Your job contains 1 sequence.
>psy4496
MNWAVFALTSKPQVVQKVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAEKV
STIFEFDLAKKVPVCKEIGKGDLGLMQVVTVVLAILMQEVEGRRKILRGRKTITRTYYSK
IYLTCKPTKVSAQTATEAVSSSSEQPFPIPTPDGADKTYSPKITKLANDISSLTLLECAD
LSSLLKKQLNLPDAPMMAMGAFAQGRYLRTIFDATSCEIKLFPSIPGK
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4496
(228 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-050417-187 - symbol:mrpl12 "mitochondrial r... 167 8.2e-12 1
FB|FBgn0036340 - symbol:SRm160 "SRm160" species:7227 "Dro... 169 2.0e-11 1
ZFIN|ZDB-GENE-040426-2789 - symbol:srrm1 "serine/arginine... 168 2.4e-11 1
UNIPROTKB|E1BYZ6 - symbol:E1BYZ6 "Uncharacterized protein... 159 1.4e-10 2
MGI|MGI:1858303 - symbol:Srrm1 "serine/arginine repetitiv... 159 3.1e-10 2
FB|FBgn0011787 - symbol:mRpL12 "mitochondrial ribosomal p... 144 4.1e-10 1
UNIPROTKB|E1BP16 - symbol:SRRM1 "Uncharacterized protein"... 159 4.4e-10 2
UNIPROTKB|Q8IYB3 - symbol:SRRM1 "Serine/arginine repetiti... 159 4.4e-10 2
UNIPROTKB|A9Z1X7 - symbol:SRRM1 "Serine/arginine repetiti... 159 4.5e-10 2
UNIPROTKB|E9PCT1 - symbol:SRRM1 "Serine/arginine repetiti... 159 4.5e-10 2
UNIPROTKB|E1BYZ7 - symbol:E1BYZ7 "Uncharacterized protein... 159 8.0e-10 1
RGD|1311258 - symbol:Srrm1 "serine/arginine repetitive ma... 159 9.4e-10 2
UNIPROTKB|D4A1M8 - symbol:Srrm1 "Protein Srrm1" species:1... 159 1.0e-09 2
UNIPROTKB|I3LSY1 - symbol:MRPL12 "Uncharacterized protein... 140 1.2e-09 1
UNIPROTKB|E1BQL1 - symbol:E1BQL1 "Uncharacterized protein... 159 1.3e-09 1
UNIPROTKB|Q5ZMJ9 - symbol:SRRM1 "Serine/arginine repetiti... 159 2.5e-09 1
UNIPROTKB|E1BQL2 - symbol:E1BQL2 "Uncharacterized protein... 159 2.7e-09 1
UNIPROTKB|E1C3B6 - symbol:MRPL12 "Uncharacterized protein... 138 1.3e-08 1
WB|WBGene00012361 - symbol:mrpl-12 species:6239 "Caenorha... 129 2.5e-08 1
UNIPROTKB|O18180 - symbol:mrpl-12 "Protein MRPL-12" speci... 129 2.5e-08 1
UNIPROTKB|P52827 - symbol:MRPL12 "39S ribosomal protein L... 137 4.8e-08 1
MGI|MGI:1926273 - symbol:Mrpl12 "mitochondrial ribosomal ... 136 5.9e-08 1
UNIPROTKB|Q7YR75 - symbol:MRPL12 "39S ribosomal protein L... 135 7.4e-08 1
WB|WBGene00004706 - symbol:rsr-1 species:6239 "Caenorhabd... 144 1.6e-07 1
TAIR|locus:2043172 - symbol:AT2G29210 species:3702 "Arabi... 145 2.0e-07 1
UNIPROTKB|A5PJ86 - symbol:MRPL12 "Uncharacterized protein... 135 2.1e-07 1
UNIPROTKB|E2QVI3 - symbol:MRPL12 "Uncharacterized protein... 130 4.0e-07 1
UNIPROTKB|P52815 - symbol:MRPL12 "39S ribosomal protein L... 130 4.0e-07 1
RGD|1588559 - symbol:Mrpl12 "mitochondrial ribosomal prot... 135 4.6e-07 1
ASPGD|ASPL0000037847 - symbol:AN10349 species:162425 "Eme... 137 8.1e-07 1
UNIPROTKB|H9KUU7 - symbol:LOC100848134 "Uncharacterized p... 135 1.3e-06 1
POMBASE|SPCC825.05c - symbol:SPCC825.05c "splicing coacti... 131 1.8e-06 1
UNIPROTKB|F6XRN5 - symbol:MRPL12 "Uncharacterized protein... 130 5.0e-06 1
UNIPROTKB|B4DLN1 - symbol:SLC25A10 "Uncharacterized prote... 130 5.0e-06 1
TAIR|locus:2115385 - symbol:AT4G36420 species:3702 "Arabi... 113 4.3e-05 1
ASPGD|ASPL0000042202 - symbol:AN2057 species:162425 "Emer... 111 9.7e-05 1
SGD|S000003036 - symbol:MNP1 "Protein associated with the... 106 0.00054 1
>ZFIN|ZDB-GENE-050417-187 [details] [associations]
symbol:mrpl12 "mitochondrial ribosomal protein L12"
species:7955 "Danio rerio" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] InterPro:IPR013823 Pfam:PF00542 ProDom:PD001326
Pfam:PF00153 ZFIN:ZDB-GENE-050417-187 GO:GO:0016021 GO:GO:0006412
GO:GO:0006810 GO:GO:0005840 GO:GO:0003735 Gene3D:1.50.40.10
InterPro:IPR018108 InterPro:IPR023395 SUPFAM:SSF103506
PROSITE:PS50920 Gene3D:3.30.1390.10 InterPro:IPR014719
SUPFAM:SSF54736 GeneTree:ENSGT00670000098021 EMBL:CU570772
IPI:IPI00995732 Ensembl:ENSDART00000109544 ArrayExpress:F1QDE0
Bgee:F1QDE0 Uniprot:F1QDE0
Length = 412
Score = 167 (63.8 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 36/72 (50%), Positives = 46/72 (63%)
Query: 132 AQTATEAVSSSSEQPFPIPTPDGADKTYSPKITKLANDISSLTLLECADLSSLLKKQLNL 191
AQ + S S+ P DG K YSPKI +L NDI+SLTL+E +DL+ LLKK LN+
Sbjct: 1 AQRTLKTSSVSAVDAIATPHLDGTPKEYSPKIQQLVNDIASLTLIEVSDLNELLKKTLNI 60
Query: 192 PDAPMMAMGAFA 203
D MM+MG+ A
Sbjct: 61 QDVGMMSMGSMA 72
>FB|FBgn0036340 [details] [associations]
symbol:SRm160 "SRm160" species:7227 "Drosophila melanogaster"
[GO:0035145 "exon-exon junction complex" evidence=TAS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] InterPro:IPR002483 Pfam:PF01480 PROSITE:PS51025
SMART:SM00311 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0035145 Gene3D:1.20.1390.10 SUPFAM:SSF101233 eggNOG:NOG242213
EMBL:BT015197 ProteinModelPortal:Q6AWQ1 SMR:Q6AWQ1 STRING:Q6AWQ1
PaxDb:Q6AWQ1 PRIDE:Q6AWQ1 FlyBase:FBgn0036340 InParanoid:Q6AWQ1
OrthoDB:EOG4MSBFJ ArrayExpress:Q6AWQ1 Bgee:Q6AWQ1 Uniprot:Q6AWQ1
Length = 954
Score = 169 (64.5 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 31/44 (70%), Positives = 40/44 (90%)
Query: 16 QKVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAEK 59
++VDM+KVKLD+L+PWI++KIT +L +EDDVVV FVYNQLE EK
Sbjct: 33 KRVDMSKVKLDVLRPWISKKITDILHIEDDVVVEFVYNQLEEEK 76
>ZFIN|ZDB-GENE-040426-2789 [details] [associations]
symbol:srrm1 "serine/arginine repetitive matrix 1"
species:7955 "Danio rerio" [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR002483 Pfam:PF01480 PROSITE:PS51025
SMART:SM00311 ZFIN:ZDB-GENE-040426-2789 GO:GO:0006397
Gene3D:1.20.1390.10 SUPFAM:SSF101233 GeneTree:ENSGT00650000093061
EMBL:CU972452 IPI:IPI00485267 Ensembl:ENSDART00000121848
Uniprot:E7F1X7
Length = 929
Score = 168 (64.2 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 30/44 (68%), Positives = 40/44 (90%)
Query: 16 QKVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAEK 59
