Query psy45
Match_columns 69
No_of_seqs 100 out of 408
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 18:45:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy45.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/45hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1321|consensus 99.7 6.4E-18 1.4E-22 125.4 3.8 67 2-68 327-393 (395)
2 PLN02449 ferrochelatase 98.8 5.3E-09 1.2E-13 80.5 5.7 37 1-37 379-415 (485)
3 PF00762 Ferrochelatase: Ferro 98.8 3.6E-09 7.8E-14 77.0 3.4 34 2-35 283-316 (316)
4 COG0276 HemH Protoheme ferro-l 98.7 1.7E-08 3.8E-13 74.4 4.0 35 2-36 285-319 (320)
5 PRK12435 ferrochelatase; Provi 98.6 6.2E-08 1.3E-12 70.6 4.0 34 2-36 275-308 (311)
6 TIGR00109 hemH ferrochelatase. 98.5 8.9E-08 1.9E-12 69.7 3.9 34 2-35 288-321 (322)
7 PRK00035 hemH ferrochelatase; 98.1 3.2E-06 6.9E-11 61.1 4.0 35 2-36 290-324 (333)
8 COG0276 HemH Protoheme ferro-l 85.6 1.3 2.9E-05 33.0 3.8 32 7-38 149-180 (320)
9 PLN02757 sirohydrochlorine fer 84.3 2.7 5.8E-05 27.9 4.5 31 7-38 105-135 (154)
10 PRK12435 ferrochelatase; Provi 83.6 1.6 3.5E-05 31.9 3.5 31 7-37 136-166 (311)
11 PLN02449 ferrochelatase 74.0 4.3 9.2E-05 31.9 3.4 28 10-37 243-270 (485)
12 PF00762 Ferrochelatase: Ferro 69.5 6.7 0.00015 28.7 3.4 32 7-38 147-178 (316)
13 PF08573 SAE2: DNA repair prot 67.8 4.6 0.0001 24.7 1.9 18 50-67 16-33 (93)
14 PRK10076 pyruvate formate lyas 67.1 9.9 0.00021 26.3 3.7 30 4-33 124-156 (213)
15 PRK00035 hemH ferrochelatase; 56.3 18 0.00038 26.1 3.5 27 10-36 155-181 (333)
16 TIGR00109 hemH ferrochelatase. 56.2 15 0.00033 26.8 3.1 27 10-36 155-181 (322)
17 PRK00923 sirohydrochlorin coba 55.4 19 0.0004 22.3 3.1 24 10-33 102-125 (126)
18 cd03414 CbiX_SirB_C Sirohydroc 55.2 23 0.00049 21.4 3.4 25 10-34 92-116 (117)
19 PF14566 PTPlike_phytase: Inos 54.7 13 0.00028 24.2 2.4 32 2-34 87-121 (149)
20 cd03415 CbiX_CbiC Archaeal sir 48.5 29 0.00062 22.2 3.2 24 10-33 101-124 (125)
21 PF15630 CENP-S: Kinetochore c 43.9 27 0.00058 20.8 2.4 19 17-35 24-42 (76)
22 PF13963 Transpos_assoc: Trans 43.7 66 0.0014 18.7 4.2 45 16-63 10-56 (77)
23 PRK14465 ribosomal RNA large s 43.4 32 0.00068 25.8 3.2 25 10-34 259-283 (342)
24 PRK14457 ribosomal RNA large s 42.4 31 0.00068 25.7 3.0 25 10-34 259-283 (345)
25 PRK14462 ribosomal RNA large s 41.5 36 0.00078 25.6 3.3 25 10-34 267-291 (356)
26 PF04273 DUF442: Putative phos 40.4 34 0.00074 21.4 2.6 31 2-33 52-84 (110)
27 PRK14454 ribosomal RNA large s 40.3 34 0.00074 25.4 3.0 25 10-34 255-279 (342)
28 PRK05782 bifunctional sirohydr 40.0 49 0.0011 24.8 3.8 29 10-38 107-135 (335)
29 PF08970 Sda: Sporulation inhi 38.5 10 0.00023 20.9 0.0 24 10-33 12-35 (46)
30 TIGR00048 radical SAM enzyme, 37.9 41 0.00088 25.0 3.0 25 10-34 262-286 (355)
31 PRK11194 ribosomal RNA large s 37.1 42 0.00091 25.4 3.0 25 10-34 266-290 (372)
32 PLN02489 homocysteine S-methyl 37.0 27 0.00059 25.7 2.0 20 16-35 316-335 (335)
33 PRK14455 ribosomal RNA large s 36.1 47 0.001 24.7 3.1 25 10-34 266-290 (356)
34 cd01994 Alpha_ANH_like_IV This 36.0 71 0.0015 21.6 3.8 33 2-35 53-85 (194)
35 PRK14467 ribosomal RNA large s 34.2 51 0.0011 24.6 3.1 24 10-33 256-279 (348)
36 PRK14453 chloramphenicol/florf 34.0 56 0.0012 24.4 3.2 25 10-34 252-276 (347)
37 TIGR00615 recR recombination p 32.5 1.1E+02 0.0024 21.4 4.3 40 17-56 32-75 (195)
38 PRK06849 hypothetical protein; 31.9 65 0.0014 23.4 3.3 28 7-34 47-75 (389)
39 PF09824 ArsR: ArsR transcript 31.0 38 0.00082 23.3 1.8 17 15-31 129-145 (160)
40 PRK14459 ribosomal RNA large s 29.9 71 0.0015 24.2 3.3 25 10-34 285-309 (373)
41 PRK00076 recR recombination pr 28.5 1.4E+02 0.0029 20.9 4.2 40 17-56 32-75 (196)
42 cd03028 GRX_PICOT_like Glutare 28.3 51 0.0011 19.3 1.8 29 36-67 6-36 (90)
43 COG2905 Predicted signal-trans 27.7 1E+02 0.0022 25.3 3.9 43 20-68 377-423 (610)
44 PRK14460 ribosomal RNA large s 27.3 82 0.0018 23.5 3.2 25 10-34 261-285 (354)
45 KOG0081|consensus 26.0 1.2E+02 0.0027 21.4 3.7 34 2-35 150-184 (219)
46 COG4860 Uncharacterized protei 25.7 53 0.0012 22.6 1.8 19 13-31 134-152 (170)
47 cd02847 Chitobiase_C_term Chit 25.4 39 0.00084 20.2 1.0 13 4-18 4-16 (78)
48 COG3088 CcmH Uncharacterized p 25.0 37 0.00081 23.1 0.9 12 46-57 44-55 (153)
49 PRK14468 ribosomal RNA large s 24.6 94 0.002 23.0 3.1 25 10-34 250-274 (343)
