Query psy4496
Match_columns 228
No_of_seqs 222 out of 632
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 18:35:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2146|consensus 100.0 8.1E-31 1.8E-35 238.6 4.6 86 5-90 22-123 (354)
2 PF01480 PWI: PWI domain; Int 99.7 1.7E-18 3.7E-23 129.0 3.0 61 25-85 1-71 (77)
3 smart00311 PWI PWI, domain in 99.7 2E-17 4.3E-22 122.6 4.0 64 20-85 1-71 (74)
4 KOG1715|consensus 99.4 3.1E-13 6.6E-18 116.9 6.8 86 131-216 27-124 (187)
5 CHL00083 rpl12 ribosomal prote 99.3 5.5E-12 1.2E-16 104.0 4.8 59 159-217 1-69 (131)
6 TIGR00855 L12 ribosomal protei 99.2 2.2E-11 4.8E-16 99.9 4.6 56 162-217 5-65 (126)
7 PRK00157 rplL 50S ribosomal pr 99.2 3.8E-11 8.2E-16 98.2 4.9 58 160-217 2-62 (123)
8 COG0222 RplL Ribosomal protein 99.1 5.9E-11 1.3E-15 97.2 4.2 55 162-216 4-62 (124)
9 cd00387 Ribosomal_L7_L12 Ribos 99.1 1.5E-10 3.3E-15 94.9 4.7 57 161-217 1-66 (127)
10 KOG2253|consensus 98.5 4.4E-08 9.4E-13 97.7 3.0 73 11-83 576-657 (668)
11 KOG2135|consensus 47.7 19 0.00041 36.3 3.3 59 24-82 5-72 (526)
12 PF13565 HTH_32: Homeodomain-l 31.2 1E+02 0.0022 21.6 4.2 34 160-193 32-66 (77)
13 PF11588 DUF3243: Protein of u 30.2 24 0.00053 27.4 0.9 58 24-87 6-68 (81)
14 COG2975 Uncharacterized protei 27.9 32 0.00069 25.7 1.1 25 17-45 19-43 (64)
15 PF11272 DUF3072: Protein of u 27.8 58 0.0013 24.0 2.4 19 172-190 38-56 (57)
16 PF05361 PP1_inhibitor: PKC-ac 26.4 49 0.0011 28.4 2.1 59 27-85 50-117 (144)
17 COG5051 RPL36A Ribosomal prote 24.8 67 0.0015 25.8 2.4 31 148-178 22-55 (97)
18 PF11517 Nab2: Nuclear abundan 24.5 3.4E+02 0.0074 22.3 6.4 68 27-104 11-81 (107)
19 PF10160 Tmemb_40: Predicted m 23.6 54 0.0012 30.5 2.0 47 77-124 10-56 (261)
20 KOG0898|consensus 22.4 73 0.0016 27.4 2.4 22 115-136 120-141 (152)
21 PF03369 Herpes_UL3: Herpesvir 20.9 43 0.00094 28.3 0.7 20 109-128 16-42 (134)
22 PRK05350 acyl carrier protein; 20.7 1E+02 0.0022 22.6 2.6 28 166-194 32-59 (82)
23 PF14077 WD40_alt: Alternative 20.1 65 0.0014 23.0 1.3 30 80-109 7-36 (48)
No 1
>KOG2146|consensus
Probab=99.96 E-value=8.1e-31 Score=238.63 Aligned_cols=86 Identities=36% Similarity=0.578 Sum_probs=77.3
Q ss_pred cccccCccccccccCccccCcchhhhHHHHHHHHhcCCCchHHHHHHHHHhhccCcc-------chhcccccCchh-HHH
Q psy4496 5 VFALTSKPQVVQKVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAEKVS-------TIFEFDLAKKVP-VCK 76 (228)
Q Consensus 5 ~~~~kfP~~f~~kVDm~KVnl~vikpWI~~rItelLG~EDDVvieyi~~lLe~~~~p-------~I~gFL~~~~a~-F~~ 76 (228)
++.||||++|++||||+||||+||||||++||||||||||||||||||||||+..+| +++|||....|. ||-
T Consensus 22 mkqmKF~~~lekkVDmsKvnleVlkPWItkrvneilgfEDdVViefvynqLee~k~ldpkkmQiNlTGFLngrnAreFmg 101 (354)
T KOG2146|consen 22 MKQMKFPACLEKKVDMSKVNLEVLKPWITKRVNEILGFEDDVVIEFVYNQLEEAKNLDPKKMQINLTGFLNGRNAREFMG 101 (354)
T ss_pred HHhcccHHHHhhhcchhhcchhhhhHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCchheeeeeehhcccccHHHHHH
Confidence 467999999999999999999999999999999999999999999999999996554 569999877765 999
Q ss_pred HHhhhcc--------ChhHHHH
Q psy4496 77 EIGKGDL--------GLMQVVT 90 (228)
Q Consensus 77 eLWkLll--------gi~q~vl 90 (228)
|||.||| |||.-+.