+KVDMTKV L+++KPWITQ++T++LG EDDVV+ FV+NQLE EK
Sbjct: 36 KKVDMTKVNLEVIKPWITQRVTEILGFEDDVVIEFVFNQLE-EK 78
>UNIPROTKB|E1BYZ6 [details] [associations]
symbol:E1BYZ6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR002483 Pfam:PF01480 PROSITE:PS51025 SMART:SM00311
GO:GO:0006397 Gene3D:1.20.1390.10 SUPFAM:SSF101233
GeneTree:ENSGT00650000093061 EMBL:AADN02043953 EMBL:AADN02043954
EMBL:AADN02043955 EMBL:AADN02043956 EMBL:AADN02043957
EMBL:AADN02043958 EMBL:AADN02043959 EMBL:AADN02043960
EMBL:AADN02043961 EMBL:AADN02043962 IPI:IPI00820435
Ensembl:ENSGALT00000041107 ArrayExpress:E1BYZ6 Uniprot:E1BYZ6
Length = 643
Score = 159 (61.0 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 25/43 (58%), Positives = 39/43 (90%)
Query: 16 QKVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAE 58
+KVDM+KV L+++KPWIT+++T++LG EDDVV+ F++NQLE +
Sbjct: 36 KKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVK 78
Score = 43 (20.2 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 9/44 (20%), Positives = 22/44 (50%)
Query: 120 KIYLTCKPTKVSAQTATEAVSSSSEQPFPIPTPDGADKTYSPKI 163
++ T +P K +++ + S + + P +P A ++Y P +
Sbjct: 577 RVSRTPEPKKTKSRSPSANWSPAKKAKSPTQSPSPARRSYLPAV 620
>MGI|MGI:1858303 [details] [associations]
symbol:Srrm1 "serine/arginine repetitive matrix 1"
species:10090 "Mus musculus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR002483 Pfam:PF01480 PROSITE:PS51025
SMART:SM00311 MGI:MGI:1858303 GO:GO:0003677 GO:GO:0016607
GO:GO:0005681 GO:GO:0016363 GO:GO:0000398 GO:GO:0071013
Gene3D:1.20.1390.10 SUPFAM:SSF101233 EMBL:AL627185 CTD:10250
eggNOG:NOG330576 HOVERGEN:HBG054044 KO:K13171 ChiTaRS:SRRM1
EMBL:AF062655 EMBL:AL627078 EMBL:BC094322 EMBL:AK008284
IPI:IPI00605037 IPI:IPI01016218 RefSeq:NP_058079.2 UniGene:Mm.1963
ProteinModelPortal:Q52KI8 SMR:Q52KI8 IntAct:Q52KI8 STRING:Q52KI8
PhosphoSite:Q52KI8 PaxDb:Q52KI8 PRIDE:Q52KI8 GeneID:51796
KEGG:mmu:51796 UCSC:uc008vgf.2 HOGENOM:HOG000168326
InParanoid:Q52KI8 NextBio:308036 Bgee:Q52KI8 CleanEx:MM_SRRM1
Genevestigator:Q52KI8 GermOnline:ENSMUSG00000028809 Uniprot:Q52KI8
Length = 946
Score = 159 (61.0 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 25/43 (58%), Positives = 39/43 (90%)
Query: 16 QKVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAE 58
+KVDM+KV L+++KPWIT+++T++LG EDDVV+ F++NQLE +
Sbjct: 36 KKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVK 78
Score = 44 (20.5 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 124 TCKPTKVSAQTATEAVSSSSEQPFPIPTP 152
T P VSA T T S+ E+P P P
Sbjct: 885 TAAPAAVSAATTT----SAQEEPAAAPEP 909
Score = 40 (19.1 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 115 RTYYSKIYLTCKPTKVSAQTATEAVSSSSEQPFPIPTP 152
RT S++ ++ P + S + + E P P P P
Sbjct: 420 RTRKSRVSVS--PGRTSGKVTKHKGTEKRESPSPAPKP 455
Score = 39 (18.8 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 148 PIPTPDGADKTYSPKITKLANDISSLTLLECADLSSLLK 186
P P P+ +K SP++ + + + ++ E S +LK
Sbjct: 210 PSPAPEKKEK--SPELPEPSVRMKDSSVQEATSTSDILK 246
>FB|FBgn0011787 [details] [associations]
symbol:mRpL12 "mitochondrial ribosomal protein L12"
species:7227 "Drosophila melanogaster" [GO:0005762 "mitochondrial
large ribosomal subunit" evidence=ISS] [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0005763 "mitochondrial small ribosomal subunit"
evidence=ISS] [GO:0016049 "cell growth" evidence=IMP] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IGI] InterPro:IPR008932 InterPro:IPR013823 Pfam:PF00542
ProDom:PD001326 EMBL:AE014296 GO:GO:0005811 GO:GO:0006412
GO:GO:0016049 GO:GO:0003682 GO:GO:0005762 GO:GO:0003735
GO:GO:0007005 Gene3D:3.30.1390.10 InterPro:IPR014719
SUPFAM:SSF54736 InterPro:IPR015607 PANTHER:PTHR11809:SF2
SUPFAM:SSF48300 GeneTree:ENSGT00390000000190 OMA:QKSVMEI CTD:6182
FlyBase:FBgn0011787 EMBL:AY060871 EMBL:AY075505
RefSeq:NP_001246688.1 RefSeq:NP_524742.1 UniGene:Dm.1433 SMR:Q9VSR5
IntAct:Q9VSR5 MINT:MINT-1720242 STRING:Q9VSR5
EnsemblMetazoa:FBtr0076511 GeneID:44326 KEGG:dme:Dmel_CG5012
UCSC:CG5012-RA InParanoid:Q9VSR5 GenomeRNAi:44326 NextBio:837172
Uniprot:Q9VSR5
Length = 182
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 36/91 (39%), Positives = 55/91 (60%)
Query: 113 ITRTYYSKIYLTCKPTKVSAQTATEAVSSSSEQPFPIPTPDGADKTYSPKITKLANDISS 172
ITR +I + ++ + A A S +E+ P P P+GA K +PK+ + N+I++
Sbjct: 3 ITRLALRQISRQVQLHRMYSAAAPAAAVSGAEKLVP-PAPEGAAKPPNPKLDSIVNNIAA 61
Query: 173 LTLLECADLSSLLKKQLNLPD---APMMAMG 200
L LLE A+LS+LLK++LNLP+ AP A G
Sbjct: 62 LNLLEVAELSTLLKQKLNLPETAFAPQFAAG 92
>UNIPROTKB|E1BP16 [details] [associations]
symbol:SRRM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR002483
Pfam:PF01480 PROSITE:PS51025 SMART:SM00311 GO:GO:0006397
GO:GO:0071013 Gene3D:1.20.1390.10 SUPFAM:SSF101233 CTD:10250
KO:K13171 GeneTree:ENSGT00650000093061 OMA:ILKAPKP
EMBL:DAAA02006406 EMBL:DAAA02006407 IPI:IPI00826704
RefSeq:XP_001252332.2 RefSeq:XP_002685753.2 UniGene:Bt.109560
Ensembl:ENSBTAT00000061408 GeneID:784123 KEGG:bta:784123
Uniprot:E1BP16
Length = 901
Score = 159 (61.0 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 25/43 (58%), Positives = 39/43 (90%)
Query: 16 QKVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAE 58
+KVDM+KV L+++KPWIT+++T++LG EDDVV+ F++NQLE +
Sbjct: 36 KKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVK 78
Score = 42 (19.8 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 148 PIPTPDGADKTYSPKITKLANDISSLTLLECADLSSLLK 186
P P P+ +KT P++ + + + ++ E S +LK
Sbjct: 210 PSPAPEKKEKT--PELPEPSVKVKEPSVQEATSTSDILK 246
Score = 40 (19.1 bits), Expect = 7.0e-10, Sum P(2) = 7.0e-10
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 115 RTYYSKIYLTCKPTKVSAQTATEAVSSSSEQPFPIPTP 152
RT S++ ++ P + S + + E P P P P
Sbjct: 420 RTRKSRVSVS--PGRTSGKVTKHKGTEKRESPSPAPKP 455
