RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4494
(234 letters)
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 62.2 bits (151), Expect = 4e-12
Identities = 20/128 (15%), Positives = 36/128 (28%), Gaps = 34/128 (26%)
Query: 72 RRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE-------------------- 111
+ +I+ S K+C++L +L G+ AY+ L+
Sbjct: 32 EVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMT 91
Query: 112 -----------SNVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGR--DGQIAHC 158
N + + + L + + Q GR GR G I
Sbjct: 92 GFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGRGKPG-IYRF 150
Query: 159 ILYYRLPD 166
+ P
Sbjct: 151 VAPGERPS 158
Score = 29.9 bits (67), Expect = 0.21
Identities = 3/34 (8%), Positives = 8/34 (23%), Gaps = 1/34 (2%)
Query: 21 VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQVRI 54
+ + + L + + Q R
Sbjct: 105 TCVTQTVDFSLDPTFTIETTTLPQDAVSRTQ-RR 137
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 60.1 bits (144), Expect = 9e-12
Identities = 65/199 (32%), Positives = 100/199 (50%), Gaps = 32/199 (16%)
Query: 49 FYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHA 108
Y + K LD+L + + R +SGIIY S + ED L+++G+ +AYHA
Sbjct: 8 RYMLMEK----FKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHA 62
Query: 109 KLESN------------------VSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAG 150
LE+N ++AFG+GI+KPNVRFV+H + +++E++YQE+GRAG
Sbjct: 63 GLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAG 122
Query: 151 RDGQIAHCILYYRLPDVFKLSSMV------FDQQTGLANLYNIVSYCLDQTRCRRAIIAS 204
RDG A +L+Y D+ L + Q L + ++ + CRR ++ +
Sbjct: 123 RDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFA-EAQTCRRLVLLN 181
Query: 205 YFDEAWSDTECRGMCDHCR 223
YF E E G CD C
Sbjct: 182 YFGEGRQ--EPCGNCDICL 198
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 53.6 bits (128), Expect = 7e-10
Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 16/119 (13%)
Query: 47 ENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAY 106
N +V + + + L + +I+ S K+C++L +L G+ AY
Sbjct: 8 PNIEEVALSTTGEIPFYGKAIPL--EVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAY 65
Query: 107 HAKLESN-----------VSIAFGLGIDKPN---VRFVIHHCLSKSMENFYQESGRAGR 151
+ L+ + + A G + + + Q GR GR
Sbjct: 66 YRGLDVSVIPTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRTGR 124
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 52.6 bits (125), Expect = 7e-09
Identities = 23/129 (17%), Positives = 39/129 (30%), Gaps = 26/129 (20%)
Query: 61 DCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSI---- 116
D L E+ +R +N I++T + + + EL G++ + +
Sbjct: 146 DKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQ 205
Query: 117 ----------------------AFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQ 154
G+D P V V+ + S Q GR GR
Sbjct: 206 REQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP 265
Query: 155 IAHCILYYR 163
IL +
Sbjct: 266 GRVIILMAK 274
Score = 29.9 bits (66), Expect = 0.21
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 24 AFGLGIDKPNVRFVIHHCLSKSMENFYQ 51
G+D P V V+ + S Q
Sbjct: 228 VGEEGLDVPEVDLVVFYEPVPSAIRSIQ 255
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 50.3 bits (119), Expect = 4e-08
Identities = 19/121 (15%), Positives = 32/121 (26%), Gaps = 33/121 (27%)
Query: 75 RNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKL----------------------ES 112
+ + SIK D+ LR G +V K E
Sbjct: 177 FKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDWDFVVTTDISEM 236
Query: 113 NVSIAFGLGIDK-----------PNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILY 161
+ ID R ++ + + + Q GR GR+ + +
Sbjct: 237 GANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYI 296
Query: 162 Y 162
Y
Sbjct: 297 Y 297
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 48.6 bits (115), Expect = 1e-07
Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 27/145 (18%)
Query: 47 ENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRG------ 100
N V + + + L+ ++ + GIIY + +E E++ E L+N+
Sbjct: 2 RNVEDVAVN----DESISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNKFRIGIVT 55
Query: 101 -LRVSAYHAKLESNVSI---------AFGLGIDKP-NVRFVIHHCLSKSMENFYQESGRA 149
+ Y +E + G+D P +RF + +F
Sbjct: 56 ATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFV----GCPSFRVTIEDI 111
Query: 150 GRDGQIAHCILYYRLPDVFKLSSMV 174
+L Y +V ++ ++
Sbjct: 112 DSLSPQMVKLLAYLYRNVDEIERLL 136
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 47.6 bits (112), Expect = 2e-07
Identities = 24/140 (17%), Positives = 42/140 (30%), Gaps = 14/140 (10%)
Query: 38 IHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECE------- 90
+++ + + R K+ + +L +++ R R II+T +
Sbjct: 56 YDERAYEALRAWEEARRIAFNSKNKIRKLREIL-ERHRKDKIIIFTRHNELVYRISKVFL 114
Query: 91 ------DLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQ 144
E R L S GID P+ + S S + Q
Sbjct: 115 IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQ 174
Query: 145 ESGRAGRDGQIAHCILYYRL 164
GR R + + Y L
Sbjct: 175 RLGRILRPSKGKKEAVLYEL 194
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 45.3 bits (106), Expect = 7e-07
Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 19/129 (14%)
Query: 63 LDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLE----------- 111
+ L DL +I+ + ++ E+L +LRN VSA ++ L
Sbjct: 15 YECLTDLY-DSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEF 73
Query: 112 -------SNVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRL 164
+ GID V VI++ L + EN+ GR GR G+ I +
Sbjct: 74 RSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTN 133
Query: 165 PDVFKLSSM 173
DV + +
Sbjct: 134 EDVGAMREL 142
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 40.3 bits (93), Expect = 4e-05
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%)
Query: 60 KDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFG 119
K +D L + M S + KE E + +E R+ RV + +
Sbjct: 44 KRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL--------ISTDVWA 95
Query: 120 LGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSM 173
G+D P V +I++ L + E + GR+GR G+ I + + D+ L +
Sbjct: 96 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 149
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 39.5 bits (91), Expect = 1e-04
Identities = 21/139 (15%), Positives = 49/139 (35%), Gaps = 4/139 (2%)
Query: 31 KPNVRFVIHHCLSKSMENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECE 90
+ + + + ++ A ++ E++ ++ R + + +
Sbjct: 50 RRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQR 109
Query: 91 DLREELRNRG-LRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRA 149
+ E+ RG ++V L + V++ I + RF + + + Q +GRA
Sbjct: 110 RVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSK-RIKVSEYKQMAGRA 168
Query: 150 GRDGQ--IAHCILYYRLPD 166
GR G I+ D
Sbjct: 169 GRPGMDERGEAIIIVGKRD 187
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 36.9 bits (85), Expect = 0.001
Identities = 20/118 (16%), Positives = 30/118 (25%), Gaps = 32/118 (27%)
Query: 80 IIYTTSIKECEDLREELRNRGLRVSAYHAKL----------------------ESNVSIA 117
+ SI+ + LR G V + K E ++
Sbjct: 40 AWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATDIAEMGANLC 99
Query: 118 FGLGID----------KPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLP 165
+D + I L S + Q GR GR+ YY P
Sbjct: 100 VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEP 157
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 35.7 bits (81), Expect = 0.002
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 117 AFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSM 173
GID ++ VI++ L ++ E++ GR GR G+ I + KL +
