RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4494
(234 letters)
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch
repair, nucleotide-binding, DNA-binding, polymorphism,
nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens}
PDB: 2wwy_A*
Length = 591
Score = 266 bits (682), Expect = 2e-86
Identities = 90/204 (44%), Positives = 128/204 (62%), Gaps = 19/204 (9%)
Query: 49 FYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA 108
+Y+VR KP+ +D ++++ L++ R++ QSGIIY S K+ E + L+N G+ AYHA
Sbjct: 240 YYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHA 299
Query: 109 KLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAG 150
LE ++AFG+GIDKP+VRFVIHH +SKSMEN+YQESGRAG
Sbjct: 300 NLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAG 359
Query: 151 RDGQIAHCILYYRLPDVFKLSSMVFDQQTGLANLYNIVSYCLDQTRCRRAIIASYFDEAW 210
RD A CILYY D+F++SSMV + G LY +VSYC + ++CRR ++A +FDE W
Sbjct: 360 RDDMKADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYCQNISKCRRVLMAQHFDEVW 419
Query: 211 SDTECRGMCDHCRGGRRDAKRVDV 234
+ C MCD+C +R ++
Sbjct: 420 NSEACNKMCDNCCKD-SAFERKNI 442
Score = 76.6 bits (189), Expect = 2e-16
Identities = 23/29 (79%), Positives = 28/29 (96%)
Query: 23 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
+AFG+GIDKP+VRFVIHH +SKSMEN+YQ
Sbjct: 325 VAFGMGIDKPDVRFVIHHSMSKSMENYYQ 353
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix,
helix-turn-helix, ATP binding, Zn(2+) binding,
hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43
c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Length = 523
Score = 174 bits (444), Expect = 6e-52
Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 35/210 (16%)
Query: 49 FYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA 108
Y + K LD+L + + R +SGIIY S + ED L+++G+ +AYHA
Sbjct: 214 RYMLMEK----FKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHA 268
Query: 109 KLESNV------------------SIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAG 150
LE+NV ++AFG+GI+KPNVRFV+H + +++E++YQE+GRAG
Sbjct: 269 GLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAG 328
Query: 151 RDGQIAHCILYYRLPDVFKLSSMVFD------QQTGLANLYNIVSYCLDQTRCRRAIIAS 204
RDG A +L+Y D+ L + + Q L + ++ + CRR ++ +
Sbjct: 329 RDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFA-EAQTCRRLVLLN 387
Query: 205 YFDEAWSDTECRGMCDHCRGGRRDAKRVDV 234
YF E C G CD C K+ D
Sbjct: 388 YFGEG-RQEPC-GNCDICLDPP---KQYDG 412
Score = 67.2 bits (165), Expect = 4e-13
Identities = 16/29 (55%), Positives = 26/29 (89%)
Query: 23 IAFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
+AFG+GI+KPNVRFV+H + +++E++YQ
Sbjct: 294 VAFGMGINKPNVRFVVHFDIPRNIESYYQ 322
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein,
translation; 1.75A {Saccharomyces cerevisiae} SCOP:
c.37.1.19
Length = 165
Score = 44.1 bits (105), Expect = 7e-06
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 22/123 (17%)
Query: 49 FYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA 108
FY V ++ K + L DL Q+ +I+ + ++ E+L +LRN VSA ++
Sbjct: 7 FY-VNVEEEEYK--YECLTDLYDSISVTQA-VIFCNTRRKVEELTTKLRNDKFTVSAIYS 62
Query: 109 KLE---------------SNVSIA---FGLGIDKPNVRFVIHHCLSKSMENFYQESGRAG 150
L S + I+ GID V VI++ L + EN+ GR G
Sbjct: 63 DLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGG 122
Query: 151 RDG 153
R G
Sbjct: 123 RFG 125
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase;
RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo
sapiens} SCOP: c.37.1.19
Length = 172
Score = 43.0 bits (102), Expect = 2e-05
Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 19/109 (17%)
Query: 63 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE----------- 111
+L DL+ NQ +I+ S++ C L + L + A H +
Sbjct: 19 NRKLFDLLDVLEFNQV-VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQF 77
Query: 112 ----SNVSIA---FGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDG 153
+ +A FG G+D V ++ + + + + RAGR G
Sbjct: 78 KDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG 126
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding,
RNA binding protein; 2.10A {Saccharomyces cerevisiae}
SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Length = 400
Score = 40.6 bits (96), Expect = 2e-04
Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 24/113 (21%)
Query: 63 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL------------ 110
L L L S+ NQ+ II+ S E L +++ + G HA++
Sbjct: 246 LHCLNTLFSKLQINQA-IIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEF 304
Query: 111 ---ESNVSIA---FGLGIDKPNVRFVIHHCLSKSMENFY----QESGRAGRDG 153
+ + GID V VI+ K+ E Y SGR G G
Sbjct: 305 RQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAET-YLHRIGRSGRFGHLG 356
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 2e-04
Identities = 27/208 (12%), Positives = 56/208 (26%), Gaps = 61/208 (29%)
Query: 42 LSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGI-IYTTSI-------KECEDLR 93
L+ +E+ V ++PA + D L+ F + I S+ + +
Sbjct: 355 LTTIIESSLNV-LEPAEYRKMFDRLS-----VFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 94 EELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHC---LSKSMENFYQESGRAG 150
+L L + I L +EN Y
Sbjct: 409 NKLHKYSL------------------VEKQPKESTISIPSIYLELKVKLENEYA------ 444
Query: 151 RDGQIAH--CILYYRLPDVFKLSSMVFDQQTGLANLYNIVSYCLDQTR------CRRAII 202
H + +Y +P F ++ Y+ + + L R +
Sbjct: 445 -----LHRSIVDHYNIPKTFDSDDLIPPYLDQY--FYSHIGHHLKNIEHPERMTLFRMV- 496
Query: 203 ASYFDEAWSDTECR--GMCDHCRGGRRD 228
+ D + + + R + G +
Sbjct: 497 --FLDFRFLEQKIRHDSTAWNASGSILN 522
Score = 35.2 bits (80), Expect = 0.016
Identities = 27/195 (13%), Positives = 52/195 (26%), Gaps = 44/195 (22%)
Query: 38 IHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELR 97
+ + F + KD D ++S+ +E + + +
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK--------------EEIDHIIMS-K 58
Query: 98 NRGLRVSAYHAKLES---NVSIAFGLGIDKPNVRFV---IH-HCLSKSM--ENFYQESGR 148
+ L S + F + + N +F+ I SM + ++ R
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 149 AGRDGQIAHCILYYRLPDVFKLSSMVFDQQTGLANL---YNIVSY--------CLDQTRC 197
D Q+ RL KL + L L N++ + C
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKL-------RQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 198 RRAIIASYFDEA--W 210
+ D W
Sbjct: 172 LSYKVQCKMDFKIFW 186
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis,
cell cycle, nucleus, phosph RNA-binding, ATP-binding,
helicase, hydrolase; 3.50A {Homo sapiens}
Length = 414
Score = 40.2 bits (95), Expect = 3e-04
Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 27/127 (21%)
Query: 49 FYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA 108
FY + ++ K LD L DL Q+ +I+ + ++ + L E++ R VSA H
Sbjct: 257 FY-INVEREEWK--LDTLCDLYETLTITQA-VIFINTRRKVDWLTEKMHARDFTVSAMHG 312
Query: 109 KLE---------------SNVSIA---FGLGIDKPNVRFVIHHCLSKSMENFYQ----ES 146
++ S V I GID V VI++ L + EN Y
Sbjct: 313 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNREN-YIHRIGRG 371
Query: 147 GRAGRDG 153
GR GR G
Sbjct: 372 GRFGRKG 378
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation,
rRNA processing, mRNA splicing, mRNA transport; HET:
ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB:
2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B
2zu6_A
Length = 410
Score = 39.9 bits (94), Expect = 3e-04
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 27/127 (21%)
Query: 49 FYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA 108
F+ V ++ K D L DL Q+ +I+ + ++ + L E++R VS+ H
Sbjct: 253 FF-VAVEREEWK--FDTLCDLYDTLTITQA-VIFCNTKRKVDWLTEKMREANFTVSSMHG 308
Query: 109 KLE---------------SNVSIA---FGLGIDKPNVRFVIHHCLSKSMENFYQ----ES 146
+ S V I+ + G+D P V +I++ L + E Y S
Sbjct: 309 DMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL-YIHRIGRS 367
Query: 147 GRAGRDG 153
GR GR G
Sbjct: 368 GRYGRKG 374
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene
regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19
c.37.1.19 PDB: 1xtj_A* 1xtk_A
Length = 391
Score = 39.9 bits (94), Expect = 4e-04
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 19/109 (17%)
Query: 63 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL------------ 110
+L DL+ NQ +I+ S++ C L + L + A H +
Sbjct: 238 NRKLFDLLDVLEFNQV-VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQF 296