Score = 37 (18.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 127 PTKVSAQTATEAVSSSSEQPFP 148
P V+A T T A +P P
Sbjct: 844 PAAVAAPTTTSAQEEPEAEPEP 865
>UNIPROTKB|Q8IYB3 [details] [associations]
symbol:SRRM1 "Serine/arginine repetitive matrix protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] Reactome:REACT_71 InterPro:IPR002483
Pfam:PF01480 PROSITE:PS51025 SMART:SM00311 EMBL:AF048977
GO:GO:0005829 GO:GO:0005654 GO:GO:0003677 GO:GO:0016607
Reactome:REACT_1675 GO:GO:0003723 TCDB:3.A.18.1.1 GO:GO:0006406
GO:GO:0016363 GO:GO:0000398 GO:GO:0071013 Reactome:REACT_1788
Gene3D:1.20.1390.10 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
EMBL:AL445686 SUPFAM:SSF101233 CTD:10250 HOVERGEN:HBG054044
KO:K13171 EMBL:AF419855 EMBL:AL445648 EMBL:BC036187 IPI:IPI00328293
IPI:IPI00647720 RefSeq:NP_005830.2 UniGene:Hs.18192 PDB:1MP1
PDBsum:1MP1 ProteinModelPortal:Q8IYB3 SMR:Q8IYB3 IntAct:Q8IYB3
MINT:MINT-1683977 STRING:Q8IYB3 PhosphoSite:Q8IYB3 DMDM:83305833
PaxDb:Q8IYB3 PRIDE:Q8IYB3 Ensembl:ENST00000323848 GeneID:10250
KEGG:hsa:10250 UCSC:uc001bjm.3 GeneCards:GC01P024958
H-InvDB:HIX0023530 H-InvDB:HIX0160039 HGNC:HGNC:16638 HPA:HPA049941
MIM:605975 neXtProt:NX_Q8IYB3 PharmGKB:PA38177 eggNOG:NOG242213
HOGENOM:HOG000231139 OrthoDB:EOG4DV5N4 PhylomeDB:Q8IYB3
ChiTaRS:SRRM1 EvolutionaryTrace:Q8IYB3 GenomeRNAi:10250
NextBio:38838 PMAP-CutDB:Q8IYB3 ArrayExpress:Q8IYB3 Bgee:Q8IYB3
CleanEx:HS_SRRM1 Genevestigator:Q8IYB3 GermOnline:ENSG00000133226
Uniprot:Q8IYB3
Length = 904
Score = 159 (61.0 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 25/43 (58%), Positives = 39/43 (90%)
Query: 16 QKVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAE 58
+KVDM+KV L+++KPWIT+++T++LG EDDVV+ F++NQLE +
Sbjct: 36 KKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVK 78
Score = 42 (19.8 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 148 PIPTPDGADKTYSPKITKLANDISSLTLLECADLSSLLK 186
P P P+ +KT P++ + + + ++ E S +LK
Sbjct: 210 PSPAPEKKEKT--PELPEPSVKVKEPSVQEATSTSDILK 246
Score = 41 (19.5 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 129 KVSAQTATEAVSSSSEQPFPIPTPDGADKTYSPK 162
KV + EA S+S P P P K SP+
Sbjct: 229 KVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPE 262
Score = 40 (19.1 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 115 RTYYSKIYLTCKPTKVSAQTATEAVSSSSEQPFPIPTP 152
RT S++ ++ P + S + + E P P P P
Sbjct: 422 RTRKSRVSVS--PGRTSGKVTKHKGTEKRESPSPAPKP 457
>UNIPROTKB|A9Z1X7 [details] [associations]
symbol:SRRM1 "Serine/arginine repetitive matrix protein 1"
species:9606 "Homo sapiens" [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR002483 Pfam:PF01480 PROSITE:PS51025
SMART:SM00311 GO:GO:0006397 Gene3D:1.20.1390.10 EMBL:AL445686
SUPFAM:SSF101233 HOVERGEN:HBG054044 EMBL:AL445648 IPI:IPI00328293
UniGene:Hs.18192 HGNC:HGNC:16638 OrthoDB:EOG4DV5N4 ChiTaRS:SRRM1
SMR:A9Z1X7 STRING:A9Z1X7 Ensembl:ENST00000374389 Uniprot:A9Z1X7
Length = 913
Score = 159 (61.0 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 25/43 (58%), Positives = 39/43 (90%)
Query: 16 QKVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAE 58
+KVDM+KV L+++KPWIT+++T++LG EDDVV+ F++NQLE +
Sbjct: 36 KKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVK 78
Score = 42 (19.8 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 148 PIPTPDGADKTYSPKITKLANDISSLTLLECADLSSLLK 186
P P P+ +KT P++ + + + ++ E S +LK
Sbjct: 210 PSPAPEKKEKT--PELPEPSVKVKEPSVQEATSTSDILK 246
Score = 41 (19.5 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 129 KVSAQTATEAVSSSSEQPFPIPTPDGADKTYSPK 162
KV + EA S+S P P P K SP+
Sbjct: 229 KVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPE 262
Score = 40 (19.1 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 115 RTYYSKIYLTCKPTKVSAQTATEAVSSSSEQPFPIPTP 152
RT S++ ++ P + S + + E P P P P
Sbjct: 417 RTRKSRVSVS--PGRTSGKVTKHKGTEKRESPSPAPKP 452
>UNIPROTKB|E9PCT1 [details] [associations]
symbol:SRRM1 "Serine/arginine repetitive matrix protein 1"
species:9606 "Homo sapiens" [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR002483 Pfam:PF01480 PROSITE:PS51025
SMART:SM00311 GO:GO:0006397 Gene3D:1.20.1390.10 EMBL:AL445686
SUPFAM:SSF101233 EMBL:AL445648 IPI:IPI00328293 HGNC:HGNC:16638
ChiTaRS:SRRM1 ProteinModelPortal:E9PCT1 SMR:E9PCT1 PRIDE:E9PCT1
Ensembl:ENST00000447431 UCSC:uc009vrh.1 OMA:ILKAPKP
ArrayExpress:E9PCT1 Bgee:E9PCT1 Uniprot:E9PCT1
Length = 916
Score = 159 (61.0 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 25/43 (58%), Positives = 39/43 (90%)
Query: 16 QKVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAE 58
+KVDM+KV L+++KPWIT+++T++LG EDDVV+ F++NQLE +
Sbjct: 36 KKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVK 78
Score = 42 (19.8 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 148 PIPTPDGADKTYSPKITKLANDISSLTLLECADLSSLLK 186
P P P+ +KT P++ + + + ++ E S +LK
Sbjct: 210 PSPAPEKKEKT--PELPEPSVKVKEPSVQEATSTSDILK 246
Score = 41 (19.5 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 129 KVSAQTATEAVSSSSEQPFPIPTPDGADKTYSPK 162
KV + EA S+S P P P K SP+
Sbjct: 229 KVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPE 262
Score = 39 (18.8 bits), Expect = 9.3e-10, Sum P(2) = 9.3e-10
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 115 RTYYSKIYLTCKPTKVSAQTATEAVSSSSEQPFPIPTP 152
RT S++ ++ T V+ TE E P P P P
Sbjct: 422 RTRKSRVSVSPGRTSVTKHKGTE----KRESPSPAPKP 455
>UNIPROTKB|E1BYZ7 [details] [associations]
symbol:E1BYZ7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR002483 Pfam:PF01480 PROSITE:PS51025 SMART:SM00311
GO:GO:0006397 Gene3D:1.20.1390.10 SUPFAM:SSF101233
GeneTree:ENSGT00650000093061 EMBL:AADN02043953 EMBL:AADN02043954
EMBL:AADN02043955 EMBL:AADN02043956 EMBL:AADN02043957
EMBL:AADN02043958 EMBL:AADN02043959 EMBL:AADN02043960
