998765 9999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeecccHHHhhhh
Q psy4494 152 DGQIAHCILYYRLPDVFKLSSM 173 (234)
Q Consensus 152 ~g~~~~~i~~~~~~d~~~~~~~ 173 (234)
.|++|.+++++++.|...+..+
T Consensus 374 ~g~~g~~~~~~~~~~~~~~~~~ 395 (414)
T 3eiq_A 374 FGRKGVAINMVTEEDKRTLRDI 395 (414)
T ss_dssp -----CEEEEECSTHHHHHHHH
T ss_pred CCCCceEEEEEcHHHHHHHHHH
Confidence 9999999999999887665544
No 20
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.84 E-value=4.5e-20 Score=161.22 Aligned_cols=112 Identities=26% Similarity=0.411 Sum_probs=98.6
Q ss_pred ChHHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcc
Q psy4494 58 AQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFG 119 (234)
Q Consensus 58 ~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~ 119 (234)
....+...+..++.. ...+++||||++++.++.+++.|+..++.+..+||++++++ |++++
T Consensus 226 ~~~~~~~~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 304 (395)
T 3pey_A 226 NEADKFDVLTELYGL-MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLA 304 (395)
T ss_dssp SHHHHHHHHHHHHTT-TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGS
T ss_pred chHHHHHHHHHHHHh-ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhh
Confidence 345566666666653 35688999999999999999999999999999999999866 99999
Q ss_pred cCCCCCCccEEEEeecCC------CHhHhhhhhcccccCCCceEEEEEeecccHHHh
Q psy4494 120 LGIDKPNVRFVIHHCLSK------SMENFYQESGRAGRDGQIAHCILYYRLPDVFKL 170 (234)
Q Consensus 120 ~Gid~~~v~~Vi~~~~P~------~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~ 170 (234)
+|+|+|++++||+||+|. +..+|+||+||+||.|+.|.+++++.+.+....
T Consensus 305 ~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~ 361 (395)
T 3pey_A 305 RGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNI 361 (395)
T ss_dssp SSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHH
T ss_pred cCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHH
Confidence 999999999999999999 999999999999999999999999987654433
No 21
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=178.14 Aligned_cols=141 Identities=17% Similarity=0.191 Sum_probs=93.6
Q ss_pred CCcEEEEecchHHHHHHHHHHHHc------CCceeeeccC--------CCchh------------------hhhcccCCC
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNR------GLRVSAYHAK--------LESNV------------------SIAFGLGID 123 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~------~~~~~~~h~~--------~~~~~------------------T~~~~~Gid 123 (234)
+.++||||++++.++.+++.|... |+++..+||+ |++++ |+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 689999999999999999999987 8999999999 88876 999999999
Q ss_pred CCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHHHh--------hhhHHh--------------hhhhh
Q psy4494 124 KPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKL--------SSMVFD--------------QQTGL 181 (234)
Q Consensus 124 ~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~--------~~~~~~--------------~~~~~ 181 (234)
+|+|++|||||+|+++.+|+||+|||||.| +..+++....+.... ..++.. .....
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 557 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGSGVIERETVNDFREKMMYKAIHCVQNMKPEEYAHKILE 557 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCchHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 999999999999999999999999988776 334444443321111 011000 01112
Q ss_pred HhHHHHHHHhhcCcccHHHHHHhHcCCCCCCCccCCCCCC
Q psy4494 182 ANLYNIVSYCLDQTRCRRAIIASYFDEAWSDTECRGMCDH 221 (234)
Q Consensus 182 ~~l~~~~~~~~~~~~Crr~~l~~~f~e~~~~~~c~~~Cd~ 221 (234)
..++++..+.. ...|++..++.||++... ..| +.||+
T Consensus 558 ~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~c-~~c~~ 594 (699)
T 4gl2_A 558 LQMQSIMEKKM-KTKRNIAKHYKNNPSLIT-FLC-KNCSV 594 (699)
T ss_dssp HHHHHHHHCCS-CCC----------CCSEE-EEE-SSSCC
T ss_pred HHHHHHHHHHH-HHhhhHHhhhhcCcceeE-EEC-CCCCc
Confidence 34567777774 678999999999998743 234 45553
No 22
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.83 E-value=9.6e-20 Score=159.42 Aligned_cols=107 Identities=20% Similarity=0.322 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccC
Q psy4494 60 KDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 121 (234)
Q Consensus 60 ~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~G 121 (234)
.++...+.+++.. ...+++||||++++.++.+++.|...|+.+..+||++++++ |+++++|
T Consensus 235 ~~~~~~l~~~l~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 313 (391)
T 1xti_A 235 NEKNRKLFDLLDV-LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 313 (391)
T ss_dssp GGHHHHHHHHHHH-SCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSC
T ss_pred hhHHHHHHHHHHh-cCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcC
Confidence 4466667777764 36789999999999999999999999999999999998765 9999999
Q ss_pred CCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccH
Q psy4494 122 IDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDV 167 (234)
Q Consensus 122 id~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~ 167 (234)
+|+|++++||+|++|.+..+|+||+||+||.|++|.+++++++.+.
T Consensus 314 idi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 359 (391)
T 1xti_A 314 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND 359 (391)
T ss_dssp BCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHH
T ss_pred CCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccch
Confidence 9999999999999999999999999999999999999999987654
No 23
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.82 E-value=6.6e-20 Score=158.66 Aligned_cols=114 Identities=22% Similarity=0.418 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhccc
Q psy4494 59 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGL 120 (234)
Q Consensus 59 ~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~ 120 (234)
..+++..+.+++.. ...++||||+|++.++.+++.|+..++.+..+||++++++ |+++++
T Consensus 223 ~~~~~~~l~~~l~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~ 300 (367)
T 1hv8_A 223 ENERFEALCRLLKN--KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSR 300 (367)
T ss_dssp GGGHHHHHHHHHCS--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHH
T ss_pred hHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhc
Confidence 34567777777763 5678999999999999999999999999999999998865 999999
Q ss_pred CCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHHHhhhhH
Q psy4494 121 GIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMV 174 (234)
Q Consensus 121 Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~~ 174 (234)
|+|+|++++||++++|.+..+|+||+||+||.|++|.+++++++.|...+..+.
T Consensus 301 Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~ 354 (367)
T 1hv8_A 301 GIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIE 354 (367)
T ss_dssp HCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHH
T ss_pred CCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998887665544
No 24
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.79 E-value=1.7e-19 Score=169.64 Aligned_cols=108 Identities=17% Similarity=0.260 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhhc---CCCcEEEEecchHHHHHHHHHHHHcC----Cceeeec--------cCCCchh-----------
Q psy4494 61 DCLDELADLMSRRF---RNQSGIIYTTSIKECEDLREELRNRG----LRVSAYH--------AKLESNV----------- 114 (234)
Q Consensus 61 ~~~~~l~~~l~~~~---~~~~~iIf~~t~~~~~~l~~~L~~~~----~~~~~~h--------~~~~~~~----------- 114 (234)
.++..|.+++...+ .+.++||||++++.++.+++.|+..+ +++..+| |+|++++
T Consensus 380 ~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~ 459 (696)
T 2ykg_A 380 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 459 (696)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC----------------------------
T ss_pred HHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhc
Confidence 46777777776542 46789999999999999999999988 8899995 4887654
Q ss_pred --------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHHHh
Q psy4494 115 --------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKL 170 (234)
Q Consensus 115 --------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~ 170 (234)
|+++++|||+|+|++||+||+|.+..+|+||+|| ||. ++|.++++++..+....
T Consensus 460 g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 460 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp -CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHH
T ss_pred CCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHH
Confidence 9999999999999999999999999999999999 998 78999999998776443
No 25
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.79 E-value=2.3e-19 Score=169.55 Aligned_cols=109 Identities=21% Similarity=0.246 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHHHhh-cCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh----------------hhhcccC
Q psy4494 59 QKDCLDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLG 121 (234)
Q Consensus 59 ~~~~~~~l~~~l~~~-~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~----------------T~~~~~G 121 (234)
..+|...|.+.+... ..++++||||+|++.++.|+..|...|+++..+||++.+.+ |+.+|||
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIATdmAgRG 493 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGAVTIATNMAGRG 493 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTTCEEEEETTSSTT
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCCeEEEeCCccccC
Confidence 456777787777542 24678999999999999999999999999999999987665 9999999
Q ss_pred CCCC--------CccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccH
Q psy4494 122 IDKP--------NVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDV 167 (234)
Q Consensus 122 id~~--------~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~ 167 (234)
+|++ ++.+||||+.|.+...|+||+||+||+|++|.+++|++..|.
T Consensus 494 ~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 494 TDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp CCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred cCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 9999 788999999999999999999999999999999999998764
No 26
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.79 E-value=8.8e-21 Score=171.40 Aligned_cols=152 Identities=18% Similarity=0.277 Sum_probs=11.6
Q ss_pred HHhhhccCchhHHHHhhC-C-CCCcEEEEEeeccCCCcceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHH
Q psy4494 11 LNLWRTSFYQVSIAFGLG-I-DKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKE 88 (234)
Q Consensus 11 l~l~~at~p~~~i~~~~~-~-~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~ 88 (234)
+-+++||++.....+... . ++..+.+.........+..+|..... ...+...+..++.. ....++||||+|++.
T Consensus 270 ~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~-~~~~~~lvF~~s~~~ 345 (479)
T 3fmp_B 270 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS---RDEKFQALCNLYGA-ITIAQAMIFCHTRKT 345 (479)
T ss_dssp EEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------------------------------------
T ss_pred EEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCC---HHHHHHHHHHHHhh-ccCCceEEEeCcHHH
Confidence 345788888753222221 2 22222222222223333344433222 22345555555543 246789999999999
Q ss_pred HHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCC------CHhHhhh
Q psy4494 89 CEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSK------SMENFYQ 144 (234)
Q Consensus 89 ~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~------~~~~y~q 144 (234)
++.++..|...++.+..+||++++++ |+++++|+|+|+|++||+||+|. +..+|+|
T Consensus 346 ~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Q 425 (479)
T 3fmp_B 346 ASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLH 425 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHH
Confidence 99999999999999999999998866 99999999999999999999994 6689999
Q ss_pred hhcccccCCCceEEEEEeeccc
Q psy4494 145 ESGRAGRDGQIAHCILYYRLPD 166 (234)
Q Consensus 145 r~GR~gR~g~~~~~i~~~~~~d 166 (234)
|+||+||.|+.|.+++|+++.+
T Consensus 426 r~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 426 RIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp ----------------------
T ss_pred HhcccccCCCCceEEEEEcCcc
Confidence 9999999999999999998765
No 27
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.78 E-value=1.4e-20 Score=164.81 Aligned_cols=112 Identities=27% Similarity=0.369 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCC
Q psy4494 62 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGID 123 (234)
Q Consensus 62 ~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid 123 (234)
+...+.+++.. ....++||||++++.++.+++.|+..++.+..+||++++++ |+++++|+|
T Consensus 246 ~~~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gld 324 (394)
T 1fuu_A 246 KYECLTDLYDS-ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGID 324 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhc-CCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCC
Confidence 34445555543 35678999999999999999999999999999999998765 999999999
Q ss_pred CCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHHHhhhhH
Q psy4494 124 KPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMV 174 (234)
Q Consensus 124 ~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~~ 174 (234)
+|++++||+|++|.+..+|+||+||+||.|++|.+++++++.|...+..+.
T Consensus 325 i~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 375 (394)
T 1fuu_A 325 VQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELE 375 (394)
T ss_dssp ---------------------------------------------------
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999998876655443
No 28
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.76 E-value=1.5e-18 Score=161.46 Aligned_cols=109 Identities=27% Similarity=0.351 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHHhhc-CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh----------------hhhcccC
Q psy4494 59 QKDCLDELADLMSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLG 121 (234)
Q Consensus 59 ~~~~~~~l~~~l~~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~----------------T~~~~~G 121 (234)
..++...+.+.+.... .++++||||+|++.++.++..|...|+++..+||+..+.+ |+.+|||
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g~VtVATdmAgRG 535 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKGMVTIATNMAGRG 535 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTTCEEEEETTTTTT
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCCeEEEEcchhhCC
Confidence 4567888888776432 4788999999999999999999999999999999966544 9999999
Q ss_pred CCCC--------CccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccH
Q psy4494 122 IDKP--------NVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDV 167 (234)
Q Consensus 122 id~~--------~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~ 167 (234)
+|++ ++.+|||+++|.+...|.||+||+||+|.+|.+++|++..|.
T Consensus 536 tDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 536 TDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp CCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred cCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 9998 666999999999999999999999999999999999999873
No 29
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.75 E-value=4.6e-19 Score=161.71 Aligned_cols=105 Identities=19% Similarity=0.332 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccC
Q psy4494 60 KDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLG 121 (234)
Q Consensus 60 ~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~G 121 (234)
..+...+..++.. ...+++||||++++.++.++..|.+.++.+..+||++++++ |+++++|
T Consensus 342 ~~k~~~l~~ll~~-~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~G 420 (508)
T 3fho_A 342 EHKYNVLVELYGL-LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARG 420 (508)
T ss_dssp HHHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----
T ss_pred HHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcC
Confidence 4456666666653 35688999999999999999999999999999999998765 9999999
Q ss_pred CCCCCccEEEEeecC------CCHhHhhhhhcccccCCCceEEEEEeecc
Q psy4494 122 IDKPNVRFVIHHCLS------KSMENFYQESGRAGRDGQIAHCILYYRLP 165 (234)
Q Consensus 122 id~~~v~~Vi~~~~P------~~~~~y~qr~GR~gR~g~~~~~i~~~~~~ 165 (234)
+|+|++++||+++.| .++.+|+||+||+||.|++|.+++|+.+.
T Consensus 421 iDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 421 IDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred CCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 999999999999999 78999999999999999999999999854
No 30
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.75 E-value=1.1e-18 Score=169.71 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhh---cCCCcEEEEecchHHHHHHHHHHHHc------------CCceeeeccCCCchh----------
Q psy4494 60 KDCLDELADLMSRR---FRNQSGIIYTTSIKECEDLREELRNR------------GLRVSAYHAKLESNV---------- 114 (234)
Q Consensus 60 ~~~~~~l~~~l~~~---~~~~~~iIf~~t~~~~~~l~~~L~~~------------~~~~~~~h~~~~~~~---------- 114 (234)
..++..|.+++.+. ..+.++||||++++.++.++..|... |.....+||+|++.+
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~ 691 (936)
T 4a2w_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (936)
T ss_dssp CHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC--------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhc
Confidence 44677777777653 24689999999999999999999986 555566688888765
Q ss_pred ---------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHH
Q psy4494 115 ---------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVF 168 (234)
Q Consensus 115 ---------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~ 168 (234)
|+++++|||+|+|++|||||+|+++.+|+||+|| ||. ++|.++++++..+..
T Consensus 692 ~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 692 SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp --CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred cCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 9999999999999999999999999999999999 999 778899999886553
No 31
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.74 E-value=3e-18 Score=146.67 Aligned_cols=92 Identities=17% Similarity=0.302 Sum_probs=83.8
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLS 136 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P 136 (234)
.++++||||++++.++.+++.|. .+..+||+++.++ |+++++|+|+|++++||+|++|
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~ 294 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAP 294 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCC
Confidence 57889999999999999999886 5889999998866 9999999999999999999999
Q ss_pred CCHhHhhhhhcccccCCCceEEEEEeecccHHHhh
Q psy4494 137 KSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLS 171 (234)
Q Consensus 137 ~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~ 171 (234)
.+..+|+||+||+||.|++|.+++|+. .+.....
T Consensus 295 ~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~ 328 (337)
T 2z0m_A 295 QDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEK 328 (337)
T ss_dssp SSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHH
T ss_pred CCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHH
Confidence 999999999999999999999999998 5554433
No 32
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.73 E-value=7.2e-17 Score=151.60 Aligned_cols=98 Identities=21% Similarity=0.280 Sum_probs=88.7
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeec-
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCL- 135 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~- 135 (234)
.+.++||||+|++.++.++..|...|+.+..+||++++.+ |+++++|+|+|+|++||++|.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 4679999999999999999999999999999999998655 899999999999999999997
Q ss_pred ----CCCHhHhhhhhcccccCCCceEEEEEeecccHHHhhhh
Q psy4494 136 ----SKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSM 173 (234)
Q Consensus 136 ----P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~ 173 (234)
|.+..+|+||+||+||.+ +|.+++|+++.+......+
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i 558 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAI 558 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHH
T ss_pred ccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHH
Confidence 999999999999999995 7999999988776554443
No 33
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.73 E-value=5.1e-17 Score=152.56 Aligned_cols=97 Identities=25% Similarity=0.299 Sum_probs=88.4
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeec-
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCL- 135 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~- 135 (234)
.+.++||||+|++.++.++..|...|+++..+||++++.+ |+++++|+|+|+|++||++|.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 4678999999999999999999999999999999998655 899999999999999999998
Q ss_pred ----CCCHhHhhhhhcccccCCCceEEEEEeecccHHHhhh
Q psy4494 136 ----SKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSS 172 (234)
Q Consensus 136 ----P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~ 172 (234)
|.+..+|+||+||+||. .+|.+++|+++.+......