Query: 111 ---ESNVSIA---FGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDG 153
+ + +A FG G+D V ++ + + + + RAGR G
Sbjct: 297 KDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG 345
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein,
translation; 2.50A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 2vso_A* 2vsx_A*
Length = 394
Score = 39.4 bits (93), Expect = 6e-04
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 27/127 (21%)
Query: 49 FYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA 108
FY V ++ K + L DL Q+ +I+ + ++ E+L +LRN VSA ++
Sbjct: 236 FY-VNVEEEEYK--YECLTDLYDSISVTQA-VIFCNTRRKVEELTTKLRNDKFTVSAIYS 291
Query: 109 KLE---------------SNVSIA---FGLGIDKPNVRFVIHHCLSKSMENFYQ----ES 146
L S + I+ GID V VI++ L + EN Y
Sbjct: 292 DLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKEN-YIHRIGRG 350
Query: 147 GRAGRDG 153
GR GR G
Sbjct: 351 GRFGRKG 357
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling,
archaea, isomeras; 2.35A {Thermotoga maritima} PDB:
3p4y_A 3p4x_A*
Length = 414
Score = 38.6 bits (90), Expect = 0.001
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 29/130 (22%)
Query: 47 ENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAY 106
N VRI + K+ L EL ++ +I+ + +E ++L E L+ V
Sbjct: 229 RNITHVRI-SSRSKEKLVELLEIF-----RDGILIFAQTEEEGKELYEYLKRFKFNVGET 282
Query: 107 HAKLESNV--------------SIAFGL---GIDKPN-VRFVI-----HHCLSKSMENFY 143
++ E N +G G+D P +++VI +
Sbjct: 283 WSEFEKNFEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQAS 342
Query: 144 QESGRAGRDG 153
S R
Sbjct: 343 GRSSRILNGV 352
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural
genomics, structural consortium, SGC, alternative
initiation, ATP-binding, devel protein; 2.80A {Homo
sapiens}
Length = 175
Score = 36.4 bits (85), Expect = 0.003
Identities = 26/129 (20%), Positives = 41/129 (31%), Gaps = 28/129 (21%)
Query: 49 FYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA 108
+Y V + K L ++ Q+ II+ + + + L E+ G +VS
Sbjct: 11 YY-VLCEHRKDK--YQALCNIYGSITIGQA-IIFCQTRRNAKWLTVEMIQDGHQVSLLSG 66
Query: 109 KLE---------------SNVSIAFGL---GIDKPNVRFVI------HHCLSKSMENFYQ 144
+L V I + GID V V+ E +
Sbjct: 67 ELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLH 126
Query: 145 ESGRAGRDG 153
GR GR G
Sbjct: 127 RIGRTGRFG 135
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics,
structural genomic consortium, SGC, hydrolase; 2.60A
{Homo sapiens}
Length = 191
Score = 35.7 bits (83), Expect = 0.005
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 18/92 (19%)
Query: 80 IIYTTSIKECEDLREELRNRGLRVSAYHAKLE---------------SNVSIAFGL---G 121
+I+ + + + E L +G+ A H + +V +A + G
Sbjct: 58 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 117
Query: 122 IDKPNVRFVIHHCLSKSMENFYQESGRAGRDG 153
+D P ++ VI++ + + +EN+ GR G G
Sbjct: 118 LDFPAIQHVINYDMPEEIENYVHRIGRTGCSG 149
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation,
nucleotide-binding, hydrolase, RNA-binding, ATP-binding,
DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Length = 185
Score = 35.6 bits (83), Expect = 0.005
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 18/109 (16%)
Query: 64 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE------------ 111
L DL++ ++ +++ + K + L + L + G ++ H
Sbjct: 34 SFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 93
Query: 112 ---SNVSIAFGL---GIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQ 154
S + +A + G+D NV+ VI+ L +E + GR GR G
Sbjct: 94 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGN 142
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.041
Identities = 21/173 (12%), Positives = 46/173 (26%), Gaps = 72/173 (41%)
Query: 61 DCLDELADLMSRRFRNQSGIIYTTSIKE-CEDLREELRNRGLRVSAYHAKLESNVSIAFG 119
D +EL DL ++ Y + + + E L + + F
Sbjct: 168 DYFEELRDL----YQ-----TYHVLVGDLIKFSAETLSEL--------IRTTLDAEKVFT 210
Query: 120 LGID----------KPNVRFVIH-------HCLSKSMENFYQESGRAGRDGQIAHCILYY 162
G++ P+ +++ + Q+AH Y
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI-----------------QLAH---YV 250