EMBL:AADN02043961 EMBL:AADN02043962 IPI:IPI00819690
Ensembl:ENSGALT00000041106 ArrayExpress:E1BYZ7 Uniprot:E1BYZ7
Length = 428
Score = 159 (61.0 bits), Expect = 8.0e-10, P = 8.0e-10
Identities = 25/43 (58%), Positives = 39/43 (90%)
Query: 16 QKVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAE 58
+KVDM+KV L+++KPWIT+++T++LG EDDVV+ F++NQLE +
Sbjct: 36 KKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVK 78
>RGD|1311258 [details] [associations]
symbol:Srrm1 "serine/arginine repetitive matrix 1" species:10116
"Rattus norvegicus" [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
InterPro:IPR002483 Pfam:PF01480 PROSITE:PS51025 SMART:SM00311
RGD:1311258 GO:GO:0006397 Gene3D:1.20.1390.10 SUPFAM:SSF101233
IPI:IPI00947844 Ensembl:ENSRNOT00000065511 ArrayExpress:D4A3Q5
Uniprot:D4A3Q5
Length = 922
Score = 159 (61.0 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 25/43 (58%), Positives = 39/43 (90%)
Query: 16 QKVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAE 58
+KVDM+KV L+++KPWIT+++T++LG EDDVV+ F++NQLE +
Sbjct: 36 KKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVK 78
Score = 39 (18.8 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 148 PIPTPDGADKTYSPKITKLANDISSLTLLECADLSSLLK 186
P P P+ +K SP++ + + + ++ E S +LK
Sbjct: 210 PSPAPEKKEK--SPELPEPSVRMKDSSVQEATSTSDILK 246
Score = 38 (18.4 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 120 KIYLTCKPTKVSAQTATEAVSSSSEQPFPIPTP 152
K ++ P + S + + E P P P P
Sbjct: 423 KSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKP 455
>UNIPROTKB|D4A1M8 [details] [associations]
symbol:Srrm1 "Protein Srrm1" species:10116 "Rattus
norvegicus" [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR002483 Pfam:PF01480 PROSITE:PS51025 SMART:SM00311
RGD:1311258 GO:GO:0006397 GO:GO:0071013 Gene3D:1.20.1390.10
SUPFAM:SSF101233 OrthoDB:EOG4DV5N4 IPI:IPI00779470
Ensembl:ENSRNOT00000056107 ArrayExpress:D4A1M8 Uniprot:D4A1M8
Length = 946
Score = 159 (61.0 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 25/43 (58%), Positives = 39/43 (90%)
Query: 16 QKVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAE 58
+KVDM+KV L+++KPWIT+++T++LG EDDVV+ F++NQLE +
Sbjct: 36 KKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVK 78
Score = 39 (18.8 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 148 PIPTPDGADKTYSPKITKLANDISSLTLLECADLSSLLK 186
P P P+ +K SP++ + + + ++ E S +LK
Sbjct: 210 PSPAPEKKEK--SPELPEPSVRMKDSSVQEATSTSDILK 246
Score = 38 (18.4 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 120 KIYLTCKPTKVSAQTATEAVSSSSEQPFPIPTP 152
K ++ P + S + + E P P P P
Sbjct: 423 KSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKP 455
>UNIPROTKB|I3LSY1 [details] [associations]
symbol:MRPL12 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006390 "transcription from
mitochondrial promoter" evidence=IEA] [GO:0005762 "mitochondrial
large ribosomal subunit" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR008932 GO:GO:0045893 GO:GO:0006412
GO:GO:0005762 GO:GO:0003735 InterPro:IPR015607
PANTHER:PTHR11809:SF2 SUPFAM:SSF48300 GeneTree:ENSGT00390000000190
GO:GO:0006390 Ensembl:ENSSSCT00000029390 OMA:RCSSHRK Uniprot:I3LSY1
Length = 84
Score = 140 (54.3 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 30/53 (56%), Positives = 35/53 (66%)
Query: 153 DGADKTYSPKITKLANDISSLTLLECADLSSLLKKQLNLPDAPMMAMGAFAQG 205
D A K Y PKI +L DI+SLTLLE +DL+ LLKK L + D M MGA A G
Sbjct: 18 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGFMPMGAVAPG 70
>UNIPROTKB|E1BQL1 [details] [associations]
symbol:E1BQL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR002483 Pfam:PF01480 PROSITE:PS51025 SMART:SM00311
GO:GO:0006397 Gene3D:1.20.1390.10 SUPFAM:SSF101233
GeneTree:ENSGT00650000093061 EMBL:AADN02043953 EMBL:AADN02043954
EMBL:AADN02043955 EMBL:AADN02043956 EMBL:AADN02043957
EMBL:AADN02043958 EMBL:AADN02043959 EMBL:AADN02043960
EMBL:AADN02043961 EMBL:AADN02043962 IPI:IPI00682553
Ensembl:ENSGALT00000001960 ArrayExpress:E1BQL1 Uniprot:E1BQL1
Length = 553
Score = 159 (61.0 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 25/43 (58%), Positives = 39/43 (90%)
Query: 16 QKVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAE 58
+KVDM+KV L+++KPWIT+++T++LG EDDVV+ F++NQLE +
Sbjct: 36 KKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVK 78
>UNIPROTKB|Q5ZMJ9 [details] [associations]
symbol:SRRM1 "Serine/arginine repetitive matrix protein 1"
species:9031 "Gallus gallus" [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR002483 Pfam:PF01480
PROSITE:PS51025 SMART:SM00311 GO:GO:0005634 GO:GO:0008380
GO:GO:0006397 Gene3D:1.20.1390.10 SUPFAM:SSF101233 EMBL:AJ719385
IPI:IPI00573813 RefSeq:NP_001026665.1 UniGene:Gga.4399
ProteinModelPortal:Q5ZMJ9 SMR:Q5ZMJ9 STRING:Q5ZMJ9 PRIDE:Q5ZMJ9
GeneID:428216 KEGG:gga:428216 CTD:10250 eggNOG:NOG330576
HOVERGEN:HBG054044 InParanoid:Q5ZMJ9 KO:K13171 NextBio:20829263
Uniprot:Q5ZMJ9
Length = 888
Score = 159 (61.0 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 25/43 (58%), Positives = 39/43 (90%)
Query: 16 QKVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAE 58
+KVDM+KV L+++KPWIT+++T++LG EDDVV+ F++NQLE +
Sbjct: 36 KKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVK 78
>UNIPROTKB|E1BQL2 [details] [associations]
symbol:E1BQL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
InterPro:IPR002483 Pfam:PF01480 PROSITE:PS51025 SMART:SM00311
GO:GO:0006397 GO:GO:0071013 Gene3D:1.20.1390.10 SUPFAM:SSF101233
IPI:IPI00573813 GeneTree:ENSGT00650000093061 EMBL:AADN02043953
EMBL:AADN02043954 EMBL:AADN02043955 EMBL:AADN02043956
EMBL:AADN02043957 EMBL:AADN02043958 EMBL:AADN02043959
EMBL:AADN02043960 EMBL:AADN02043961 EMBL:AADN02043962