Sbjct: 87 VMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYI 143
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 33.8 bits (76), Expect = 0.007
Identities = 26/148 (17%), Positives = 45/148 (30%), Gaps = 25/148 (16%)
Query: 47 ENFYQVRIKPAAQKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAY 106
N Q + +KD L ++ II+ + + + L E+ G +VS
Sbjct: 4 NNIRQYYVLCEHRKDKYQALCNIY-GSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLL 62
Query: 107 HAKLESNVSIA------------------FGLGIDKPNVRFVIHHCLSKS------MENF 142
+L + GID V V++ L E +
Sbjct: 63 SGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETY 122
Query: 143 YQESGRAGRDGQIAHCILYYRLPDVFKL 170
GR GR G+ + ++ L
Sbjct: 123 LHRIGRTGRFGKKGLAFNMIEVDELPSL 150
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 31.9 bits (71), Expect = 0.037
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 121 GIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLPDVFKLSSM 173
GID V VI+ K+ E + GR+GR G + I D F L +
Sbjct: 95 GIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKI 147
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 31.7 bits (71), Expect = 0.038
Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 26/160 (16%)
Query: 51 QVRIKPAA-QKDCLDELADLMSRRFRNQSGIIYTTSIKECEDLREELRNRGLRVSAYHAK 109
+ ++P Q D D + ++ R RN+ ++ T + K EDL + L+ G++V+ H++
Sbjct: 7 TIDVRPTKGQID--DLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSE 64
Query: 110 L---------------ESNVSIAFGL---GIDKPNVRFVIHHCLSK-----SMENFYQES 146
+ + +V + L G+D P V V K S + Q
Sbjct: 65 IKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTI 124
Query: 147 GRAGRDGQIAHCILYYRLPDVFKLSSMVFDQQTGLANLYN 186
GRA R+ + + +++ ++ + YN
Sbjct: 125 GRAARNANGHVIMYADTITKSMEIAIQETKRRRAIQEEYN 164
Score = 25.1 bits (54), Expect = 7.0
Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 15/89 (16%)
Query: 14 WRTSFYQVSIAFGL---GIDKPNVRFVIHHCLSK-----SMENFYQVRIKPAAQKDCLDE 65
R Y V + L G+D P V V K S + Q + A +
Sbjct: 77 LRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANG--- 133
Query: 66 LADLMSRRFRNQSGIIYTTSIKECEDLRE 94
+ + +I+E + R
Sbjct: 134 ----HVIMYADTITKSMEIAIQETKRRRA 158
>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 44
Score = 28.5 bits (64), Expect = 0.090
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 91 DLREELRNRGLRVSAYHAKL 110
L++ L R L V +L
Sbjct: 12 QLKDLLTKRNLSVGGLKNEL 31
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 211
Score = 30.4 bits (68), Expect = 0.14
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 115 SIAFGLGIDKPNVR-FVIHHCLSKSMENFYQESGRAGRDGQIAHCILYYRLP 165
+ GID P +I + +Q GR GR A+ L P
Sbjct: 90 TTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 141
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 30.3 bits (67), Expect = 0.19
Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 22/122 (18%)
Query: 118 FGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRDGQIAHCILYY-------------RL 164
G G++ ++ + N Q R RDGQ C +Y R
Sbjct: 181 GGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQ 240
Query: 165 PDVFKLSSMVFDQQTGLANLYNIVSYCLDQTRCRRAIIASYFDEAWSDTECRGMCDHCRG 224
LSS V D++ + +++ + R + S ++ SDT R C C
Sbjct: 241 AHKKALSSCVVDEEQDVERHFSL-----GELRE----LFSLNEKTLSDTHDRFRCRRCVN 291
Query: 225 GR 226
GR
Sbjct: 292 GR 293
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein
U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 26.4 bits (59), Expect = 0.35
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 91 DLREELRNRGLRVSAYHAKL 110
+LREEL+ RGL A+L
Sbjct: 10 ELREELQRRGLDTRGLKAEL 29
>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 418
Score = 28.2 bits (63), Expect = 0.94
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 107 HAKLESNVSI--AFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRD 152
A +E N+++ +F V V HH ++S + R