Query: 163 RLPDVFKLSSMVFDQQTGL--ANLYNIVSYCLDQTRCRRAIIASYFDEAWSDT 213
V + G L + + T + ++ + A +D+
Sbjct: 251 -----------VTAKLLGFTPGELRSYLKGA---TGHSQGLVTAVA-IAETDS 288
Score = 29.6 bits (66), Expect = 1.2
Identities = 38/226 (16%), Positives = 70/226 (30%), Gaps = 71/226 (31%)
Query: 12 NLW------RTSFYQVSIAFGLGIDKPN-VRFVIHHCLSKSM---ENF----YQVRIKPA 57
++W Y SI L I N V IH K EN+ ++ +
Sbjct: 1644 DVWNRADNHFKDTYGFSI---LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK 1700
Query: 58 AQKDCLDELADLMSRR--FRNQSGI----------IYTTSIKECEDLREELRNRGLRV-- 103
+ + + + + S FR++ G+ + EDL+ + GL
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK----GLIPAD 1756
Query: 104 -----------SAYHAK-----LESNVSIAF--GLGIDKPNVRFVIHHCLSKSMENFYQE 145
+A + +ES V + F G+ + + +
Sbjct: 1757 ATFAGHSLGEYAALASLADVMSIESLVEVVFYRGM---------TMQVAVPRDELGRSNY 1807
Query: 146 SGRAGRDGQIAHCILYYRLPDVFKLSSMVFDQQTG----LANLYNI 187
A G++A L V + ++TG + N YN+
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVG----KRTGWLVEIVN-YNV 1848
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 33.3 bits (77), Expect = 0.061
Identities = 26/134 (19%), Positives = 41/134 (30%), Gaps = 35/134 (26%)
Query: 49 FYQVRIKPAAQK-DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYH 107
Y + + K + L EL L++ II+ E++ + G V+
Sbjct: 334 LY-MDCQSEEHKYNVLVELYGLLTI----GQSIIFCKKKDTAEEIARRMTADGHTVACLT 388
Query: 108 AKLE---------------SNVSIAFGL---GIDKPNVRFVI------HHCLSKSMENFY 143
LE S V + + GID V V+ + Y
Sbjct: 389 GNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQT-Y 447
Query: 144 ----QESGRAGRDG 153
+GR GR G
Sbjct: 448 LHRIGRTGRFGRVG 461
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 32.8 bits (75), Expect = 0.089
Identities = 26/95 (27%), Positives = 34/95 (35%), Gaps = 28/95 (29%)
Query: 36 FVIHHCLSKSMENFYQVRIKPAAQ--KDCLDELADLMSRRFRN----------QSGIIYT 83
F I S E+ V + P +DCL EL D RR+R + II
Sbjct: 93 FKI----VGSKEDGGFVPVSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIED 148
Query: 84 -------TSIKE---CEDLREELRNRGLRVSAYHA 108
TS+K CE E + R +HA
Sbjct: 149 IPYDRAKTSMKVFPMCEKCSREYHDPHDR--RFHA 181
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 3.19A {Homo
sapiens}
Length = 479
Score = 32.7 bits (75), Expect = 0.089
Identities = 26/134 (19%), Positives = 42/134 (31%), Gaps = 35/134 (26%)
Query: 49 FYQVRIKPAAQK-DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYH 107
+Y V +K L L ++ Q+ +I+ + K L EL G +V+
Sbjct: 310 YY-VLCSSRDEKFQALCNLYGAITI---AQA-MIFCHTRKTASWLAAELSKEGHQVALLS 364
Query: 108 AKLE---------------SNVSIA---FGLGIDKPNVRFVI------HHCLSKSMENFY 143
++ V + GID V VI + E Y
Sbjct: 365 GEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNET-Y 423
Query: 144 Q----ESGRAGRDG 153
+GR G+ G
Sbjct: 424 LHRIGRTGRFGKRG 437
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 32.5 bits (73), Expect = 0.13
Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 29/140 (20%)
Query: 44 KSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQS---GIIYTTSIKECEDLREELRNRG 100
K + + +D+L +++ + + + I++T + + + EL G
Sbjct: 326 KKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDG 385
Query: 101 LRVSAYHAKL-----------------------ESNVSIA---FGLGIDKPNVRFVIHHC 134
++ + + E NV +A G+D P V V+ +
Sbjct: 386 IKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYE 445
Query: 135 LSKSMENFYQESGRAGRDGQ 154
S Q GR GR
Sbjct: 446 PVPSAIRSIQRRGRTGRHMP 465
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA
dependent ATPase, mRNA export, nucleocytoplasmic
transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens}
PDB: 3ews_A* 3g0h_A* 3fhc_B
Length = 412
Score = 32.1 bits (74), Expect = 0.14
Identities = 26/134 (19%), Positives = 43/134 (32%), Gaps = 35/134 (26%)
Query: 49 FYQVRIKPAAQK-DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYH 107
+Y V +K L L ++ Q+ +I+ + K L EL G +V+
Sbjct: 243 YY-VLCSSRDEKFQALCNLYGAITI---AQA-MIFCHTRKTASWLAAELSKEGHQVALLS 297
Query: 108 AKLE---------------SNVSIAFGL---GIDKPNVRFVI------HHCLSKSMENFY 143
++ V + + GID V VI + E Y
Sbjct: 298 GEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNET-Y 356
Query: 144 Q----ESGRAGRDG 153