Ensembl:ENSGALT00000001959 ArrayExpress:E1BQL2 Uniprot:E1BQL2
Length = 940
Score = 159 (61.0 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 25/43 (58%), Positives = 39/43 (90%)
Query: 16 QKVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAE 58
+KVDM+KV L+++KPWIT+++T++LG EDDVV+ F++NQLE +
Sbjct: 36 KKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVK 78
>UNIPROTKB|E1C3B6 [details] [associations]
symbol:MRPL12 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005762
"mitochondrial large ribosomal subunit" evidence=IEA] [GO:0006390
"transcription from mitochondrial promoter" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR008932 InterPro:IPR013823 Pfam:PF00542
ProDom:PD001326 GO:GO:0045893 GO:GO:0006412 GO:GO:0005762
GO:GO:0003735 Gene3D:3.30.1390.10 InterPro:IPR014719
SUPFAM:SSF54736 InterPro:IPR015607 PANTHER:PTHR11809:SF2
SUPFAM:SSF48300 GeneTree:ENSGT00390000000190 GO:GO:0006390
OMA:MYCTRYC EMBL:AADN02053585 IPI:IPI00583893
Ensembl:ENSGALT00000011655 NextBio:20919270 Uniprot:E1C3B6
Length = 194
Score = 138 (53.6 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 32/72 (44%), Positives = 46/72 (63%)
Query: 132 AQTATEAVSSSSEQPFPIPTPDGADKTYSPKITKLANDISSLTLLECADLSSLLKKQLNL 191
A+ +EA++ + P+ T A K YSPK+ +L DI+ LTLLE ADL++LLK+ L +
Sbjct: 34 ARRRSEALAGEALAGAPLDT---AAKEYSPKVRQLVRDIAGLTLLEVADLNALLKETLKI 90
Query: 192 PDAPMMAMGAFA 203
PD +M GA A
Sbjct: 91 PDVGVMPAGAAA 102
>WB|WBGene00012361 [details] [associations]
symbol:mrpl-12 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] InterPro:IPR008932 InterPro:IPR013823 Pfam:PF00542
ProDom:PD001326 GO:GO:0008340 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1390.10 InterPro:IPR014719 SUPFAM:SSF54736
eggNOG:COG0222 HOGENOM:HOG000248814 InterPro:IPR015607
PANTHER:PTHR11809:SF2 SUPFAM:SSF48300 GeneTree:ENSGT00390000000190
OMA:GVAKPPN EMBL:Z93785 PIR:T26299 RefSeq:NP_499360.1 HSSP:P02392
ProteinModelPortal:O18180 SMR:O18180 DIP:DIP-25893N IntAct:O18180
MINT:MINT-227711 STRING:O18180 PaxDb:O18180 EnsemblMetazoa:W09D10.3
GeneID:176495 KEGG:cel:CELE_W09D10.3 UCSC:W09D10.3 CTD:176495
WormBase:W09D10.3 InParanoid:O18180 NextBio:892818 Uniprot:O18180
Length = 173
Score = 129 (50.5 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 124 TCKP-TKVSAQTA--TEAVSSSSEQPFPIPTPDGADKTYSPKITKLANDISSLTLLECAD 180
T +P +KV +A ++A + P P P D+ S K++ L +I++L+LL+ +D
Sbjct: 5 TLRPISKVLRSSAKYSQAAGLPLNEGSPAPLPS-EDRAISAKVSSLVEEIANLSLLDVSD 63
Query: 181 LSSLLKKQLNLPDAPMMAMGAFA 203
L+ LKK+LN+PD P+MA A A
Sbjct: 64 LNWALKKRLNIPDQPLMAAAAAA 86
>UNIPROTKB|O18180 [details] [associations]
symbol:mrpl-12 "Protein MRPL-12" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR008932 InterPro:IPR013823 Pfam:PF00542
ProDom:PD001326 GO:GO:0008340 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1390.10 InterPro:IPR014719 SUPFAM:SSF54736
eggNOG:COG0222 HOGENOM:HOG000248814 InterPro:IPR015607
PANTHER:PTHR11809:SF2 SUPFAM:SSF48300 GeneTree:ENSGT00390000000190
OMA:GVAKPPN EMBL:Z93785 PIR:T26299 RefSeq:NP_499360.1 HSSP:P02392
ProteinModelPortal:O18180 SMR:O18180 DIP:DIP-25893N IntAct:O18180
MINT:MINT-227711 STRING:O18180 PaxDb:O18180 EnsemblMetazoa:W09D10.3
GeneID:176495 KEGG:cel:CELE_W09D10.3 UCSC:W09D10.3 CTD:176495
WormBase:W09D10.3 InParanoid:O18180 NextBio:892818 Uniprot:O18180
Length = 173
Score = 129 (50.5 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 124 TCKP-TKVSAQTA--TEAVSSSSEQPFPIPTPDGADKTYSPKITKLANDISSLTLLECAD 180
T +P +KV +A ++A + P P P D+ S K++ L +I++L+LL+ +D
Sbjct: 5 TLRPISKVLRSSAKYSQAAGLPLNEGSPAPLPS-EDRAISAKVSSLVEEIANLSLLDVSD 63
Query: 181 LSSLLKKQLNLPDAPMMAMGAFA 203
L+ LKK+LN+PD P+MA A A
Sbjct: 64 LNWALKKRLNIPDQPLMAAAAAA 86
>UNIPROTKB|P52827 [details] [associations]
symbol:MRPL12 "39S ribosomal protein L12, mitochondrial"
species:10034 "Cricetus cricetus" [GO:0005762 "mitochondrial large
ribosomal subunit" evidence=ISS] InterPro:IPR008932
InterPro:IPR013823 Pfam:PF00542 ProDom:PD001326 HAMAP:MF_00368
GO:GO:0006412 GO:GO:0005762 GO:GO:0003735 Gene3D:3.30.1390.10
InterPro:IPR014719 SUPFAM:SSF54736 InterPro:IPR015607
PANTHER:PTHR11809:SF2 SUPFAM:SSF48300 HOVERGEN:HBG001832
EMBL:X79864 ProteinModelPortal:P52827 PRIDE:P52827 Uniprot:P52827
Length = 203
Score = 137 (53.3 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 35/80 (43%), Positives = 45/80 (56%)
Query: 129 KVSAQTATEAVSSSSEQPFPI--PTP-DGADKTYSPKITKLANDISSLTLLECADLSSLL 185
+V A +SSSS++ P D A K Y PKI +L DI+SLTLLE +DL+ LL
Sbjct: 29 QVPGVCAARQLSSSSQRRSEALAGAPLDNAPKEYPPKIQQLVQDIASLTLLEISDLNELL 88
Query: 186 KKQLNLPDAPMMAMGAFAQG 205
KK L + D +M MG G
Sbjct: 89 KKTLKIQDVGLMPMGGMMPG 108
>MGI|MGI:1926273 [details] [associations]
symbol:Mrpl12 "mitochondrial ribosomal protein L12"
species:10090 "Mus musculus" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=ISO;IDA] [GO:0005761
"mitochondrial ribosome" evidence=ISS] [GO:0005762 "mitochondrial
large ribosomal subunit" evidence=ISO] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006390 "transcription from mitochondrial
promoter" evidence=ISO] [GO:0006412 "translation" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
InterPro:IPR008932 InterPro:IPR013823 Pfam:PF00542 ProDom:PD001326
HAMAP:MF_00368 MGI:MGI:1926273 GO:GO:0045893 GO:GO:0006412
GO:GO:0005762 GO:GO:0003735 EMBL:AL669855 Gene3D:3.30.1390.10
InterPro:IPR014719 SUPFAM:SSF54736 HOGENOM:HOG000248814
InterPro:IPR015607 PANTHER:PTHR11809:SF2 SUPFAM:SSF48300
GeneTree:ENSGT00390000000190 GO:GO:0006390 CTD:6182
eggNOG:NOG312691 HOVERGEN:HBG001832 OrthoDB:EOG4R5044 EMBL:AK005328
EMBL:AK028168 EMBL:AK134816 EMBL:AK166969 EMBL:AK168337
EMBL:BC005712 EMBL:BC019565 IPI:IPI00118963 RefSeq:NP_081480.2
UniGene:Mm.133851 ProteinModelPortal:Q9DB15 SMR:Q9DB15