T Consensus 102 eLW~LliS~a~~s~~giP~s~~ 123 (354)
T KOG2146|consen 102 ELWSLLISEASQSQYGIPASFI 123 (354)
T ss_pred HHHHHHHhhccccccCCchHHH
Confidence 9999999 6776544
No 2
>PF01480 PWI: PWI domain; InterPro: IPR002483 The PWI domain, named after a highly conserved PWI tri-peptide located within its N-terminal region, is a ~80 amino acid module, which is found either at the N terminus or at the C terminus of eukaryotic proteins involved in pre-mRNA processing []. It is generally found in association with other domains such as RRM and RS. The PWI domain is a RNA/DNA-binding domain that has an equal preference for single- and double-stranded nucleic acids and is likely to have multiple important functions in pre-mRNA processing []. Proteins containing this domain include the SR-related nuclear matrix protein of 160kDa (SRm160) splicing and 3'-end cleavage-stimulatory factor, and the mammalian splicing factor PRP3. The PWI domain is a soluble, globular and independently folded domain which consists of a four-helix bundle, with structured N- and C-terminal elements [].; GO: 0006397 mRNA processing; PDB: 1MP1_A 1X4Q_A.
Probab=99.72 E-value=1.7e-18 Score=128.97 Aligned_cols=61 Identities=30% Similarity=0.528 Sum_probs=51.8
Q ss_pred cchhhhHHHHHHHHhcCCCchHHHHHHHHHhhccC---c--c-----chhcccccCchhHHHHHhhhccCh
Q psy4496 25 LDILKPWITQKITQLLGMEDDVVVAFVYNQLEAEK---V--S-----TIFEFDLAKKVPVCKEIGKGDLGL 85 (228)
Q Consensus 25 l~vikpWI~~rItelLG~EDDVvieyi~~lLe~~~---~--p-----~I~gFL~~~~a~F~~eLWkLllgi 85 (228)
|++|||||.+||+++||+|||+|+|||+++|.... . | ++.+||+++++.||.+||++|+..
T Consensus 1 l~~lk~WI~~kl~e~lG~edd~lvdyI~~~l~~~~~~~~~~~~~l~~~L~~fL~~~a~~Fv~~Lw~~l~~~ 71 (77)
T PF01480_consen 1 LEKLKPWISKKLEEILGFEDDVLVDYIVALLKSHKSSNEPDPKELQEQLEDFLDEEAEEFVDELWRLLISA 71 (77)
T ss_dssp CHHHHHHHHHHHHHHHSS--CHHHHHHHHHCCTT--SSS--HHHHHHHHTTTTGHHCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999643 2 2 678999988888999999998743
No 3
>smart00311 PWI PWI, domain in splicing factors.
Probab=99.68 E-value=2e-17 Score=122.57 Aligned_cols=64 Identities=31% Similarity=0.561 Sum_probs=55.3
Q ss_pred ccccCcchhhhHHHHHHHHhcCCCchHHHHHHHHHhhccCccc-----h--hcccccCchhHHHHHhhhccCh
Q psy4496 20 MTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAEKVST-----I--FEFDLAKKVPVCKEIGKGDLGL 85 (228)
Q Consensus 20 m~KVnl~vikpWI~~rItelLG~EDDVvieyi~~lLe~~~~p~-----I--~gFL~~~~a~F~~eLWkLllgi 85 (228)
++|||++++||||+++|+++||++||+||+||++++++...|+ | ++|+ ++..||.+||++++..