50 PRK10144 formate-dependent nit 24.4 42 0.00091 22.0 1.0 12 46-57 40-51 (126)
51 PF01136 Peptidase_U32: Peptid 24.4 1.5E+02 0.0032 19.9 3.8 33 4-37 166-198 (233)
52 PF12637 TSCPD: TSCPD domain; 24.2 1.6E+02 0.0036 17.7 3.6 30 10-39 26-55 (95)
53 PF06935 DUF1284: Protein of u 23.7 1.1E+02 0.0023 18.9 2.8 41 20-60 3-49 (103)
54 PRK14470 ribosomal RNA large s 23.6 95 0.0021 23.0 2.9 25 10-34 250-274 (336)
55 KOG2907|consensus 22.6 43 0.00093 21.9 0.8 33 20-56 51-84 (116)
56 PF14205 Cys_rich_KTR: Cystein 22.4 48 0.001 19.0 0.9 18 43-60 25-42 (55)
57 COG3357 Predicted transcriptio 22.1 40 0.00087 21.4 0.6 14 46-59 76-89 (97)
58 PHA01749 coat protein 21.9 35 0.00076 22.3 0.3 27 6-33 101-127 (134)
59 KOG1321|consensus 21.8 1.3E+02 0.0028 23.3 3.3 32 5-37 188-219 (395)
60 TIGR01244 conserved hypothetic 21.6 2E+02 0.0043 18.1 3.8 29 3-32 53-83 (135)
61 PTZ00062 glutaredoxin; Provisi 21.2 1.7E+02 0.0036 20.3 3.6 38 27-67 102-141 (204)
62 PRK14463 ribosomal RNA large s 21.1 1.3E+02 0.0027 22.5 3.1 25 10-34 254-278 (349)
63 PRK13844 recombination protein 20.4 2.4E+02 0.0052 19.8 4.3 40 17-56 36-79 (200)
64 PF14570 zf-RING_4: RING/Ubox 20.3 51 0.0011 18.2 0.7 10 46-55 37-46 (48)
65 TIGR03147 cyt_nit_nrfF cytochr 20.1 57 0.0012 21.4 1.0 12 46-57 40-51 (126)
No 1
>KOG1321|consensus
Probab=99.71 E-value=6.4e-18 Score=125.38 Aligned_cols=67 Identities=37% Similarity=0.750 Sum_probs=63.7
Q ss_pred hhhhcCCCceEEccCCCCCHHHHHHHHHHHHHhhhcCCCCCcccCCCCCCCCCcchhhhHHHHhhhh
Q psy45 2 AEEQLKVDNIRRAAAPNDHPLFIDALVDIVSSHLRSKTKINPKFLNRCPHCVNPKCSQAKQWFSQLC 68 (69)
Q Consensus 2 ~A~e~G~~~~~Rvp~LNd~p~fI~aLadlV~~~l~~~~~~s~q~~~~Cp~c~~~~c~~~~~~f~~~~ 68 (69)
.|.+.|++++.|+|+||++|.||++|||+|.+||.+.+.+|.|+..+||+|+||.|++.+.||++++
T Consensus 327 ~a~k~gve~~~Rv~sln~~p~fI~~lADlV~ehL~s~~~~s~q~l~~~~~~~ne~~~e~~s~~~~~~ 393 (395)
T KOG1321|consen 327 EALKKGVENWKRVESLNGNPTFIEGLADLVAEHLKSNQAYSNQFLARCPGCSNEPCKEAKSWFGNHE 393 (395)
T ss_pred HHHHHhhhhheeccCCCCCccHHHHHHHHHHHhhhhhhhcchhhhhhCcCcCChhhhHHHHHHHHhh
Confidence 4667889999999999999999999999999999999999999888899999999999999999986
No 2
>PLN02449 ferrochelatase
Probab=98.84 E-value=5.3e-09 Score=80.53 Aligned_cols=37 Identities=27% Similarity=0.270 Sum_probs=34.3
Q ss_pred ChhhhcCCCceEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy45 1 MAEEQLKVDNIRRAAAPNDHPLFIDALVDIVSSHLRS 37 (69)
Q Consensus 1 ~~A~e~G~~~~~Rvp~LNd~p~fI~aLadlV~~~l~~ 37 (69)
++|+++|+++|.|+|+|||+|.||++|+++|.+++..
T Consensus 379 e~a~e~G~~~~~rVP~LN~~p~FI~~La~lV~~~l~~ 415 (485)
T PLN02449 379 ELALESGIENWGRVPALGCEPTFISDLADAVIEALPY 415 (485)
T ss_pred HHHHHcCCceEEEcCCCCCCHHHHHHHHHHHHHHhhc
Confidence 3678999989999999999999999999999999875
No 3
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=98.80 E-value=3.6e-09 Score=76.97 Aligned_cols=34 Identities=38% Similarity=0.566 Sum_probs=27.8
Q ss_pred hhhhcCCCceEEccCCCCCHHHHHHHHHHHHHhh
Q psy45 2 AEEQLKVDNIRRAAAPNDHPLFIDALVDIVSSHL 35 (69)
Q Consensus 2 ~A~e~G~~~~~Rvp~LNd~p~fI~aLadlV~~~l 35 (69)
+|+++|+++|.|+|+|||+|.||++|+++|.++|
T Consensus 283 ~~~~~G~~~~~~ip~lN~~~~fi~~La~~v~~~~ 316 (316)
T PF00762_consen 283 LAEEAGGEEFVRIPCLNDSPEFIEALADLVREHL 316 (316)
T ss_dssp HHHHHTCCEEEE---STT-HHHHHHHHHHHHHHH
T ss_pred HHHHcCCceEEEeCCCCCCHHHHHHHHHHHHhCc
Confidence 5789999999999999999999999999998875
No 4
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=98.69 E-value=1.7e-08 Score=74.43 Aligned_cols=35 Identities=37% Similarity=0.459 Sum_probs=31.7
Q ss_pred hhhhcCCCceEEccCCCCCHHHHHHHHHHHHHhhh
Q psy45 2 AEEQLKVDNIRRAAAPNDHPLFIDALVDIVSSHLR 36 (69)
Q Consensus 2 ~A~e~G~~~~~Rvp~LNd~p~fI~aLadlV~~~l~ 36 (69)
++++.|+.+|.|+|||||+|.||++|+++|.+++.
T Consensus 285 ~~~~~Gg~~y~rip~lN~~p~fi~~la~lv~~~~~ 319 (320)
T COG0276 285 LAEEAGGKKYVRIPCLNDSPEFIDALADLVRELLN 319 (320)
T ss_pred HHHHhCCccEEecCCCCCCHHHHHHHHHHHHHHhc
Confidence 57899988999999999999999999999987753
No 5
>PRK12435 ferrochelatase; Provisional
Probab=98.57 E-value=6.2e-08 Score=70.55 Aligned_cols=34 Identities=38% Similarity=0.689 Sum_probs=30.9
Q ss_pred hhhhcCCCceEEccCCCCCHHHHHHHHHHHHHhhh
Q psy45 2 AEEQLKVDNIRRAAAPNDHPLFIDALVDIVSSHLR 36 (69)
Q Consensus 2 ~A~e~G~~~~~Rvp~LNd~p~fI~aLadlV~~~l~ 36 (69)
+|+++|++ |.|+|+|||+|.||++|+++|.+++.