IntAct:Q9DB15 STRING:Q9DB15 PhosphoSite:Q9DB15 PaxDb:Q9DB15
PRIDE:Q9DB15 Ensembl:ENSMUST00000043627 GeneID:56282 KEGG:mmu:56282
UCSC:uc007mta.1 InParanoid:B1ATZ3 OMA:MYCTRYC ChiTaRS:MRPL12
NextBio:312184 Bgee:Q9DB15 CleanEx:MM_MRPL12 Genevestigator:Q9DB15
GermOnline:ENSMUSG00000039640 Uniprot:Q9DB15
Length = 201
Score = 136 (52.9 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 33/79 (41%), Positives = 43/79 (54%)
Query: 127 PTKVSAQTATEAVSSSSEQPFPIPTPDGADKTYSPKITKLANDISSLTLLECADLSSLLK 186
P+ +A+ + SE P D A K Y PKI +L DI+SLTLLE +DL+ LLK
Sbjct: 30 PSVCAARQLRSSSHRRSEALAGAPL-DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLK 88
Query: 187 KQLNLPDAPMMAMGAFAQG 205
K L + D +M MG G
Sbjct: 89 KTLKIQDVGLMPMGGMVPG 107
>UNIPROTKB|Q7YR75 [details] [associations]
symbol:MRPL12 "39S ribosomal protein L12, mitochondrial"
species:9913 "Bos taurus" [GO:0005762 "mitochondrial large
ribosomal subunit" evidence=ISS] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR008932 InterPro:IPR013823 Pfam:PF00542
ProDom:PD001326 HAMAP:MF_00368 GO:GO:0006412 GO:GO:0005762
GO:GO:0003735 Gene3D:3.30.1390.10 InterPro:IPR014719
SUPFAM:SSF54736 HOGENOM:HOG000248814 InterPro:IPR015607
PANTHER:PTHR11809:SF2 SUPFAM:SSF48300 PDB:2FTC PDBsum:2FTC
EMBL:AB116379 EMBL:BT020735 EMBL:BT020755 EMBL:BT020982
EMBL:BT030597 EMBL:BC134767 IPI:IPI00691477 RefSeq:NP_963900.1
UniGene:Bt.8177 ProteinModelPortal:Q7YR75 STRING:Q7YR75
PRIDE:Q7YR75 GeneID:399560 KEGG:bta:399560 CTD:6182
eggNOG:NOG312691 HOVERGEN:HBG001832 OrthoDB:EOG4R5044
EvolutionaryTrace:Q7YR75 NextBio:20816606 Uniprot:Q7YR75
Length = 198
Score = 135 (52.6 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 28/53 (52%), Positives = 34/53 (64%)
Query: 153 DGADKTYSPKITKLANDISSLTLLECADLSSLLKKQLNLPDAPMMAMGAFAQG 205
D A K Y PKI +L DI+SLTLLE +DL+ LLKK L + D +M MG G
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPG 106
>WB|WBGene00004706 [details] [associations]
symbol:rsr-1 species:6239 "Caenorhabditis elegans"
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040026
"positive regulation of vulval development" evidence=IMP]
InterPro:IPR002483 Pfam:PF01480 PROSITE:PS51025 SMART:SM00311
GO:GO:0009792 GO:GO:0040010 GO:GO:0002119 GO:GO:0006397
GO:GO:0040011 GO:GO:0000003 GO:GO:0040026 Gene3D:1.20.1390.10
GO:GO:0001703 SUPFAM:SSF101233 KO:K13171 eggNOG:NOG242213
GeneTree:ENSGT00650000093061 EMBL:Z81518 PIR:H87917 PIR:T21503
RefSeq:NP_492875.2 ProteinModelPortal:O62185 SMR:O62185
STRING:O62185 PaxDb:O62185 EnsemblMetazoa:F28D9.1 GeneID:173013
KEGG:cel:CELE_F28D9.1 UCSC:F28D9.1 CTD:173013 WormBase:F28D9.1
InParanoid:O62185 OMA:WNLLIEA NextBio:877919 Uniprot:O62185
Length = 601
Score = 144 (55.7 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 21/51 (41%), Positives = 40/51 (78%)
Query: 11 KPQVVQKVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAEKVS 61
+PQ+ QK+D+ + +D++KPWIT ++ +LGMEDDVVV ++ +Q++ + ++
Sbjct: 31 EPQLEQKIDLNRCNMDVIKPWITARVNDILGMEDDVVVEYILSQIDDKNLN 81
>TAIR|locus:2043172 [details] [associations]
symbol:AT2G29210 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0009294 "DNA mediated
transformation" evidence=RCA] InterPro:IPR002483 Pfam:PF01480
PROSITE:PS51025 SMART:SM00311 EMBL:CP002685 GO:GO:0008380
GO:GO:0006397 Gene3D:1.20.1390.10 SUPFAM:SSF101233 KO:K13171
eggNOG:NOG242213 EMBL:AY125501 EMBL:BT000633 IPI:IPI00546855
RefSeq:NP_180484.2 UniGene:At.25482 SMR:Q8L7W3 IntAct:Q8L7W3
STRING:Q8L7W3 EnsemblPlants:AT2G29210.1 GeneID:817470
KEGG:ath:AT2G29210 TAIR:At2g29210 HOGENOM:HOG000148632
InParanoid:Q8L7W3 OMA:HAGEESP ProtClustDB:CLSN2721845
Genevestigator:Q8L7W3 Uniprot:Q8L7W3
Length = 878
Score = 145 (56.1 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 23/50 (46%), Positives = 40/50 (80%)
Query: 12 PQVVQKVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAEKVS 61
P++ VD+TKVK+D++KPWI ++T+LLG+ED+V++ F+Y L+ + V+
Sbjct: 32 PELENLVDITKVKMDVMKPWIATRVTELLGIEDEVLINFIYGLLDGKVVN 81
>UNIPROTKB|A5PJ86 [details] [associations]
symbol:MRPL12 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR008932 InterPro:IPR013823
Pfam:PF00542 ProDom:PD001326 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:3.30.1390.10 InterPro:IPR014719
SUPFAM:SSF54736 GeneTree:ENSGT00670000098021 HOGENOM:HOG000248814
InterPro:IPR015607 PANTHER:PTHR11809:SF2 SUPFAM:SSF48300
IPI:IPI00691477 UniGene:Bt.8177 HOVERGEN:HBG001832
EMBL:DAAA02049420 EMBL:BC142005 STRING:A5PJ86
Ensembl:ENSBTAT00000053193 InParanoid:A5PJ86 Uniprot:A5PJ86
Length = 226
Score = 135 (52.6 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 28/53 (52%), Positives = 34/53 (64%)
Query: 153 DGADKTYSPKITKLANDISSLTLLECADLSSLLKKQLNLPDAPMMAMGAFAQG 205
D A K Y PKI +L DI+SLTLLE +DL+ LLKK L + D +M MG G
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPG 106
>UNIPROTKB|E2QVI3 [details] [associations]
symbol:MRPL12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR008932
InterPro:IPR013823 Pfam:PF00542 ProDom:PD001326 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:3.30.1390.10 InterPro:IPR014719
SUPFAM:SSF54736 InterPro:IPR015607 PANTHER:PTHR11809:SF2
SUPFAM:SSF48300 CTD:6182 RefSeq:XP_850016.1
Ensembl:ENSCAFT00000009364 GeneID:608030 KEGG:cfa:608030
NextBio:20893711 Uniprot:E2QVI3
Length = 198
Score = 130 (50.8 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 27/48 (56%), Positives = 33/48 (68%)
Query: 153 DGADKTYSPKITKLANDISSLTLLECADLSSLLKKQLNLPDAPMMAMG 200
D A K Y PKI +L DI+SLTLLE +DL+ LLKK L + D +M MG
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMG 101
>UNIPROTKB|P52815 [details] [associations]
symbol:MRPL12 "39S ribosomal protein L12, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005762 "mitochondrial large ribosomal subunit" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR008932 InterPro:IPR013823