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~ 563 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIA 563 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHH
T ss_pred cccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHH
Confidence 99999999999999998 7899999999877654443
No 34
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.72 E-value=1.7e-17 Score=156.61 Aligned_cols=110 Identities=24% Similarity=0.317 Sum_probs=98.2
Q ss_pred ChHHHHHHHHHHHHhh-cCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh----------------hhhccc
Q psy4494 58 AQKDCLDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGL 120 (234)
Q Consensus 58 ~~~~~~~~l~~~l~~~-~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~----------------T~~~~~ 120 (234)
...+|...|.+.+... ..++++||||+|++.++.|+..|...|+++..+||.+.+.+ |+.+||
T Consensus 422 ~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G~VtIATnmAgR 501 (853)
T 2fsf_A 422 TEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAAVTIATNMAGR 501 (853)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTTCEEEEESCCSS
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCCeEEEecccccC
Confidence 3567888888877543 35678999999999999999999999999999999987655 999999
Q ss_pred CCCCCC--------------------------------c-----cEEEEeecCCCHhHhhhhhcccccCCCceEEEEEee
Q psy4494 121 GIDKPN--------------------------------V-----RFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYR 163 (234)
Q Consensus 121 Gid~~~--------------------------------v-----~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~ 163 (234)
|+|++. | .+||||+.|.+...|.||+||+||.|.+|.+++|++
T Consensus 502 GtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls 581 (853)
T 2fsf_A 502 GTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLS 581 (853)
T ss_dssp CSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEE
T ss_pred CcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEec
Confidence 999997 4 599999999999999999999999999999999999
Q ss_pred cccH
Q psy4494 164 LPDV 167 (234)
Q Consensus 164 ~~d~ 167 (234)
..|.
T Consensus 582 ~eD~ 585 (853)
T 2fsf_A 582 MEDA 585 (853)
T ss_dssp TTSG
T ss_pred ccHH
Confidence 8764
No 35
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.71 E-value=3.7e-17 Score=145.49 Aligned_cols=109 Identities=19% Similarity=0.267 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHhh---cCCCcEEEEecchHHHHHHHHHHHHcCCceeeecc--------CCCchh--------------
Q psy4494 60 KDCLDELADLMSRR---FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA--------KLESNV-------------- 114 (234)
Q Consensus 60 ~~~~~~l~~~l~~~---~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~--------~~~~~~-------------- 114 (234)
..++..+.+++... ..+.++||||++++.++.+++.|...|+.+..+|| +++.++
T Consensus 342 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~ 421 (494)
T 1wp9_A 342 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN 421 (494)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS
T ss_pred ChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCce
Confidence 34666777777653 35789999999999999999999999999999999 787765
Q ss_pred ----hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHHH
Q psy4494 115 ----SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFK 169 (234)
Q Consensus 115 ----T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~ 169 (234)
|+++++|+|+|++++||+||+|+++..|+||+||+||.|+ |.++.++.+.+...
T Consensus 422 vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 422 VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDE 479 (494)
T ss_dssp EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHH
T ss_pred EEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHH
Confidence 9999999999999999999999999999999999999998 99999999887653
No 36
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.71 E-value=2.9e-17 Score=149.90 Aligned_cols=108 Identities=18% Similarity=0.243 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhh---cCCCcEEEEecchHHHHHHHHHHHHc------------CCceeeeccCCCchh----------
Q psy4494 60 KDCLDELADLMSRR---FRNQSGIIYTTSIKECEDLREELRNR------------GLRVSAYHAKLESNV---------- 114 (234)
Q Consensus 60 ~~~~~~l~~~l~~~---~~~~~~iIf~~t~~~~~~l~~~L~~~------------~~~~~~~h~~~~~~~---------- 114 (234)
..++..|.+++.+. ..+.++||||++++.++.++..|... |.....+||+|++++
T Consensus 371 ~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~ 450 (556)
T 4a2p_A 371 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 450 (556)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------------------
T ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcc
Confidence 34667777777543 35689999999999999999999875 444556677787765
Q ss_pred ---------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHHH
Q psy4494 115 ---------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFK 169 (234)
Q Consensus 115 ---------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~ 169 (234)
|+++++|+|+|+|++|||||+|+++..|+||+|| ||. ++|.++++++..+...
T Consensus 451 ~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 451 SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 512 (556)
T ss_dssp ---CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHHH
T ss_pred cCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHH
Confidence 9999999999999999999999999999999999 999 8899999998876543
No 37
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.70 E-value=1.4e-17 Score=162.59 Aligned_cols=163 Identities=19% Similarity=0.341 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCC---------------------------------------
Q psy4494 61 DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGL--------------------------------------- 101 (234)
Q Consensus 61 ~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~--------------------------------------- 101 (234)
.++..+.+.+... ...++||||+|++.|+.++..|...++
T Consensus 322 ~~~~~li~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 400 (997)
T 4a4z_A 322 KTWPEIVNYLRKR-ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLER 400 (997)
T ss_dssp THHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhc
Confidence 4566677777643 567899999999999999999977655
Q ss_pred ceeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecCC---------CHhHhhhhhcccccCC-
Q psy4494 102 RVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLSK---------SMENFYQESGRAGRDG- 153 (234)
Q Consensus 102 ~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P~---------~~~~y~qr~GR~gR~g- 153 (234)
.+.++||+|++.+ |+++++|||+|+ ..||+++.|. +..+|+||+|||||.|
T Consensus 401 gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~ 479 (997)
T 4a4z_A 401 GIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGL 479 (997)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTT
T ss_pred CeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCC
Confidence 3689999999866 999999999999 6666655555 9999999999999998
Q ss_pred -CceEEEEEee--cccHHHhhhhHHhh-------------------hhhhHhHHHHHHHh-----hcCcccHHHHHHhHc
Q psy4494 154 -QIAHCILYYR--LPDVFKLSSMVFDQ-------------------QTGLANLYNIVSYC-----LDQTRCRRAIIASYF 206 (234)
Q Consensus 154 -~~~~~i~~~~--~~d~~~~~~~~~~~-------------------~~~~~~l~~~~~~~-----~~~~~Crr~~l~~~f 206 (234)
..|.+++++. ..+...+..++... +.....++.|+.+. .+...|++...+.+|
T Consensus 480 ~~~G~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~~l 559 (997)
T 4a4z_A 480 DSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIKVL 559 (997)
T ss_dssp CSSEEEEEECCSSCCCHHHHHHHHHSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEecCCCcchHHHHHHHhcCCCcccccccccchHHHHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5688888883 33444444442211 11122345555432 235679999999999
Q ss_pred CCCCCCCccCCCCCCCCCCC
Q psy4494 207 DEAWSDTECRGMCDHCRGGR 226 (234)
Q Consensus 207 ~e~~~~~~c~~~Cd~C~~~~ 226 (234)
++......| ..||+|....
T Consensus 560 ~~~~~~~~~-~~c~~c~~~~ 578 (997)
T 4a4z_A 560 QEELQTIEY-KSCEICDNDI 578 (997)
T ss_dssp HHHHHC--------------
T ss_pred HHHHHHhhh-hccccccccH
Confidence 987655457 6799996543
No 38
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.70 E-value=3.7e-17 Score=144.79 Aligned_cols=99 Identities=18% Similarity=0.272 Sum_probs=83.8
Q ss_pred HHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCcee-eeccCCCc------------hh----hhhcccCCCCC
Q psy4494 63 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVS-AYHAKLES------------NV----SIAFGLGIDKP 125 (234)
Q Consensus 63 ~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~-~~h~~~~~------------~~----T~~~~~Gid~~ 125 (234)
...+.+++.. .+.++||||+|++.++.++..|+..|+.+. .+||.... -. |+++++|+|+|
T Consensus 241 ~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~r~~~~f~~g~~~vLvat~s~T~~~~~GiDip 318 (414)
T 3oiy_A 241 KEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKNFEDFKVGKINILIGVQAYYGKLTRGVDLP 318 (414)
T ss_dssp HHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCHHHHHHHHHTTSCSEEEEECCTTCCCCCCCCCT
T ss_pred HHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCcchHHHHHhCCCCeEEEEecCcCchhhccCccc
Confidence 3445555554 357899999999999999999999999998 99985211 01 68899999999
Q ss_pred C-ccEEEEeecC--CCHhHhhhhhcccccCC----CceEEEEEee
Q psy4494 126 N-VRFVIHHCLS--KSMENFYQESGRAGRDG----QIAHCILYYR 163 (234)
Q Consensus 126 ~-v~~Vi~~~~P--~~~~~y~qr~GR~gR~g----~~~~~i~~~~ 163 (234)
+ |++||+||+| .+..+|+||+||+||.| +.|.+++++.
T Consensus 319 ~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~ 363 (414)
T 3oiy_A 319 ERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEE 363 (414)
T ss_dssp TTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEECC
T ss_pred cccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEEc
Confidence 9 9999999999 99999999999999987 5899999994
No 39
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.70 E-value=7.9e-17 Score=152.61 Aligned_cols=110 Identities=24% Similarity=0.252 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHHhh-cCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh----------------hhhcccC
Q psy4494 59 QKDCLDELADLMSRR-FRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV----------------SIAFGLG 121 (234)
Q Consensus 59 ~~~~~~~l~~~l~~~-~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~----------------T~~~~~G 121 (234)
..+|...|.+.+... ..++++||||+|++.++.|+..|...|+++..+||.+.+.+ |+.+|||
T Consensus 442 ~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G~VtIATnmAgRG 521 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRGGVTVATNMAGRG 521 (922)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTTCEEEEETTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCCeEEEecchhhcC
Confidence 456787787777543 25678999999999999999999999999999999987655 9999999
Q ss_pred CCCCCc----------------------------------------------------cEEEEeecCCCHhHhhhhhccc
Q psy4494 122 IDKPNV----------------------------------------------------RFVIHHCLSKSMENFYQESGRA 149 (234)
Q Consensus 122 id~~~v----------------------------------------------------~~Vi~~~~P~~~~~y~qr~GR~ 149 (234)
+||+.+ .+||||+.|.+...|.||+||+
T Consensus 522 tDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRT 601 (922)
T 1nkt_A 522 TDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRS 601 (922)
T ss_dssp CCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTS
T ss_pred ccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhccc
Confidence 999975 4999999999999999999999
Q ss_pred ccCCCceEEEEEeecccHH
Q psy4494 150 GRDGQIAHCILYYRLPDVF 168 (234)
Q Consensus 150 gR~g~~~~~i~~~~~~d~~ 168 (234)
||.|.+|.+++|++..|..
T Consensus 602 GRqGdpG~s~fflSleD~l 620 (922)
T 1nkt_A 602 GRQGDPGESRFYLSLGDEL 620 (922)
T ss_dssp SGGGCCEEEEEEEETTSHH
T ss_pred ccCCCCeeEEEEechhHHH
Confidence 9999999999999987753
No 40
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.69 E-value=2.8e-17 Score=153.28 Aligned_cols=92 Identities=24% Similarity=0.343 Sum_probs=85.2
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh-----------hhhcccCCCCCCccEEE----------Ee
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-----------SIAFGLGIDKPNVRFVI----------HH 133 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~-----------T~~~~~Gid~~~v~~Vi----------~~ 133 (234)
.++++||||+|++.++.+++.|++.++.+..+||++++++ |++++||||++ |++|| ||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~er~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNy 473 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDF 473 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGGSCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEEC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccc
Confidence 5788999999999999999999999999999999999876 99999999997 99988 67
Q ss_pred e-----------cCCCHhHhhhhhcccccCCCceEEEEEeecccHHH
Q psy4494 134 C-----------LSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFK 169 (234)
Q Consensus 134 ~-----------~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~ 169 (234)
| .|.+.++|+||+||+|| |++|. +.|+++.|...
T Consensus 474 DydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 474 SLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp CCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred ccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 7 99999999999999999 99999 99998876543
No 41
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.69 E-value=4.8e-17 Score=148.14 Aligned_cols=108 Identities=18% Similarity=0.238 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhh---cCCCcEEEEecchHHHHHHHHHHHHcC----Ccee--------eeccCCCchh-----------
Q psy4494 61 DCLDELADLMSRR---FRNQSGIIYTTSIKECEDLREELRNRG----LRVS--------AYHAKLESNV----------- 114 (234)
Q Consensus 61 ~~~~~l~~~l~~~---~~~~~~iIf~~t~~~~~~l~~~L~~~~----~~~~--------~~h~~~~~~~----------- 114 (234)
.++..|.+++... ..+.++||||++++.++.++..|...+ +.+. .+||+|++++
T Consensus 371 ~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 450 (555)
T 3tbk_A 371 PKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRAS 450 (555)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-------------------------
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcC
Confidence 4666666666542 246899999999999999999999864 3444 4455777765
Q ss_pred --------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHHHh
Q psy4494 115 --------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKL 170 (234)
Q Consensus 115 --------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~ 170 (234)
|+++++|+|+|++++|||||+|+++.+|+||+|| ||. ++|.+++++++.+....
T Consensus 451 g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 451 GDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEK 512 (555)
T ss_dssp -CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHH
T ss_pred CCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHH
Confidence 9999999999999999999999999999999999 999 89999999998766443
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.66 E-value=1.5e-16 Score=143.19 Aligned_cols=88 Identities=20% Similarity=0.194 Sum_probs=81.3
Q ss_pred CCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh--------------hhhcccCCCCCCccEEEEee-------
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------SIAFGLGIDKPNVRFVIHHC------- 134 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~--------------T~~~~~Gid~~~v~~Vi~~~------- 134 (234)
.+++||||+|++.++.+++.|+..|+.+..+||++..+. |+++++|+|+|+ ++|||||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~ 266 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVI 266 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHHHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccc
Confidence 568999999999999999999999999999999887543 999999999999 9999999
Q ss_pred -------------cCCCHhHhhhhhcccccCCC-ceEEEEEeec
Q psy4494 135 -------------LSKSMENFYQESGRAGRDGQ-IAHCILYYRL 164 (234)
Q Consensus 135 -------------~P~~~~~y~qr~GR~gR~g~-~~~~i~~~~~ 164 (234)
.|.+..+|+||+||+||.|. +|.+++|+..
T Consensus 267 d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 267 LTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp ECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8888888743
No 43
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.66 E-value=2.1e-16 Score=141.84 Aligned_cols=94 Identities=19% Similarity=0.205 Sum_probs=81.7
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh--------------hhhcccCCCCCCccEEEE--------
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------SIAFGLGIDKPNVRFVIH-------- 132 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~--------------T~~~~~Gid~~~v~~Vi~-------- 132 (234)
.++++||||+|++.++.+++.|+..++++..+||+.-.+. |+++++|+|+| +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv 254 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPV 254 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecchhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceee
Confidence 3678999999999999999999999999999999533222 99999999999 999996
Q ss_pred -----------eecCCCHhHhhhhhcccccC-CCceEEEEEe---ecccHHH
Q psy4494 133 -----------HCLSKSMENFYQESGRAGRD-GQIAHCILYY---RLPDVFK 169 (234)
Q Consensus 133 -----------~~~P~~~~~y~qr~GR~gR~-g~~~~~i~~~---~~~d~~~ 169 (234)
|+.|.+..+|+||+||+||. |++|.+++|+ ++.|...