T Consensus 275 ~a~~~G~~-~~r~~~lN~~p~fi~~La~lv~~~~~ 308 (311)
T PRK12435 275 VTDEIGAK-YYRPEMPNADPLFIDALADVVLKKLK 308 (311)
T ss_pred HHHHcCCc-EEeccCCCCCHHHHHHHHHHHHHHHh
Confidence 57899995 99999999999999999999988763
No 6
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=98.53 E-value=8.9e-08 Score=69.65 Aligned_cols=34 Identities=32% Similarity=0.489 Sum_probs=31.0
Q ss_pred hhhhcCCCceEEccCCCCCHHHHHHHHHHHHHhh
Q psy45 2 AEEQLKVDNIRRAAAPNDHPLFIDALVDIVSSHL 35 (69)
Q Consensus 2 ~A~e~G~~~~~Rvp~LNd~p~fI~aLadlV~~~l 35 (69)
.+++.|+++|.|+|+|||+|.||++|+++|.+++
T Consensus 288 ~~~~~G~~~~~~vp~lN~~p~fi~~l~~~v~~~~ 321 (322)
T TIGR00109 288 VAEDAGGDKYQRCPALNAKPEFIEAMATLVKKKL 321 (322)
T ss_pred HHHHcCCCeEEECCCCCCCHHHHHHHHHHHHHhh
Confidence 4678999889999999999999999999998764
No 7
>PRK00035 hemH ferrochelatase; Reviewed
Probab=98.12 E-value=3.2e-06 Score=61.05 Aligned_cols=35 Identities=37% Similarity=0.586 Sum_probs=31.4
Q ss_pred hhhhcCCCceEEccCCCCCHHHHHHHHHHHHHhhh
Q psy45 2 AEEQLKVDNIRRAAAPNDHPLFIDALVDIVSSHLR 36 (69)
Q Consensus 2 ~A~e~G~~~~~Rvp~LNd~p~fI~aLadlV~~~l~ 36 (69)
++.+.|++.|.|+|+||++|.||++|+++|.+++.
T Consensus 290 ~~~~~G~~~~~~~~~ln~~~~~i~~l~~~v~~~~~ 324 (333)
T PRK00035 290 IAEEAGGEEFRRIPCLNDSPEFIEALADLVRENLQ 324 (333)
T ss_pred HHHHcCCceEEECCCCCCCHHHHHHHHHHHHHHhc
Confidence 46789998899999999999999999999988763
No 8
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=85.57 E-value=1.3 Score=32.99 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=28.3
Q ss_pred CCCceEEccCCCCCHHHHHHHHHHHHHhhhcC
Q psy45 7 KVDNIRRAAAPNDHPLFIDALVDIVSSHLRSK 38 (69)
Q Consensus 7 G~~~~~Rvp~LNd~p~fI~aLadlV~~~l~~~ 38 (69)
|...+.-|+...++|.||+++|+.|.+++++-
T Consensus 149 ~~~~i~~I~~~~~~p~yI~a~a~~I~~~~~~~ 180 (320)
T COG0276 149 GQPKISTIPDYYDEPLYIEALADSIREKLAKH 180 (320)
T ss_pred CCCceEEecCccCChHHHHHHHHHHHHHHHhc
Confidence 44469999999999999999999999998774
No 9
>PLN02757 sirohydrochlorine ferrochelatase
Probab=84.30 E-value=2.7 Score=27.89 Aligned_cols=31 Identities=23% Similarity=0.196 Sum_probs=27.3
Q ss_pred CCCceEEccCCCCCHHHHHHHHHHHHHhhhcC
Q psy45 7 KVDNIRRAAAPNDHPLFIDALVDIVSSHLRSK 38 (69)
Q Consensus 7 G~~~~~Rvp~LNd~p~fI~aLadlV~~~l~~~ 38 (69)
|+ +|...+.|+++|.+++.|.+.+.+++...
T Consensus 105 ~~-~i~~~~pLG~~p~l~~ll~~Ri~eal~~~ 135 (154)
T PLN02757 105 GV-KYLVTAPIGLHELMVDVVNDRIKYCLSHV 135 (154)
T ss_pred Cc-EEEECCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 44 58999999999999999999999888665
No 10
>PRK12435 ferrochelatase; Provisional
Probab=83.56 E-value=1.6 Score=31.94 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=26.5
Q ss_pred CCCceEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy45 7 KVDNIRRAAAPNDHPLFIDALVDIVSSHLRS 37 (69)
Q Consensus 7 G~~~~~Rvp~LNd~p~fI~aLadlV~~~l~~ 37 (69)
+...+..++...++|.||++|++.|.+++..
T Consensus 136 ~~~~~~~i~~~~~~p~yi~a~a~~I~~~l~~ 166 (311)
T PRK12435 136 GGPTITSIESWYDEPKFIQYWADQIKETFAQ 166 (311)
T ss_pred CCCeEEEeCCccCChHHHHHHHHHHHHHHHH
Confidence 3446889999999999999999999888743
No 11
>PLN02449 ferrochelatase
Probab=74.01 E-value=4.3 Score=31.93 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=25.0
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSSHLRS 37 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~~l~~ 37 (69)
.+.-|+...++|.||+++++.|.+++..
T Consensus 243 ~~~~I~~~~~~p~yI~A~a~~I~~~l~~ 270 (485)
T PLN02449 243 QHTVIPSWYQREGYVKAMADLIKKELAK 270 (485)
T ss_pred eeEEeccccCChHHHHHHHHHHHHHHHh
Confidence 4788999999999999999999988743
No 12
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=69.46 E-value=6.7 Score=28.68 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=23.8
Q ss_pred CCCceEEccCCCCCHHHHHHHHHHHHHhhhcC
Q psy45 7 KVDNIRRAAAPNDHPLFIDALVDIVSSHLRSK 38 (69)
Q Consensus 7 G~~~~~Rvp~LNd~p~fI~aLadlV~~~l~~~ 38 (69)
....+.-++...++|.||+++++.|.+++...
T Consensus 147 ~~~~~~~i~~~~~~p~yi~a~~~~i~~~l~~~ 178 (316)
T PF00762_consen 147 PNPKVRFIPSFYDHPAYIEALAERIREALERF 178 (316)
T ss_dssp SSSEEEEE---TT-HHHHHHHHHHHHHHHTTS
T ss_pred CCCeEEEeCCccCCHHHHHHHHHHHHHHHHhc
Confidence 33468899999999999999999999988664
No 13
>PF08573 SAE2: DNA repair protein endonuclease SAE2/CtIP C-terminus; InterPro: IPR013882 SAE2 is a protein involved in repairing meiotic and mitotic double-strand breaks in DNA. It has been shown to negatively regulate DNA damage checkpoint signalling [, ]. SAE2 is homologous to the CtIP proteins in mammals and an homologous protein in plants. Crucial sequence motifs that are highly conserved are the CxxC and the RHR motifs in this C-terminal part of the protein []. It is now known to be an endonuclease. In budding yeast, genetic evidence suggests that the SAE2 protein is essential for the processing of hairpin DNA intermediates and meiotic double-strand breaks by Mre11/Rad50 complexes. SAE2 binds DNA and exhibits endonuclease activity on single-stranded DNA independently of Mre11/Rad50 complexes, but hairpin DNA structures are cleaved cooperatively in the presence of Mre11/Rad50 or Mre11/Rad50/Xrs2. Hairpin structures are not processed at the tip by SAE2 but rather at single-stranded DNA regions adjacent to the hairpin. The catalytic activities of SAE2 are important for its biological functions [].
