Query psy45
Match_columns 69
No_of_seqs 100 out of 408
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 18:46:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy45.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/45hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hcn_A Ferrochelatase, mitocho 99.8 4.1E-21 1.4E-25 140.5 6.4 68 2-69 292-359 (359)
2 1lbq_A Ferrochelatase; rossman 99.6 3.2E-17 1.1E-21 119.8 1.3 65 2-68 295-360 (362)
3 2h1v_A Ferrochelatase; rossman 98.2 6.5E-07 2.2E-11 63.5 3.5 34 2-36 276-309 (310)
4 2xvy_A Chelatase, putative; me 96.6 0.00098 3.4E-08 45.3 2.4 34 3-36 233-266 (269)
5 2jh3_A Ribosomal protein S2-re 88.7 0.21 7.1E-06 37.5 2.2 32 6-38 237-268 (474)
6 2h1v_A Ferrochelatase; rossman 86.3 0.93 3.2E-05 31.7 4.3 28 9-36 139-166 (310)
7 1lbq_A Ferrochelatase; rossman 85.2 0.93 3.2E-05 32.7 3.9 28 10-37 161-188 (362)
8 2xwp_A Sirohydrochlorin cobalt 83.7 0.74 2.5E-05 31.2 2.7 33 4-36 225-257 (264)
9 3hcn_A Ferrochelatase, mitocho 82.7 1.4 4.7E-05 32.0 3.9 28 10-37 156-183 (359)
10 3lyh_A Cobalamin (vitamin B12) 82.2 1.2 4.2E-05 26.6 3.0 31 7-38 94-124 (126)
11 2xws_A Sirohydrochlorin cobalt 64.7 5.7 0.0002 23.5 2.8 26 10-35 101-126 (133)
12 2xvy_A Chelatase, putative; me 64.5 6.9 0.00024 26.0 3.5 28 9-36 113-140 (269)
13 1tjn_A Sirohydrochlorin cobalt 57.2 9 0.00031 23.9 2.9 27 10-36 122-148 (156)
14 3gx8_A Monothiol glutaredoxin- 50.0 22 0.00074 21.1 3.7 37 28-67 6-44 (121)
15 3ipz_A Monothiol glutaredoxin- 48.9 21 0.00073 20.5 3.5 41 20-67 4-46 (109)
16 2wem_A Glutaredoxin-related pr 47.5 11 0.00037 22.6 2.0 38 27-67 9-48 (118)
17 3fyr_A Sporulation inhibitor S 47.2 5.5 0.00019 21.4 0.6 24 10-33 14-37 (48)
18 3mmj_A MYO-inositol hexaphosph 42.7 17 0.00058 25.9 2.7 31 2-33 176-209 (314)
19 2jh3_A Ribosomal protein S2-re 30.4 18 0.00062 27.0 1.2 28 10-37 109-136 (474)
20 2cks_A Endoglucanase E-5; carb 28.5 47 0.0016 22.1 3.0 35 3-38 52-93 (306)
21 1g01_A Endoglucanase; alpha/be 27.5 39 0.0013 23.2 2.5 34 4-38 64-103 (364)
22 2kw0_A CCMH protein; oxidoredu 26.0 26 0.0009 20.8 1.2 11 46-56 23-33 (90)
23 2oqp_A Interleukin-21, IL-21, 26.0 91 0.0031 19.8 3.8 50 18-68 62-113 (134)
24 3v9r_A MHF1, uncharacterized p 23.8 69 0.0024 18.8 2.8 18 17-34 31-48 (90)
25 3nco_A Endoglucanase fncel5A; 23.6 96 0.0033 20.5 3.8 35 3-38 50-95 (320)
26 7a3h_A Endoglucanase; hydrolas 21.8 70 0.0024 21.3 2.9 34 4-38 54-93 (303)
27 3rfa_A Ribosomal RNA large sub 21.0 57 0.0019 23.7 2.4 24 10-33 278-301 (404)
28 2hl7_A Cytochrome C-type bioge 20.4 28 0.00094 20.4 0.5 11 46-56 26-36 (84)
No 1
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=99.83 E-value=4.1e-21 Score=140.52 Aligned_cols=68 Identities=38% Similarity=0.689 Sum_probs=64.5
Q ss_pred hhhhcCCCceEEccCCCCCHHHHHHHHHHHHHhhhcCCCCCcccCCCCCCCCCcchhhhHHHHhhhhC
Q psy45 2 AEEQLKVDNIRRAAAPNDHPLFIDALVDIVSSHLRSKTKINPKFLNRCPHCVNPKCSQAKQWFSQLCA 69 (69)
Q Consensus 2 ~A~e~G~~~~~Rvp~LNd~p~fI~aLadlV~~~l~~~~~~s~q~~~~Cp~c~~~~c~~~~~~f~~~~~ 69 (69)
+|.++|+++|.|+|+|||+|.||++|+++|.+++.+++.+|.|+.++||+|+|++|..+|+||+++|.