T Consensus 255 ~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~ 306 (440)
T 1yks_A 255 LVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHH 306 (440)
T ss_dssp EETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTB
T ss_pred ecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhh
Confidence 99999999999999999997 7899999997 4555433
No 44
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.66 E-value=1.4e-16 Score=151.84 Aligned_cols=104 Identities=16% Similarity=0.219 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHH-----------cCCceeeeccCCCchh----------------
Q psy4494 62 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRN-----------RGLRVSAYHAKLESNV---------------- 114 (234)
Q Consensus 62 ~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~-----------~~~~~~~~h~~~~~~~---------------- 114 (234)
.+..+.++... ..++++||||++++.++.++..|.. .++.+.++||++++++
T Consensus 290 ~l~~l~~~~~~-~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g 368 (773)
T 2xau_A 290 AIRTVLQIHAT-EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRP 368 (773)
T ss_dssp HHHHHHHHHHH-SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSC
T ss_pred HHHHHHHHHHh-cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCC
Confidence 34444444432 2577899999999999999999985 5788999999997532
Q ss_pred -------hhhcccCCCCCCccEEEEeec------------------CCCHhHhhhhhcccccCCCceEEEEEeecccH
Q psy4494 115 -------SIAFGLGIDKPNVRFVIHHCL------------------SKSMENFYQESGRAGRDGQIAHCILYYRLPDV 167 (234)
Q Consensus 115 -------T~~~~~Gid~~~v~~Vi~~~~------------------P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~ 167 (234)
|+++++|||+|+|++||++|+ |.+..+|+||+|||||. .+|.|+.++++.++
T Consensus 369 ~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 369 GRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp CEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred ceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 899999999999999999888 88999999999999999 89999999998776
No 45
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.65 E-value=5.5e-16 Score=148.39 Aligned_cols=108 Identities=18% Similarity=0.243 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhh---cCCCcEEEEecchHHHHHHHHHHHHc------------CCceeeeccCCCchh----------
Q psy4494 60 KDCLDELADLMSRR---FRNQSGIIYTTSIKECEDLREELRNR------------GLRVSAYHAKLESNV---------- 114 (234)
Q Consensus 60 ~~~~~~l~~~l~~~---~~~~~~iIf~~t~~~~~~l~~~L~~~------------~~~~~~~h~~~~~~~---------- 114 (234)
..++..|.+++.+. ..+.++||||++++.++.++..|+.. |.....+||+|++++
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~ 691 (797)
T 4a2q_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (797)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC--------------------------
T ss_pred ChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhc
Confidence 34666677776542 35689999999999999999999874 455666788888765
Q ss_pred ---------hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccHHH
Q psy4494 115 ---------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFK 169 (234)
Q Consensus 115 ---------T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~ 169 (234)
|+++++|||+|+|++|||||+|+++..|+||+|| ||. ++|.++++++..+...
T Consensus 692 ~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 692 SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (797)
T ss_dssp --CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHHH
T ss_pred cCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHH
Confidence 9999999999999999999999999999999999 999 8899999998876543
No 46
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.64 E-value=4.1e-16 Score=145.30 Aligned_cols=94 Identities=19% Similarity=0.164 Sum_probs=82.1
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh--------------hhhcccCCCCCCccEE----------
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------SIAFGLGIDKPNVRFV---------- 130 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~--------------T~~~~~Gid~~~v~~V---------- 130 (234)
..+++||||+|++.++.+++.|+..++++..+||+...+. |+++++|+|+| |++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~ 432 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPV 432 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTTHHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChHHHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecce
Confidence 3678999999999999999999999999999999633222 99999999997 9988
Q ss_pred ----------EEeecCCCHhHhhhhhcccccCCC-ceEEEEEee---cccHHH
Q psy4494 131 ----------IHHCLSKSMENFYQESGRAGRDGQ-IAHCILYYR---LPDVFK 169 (234)
Q Consensus 131 ----------i~~~~P~~~~~y~qr~GR~gR~g~-~~~~i~~~~---~~d~~~ 169 (234)
|||+.|.+..+|+||+||+||.|. +|.+++|++ +.|...
T Consensus 433 ~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~ 485 (618)
T 2whx_A 433 ILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDH 485 (618)
T ss_dssp EECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTC
T ss_pred ecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHH
Confidence 888889999999999999999964 899999997 555443
No 47
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.64 E-value=3.5e-16 Score=141.07 Aligned_cols=89 Identities=17% Similarity=0.163 Sum_probs=78.3
Q ss_pred CCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh--------------hhhcccCCCCCCccEEEE---------
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------SIAFGLGIDKPNVRFVIH--------- 132 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~--------------T~~~~~Gid~~~v~~Vi~--------- 132 (234)
.+++||||+|++.++.+++.|+..++.+..+||..-.+. |+++++|+|+|+ ++||+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~ 268 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTI 268 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTTCCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHHHHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccccccc
Confidence 678999999999999999999999999999999633221 999999999999 99999
Q ss_pred -----------eecCCCHhHhhhhhcccccCCC-ceEEEEEeecc
Q psy4494 133 -----------HCLSKSMENFYQESGRAGRDGQ-IAHCILYYRLP 165 (234)
Q Consensus 133 -----------~~~P~~~~~y~qr~GR~gR~g~-~~~~i~~~~~~ 165 (234)
|+.|.+..+|+||+||+||.|. +|.+++|+.+.
T Consensus 269 ~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 269 LEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7799999999999999999997 89999999875
No 48
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.62 E-value=7.6e-16 Score=129.82 Aligned_cols=107 Identities=16% Similarity=0.107 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhhc-CCCcEEEEecchHHHHHHHHHHHHc-CCceeeeccCCCchh--------------------hhh
Q psy4494 60 KDCLDELADLMSRRF-RNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESNV--------------------SIA 117 (234)
Q Consensus 60 ~~~~~~l~~~l~~~~-~~~~~iIf~~t~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~--------------------T~~ 117 (234)
..|+..|.+++.+.. .+.++||||+++..++.+...|... |+.+..+||++++++ |++
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~ 174 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 174 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhh
Confidence 456777777665421 5679999999999999999999885 999999999998755 889
Q ss_pred cccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEE--EEEeeccc
Q psy4494 118 FGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHC--ILYYRLPD 166 (234)
Q Consensus 118 ~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~--i~~~~~~d 166 (234)
.|+|+|++.+++||+||+|+++..|.|++||++|.|+.+.+ +.++....
T Consensus 175 ~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 175 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred hcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 99999999999999999999999999999999999987544 44555543
No 49
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.1e-15 Score=150.39 Aligned_cols=103 Identities=20% Similarity=0.380 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCc---------------------------------------
Q psy4494 62 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLR--------------------------------------- 102 (234)
Q Consensus 62 ~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~--------------------------------------- 102 (234)
.+..+...+... ...++||||+|++.|+.++..|...++.
T Consensus 428 ~l~~li~~l~~~-~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 506 (1108)
T 3l9o_A 428 DIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRG 506 (1108)
T ss_dssp HHHHHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHT
T ss_pred HHHHHHHHHHhc-CCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcC
Confidence 344455554432 4678999999999999999998653332
Q ss_pred eeeeccCCCchh------------------hhhcccCCCCCCccEEEEeecC--------CCHhHhhhhhcccccCC--C
Q psy4494 103 VSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHCLS--------KSMENFYQESGRAGRDG--Q 154 (234)
Q Consensus 103 ~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~~P--------~~~~~y~qr~GR~gR~g--~ 154 (234)
+..+||+|++.+ |+++++|||+|++++||+++.| .+..+|+||+|||||.| .
T Consensus 507 V~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~ 586 (1108)
T 3l9o_A 507 IGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDD 586 (1108)
T ss_dssp EEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCS
T ss_pred eeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCC
Confidence 688999999876 9999999999999999977664 36678999999999999 6
Q ss_pred ceEEEEEeecc
Q psy4494 155 IAHCILYYRLP 165 (234)
Q Consensus 155 ~~~~i~~~~~~ 165 (234)
.|.+++++++.
T Consensus 587 ~G~~ill~~~~ 597 (1108)
T 3l9o_A 587 RGIVIMMIDEK 597 (1108)
T ss_dssp SEEEEEEECCC
T ss_pred ceEEEEEecCC
Confidence 89999999875
No 50
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.60 E-value=1.7e-15 Score=142.35 Aligned_cols=92 Identities=21% Similarity=0.201 Sum_probs=80.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh--------------hhhcccCCCCCCccEEEE--------
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------SIAFGLGIDKPNVRFVIH-------- 132 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~--------------T~~~~~Gid~~~v~~Vi~-------- 132 (234)
.++++||||+|++.++.+++.|+..++.+..+||+.-.+. |+++++|+|+| +++|||
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~ 487 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRKSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPT 487 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSSSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChHHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccce
Confidence 4678999999999999999999999999999999522111 99999999999 999998
Q ss_pred ------------eecCCCHhHhhhhhcccccC-CCceEEEEEe---ecccH
Q psy4494 133 ------------HCLSKSMENFYQESGRAGRD-GQIAHCILYY---RLPDV 167 (234)
Q Consensus 133 ------------~~~P~~~~~y~qr~GR~gR~-g~~~~~i~~~---~~~d~ 167 (234)
|+.|.+..+|+||+||+||. |++|.+++|+ ++.|.
T Consensus 488 vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~ 538 (673)
T 2wv9_A 488 ILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDT 538 (673)
T ss_dssp EECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCT
T ss_pred eeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHH
Confidence 67899999999999999998 7899999996 45553
No 51
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.60 E-value=3.1e-16 Score=154.36 Aligned_cols=72 Identities=18% Similarity=0.302 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCcee-eeccCCCchh-----------------hhhcccCCCC
Q psy4494 63 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVS-AYHAKLESNV-----------------SIAFGLGIDK 124 (234)
Q Consensus 63 ~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~-~~h~~~~~~~-----------------T~~~~~Gid~ 124 (234)
...|.+++.. .++++||||+|++.++.++..|+..|+.+. .+||.-.. . |++++||+|+
T Consensus 298 ~~~L~~ll~~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~rr~-l~~F~~G~~~VLVatas~TdvlarGIDi 374 (1104)
T 4ddu_A 298 KEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKN-FEDFKVGKINILIGVQAYYGKLTRGVDL 374 (1104)
T ss_dssp HHHHHHHHHH--HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSHHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCC
T ss_pred HHHHHHHHHh--cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCcHHH-HHHHHCCCCCEEEEecCCCCeeEecCcC
Confidence 3444555554 347899999999999999999999999998 99994221 1 6899999999
Q ss_pred CC-ccEEEEeecCC
Q psy4494 125 PN-VRFVIHHCLSK 137 (234)
Q Consensus 125 ~~-v~~Vi~~~~P~ 137 (234)
|+ |++|||||+|.
T Consensus 375 p~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 375 PERIKYVIFWGTPS 388 (1104)
T ss_dssp TTTCCEEEEESCCE
T ss_pred CCCCCEEEEECCCC
Confidence 99 99999999998
No 52
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.57 E-value=8.4e-15 Score=138.50 Aligned_cols=103 Identities=25% Similarity=0.314 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcC------------------------------------Ccee
Q psy4494 61 DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRG------------------------------------LRVS 104 (234)
Q Consensus 61 ~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~------------------------------------~~~~ 104 (234)
.+...+.+.+. .++++||||+|++.++.++..|.+.. ..+.
T Consensus 240 ~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~ 316 (715)
T 2va8_A 240 AIIAYTLDSLS---KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVA 316 (715)
T ss_dssp HHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEE
Confidence 34555555553 56889999999999999999998642 2388
Q ss_pred eeccCCCchh------------------hhhcccCCCCCCccEEEE----ee-------cCCCHhHhhhhhcccccCC--
Q psy4494 105 AYHAKLESNV------------------SIAFGLGIDKPNVRFVIH----HC-------LSKSMENFYQESGRAGRDG-- 153 (234)
Q Consensus 105 ~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~----~~-------~P~~~~~y~qr~GR~gR~g-- 153 (234)
++||++++++ |+++++|+|+|++++||+ || .|.+..+|+||+|||||.|
T Consensus 317 ~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~ 396 (715)
T 2va8_A 317 YHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFD 396 (715)
T ss_dssp EECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTC
T ss_pred EECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCC
Confidence 9999999876 999999999999999999 99 8999999999999999988
Q ss_pred CceEEEEEeeccc
Q psy4494 154 QIAHCILYYRLPD 166 (234)
Q Consensus 154 ~~~~~i~~~~~~d 166 (234)
.+|.++++++..+
T Consensus 397 ~~G~~~~l~~~~~ 409 (715)
T 2va8_A 397 QIGESIVVVRDKE 409 (715)
T ss_dssp SCEEEEEECSCGG
T ss_pred CCceEEEEeCCch
Confidence 5799999998766
No 53
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.57 E-value=7e-15 Score=143.63 Aligned_cols=109 Identities=19% Similarity=0.320 Sum_probs=89.4
Q ss_pred HHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCc---------------------------------------e
Q psy4494 63 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLR---------------------------------------V 103 (234)
Q Consensus 63 ~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~---------------------------------------~ 103 (234)
+..+.+.+... ...++||||+|++.|+.++..|...++. +
T Consensus 331 l~~l~~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI 409 (1010)
T 2xgj_A 331 IYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGI 409 (1010)
T ss_dssp HHHHHHHHHHH-TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTE
T ss_pred HHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCe
Confidence 34455555432 4568999999999999999999765442 6
Q ss_pred eeeccCCCchh------------------hhhcccCCCCCCccEEEE----eec----CCCHhHhhhhhcccccCCC--c
Q psy4494 104 SAYHAKLESNV------------------SIAFGLGIDKPNVRFVIH----HCL----SKSMENFYQESGRAGRDGQ--I 155 (234)
Q Consensus 104 ~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~----~~~----P~~~~~y~qr~GR~gR~g~--~ 155 (234)
..+||+|++.+ |+++++|+|+|++++||+ ||. |.++.+|+||+|||||.|. .
T Consensus 410 ~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~ 489 (1010)
T 2xgj_A 410 GIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDR 489 (1010)
T ss_dssp EEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSS
T ss_pred eEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCc
Confidence 78999999876 999999999999999999 999 8999999999999999996 5
Q ss_pred eEEEEEeecc-cHHHhhh
Q psy4494 156 AHCILYYRLP-DVFKLSS 172 (234)
Q Consensus 156 ~~~i~~~~~~-d~~~~~~ 172 (234)
|.+++++++. +...+..
T Consensus 490 G~vi~l~~~~~e~~~~~~ 507 (1010)
T 2xgj_A 490 GIVIMMIDEKMEPQVAKG 507 (1010)
T ss_dssp EEEEEEECSCCCHHHHHH
T ss_pred eEEEEEECCCCCHHHHHH
Confidence 9999999865 4333333
No 54
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.57 E-value=6.6e-15 Score=143.50 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHH-cCCceeeeccCCCchh--------------------hhh
Q psy4494 59 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRN-RGLRVSAYHAKLESNV--------------------SIA 117 (234)
Q Consensus 59 ~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~-~~~~~~~~h~~~~~~~--------------------T~~ 117 (234)
...+...|.+++.. ..+.++||||++++.++.++..|.. .|+++..+||+|++.+ |++
T Consensus 487 ~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v 565 (968)
T 3dmq_A 487 FDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEI 565 (968)
T ss_dssp TSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCC
T ss_pred ccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecch
Confidence 34578888888875 4678999999999999999999995 5999999999999865 899
Q ss_pred cccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEEEEEe
Q psy4494 118 FGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYY 162 (234)
Q Consensus 118 ~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~ 162 (234)
+++|+|+|++++||+||+|+++..|.|++||+||.|+.+.+++++
T Consensus 566 ~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 566 GSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp TTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred hhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEE
Confidence 999999999999999999999999999999999999988655554
No 55
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.56 E-value=4.6e-15 Score=145.65 Aligned_cols=105 Identities=23% Similarity=0.336 Sum_probs=80.8
Q ss_pred HHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh-----------------hhhcccCCCCC
Q psy4494 63 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-----------------SIAFGLGIDKP 125 (234)
Q Consensus 63 ~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~-----------------T~~~~~Gid~~ 125 (234)
...|.+++.. .+.++||||+|++.++.++..|+.. +.+..+||++.... |+++++|+|+|
T Consensus 264 ~~~L~~ll~~--~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip 340 (1054)
T 1gku_B 264 ISTLSSILEK--LGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLP 340 (1054)
T ss_dssp TTTTHHHHTT--SCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSSHHHHHHHHTSCSEEEEECC------CCSCCT
T ss_pred HHHHHHHHhh--cCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHHHHHHHHHcCCCcEEEEecCCCCeeEeccccC
Confidence 3345555553 2578999999999999999999988 99999999996432 38899999999
Q ss_pred Cc-cEEEEeecC--------------------------------------------------------------------
Q psy4494 126 NV-RFVIHHCLS-------------------------------------------------------------------- 136 (234)
Q Consensus 126 ~v-~~Vi~~~~P-------------------------------------------------------------------- 136 (234)
+| ++|||||+|
T Consensus 341 ~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 420 (1054)
T 1gku_B 341 ERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGE 420 (1054)
T ss_dssp TTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTE
T ss_pred CcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecc
Confidence 95 999999999
Q ss_pred ---CCHhHhhhhhcccccCCCceE--EEEEeecccHHHh
Q psy4494 137 ---KSMENFYQESGRAGRDGQIAH--CILYYRLPDVFKL 170 (234)
Q Consensus 137 ---~~~~~y~qr~GR~gR~g~~~~--~i~~~~~~d~~~~ 170 (234)
.+..+|+||+||+||.|..|. ++.++...|...+
T Consensus 421 ~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~ 459 (1054)
T 1gku_B 421 VIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELL 459 (1054)
T ss_dssp EEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHH
T ss_pred eecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHH
Confidence 789999999999999776653 5666655554443
No 56
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.55 E-value=1.4e-14 Score=143.18 Aligned_cols=91 Identities=20% Similarity=0.252 Sum_probs=84.5
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc--CCceeeeccCCCchh------------------hhhcccCCCCCCccEEEEee
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR--GLRVSAYHAKLESNV------------------SIAFGLGIDKPNVRFVIHHC 134 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~------------------T~~~~~Gid~~~v~~Vi~~~ 134 (234)
.+++++|||++++.++.+++.|++. +..+..+||+|++++ |+++++|+|+|++++||+++
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~ 890 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 890 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeC
Confidence 5788999999999999999999987 889999999999866 99999999999999999998
Q ss_pred c-CCCHhHhhhhhcccccCCCceEEEEEeecc
Q psy4494 135 L-SKSMENFYQESGRAGRDGQIAHCILYYRLP 165 (234)
Q Consensus 135 ~-P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~ 165 (234)
. +.++.+|+||+||+||.|+.|.+++++++.