Probab=67.80 E-value=4.6 Score=24.70 Aligned_cols=18 Identities=28% Similarity=0.898 Sum_probs=16.6
Q ss_pred CCCCCcchhhhHHHHhhh
Q psy45 50 PHCVNPKCSQAKQWFSQL 67 (69)
Q Consensus 50 p~c~~~~c~~~~~~f~~~ 67 (69)
+||++|.|.+.+.||..+
T Consensus 16 ~G~~~~~C~~C~~~y~a~ 33 (93)
T PF08573_consen 16 PGCTRPDCKCCGKFYRAL 33 (93)
T ss_pred CCCCccchHHHHHHHHHH
Confidence 799999999999999876
No 14
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=67.06 E-value=9.9 Score=26.33 Aligned_cols=30 Identities=13% Similarity=0.039 Sum_probs=23.9
Q ss_pred hhcCCCceEE---ccCCCCCHHHHHHHHHHHHH
Q psy45 4 EQLKVDNIRR---AAAPNDHPLFIDALVDIVSS 33 (69)
Q Consensus 4 ~e~G~~~~~R---vp~LNd~p~fI~aLadlV~~ 33 (69)
.+.|++-..| ||-+||++.-|+.+++.+.+
T Consensus 124 ~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~ 156 (213)
T PRK10076 124 VSEGVNVIPRLPLIPGFTLSRENMQQALDVLIP 156 (213)
T ss_pred HhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4667765556 67779999999999999965
No 15
>PRK00035 hemH ferrochelatase; Reviewed
Probab=56.31 E-value=18 Score=26.14 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=24.6
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHhhh
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSSHLR 36 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~~l~ 36 (69)
.+..++.+.++|.+|+++++.|.+++.
T Consensus 155 ~i~~i~~~~~~p~~i~~l~~~I~~~~~ 181 (333)
T PRK00035 155 EIRFIRSYYDHPGYIEALAESIREALA 181 (333)
T ss_pred cEEEeCCccCCHHHHHHHHHHHHHHHH
Confidence 588899999999999999999988873
No 16
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=56.15 E-value=15 Score=26.80 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=24.1
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHhhh
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSSHLR 36 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~~l~ 36 (69)
.+.-++...++|.||+++++.|.+++.
T Consensus 155 ~~~~i~~~~~~p~yi~a~~~~I~~~l~ 181 (322)
T TIGR00109 155 TISVIESWYDNPKYIKALADSIKETLA 181 (322)
T ss_pred eEEEeCccccCcHHHHHHHHHHHHHHH
Confidence 577899999999999999999988864
No 17
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=55.44 E-value=19 Score=22.27 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=20.9
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHH
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSS 33 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~ 33 (69)
.+...+.|+++|.+++.+.+-+.+
T Consensus 102 ~i~~~~~lG~~p~l~~~~~~r~~e 125 (126)
T PRK00923 102 EIVYAEPLGADERIADIVLKRANE 125 (126)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHhh
Confidence 467899999999999999988754
No 18
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=55.19 E-value=23 Score=21.39 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.5
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHh
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSSH 34 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~~ 34 (69)
.+.-.+.|+.+|.++++|.+.+.++
T Consensus 92 ~i~~~~pLG~~~~l~~~l~~r~~~~ 116 (117)
T cd03414 92 EFVLAPPLGPHPELAEALLERVREA 116 (117)
T ss_pred eEEECCCCCCCHHHHHHHHHHHHhh
Confidence 5788999999999999999888654
No 19
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=54.72 E-value=13 Score=24.16 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=22.6
Q ss_pred hhhhcCCCceEEccCCCC---CHHHHHHHHHHHHHh
Q psy45 2 AEEQLKVDNIRRAAAPND---HPLFIDALVDIVSSH 34 (69)
Q Consensus 2 ~A~e~G~~~~~Rvp~LNd---~p~fI~aLadlV~~~ 34 (69)
+++..|+ .|.|+|.... +|.-|+.+-++|.+.
T Consensus 87 ~~~~~g~-~Y~Ripitd~~~P~~~~iD~fi~~v~~~ 121 (149)
T PF14566_consen 87 LVEGNGL-RYYRIPITDHQAPDPEDIDAFINFVKSL 121 (149)
T ss_dssp HHHHTT--EEEEEEE-TTS---HHHHHHHHHHHHTS
T ss_pred HHhcCCc-eEEEEeCCCcCCCCHHHHHHHHHHHHhC
Confidence 4567899 5999999875 577788888888554
No 20
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=48.49 E-value=29 Score=22.25 Aligned_cols=24 Identities=25% Similarity=0.131 Sum_probs=20.9
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHH
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSS 33 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~ 33 (69)
.+.-.|.|+++|.++++|++-+.+
T Consensus 101 ~i~~~~pLG~~p~l~~~l~~r~~~ 124 (125)
T cd03415 101 LVYVTEPLADSPLVKLALFYRVKR 124 (125)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHh
Confidence 378889999999999999998854
No 21
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=43.85 E-value=27 Score=20.84 Aligned_cols=19 Identities=37% Similarity=0.551 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q psy45 17 PNDHPLFIDALVDIVSSHL 35 (69)
Q Consensus 17 LNd~p~fI~aLadlV~~~l 35 (69)
++-+|.||.+|+++|.+-+
T Consensus 24 ~~~s~~~i~al~ELv~~q~ 42 (76)
T PF15630_consen 24 VEVSPQFIAALTELVYKQL 42 (76)
T ss_dssp SEE-HHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHH
Confidence 4568999999999996644
No 22
>PF13963 Transpos_assoc: Transposase-associated domain
Probab=43.74 E-value=66 Score=18.72 Aligned_cols=45 Identities=20% Similarity=0.421 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhhcCCCCCcccCCCCC--CCCCcchhhhHHH
Q psy45 16 APNDHPLFIDALVDIVSSHLRSKTKINPKFLNRCP--HCVNPKCSQAKQW 63 (69)
Q Consensus 16 ~LNd~p~fI~aLadlV~~~l~~~~~~s~q~~~~Cp--~c~~~~c~~~~~~ 63 (69)
.-..+++|++++.+.|.-+......-. ..+|| .|.|.+-....+.
T Consensus 10 ~~r~s~ey~~Gv~~Fi~~A~~~~~~~~---~i~CPC~~C~N~~~~~~~~V 56 (77)
T PF13963_consen 10 KDRFSPEYIEGVEEFIDFAFSNPSNDN---MIRCPCRKCKNEKRQSRDDV 56 (77)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcccCCC---ceECCchhhccCccCCHHHH
Confidence 345789999999999966544332211 23455 8888877555444
No 23
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.41 E-value=32 Score=25.76 Aligned_cols=25 Identities=20% Similarity=0.008 Sum_probs=22.1
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHh
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSSH 34 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~~ 34 (69)
+|.-+|-+||++.-++.|++++...
T Consensus 259 eyvLI~GvNDs~eda~~L~~ll~~l 283 (342)
T PRK14465 259 EYVMIPGVNMGRENANKLVKIARSL 283 (342)
T ss_pred EEEEECCccCCHHHHHHHHHHHhhC
Confidence 4778999999999999999999653
No 24
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=42.44 E-value=31 Score=25.66 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=20.8
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHh
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSSH 34 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~~ 34 (69)
+|.-+|-+||++.-+++|++++...
T Consensus 259 ey~LIpGvNDs~e~a~~La~~l~~l 283 (345)
T PRK14457 259 EYILLGGVNDLPEHAEELANLLRGF 283 (345)
T ss_pred EEEEECCcCCCHHHHHHHHHHHhcC
Confidence 4666777899999999999999653
No 25
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=41.49 E-value=36 Score=25.58 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=21.3
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHh
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSSH 34 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~~ 34 (69)
+|.-+|-.||++.-++.|++++...