T Consensus 1 ~~kv~~~~lk~WI~~kv~e~LG~~d~~vvd~i~~~l~~~~~~~~l~~~L~~~~f~--da~~Fv~~Lw~~l~~~ 71 (74)
T smart00311 1 LSKLKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQHKGPQAKLLQINLTGFE--DAEEFVDKLWRLLIFE 71 (74)
T ss_pred CchhHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCChHHHHHHHHhhcch--hHHHHHHHHHHHHHHh
Confidence 4799999999999999999999999999999999999876662 3 4565 4666999999998754
No 4
>KOG1715|consensus
Probab=99.42 E-value=3.1e-13 Score=116.94 Aligned_cols=86 Identities=40% Similarity=0.496 Sum_probs=64.2
Q ss_pred hhhhhhhhhccCCCCCCCC-CCCCCCCCCCChHHHHHHHHHhcchHHHHHHHHHHHHHHcCCCCCccccccc---cc---
Q psy4496 131 SAQTATEAVSSSSEQPFPI-PTPDGADKTYSPKITKLANDISSLTLLECADLSSLLKKQLNLPDAPMMAMGA---FA--- 203 (228)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~-p~~~~~~~~~spKv~~IvdeIs~LTLlEvsELv~~LkeKlGVs~aa~~aaaa---aA--- 203 (228)
|...++.+++.++....+. +.+..+++++++||.+|||+|++||++|++||+++|++||||++.++||+++ ++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~~iv~eIssLtLlE~s~L~~~Lk~kl~i~e~~~~~a~~~g~~~~~~ 106 (187)
T KOG1715|consen 27 IEYPHAFSSSKSSTLSHRATPLPPIAAVPPPPKISKIVDEISSLTLLETSDLVDLLKKKLNIPELPLAPAAAAGAAAPDA 106 (187)
T ss_pred ecchhhcCcccccccccccCCCCcccccCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCCcccchhhccccCCCCCc
Confidence 3455666666665544444 4455588999999999999999999999999999999999999998776533 11
Q ss_pred ccc-----cccccccccc
Q psy4496 204 QGR-----YLRTIFDATS 216 (228)
Q Consensus 204 aaA-----aEkTeFdv~~ 216 (228)
.++ .|+|.|||--
T Consensus 107 ~~a~ee~k~ekt~FdVkL 124 (187)
T KOG1715|consen 107 GGAEEEAKKEKTTFDVKL 124 (187)
T ss_pred ccccccchhhcceEEEEE
Confidence 111 2677799864
No 5
>CHL00083 rpl12 ribosomal protein L12
Probab=99.25 E-value=5.5e-12 Score=104.03 Aligned_cols=59 Identities=27% Similarity=0.306 Sum_probs=47.0
Q ss_pred CChHHHHHHHHHhcchHHHHHHHHHHHHHHcCCCCCccccc--c---c-cc----ccccccccccccce
Q psy4496 159 YSPKITKLANDISSLTLLECADLSSLLKKQLNLPDAPMMAM--G---A-FA----QGRYLRTIFDATSC 217 (228)
Q Consensus 159 ~spKv~~IvdeIs~LTLlEvsELv~~LkeKlGVs~aa~~aa--a---a-aA----aaAaEkTeFdv~~~ 217 (228)
.|+++++|+|+|++||++|++||++.|+++|||++++++++ + + ++ ++++|||+|||.--
T Consensus 1 ~s~k~~~ivd~i~~LTllE~~eLv~~le~~fgv~~~~~~a~~~~~~~a~~~~~~~~~~~EKT~F~V~L~ 69 (131)
T CHL00083 1 MSTKINEIIEELKSLTLLEAAELVKQIEETFGVDASAPVGGGMMSAPAAAAAQAAEEVEEKTEFDVILE 69 (131)
T ss_pred CCchHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCccchhhhhhccccCcccccccchhhhcceeeEEEe
Confidence 47899999999999999999999999999999999874333 1 1 11 12359999999743
No 6
>TIGR00855 L12 ribosomal protein L7/L12. THis model resembles Pfam model pfam00542 but matches the full length of prokaryotic and organellar proteins rather than just the C-terminus.