T Consensus 292 ~a~e~G~~~~~rip~LNd~p~fi~~La~lv~~~l~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~ 359 (359)
T 3hcn_A 292 LAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTSQQL 359 (359)
T ss_dssp HHHHTCCCEEEECCCSTTCHHHHHHHHHHHHHHHHHTCSSCGGGGSCCTTCCCHHHHHHHHHHHTSCC
T ss_pred HHHhCCCceEEEcCCCCCCHHHHHHHHHHHHHHHhcCCccCcccCCCCCCCCchhhHHHHHHHhhcCC
Confidence 46799998899999999999999999999999999999999999999999999999999999999874
No 2
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=99.63 E-value=3.2e-17 Score=119.80 Aligned_cols=65 Identities=20% Similarity=0.238 Sum_probs=60.2
Q ss_pred hhhhcCCCceEEccCCCCCHHHHHHHHHHHHHhhhcCCCCCcccCCCCCCC-CCcchhhhHHHHhhhh
Q psy45 2 AEEQLKVDNIRRAAAPNDHPLFIDALVDIVSSHLRSKTKINPKFLNRCPHC-VNPKCSQAKQWFSQLC 68 (69)
Q Consensus 2 ~A~e~G~~~~~Rvp~LNd~p~fI~aLadlV~~~l~~~~~~s~q~~~~Cp~c-~~~~c~~~~~~f~~~~ 68 (69)
+|.++|+ |.|+|+|||+|.||++|+++|.+++.+...+|.|+.++||+| +|++|+.+|+||+.++
T Consensus 295 ~~~~~G~--~~~~p~Ln~~p~fi~~L~~lv~~~l~~~~~~~~~~~~~C~~c~~~~~~~~~~~~~~~~~ 360 (362)
T 1lbq_A 295 ESEYKDK--FKRCESLNGNQTFIEGMADLVKSHLQSNQLYSNQLPLDFALGKSNDPVKDLSLVFGNHE 360 (362)
T ss_dssp TCTTGGG--EEECCCCTTCHHHHHHHHHHHHHHHHHCCSSCTTHHHHHHHCCCSSCCSCHHHHSBCCC
T ss_pred HHHhCCC--EEEcCCCCCCHHHHHHHHHHHHHHhccCCCcccccCCCCCCCCcCchhhhHHHHhhccc
Confidence 4678894 999999999999999999999999998889999988889999 7999999999999875
No 3
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=98.24 E-value=6.5e-07 Score=63.50 Aligned_cols=34 Identities=32% Similarity=0.539 Sum_probs=30.1
Q ss_pred hhhhcCCCceEEccCCCCCHHHHHHHHHHHHHhhh
Q psy45 2 AEEQLKVDNIRRAAAPNDHPLFIDALVDIVSSHLR 36 (69)
Q Consensus 2 ~A~e~G~~~~~Rvp~LNd~p~fI~aLadlV~~~l~ 36 (69)
++.++|+ +|.|+|+||++|.||++|+++|.+++.