T Consensus 267 eyvLI~GvNDs~e~a~~La~llk~l 291 (356)
T PRK14462 267 EYLVIKDVNDDLKSAKKLVKLLNGI 291 (356)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhc
Confidence 4677788899999999999999653
No 26
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=40.37 E-value=34 Score=21.41 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=17.0
Q ss_pred hhhhcCCCceEEccCCCCC--HHHHHHHHHHHHH
Q psy45 2 AEEQLKVDNIRRAAAPNDH--PLFIDALVDIVSS 33 (69)
Q Consensus 2 ~A~e~G~~~~~Rvp~LNd~--p~fI~aLadlV~~ 33 (69)
.|+++|+ .|..+|.-... +.-++++.+++.+
T Consensus 52 ~a~~~Gl-~y~~iPv~~~~~~~~~v~~f~~~l~~ 84 (110)
T PF04273_consen 52 AAEALGL-QYVHIPVDGGAITEEDVEAFADALES 84 (110)
T ss_dssp HHHHCT--EEEE----TTT--HHHHHHHHHHHHT
T ss_pred HHHHcCC-eEEEeecCCCCCCHHHHHHHHHHHHh
Confidence 4679999 59999987665 4455566666533
No 27
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=40.33 E-value=34 Score=25.36 Aligned_cols=25 Identities=12% Similarity=0.014 Sum_probs=21.3
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHh
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSSH 34 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~~ 34 (69)
+|.-+|-+||++.-++.|++++...
T Consensus 255 ey~LI~gvNDs~eda~~La~llk~l 279 (342)
T PRK14454 255 EYALVKGVNDSKEDAKELGKLLKGM 279 (342)
T ss_pred EEEeECCCCCCHHHHHHHHHHHhcC
Confidence 4667888999999999999999653
No 28
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=40.02 E-value=49 Score=24.81 Aligned_cols=29 Identities=21% Similarity=0.117 Sum_probs=25.5
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHhhhcC
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSSHLRSK 38 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~~l~~~ 38 (69)
+|.-.|-|+.+|.+++.|.+-+.+++.++
T Consensus 107 ~i~l~~pLG~~p~l~~ll~~Rv~eal~~~ 135 (335)
T PRK05782 107 EFYVTEPLSDSPLVGLALYYRLARALDAL 135 (335)
T ss_pred eEEECCCCCCChHHHHHHHHHHHHHhhcC
Confidence 46889999999999999999998888655
No 29
>PF08970 Sda: Sporulation inhibitor A; InterPro: IPR015064 Members of this protein group contain two antiparallel alpha helices that are linked by a highly structured inter-helix loop to form a helical hairpin; the structure is stabilised by numerous hydrophobic and electrostatic interactions. These sporulation inhibitors are antikinases that bind to the histidine kinase KinA phosphotransfer domain and act as a molecular barricade that inhibit productive interaction between the ATP binding site and the phosphorylatable KinA His residue. This results in the inhibition of sporulation (by preventing phosphorylation of spo0A) []. ; PDB: 3FYR_B 1PV0_A.
Probab=38.54 E-value=10 Score=20.92 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=16.8
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHH
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSS 33 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~ 33 (69)
.|.++--+|-+++||+-|.+-+.+
T Consensus 12 sY~~A~el~L~~dFI~Ll~~Ei~r 35 (46)
T PF08970_consen 12 SYHKAIELNLDPDFIRLLEEEIQR 35 (46)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 466677788999999999766643
No 30
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=37.87 E-value=41 Score=25.05 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=21.7
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHh
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSSH 34 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~~ 34 (69)
+|.-+|-+||++..++.|++++...
T Consensus 262 eyvLI~GvNDs~e~a~~La~llk~l 286 (355)
T TIGR00048 262 EYVLLDGVNDQVEHAEELAELLKGT 286 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5777889999999999999999653
No 31
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.06 E-value=42 Score=25.36 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=21.4
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHh
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSSH 34 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~~ 34 (69)
+|.-+|-.||++.-++.|++++...
T Consensus 266 rypLIpGvNDs~e~a~~La~ll~~l 290 (372)
T PRK11194 266 EYVMLDHVNDGTEHAHQLAELLKDT 290 (372)
T ss_pred EEEeECCCCCCHHHHHHHHHHHhcC
Confidence 4666999999999999999999553
No 32
>PLN02489 homocysteine S-methyltransferase
Probab=36.95 E-value=27 Score=25.74 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=16.1
Q ss_pred CCCCCHHHHHHHHHHHHHhh
Q psy45 16 APNDHPLFIDALVDIVSSHL 35 (69)
Q Consensus 16 ~LNd~p~fI~aLadlV~~~l 35 (69)
|=++.|.+|++|++.|.+||
T Consensus 316 CCgt~P~hI~al~~~l~~~~ 335 (335)
T PLN02489 316 CCRTTPNTIRAISKALSERL 335 (335)
T ss_pred CCCCCHHHHHHHHHHHhcCC
Confidence 45788999999999887654
No 33
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=36.10 E-value=47 Score=24.72 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=21.8
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHh
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSSH 34 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~~ 34 (69)
+|.-+|-.||++.-++.|++++...
T Consensus 266 ey~lI~gvNDs~ed~~~La~ll~~l 290 (356)
T PRK14455 266 EYILLGGVNDQVEHAEELADLLKGI 290 (356)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 4788899999999999999999543
No 34
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=36.04 E-value=71 Score=21.60 Aligned_cols=33 Identities=9% Similarity=0.177 Sum_probs=26.8
Q ss_pred hhhhcCCCceEEccCCCCCHHHHHHHHHHHHHhh
Q psy45 2 AEEQLKVDNIRRAAAPNDHPLFIDALVDIVSSHL 35 (69)
Q Consensus 2 ~A~e~G~~~~~Rvp~LNd~p~fI~aLadlV~~~l 35 (69)
+|+.+|++ +..++...+++.+.+.|.+.+.+..
T Consensus 53 ~A~~lgip-l~~i~~~~~~e~~~~~l~~~l~~~~ 85 (194)
T cd01994 53 QAEAMGIP-LIRIEISGEEEDEVEDLKELLRKLK 85 (194)
T ss_pred HHHHcCCc-EEEEeCCCCchHHHHHHHHHHHHHH
Confidence 46789996 7788877789999999999986643
No 35
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.19 E-value=51 Score=24.62 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=21.5
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHH
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSS 33 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~ 33 (69)
+|.-+|-.||++.-++.|++++..
T Consensus 256 eyvLIpGvNDs~e~a~~La~~l~~ 279 (348)
T PRK14467 256 EYVLIKGVNDSPEDALRLAQLIGK 279 (348)
T ss_pred EEEEECCccCCHHHHHHHHHHHhc
Confidence 577889999999999999999954
No 36
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=34.01 E-value=56 Score=24.37 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=20.2
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHh
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSSH 34 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~~ 34 (69)
+|.-+|-.||++.-|++|++++...