Probab=99.18 E-value=2.2e-11 Score=99.94 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHcCCCCCccccccc---cc--ccccccccccccce
Q psy4496 162 KITKLANDISSLTLLECADLSSLLKKQLNLPDAPMMAMGA---FA--QGRYLRTIFDATSC 217 (228)
Q Consensus 162 Kv~~IvdeIs~LTLlEvsELv~~LkeKlGVs~aa~~aaaa---aA--aaAaEkTeFdv~~~ 217 (228)
..++|+|+|++||++|++||++.|+++|||++++++++++ ++ ++++|||+|||.--
T Consensus 5 ~~~~ive~i~~LTllE~~eLv~~lee~fgV~a~a~~a~~~a~~~~~~~~~eEKt~f~V~L~ 65 (126)
T TIGR00855 5 SKEQIIEALKEMTVLELSELVKALEEKFGVSAAAPVAAGAAGAAAAAAAAEEKTEFDVILK 65 (126)
T ss_pred cHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCccchhhhcccccccccccccccceeeEEEe
Confidence 3589999999999999999999999999999987543322 11 23359999999743
No 7
>PRK00157 rplL 50S ribosomal protein L7/L12; Reviewed
Probab=99.15 E-value=3.8e-11 Score=98.23 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHhcchHHHHHHHHHHHHHHcCCCCCccccccc-c--cccccccccccccce
Q psy4496 160 SPKITKLANDISSLTLLECADLSSLLKKQLNLPDAPMMAMGA-F--AQGRYLRTIFDATSC 217 (228)
Q Consensus 160 spKv~~IvdeIs~LTLlEvsELv~~LkeKlGVs~aa~~aaaa-a--AaaAaEkTeFdv~~~ 217 (228)
+-++++|+|+|++||++|++||++.|+++|||++++++++++ + +++++|||+|||.--
T Consensus 2 ~~~~~~i~e~i~~LtllE~~eLv~~lee~fgv~a~~~~~~~~~~~~~~~~eEkt~f~V~L~ 62 (123)
T PRK00157 2 ALTKEQIIEALKEMTVLELSELVKALEEKFGVSAAAPVAAAAAAAAAAAAEEKTEFDVVLK 62 (123)
T ss_pred CccHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCccchhccccccccccccccccceeEEEe
Confidence 345789999999999999999999999999999987543322 1 233469999999754
No 8
>COG0222 RplL Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=5.9e-11 Score=97.16 Aligned_cols=55 Identities=24% Similarity=0.317 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHcCCCCCccccccc----ccccccccccccccc
Q psy4496 162 KITKLANDISSLTLLECADLSSLLKKQLNLPDAPMMAMGA----FAQGRYLRTIFDATS 216 (228)
Q Consensus 162 Kv~~IvdeIs~LTLlEvsELv~~LkeKlGVs~aa~~aaaa----aAaaAaEkTeFdv~~ 216 (228)
.+++|+++|++||++|++||++.++++|||++++++++++ ++++++|||+|||.-
T Consensus 4 ~~e~iie~i~~~svlel~eLvk~~eekfgVsaaa~va~a~~~a~a~~aaeEktefdVvL 62 (124)
T COG0222 4 TKEQIIEALKELTVLELSELVKALEEKFGVTAAAPVAAAAAGAAAAEAAEEKTEFDVVL 62 (124)
T ss_pred cHHHHHHHHHHhhHHHHHHHHHHHHHHhCCccchhhhhccccccccccccccceeEEEe
Confidence 4689999999999999999999999999999998655432 223345999999964
No 9
>cd00387 Ribosomal_L7_L12 Ribosomal protein L7/L12. Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of the ribosome. The stalk base consists of a portion of the 23S rRNA and ribosomal proteins L11 and L10. An extended C-terminal helix of L10 provides the binding site for L7/L12. L7/L12 consists of two domains joined by a flexible hinge, with the helical N-terminal domain (NTD) forming pairs of homodimers that bind to the extended helix of L10. It is the only multimeric ribosomal component, with either four or six copies per ribosome that occur as two or three dimers bound to the L10 helix. L7/L12 is the only ribosomal protein that does not interact directly with rRNA, but instead has indirect interactions through L10. The globular C-terminal domains of L7/L12 are highly mobile. They are exposed to the cytoplasm and
