BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4496
(228 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R5Q2|SRRM1_PONAB Serine/arginine repetitive matrix protein 1 OS=Pongo abelii
GN=SRRM1 PE=2 SV=1
Length = 917
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 38/41 (92%)
Query: 16 QKVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLE 56
+KVDM+KV L+++KPWIT+++T++LG EDDVV+ F++NQLE
Sbjct: 36 KKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLE 76
>sp|Q8IYB3|SRRM1_HUMAN Serine/arginine repetitive matrix protein 1 OS=Homo sapiens
GN=SRRM1 PE=1 SV=2
Length = 904
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 38/41 (92%)
Query: 16 QKVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLE 56
+KVDM+KV L+++KPWIT+++T++LG EDDVV+ F++NQLE
Sbjct: 36 KKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLE 76
>sp|Q52KI8|SRRM1_MOUSE Serine/arginine repetitive matrix protein 1 OS=Mus musculus
GN=Srrm1 PE=1 SV=2
Length = 946
Score = 61.6 bits (148), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 39/43 (90%)
Query: 16 QKVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAE 58
+KVDM+KV L+++KPWIT+++T++LG EDDVV+ F++NQLE +
Sbjct: 36 KKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVK 78
>sp|Q5ZMJ9|SRRM1_CHICK Serine/arginine repetitive matrix protein 1 OS=Gallus gallus
GN=SRRM1 PE=2 SV=1
Length = 888
Score = 61.2 bits (147), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 39/43 (90%)
Query: 16 QKVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAE 58
+KVDM+KV L+++KPWIT+++T++LG EDDVV+ F++NQLE +
Sbjct: 36 KKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVK 78
>sp|Q9USH5|YJQ5_SCHPO PWI domain-containing protein C825.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC825.05c PE=1
SV=1
Length = 301
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 17 KVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLE 56
KVDM KV +++LKPWI ++ +L+G ED+VV+ FVY LE
Sbjct: 36 KVDMKKVNIEVLKPWIATRLNELIGFEDEVVINFVYGMLE 75
>sp|Q7YR75|RM12_BOVIN 39S ribosomal protein L12, mitochondrial OS=Bos taurus GN=MRPL12
PE=1 SV=1
Length = 198
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 34/53 (64%)
Query: 153 DGADKTYSPKITKLANDISSLTLLECADLSSLLKKQLNLPDAPMMAMGAFAQG 205
D A K Y PKI +L DI+SLTLLE +DL+ LLKK L + D +M MG G
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPG 106
>sp|Q9DB15|RM12_MOUSE 39S ribosomal protein L12, mitochondrial OS=Mus musculus GN=Mrpl12
PE=1 SV=2
Length = 201
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 34/53 (64%)
Query: 153 DGADKTYSPKITKLANDISSLTLLECADLSSLLKKQLNLPDAPMMAMGAFAQG 205
D A K Y PKI +L DI+SLTLLE +DL+ LLKK L + D +M MG G
Sbjct: 55 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPG 107
>sp|P52827|RM12_CRICR 39S ribosomal protein L12, mitochondrial OS=Cricetus cricetus
GN=MRPL12 PE=2 SV=1
Length = 203
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 33/50 (66%)
Query: 153 DGADKTYSPKITKLANDISSLTLLECADLSSLLKKQLNLPDAPMMAMGAF 202
D A K Y PKI +L DI+SLTLLE +DL+ LLKK L + D +M MG
Sbjct: 56 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGM 105
>sp|P52815|RM12_HUMAN 39S ribosomal protein L12, mitochondrial OS=Homo sapiens GN=MRPL12
PE=1 SV=2
Length = 198
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 153 DGADKTYSPKITKLANDISSLTLLECADLSSLLKKQLNLPDAPMMAMGAFAQG 205
D A K Y PKI +L DI+SLTLLE +DL+ LLKK L + D ++ MG G
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSG 106
>sp|P53163|MNP1_YEAST 54S ribosomal protein L12, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MNP1 PE=1