T Consensus 891 ~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 891 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 8 468999999999999999999999999764
No 57
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.55 E-value=1.3e-14 Score=136.94 Aligned_cols=104 Identities=17% Similarity=0.253 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHc------------------------------CCceeeeccCCC
Q psy4494 62 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR------------------------------GLRVSAYHAKLE 111 (234)
Q Consensus 62 ~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~------------------------------~~~~~~~h~~~~ 111 (234)
+...+.+.+. .++++||||+|++.++.++..|.+. +..+..+||+++
T Consensus 231 ~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~ 307 (702)
T 2p6r_A 231 FEELVEECVA---ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLL 307 (702)
T ss_dssp HHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSC
T ss_pred HHHHHHHHHh---cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCC
Confidence 4445555554 5688999999999999999999753 134788999999
Q ss_pred chh------------------hhhcccCCCCCCccEEEE----ee---cCCCHhHhhhhhcccccCC--CceEEEEEeec
Q psy4494 112 SNV------------------SIAFGLGIDKPNVRFVIH----HC---LSKSMENFYQESGRAGRDG--QIAHCILYYRL 164 (234)
Q Consensus 112 ~~~------------------T~~~~~Gid~~~v~~Vi~----~~---~P~~~~~y~qr~GR~gR~g--~~~~~i~~~~~ 164 (234)
+++ |+++++|+|+|++++||+ || .|.+..+|+||+|||||.| .+|.++++++.
T Consensus 308 ~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 387 (702)
T 2p6r_A 308 NGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGK 387 (702)
T ss_dssp HHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCG
T ss_pred HHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecC
Confidence 876 999999999999999999 66 7899999999999999988 58999999998
Q ss_pred ccHH
Q psy4494 165 PDVF 168 (234)
Q Consensus 165 ~d~~ 168 (234)
.+..
T Consensus 388 ~~~~ 391 (702)
T 2p6r_A 388 RDRE 391 (702)
T ss_dssp GGHH
T ss_pred ccHH
Confidence 8754
No 58
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.54 E-value=1.9e-14 Score=135.10 Aligned_cols=96 Identities=21% Similarity=0.276 Sum_probs=81.8
Q ss_pred CcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh--------------------hhhcccCCCCCCccEEEEeec-
Q psy4494 77 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------------SIAFGLGIDKPNVRFVIHHCL- 135 (234)
Q Consensus 77 ~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~--------------------T~~~~~Gid~~~v~~Vi~~~~- 135 (234)
...||||+|++.++.++..|...++.+..+||+|++++ |+++++|+|+ +|++||++|+
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcc
Confidence 44699999999999999999999999999999999873 9999999999 8999999999
Q ss_pred -------------CCCHhHhhhhhcccccCCCc---eEEEEEeecccHHHhhhhH
Q psy4494 136 -------------SKSMENFYQESGRAGRDGQI---AHCILYYRLPDVFKLSSMV 174 (234)
Q Consensus 136 -------------P~~~~~y~qr~GR~gR~g~~---~~~i~~~~~~d~~~~~~~~ 174 (234)
|.+..+|+||+|||||.|.. |.+++++ +.+...+..+.
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~-~~d~~~~~~~~ 453 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMN-HEDLSLLKEIL 453 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESS-TTHHHHHHHHH
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEe-cchHHHHHHHH
Confidence 77999999999999999864 7666654 44444444443
No 59
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.54 E-value=1.4e-14 Score=129.66 Aligned_cols=86 Identities=16% Similarity=0.204 Sum_probs=74.5
Q ss_pred CCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh--------------hhhcccCCCCCCccE------------
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--------------SIAFGLGIDKPNVRF------------ 129 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~--------------T~~~~~Gid~~~v~~------------ 129 (234)
.+++||||+|++.++.+++.|+..++++..+||++..+. |+++++|+|+| +..
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~ 249 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPIL 249 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTTHHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCccHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCcccccee
Confidence 568999999999999999999999999999999854322 99999999999 655
Q ss_pred -----EEEeecCCCHhHhhhhhcccccCCC-ceEEEEEe
Q psy4494 130 -----VIHHCLSKSMENFYQESGRAGRDGQ-IAHCILYY 162 (234)
Q Consensus 130 -----Vi~~~~P~~~~~y~qr~GR~gR~g~-~~~~i~~~ 162 (234)
||+++.|.+..+|+||+||+||.|. .+.++++.
T Consensus 250 d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 250 LDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp ETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred cccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 6889999999999999999999985 45555554
No 60
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.53 E-value=1.4e-14 Score=137.08 Aligned_cols=104 Identities=21% Similarity=0.290 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHc------------------C---------------Cceeeecc
Q psy4494 62 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR------------------G---------------LRVSAYHA 108 (234)
Q Consensus 62 ~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~------------------~---------------~~~~~~h~ 108 (234)
+...+.+.+. .++++||||+|++.++.++..|.+. + ..+.++||
T Consensus 226 ~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~ 302 (720)
T 2zj8_A 226 WEELVYDAIR---KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHA 302 (720)
T ss_dssp TTHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECT
T ss_pred HHHHHHHHHh---CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecC
Confidence 3444555554 4688999999999999999999753 1 13889999
Q ss_pred CCCchh------------------hhhcccCCCCCCccEEEE----ee----cCCCHhHhhhhhcccccCC--CceEEEE
Q psy4494 109 KLESNV------------------SIAFGLGIDKPNVRFVIH----HC----LSKSMENFYQESGRAGRDG--QIAHCIL 160 (234)
Q Consensus 109 ~~~~~~------------------T~~~~~Gid~~~v~~Vi~----~~----~P~~~~~y~qr~GR~gR~g--~~~~~i~ 160 (234)
++++++ |+++++|+|+|++++||+ || .|.+..+|+||+|||||.| ..|.+++
T Consensus 303 ~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~ 382 (720)
T 2zj8_A 303 GLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGII 382 (720)
T ss_dssp TSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEE
Confidence 999877 999999999999999999 77 6899999999999999988 5899999
Q ss_pred EeecccHH
Q psy4494 161 YYRLPDVF 168 (234)
Q Consensus 161 ~~~~~d~~ 168 (234)
+++..+..
T Consensus 383 l~~~~~~~ 390 (720)
T 2zj8_A 383 VSTSDDPR 390 (720)
T ss_dssp ECSSSCHH
T ss_pred EecCccHH
Confidence 99987743
No 61
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.50 E-value=2.1e-14 Score=136.74 Aligned_cols=90 Identities=24% Similarity=0.392 Sum_probs=78.3
Q ss_pred CCCcEEEEecch--------HHHHHHHHHHHH---cCCceeeeccCCCchh------------------hhhcccCCCCC
Q psy4494 75 RNQSGIIYTTSI--------KECEDLREELRN---RGLRVSAYHAKLESNV------------------SIAFGLGIDKP 125 (234)
Q Consensus 75 ~~~~~iIf~~t~--------~~~~~l~~~L~~---~~~~~~~~h~~~~~~~------------------T~~~~~Gid~~ 125 (234)
.+.+++|||++. +.++.+++.|.+ .++.+..+||+|++++ |+++++|+|+|
T Consensus 577 ~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP 656 (780)
T 1gm5_A 577 RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVP 656 (780)
T ss_dssp TSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCT
T ss_pred cCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCC
Confidence 467899999965 457888999987 4788999999998866 99999999999
Q ss_pred CccEEEEeecCC-CHhHhhhhhcccccCCCceEEEEEeec
Q psy4494 126 NVRFVIHHCLSK-SMENFYQESGRAGRDGQIAHCILYYRL 164 (234)
Q Consensus 126 ~v~~Vi~~~~P~-~~~~y~qr~GR~gR~g~~~~~i~~~~~ 164 (234)
++++||+++.|. +...|.||+||+||.|++|.|++++++
T Consensus 657 ~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 657 RANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp TCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred CCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 999999999996 688899999999999999999999984
No 62
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.49 E-value=3.5e-14 Score=127.75 Aligned_cols=99 Identities=19% Similarity=0.199 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------hhhcccCC
Q psy4494 61 DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------SIAFGLGI 122 (234)
Q Consensus 61 ~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T~~~~~Gi 122 (234)
.++..+.+++.. ..+.++||||++++.++.+++.|. +..+||+++.++ |+++++|+
T Consensus 335 ~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gl 408 (472)
T 2fwr_A 335 NKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGI 408 (472)
T ss_dssp HHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSS
T ss_pred HHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCc
Confidence 456677777765 467899999999999999999984 678999998765 99999999
Q ss_pred CCCCccEEEEeecCCCHhHhhhhhcccccCCCc---eEEEEEeecc
Q psy4494 123 DKPNVRFVIHHCLSKSMENFYQESGRAGRDGQI---AHCILYYRLP 165 (234)
Q Consensus 123 d~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~---~~~i~~~~~~ 165 (234)
|+|++++||+++.|+++..|+||+||+||.|+. ...+.+++..
T Consensus 409 dlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 409 DVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp CSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred ccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 999999999999999999999999999998844 4444455544
No 63
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.47 E-value=3.7e-13 Score=137.17 Aligned_cols=162 Identities=14% Similarity=0.094 Sum_probs=111.7
Q ss_pred HhhhccCchh-HHHHhhCCCCCcEEEEEeeccCCCcceEEEEEEcCCChHHHH----HHHHHHHHhhcCCCcEEEEecch
Q psy4494 12 NLWRTSFYQV-SIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCL----DELADLMSRRFRNQSGIIYTTSI 86 (234)
Q Consensus 12 ~l~~at~p~~-~i~~~~~~~~~~i~~~~~~~~~~~~~~~y~v~~~~~~~~~~~----~~l~~~l~~~~~~~~~iIf~~t~ 86 (234)
-.+|||.++. .++.-++.++..+.......-|-.++.+....... .....+ ..+...+......+++||||+|+
T Consensus 1087 I~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR 1165 (1724)
T 4f92_B 1087 VALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNIS-HTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSR 1165 (1724)
T ss_dssp EEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCC-SHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSH
T ss_pred EEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCC-CchhhhhhhcchHHHHHHHhcCCCCeeeeCCCH
Confidence 3478898886 55556777666554332222222333333322221 222222 22334444444678999999999
Q ss_pred HHHHHHHHHHHHc----------------------------------CCceeeeccCCCchh------------------
Q psy4494 87 KECEDLREELRNR----------------------------------GLRVSAYHAKLESNV------------------ 114 (234)
Q Consensus 87 ~~~~~l~~~L~~~----------------------------------~~~~~~~h~~~~~~~------------------ 114 (234)
+.|+.++..|... ..-+.++||+|++++
T Consensus 1166 ~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLva 1245 (1724)
T 4f92_B 1166 KQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVA 1245 (1724)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEE
T ss_pred HHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEE
Confidence 9999998877421 112788999999977
Q ss_pred hhhcccCCCCCCccEEEE----------eecCCCHhHhhhhhcccccCCC--ceEEEEEeecccHHHhhhhH
Q psy4494 115 SIAFGLGIDKPNVRFVIH----------HCLSKSMENFYQESGRAGRDGQ--IAHCILYYRLPDVFKLSSMV 174 (234)
Q Consensus 115 T~~~~~Gid~~~v~~Vi~----------~~~P~~~~~y~qr~GR~gR~g~--~~~~i~~~~~~d~~~~~~~~ 174 (234)
|+.+++|+|+|.+.+||. ...|.++.+|+||+|||||.|. .|.++++..+.+...+..++
T Consensus 1246 T~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll 1317 (1724)
T 4f92_B 1246 SRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFL 1317 (1724)
T ss_dssp EGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHT
T ss_pred ChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHh
Confidence 999999999999999883 3346789999999999999986 79999999988777666554
No 64
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.46 E-value=6.7e-14 Score=127.07 Aligned_cols=88 Identities=17% Similarity=0.180 Sum_probs=77.8
Q ss_pred CCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh------------------h-hhcccCCCCCCccEEEEeecC
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV------------------S-IAFGLGIDKPNVRFVIHHCLS 136 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~------------------T-~~~~~Gid~~~v~~Vi~~~~P 136 (234)
..+.|||++ .+.++.+++.|.+.+.++..+||++++++ | +++++|+|+|++++||+++.|
T Consensus 348 ~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~ 426 (510)
T 2oca_A 348 ENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGV 426 (510)
T ss_dssp CEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCC
T ss_pred CCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCC
Confidence 445666666 88899999999998889999999999765 8 999999999999999999999
Q ss_pred CCHhHhhhhhcccccCCCceEEEEEeec
Q psy4494 137 KSMENFYQESGRAGRDGQIAHCILYYRL 164 (234)
Q Consensus 137 ~~~~~y~qr~GR~gR~g~~~~~i~~~~~ 164 (234)
.+...|+|++||+||.|..+..+++++.
T Consensus 427 ~s~~~~~Q~~GR~gR~g~~~~~v~i~~~ 454 (510)
T 2oca_A 427 KSKIIVLQTIGRVLRKHGSKTIATVWDL 454 (510)
T ss_dssp CSCCHHHHHHHHHHTTTCCCCCCEEEEE
T ss_pred CCHHHHHHHHhcccccCCCCceEEEEEe
Confidence 9999999999999999988766666663
No 65
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.46 E-value=1.5e-13 Score=127.17 Aligned_cols=90 Identities=24% Similarity=0.347 Sum_probs=74.7
Q ss_pred HHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCc--------eeeeccCCCc-hh-------------------hh
Q psy4494 65 ELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLR--------VSAYHAKLES-NV-------------------SI 116 (234)
Q Consensus 65 ~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~--------~~~~h~~~~~-~~-------------------T~ 116 (234)
.+.+.+....+..++||||++++.++.++..|...+.. +..+||++++ .+ |+
T Consensus 428 ~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~ 507 (590)
T 3h1t_A 428 HLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ 507 (590)
T ss_dssp HHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS
T ss_pred HHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC
Confidence 34444444334578999999999999999999876433 6788999875 11 67
Q ss_pred hcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCC
Q psy4494 117 AFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQ 154 (234)
Q Consensus 117 ~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~ 154 (234)
++++|+|+|++++||++++|.+...|+||+||+||.+.
T Consensus 508 ~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 508 LLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred hhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 99999999999999999999999999999999999764
No 66
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.44 E-value=3e-13 Score=122.47 Aligned_cols=106 Identities=16% Similarity=0.107 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhhc-CCCcEEEEecchHHHHHHHHHHHHc-CCceeeeccCCCchh--------------------hhhc
Q psy4494 61 DCLDELADLMSRRF-RNQSGIIYTTSIKECEDLREELRNR-GLRVSAYHAKLESNV--------------------SIAF 118 (234)
Q Consensus 61 ~~~~~l~~~l~~~~-~~~~~iIf~~t~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~--------------------T~~~ 118 (234)
.|+..+.+++.+.. .+.++||||++++.++.+...|... |+.+..+||++++++ |++.
T Consensus 325 ~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~ 404 (500)
T 1z63_A 325 GKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAG 404 (500)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC
T ss_pred hhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccc
Confidence 45555666665332 4678999999999999999999885 999999999998655 7899
Q ss_pred ccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCceEE--EEEeeccc
Q psy4494 119 GLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHC--ILYYRLPD 166 (234)
Q Consensus 119 ~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~--i~~~~~~d 166 (234)
++|+|++.+++||+||+|+++..|.|++||++|.|+...+ +.++....