Probab=99.06 E-value=1.5e-10 Score=94.88 Aligned_cols=57 Identities=26% Similarity=0.338 Sum_probs=42.9
Q ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHHcCCCCCcccc--c-cc-ccc-c----ccccccccccce
Q psy4496 161 PKITKLANDISSLTLLECADLSSLLKKQLNLPDAPMMA--M-GA-FAQ-G----RYLRTIFDATSC 217 (228)
Q Consensus 161 pKv~~IvdeIs~LTLlEvsELv~~LkeKlGVs~aa~~a--a-aa-aAa-a----AaEkTeFdv~~~ 217 (228)
+++++|+|+|++||++|++||++.|+++|||++.++++ + ++ +++ + ++|||+|||.--
T Consensus 1 ~~~~~i~d~i~~LtllE~~eLv~~le~~~gv~~~~~~~~~~~~a~~~~~~~~~~~~EKt~F~V~L~ 66 (127)
T cd00387 1 LKVEEIVEALKELTLLEAAELVKALEEKFGVSASAAAAAAAAAAPAAAAAAAAEAEEKTEFDVVLE 66 (127)
T ss_pred CcHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCcccccccccccCcccccccccchhhcceEEEEEe
Confidence 36899999999999999999999999999999853221 1 11 111 1 138999999743
No 10
>KOG2253|consensus
Probab=98.53 E-value=4.4e-08 Score=97.68 Aligned_cols=73 Identities=16% Similarity=0.297 Sum_probs=60.6
Q ss_pred ccccccccCccccCcc----hhhhHHHHHHHHhcCCCchHHHHHHHHHhhccCcc-ch----hcccccCchhHHHHHhhh
Q psy4496 11 KPQVVQKVDMTKVKLD----ILKPWITQKITQLLGMEDDVVVAFVYNQLEAEKVS-TI----FEFDLAKKVPVCKEIGKG 81 (228)
Q Consensus 11 P~~f~~kVDm~KVnl~----vikpWI~~rItelLG~EDDVvieyi~~lLe~~~~p-~I----~gFL~~~~a~F~~eLWkL 81 (228)
+..|..++|-++||-. .|+|||+++|+|+||.++|-+||||++.+.....| +| ..-|+++...|+.++|+|
T Consensus 576 eeLf~~pidw~~ld~~lm~~rirpwV~KKIiEflGeeE~tLVdFI~s~i~~h~~~q~iL~dl~~ilDEdAE~FV~KmWRl 655 (668)
T KOG2253|consen 576 EELFAYPIDWDELDSILMNERIRPWVNKKIIEFLGEEEDTLVDFICSNIRQHSSPQQILDDLAMILDEDAEVFVVKMWRL 655 (668)
T ss_pred HHHhhCcccHHHHhhHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 4568888888888865 68999999999999999999999999999988776 34 344544444599999999
Q ss_pred cc
Q psy4496 82 DL 83 (228)
Q Consensus 82 ll 83 (228)
|+
T Consensus 656 Li 657 (668)
T KOG2253|consen 656 LI 657 (668)
T ss_pred HH
Confidence 87
No 11
>KOG2135|consensus
Probab=47.73 E-value=19 Score=36.27 Aligned_cols=59 Identities=15% Similarity=0.325 Sum_probs=45.7
Q ss_pred CcchhhhHHHHHHHHhcCCCchHHHHHHHHHhhccC-cc--------chhcccccCchhHHHHHhhhc
Q psy4496 24 KLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAEK-VS--------TIFEFDLAKKVPVCKEIGKGD 82 (228)
Q Consensus 24 nl~vikpWI~~rItelLG~EDDVvieyi~~lLe~~~-~p--------~I~gFL~~~~a~F~~eLWkLl 82 (228)
|-+.||.|..+-..=|---+-..+..||+-+++.+. .+ |+.-||.+.+.+|+.+|..-+
T Consensus 5 n~d~Lk~wlsd~lePi~Dadpsala~yvlal~kkdkse~elk~~~~~ql~vfl~~et~pfv~K~fda~ 72 (526)
T KOG2135|consen 5 NADALKDWLSDALEPICDADPSALAKYVLALLKKDKSEKELKALCIEQLDVFLRQETIPFVDKLFDAL 72 (526)
T ss_pred cHHHHHHHHhhhccCcccCChHHHHHHHHHHhhcCCCchhhhhhhHHhcchhhhcccchHHHHHHHhh
Confidence 567899999877555554455789999999999643 22 556799999999999998763
No 12
>PF13565 HTH_32: Homeodomain-like domain
Probab=31.16 E-value=1e+02 Score=21.62 Aligned_cols=34 Identities=9% Similarity=0.210 Sum_probs=25.0
Q ss_pred ChHH-HHHHHHHhcchHHHHHHHHHHHHHHcCCCC
Q psy4496 160 SPKI-TKLANDISSLTLLECADLSSLLKKQLNLPD 193 (228)
Q Consensus 160 spKv-~~IvdeIs~LTLlEvsELv~~LkeKlGVs~ 193 (228)
++.+ +.|++-+.+-...-..++...|+++||++.