Pfam:PF00542 ProDom:PD001326 HAMAP:MF_00368 GO:GO:0045893
GO:GO:0006412 GO:GO:0003723 GO:GO:0005762 GO:GO:0003735
Gene3D:3.30.1390.10 InterPro:IPR014719 SUPFAM:SSF54736
HOGENOM:HOG000248814 InterPro:IPR015607 PANTHER:PTHR11809:SF2
SUPFAM:SSF48300 GO:GO:0006390 CTD:6182 eggNOG:NOG312691
HOVERGEN:HBG001832 OrthoDB:EOG4R5044 EMBL:X79865 EMBL:AF059736
EMBL:BC002344 EMBL:BC007497 EMBL:AF105278 IPI:IPI01015060
RefSeq:NP_002940.2 UniGene:Hs.109059 ProteinModelPortal:P52815
SMR:P52815 DIP:DIP-50865N IntAct:P52815 MINT:MINT-1150069
STRING:P52815 PhosphoSite:P52815 DMDM:20981709
DOSAC-COBS-2DPAGE:P52815 SWISS-2DPAGE:P52815 PaxDb:P52815
PeptideAtlas:P52815 PRIDE:P52815 Ensembl:ENST00000333676
GeneID:6182 KEGG:hsa:6182 UCSC:uc002kbh.2 GeneCards:GC17P079670
HGNC:HGNC:10378 HPA:HPA022853 HPA:HPA023043 MIM:602375
neXtProt:NX_P52815 PharmGKB:PA30941 InParanoid:P52815
PhylomeDB:P52815 GenomeRNAi:6182 NextBio:24005 ArrayExpress:P52815
Bgee:P52815 CleanEx:HS_MRPL12 Genevestigator:P52815
GermOnline:ENSG00000183093 Uniprot:P52815
Length = 198
Score = 130 (50.8 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 153 DGADKTYSPKITKLANDISSLTLLECADLSSLLKKQLNLPDAPMMAMGAFAQG 205
D A K Y PKI +L DI+SLTLLE +DL+ LLKK L + D ++ MG G
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSG 106
>RGD|1588559 [details] [associations]
symbol:Mrpl12 "mitochondrial ribosomal protein L12"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0005762 "mitochondrial large ribosomal subunit"
evidence=IEA;ISO] [GO:0006390 "transcription from mitochondrial
promoter" evidence=IEA;ISO] [GO:0006412 "translation" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA;ISO] InterPro:IPR008932 InterPro:IPR013823
Pfam:PF00542 ProDom:PD001326 RGD:1588559 GO:GO:0045893
GO:GO:0006412 GO:GO:0005762 GO:GO:0003735 Gene3D:3.30.1390.10
InterPro:IPR014719 SUPFAM:SSF54736 InterPro:IPR015607
PANTHER:PTHR11809:SF2 SUPFAM:SSF48300 GeneTree:ENSGT00390000000190
GO:GO:0006390 CTD:6182 OrthoDB:EOG4R5044 IPI:IPI00203773
RefSeq:NP_001025071.1 Ensembl:ENSRNOT00000054965 GeneID:303746
KEGG:rno:303746 OMA:DNTPKEY Uniprot:D3ZXF9
Length = 276
Score = 135 (52.6 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 28/53 (52%), Positives = 34/53 (64%)
Query: 153 DGADKTYSPKITKLANDISSLTLLECADLSSLLKKQLNLPDAPMMAMGAFAQG 205
D A K Y PKI +L DI+SLTLLE +DL+ LLKK L + D +M MG G
Sbjct: 130 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPG 182
>ASPGD|ASPL0000037847 [details] [associations]
symbol:AN10349 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR002483 Pfam:PF01480 PROSITE:PS51025
GO:GO:0006397 EMBL:BN001306 Gene3D:1.20.1390.10 SUPFAM:SSF101233
EnsemblFungi:CADANIAT00010159 HOGENOM:HOG000195337 OMA:ANQTASH
Uniprot:C8VJ53
Length = 472
Score = 137 (53.3 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 25/52 (48%), Positives = 36/52 (69%)
Query: 12 PQVVQKVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAEKVSTI 63
P+ QKVDMTKV ++++K WI KI+++LG EDDVV+ +N LE + I
Sbjct: 17 PEFNQKVDMTKVNIEVMKKWIAGKISEILGNEDDVVIELCFNLLEGSRFPDI 68
>UNIPROTKB|H9KUU7 [details] [associations]
symbol:LOC100848134 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0015291 "secondary active transmembrane
transporter activity" evidence=IEA] [GO:0005743 "mitochondrial
inner membrane" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0006839
"mitochondrial transport" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR002030 InterPro:IPR008932 InterPro:IPR013823
Pfam:PF00542 PRINTS:PR00784 ProDom:PD001326 Pfam:PF00153
GO:GO:0016021 GO:GO:0005743 GO:GO:0006412 GO:GO:0005840
GO:GO:0015291 GO:GO:0003735 Gene3D:1.50.40.10 InterPro:IPR018108
InterPro:IPR023395 SUPFAM:SSF103506 PROSITE:PS50920 GO:GO:0006839
Gene3D:3.30.1390.10 InterPro:IPR014719 SUPFAM:SSF54736
GeneTree:ENSGT00670000098021 SUPFAM:SSF48300 EMBL:DAAA02049420
Ensembl:ENSBTAT00000000534 Uniprot:H9KUU7
Length = 442
Score = 135 (52.6 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/53 (52%), Positives = 34/53 (64%)
Query: 153 DGADKTYSPKITKLANDISSLTLLECADLSSLLKKQLNLPDAPMMAMGAFAQG 205
D A K Y PKI +L DI+SLTLLE +DL+ LLKK L + D +M MG G
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPG 106
>POMBASE|SPCC825.05c [details] [associations]
symbol:SPCC825.05c "splicing coactivator SRRM1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] InterPro:IPR002483 Pfam:PF01480 PROSITE:PS51025
PomBase:SPCC825.05c EMBL:CU329672 GO:GO:0005681 GO:GO:0003723
Gene3D:1.20.1390.10 GO:GO:0045292 SUPFAM:SSF101233 eggNOG:NOG330576
KO:K13171 PIR:T41626 RefSeq:NP_588055.1 ProteinModelPortal:Q9USH5
EnsemblFungi:SPCC825.05c.1 GeneID:2539459 KEGG:spo:SPCC825.05c
HOGENOM:HOG000206490 OMA:DSRERNG OrthoDB:EOG4FXVJ7 NextBio:20800621
Uniprot:Q9USH5
Length = 301
Score = 131 (51.2 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 17 KVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLE 56
KVDM KV +++LKPWI ++ +L+G ED+VV+ FVY LE
Sbjct: 36 KVDMKKVNIEVLKPWIATRLNELIGFEDEVVINFVYGMLE 75
>UNIPROTKB|F6XRN5 [details] [associations]
symbol:MRPL12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0031966 "mitochondrial membrane" evidence=IEA] [GO:0006839
"mitochondrial transport" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR002030 InterPro:IPR008932 InterPro:IPR013823
Pfam:PF00542 PRINTS:PR00784 ProDom:PD001326 Pfam:PF00153
GO:GO:0016021 GO:GO:0031966 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:1.50.40.10 InterPro:IPR018108
InterPro:IPR023395 SUPFAM:SSF103506 PROSITE:PS50920 GO:GO:0006839
Gene3D:3.30.1390.10 InterPro:IPR014719 SUPFAM:SSF54736
GeneTree:ENSGT00670000098021 SUPFAM:SSF48300
Ensembl:ENSCAFT00000009364 EMBL:AAEX03006169 OMA:GGCATIL