T Consensus 252 ry~LI~GvNDs~e~a~~L~~~lk~l 276 (347)
T PRK14453 252 AYIMLEGVNDSKEHAEAVVGLLRNR 276 (347)
T ss_pred EEEeECCCCCCHHHHHHHHHHHhhc
Confidence 3555666799999999999999653
No 37
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.47 E-value=1.1e+02 Score=21.40 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHhhhcCCCCCcccCCC----CCCCCCcc
Q psy45 17 PNDHPLFIDALVDIVSSHLRSKTKINPKFLNR----CPHCVNPK 56 (69)
Q Consensus 17 LNd~p~fI~aLadlV~~~l~~~~~~s~q~~~~----Cp~c~~~~ 56 (69)
|..++..++.|++.+.+...+-..|+...... |+=|.+++
T Consensus 32 l~~~~~~~~~la~ai~~~~~~i~~C~~C~~lse~~~C~IC~d~~ 75 (195)
T TIGR00615 32 LKRDPSEVLRLAQALLEAKENLRTCSVCGAISDQEVCNICSDER 75 (195)
T ss_pred HcCCHHHHHHHHHHHHHHHHcCCcCCCCCCCCCCCcCCCCCCCC
Confidence 56778889999999877655555444432222 88887664
No 38
>PRK06849 hypothetical protein; Provisional
Probab=31.93 E-value=65 Score=23.43 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=21.8
Q ss_pred CCCceEEccCCCCC-HHHHHHHHHHHHHh
Q psy45 7 KVDNIRRAAAPNDH-PLFIDALVDIVSSH 34 (69)
Q Consensus 7 G~~~~~Rvp~LNd~-p~fI~aLadlV~~~ 34 (69)
.+..|.++|.+..+ +.|+++|.+++.++
T Consensus 47 ~~d~~~~~p~p~~d~~~~~~~L~~i~~~~ 75 (389)
T PRK06849 47 AVDGFYTIPSPRWDPDAYIQALLSIVQRE 75 (389)
T ss_pred hhhheEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 45678889877654 68999999999764
No 39
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=30.96 E-value=38 Score=23.26 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.5
Q ss_pred cCCCCCHHHHHHHHHHH
Q psy45 15 AAPNDHPLFIDALVDIV 31 (69)
Q Consensus 15 p~LNd~p~fI~aLadlV 31 (69)
..+|-+|.||++||.-.
T Consensus 129 r~l~~sp~firglAKRs 145 (160)
T PF09824_consen 129 RKLGISPVFIRGLAKRS 145 (160)
T ss_pred HHhCCCHHHHHHHHHhc
Confidence 45788999999999865
No 40
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.89 E-value=71 Score=24.24 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=22.3
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHh
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSSH 34 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~~ 34 (69)
+|.-++=+||++.-++.|++++...
T Consensus 285 eyvLi~GvNDs~e~a~~L~~llk~~ 309 (373)
T PRK14459 285 EYALIRDINDQPWRADLLGKKLHGR 309 (373)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhhc
Confidence 5888999999999999999999654
No 41
>PRK00076 recR recombination protein RecR; Reviewed
Probab=28.54 E-value=1.4e+02 Score=20.91 Aligned_cols=40 Identities=10% Similarity=0.055 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHHHhhhcCCCCCcccCC----CCCCCCCcc
Q psy45 17 PNDHPLFIDALVDIVSSHLRSKTKINPKFLN----RCPHCVNPK 56 (69)
Q Consensus 17 LNd~p~fI~aLadlV~~~l~~~~~~s~q~~~----~Cp~c~~~~ 56 (69)
|..++..++.|++.+.....+-..|+..... -|+=|.+++
T Consensus 32 l~~~~~~~~~la~~i~~~~~~i~~C~~C~~lse~~~C~IC~d~~ 75 (196)
T PRK00076 32 LQRDREDVLRLAQALEEAKEKIKHCSVCGNLTEQDPCEICSDPR 75 (196)
T ss_pred HcCCHHHHHHHHHHHHHHHHcCCcCCCCCCcCCCCcCCCCCCCC
Confidence 5578899999999987765555544332222 188777654
No 42
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=28.30 E-value=51 Score=19.25 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=17.7
Q ss_pred hcCC--CCCcccCCCCCCCCCcchhhhHHHHhhh
Q psy45 36 RSKT--KINPKFLNRCPHCVNPKCSQAKQWFSQL 67 (69)
Q Consensus 36 ~~~~--~~s~q~~~~Cp~c~~~~c~~~~~~f~~~ 67 (69)
++++ +.|+. ...||.| |-|...++++...
T Consensus 6 ~~~~vvvf~k~-~~~~~~C--p~C~~ak~~L~~~ 36 (90)
T cd03028 6 KENPVVLFMKG-TPEEPRC--GFSRKVVQILNQL 36 (90)
T ss_pred ccCCEEEEEcC-CCCCCCC--cHHHHHHHHHHHc
Confidence 4444 34554 3346666 5688888888654
No 43
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=27.74 E-value=1e+02 Score=25.28 Aligned_cols=43 Identities=28% Similarity=0.512 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHhhhcCCCCCcccCCCCCCCC---Ccc-hhhhHHHHhhhh
Q psy45 20 HPLFIDALVDIVSSHLRSKTKINPKFLNRCPHCV---NPK-CSQAKQWFSQLC 68 (69)
Q Consensus 20 ~p~fI~aLadlV~~~l~~~~~~s~q~~~~Cp~c~---~~~-c~~~~~~f~~~~ 68 (69)
+..+..++++.|.+.|..-. -.+|||-+ ||. |+...+|-.++.
T Consensus 377 ~~~yf~~f~E~v~~~L~k~G------yp~CpG~vMAsnP~Wcks~~~W~~~l~ 423 (610)
T COG2905 377 HQAYFLAFGEEVCEGLDKAG------YPLCPGDVMASNPEWCKSQAEWKDTLR 423 (610)
T ss_pred hHHHHHHHHHHHHHHHHHcC------CCCCCcchhcCCccccCCHHHHHHHHH
Confidence 45888899998888775441 12488776 666 999888887653
No 44
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.34 E-value=82 Score=23.46 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=21.1
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHh
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSSH 34 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~~ 34 (69)
+|.-+|-+||++.-++.|++++...
