RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4496
         (228 letters)



>d1mp1a_ a.188.1.1 (A:) Ser/Arg-related nuclear matrix protein
          srm160 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 111

 Score = 68.2 bits (167), Expect = 1e-15
 Identities = 25/46 (54%), Positives = 39/46 (84%)

Query: 16 QKVDMTKVKLDILKPWITQKITQLLGMEDDVVVAFVYNQLEAEKVS 61
          +KVDM+KV L+++KPWIT+++T++LG EDDVV+ F++NQLE +   
Sbjct: 13 KKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPD 58


>d1tlqa_ a.195.1.1 (A:) Hypothetical protein YpjQ {Bacillus subtilis
           [TaxId: 1423]}
          Length = 161

 Score = 26.6 bits (59), Expect = 1.7
 Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 4/31 (12%)

Query: 25  LDILKPWITQKITQLLG----MEDDVVVAFV 51
           LD  K  I +++ +         DD+V A  
Sbjct: 116 LDKEKIGIIKELDESPDGIHTFLDDIVAALA 146


>d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein, LtrC
           {Listeria monocytogenes [TaxId: 1639]}
          Length = 159

 Score = 26.2 bits (58), Expect = 2.7
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 5/32 (15%)

Query: 25  LDILKPWITQKITQLLG-----MEDDVVVAFV 51
           +D +KP I  K+ +  G       DD+V A  
Sbjct: 115 IDKVKPGILAKLNEHDGIAVHTFLDDIVGAIA 146


>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
           (Chlamydomonas reinhardtii) [TaxId: 3055]}
          Length = 198

 Score = 26.2 bits (56), Expect = 2.9
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 161 PKITKLANDISSLTLLECADLSS 183
           P I K+   +S+L   +   LS+
Sbjct: 35  PPIEKMDATLSTLKACKHLALST 57


>d1rfza_ a.195.1.1 (A:) YutG homologue {Bacillus stearothermophilus
           [TaxId: 1422]}
          Length = 164

 Score = 25.8 bits (57), Expect = 3.1
 Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 5/32 (15%)

Query: 25  LDILKPWITQKITQLLG-----MEDDVVVAFV 51
           +D  KP I Q +            DD+V A  
Sbjct: 122 IDKQKPGILQYLNDKSTGKCNTFLDDIVGAIA 153


>d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206
           {Streptomyces coelicolor [TaxId: 1902]}
          Length = 148

 Score = 25.7 bits (56), Expect = 3.1
 Identities = 8/57 (14%), Positives = 21/57 (36%)

Query: 30  PWITQKITQLLGMEDDVVVAFVYNQLEAEKVSTIFEFDLAKKVPVCKEIGKGDLGLM 86
           P I   ++  L ++            E   +++    D  +++     + +G  GL+
Sbjct: 73  PRILDDLSTFLEVDPHAFRFSRATLTEYGNIASAVVLDALRRLFDEGGVEEGARGLL 129


>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 143

 Score = 25.1 bits (55), Expect = 5.4
 Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 2/26 (7%)

Query: 103 RR--KILRGRKTITRTYYSKIYLTCK 126
           R   + LR   T++ + Y  +Y    
Sbjct: 102 RTKLRELRDEGTLSSSQYRDLYDKAG 127


>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 162

 Score = 24.9 bits (53), Expect = 6.3
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 162 KITKLANDISSLTLLECADLS 182
           KI  + N  ++L   +  D S
Sbjct: 29  KIPVIENLGATLDQFDAIDFS 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 792,042
Number of extensions: 33697
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 13
Length of query: 228
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 146
Effective length of database: 1,281,736
Effective search space: 187133456
Effective search space used: 187133456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)