T Consensus 276 ~~~~~G~-~~~~~p~ln~~p~~i~~l~~~v~~~l~ 309 (310)
T 2h1v_A 276 VTDDIGA-SYYRPEMPNAKPEFIDALATVVLKKLG 309 (310)
T ss_dssp HHHHHTC-EEECCCCCTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHcCC-eEEECCCCCCCHHHHHHHHHHHHHHhc
Confidence 4678997 599999999999999999999988763
No 4
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=96.62 E-value=0.00098 Score=45.28 Aligned_cols=34 Identities=3% Similarity=-0.027 Sum_probs=29.0
Q ss_pred hhhcCCCceEEccCCCCCHHHHHHHHHHHHHhhh
Q psy45 3 EEQLKVDNIRRAAAPNDHPLFIDALVDIVSSHLR 36 (69)
Q Consensus 3 A~e~G~~~~~Rvp~LNd~p~fI~aLadlV~~~l~ 36 (69)
+.++|++.+.++|+||++|.|++.|++.+.+++.
T Consensus 233 ~~~~g~~~~~~~~~Lg~~p~~~~~l~~~~~~a~~ 266 (269)
T 2xvy_A 233 LARRGIEAKPVLHGTAESDAVAAIWLRHLDDALA 266 (269)
T ss_dssp HHHTTCEEEECCCCGGGCHHHHHHHHHHHHHHHH
T ss_pred HHHcCcEEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence 3477997666999999999999999999987763
No 5
>2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural genomics, chelatase super-family fold, 4Fe-4S iron-sulphur cluster; 1.9A {Deinococcus radiodurans}
Probab=88.73 E-value=0.21 Score=37.51 Aligned_cols=32 Identities=6% Similarity=0.208 Sum_probs=27.8
Q ss_pred cCCCceEEccCCCCCHHHHHHHHHHHHHhhhcC
Q psy45 6 LKVDNIRRAAAPNDHPLFIDALVDIVSSHLRSK 38 (69)
Q Consensus 6 ~G~~~~~Rvp~LNd~p~fI~aLadlV~~~l~~~ 38 (69)
.|+ .|.+++.||++|.|++.|++.|.+++...
T Consensus 237 ~G~-~v~~~~~LG~~p~~~~ll~~rv~eal~~~ 268 (474)
T 2jh3_A 237 QAP-PLHVGGPVGEHPAVAEVVLALAAEGREDE 268 (474)
T ss_dssp TCC-CEEECCCGGGSTTHHHHHHHHHHTTCSCS
T ss_pred CCc-EEEecCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 477 59999999999999999999998877544
No 6
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=86.32 E-value=0.93 Score=31.71 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=25.3
Q ss_pred CceEEccCCCCCHHHHHHHHHHHHHhhh
Q psy45 9 DNIRRAAAPNDHPLFIDALVDIVSSHLR 36 (69)
Q Consensus 9 ~~~~Rvp~LNd~p~fI~aLadlV~~~l~ 36 (69)
..+.-++.+.++|.||+++++.|.+++.
T Consensus 139 ~~i~~i~~~~~~p~~i~a~a~~i~~~l~ 166 (310)
T 2h1v_A 139 LTITSVESWYDEPKFVTYWVDRVKETYA 166 (310)
T ss_dssp CEEEECCCCTTCHHHHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999988774
No 7
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=85.18 E-value=0.93 Score=32.75 Aligned_cols=28 Identities=11% Similarity=0.078 Sum_probs=24.7
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSSHLRS 37 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~~l~~ 37 (69)
.+..++...++|.||++|++.|.+++..
T Consensus 161 ~i~~i~~~~~~p~~I~ala~~I~~~l~~ 188 (362)
T 1lbq_A 161 SWSVIDRWPTNEGLIKAFSENITKKLQE 188 (362)
T ss_dssp EEEEECCCTTCHHHHHHHHHHHHHHHHT
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 3668999999999999999999888754
No 8
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=83.72 E-value=0.74 Score=31.15 Aligned_cols=33 Identities=9% Similarity=0.123 Sum_probs=27.6
Q ss_pred hhcCCCceEEccCCCCCHHHHHHHHHHHHHhhh
Q psy45 4 EQLKVDNIRRAAAPNDHPLFIDALVDIVSSHLR 36 (69)
Q Consensus 4 ~e~G~~~~~Rvp~LNd~p~fI~aLadlV~~~l~ 36 (69)
.+.|++.+..++.||++|.+++.+.+-+.+.+.