T Consensus 405 ~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 405 GFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp -CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred cCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 9999999999999999999999999999999998876544 44555543
No 67
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.41 E-value=1.2e-12 Score=122.64 Aligned_cols=92 Identities=15% Similarity=0.059 Sum_probs=82.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh---------------------hhhcccCCCCCCccEEEEe
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---------------------SIAFGLGIDKPNVRFVIHH 133 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~---------------------T~~~~~Gid~~~v~~Vi~~ 133 (234)
.+.++|||+++++.++.+...|...|+.+..+||+++.++ |.+.|+|+|++++++||+|
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~ 494 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMF 494 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEEC
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEE
Confidence 4679999999999999999999999999999999998765 8899999999999999999
Q ss_pred ecCCCHhHhhhhhcccccCCCce--EEEEEeeccc
Q psy4494 134 CLSKSMENFYQESGRAGRDGQIA--HCILYYRLPD 166 (234)
Q Consensus 134 ~~P~~~~~y~qr~GR~gR~g~~~--~~i~~~~~~d 166 (234)
|+|+++..|.|++||++|.|+.. ..+-++....
T Consensus 495 d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 495 DPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGT 529 (644)
T ss_dssp SCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred CCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCC
Confidence 99999999999999999998764 4444555543
No 68
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.40 E-value=7.5e-13 Score=134.96 Aligned_cols=161 Identities=15% Similarity=0.158 Sum_probs=106.6
Q ss_pred hhhccCchh-HHHHhhCCCCCcEEEEEeeccC-CCcceEEEEEEcCCChHHHHHHH----HHHHHhhcCCCcEEEEecch
Q psy4494 13 LWRTSFYQV-SIAFGLGIDKPNVRFVIHHCLS-KSMENFYQVRIKPAAQKDCLDEL----ADLMSRRFRNQSGIIYTTSI 86 (234)
Q Consensus 13 l~~at~p~~-~i~~~~~~~~~~i~~~~~~~~~-~~~~~~y~v~~~~~~~~~~~~~l----~~~l~~~~~~~~~iIf~~t~ 86 (234)
.+|||.|+. .++..++.+++.-.+.+....+ -.+..++... ...........+ ...+.+.....++||||+|+
T Consensus 249 ~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR 327 (1724)
T 4f92_B 249 GLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGI-TEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSR 327 (1724)
T ss_dssp EEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEE-CCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSST
T ss_pred EEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEecc-CCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCH
Confidence 468999886 4555566554332222222221 1223222221 222222222222 33333334567899999999
Q ss_pred HHHHHHHHHHHHc-------------------------------------CCceeeeccCCCchh---------------
Q psy4494 87 KECEDLREELRNR-------------------------------------GLRVSAYHAKLESNV--------------- 114 (234)
Q Consensus 87 ~~~~~l~~~L~~~-------------------------------------~~~~~~~h~~~~~~~--------------- 114 (234)
+.|+.+|..|.+. ..-+.++||+|++++
T Consensus 328 ~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~v 407 (1724)
T 4f92_B 328 KETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQV 407 (1724)
T ss_dssp TTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeE
Confidence 9999999988631 112678999999977
Q ss_pred ---hhhcccCCCCCCccEEEE----eec------CCCHhHhhhhhcccccCC--CceEEEEEeecccHHHhhhhH
Q psy4494 115 ---SIAFGLGIDKPNVRFVIH----HCL------SKSMENFYQESGRAGRDG--QIAHCILYYRLPDVFKLSSMV 174 (234)
Q Consensus 115 ---T~~~~~Gid~~~v~~Vi~----~~~------P~~~~~y~qr~GR~gR~g--~~~~~i~~~~~~d~~~~~~~~ 174 (234)
|+++++|+|+|.++.||. |+. |-++.+|+||+|||||.| ..|.++++.++.+......++
T Consensus 408 lvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll 482 (1724)
T 4f92_B 408 LVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLL 482 (1724)
T ss_dssp EEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHT
T ss_pred EEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHH
Confidence 999999999999999985 543 458899999999999976 479999999988766555443
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.28 E-value=1.4e-11 Score=117.96 Aligned_cols=105 Identities=19% Similarity=0.155 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhhc-CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh---------------------hhhcc
Q psy4494 62 CLDELADLMSRRF-RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---------------------SIAFG 119 (234)
Q Consensus 62 ~~~~l~~~l~~~~-~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~---------------------T~~~~ 119 (234)
|+..|.+++.... .+.++|||+.....++.+...|...|+++..+||+++.++ |.+.|
T Consensus 557 K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg 636 (800)
T 3mwy_W 557 KMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGG 636 (800)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHT
T ss_pred HHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccccc
Confidence 5555666665322 4679999999999999999999999999999999998765 88999
Q ss_pred cCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCc--eEEEEEeeccc
Q psy4494 120 LGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQI--AHCILYYRLPD 166 (234)
Q Consensus 120 ~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~--~~~i~~~~~~d 166 (234)
.|+|++.+++||+||+|+++..+.|++||+.|.|+. ...+.|+....
T Consensus 637 ~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 637 LGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp TTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred CCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 999999999999999999999999999999998875 44455566543
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.70 E-value=6.2e-08 Score=94.82 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=43.8
Q ss_pred hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccccCCCc----eEEEEEeec
Q psy4494 115 SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQI----AHCILYYRL 164 (234)
Q Consensus 115 T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~gR~g~~----~~~i~~~~~ 164 (234)
|+.+.+|+|+|.+ .|+++|.|.+...|+|++||++|.+.. |.++.|.+.
T Consensus 656 vd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 656 VGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp SSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred cchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 8889999999999 789999999999999999999997653 888887764
No 71
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.31 E-value=5.1e-06 Score=79.35 Aligned_cols=39 Identities=31% Similarity=0.337 Sum_probs=35.8
Q ss_pred EEEEeecCCCHhHhhhhhcccccCCCceEEEEEeecccH
Q psy4494 129 FVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDV 167 (234)
Q Consensus 129 ~Vi~~~~P~~~~~y~qr~GR~gR~g~~~~~i~~~~~~d~ 167 (234)
+||--..+.|..-=.|-.||+||.|.+|.+.+|++-.|-
T Consensus 662 hVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeDd 700 (997)
T 2ipc_A 662 FIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDD 700 (997)
T ss_dssp CEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSSH
T ss_pred EEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECChH
Confidence 799888999999889999999999999999999998763
No 72
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.23 E-value=0.00057 Score=62.40 Aligned_cols=70 Identities=13% Similarity=0.091 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCch-h----------------hhhcccCCCCC
Q psy4494 63 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN-V----------------SIAFGLGIDKP 125 (234)
Q Consensus 63 ~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~-~----------------T~~~~~Gid~~ 125 (234)
...|.+++.. .++.++||++|.+..+.+++.|.. .+ ...+|..... + |..+..|||+|
T Consensus 373 ~~~l~~~~~~--~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~~~~~~~l~~f~~~~~il~~V~~~~~~EGiD~~ 447 (540)
T 2vl7_A 373 SILLKRIYEN--SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKKTRHEEVLELMKTGKYLVMLVMRAKESEGVEFR 447 (540)
T ss_dssp HHHHHHHHHT--CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTTCCHHHHHHHHHTSCCEEEEEC-----------
T ss_pred HHHHHHHHHh--CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCCCcHHHHHHHHhcCCeEEEEEecCceecceecC
Confidence 3344444432 467899999999999999998864 22 3445543222 1 67788999999
Q ss_pred C----ccEEEEeecCC
Q psy4494 126 N----VRFVIHHCLSK 137 (234)
Q Consensus 126 ~----v~~Vi~~~~P~ 137 (234)
+ +++||++++|-
T Consensus 448 ~~~~~~~~Vii~~lPf 463 (540)
T 2vl7_A 448 EKENLFESLVLAGLPY 463 (540)
T ss_dssp ----CEEEEEEESCCC
T ss_pred CCcccccEEEEECCCC
Confidence 7 89999999993
No 73
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.23 E-value=0.036 Score=47.24 Aligned_cols=106 Identities=12% Similarity=0.030 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh-------------hhhcccCCC-----
Q psy4494 62 CLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-------------SIAFGLGID----- 123 (234)
Q Consensus 62 ~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~-------------T~~~~~Gid----- 123 (234)
.+..|...+++ .+.+++||++..+..+-+-.+|...++...-+-|....++ |.+-|-|++
T Consensus 113 ~L~~LL~~l~~--~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k~~~~~~~i~Lltsag~~gin~~~~n 190 (328)
T 3hgt_A 113 VLRDLINLVQE--YETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAAANDFSCTVHLFSSEGINFTKYPIKS 190 (328)
T ss_dssp HHHHHHHHHTT--SCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-------CCSEEEEEEESSCCCTTTSCCCC
T ss_pred HHHHHHHHHHh--CCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhhcccCCceEEEEECCCCCCcCccccc
Confidence 34444444433 4679999999999999999999999988888887744322 555566776
Q ss_pred CCCccEEEEeecCCCHhH-hhhhhcccccC----CCceEEEEEeecccHHH
Q psy4494 124 KPNVRFVIHHCLSKSMEN-FYQESGRAGRD----GQIAHCILYYRLPDVFK 169 (234)
Q Consensus 124 ~~~v~~Vi~~~~P~~~~~-y~qr~GR~gR~----g~~~~~i~~~~~~d~~~ 169 (234)
....+.||-||.-+++.. .+|.+-|+-|. +++...+-+++.+..+.
T Consensus 191 l~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 191 KARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred CCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 567899999999988885 58877777775 34667777777765554
No 74
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=92.95 E-value=0.67 Score=42.83 Aligned_cols=115 Identities=13% Similarity=0.142 Sum_probs=60.8
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh-----------------h--hhcccCCCCCC--ccEEEEe
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV-----------------S--IAFGLGIDKPN--VRFVIHH 133 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~-----------------T--~~~~~Gid~~~--v~~Vi~~ 133 (234)
.++.++||++|.+..+.+++.|+. +... ...+++... + ..+..|||+++ .+.||..
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~ 523 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFRRDHGTIFAVSGGRLSEGINFPGNELEMIILA 523 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHTTSCCEEEEETTSCC--------CCCCEEEES
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhccCCcEEEEEecCceeccccCCCCceEEEEEE
Confidence 367799999999999999988862 2111 222332111 2 36778999985 5789998
Q ss_pred ecCCC-----------------------------HhHhhhhhcccccCCCceEEEEEeecccHHHhhhhHHhhhhhhHhH
Q psy4494 134 CLSKS-----------------------------MENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSMVFDQQTGLANL 184 (234)
Q Consensus 134 ~~P~~-----------------------------~~~y~qr~GR~gR~g~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~l 184 (234)
++|-. +....|-+||.=|....--++++.+..= ..+...+-.-+.....+
T Consensus 524 ~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~-~~~~~~LP~~~~~~~~~ 602 (620)
T 4a15_A 524 GLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKRA-GQFRKFIPDMKKTSDPA 602 (620)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGGG-GGGGGGSTTCEEESCHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccch-HHHHHhCCchhhhcCcH
Confidence 88732 1122588999999655433444444322 22222221112223447
Q ss_pred HHHHHHhhc
Q psy4494 185 YNIVSYCLD 193 (234)
Q Consensus 185 ~~~~~~~~~ 193 (234)
+++.+|+.+
T Consensus 603 ~~~~~f~~~ 611 (620)
T 4a15_A 603 SDIYNFFIS 611 (620)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 788888753
No 75
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=89.49 E-value=0.51 Score=32.90 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=32.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 111 (234)
+..++++||.+-..+...+..|+..|+++..+.||+.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 4568999999988999999999999999999988875
No 76
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=86.81 E-value=0.91 Score=32.36 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=30.6
Q ss_pred CcEEEEe-cchHHHHHHHHHHHHcCCceeeeccCCC
Q psy4494 77 QSGIIYT-TSIKECEDLREELRNRGLRVSAYHAKLE 111 (234)
Q Consensus 77 ~~~iIf~-~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 111 (234)
.++|+|| .+-..+..++..|+..|+++..+.|++.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 7899999 5777888999999999999999988874
No 77
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=86.14 E-value=5.8 Score=35.76 Aligned_cols=60 Identities=8% Similarity=-0.032 Sum_probs=41.1
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh---------------h--hhcccCCCCC-----CccEEEE
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV---------------S--IAFGLGIDKP-----NVRFVIH 132 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~---------------T--~~~~~Gid~~-----~v~~Vi~ 132 (234)
.++.++||++|.+..+.+++. .+.++..-..+++..+ + ..+..|||+| ..+.||.
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI 468 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSSVEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVI 468 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCCHHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEE
T ss_pred CCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCCHHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEE
Confidence 467899999999999999873 3444333222333211 2 4678899999 3788998
Q ss_pred eecCC
Q psy4494 133 HCLSK 137 (234)
Q Consensus 133 ~~~P~ 137 (234)
.++|-
T Consensus 469 ~~lPf 473 (551)
T 3crv_A 469 VGIPY 473 (551)
T ss_dssp ESCCC
T ss_pred EcCCC
Confidence 88773
No 78
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=85.35 E-value=0.89 Score=30.60 Aligned_cols=35 Identities=9% Similarity=0.007 Sum_probs=31.3
Q ss_pred CcEEEEecchHHHHHHHHHHHHcCCceeeeccCCC
Q psy4494 77 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 111 (234)
Q Consensus 77 ~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 111 (234)
.+.++||.+-..+...+..|+..|+++..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 77999999988899999999999999888888875
No 79
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=84.57 E-value=2.6 Score=27.54 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=29.6
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
+..+.++||.+-..+...+..|+..|++ +..+ |++.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 4678999999988899999999999986 5555 7764
No 80
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=84.52 E-value=1.3 Score=30.57 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=31.5
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
+..+++|||.+-..+..++..|+..|++ +..+.|++.
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 4678999999988899999999999995 778888764
No 81
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=84.45 E-value=0.81 Score=31.22 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=32.4
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 111 (234)
+..+.++||.+-..+...+..|+..|+++..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4568999999999999999999999998888888764
No 82
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=83.78 E-value=0.88 Score=32.45 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=31.3
Q ss_pred CCCcEEEEecchHH--HHHHHHHHHHcCCceeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKE--CEDLREELRNRGLRVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~--~~~l~~~L~~~~~~~~~~h~~~~ 111 (234)
+..+++|||.+-.. +..++..|+..|+++..+.||+.
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 45679999998776 78999999999999888888874
No 83
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=83.20 E-value=0.8 Score=31.41 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=32.3
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 111 (234)
+..++++||.+-..+...+..|+..|+++..+.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4567999999988899999999999999888888874
No 84
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=82.38 E-value=0.9 Score=31.53 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=31.8
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 111 (234)
+.++.++||.+-..+...+..|+..|+++..+.||+.
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 4567999999988899999999999999888888764
No 85
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=82.01 E-value=1.5 Score=30.30 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=31.7
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
+..++++||.+-..+...+..|+..|++ +..+.|++.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 4567999999998999999999999995 888888764
No 86
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=79.41 E-value=2.6 Score=29.15 Aligned_cols=38 Identities=5% Similarity=0.103 Sum_probs=32.2
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCc
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~ 112 (234)
+..+++|||.+-..+..++..|+..|++...+.|++..
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~~ 92 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVYD 92 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHHH
Confidence 46789999999889999999999999866777788753
No 87
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=75.81 E-value=2 Score=31.54 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=32.2
Q ss_pred CCCcEEEEecch--HHHHHHHHHHHHcCCceeeeccCCCc
Q psy4494 75 RNQSGIIYTTSI--KECEDLREELRNRGLRVSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t~--~~~~~l~~~L~~~~~~~~~~h~~~~~ 112 (234)
+..++||||.+- ..+..++..|+..|+++..+.||+..
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~~ 110 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEY 110 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHHH
Confidence 356789999987 57889999999999999999998853
No 88
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=75.66 E-value=2.3 Score=30.42 Aligned_cols=37 Identities=14% Similarity=0.086 Sum_probs=31.7
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
+..++++||.+-..+..++..|+..|++ +..+.|++.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4578999999988899999999999985 888888874
No 89
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=75.26 E-value=2.2 Score=30.74 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=31.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
+..+++|||.+-..+..++..|+..|++ +..+.|++.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4578999999988889999999999995 888888874
No 90
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=74.58 E-value=3 Score=30.55 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=31.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
+..++||||.+-..+..++..|+..|++ +..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 4578999999887888999999999994 889999985
No 91
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=73.71 E-value=2.6 Score=30.45 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=31.5
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
+..++++||.+-..+..++..|+..|++ +..|.|++.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 3567899999988899999999999995 888888864
No 92
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=73.25 E-value=2.4 Score=30.76 Aligned_cols=37 Identities=8% Similarity=0.237 Sum_probs=32.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCC-ceeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~h~~~~ 111 (234)
+..+++|||.+-..+...+..|+..|+ ++..+.|++.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 467899999998889999999999999 4888888875
No 93
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=72.49 E-value=3.5 Score=30.06 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=31.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
+..++++||.+-..+..++..|+..|++ +..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 3567899999988999999999999985 777777774
No 94
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=67.56 E-value=4 Score=29.31 Aligned_cols=37 Identities=19% Similarity=0.100 Sum_probs=31.6
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
+..+++|||.+=......+..|+..|++ +..+.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3568999999988888999999999995 888889984
No 95
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=65.35 E-value=21 Score=27.29 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=32.3
Q ss_pred CCcEEEEecchHHHHHHHHHHHHc-----CCceeeeccCCCchh
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNR-----GLRVSAYHAKLESNV 114 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~ 114 (234)
..++||.++|+.-++.+++.++.. ++++..++|+.+...