T Consensus 261 ey~LI~GvNDs~ed~~~l~~~l~~~ 285 (354)
T PRK14460 261 EYLLLGGVNDSLEHARELVRLLSRT 285 (354)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4677788899999999999999654
No 45
>KOG0081|consensus
Probab=25.99 E-value=1.2e+02 Score=21.43 Aligned_cols=34 Identities=12% Similarity=0.254 Sum_probs=27.5
Q ss_pred hhhhcCCCceEEccCCCCCH-HHHHHHHHHHHHhh
Q psy45 2 AEEQLKVDNIRRAAAPNDHP-LFIDALVDIVSSHL 35 (69)
Q Consensus 2 ~A~e~G~~~~~Rvp~LNd~p-~fI~aLadlV~~~l 35 (69)
+|++.|++.|.-..+-+++- .-++.|-|+|.+.+
T Consensus 150 La~kyglPYfETSA~tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 150 LADKYGLPYFETSACTGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred HHHHhCCCeeeeccccCcCHHHHHHHHHHHHHHHH
Confidence 67899999888888877774 56889999998766
No 46
>COG4860 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.75 E-value=53 Score=22.58 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=16.0
Q ss_pred EccCCCCCHHHHHHHHHHH
Q psy45 13 RAAAPNDHPLFIDALVDIV 31 (69)
Q Consensus 13 Rvp~LNd~p~fI~aLadlV 31 (69)
-..+||-+|.||.|++.--
T Consensus 134 vt~~Ln~~p~~iraiakRS 152 (170)
T COG4860 134 VTDTLNISPTLIRAIAKRS 152 (170)
T ss_pred hhhhcCCChHHHHHHHHHh
Confidence 3468999999999998764
No 47
>cd02847 Chitobiase_C_term Chitobiase C-terminus domain. Chitobiase (AKA N-acetylglucosaminidase) digests the beta, 1-4 glycosidic bonds of the N-acetylglucosamine (NAG) oligomers found in chitin, an important structural element of fungal cell wall and arthropod exoskeletons. It is thought to proceed through an acid-base reaction mechanism, in which one protein carboxylate acts as catalytic acid, while the nucleophile is the polar acetamido group of the sugar in a substrate-assisted reaction with retention of the anomeric configuration. The C-terminus of chitobiase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chit
Probab=25.44 E-value=39 Score=20.17 Aligned_cols=13 Identities=23% Similarity=0.537 Sum_probs=10.6
Q ss_pred hhcCCCceEEccCCC
Q psy45 4 EQLKVDNIRRAAAPN 18 (69)
Q Consensus 4 ~e~G~~~~~Rvp~LN 18 (69)
+++|+. | |+|.++
T Consensus 4 d~aGi~-Y-RvP~pg 16 (78)
T cd02847 4 DKAGID-Y-RLPVPG 16 (78)
T ss_pred HhcCCc-c-ccCCCC
Confidence 578994 7 999888
No 48
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=24.95 E-value=37 Score=23.11 Aligned_cols=12 Identities=42% Similarity=0.883 Sum_probs=9.6
Q ss_pred CCCCCCCCCcch
Q psy45 46 LNRCPHCVNPKC 57 (69)
Q Consensus 46 ~~~Cp~c~~~~c 57 (69)
.+|||.|-|.+=
T Consensus 44 ~LRCp~CQNqsI 55 (153)
T COG3088 44 ELRCPQCQNQSI 55 (153)
T ss_pred hcCCCcCCCCCh
Confidence 468999998763
No 49
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.62 E-value=94 Score=23.01 Aligned_cols=25 Identities=20% Similarity=0.225 Sum_probs=22.2
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHh
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSSH 34 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~~ 34 (69)
+|.-+|-.||++.-++.|++++...
T Consensus 250 eyvLI~GvNDs~e~~~~L~~ll~~~ 274 (343)
T PRK14468 250 EYTMLKGVNDHLWQAELLADLLRGL 274 (343)
T ss_pred EEEEeCCCcCCHHHHHHHHHHHhcC
Confidence 5888999999999999999999654
No 50
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=24.43 E-value=42 Score=22.04 Aligned_cols=12 Identities=42% Similarity=0.924 Sum_probs=9.5
Q ss_pred CCCCCCCCCcch
Q psy45 46 LNRCPHCVNPKC 57 (69)
Q Consensus 46 ~~~Cp~c~~~~c 57 (69)
.+|||.|.|.+=
T Consensus 40 ~LRC~vCqnqsi 51 (126)
T PRK10144 40 QLRCPQCQNQNL 51 (126)
T ss_pred cCCCCCCCCCCh
Confidence 468999998763
No 51
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=24.37 E-value=1.5e+02 Score=19.86 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=27.6
Q ss_pred hhcCCCceEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy45 4 EQLKVDNIRRAAAPNDHPLFIDALVDIVSSHLRS 37 (69)
Q Consensus 4 ~e~G~~~~~Rvp~LNd~p~fI~aLadlV~~~l~~ 37 (69)
.++|+. ..|+.....++.++.-+.++..+++..
T Consensus 166 ~~~Gv~-~~rI~~r~~~~~~~~~iv~~Y~~~l~~ 198 (233)
T PF01136_consen 166 KDAGVD-SFRIDGRTESPEYIEEIVKAYREALDN 198 (233)
T ss_pred HHcCCC-EEEEcCccCCHHHHHHHHHHHHHHHHH
Confidence 467995 889999999999999888888777654
No 52
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=24.18 E-value=1.6e+02 Score=17.72 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=24.2
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHhhhcCC
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSSHLRSKT 39 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~~l~~~~ 39 (69)
-|..+.--+..+.+++||+.+|.-.|+++-
T Consensus 26 vf~~~~~~Gg~~~~~~ai~rliS~~Lr~G~ 55 (95)
T PF12637_consen 26 VFINVGKAGGCSGNLEAIARLISLALRSGV 55 (95)
T ss_pred EEEecCcCCCchHHHHHHHHHHHHHHHcCC
Confidence 366666667779999999999988887774
No 53
>PF06935 DUF1284: Protein of unknown function (DUF1284); InterPro: IPR009702 This family consists of several hypothetical bacterial and archaeal proteins of around 130 residues in length. The function of this family is unknown, although it is thought that they may be iron-sulphur binding proteins.
Probab=23.74 E-value=1.1e+02 Score=18.90 Aligned_cols=41 Identities=17% Similarity=0.397 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHhh-hcCC---CC--CcccCCCCCCCCCcchhhh
Q psy45 20 HPLFIDALVDIVSSHL-RSKT---KI--NPKFLNRCPHCVNPKCSQA 60 (69)
Q Consensus 20 ~p~fI~aLadlV~~~l-~~~~---~~--s~q~~~~Cp~c~~~~c~~~ 60 (69)
+|.|++-+..+|.+.. ..+. +. .+-.-..||...+..|...
T Consensus 3 S~~Fv~Nm~~Iv~~l~~~~~~~I~iv~~~DdIC~~CP~~~~~~C~~~ 49 (103)
T PF06935_consen 3 SPEFVENMKKIVERLRNDPGEPIEIVDGPDDICAPCPNNRDGHCESE 49 (103)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEECcCHHHHhCCCCCCCCCCCh
Confidence 7899999999995543 2222 11 2222223887777777743
No 54
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.64 E-value=95 Score=23.03 Aligned_cols=25 Identities=12% Similarity=-0.093 Sum_probs=22.3
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHh
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSSH 34 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~~ 34 (69)
+|.-+|-.||++.-++.|++++...
T Consensus 250 eyvLI~GvNDseeda~~La~llk~l 274 (336)
T PRK14470 250 EYVMISGVNVGEEDAAALGRLLAGI 274 (336)
T ss_pred EEEEEecccCCHHHHHHHHHHHhcC
Confidence 5888999999999999999999643
No 55
>KOG2907|consensus
Probab=22.61 E-value=43 Score=21.89 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHHhhhcCC-CCCcccCCCCCCCCCcc
Q psy45 20 HPLFIDALVDIVSSHLRSKT-KINPKFLNRCPHCVNPK 56 (69)
Q Consensus 20 ~p~fI~aLadlV~~~l~~~~-~~s~q~~~~Cp~c~~~~ 56 (69)
...|..|+...|........ ++-. +||+|-|+.
T Consensus 51 ~~~~~~A~~~~ve~~~~~~ga~I~~----kCpkCghe~ 84 (116)
T KOG2907|consen 51 FDEFTSALAEKVENESSADGAVIKH----KCPKCGHEE 84 (116)
T ss_pred ecccchhhhhhhcccccccccchhc----cCcccCCch
Confidence 34677788887755443322 2222 398887764
No 56
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=22.42 E-value=48 Score=19.01 Aligned_cols=18 Identities=22% Similarity=0.512 Sum_probs=12.0
Q ss_pred cccCCCCCCCCCcchhhh
Q psy45 43 PKFLNRCPHCVNPKCSQA 60 (69)
Q Consensus 43 ~q~~~~Cp~c~~~~c~~~ 60 (69)
.++++-||.|+.++--..
