BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy45
(69 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AQI|A Chain A, H240a Variant Of Human Ferrochelatase
pdb|3AQI|B Chain B, H240a Variant Of Human Ferrochelatase
Length = 359
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 8 VDNIRRAAAPNDHPLFIDALVDIVSSHLRSKTKINPKFLNRCPHCVNPKCSQAKQWFS 65
V+NIRRA + N +PLF AL D+V SH++S + + CP CVNP C + K +F+
Sbjct: 298 VENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFT 355
>pdb|2PO7|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His
341 Replaced By Cys
pdb|2PO7|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With His
341 Replaced By Cys
Length = 359
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 8 VDNIRRAAAPNDHPLFIDALVDIVSSHLRSKTKINPKFLNRCPHCVNPKCSQAKQWFS 65
V+NIRRA + N +PLF AL D+V SH++S + + CP CVNP C + K +F+
Sbjct: 298 VENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFT 355
>pdb|1HRK|A Chain A, Crystal Structure Of Human Ferrochelatase
pdb|1HRK|B Chain B, Crystal Structure Of Human Ferrochelatase
pdb|2HRC|A Chain A, 1.7 Angstrom Structure Of Human Ferrochelatase Variant
R115l
pdb|2HRC|B Chain B, 1.7 Angstrom Structure Of Human Ferrochelatase Variant
R115l
Length = 359
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 8 VDNIRRAAAPNDHPLFIDALVDIVSSHLRSKTKINPKFLNRCPHCVNPKCSQAKQWFS 65
V+NIRRA + N +PLF AL D+V SH++S + + CP CVNP C + K +F+
Sbjct: 298 VENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFT 355
>pdb|2QD3|A Chain A, Wild Type Human Ferrochelatase Crystallized With Ammonium
Sulfate
pdb|2QD3|B Chain B, Wild Type Human Ferrochelatase Crystallized With Ammonium
Sulfate
pdb|2QD4|A Chain A, Wild Type Human Ferrochelatase Crystallized With Mncl2
pdb|2QD4|B Chain B, Wild Type Human Ferrochelatase Crystallized With Mncl2
pdb|2QD5|A Chain A, Structure Of Wild Type Human Ferrochelatase In Complex
With A Lead- Porphyrin Compound
pdb|2QD5|B Chain B, Structure Of Wild Type Human Ferrochelatase In Complex
With A Lead- Porphyrin Compound
pdb|3HCN|A Chain A, Hg And Protoporphyrin Bound Human Ferrochelatase
pdb|3HCN|B Chain B, Hg And Protoporphyrin Bound Human Ferrochelatase
pdb|3HCO|A Chain A, Human Ferrochelatase With Cd And Protoporphyrin Ix Bound
pdb|3HCO|B Chain B, Human Ferrochelatase With Cd And Protoporphyrin Ix Bound
pdb|3HCR|A Chain A, Human Ferrochelatase With Deuteroporphyrin And Ni Bound
pdb|3HCR|B Chain B, Human Ferrochelatase With Deuteroporphyrin And Ni Bound
Length = 359
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 8 VDNIRRAAAPNDHPLFIDALVDIVSSHLRSKTKINPKFLNRCPHCVNPKCSQAKQWFS 65
V+NIRRA + N +PLF AL D+V SH++S + + CP CVNP C + K +F+
Sbjct: 298 VENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFT 355
>pdb|2QD2|A Chain A, F110a Variant Of Human Ferrochelatase With Protoheme Bound
pdb|2QD2|B Chain B, F110a Variant Of Human Ferrochelatase With Protoheme Bound
pdb|3HCP|A Chain A, Human Ferrochelatase With Mn And Deuteroporphyrin Bound
pdb|3HCP|B Chain B, Human Ferrochelatase With Mn And Deuteroporphyrin Bound
Length = 359
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 8 VDNIRRAAAPNDHPLFIDALVDIVSSHLRSKTKINPKFLNRCPHCVNPKCSQAKQWFS 65
V+NIRRA + N +PLF AL D+V SH++S + + CP CVNP C + K +F+
Sbjct: 298 VENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFT 355
>pdb|2PO5|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His
263 Replaced By Cys
pdb|2PO5|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With His
263 Replaced By Cys
Length = 359
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 8 VDNIRRAAAPNDHPLFIDALVDIVSSHLRSKTKINPKFLNRCPHCVNPKCSQAKQWFS 65
V+NIRRA + N +PLF AL D+V SH++S + + CP CVNP C + K +F+
Sbjct: 298 VENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFT 355
>pdb|2PNJ|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With Phe
337 Replaced By Ala
pdb|2PNJ|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With Phe
337 Replaced By Ala
Length = 359
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 8 VDNIRRAAAPNDHPLFIDALVDIVSSHLRSKTKINPKFLNRCPHCVNPKCSQAKQWFS 65
V+NIRRA + N +PLF AL D+V SH++S + + CP CVNP C + K +F+
Sbjct: 298 VENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFT 355