+GR G+ G
Sbjct: 357 LHRIGRTGRFGKRG 370
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural GE consortium, hydrolase; HET: AMP; 2.20A
{Homo sapiens}
Length = 417
Score = 31.7 bits (73), Expect = 0.19
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 18/109 (16%)
Query: 64 DELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYH---------AKLE--- 111
L DL++ ++ +++ + K + L + L + G ++ H L
Sbjct: 264 SFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 323
Query: 112 ---SNVSIAFGL---GIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQ 154
S + +A + G+D NV+ VI+ L +E + GR GR G
Sbjct: 324 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGN 372
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer,
ATP-binding, helicase, hydrolase, nucleotide-binding;
2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Length = 212
Score = 31.1 bits (71), Expect = 0.21
Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 24/115 (20%)
Query: 77 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL-------------ESNVSIAFGL--- 120
+++T + E E++ + L G A H L + V + L
Sbjct: 32 DRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV---LVAT 88
Query: 121 -----GIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKL 170
G+D P V V+H+ L E + SGR GR G+ +L Y + +
Sbjct: 89 DVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDV 143
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA
recognition motif, ATP-BIND helicase,
nucleotide-binding; 2.80A {Thermus thermophilus}
Length = 300
Score = 30.1 bits (68), Expect = 0.55
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 24/105 (22%)
Query: 79 GIIYTTSIKECEDLREELRNRGLRVSAYHAKL-------------ESNVSIAFGL----- 120
+++T + E E++ + L G A H + + V + L
Sbjct: 31 AMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV---LVATDV 87
Query: 121 ---GIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYY 162
G+D P V V+H+ + E + SGR GR G+ +L Y
Sbjct: 88 AARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLY 132
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding,
structural genomics, northeast structural genomics
consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Length = 75
Score = 28.2 bits (62), Expect = 0.57
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 91 DLREELRNRGLRVSAYHAKL 110
+L++EL+ R L VS +L
Sbjct: 33 ELKQELKLRSLPVSGTKTEL 52
>2dbg_A MNDA, myeloid cell nuclear differentiation antigen; interferon
induction, DNA-binding, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 103
Score = 28.1 bits (62), Expect = 0.91
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 15/67 (22%)
Query: 42 LSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSG----IIYTTSIKECEDLREELR 97
L+ M+ Y RIK + DLM ++F+ + I + ++L LR
Sbjct: 42 LTTKMQEEYN-RIK----------ITDLMEKKFQGVACLDKLIELAKDMPSLKNLVNNLR 90
Query: 98 NRGLRVS 104
+V+
Sbjct: 91 KEKSKVA 97
>2yu0_A Interferon-activable protein 205; PAAD_dapin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 94
Score = 27.3 bits (60), Expect = 1.7
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 15/61 (24%)
Query: 42 LSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSG----IIYTTSIKECEDLREELR 97
L + + Y I+ +A++M +F SG I + + E L+
Sbjct: 35 LERDNQEQYT-TIQ----------IANMMEEKFPADSGLGKLIEFCEEVPALRKRAEILK 83
Query: 98 N 98
Sbjct: 84 K 84
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox
protein, protein folding, redox active centre; 1.81A
{Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Length = 186
Score = 27.8 bits (62), Expect = 2.2
Identities = 16/107 (14%), Positives = 27/107 (25%), Gaps = 12/107 (11%)
Query: 29 IDKPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKE 88
ID V + + ++ R A D + F Q KE
Sbjct: 42 IDNHKVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDENKEWLTKE 101
Query: 89 C------------EDLREELRNRGLRVSAYHAKLESNVSIAFGLGID 123
E + +++ + S E + IA I
Sbjct: 102 LLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDNHIK 148
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex,
ATPase, riken structural genomics/proteomics initiative,
RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Length = 434
Score = 28.3 bits (64), Expect = 2.3
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 18/93 (19%)
Query: 80 IIYTTSIKECEDLREELRNRGLRVSAYH---------AKLE------SNVSIAFGL---G 121
I++ + + + L L + ++ H L V IA + G
Sbjct: 304 IVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRG 363
Query: 122 IDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQ 154
+D N++ VI++ + ++++ GR GR G
Sbjct: 364 LDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGN 396
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide
binding, hydrogenase maturation factor transferase;
HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A*
3ttf_A* 3ttd_A 3tsq_A
Length = 657
Score = 28.2 bits (63), Expect = 2.4
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 43 SKSMENFYQVRIKP--AAQKDCLDELADLMSRRFR 75
S+S +I P A CL E+ RR+R
Sbjct: 2 SQSAGGAMNTQIVPDAATCPACLAEMNTPGERRYR 36
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural
genomics, joint center for structural genomics, JCSG;
HET: CIT; 1.85A {Parabacteroides distasonis}
Length = 262
Score = 27.9 bits (62), Expect = 2.5
Identities = 7/70 (10%), Positives = 22/70 (31%), Gaps = 13/70 (18%)
Query: 50 YQVRIKPAAQKDCLDELADL-----------MSRRFRNQSGIIYTTSIKECEDLREELRN 98
Y + P + LD+ +L + + ++++E +
Sbjct: 17 YSFHLFPLTE--ALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAAS 74
Query: 99 RGLRVSAYHA 108
+G+++
Sbjct: 75 KGIKIVGTGV 84
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding
protein; HET: PLM; 2.50A {Bacillus subtilis}
Length = 315
Score = 27.6 bits (62), Expect = 3.1
Identities = 10/54 (18%), Positives = 24/54 (44%)
Query: 46 MENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR 99
+ F ++R + A + L + S+ ++ +I+ +E + EEL +
Sbjct: 231 IVPFEKIRTRKKAISRIYELLDEDASKGLPMRAAVIHANREEEAAKIIEELSAK 284
>1mjt_A Nitric-oxide synthase homolog; sanos, NO, NOS, bacterial, MRSA,
seitu, oxidoreductase; HET: SUC HEM NAD; 2.40A
{Staphylococcus aureus} SCOP: d.174.1.1
Length = 347
Score = 27.9 bits (62), Expect = 3.1
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 107 HAKLESNVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRD 152
A +E N ++ K V V H +K E F + + GR
Sbjct: 267 RALVELNYAVYHSF--KKEGVSIVDHLTAAKQFELFERNEAQQGRQ 310
>2flq_A Nitric oxide synthase; thermostable enzyme, oxidoreductase; HET:
ARG HEM; 3.20A {Geobacillus stearothermophilus}
Length = 375
Score = 27.9 bits (62), Expect = 3.1
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 123 DKPNVRFVIHHCLSKSMENFYQESGRAGRD 152
K V V HH ++ + F Q+ AGR
Sbjct: 298 KKAGVSIVDHHTAARQFQLFEQQEKAAGRH 327
>1m7v_A Nitric oxide synthase; pterin oxygenase, bacteria, heme,
oxidoreductase; HET: ARG HEM THG; 1.95A {Bacillus
subtilis} SCOP: d.174.1.1 PDB: 2fbz_X* 2fc1_A* 1m7z_A*
2fc2_A* 2an0_A* 2amo_A* 2an2_A*
Length = 363
Score = 27.9 bits (62), Expect = 3.4
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 123 DKPNVRFVIHHCLSKSMENFYQESGRAGRD 152
K V V HH + + F ++ AGR
Sbjct: 293 KKQGVSIVDHHTAASQFKRFEEQEEEAGRK 322
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding
protein, lipid binding protein; HET: PLM; 2.04A
{Streptococcus mutans}
Length = 320
Score = 27.2 bits (61), Expect = 4.5
Identities = 6/38 (15%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 63 LDELADLMSRRFRNQS-GIIYTTSIKECEDLREELRNR 99
+ E+ + + + + Y + E+L+E+L
Sbjct: 249 MKEMLKRATADVAHDTAVVAYANDSEAAENLKEQLLAN 286
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin,
antifungal peptide, antimicrobial protein; NMR
{Echinochloa crus-galli}
Length = 37
Score = 24.7 bits (53), Expect = 4.6
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 197 CRRAIIASYFDEAWSDTECRGMCDHCRGG 225
CR + + DE W EC C RGG
Sbjct: 7 CRSQCMRRHEDEPWRVQECVSQCRRRRGG 35
>3n5w_A Nitric oxide synthase; heme enzyme, substrate inhibitor, Zn
oxidoreductase, oxidoreductase-oxidoreductase inhibitor
COM; HET: HEM XFJ; 1.73A {Rattus norvegicus} PDB:
2hx3_A* 2hx4_A* 3b3m_A* 3b3n_A* 3b3o_A* 3b3p_A* 3hsn_A*
3hso_A* 3hsp_A* 3jt3_A* 3jt4_A* 3jt5_A* 3jt6_A* 3jt7_A*
3jt8_A* 3jt9_A* 3jta_A* 3n2r_A* 3n5v_A* 1om4_A* ...