T Consensus 32 ~~e~~~~i~~~~~~~p~wt~~~i~~~L~~~~g~~~ 66 (77)
T PF13565_consen 32 DPEQRERIIALIEEHPRWTPREIAEYLEEEFGISV 66 (77)
T ss_pred cHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCC
Confidence 5555 677777676556667777888999999864
No 13
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=30.15 E-value=24 Score=27.41 Aligned_cols=58 Identities=17% Similarity=0.247 Sum_probs=32.2
Q ss_pred CcchhhhHHHHHHH--HhcCCCchHHHHHHHHH---hhccCccchhcccccCchhHHHHHhhhccChhH
Q psy4496 24 KLDILKPWITQKIT--QLLGMEDDVVVAFVYNQ---LEAEKVSTIFEFDLAKKVPVCKEIGKGDLGLMQ 87 (228)
Q Consensus 24 nl~vikpWI~~rIt--elLG~EDDVvieyi~~l---Le~~~~p~I~gFL~~~~a~F~~eLWkLllgi~q 87 (228)
|++..|....+||. +-+|+.||.+.++.|.. |...-.| ...+.+..+|||+-=-.=.+
T Consensus 6 nf~~wK~~Lg~~v~~ae~~Gms~e~i~~~A~~iGdyLA~~vdP------~N~EerlLkELW~va~e~Eq 68 (81)
T PF11588_consen 6 NFDQWKDFLGDRVEQAEKLGMSEETIANLAYQIGDYLAKNVDP------KNPEERLLKELWDVADEEEQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHT-----------SHHHHHHHHHHHC--HHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCC------CCHHHHHHHHHHHhCCHHHH
Confidence 56777888888887 46799999988887753 2222222 12233499999986443333
No 14
>COG2975 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.86 E-value=32 Score=25.73 Aligned_cols=25 Identities=36% Similarity=0.648 Sum_probs=21.9
Q ss_pred ccCccccCcchhhhHHHHHHHHhcCCCch
Q psy4496 17 KVDMTKVKLDILKPWITQKITQLLGMEDD 45 (228)
Q Consensus 17 kVDm~KVnl~vikpWI~~rItelLG~EDD 45 (228)
-||.+.||.--+..||- ||=||+||
T Consensus 19 dvDPktvrFtdlh~wi~----eL~~FdDD 43 (64)
T COG2975 19 DVDPKTVRFTDLHQWIC----ELEEFDDD 43 (64)
T ss_pred CCCcceeehhhHHHHHH----hCcccCCC
Confidence 49999999999999985 67799887
No 15
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=27.81 E-value=58 Score=23.95 Aligned_cols=19 Identities=26% Similarity=0.216 Sum_probs=17.5
Q ss_pred cchHHHHHHHHHHHHHHcC
Q psy4496 172 SLTLLECADLSSLLKKQLN 190 (228)
Q Consensus 172 ~LTLlEvsELv~~LkeKlG 190 (228)
.||-.|++++++.|+.+.|
T Consensus 38 ~LtkaeAs~rId~L~~~~g 56 (57)
T PF11272_consen 38 DLTKAEASERIDELQAQTG 56 (57)
T ss_pred cccHHHHHHHHHHHHHHhC
Confidence 6999999999999999876
No 16
>PF05361 PP1_inhibitor: PKC-activated protein phosphatase-1 inhibitor; InterPro: IPR008025 Contractility of vascular smooth muscle depends on phosphorylation of myosin light chains, and is modulated by hormonal control of myosin phosphatase activity. Signaling pathways activate kinases such as PKC or Rho-dependent kinases that phosphorylate the myosin phosphatase inhibitor protein called CPI-17. Phosphorylation of CPI-17 at Thr-38 enhances its inhibitory potency 1000-fold, creating a molecular switch for regulating contraction [].; GO: 0042325 regulation of phosphorylation, 0005737 cytoplasm; PDB: 2RLT_A 1J2M_A 1K5O_A 1J2N_A.