>pdb|2HRE|A Chain A, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|B Chain B, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|C Chain C, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|D Chain D, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2QD1|A Chain A, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|B Chain B, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|C Chain C, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|D Chain D, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
Length = 359
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 8 VDNIRRAAAPNDHPLFIDALVDIVSSHLRSKTKINPKFLNRCPHCVNPKCSQAKQWFS 65
V+NIRRA + N +PLF AL D+V SH++S + + CP CVNP C + K +F+
Sbjct: 298 VENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFT 355
>pdb|4F4D|A Chain A, F337r Variant Of Human Ferrochelatase
pdb|4F4D|B Chain B, F337r Variant Of Human Ferrochelatase
Length = 359
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 8 VDNIRRAAAPNDHPLFIDALVDIVSSHLRSKTKINPKFLNRCPHCVNPKCSQAKQWFS 65
V+NIRRA + N +PLF AL D+V SH++S + + CP CVNP C + K +F+
Sbjct: 298 VENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFT 355
>pdb|1L8X|A Chain A, Crystal Structure Of Ferrochelatase From The Yeast,
Saccharomyces Cerevisiae, With Cobalt(Ii) As The
Substrate Ion
pdb|1L8X|B Chain B, Crystal Structure Of Ferrochelatase From The Yeast,
Saccharomyces Cerevisiae, With Cobalt(Ii) As The
Substrate Ion
pdb|1LBQ|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae
Ferrochelatase
pdb|1LBQ|B Chain B, The Crystal Structure Of Saccharomyces Cerevisiae
Ferrochelatase
Length = 362
Score = 28.5 bits (62), Expect = 0.96, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 1 MAEEQLKVDNIRRAAAPNDHPLFIDALVDIVSSHLRSKTKINPKFLNRCP 50
+ E + K D +R + N + FI+ + D+V SHL+S N + N+ P
Sbjct: 293 IGESEYK-DKFKRCESLNGNQTFIEGMADLVKSHLQS----NQLYSNQLP 337
>pdb|3VC1|A Chain A, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|B Chain B, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|C Chain C, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|D Chain D, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|E Chain E, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|F Chain F, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|G Chain G, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|H Chain H, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|I Chain I, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|J Chain J, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|K Chain K, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|L Chain L, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|A Chain A, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|B Chain B, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|C Chain C, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|D Chain D, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|E Chain E, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|F Chain F, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|G Chain G, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|H Chain H, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|I Chain I, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|J Chain J, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|K Chain K, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|L Chain L, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
Length = 312
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 14 AAAPNDHPLFIDALVDIVSSHLRSKTKINPKFLNRCPHCVNPKCSQAKQWFSQLCA 69
A+ N+ +++D L D+ S H R K+ +++ C NP+ Q +W SQ+ A
Sbjct: 188 ASWNNESTMYVD-LHDLFSEHSRF-LKVGGRYVT-ITGCWNPRYGQPSKWVSQINA 240
>pdb|2YK0|A Chain A, Structure Of The N-Terminal Nts-Dbl1-Alpha And Cidr-Gamma
Double Domain Of The Pfemp1 Protein From Plasmodium
Falciparum Varo Strain
Length = 790
Score = 25.4 bits (54), Expect = 9.1, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 27 LVDIVSSHLRSKTKINP--KFLNRCPH-CVNPKCSQAKQWFSQ 66
L D + + +SK KINP K N C C+N KC+ ++W ++
Sbjct: 583 LKDFLEGYKKSKRKINPCTKDKNSCIKLCIN-KCTCVEEWLNK 624
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.133 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,927,013
Number of Sequences: 62578
Number of extensions: 53030
Number of successful extensions: 187
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 177
Number of HSP's gapped (non-prelim): 12
length of query: 69
length of database: 14,973,337
effective HSP length: 39
effective length of query: 30
effective length of database: 12,532,795
effective search space: 375983850
effective search space used: 375983850
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)