Length = 422
Score = 27.2 bits (60), Expect = 5.6
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 123 DKPNVRFVIHHCLSKSMENFYQESGRAGRD 152
V V HH ++S + R
Sbjct: 346 QSDKVTIVDHHSATESFIKHMENEYRCRGG 375
>2ort_A Nitric oxide synthase, inducible; L-arginine monooxygenase, heme,
dimerization, inhibitor, NOS, oxidoreductase; HET: HEM
342; 1.87A {Mus musculus} PDB: 1dd7_A* 2oro_A* 2orq_A*
2orr_A* 2ors_A* 2orp_A* 1nos_A* 1noc_A* 2nos_A* 1df1_A*
1nod_A* 2nod_A* 3nod_A* 3nw2_A* 2bhj_A* 1dwv_A* 1dww_A*
1dwx_A* 1n2n_A* 1qw4_A* ...
Length = 389
Score = 27.2 bits (60), Expect = 5.7
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 107 HAKLESNVSI--AFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRD 152
A E NV++ +F K NV + HH S+S Q RA
Sbjct: 294 RAVTEINVAVLHSF----QKQNVTIMDHHTASESFMKHMQNEYRARGG 337
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 27.0 bits (60), Expect = 5.8
Identities = 5/18 (27%), Positives = 6/18 (33%)
Query: 90 EDLREELRNRGLRVSAYH 107
E L L + VS
Sbjct: 177 ESLHYSLLKYEIGVSVLC 194
>3e7m_A Nitric oxide synthase, inducible; NOS, heme, tetrahydrobiopterin,
oxido calmodulin-binding, FAD, FMN, iron, metal-binding,
NADP, oxidoreductase; HET: HEM H4B AT2; 2.00A {Mus
musculus} SCOP: d.174.1.1 PDB: 2y37_A* 1r35_A* 3e67_A*
3e68_A* 3e6l_A* 3e6n_A* 3e6o_A* 3e6t_A* 3e7i_A* 3e65_A*
3e7t_A* 3eai_A* 3ebd_A* 3ebf_A* 3nqs_A* 1m8d_A* 1m8e_A*
1m8h_A* 1m8i_A* 1m9t_A* ...
Length = 433
Score = 26.8 bits (59), Expect = 6.4
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 107 HAKLESNVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRD 152
A E NV++ K NV + HH S+S Q RA
Sbjct: 342 RAVTEINVAVLHSF--QKQNVTIMDHHTASESFMKHMQNEYRARGG 385
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase,
mRNA-export, nuclear pore, hydrolase-RNA complex; HET:
ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A*
3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A
3pev_A* 3peu_A*
Length = 395
Score = 26.8 bits (60), Expect = 6.9
Identities = 36/134 (26%), Positives = 47/134 (35%), Gaps = 35/134 (26%)
Query: 49 FYQVRIKPAAQK-DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYH 107
Y + K A K D L EL LM+ S II+ + K L +L++ G VS H
Sbjct: 220 LY-MDCKNEADKFDVLTELYGLMTI----GSSIIFVATKKTANVLYGKLKSEGHEVSILH 274
Query: 108 AKLE---------------SNVSIAFGL---GIDKPNVRFVI------HHCLSKSMENFY 143
L+ S V I + GID P V V+ Y
Sbjct: 275 GDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPAT-Y 333
Query: 144 ----QESGRAGRDG 153
+GR GR G
Sbjct: 334 IHRIGRTGRFGRKG 347
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 27.0 bits (60), Expect = 7.0
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 21/91 (23%)
Query: 59 QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESN----- 113
+ + L+ ++ + GIIY + +E E++ E L+N R+ A + +
Sbjct: 260 NDESISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKN-KFRIGIVTATKKGDYEKFV 316
Query: 114 ---VSIAFGL---------GIDKPN-VRFVI 131
+ G G+D P +RF +
Sbjct: 317 EGEIDHLIGTAHYYGTLVRGLDLPERIRFAV 347
>2dt8_A DEGV family protein; fatty acid binding, structural genomics,
NPPSFA, natio project on protein structural and
functional analyses; HET: PLM; 1.48A {Thermus
thermophilus}
Length = 280
Score = 26.8 bits (60), Expect = 7.1
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 46 MENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGL 101
+E + R + A+++ L R R ++ +Y+ LR+E+ GL
Sbjct: 195 VEAAGRARGEKKAREEILKAFRAWAEGRKRIRAYFLYSGDEDAVAALRQEVLASGL 250
>1mg4_A Doublecortin, doublecortin-like kinase (N-terminal domain); DCX
domain, microtubule bundling, cortex development,
transferase; 1.50A {Homo sapiens} SCOP: d.15.11.1 PDB:
1mfw_A 1mjd_A 2bqq_A 2xrp_I*