SV=1
Length = 194
Score = 37.7 bits (86), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 161 PKITKLANDISSLTLLECADLSSLLKKQLNLPDAPM 196
PKI+K+ DIS LTLLE + L + LK LN+P+ M
Sbjct: 52 PKISKIVQDISQLTLLETSSLINELKTVLNIPEISM 87
>sp|O43103|SID2_USTMA Ferrichrome siderophore peptide synthetase OS=Ustilago maydis (strain
521 / FGSC 9021) GN=SID2 PE=3 SV=2
Length = 4114
Score = 35.8 bits (81), Expect = 0.23, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 110 RKTITRTYYSKIYLTCKPTKVSAQTATEAVSSSSEQPFPIPTPDGADKTYSPKITKLAND 169
R I RT ++++ T +SA++ T S++SE PIP+PD ++ + +
Sbjct: 2108 RHEIYRTVFAEVDRTLVQVVLSAESLTSNWSATSE---PIPSPDSLADYHASTAKDIVAN 2164
Query: 170 ISSLTLLECADLSSLLKKQLNLPDAPMMAMGAFAQGRYLRTIF-DATSCEI---KLFPSI 225
ISS+ L L + + P + A G +R + +A+ C + K+ P++
Sbjct: 2165 ISSVPALRL----KLWQGENGAPTLTLTCSHAIYDGDSIRMLLKEASDCLVTKSKVVPAL 2220
Query: 226 P 226
P
Sbjct: 2221 P 2221
>sp|P84399|PAP_EHV1V DNA polymerase processivity factor OS=Equine herpesvirus 1 (strain
V592) GN=18 PE=3 SV=1
Length = 405
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 94 AILMQEVEGRRKILRGRKTITRTYYSKIYLTCK---PTKVSAQTATEAVSSSSEQPFPIP 150
A+ + V+GRR +L K T+T SK+ + P+++ QT A + E
Sbjct: 100 AVFLANVDGRRGLLDAFKAKTQTNVSKVVFEIENYSPSRILTQTVFSARDQTEEDTEMGS 159
Query: 151 TPDGADKTYSPKITKLA-NDISSLTLLECADLS-SLLKKQLN 190
+GA +T S ++ K N+ + + D+S SL K QLN
Sbjct: 160 DAEGATQTVSSRLVKHEFNNYALMLPTRQPDVSMSLSKAQLN 201
>sp|P28958|PAP_EHV1B DNA polymerase processivity factor OS=Equine herpesvirus 1 (strain
Ab4p) GN=18 PE=3 SV=1
Length = 405
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 94 AILMQEVEGRRKILRGRKTITRTYYSKIYLTCK---PTKVSAQTATEAVSSSSEQPFPIP 150
A+ + V+GRR +L K T+T SK+ + P+++ QT A + E
Sbjct: 100 AVFLANVDGRRGLLDAFKAKTQTNVSKVVFEIENYSPSRILTQTVFSARDQTEEDTEMGS 159
Query: 151 TPDGADKTYSPKITKLA-NDISSLTLLECADLS-SLLKKQLN 190
+GA +T S ++ K N+ + + D+S SL K QLN
Sbjct: 160 DAEGATQTVSSRLVKHEFNNYALMLPTRQPDVSMSLSKAQLN 201
>sp|Q8VBX4|CLC4K_MOUSE C-type lectin domain family 4 member K OS=Mus musculus GN=Cd207
PE=2 SV=1
Length = 331
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 17 KVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAEKVSTIFEFDLAKKVPVCK 76
+VD +V++ I+ + + +Q+L +E + +A +QL+ +S L+ K+P K
Sbjct: 104 RVDDAEVQMQIVNTTLKRVRSQILSLETSMKIA--NDQLQILTMSWGEVDSLSAKIPELK 161
Query: 77 -EIGKGDL------GLMQVVTVVLAILMQEVEGRRKILRGRKTITRTYY-----SKIYLT 124
++ K GL + V +L Q+ + + RG K + +Y K + +
Sbjct: 162 RDLDKASALNTKVQGLQNSLENVNKLLKQQSDILEMVARGWKYFSGNFYYFSRTPKTWYS 221
Query: 125 CKPTKVSAQTATEAVSSSSEQPFPIPTPDG 154
+ +S + +VSS SEQ F DG
Sbjct: 222 AEQFCISRKAHLTSVSSESEQKFLYKAADG 251
>sp|Q5ZJ85|PRPF3_CHICK U4/U6 small nuclear ribonucleoprotein Prp3 OS=Gallus gallus
GN=PRPF3 PE=2 SV=1
Length = 684
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 18 VDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYN 53
+ ++K +LD LKPWI + + ++LG + VV N
Sbjct: 1 MSLSKRELDELKPWIEKTVKRVLGFSEPTVVTAALN 36
>sp|Q2KIA6|PRPF3_BOVIN U4/U6 small nuclear ribonucleoprotein Prp3 OS=Bos taurus GN=PRPF3
PE=2 SV=1
Length = 683
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 20 MTKVKLDILKPWITQKITQLLGMEDDVVVAFVYN 53
++K +LD LKPWI + + ++LG + VV N
Sbjct: 3 LSKRELDELKPWIEKTVERVLGFSEPTVVTAALN 36
>sp|Q922U1|PRPF3_MOUSE U4/U6 small nuclear ribonucleoprotein Prp3 OS=Mus musculus
GN=Prpf3 PE=1 SV=1
Length = 683
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 20 MTKVKLDILKPWITQKITQLLGMEDDVVVAFVYN 53
++K +LD LKPWI + + ++LG + VV N
Sbjct: 3 LSKRELDELKPWIEKTVKRVLGFSEPTVVTAALN 36