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~ 125 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKK 125 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHH
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHH
Confidence 347999999999999999888765 688999999887543
No 96
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=64.21 E-value=12 Score=30.25 Aligned_cols=38 Identities=13% Similarity=0.044 Sum_probs=32.7
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCCc
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 112 (234)
..+++|+||.+=..+...+..|+..|++ +..|.|++..
T Consensus 229 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 229 YDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE 267 (280)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred CCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHH
Confidence 4578999999988899999999999994 8899999863
No 97
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=63.00 E-value=36 Score=26.76 Aligned_cols=40 Identities=10% Similarity=0.173 Sum_probs=32.5
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCchh
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLESNV 114 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~ 114 (234)
...++||.++|+.-+..+++.++.. ++.+..++|+.+...
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 153 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMS 153 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHH
Confidence 3457999999999999999888754 788899999887543
No 98
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=61.72 E-value=11 Score=30.40 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=31.2
Q ss_pred CCCcEEEEecchHHHHHHHHHHH-HcCC-ceeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELR-NRGL-RVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~-~~~~-~~~~~h~~~~ 111 (234)
..+++||||.+-..+...+..|+ ..|+ .+..|.|++.
T Consensus 232 ~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 270 (285)
T 1uar_A 232 KDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWT 270 (285)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHH
Confidence 45679999999888888999998 8898 5888888874
No 99
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=57.87 E-value=15 Score=30.00 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=32.5
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCC-ceeeeccCCCc
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~h~~~~~ 112 (234)
+.+++++||.+-..+...+..|+..|+ .+..+.||+..
T Consensus 180 kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~a 218 (265)
T 4f67_A 180 KDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGILN 218 (265)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHHH
Confidence 567899999999999999999999998 47778887753
No 100
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=57.19 E-value=7.1 Score=28.81 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=30.2
Q ss_pred CCcEEEEecch---------HHHHHHHHHHHHcCCceeeeccCCC
Q psy4494 76 NQSGIIYTTSI---------KECEDLREELRNRGLRVSAYHAKLE 111 (234)
Q Consensus 76 ~~~~iIf~~t~---------~~~~~l~~~L~~~~~~~~~~h~~~~ 111 (234)
..++||||.+- ..+..++..|...|+++..+.||+.
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~ 137 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 137 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHH
Confidence 56899999876 3578889999999999999999875
No 101
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=56.72 E-value=8.1 Score=31.06 Aligned_cols=37 Identities=8% Similarity=0.003 Sum_probs=31.5
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
+.+++|+||.+-..+..++..|+..|++ +..|.|++.
T Consensus 222 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 259 (271)
T 1e0c_A 222 PDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWG 259 (271)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 4578999999988889999999999995 888888764
No 102
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=55.23 E-value=29 Score=26.62 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=28.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc---CCceeeeccCCCchh
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR---GLRVSAYHAKLESNV 114 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~ 114 (234)
.+.++||.++|+.-++.+++.++.. ++.+..++|+.+...
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNG 135 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHH
Confidence 4567899999999999999999874 677888888876544
No 103
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=55.21 E-value=57 Score=24.26 Aligned_cols=40 Identities=10% Similarity=0.031 Sum_probs=31.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc-----CCceeeeccCCCchh
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR-----GLRVSAYHAKLESNV 114 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~ 114 (234)
...++||.++|+.-++.+++.++.. +..+..++|+.+...
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 114 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRD 114 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHH
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHH
Confidence 3457999999999999999888754 567888888876544
No 104
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=54.46 E-value=33 Score=28.45 Aligned_cols=38 Identities=11% Similarity=0.177 Sum_probs=32.0
Q ss_pred CCcEEEEecchHHHHHHHHHHHHc-----CCceeeeccCCCch
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNR-----GLRVSAYHAKLESN 113 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~ 113 (234)
..++||.++|+.-++.+++.++.. ++++..++|+.+..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 118 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIK 118 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHH
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHH
Confidence 458999999999999999888764 78899999987643
No 105
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=53.87 E-value=32 Score=26.76 Aligned_cols=63 Identities=5% Similarity=0.076 Sum_probs=42.1
Q ss_pred CCcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCchh-hhhcccCCCCCCccEEEEeecCCCHhHhhhh
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLESNV-SIAFGLGIDKPNVRFVIHHCLSKSMENFYQE 145 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~-T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr 145 (234)
+.++||.++|+.-++.+++.++.. ++.+..++|+.+... ...+..|. +.+ +..|..+.+++++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~I~--v~Tp~~l~~~l~~ 169 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV-----EIC--IATPGRLIDFLEC 169 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCC-----SEE--EECHHHHHHHHHH
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCC-----CEE--EECHHHHHHHHHc
Confidence 557999999999999998877653 788999999887654 22222332 222 3556555555543
No 106
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=52.66 E-value=42 Score=25.47 Aligned_cols=39 Identities=5% Similarity=0.071 Sum_probs=28.4
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCch
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLESN 113 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~ 113 (234)
...++||.++|+..++.+++.++.. ++.+..++|+.+..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 123 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFV 123 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-----
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchH
Confidence 4568999999999999999888754 67788888887654
No 107
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=52.49 E-value=11 Score=29.57 Aligned_cols=37 Identities=22% Similarity=0.175 Sum_probs=31.7
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 111 (234)
..+++|+||.+-..+..++..|+..|.++..|.|++.
T Consensus 183 ~~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~ 219 (230)
T 2eg4_A 183 PGQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMH 219 (230)
T ss_dssp TTCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHH
T ss_pred CCCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHH
Confidence 4577999999999999999999999966888888774
No 108
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=50.78 E-value=23 Score=28.40 Aligned_cols=37 Identities=11% Similarity=-0.002 Sum_probs=29.1
Q ss_pred CCCcEEEEecch-HHHHHHHHHHHHcCC-ceeeeccCCC
Q psy4494 75 RNQSGIIYTTSI-KECEDLREELRNRGL-RVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~-~~~~~l~~~L~~~~~-~~~~~h~~~~ 111 (234)
+..+++|||.+- ..+..++..|+..|+ ++..+.|++.
T Consensus 76 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~ 114 (277)
T 3aay_A 76 NEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRK 114 (277)
T ss_dssp TTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHHH
T ss_pred CCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCHH
Confidence 456789999874 357788889999999 5888888864
No 109
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=50.60 E-value=15 Score=26.17 Aligned_cols=64 Identities=11% Similarity=-0.090 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCCceeeeccCCCchh-hhhcccCCCCCCccEEEEeecCCCHhHhhhhhcccc
Q psy4494 87 KECEDLREELRNRGLRVSAYHAKLESNV-SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAG 150 (234)
Q Consensus 87 ~~~~~l~~~L~~~~~~~~~~h~~~~~~~-T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr~GR~g 150 (234)
+-...+.++|.+.|+++.+.|-....-. ..+...=-|+|++++|+.+-.|.....++.++++.|
T Consensus 18 ~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~vDlavi~~p~~~v~~~v~e~~~~g 82 (122)
T 3ff4_A 18 RYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEGVDTVTLYINPQNQLSEYNYILSLK 82 (122)
T ss_dssp SHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTTCCEEEECSCHHHHGGGHHHHHHHC
T ss_pred CHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCCCCEEEEEeCHHHHHHHHHHHHhcC
Confidence 4567888888888888887775532211 112222336667899999998888999999998875
No 110
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=49.34 E-value=27 Score=28.00 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=30.6
Q ss_pred CCCcEEEEecchHHHHHHHHHHHH-cCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRN-RGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~-~~~~-~~~~h~~~~ 111 (234)
..+++|+||.+-..+..++..|++ .|++ +..|.|++.
T Consensus 225 ~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 263 (277)
T 3aay_A 225 NSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWT 263 (277)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred CCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchHH
Confidence 457899999998888888889985 8985 888888864
No 111
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=48.58 E-value=15 Score=30.59 Aligned_cols=38 Identities=13% Similarity=0.175 Sum_probs=31.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHH-cCCc-eeeeccCCCc
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRN-RGLR-VSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~-~~~~-~~~~h~~~~~ 112 (234)
..+++|+||.+=..+...+..|.+ .|++ +..|.|++..
T Consensus 258 ~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~~~ 297 (318)
T 3hzu_A 258 PDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWTE 297 (318)
T ss_dssp TTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHHHH
T ss_pred CCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcHHH
Confidence 457899999999999999999987 8985 8888888753
No 112
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=47.92 E-value=28 Score=30.02 Aligned_cols=38 Identities=11% Similarity=0.240 Sum_probs=32.2
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCC-ceeeeccCCCc
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~h~~~~~ 112 (234)
+..++|+||.+-..+..++..|+..|+ .+..|.|++..
T Consensus 202 ~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~~ 240 (423)
T 2wlr_A 202 HDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQT 240 (423)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHHH
T ss_pred CCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHHH
Confidence 456799999998889999999999998 58889988753
No 113
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=47.75 E-value=52 Score=24.47 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=32.4
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc--CCceeeeccCCCchh
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR--GLRVSAYHAKLESNV 114 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~ 114 (234)
...++||.++|+..+..+++.++.. .+++..++|+.+...
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGK 112 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHH
Confidence 3567999999999999999999876 467888888876543
No 114
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=47.12 E-value=26 Score=29.06 Aligned_cols=37 Identities=14% Similarity=0.052 Sum_probs=30.3
Q ss_pred CCCcEEEEecchH-HHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIK-ECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~-~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
+..++||||.+-. .+..++..|+..|++ +..+.|++.
T Consensus 110 ~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~ 148 (318)
T 3hzu_A 110 RDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGRD 148 (318)
T ss_dssp TTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCHH
Confidence 4578999998765 788899999999995 888888764
No 115
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=46.54 E-value=19 Score=28.95 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=30.8
Q ss_pred CCCcEEEEecchHH-HHHHHHHHHHcCC-ceeeeccCCCc
Q psy4494 75 RNQSGIIYTTSIKE-CEDLREELRNRGL-RVSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t~~~-~~~l~~~L~~~~~-~~~~~h~~~~~ 112 (234)
+..++||||.+-.. +..++..|+..|+ ++..+.|++..
T Consensus 85 ~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~~ 124 (280)
T 1urh_A 85 QDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAG 124 (280)
T ss_dssp TTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHH
Confidence 45679999987555 8889999999999 58888888754
No 116
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=45.74 E-value=34 Score=26.34 Aligned_cols=40 Identities=8% Similarity=0.080 Sum_probs=33.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc-----CCceeeeccCCCchh
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR-----GLRVSAYHAKLESNV 114 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~ 114 (234)
...++||.++|+.-++.+++.++.. ++++..++|+.+...
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 135 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQ 135 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHH
Confidence 3568999999999999999998864 677888999887654
No 117
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=45.59 E-value=50 Score=22.39 Aligned_cols=29 Identities=7% Similarity=0.142 Sum_probs=24.3
Q ss_pred CCCcEEEEec------chHHHHHHHHHHHHcCCce
Q psy4494 75 RNQSGIIYTT------SIKECEDLREELRNRGLRV 103 (234)
Q Consensus 75 ~~~~~iIf~~------t~~~~~~l~~~L~~~~~~~ 103 (234)
...+++||.. ..-.|..+.++|.+.|++.
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~ 50 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPF 50 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCC
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCc
Confidence 4568999987 4899999999999888663
No 118
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=45.54 E-value=21 Score=29.12 Aligned_cols=37 Identities=11% Similarity=-0.080 Sum_probs=31.1
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
..+++|+||.+=..+...+..|...|++ +..|.|++.
T Consensus 239 ~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~ 276 (296)
T 1rhs_A 239 LTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWF 276 (296)
T ss_dssp TTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 4678999999988888888999999985 888888775
No 119
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=44.98 E-value=35 Score=26.54 Aligned_cols=33 Identities=12% Similarity=0.066 Sum_probs=28.1
Q ss_pred CCcEEEEecchH-HHHHHHHHHHHcCCc-eeeeccC
Q psy4494 76 NQSGIIYTTSIK-ECEDLREELRNRGLR-VSAYHAK 109 (234)
Q Consensus 76 ~~~~iIf~~t~~-~~~~l~~~L~~~~~~-~~~~h~~ 109 (234)
..+++|||.+-. .+..++..|+ .|++ +..+.|+
T Consensus 61 ~~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 61 RSPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp CSSEEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred CCEEEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 578999998876 7889999999 9995 8888887
No 120
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=43.68 E-value=60 Score=27.34 Aligned_cols=38 Identities=5% Similarity=0.243 Sum_probs=34.4
Q ss_pred CCCcEEEEecchHHHHHHHHHHHH---cCCceeeeccCCCc
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRN---RGLRVSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~---~~~~~~~~h~~~~~ 112 (234)
.+.++||-++|+.-+..+++.++. .++++..+||+.+.
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~ 103 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKK 103 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCCh
Confidence 567899999999999999999998 58899999999986
No 121
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=43.21 E-value=13 Score=26.34 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=28.1
Q ss_pred CCcEEEEecchHH---------HHHHHHHHHHcCCceeeeccCCC
Q psy4494 76 NQSGIIYTTSIKE---------CEDLREELRNRGLRVSAYHAKLE 111 (234)
Q Consensus 76 ~~~~iIf~~t~~~---------~~~l~~~L~~~~~~~~~~h~~~~ 111 (234)
..+++|||.+-.. +..++..|...|+++..+.|++.
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~~ 127 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 127 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCHH
Confidence 4679999987554 35677888889988888888874
No 122
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=43.02 E-value=15 Score=33.14 Aligned_cols=37 Identities=11% Similarity=0.005 Sum_probs=32.4
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 111 (234)
+.++.++||.+-..+...+..|+..|+++..+.|++.
T Consensus 540 ~~~~iv~~C~~g~rs~~a~~~l~~~G~~v~~l~GG~~ 576 (588)
T 3ics_A 540 VDKDIYITCQLGMRGYVAARMLMEKGYKVKNVDGGFK 576 (588)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCcEEEEcchHH
Confidence 4568999999999999999999999999888888764
No 123
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=42.87 E-value=30 Score=27.79 Aligned_cols=38 Identities=8% Similarity=0.048 Sum_probs=30.3
Q ss_pred CCCcEEEEecchH-HHHHHHHHHHHcCCc-eeeeccCCCc
Q psy4494 75 RNQSGIIYTTSIK-ECEDLREELRNRGLR-VSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t~~-~~~~l~~~L~~~~~~-~~~~h~~~~~ 112 (234)
+..++++||.+-. .+..++..|+..|++ +..+.|++..
T Consensus 78 ~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~ 117 (285)
T 1uar_A 78 NDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQK 117 (285)
T ss_dssp TTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCHHH
Confidence 4567899998865 578889999999994 8888888753
No 124
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=42.82 E-value=23 Score=35.06 Aligned_cols=69 Identities=14% Similarity=-0.003 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccC--CCchh----hhhcccCCCCCCccEEEEe
Q psy4494 63 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK--LESNV----SIAFGLGIDKPNVRFVIHH 133 (234)
Q Consensus 63 ~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~--~~~~~----T~~~~~Gid~~~v~~Vi~~ 133 (234)
+..|.+.++... + +++|.+.|...++++.+.|.+.|+++..+|.. ..+.. ...+..|++.++.+.+|.-
T Consensus 374 ~~~L~~~~~~~~-g-rVli~~~s~~~~erL~~~L~e~gi~~~~~~~~~~~~~~~~~i~~~~L~~Gf~l~~~~~~~~~ 448 (1151)
T 2eyq_A 374 LDALRKFLETFD-G-PVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALIC 448 (1151)
T ss_dssp THHHHHHHTTCC-S-CCCEEESSHHHHHHHHHHHGGGTCCCEECSSGGGCCTTCCEEEECCCCSCEEETTTTEEEEE
T ss_pred HHHHHHHHHHhC-C-cEEEEECCHHHHHHHHHHHHhcCCCceeccCHhhcCCCceEEEEeccccccccCCCCEEEEE
Confidence 456666665432 5 89999999999999999999999987666631 11111 3456678888877776643
No 125
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=42.73 E-value=28 Score=27.77 Aligned_cols=38 Identities=11% Similarity=-0.009 Sum_probs=30.4
Q ss_pred CCCcEEEEecchH-HHHHHHHHHHHcCCc-eeeeccCCCc
Q psy4494 75 RNQSGIIYTTSIK-ECEDLREELRNRGLR-VSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t~~-~~~~l~~~L~~~~~~-~~~~h~~~~~ 112 (234)
+..+++|||.+-. .+..++..|+..|++ +..+.|++..