Sbjct: 330 QALVEINIAVLYSF----QSDKVTIVDHHSATESFIKHMENEYRCRGG 373
>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 421
Score = 27.8 bits (62), Expect = 1.1
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 107 HAKLESNVSI--AFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRD 152
A E NV++ +F K NV + HH S+S Q RA
Sbjct: 331 RAVTEINVAVLHSF----QKQNVTIMDHHTASESFMKHMQNEYRARGG 374
>d1mjta_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Staphylococcus aureus [TaxId: 1280]}
Length = 346
Score = 27.7 bits (62), Expect = 1.2
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 107 HAKLESNVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRD 152
A +E N ++ K V V H +K E F + + GR
Sbjct: 266 RALVELNYAVYHSF--KKEGVSIVDHLTAAKQFELFERNEAQQGRQ 309
>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Cow (Bos taurus) [TaxId: 9913]}
Length = 416
Score = 27.8 bits (62), Expect = 1.2
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 107 HAKLESNVSIAFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRD 152
A +E N+++ V V HH + S +A
Sbjct: 333 KAAVEINLAVLHSF--QLAKVTIVDHHAATVSFMKHLDNEQKARGG 376
>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Bacillus subtilis [TaxId: 1423]}
Length = 363
Score = 27.7 bits (62), Expect = 1.3
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 107 HAKLESNVSI--AFGLGIDKPNVRFVIHHCLSKSMENFYQESGRAGRD 152
A +E N ++ ++ K V V HH + + F ++ AGR
Sbjct: 279 QALVELNKAVLYSY----KKQGVSIVDHHTAASQFKRFEEQEEEAGRK 322
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70
{Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 25.4 bits (56), Expect = 1.3
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 91 DLREELRNRGLRVS 104
L+E R GL+
Sbjct: 22 MLKEACRAYGLKSG 35
>d2guka1 d.360.1.1 (A:4-114) Hypothetical protein PG1857
{Porphyromonas gingivalis [TaxId: 837]}
Length = 111
Score = 25.8 bits (57), Expect = 2.7
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 80 IIYTTSIKECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHCLSKSM 139
++ T + + E LR+R + A ++ FG K + + +S+
Sbjct: 25 VLATLANDDIPYAEERLRSRQIPYFAQPTPNTERTNLFFG---CKECMEAIRLFVSGRSL 81
Query: 140 ENFYQE 145
+ E
Sbjct: 82 NSLTPE 87
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR,
C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Length = 70
Score = 25.0 bits (55), Expect = 2.7
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 87 KECEDLREELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHCLSK 137
+ E L L R +V + N IA LGI + V+ H+ + K
Sbjct: 4 DQLEQLFSSLTGREQQVLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQK 54
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator
(NarL) {Escherichia coli [TaxId: 562]}
Length = 67
Score = 24.3 bits (53), Expect = 4.1
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 94 EELRNRGLRVSAYHAKLESNVSIAFGLGIDKPNVRFVIHHCLSK 137
+L R + A+ N IA L I + V+ + H L K
Sbjct: 5 NQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKK 48
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa
(Medicago sativa) [TaxId: 3879]}
Length = 244
Score = 25.1 bits (54), Expect = 6.9
Identities = 10/60 (16%), Positives = 19/60 (31%)
Query: 173 MVFDQQTGLANLYNIVSYCLDQTRCRRAIIASYFDEAWSDTECRGMCDHCRGGRRDAKRV 232
V + L+ + ++ A+I WSD +C +C +V
Sbjct: 115 QVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKV 174
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.139 0.432
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 912,375
Number of extensions: 41111
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 42
Length of query: 234
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 152
Effective length of database: 1,281,736
Effective search space: 194823872
Effective search space used: 194823872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.5 bits)