Uniprot:F6XRN5
Length = 442
Score = 130 (50.8 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 27/48 (56%), Positives = 33/48 (68%)
Query: 153 DGADKTYSPKITKLANDISSLTLLECADLSSLLKKQLNLPDAPMMAMG 200
D A K Y PKI +L DI+SLTLLE +DL+ LLKK L + D +M MG
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMG 101
>UNIPROTKB|B4DLN1 [details] [associations]
symbol:SLC25A10 "Uncharacterized protein" species:9606
"Homo sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0006839 "mitochondrial transport"
evidence=IEA] [GO:0031966 "mitochondrial membrane" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] InterPro:IPR002030
InterPro:IPR008932 InterPro:IPR013823 Pfam:PF00542 PRINTS:PR00784
ProDom:PD001326 Pfam:PF00153 GO:GO:0016021 GO:GO:0005739
GO:GO:0005634 GO:GO:0031966 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:1.50.40.10 InterPro:IPR018108
InterPro:IPR023395 SUPFAM:SSF103506 PROSITE:PS50920 GO:GO:0006839
Gene3D:3.30.1390.10 InterPro:IPR014719 HGNC:HGNC:10980
ChiTaRS:SLC25A10 SUPFAM:SSF48300 EMBL:AC139530 EMBL:AK297076
IPI:IPI00005537 SMR:B4DLN1 STRING:B4DLN1 Ensembl:ENST00000541223
Ensembl:ENST00000571730 UCSC:uc010wut.2 Uniprot:B4DLN1
Length = 442
Score = 130 (50.8 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 153 DGADKTYSPKITKLANDISSLTLLECADLSSLLKKQLNLPDAPMMAMGAFAQG 205
D A K Y PKI +L DI+SLTLLE +DL+ LLKK L + D ++ MG G
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSG 106
>TAIR|locus:2115385 [details] [associations]
symbol:AT4G36420 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0015934 "large
ribosomal subunit" evidence=ISS] InterPro:IPR000206
InterPro:IPR008932 InterPro:IPR013823 Pfam:PF00542 ProDom:PD001326
HAMAP:MF_00368 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:AL161589 EMBL:Z99708
Gene3D:3.30.1390.10 InterPro:IPR014719 SUPFAM:SSF54736
eggNOG:COG0222 HOGENOM:HOG000248814 SUPFAM:SSF48300
InterPro:IPR015608 PANTHER:PTHR11809:SF6 TIGRFAMs:TIGR00855
OMA:TMDLTEI HSSP:P02392 EMBL:AF370294 EMBL:AY052308 EMBL:AY063041
IPI:IPI00520865 PIR:H85429 RefSeq:NP_195360.1 UniGene:At.4606
ProteinModelPortal:O23238 SMR:O23238 STRING:O23238 PaxDb:O23238
PRIDE:O23238 EnsemblPlants:AT4G36420.1 GeneID:829794
KEGG:ath:AT4G36420 TAIR:At4g36420 InParanoid:O23238
PhylomeDB:O23238 ProtClustDB:CLSN2915904 Genevestigator:O23238
Uniprot:O23238
Length = 179
Score = 113 (44.8 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 26/65 (40%), Positives = 43/65 (66%)
Query: 135 ATEAVSSSSEQPFPIPTPD-GADKTYSPKITKLANDISSLTLLECADLSSLLKKQLNLPD 193
+TE SSS Q F I + + T S ++K+ N++S+LTLLE DL+ +L+++LN+ +
Sbjct: 17 STET-RSSSVQLFTIQSRSYSSPATQSENVSKIVNELSNLTLLETMDLTEILRQKLNISE 75
Query: 194 APMMA 198
P+MA
Sbjct: 76 LPVMA 80
>ASPGD|ASPL0000042202 [details] [associations]
symbol:AN2057 species:162425 "Emericella nidulans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
[GO:0009060 "aerobic respiration" evidence=IEA] InterPro:IPR008932
InterPro:IPR013823 Pfam:PF00542 ProDom:PD001326 GO:GO:0005739
GO:GO:0006412 EMBL:BN001307 GO:GO:0005840 EMBL:AACD01000032
GO:GO:0003735 GO:GO:0009060 Gene3D:3.30.1390.10 InterPro:IPR014719
SUPFAM:SSF54736 eggNOG:COG0222 HOGENOM:HOG000248814
OrthoDB:EOG49CTJ7 InterPro:IPR015607 PANTHER:PTHR11809:SF2
SUPFAM:SSF48300 RefSeq:XP_659661.1 ProteinModelPortal:Q5BBM3
STRING:Q5BBM3 EnsemblFungi:CADANIAT00008726 GeneID:2875113
KEGG:ani:AN2057.2 OMA:RRLPADY Uniprot:Q5BBM3
Length = 184
Score = 111 (44.1 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 160 SPKITKLANDISSLTLLECADLSSLLKKQLNLPDAPM----MAMGAFAQG 205
+PKIT++ + IS L LLE ADL + LK +LN+PD P+ MA GA A G
Sbjct: 47 NPKITQIVDQISQLNLLETADLVASLKSRLNIPDLPVGGFAMAPGAGAPG 96
>SGD|S000003036 [details] [associations]
symbol:MNP1 "Protein associated with the mitochondrial
nucleoid" species:4932 "Saccharomyces cerevisiae" [GO:0042645
"mitochondrial nucleoid" evidence=IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA;ISS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0009060 "aerobic respiration" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR008932 InterPro:IPR013823 Pfam:PF00542 ProDom:PD001326
SGD:S000003036 HAMAP:MF_00368 EMBL:BK006941 GO:GO:0006412
GO:GO:0005840 GO:GO:0042645 GO:GO:0003735 GO:GO:0009060
Gene3D:3.30.1390.10 InterPro:IPR014719 SUPFAM:SSF54736
eggNOG:COG0222 HOGENOM:HOG000248814 OrthoDB:EOG49CTJ7
InterPro:IPR015607 PANTHER:PTHR11809:SF2 SUPFAM:SSF48300
EMBL:Z72591 PIR:S64075 RefSeq:NP_011447.1 ProteinModelPortal:P53163
SMR:P53163 DIP:DIP-6428N IntAct:P53163 MINT:MINT-705819
STRING:P53163 PaxDb:P53163 PeptideAtlas:P53163 EnsemblFungi:YGL068W
GeneID:852811 KEGG:sce:YGL068W CYGD:YGL068w
GeneTree:ENSGT00390000000190 OMA:GVAKPPN NextBio:972342
Genevestigator:P53163 GermOnline:YGL068W Uniprot:P53163
Length = 194
Score = 106 (42.4 bits), Expect = 0.00054, P = 0.00054
Identities = 31/89 (34%), Positives = 46/89 (51%)
Query: 119 SKIYLTCK--PTKVSAQTATEAVSSSSEQPFPIPTPDGADKTYSPKITKLANDISSLTLL 176
S I++ + P +S T T +S++ P+ + PKI+K+ DIS LTLL
Sbjct: 11 SSIWMKTRVTPALISPITITTRFNSTTTTA---PSHKDDVRPVDPKISKIVQDISQLTLL 67
Query: 177 ECADLSSLLKKQLNLPDAPMMAMGAFAQG 205
E + L + LK LN+P+ M MG F G
Sbjct: 68 ETSSLINELKTVLNIPEISM-PMGGFMAG 95
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.378 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 228 228 0.00081 113 3 11 22 0.39 33
32 0.41 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 37
No. of states in DFA: 582 (62 KB)
Total size of DFA: 157 KB (2095 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:02
No. of threads or processors used: 24
Search cpu time: 21.41u 0.07s 21.48t Elapsed: 00:00:23
Total cpu time: 21.41u 0.07s 21.48t Elapsed: 00:00:25
Start: Thu Aug 15 13:22:21 2013 End: Thu Aug 15 13:22:46 2013