Probab=26.41 E-value=49 Score=28.36 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=35.4
Q ss_pred hhhhHHHHHHHHhc-CCCchHHHHH-HHHHhhccCcc----chhcccc---cCchhHHHHHhhhccCh
Q psy4496 27 ILKPWITQKITQLL-GMEDDVVVAF-VYNQLEAEKVS----TIFEFDL---AKKVPVCKEIGKGDLGL 85 (228)
Q Consensus 27 vikpWI~~rItelL-G~EDDVviey-i~~lLe~~~~p----~I~gFL~---~~~a~F~~eLWkLllgi 85 (228)
.+..||..++++|. +-|||+-.|. |-++|+-++.. -|.++|. +.+..|+.||-.-|-|+
T Consensus 50 ~vE~WId~qL~eLy~~~e~~~p~EIDIDeLLDl~sdeeR~~~LqelL~~C~~ptE~FI~ELL~kLkgL 117 (144)
T PF05361_consen 50 DVEEWIDEQLQELYDCQEDEMPEEIDIDELLDLESDEERRRKLQELLQDCPKPTEDFIQELLSKLKGL 117 (144)
T ss_dssp HHHHHHHHHHHHCSSSSSTTS-SSSHHHHHHCTSSTTHHHHHHHHHHTTCSSTTHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCcccHHHHhcCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhh
Confidence 46789999999999 4455553221 34555543332 2556664 34455888887665544
No 17
>COG5051 RPL36A Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]
Probab=24.78 E-value=67 Score=25.75 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=23.2
Q ss_pred CCCCCCCCCCCCChH---HHHHHHHHhcchHHHH
Q psy4496 148 PIPTPDGADKTYSPK---ITKLANDISSLTLLEC 178 (228)
Q Consensus 148 ~~p~~~~~~~~~spK---v~~IvdeIs~LTLlEv 178 (228)
+++.||-...+.|++ +..||++|++|+..|-
T Consensus 22 p~~rps~kkgq~s~Rt~fvrsivrEiaGlsPyEr 55 (97)
T COG5051 22 PPERPSRKKGQLSKRTEFVRSIVREIAGLSPYER 55 (97)
T ss_pred CCCCcchhhhccccHHHHHHHHHHHHccCCHHHH
Confidence 455666555566665 5899999999999984
No 18
>PF11517 Nab2: Nuclear abundant poly(A) RNA-bind protein 2 (Nab2); InterPro: IPR021083 Nab2 is a yeast heterogeneous nuclear ribonucleoprotein that modulates poly(A) tail length and mRNA. This is the N-terminal domain of the protein which mediates interactions with the C-terminal globular domain, Myosin-like protein 1 and the mRNA export factor, Gfd1 []. The N-terminal domain of Nab2 shows a structure of a helical fold. The N-terminal domain of Nab2 is thought to mediate protein:protein interactions that facilitate the nuclear export of mRNA []. An essential hydrophobic Phe73 patch on the N-terminal domain is thought to be an important component of the interface between Nab2 and Mlp1 [].; PDB: 3LCN_B 2V75_A 2JPS_A.
Probab=24.48 E-value=3.4e+02 Score=22.25 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=42.9
Q ss_pred hhhhHHHHHHHHhcCCCchH--HHHHHHHHhhccCccchhcccccCchhHHHHHhhhccChhHHHH-HHHHHHHHHHHhH
Q psy4496 27 ILKPWITQKITQLLGMEDDV--VVAFVYNQLEAEKVSTIFEFDLAKKVPVCKEIGKGDLGLMQVVT-VVLAILMQEVEGR 103 (228)
Q Consensus 27 vikpWI~~rItelLG~EDDV--vieyi~~lLe~~~~p~I~gFL~~~~a~F~~eLWkLllgi~q~vl-vvla~e~eE~~~~ 103 (228)
-+|--|++|+..+=.|.+|| |.|||.=|+.... --..-+.||-.|.-+++++.+ -|.-.-....++.
T Consensus 11 nLK~iVaEkL~~l~NFnEDv~YVAEyIvlLisNgg----------s~esivqELssLFD~vs~~~l~~VVQtaF~ale~L 80 (107)
T PF11517_consen 11 NLKVIVAEKLKTLPNFNEDVNYVAEYIVLLISNGG----------SVESIVQELSSLFDSVSTEALTDVVQTAFFALEAL 80 (107)
T ss_dssp HHHHHHHHHHTTSTT--SSHHHHHHHHHHHHHTT------------HHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCccccHHHHHHHhheeeeCCC----------CHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 46777899999888887765 7888887776522 223378899999888888776 3344444555554
Q ss_pred H
Q psy4496 104 R 104 (228)
Q Consensus 104 r 104 (228)
|
T Consensus 81 q 81 (107)
T PF11517_consen 81 Q 81 (107)
T ss_dssp H
T ss_pred h
Confidence 4
No 19
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=23.64 E-value=54 Score=30.53 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=38.9
Q ss_pred HHhhhccChhHHHHHHHHHHHHHHHhHHhhhccccccccccccccccc
Q psy4496 77 EIGKGDLGLMQVVTVVLAILMQEVEGRRKILRGRKTITRTYYSKIYLT 124 (228)
Q Consensus 77 eLWkLllgi~q~vlvvla~e~eE~~~~r~~~rg~~t~~~~~~~~~~~~ 124 (228)
-+|.+++-+|+ ++-++=.-.+=-+++||+.+||++|=++||-=+++.