T Consensus 80 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~~ 119 (271)
T 1e0c_A 80 PEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTA 119 (271)
T ss_dssp TTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHHHH
T ss_pred CCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCHHH
Confidence 4567899998765 788899999999995 7788888654
No 126
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=42.64 E-value=66 Score=24.98 Aligned_cols=38 Identities=11% Similarity=0.078 Sum_probs=30.8
Q ss_pred CcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCchh
Q psy4494 77 QSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLESNV 114 (234)
Q Consensus 77 ~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~ 114 (234)
.++||.++|+.-+..+++.++.. ++.+..++|+.+...
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 142 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHS 142 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH
Confidence 57999999999999999888754 567788888876544
No 127
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=42.47 E-value=11 Score=26.13 Aligned_cols=34 Identities=9% Similarity=-0.049 Sum_probs=27.8
Q ss_pred cEEEEecchHHHHHHHHHHHHc------CC-ceeeeccCCC
Q psy4494 78 SGIIYTTSIKECEDLREELRNR------GL-RVSAYHAKLE 111 (234)
Q Consensus 78 ~~iIf~~t~~~~~~l~~~L~~~------~~-~~~~~h~~~~ 111 (234)
++++||.+-..+...+..|... |+ ++..+.|++.
T Consensus 74 ~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~ 114 (127)
T 3i2v_A 74 PIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLM 114 (127)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHH
T ss_pred eEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHH
Confidence 7999999988888899999888 34 5777878764
No 128
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=41.07 E-value=1e+02 Score=25.87 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=33.5
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc-CC---ceeeeccCCCch
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR-GL---RVSAYHAKLESN 113 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~-~~---~~~~~h~~~~~~ 113 (234)
...++||.++++.-++.+++.+... +. ++..+||+....
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~ 93 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPE 93 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchh
Confidence 5778999999999999999999876 55 899999998764
No 129
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=40.67 E-value=20 Score=31.95 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=32.5
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~ 111 (234)
+.++.++||.+-..+...+..|+..|+++..+.|++.
T Consensus 523 ~~~~iv~~c~~g~rs~~a~~~l~~~G~~v~~l~gG~~ 559 (565)
T 3ntd_A 523 KDKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGGYR 559 (565)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred CcCeEEEEeCCchHHHHHHHHHHHcCCCEEEEcChHH
Confidence 4567999999999999999999999999888888764
No 130
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=38.64 E-value=67 Score=27.92 Aligned_cols=38 Identities=8% Similarity=0.181 Sum_probs=32.7
Q ss_pred CCcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCch
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLESN 113 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~ 113 (234)
+.++||.++|+.-+..+...++.. ++++..+||+.+..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 93 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDS 93 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcch
Confidence 678999999999999988888765 89999999998654
No 131
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=38.36 E-value=42 Score=26.01 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=28.0
Q ss_pred CCcEEEEecchHHHHHHHHHHHHc----CCceeeeccCC
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKL 110 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~ 110 (234)
+.++||.++|+.-+..+++.++.. ++.+..++|+.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~ 136 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAA 136 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCc
Confidence 457999999999999999999865 66676666654
No 132
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=38.20 E-value=40 Score=24.46 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhcCCCcEEE-Ee-cchHHHH----HHHHHHHHcCC---ceeeeccCCC
Q psy4494 63 LDELADLMSRRFRNQSGII-YT-TSIKECE----DLREELRNRGL---RVSAYHAKLE 111 (234)
Q Consensus 63 ~~~l~~~l~~~~~~~~~iI-f~-~t~~~~~----~l~~~L~~~~~---~~~~~h~~~~ 111 (234)
+..+...+.. ...+.|| || .+-.... .++..|...|+ .+..+.||+.
T Consensus 56 ~~~l~~~l~~--~~~~~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~ 111 (152)
T 2j6p_A 56 YEKLAKTLFE--EKKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWE 111 (152)
T ss_dssp HHHHHHHHHH--TTCCEEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHH
T ss_pred HHHHHHHhcc--cCCCEEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHH
Confidence 4445444432 2344455 59 4433333 34477877886 5777888775
No 133
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=38.20 E-value=49 Score=30.04 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=35.8
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV 114 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 114 (234)
..+.+||.++++.-++..++.|+..|+++..++|+.+..+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~ 122 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEH 122 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHH
Confidence 3568999999999999999999999999999999987654
No 134
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=38.19 E-value=94 Score=23.87 Aligned_cols=38 Identities=5% Similarity=0.142 Sum_probs=27.7
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCc
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~ 112 (234)
...++||.++|+..+..+++.++.. ++.+..++|+.+.
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 138 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNV 138 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCch
Confidence 3568999999999999999998864 4667777777654
No 135
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=37.76 E-value=93 Score=25.56 Aligned_cols=39 Identities=5% Similarity=0.071 Sum_probs=31.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCch
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLESN 113 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~ 113 (234)
.+.++||.++++.-++.+++.+... ++.+..++|+.+..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 130 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFV 130 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHH
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchH
Confidence 4568999999999999999888753 67888899987753
No 136
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=37.73 E-value=24 Score=30.13 Aligned_cols=37 Identities=14% Similarity=-0.095 Sum_probs=31.0
Q ss_pred CCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCCc
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLES 112 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~~ 112 (234)
.+++|+||.+=..+...+..|+..|++ +..|.|++..
T Consensus 246 d~~ivvyC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~ 283 (373)
T 1okg_A 246 LSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSE 283 (373)
T ss_dssp CTTSEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCeeEeCChHHH
Confidence 567999999987888888899999995 8888888753
No 137
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=36.42 E-value=25 Score=28.90 Aligned_cols=37 Identities=11% Similarity=-0.073 Sum_probs=30.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCC-ceeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~h~~~~ 111 (234)
..+++|+||.+=..+...+..|+..|+ .+..|.|++.
T Consensus 253 ~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~ 290 (302)
T 3olh_A 253 LSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWV 290 (302)
T ss_dssp TTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHH
T ss_pred CCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHH
Confidence 357799999987778888888999998 5778888764
No 138
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=36.27 E-value=30 Score=30.98 Aligned_cols=38 Identities=11% Similarity=0.042 Sum_probs=32.6
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeecc-CCCc
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA-KLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~-~~~~ 112 (234)
+..++++||.+-..+...+..|+..|+++..+.| ++..
T Consensus 321 ~~~~ivv~c~~g~rs~~aa~~L~~~G~~v~~l~G~G~~~ 359 (539)
T 1yt8_A 321 RGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSEAD 359 (539)
T ss_dssp BTCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCGGG
T ss_pred CCCeEEEEeCCCCcHHHHHHHHHHcCCeEEEecCCChHH
Confidence 4678999999988888899999999999989999 8743
No 139
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=35.76 E-value=40 Score=24.52 Aligned_cols=38 Identities=8% Similarity=0.149 Sum_probs=24.2
Q ss_pred CCCcEEEEec-chHHHHHHHHHH--------HHcCC-ceeeeccCCCc
Q psy4494 75 RNQSGIIYTT-SIKECEDLREEL--------RNRGL-RVSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~-t~~~~~~l~~~L--------~~~~~-~~~~~h~~~~~ 112 (234)
+..++||||. +-......+..| +..|+ ++..+.|++..
T Consensus 84 ~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~ 131 (152)
T 1t3k_A 84 DKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNG 131 (152)
T ss_dssp SCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHH
T ss_pred CCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHH
Confidence 4567888998 544444444444 33687 57788888753
No 140
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=35.33 E-value=51 Score=24.98 Aligned_cols=38 Identities=5% Similarity=0.018 Sum_probs=30.4
Q ss_pred CCcEEEEecchHHHHHHHHHHHHc--------CCceeeeccCCCch
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNR--------GLRVSAYHAKLESN 113 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~--------~~~~~~~h~~~~~~ 113 (234)
..++||.++|+.-++++++.++.. ++.+..++|+.+..
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 117 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQ 117 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHH
Confidence 467999999999999999888753 56778888887644
No 141
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=34.73 E-value=45 Score=28.70 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=31.3
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCC-ceeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~h~~~~ 111 (234)
+.+++|+||.+=..+...+..|+..|+ ++..|.|++.
T Consensus 357 ~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~~ 394 (423)
T 2wlr_A 357 PEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWY 394 (423)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHHH
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccHH
Confidence 456789999998889999999999999 4888888874
No 142
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=33.90 E-value=51 Score=25.32 Aligned_cols=40 Identities=10% Similarity=-0.004 Sum_probs=31.2
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCchh
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLESNV 114 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~ 114 (234)
.+.++||.++|+.-+..+++.++.. ++.+..++|+.+...
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 139 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKH 139 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHH
Confidence 3567999999999999999998865 477888999876544
No 143
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=33.60 E-value=1.2e+02 Score=25.12 Aligned_cols=38 Identities=8% Similarity=0.076 Sum_probs=30.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCc
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~ 112 (234)
.+.++||.++++.-++.+++.++.. ++.+..++|+...
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 129 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNL 129 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCH
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcch
Confidence 3557999999999999999888754 6778888888764
No 144
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=32.89 E-value=26 Score=30.62 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=31.7
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
+.+++++||.+-..+...+..|+..|++ +..|.|++.
T Consensus 426 ~~~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~~ 463 (474)
T 3tp9_A 426 RDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYE 463 (474)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChHH
Confidence 4568999999998999999999999985 888888764
No 145
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=31.47 E-value=96 Score=29.27 Aligned_cols=40 Identities=3% Similarity=-0.102 Sum_probs=33.6
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCchh
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLESNV 114 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~ 114 (234)
.+.+++|-++|+.-++.+++.++.. ++++..+||+++..+
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~ 459 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSE 459 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHH
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHH
Confidence 3578999999999999988888754 789999999987654
No 146
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=31.37 E-value=90 Score=27.17 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=30.3
Q ss_pred CCcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCch
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLESN 113 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~ 113 (234)
..++||.++|+.-+..+.+.++.. ++++..+||+.+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 96 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSN 96 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC----
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcc
Confidence 678999999999999999888765 89999999998554
No 147
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=30.92 E-value=1.1e+02 Score=25.51 Aligned_cols=37 Identities=11% Similarity=0.105 Sum_probs=30.6
Q ss_pred CcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCch
Q psy4494 77 QSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLESN 113 (234)
Q Consensus 77 ~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~ 113 (234)
.++||.++|+.-+.++++.++.. ++.+..++|+.+..
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 142 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIG 142 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHH
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHH
Confidence 46899999999999999988753 67788899987653
No 148
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=30.91 E-value=1e+02 Score=20.94 Aligned_cols=29 Identities=7% Similarity=0.195 Sum_probs=24.0
Q ss_pred CCCcEEEEe------cchHHHHHHHHHHHHcCCce
Q psy4494 75 RNQSGIIYT------TSIKECEDLREELRNRGLRV 103 (234)
Q Consensus 75 ~~~~~iIf~------~t~~~~~~l~~~L~~~~~~~ 103 (234)
...+++||. ++.-.|..+.+.|.+.|+..
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y 48 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQF 48 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCC
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCe
Confidence 466899998 57889999999999888653
No 149
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=30.62 E-value=1.2e+02 Score=23.78 Aligned_cols=64 Identities=9% Similarity=0.048 Sum_probs=41.4
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCchh-hhhcccCCCCCCccEEEEeecCCCHhHhhhh
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLESNV-SIAFGLGIDKPNVRFVIHHCLSKSMENFYQE 145 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~-T~~~~~Gid~~~v~~Vi~~~~P~~~~~y~qr 145 (234)
.+.++||.++|+.-++++++.++.. +..+..++|+..... ...+..|.| . .+..|..+..++.+
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----I--iv~Tp~~l~~~~~~ 193 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGIN-----I--IVATPGRLLDHMQN 193 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCS-----E--EEECHHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCC-----E--EEEcHHHHHHHHHc
Confidence 3567899999999999999998864 566777888776544 222223322 2 33556555555544
No 150
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=29.85 E-value=88 Score=27.72 Aligned_cols=39 Identities=13% Similarity=0.226 Sum_probs=35.0
Q ss_pred CCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV 114 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 114 (234)
.+++||.++++.-+++....|+..|+.+..+||+.+..+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~ 103 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQ 103 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHH
Confidence 567999999999999999999999999999999987643
No 151
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=29.12 E-value=1.9e+02 Score=24.53 Aligned_cols=38 Identities=11% Similarity=0.037 Sum_probs=31.3
Q ss_pred CCcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCch
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLESN 113 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~ 113 (234)
..++||.++|+.-+..+++.++.. ++++..++|+.+..
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 170 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFR 170 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHH
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHH
Confidence 457999999999999999988864 56788889988754
No 152
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=28.95 E-value=1.4e+02 Score=24.10 Aligned_cols=37 Identities=3% Similarity=-0.054 Sum_probs=28.0
Q ss_pred CCcEEEEecchHHHHHHHHHHHHc-----CCceeeeccCCCc
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNR-----GLRVSAYHAKLES 112 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~-----~~~~~~~h~~~~~ 112 (234)
..++||.++|+.-+..++..++.. ++.+..++|+...
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~ 203 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKL 203 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccH
Confidence 347999999999999998888754 4566666666543
No 153
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=28.57 E-value=68 Score=25.03 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=31.0
Q ss_pred CCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCC
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLE 111 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~ 111 (234)
..+++|+++++.-++.+.+.+...++. +..++|+..
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~ 169 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK 169 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 678999999999999999999887777 888888764
No 154
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=28.35 E-value=1.4e+02 Score=24.78 Aligned_cols=39 Identities=10% Similarity=0.142 Sum_probs=31.4
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCch
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLESN 113 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~ 113 (234)
...++||.++|+.-+..+++.++.. ++.+..++|+....
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 146 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVG 146 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHH
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHH
Confidence 4578999999999999999988764 46777888887643
No 155
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=27.94 E-value=53 Score=28.32 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=34.4
Q ss_pred CCcEEEEecchHHHHHHHHHHHHcCCc-eeeeccCCCchh
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNRGLR-VSAYHAKLESNV 114 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~~~~-~~~~h~~~~~~~ 114 (234)
+.++||.|+++.-+..+.+.+...+++ +..+||+.....
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~~~ 172 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKELK 172 (472)
T ss_dssp CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCCcC
Confidence 578999999999999999999988888 999999886543
No 156
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=27.59 E-value=2e+02 Score=21.95 Aligned_cols=59 Identities=8% Similarity=0.206 Sum_probs=40.9
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh--hhhccc-CCCCCCccEEEEe
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--SIAFGL-GIDKPNVRFVIHH 133 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~--T~~~~~-Gid~~~v~~Vi~~ 133 (234)
.+.++++...+....+.+...+...+.++..+..+++..+ ..++.. --....++.|||.
T Consensus 28 ~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ 89 (247)
T 3lyl_A 28 KGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAIDILVNN 89 (247)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCCSEEEEC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3567788888888899999999888888888899888765 111110 0012357788875
No 157
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=26.83 E-value=2.3e+02 Score=22.95 Aligned_cols=37 Identities=8% Similarity=-0.027 Sum_probs=28.5
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~ 111 (234)
...++||.++|+.-++.+++.++.. ++.+..++++..
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~ 114 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSF 114 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSS
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCch
Confidence 4568999999999999999998863 455666666543
No 158
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=26.26 E-value=1.2e+02 Score=28.36 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=30.5
Q ss_pred CCcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCch
Q psy4494 76 NQSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLESN 113 (234)
Q Consensus 76 ~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~~ 113 (234)
+.++||.++|+.-+..+...++.. ++++..+||+.+..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~ 337 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSN 337 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC----
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchh
Confidence 678999999999999998888765 89999999998654
No 159
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=25.88 E-value=40 Score=29.91 Aligned_cols=68 Identities=15% Similarity=0.029 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccC--CCchh----hhhcccCCCCCCccEEEE
Q psy4494 63 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK--LESNV----SIAFGLGIDKPNVRFVIH 132 (234)
Q Consensus 63 ~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~--~~~~~----T~~~~~Gid~~~v~~Vi~ 132 (234)
+..|.+.++. .+.+++|.+.|...++.+.+.|...|+.+...... ..+.. ...+..|.-.|+.+++|.