T Consensus 225 ~~~g~~~~~~~~~LG~~p~i~~~~~~r~~ea~~ 257 (264)
T 2xwp_A 225 NAAGIPATPWLSGLGENPAIRAMFVAHLHQALN 257 (264)
T ss_dssp HHTTCCEEECCCCGGGCHHHHHHHHHHHHHHHC
T ss_pred HHcCCeEEEeccCCCCCHHHHHHHHHHHHHHHh
Confidence 366886556789999999999999999988764
No 9
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=82.73 E-value=1.4 Score=31.95 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=25.1
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSSHLRS 37 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~~l~~ 37 (69)
.+.-++...++|.||+++++.|.+++..
T Consensus 156 ~~~~i~~~~~~p~yI~a~a~~I~~~l~~ 183 (359)
T 3hcn_A 156 KWSTIDRWPTHHLLIQCFADHILKELDH 183 (359)
T ss_dssp EEEEECCCTTCHHHHHHHHHHHHHHHTT
T ss_pred ceEEeCCccCCHHHHHHHHHHHHHHHHh
Confidence 4778999999999999999999988854
No 10
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=82.19 E-value=1.2 Score=26.63 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=26.4
Q ss_pred CCCceEEccCCCCCHHHHHHHHHHHHHhhhcC
Q psy45 7 KVDNIRRAAAPNDHPLFIDALVDIVSSHLRSK 38 (69)
Q Consensus 7 G~~~~~Rvp~LNd~p~fI~aLadlV~~~l~~~ 38 (69)
|+ .+...+.|+.+|.+++.|++.+.+++.+.
T Consensus 94 ~~-~i~~~~~LG~~p~l~~~l~~ri~~al~~~ 124 (126)
T 3lyh_A 94 GV-TIRLAEPIGKNPRLGLAIRDVVKEELERS 124 (126)
T ss_dssp TC-EEEECCCGGGSHHHHHHHHHHHHHHHHHC
T ss_pred Cc-eEEEcCCCCCChHHHHHHHHHHHHHHhcc
Confidence 66 47788999999999999999998887543
No 11
>2xws_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; 1.60A {Archaeoglobus fulgidus} PDB: 2dj5_A* 2xwq_A
Probab=64.65 E-value=5.7 Score=23.48 Aligned_cols=26 Identities=8% Similarity=-0.023 Sum_probs=22.3
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHhh
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSSHL 35 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~~l 35 (69)
.+.-.+.|+++|.+++.|++.+.+++
T Consensus 101 ~i~~~~pLg~~p~~~~~l~~ri~~a~ 126 (133)
T 2xws_A 101 KVVICEPIGEDYFVTYAILNSVFRIG 126 (133)
T ss_dssp EEEECCCSTTSHHHHHHHHHHHHCCC
T ss_pred eEEEcCCCCCCHHHHHHHHHHHHHhh
Confidence 46678999999999999999997665
No 12
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=64.46 E-value=6.9 Score=26.01 Aligned_cols=28 Identities=7% Similarity=0.036 Sum_probs=24.7
Q ss_pred CceEEccCCCCCHHHHHHHHHHHHHhhh
Q psy45 9 DNIRRAAAPNDHPLFIDALVDIVSSHLR 36 (69)
Q Consensus 9 ~~~~Rvp~LNd~p~fI~aLadlV~~~l~ 36 (69)
..+.-++.+.++|.+|++|++.+.+++.
T Consensus 113 ~~i~~~~pl~~~p~~i~~la~~i~~~~~ 140 (269)
T 2xvy_A 113 TRVSVGLPLIGTTADAEAVAEALVASLP 140 (269)
T ss_dssp SEEEEECCSSCSHHHHHHHHHHHHHHSC
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHhch
Confidence 4577889999999999999999988874
No 13
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} SCOP: c.92.1.3
Probab=57.23 E-value=9 Score=23.87 Aligned_cols=27 Identities=11% Similarity=0.036 Sum_probs=22.6
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHhhh
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSSHLR 36 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~~l~ 36 (69)
.+.-.+-|+++|.+++.|++.+.+++.