T Consensus 25 kNfPlyCpKCK~EtlI~v 42 (55)
T PF14205_consen 25 KNFPLYCPKCKQETLIDV 42 (55)
T ss_pred ccccccCCCCCceEEEEe
Confidence 355666999988764333
No 57
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=22.06 E-value=40 Score=21.36 Aligned_cols=14 Identities=29% Similarity=0.726 Sum_probs=9.0
Q ss_pred CCCCCCCCCcchhh
Q psy45 46 LNRCPHCVNPKCSQ 59 (69)
Q Consensus 46 ~~~Cp~c~~~~c~~ 59 (69)
+.|||.|+++.=..
T Consensus 76 pSRCP~CKSE~Ie~ 89 (97)
T COG3357 76 PSRCPKCKSEWIEE 89 (97)
T ss_pred cccCCcchhhcccC
Confidence 45699887665433
No 58
>PHA01749 coat protein
Probab=21.88 E-value=35 Score=22.31 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=21.3
Q ss_pred cCCCceEEccCCCCCHHHHHHHHHHHHH
Q psy45 6 LKVDNIRRAAAPNDHPLFIDALVDIVSS 33 (69)
Q Consensus 6 ~G~~~~~Rvp~LNd~p~fI~aLadlV~~ 33 (69)
.|++.| .+-+.|.+|...++..+|+..
T Consensus 101 nglkay-yisafnanp~vldavtniitg 127 (134)
T PHA01749 101 NGLKAY-YISAFNANPQVLDAVVNIITG 127 (134)
T ss_pred hhHHHH-HHHhhcCCcHHHHHHHHhhcC
Confidence 356534 688899999999999999843
No 59
>KOG1321|consensus
Probab=21.80 E-value=1.3e+02 Score=23.34 Aligned_cols=32 Identities=9% Similarity=0.096 Sum_probs=26.6
Q ss_pred hcCCCceEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy45 5 QLKVDNIRRAAAPNDHPLFIDALVDIVSSHLRS 37 (69)
Q Consensus 5 e~G~~~~~Rvp~LNd~p~fI~aLadlV~~~l~~ 37 (69)
+.+++ +.-|+.-..++.+|+++|+.|.+.|.+
T Consensus 188 ~~~~~-wsiIdrW~t~~glIkafA~~I~keL~~ 219 (395)
T KOG1321|consen 188 ERDIK-WSIIDRWPTREGLIKAFAENIEKELQT 219 (395)
T ss_pred ccCCc-eEeeccccccchHHHHHHHHHHHHHHh
Confidence 45563 778899999999999999999988843
No 60
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=21.65 E-value=2e+02 Score=18.07 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=20.7
Q ss_pred hhhcCCCceEEccCCCC--CHHHHHHHHHHHH
Q psy45 3 EEQLKVDNIRRAAAPND--HPLFIDALVDIVS 32 (69)
Q Consensus 3 A~e~G~~~~~Rvp~LNd--~p~fI~aLadlV~ 32 (69)
+.+.|+. |..+|.... ++.=++++.+++.
T Consensus 53 a~~~gl~-y~~iPv~~~~~~~~~v~~f~~~~~ 83 (135)
T TIGR01244 53 AEAAGVT-YHHQPVTAGDITPDDVETFRAAIG 83 (135)
T ss_pred HHHCCCe-EEEeecCCCCCCHHHHHHHHHHHH
Confidence 3567994 999998776 3556777777763
No 61
>PTZ00062 glutaredoxin; Provisional
Probab=21.19 E-value=1.7e+02 Score=20.28 Aligned_cols=38 Identities=11% Similarity=0.181 Sum_probs=23.8
Q ss_pred HHHHHHHhhhcCC--CCCcccCCCCCCCCCcchhhhHHHHhhh
Q psy45 27 LVDIVSSHLRSKT--KINPKFLNRCPHCVNPKCSQAKQWFSQL 67 (69)
Q Consensus 27 LadlV~~~l~~~~--~~s~q~~~~Cp~c~~~~c~~~~~~f~~~ 67 (69)
+.+.|.+.+.+.+ +.++- ...||.| |-|+.+++++...
T Consensus 102 ~~~~v~~li~~~~Vvvf~Kg-~~~~p~C--~~C~~~k~~L~~~ 141 (204)
T PTZ00062 102 TVEKIERLIRNHKILLFMKG-SKTFPFC--RFSNAVVNMLNSS 141 (204)
T ss_pred HHHHHHHHHhcCCEEEEEcc-CCCCCCC--hhHHHHHHHHHHc
Confidence 4445555556666 34553 2237777 5689999998764
No 62
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.14 E-value=1.3e+02 Score=22.45 Aligned_cols=25 Identities=20% Similarity=0.046 Sum_probs=22.2
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHh
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSSH 34 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~~ 34 (69)
+|.-++-+||++.-++.|++++...
T Consensus 254 eyvLI~GvNDs~e~~~~L~~ll~~l 278 (349)
T PRK14463 254 EYVMIRGLNDSLEDAKRLVRLLSDI 278 (349)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhcc
Confidence 4888999999999999999999653
No 63
>PRK13844 recombination protein RecR; Provisional
Probab=20.42 E-value=2.4e+02 Score=19.80 Aligned_cols=40 Identities=15% Similarity=0.078 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHHHHhhhcCCCCCcccCC----CCCCCCCcc
Q psy45 17 PNDHPLFIDALVDIVSSHLRSKTKINPKFLN----RCPHCVNPK 56 (69)
Q Consensus 17 LNd~p~fI~aLadlV~~~l~~~~~~s~q~~~----~Cp~c~~~~ 56 (69)
|..++..++.|++.+......-..|+..... -|+=|.+++
T Consensus 36 L~~~~~~~~~la~~i~~~~~~i~~C~~C~~lte~~~C~IC~d~~ 79 (200)
T PRK13844 36 LDKSPETAIAIANSLLDATANIKKCVYCQALTEDDVCNICSNTN 79 (200)
T ss_pred HcCCHHHHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCCCCCCC
Confidence 4567888888988887665554444332111 177776554
No 64
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=20.26 E-value=51 Score=18.20 Aligned_cols=10 Identities=50% Similarity=1.212 Sum_probs=4.7
Q ss_pred CCCCCCCCCc
Q psy45 46 LNRCPHCVNP 55 (69)
Q Consensus 46 ~~~Cp~c~~~ 55 (69)
..+||+|..|
T Consensus 37 ~g~CPgCr~~ 46 (48)
T PF14570_consen 37 GGRCPGCREP 46 (48)
T ss_dssp -SB-TTT--B
T ss_pred CCCCCCCCCC
Confidence 5679999754
No 65
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=20.07 E-value=57 Score=21.39 Aligned_cols=12 Identities=42% Similarity=0.910 Sum_probs=9.4
Q ss_pred CCCCCCCCCcch
Q psy45 46 LNRCPHCVNPKC 57 (69)
Q Consensus 46 ~~~Cp~c~~~~c 57 (69)
.+|||.|.|.+-
T Consensus 40 ~LRC~vCqnqsi 51 (126)
T TIGR03147 40 SLRCPQCQNQNL 51 (126)
T ss_pred hCCCCCCCCCCh
Confidence 468999998763
Done!