T Consensus 10 ~~~d~~l~vPn-~lFllfL~~~~~~s~~KL~~~~SpI~~tyY~llw~v 56 (261)
T PF10160_consen 10 RIWDVVLLVPN-LLFLLFLAWRLRKSRRKLRHTRSPIFITYYALLWVV 56 (261)
T ss_pred EehHHHHHHHH-HHHHHHHHHhchHHHHHHhcCCCccHHHHHHHHHHH
Confidence 47999999999 565777778888899999999999999998744443
No 20
>KOG0898|consensus
Probab=22.37 E-value=73 Score=27.45 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=16.5
Q ss_pred cccccccccccCCccchhhhhh
Q psy4496 115 RTYYSKIYLTCKPTKVSAQTAT 136 (228)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~ 136 (228)
|-|+.-..|||||.|.+--+..
T Consensus 120 GhYL~eFsiTykpvkHgrpgig 141 (152)
T KOG0898|consen 120 GHYLGEFSITYKPVKHGRPGIG 141 (152)
T ss_pred hhhhhhccccccccccCCCCCC
Confidence 5566667799999998865555
No 21
>PF03369 Herpes_UL3: Herpesvirus UL3 protein; InterPro: IPR005035 Herpes simplex viruses are large DNA viruses, the genome of which encode approximately 80 genes. The UL3 gene of Human herpesvirus 2 (HHV-2) is predicted to encode a 233 amino acid protein with a molecular mass of 26 kDa. Homologues of the UL3 protein are encoded only among alphaherpesviruses. The function of the UL3 protein of Herpes simplex viruses remains unknown but it is known to localize to the nucleus and is a phosphoprotein [].
Probab=20.89 E-value=43 Score=28.27 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=15.6
Q ss_pred cccccc-------cccccccccccCCc
Q psy4496 109 GRKTIT-------RTYYSKIYLTCKPT 128 (228)
Q Consensus 109 g~~t~~-------~~~~~~~~~~~~~~ 128 (228)
||++|| +.+++++-|.|.-|
T Consensus 16 GRRQLTDTIRkdl~~sl~~~~iACTKT 42 (134)
T PF03369_consen 16 GRRQLTDTIRKDLRMSLAKFTIACTKT 42 (134)
T ss_pred hhhhhhHHHHHHHHHHhhcCceEEecc
Confidence 777777 77888899999544
No 22
>PRK05350 acyl carrier protein; Provisional
Probab=20.72 E-value=1e+02 Score=22.57 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=23.3
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHcCCCCC
Q psy4496 166 LANDISSLTLLECADLSSLLKKQLNLPDA 194 (228)
Q Consensus 166 IvdeIs~LTLlEvsELv~~LkeKlGVs~a 194 (228)
+.+.+ ++.-+...+++-.|+++|||.-.
T Consensus 32 l~~dl-g~DSld~veli~~lE~~fgI~i~ 59 (82)
T PRK05350 32 LYEDL-DLDSIDAVDLVVHLQKLTGKKIK 59 (82)
T ss_pred chhhc-CCCHHHHHHHHHHHHHHHCCccC
Confidence 44555 88889999999999999999644
No 23
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=20.11 E-value=65 Score=22.96 Aligned_cols=30 Identities=37% Similarity=0.348 Sum_probs=21.2
Q ss_pred hhccChhHHHHHHHHHHHHHHHhHHhhhcc
Q psy4496 80 KGDLGLMQVVTVVLAILMQEVEGRRKILRG 109 (228)
Q Consensus 80 kLllgi~q~vlvvla~e~eE~~~~r~~~rg 109 (228)
|.++|-....-+-.+-..+|++-.|||+|.
T Consensus 7 Knv~G~~e~l~vrv~eLEeEV~~LrKINrd 36 (48)
T PF14077_consen 7 KNVLGDQEQLRVRVSELEEEVRTLRKINRD 36 (48)
T ss_pred ccccCCcchheeeHHHHHHHHHHHHHHhHH
Confidence 344555544555567778999999999985
Done!