T Consensus 122 ~i~~~~pLG~~p~l~~~l~~ri~ea~~ 148 (156)
T 1tjn_A 122 KVVICEPIGEDYFVTYAILNSVFRIGR 148 (156)
T ss_dssp EEEECCCSTTCHHHHHHHHHHHHCCC-
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 466789999999999999999977653
No 14
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=50.01 E-value=22 Score=21.12 Aligned_cols=37 Identities=8% Similarity=0.101 Sum_probs=23.3
Q ss_pred HHHHHHhhhcCC--CCCcccCCCCCCCCCcchhhhHHHHhhh
Q psy45 28 VDIVSSHLRSKT--KINPKFLNRCPHCVNPKCSQAKQWFSQL 67 (69)
Q Consensus 28 adlV~~~l~~~~--~~s~q~~~~Cp~c~~~~c~~~~~~f~~~ 67 (69)
.+.|.+.+.+.. +.|+. ...||.| |-|+..+++|..+
T Consensus 6 ~~~v~~~i~~~~Vvvfsk~-t~~~p~C--p~C~~ak~lL~~~ 44 (121)
T 3gx8_A 6 RKAIEDAIESAPVVLFMKG-TPEFPKC--GFSRATIGLLGNQ 44 (121)
T ss_dssp HHHHHHHHHSCSEEEEESB-CSSSBCT--THHHHHHHHHHHH
T ss_pred HHHHHHHhccCCEEEEEec-cCCCCCC--ccHHHHHHHHHHc
Confidence 344555556666 44554 2237777 6789999998764
No 15
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=48.86 E-value=21 Score=20.49 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHhhhcCC--CCCcccCCCCCCCCCcchhhhHHHHhhh
Q psy45 20 HPLFIDALVDIVSSHLRSKT--KINPKFLNRCPHCVNPKCSQAKQWFSQL 67 (69)
Q Consensus 20 ~p~fI~aLadlV~~~l~~~~--~~s~q~~~~Cp~c~~~~c~~~~~~f~~~ 67 (69)
+|...+-+.++| .+.. +.|+. ...+|.| |-|+..++||..+
T Consensus 4 s~~~~~~v~~~i----~~~~Vvvy~k~-t~~~p~C--p~C~~ak~~L~~~ 46 (109)
T 3ipz_A 4 TPQLKDTLEKLV----NSEKVVLFMKG-TRDFPMC--GFSNTVVQILKNL 46 (109)
T ss_dssp CHHHHHHHHHHH----TSSSEEEEESB-CSSSBSS--HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHH----ccCCEEEEEec-CCCCCCC--hhHHHHHHHHHHc
Confidence 444444444444 5555 44554 2235677 6789999999764
No 16
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=47.52 E-value=11 Score=22.59 Aligned_cols=38 Identities=8% Similarity=0.087 Sum_probs=24.4
Q ss_pred HHHHHHHhhhcCC--CCCcccCCCCCCCCCcchhhhHHHHhhh
Q psy45 27 LVDIVSSHLRSKT--KINPKFLNRCPHCVNPKCSQAKQWFSQL 67 (69)
Q Consensus 27 LadlV~~~l~~~~--~~s~q~~~~Cp~c~~~~c~~~~~~f~~~ 67 (69)
+.+.|.+.+.+.+ +.|+. ...+|.| |-|...|++|..+
T Consensus 9 ~~~~v~~~i~~~~Vvvfsk~-t~~~p~C--p~C~~ak~lL~~~ 48 (118)
T 2wem_A 9 SAEQLDALVKKDKVVVFLKG-TPEQPQC--GFSNAVVQILRLH 48 (118)
T ss_dssp CHHHHHHHHHHSSEEEEESB-CSSSBSS--HHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCEEEEEec-CCCCCcc--HHHHHHHHHHHHc
Confidence 4455655556666 44554 2236777 6789999998765
No 17
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=47.23 E-value=5.5 Score=21.42 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=18.9
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHH
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSS 33 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~ 33 (69)
.|.++--+|-+++||+-|.+-+.+
T Consensus 14 sY~~A~el~L~~dFI~LL~~Ei~R 37 (48)
T 3fyr_A 14 SYFKATEMNLNRDFIELIENEIKR 37 (48)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 466677789999999999766644
No 18
>3mmj_A MYO-inositol hexaphosphate phosphohydrolase; phytase, protein tyrosine phosphatase, inositol phosphate, I phosphatase; HET: IHP; 1.60A {Selenomonas ruminantium} SCOP: c.45.1.4 PDB: 1u24_A 1u25_A* 1u26_A* 3o3l_A* 3moz_A* 2pt0_A 2psz_A 3d1h_A 3d1o_A 3d1q_A 2b4u_A 2b4p_A 2b4o_A
Probab=42.68 E-value=17 Score=25.94 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=24.5
Q ss_pred hhhhcCCCceEEccCCCC---CHHHHHHHHHHHHH
Q psy45 2 AEEQLKVDNIRRAAAPND---HPLFIDALVDIVSS 33 (69)
Q Consensus 2 ~A~e~G~~~~~Rvp~LNd---~p~fI~aLadlV~~ 33 (69)
++...|+ .|.|+|.... .+.+++.+.++|..