Length = 113
Score = 25.6 bits (56), Expect = 7.5
Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 19/69 (27%)
Query: 32 PNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGI--IYT----TS 85
+ + I +S E L +L +S G+ IYT
Sbjct: 29 KGIVYAISPDRFRSFEAL-------------LADLTRTLSDNVNLPQGVRTIYTIDGLKK 75
Query: 86 IKECEDLRE 94
I + L E
Sbjct: 76 ISSLDQLVE 84
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase;
1.95A {Bacillus subtilis}
Length = 163
Score = 25.9 bits (58), Expect = 7.6
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 23/99 (23%)
Query: 77 QSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL---------------ESNVSIAFGL- 120
S II+ + + L +EL + G H + E +A +
Sbjct: 36 DSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVA 95
Query: 121 --GIDKPNVRFVIHHCLSKSMENFY----QESGRAGRDG 153
GID N+ VI++ L E+ Y +GRAG G
Sbjct: 96 ARGIDIENISLVINYDLPLEKES-YVHRTGRTGRAGNKG 133
>1mgp_A Hypothetical protein TM841; two domain structure with mixed
alpha/beta structures in BOTH domains, structural
genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP:
c.119.1.1 PDB: 1vpv_A*
Length = 313
Score = 26.5 bits (59), Expect = 8.2
Identities = 7/54 (12%), Positives = 21/54 (38%)
Query: 46 MENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNR 99
+ + +VR A + +++L + + + ++ + +L LR
Sbjct: 225 LIPYRKVRGDKKAIEALIEKLREDTPEGSKLRVIGVHADNEAGVVELLNTLRKS 278
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein,
ATPase, RNA binding protein; 3.00A {Methanocaldococcus
jannaschii} SCOP: c.37.1.19 c.37.1.19
Length = 367
Score = 26.3 bits (59), Expect = 9.3
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 24/100 (24%)
Query: 76 NQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL-------------ESNVSIAFGL-- 120
G+++ + ++ ++L LR+ G + A H L + + I L
Sbjct: 238 EFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRI---LIA 294
Query: 121 ------GIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQ 154
GID ++ VI++ L ++ E++ GR GR G+
Sbjct: 295 TDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGK 334
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics,
PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A
{Ruminococcus gnavus}
Length = 298
Score = 26.0 bits (58), Expect = 9.6
Identities = 8/67 (11%), Positives = 24/67 (35%)
Query: 33 NVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDL 92
N++ ++ ++ + R A D +A + I + + +++
Sbjct: 204 NIKPIMGSTPQGTICQKEKARGMKKALVKMADCVAADVVNAGDKILAIAHCNCEERAKEV 263
Query: 93 REELRNR 99
+ L+ R
Sbjct: 264 QRLLKER 270
>1d0c_A Bovine endothelial nitric oxide synthase heme DOM; alpha-beta fold,
oxidoreductase; HET: HEM INE; 1.65A {Bos taurus} SCOP:
d.174.1.1 PDB: 1d0o_A* 1d1v_A* 1d1w_A* 1d1x_A* 1d1y_A*
1dm6_A* 1dm7_A* 1dm8_A* 1dmi_A* 1dmj_A* 1dmk_A* 1ed4_A*
1ed5_A* 1ed6_A* 1foi_A* 1foj_A* 1fol_A* 1foo_A* 1fop_A*
1nse_A* ...
Length = 444
Score = 26.4 bits (58), Expect = 9.7
Identities = 6/30 (20%), Positives = 8/30 (26%)
Query: 123 DKPNVRFVIHHCLSKSMENFYQESGRAGRD 152
V V HH + S +A
Sbjct: 375 QLAKVTIVDHHAATVSFMKHLDNEQKARGG 404
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.139 0.432
Gapped
Lambda K H
0.267 0.0447 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,719,537
Number of extensions: 212509
Number of successful extensions: 859
Number of sequences better than 10.0: 1
Number of HSP's gapped: 842
Number of HSP's successfully gapped: 65
Length of query: 234
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 143
Effective length of database: 4,160,982
Effective search space: 595020426
Effective search space used: 595020426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.1 bits)