T Consensus 371 ~~~L~~~~~~--~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~~~~~~g~v~i~~g~L~~GF~~p~~klaVI 444 (483)
T 3hjh_A 371 LDALRKFLET--FDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALI 444 (483)
T ss_dssp THHHHHHHHH--CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCGGGCCTTCEEEEESCCCSCEEETTTTEEEE
T ss_pred HHHHHHHHHh--CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCchhhcCCCcEEEEEcccccCcccCCCCEEEE
Confidence 3555555532 35689999999999999999999998875443211 11111 334455666666555554
No 160
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=25.80 E-value=38 Score=27.50 Aligned_cols=38 Identities=13% Similarity=0.098 Sum_probs=29.2
Q ss_pred CCCcEEEEecc--h-HHHHHHHHHHHHcCC-ceeeeccCCCc
Q psy4494 75 RNQSGIIYTTS--I-KECEDLREELRNRGL-RVSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t--~-~~~~~l~~~L~~~~~-~~~~~h~~~~~ 112 (234)
+..++||||.+ - ..+..++..|+..|+ ++..+.|++..
T Consensus 91 ~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~ 132 (296)
T 1rhs_A 91 NDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRN 132 (296)
T ss_dssp TTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHH
T ss_pred CCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCHHH
Confidence 35678999987 3 347788889999998 48888888753
No 161
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A
Probab=25.21 E-value=56 Score=26.88 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=45.0
Q ss_pred EEEEecchHHHHHHHHHHHHcCCce--eeeccCCCchhhhhcccCCC--CCCccEEEEe--ecCCCHhHhhhhhccc
Q psy4494 79 GIIYTTSIKECEDLREELRNRGLRV--SAYHAKLESNVSIAFGLGID--KPNVRFVIHH--CLSKSMENFYQESGRA 149 (234)
Q Consensus 79 ~iIf~~t~~~~~~l~~~L~~~~~~~--~~~h~~~~~~~T~~~~~Gid--~~~v~~Vi~~--~~P~~~~~y~qr~GR~ 149 (234)
..||.||...+++++..+++.|+.. ..|.-+.-........+|+- ...+.+|.-+ +.|.++.++.+.+.+.
T Consensus 121 ~~v~~n~~~~~~~~~~~~~e~Gv~pE~e~fd~g~l~~~~~l~~~Gll~~p~~~~~vlGv~~g~~~~~~~L~~~~~~~ 197 (284)
T 3chv_A 121 SRVYENPPDLVDWLAAQMRSYRVTPEIEAFDLSHILRAIDMHGRGLLYGKLYVQFVMGVKNAMPADREVFDFYVRMM 197 (284)
T ss_dssp SSEECCCHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHTTCSCSSCEEEEEECCTTSCCCCHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHcCCEEEEEEECHHHHHHHHHHHHcCCCCCCceEEEEEecCCCCCCCHHHHHHHHHhc
Confidence 4689999999999999999998763 33332221111333445553 2344555433 7788888887777554
No 162
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=25.20 E-value=2.4e+02 Score=23.20 Aligned_cols=38 Identities=5% Similarity=0.127 Sum_probs=30.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHc----CCceeeeccCCCc
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNR----GLRVSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~----~~~~~~~h~~~~~ 112 (234)
...++||.++|+.-+..+++.++.. +..+...+|+.+.
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNV 148 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTH
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcch
Confidence 4567999999999999999988764 5667777776654
No 163
>1nbw_B Glycerol dehydratase reactivase beta subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.51.3.2
Probab=24.99 E-value=1.7e+02 Score=20.49 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=35.1
Q ss_pred cEEEEecc----hHHHHHHHHHHHHcCCceeeeccCC--Cchh-------hhhcccCCCCCCc-cEEEEe-ecCCC
Q psy4494 78 SGIIYTTS----IKECEDLREELRNRGLRVSAYHAKL--ESNV-------SIAFGLGIDKPNV-RFVIHH-CLSKS 138 (234)
Q Consensus 78 ~~iIf~~t----~~~~~~l~~~L~~~~~~~~~~h~~~--~~~~-------T~~~~~Gid~~~v-~~Vi~~-~~P~~ 138 (234)
...||+.+ .....++..-+.+.|++.......- +... .+.++.||-+..= ..|||| ++|..
T Consensus 7 aI~i~~~~~~~~~~~l~~vl~GIEEEGip~~v~~~~~~~d~~~lA~~AA~~S~lgVGIGi~~~G~~vih~~~L~~~ 82 (117)
T 1nbw_B 7 GVRLFYDPRGHHAGAINELCWGLEEQGVPCQTITYDGGGDAAALGALAARSSPLRVGIGLSASGEIALTHAQLPAD 82 (117)
T ss_dssp CEEEEECTTSCCHHHHHHHHHHHHHTTCCEEEEECTTCCCHHHHHHHHHHHCTTSEEEEECTTSEEEEEETTSCTT
T ss_pred EEEEEeCCCCCCHHHHHHHHhhhhhcCCCeEEEEeCCCCCHHHHHHHHHHhCCCceEEEECCCCCEEEEcCCCCCC
Confidence 46777732 2456777777788898876644332 2111 4444555555544 678887 44543
No 164
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=24.85 E-value=1.8e+02 Score=22.64 Aligned_cols=59 Identities=12% Similarity=0.192 Sum_probs=41.1
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh--hhhccc-CCCCCCccEEEEe
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--SIAFGL-GIDKPNVRFVIHH 133 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~--T~~~~~-Gid~~~v~~Vi~~ 133 (234)
.+.++++...+.+..+.+.+.+...+.++..+..+++..+ ..++.. --....++.+||.
T Consensus 34 ~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~n 95 (264)
T 3ucx_A 34 QGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGRVDVVINN 95 (264)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCcEEEEC
Confidence 3567888888888999999999888888888889988766 111110 0012357778875
No 165
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=24.63 E-value=55 Score=27.80 Aligned_cols=38 Identities=11% Similarity=0.004 Sum_probs=28.6
Q ss_pred CCCcEEEEe-cch-HHHHHHHHHHHHcCCceeeeccCCCc
Q psy4494 75 RNQSGIIYT-TSI-KECEDLREELRNRGLRVSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~-~t~-~~~~~l~~~L~~~~~~~~~~h~~~~~ 112 (234)
+..+++||| .+- ..+..++..|+..|+++..+.|++..
T Consensus 94 ~d~~VVvYc~~~G~rsa~ra~~~L~~~G~~V~~L~GG~~a 133 (373)
T 1okg_A 94 GELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQA 133 (373)
T ss_dssp SSSCEEEECSSTTTTTHHHHHHHHHHHTCCEEEETTTTHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCCHHH
Confidence 457799999 433 33447888899999988889998854
No 166
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=24.49 E-value=1.3e+02 Score=20.80 Aligned_cols=35 Identities=11% Similarity=0.206 Sum_probs=26.2
Q ss_pred HHHHHHHHhhcCCCcEEEEecc------hHHHHHHHHHHHHcCCc
Q psy4494 64 DELADLMSRRFRNQSGIIYTTS------IKECEDLREELRNRGLR 102 (234)
Q Consensus 64 ~~l~~~l~~~~~~~~~iIf~~t------~~~~~~l~~~L~~~~~~ 102 (234)
..+.+++. ..+++||..+ .--|..+.+.|.+.|+.
T Consensus 7 ~~v~~~i~----~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~ 47 (121)
T 3gx8_A 7 KAIEDAIE----SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVD 47 (121)
T ss_dssp HHHHHHHH----SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBC
T ss_pred HHHHHHhc----cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCC
Confidence 34444443 5679999884 88999999999988754
No 167
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=23.65 E-value=61 Score=28.94 Aligned_cols=38 Identities=8% Similarity=-0.113 Sum_probs=31.8
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCC-ceeeeccCCCc
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~h~~~~~ 112 (234)
+.+++++||.+-..+...+..|+..|+ ++..|.|++..
T Consensus 429 ~~~~ivv~C~sG~rs~~aa~~L~~~G~~~v~~l~GG~~~ 467 (539)
T 1yt8_A 429 TAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSA 467 (539)
T ss_dssp CCSEEEEECSSSHHHHHHHHHHHHHHCSCEEEETTHHHH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEeCCcHHH
Confidence 466899999998889999999999887 57888888753
No 168
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}
Probab=23.38 E-value=12 Score=20.35 Aligned_cols=22 Identities=32% Similarity=0.687 Sum_probs=18.0
Q ss_pred CcccHHHHHHhHcCCCCCCCcc
Q psy4494 194 QTRCRRAIIASYFDEAWSDTEC 215 (234)
Q Consensus 194 ~~~Crr~~l~~~f~e~~~~~~c 215 (234)
...|||+.|..|=|++.....|
T Consensus 4 r~eCRrqC~Rr~edePWr~QEC 25 (37)
T 2l2r_A 4 RGSCRSQCMRRHEDEPWRVQEC 25 (37)
T ss_dssp SCCHHHHHHHHTSSCGGGHHHH
T ss_pred ccHHHHHHHHhccCCccHHHHH
Confidence 3579999999999988776556
No 169
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=23.32 E-value=1.1e+02 Score=23.84 Aligned_cols=59 Identities=10% Similarity=0.041 Sum_probs=40.6
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh--hhhcccCCCCCCccEEEEe
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV--SIAFGLGIDKPNVRFVIHH 133 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~--T~~~~~Gid~~~v~~Vi~~ 133 (234)
.+.++++...+.+..+.+.+.+...+.++..+..+++..+ ..++..-.+...++.+||.
T Consensus 30 ~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~id~lv~n 90 (252)
T 3h7a_A 30 EGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPLEVTIFN 90 (252)
T ss_dssp TTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCceEEEEC
Confidence 3567888888888899999999888888888999988766 1111110000357777774
No 170
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=22.90 E-value=1.6e+02 Score=19.27 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhcCCCcEEEEe------cchHHHHHHHHHHHHcCCce
Q psy4494 63 LDELADLMSRRFRNQSGIIYT------TSIKECEDLREELRNRGLRV 103 (234)
Q Consensus 63 ~~~l~~~l~~~~~~~~~iIf~------~t~~~~~~l~~~L~~~~~~~ 103 (234)
...+.+++. ..+++||. +..-.|..+...|.+.++..
T Consensus 7 ~~~~~~~i~----~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~ 49 (105)
T 2yan_A 7 EERLKVLTN----KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEY 49 (105)
T ss_dssp HHHHHHHHT----SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhc----cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCe
Confidence 344444443 34688887 56788999999998877553
No 171
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=22.71 E-value=1.5e+02 Score=29.23 Aligned_cols=38 Identities=5% Similarity=0.243 Sum_probs=34.1
Q ss_pred CCCcEEEEecchHHHHHHHHHHHH---cCCceeeeccCCCc
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRN---RGLRVSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~---~~~~~~~~h~~~~~ 112 (234)
.+.++||-++|+.-+.++++.++. .++++..+||+.+.
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~ 160 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKK 160 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCT
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCH
Confidence 567899999999999999999998 47789999999986
No 172
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Probab=22.65 E-value=46 Score=24.13 Aligned_cols=36 Identities=8% Similarity=0.090 Sum_probs=25.1
Q ss_pred CCcE--EEEec-chHHHHHHHHHHHHc----------CC-ceeeeccCCC
Q psy4494 76 NQSG--IIYTT-SIKECEDLREELRNR----------GL-RVSAYHAKLE 111 (234)
Q Consensus 76 ~~~~--iIf~~-t~~~~~~l~~~L~~~----------~~-~~~~~h~~~~ 111 (234)
.++. |+||. +-..+...+..|+.. |+ ++..+.||+.
T Consensus 87 ~~~ivvv~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~ 136 (161)
T 1c25_A 87 GKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYK 136 (161)
T ss_dssp TSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHH
T ss_pred CCCeEEEEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHH
Confidence 3454 46798 766777888888753 76 5777788775
No 173
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=22.00 E-value=1.8e+02 Score=22.33 Aligned_cols=40 Identities=5% Similarity=0.094 Sum_probs=33.2
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV 114 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 114 (234)
.+.++++...+.+..+.+.+.+...+.++..+..+++..+
T Consensus 32 ~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 71 (253)
T 3qiv_A 32 EGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPE 71 (253)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHH
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHH
Confidence 3567888888989999999999888888888888888765
No 174
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=21.72 E-value=25 Score=16.32 Aligned_cols=8 Identities=38% Similarity=0.484 Sum_probs=6.2
Q ss_pred EEEEecch
Q psy4494 79 GIIYTTSI 86 (234)
Q Consensus 79 ~iIf~~t~ 86 (234)
-|||||.+
T Consensus 7 piiycnrr 14 (21)
T 8tfv_A 7 PIIYCNRR 14 (26)
T ss_dssp CCEEEEGG
T ss_pred cEEEEcCc
Confidence 48999875
No 175
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=21.18 E-value=2e+02 Score=19.44 Aligned_cols=70 Identities=17% Similarity=0.159 Sum_probs=47.6
Q ss_pred ceEEEEEEcCCChHHHHHHHHHHHHhhcCCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchhhhhc
Q psy4494 47 ENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAF 118 (234)
Q Consensus 47 ~~~y~v~~~~~~~~~~~~~l~~~l~~~~~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~T~~~ 118 (234)
|+-|+|.--.. .++.-.++.++..+ -+-.+.+|..|.+.-..++.+.+...|+.+..+--+.+..+...+
T Consensus 24 nqgyqvrdvnd-sdelkkemkklaee-knfekiliisndkqllkemlelisklgykvflllqdqdeneleef 93 (134)
T 2lci_A 24 NQGYQVRDVND-SDELKKEMKKLAEE-KNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQDENELEEF 93 (134)
T ss_dssp TTTCEEEEECS-HHHHHHHHHHHHHC-CSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHH
T ss_pred ccCeeeeecCc-hHHHHHHHHHHHhh-cCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhHHHHH
Confidence 45677754322 23344455555543 356789999999999999999998999998887777666553333
No 176
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=21.04 E-value=2.3e+02 Score=22.50 Aligned_cols=40 Identities=8% Similarity=0.099 Sum_probs=32.3
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCCceeeeccCCCchh
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNV 114 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 114 (234)
.+.++++--.+.+..+++++.|.+.+.++..+..+++.++
T Consensus 32 ~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~ 71 (255)
T 4g81_D 32 AGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDEL 71 (255)
T ss_dssp TTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHH
Confidence 3556666666778888999999999989999999998876
No 177
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=20.56 E-value=21 Score=31.33 Aligned_cols=37 Identities=11% Similarity=0.033 Sum_probs=0.0
Q ss_pred CCCcEEEEecchHHHHHHHHHHHHcCC-ceeeeccCCC
Q psy4494 75 RNQSGIIYTTSIKECEDLREELRNRGL-RVSAYHAKLE 111 (234)
Q Consensus 75 ~~~~~iIf~~t~~~~~~l~~~L~~~~~-~~~~~h~~~~ 111 (234)
+.+++++||.+-..+...+..|+..|+ ++..|-|++.
T Consensus 424 ~~~~iv~~C~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 461 (466)
T 3r2u_A 424 KNDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEGYK 461 (466)
T ss_dssp --------------------------------------
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCEEEecChHH
Confidence 356799999998888899999999998 6778888775
No 178
>1bi6_H Bromelain inhibitor VI; cysteine protease inhibitor; NMR {Ananas comosus} SCOP: g.3.12.1 g.3.12.1 PDB: 2bi6_H
Probab=20.25 E-value=14 Score=20.05 Aligned_cols=21 Identities=24% Similarity=0.713 Sum_probs=16.1
Q ss_pred CccCCCCCCCCCCCCCccccc
Q psy4494 213 TECRGMCDHCRGGRRDAKRVD 233 (234)
Q Consensus 213 ~~c~~~Cd~C~~~~~~~~~~~ 233 (234)
+.|++-|-.|...-++--++|
T Consensus 12 sdcpgfcktckaefgkyicld 32 (41)
T 1bi6_H 12 SDCPGFCKTCKAEFGKYICLD 32 (41)
T ss_dssp SSCCTTCSSEEEETTEEEECE
T ss_pred cCCchHHHHHHHHhCceEEEE
Confidence 458899999998876666655
No 179
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=20.11 E-value=1e+02 Score=25.11 Aligned_cols=38 Identities=21% Similarity=0.161 Sum_probs=28.7
Q ss_pred CCCcEEEEecch---HHHHHHHHHHHHcCCc-eeeeccCCCc
Q psy4494 75 RNQSGIIYTTSI---KECEDLREELRNRGLR-VSAYHAKLES 112 (234)
Q Consensus 75 ~~~~~iIf~~t~---~~~~~l~~~L~~~~~~-~~~~h~~~~~ 112 (234)
+..+++|||.+- ..+.+++..|+..|++ +..+.|++..
T Consensus 106 ~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~~~ 147 (302)
T 3olh_A 106 AATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRH 147 (302)
T ss_dssp SSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHHHH
T ss_pred CCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCHHH
Confidence 456789999642 2478888999999985 7788887653
Done!