>sp|Q5R5F1|PRPF3_PONAB U4/U6 small nuclear ribonucleoprotein Prp3 OS=Pongo abelii
GN=PRPF3 PE=2 SV=1
Length = 683
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 20 MTKVKLDILKPWITQKITQLLGMEDDVVVAFVYN 53
++K +LD LKPWI + + ++LG + VV N
Sbjct: 3 LSKRELDELKPWIEKTVKRVLGFSEPTVVTAALN 36
>sp|B1LY44|RL7_METRJ 50S ribosomal protein L7/L12 OS=Methylobacterium radiotolerans
(strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rplL PE=3
SV=1
Length = 125
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 22/26 (84%)
Query: 163 ITKLANDISSLTLLECADLSSLLKKQ 188
+ KL +D+SSLT+LE ADL+ +L+++
Sbjct: 4 LAKLVDDLSSLTVLEAADLAKMLEEK 29
>sp|O43395|PRPF3_HUMAN U4/U6 small nuclear ribonucleoprotein Prp3 OS=Homo sapiens
GN=PRPF3 PE=1 SV=2
Length = 683
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 20 MTKVKLDILKPWITQKITQLLGMEDDVVVAFVYN 53
++K +LD LKPWI + + ++LG + VV N
Sbjct: 3 LSKRELDELKPWIEKTVKRVLGFSEPTVVTAALN 36
>sp|Q01477|UBP3_YEAST Ubiquitin carboxyl-terminal hydrolase 3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBP3 PE=1 SV=1
Length = 912
Score = 31.6 bits (70), Expect = 5.3, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 28/70 (40%)
Query: 111 KTITRTYYSKIYLTCKPTKVSAQTATEAVSSSSEQPFPIPTPDGADKTYSPKITKLANDI 170
KT++ + +K ++ VS+ A S P P DK Y P TK +
Sbjct: 366 KTVSGSMVTKTPISGTTAGVSSTNMAAATIGKSSSPLLSKQPQKKDKKYVPPSTKGIEPL 425
Query: 171 SSLTLLECAD 180
S+ L C D
Sbjct: 426 GSIALRMCFD 435
>sp|A7IKP9|RL7_XANP2 50S ribosomal protein L7/L12 OS=Xanthobacter autotrophicus (strain
ATCC BAA-1158 / Py2) GN=rplL PE=3 SV=1
Length = 124
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 23/26 (88%)
Query: 163 ITKLANDISSLTLLECADLSSLLKKQ 188
+TKL +++SSLT+LE A+L+ LL+++
Sbjct: 4 LTKLVDELSSLTVLEAAELAKLLEEK 29
>sp|A8HTY4|RL7_AZOC5 50S ribosomal protein L7/L12 OS=Azorhizobium caulinodans (strain
ATCC 43989 / DSM 5975 / ORS 571) GN=rplL PE=3 SV=1
Length = 125
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 23/26 (88%)
Query: 163 ITKLANDISSLTLLECADLSSLLKKQ 188
+TKL +++SSLT+LE A+L+ LL+++
Sbjct: 4 LTKLVDELSSLTVLEAAELAKLLEEK 29
>sp|B5ZYS6|RL7_RHILW 50S ribosomal protein L7/L12 OS=Rhizobium leguminosarum bv.
trifolii (strain WSM2304) GN=rplL PE=3 SV=1
Length = 125
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 22/26 (84%)
Query: 163 ITKLANDISSLTLLECADLSSLLKKQ 188
+ K+ +D+SSLT+LE A+LS LL+++
Sbjct: 4 LAKIVDDLSSLTVLEAAELSKLLEEK 29
>sp|Q1MIF0|RL7_RHIL3 50S ribosomal protein L7/L12 OS=Rhizobium leguminosarum bv. viciae
(strain 3841) GN=rplL PE=3 SV=1
Length = 125
Score = 30.8 bits (68), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 22/26 (84%)
Query: 163 ITKLANDISSLTLLECADLSSLLKKQ 188
+ K+ +D+SSLT+LE A+LS LL+++
Sbjct: 4 LAKIVDDLSSLTVLEAAELSKLLEEK 29
>sp|B9JDS0|RL7_AGRRK 50S ribosomal protein L7/L12 OS=Agrobacterium radiobacter (strain
K84 / ATCC BAA-868) GN=rplL PE=3 SV=1
Length = 125
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 22/26 (84%)
Query: 163 ITKLANDISSLTLLECADLSSLLKKQ 188
+ K+ +D+SSLT+LE A+LS LL+++
Sbjct: 4 LAKIVDDLSSLTVLEAAELSKLLEEK 29
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,455,803
Number of Sequences: 539616
Number of extensions: 2754124
Number of successful extensions: 9136
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 9081
Number of HSP's gapped (non-prelim): 69
length of query: 228
length of database: 191,569,459
effective HSP length: 113
effective length of query: 115
effective length of database: 130,592,851
effective search space: 15018177865
effective search space used: 15018177865
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)