T Consensus 176 ~~~~~Gl-~Y~rlPi~D~~aP~~e~id~fl~~v~~ 209 (314)
T 3mmj_A 176 VAEAAGM-RYFRIAATDHVWPTPENIDRFLAFYRT 209 (314)
T ss_dssp HHHHTTC-EEEEEEECTTSCCCHHHHHHHHHHHHT
T ss_pred HHHhCCC-EEEEeCcCCCCCCCHHHHHHHHHHHHH
Confidence 4568999 5999999885 67788888888855
No 19
>2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural genomics, chelatase super-family fold, 4Fe-4S iron-sulphur cluster; 1.9A {Deinococcus radiodurans}
Probab=30.36 E-value=18 Score=26.98 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=24.8
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHhhhc
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSSHLRS 37 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~~l~~ 37 (69)
.+.-++.|.++|.++++|++.|.+++..
T Consensus 109 ~I~~~~pLG~~P~lie~la~rI~eal~~ 136 (474)
T 2jh3_A 109 RVRYTRPLGAHPGMADAIAAQARDTLPE 136 (474)
T ss_dssp EEEECCCGGGSTTHHHHHHHHHHHHSCT
T ss_pred eEEEeCccCCCHHHHHHHHHHHHHHHhh
Confidence 5788999999999999999999887754
No 20
>2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide degradation, glycoside hydrolase family 5, hydrolase, glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB: 2ckr_A*
Probab=28.47 E-value=47 Score=22.06 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=24.4
Q ss_pred hhhcCCCceEEccCC------CCCHH-HHHHHHHHHHHhhhcC
Q psy45 3 EEQLKVDNIRRAAAP------NDHPL-FIDALVDIVSSHLRSK 38 (69)
Q Consensus 3 A~e~G~~~~~Rvp~L------Nd~p~-fI~aLadlV~~~l~~~ 38 (69)
+++.|+ +.+|+|.. ..+|. |.+-|-.+|..+.+.+
T Consensus 52 ~~~~G~-N~vRi~~~~~~~~~~~~~~~~l~~ld~~v~~a~~~G 93 (306)
T 2cks_A 52 AYDWKA-DIIRLSMYIQEDGYETNPRGFTDRMHQLIDMATARG 93 (306)
T ss_dssp HHTSCC-SEEEEEEESSTTSGGGCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHcCC-CEEEEEeeecCCCcccCHHHHHHHHHHHHHHHHHCC
Confidence 356899 69999863 24565 8888888886654444
No 21
>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A*
Probab=27.47 E-value=39 Score=23.24 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=25.3
Q ss_pred hhcCCCceEEccCC------CCCHHHHHHHHHHHHHhhhcC
Q psy45 4 EQLKVDNIRRAAAP------NDHPLFIDALVDIVSSHLRSK 38 (69)
Q Consensus 4 ~e~G~~~~~Rvp~L------Nd~p~fI~aLadlV~~~l~~~ 38 (69)
++.|+ +.+|+|.- ..+|.+++.|-++|..+.+.+
T Consensus 64 ~~~G~-N~VRip~~~~~~~~~~~~~~l~~ld~~v~~a~~~G 103 (364)
T 1g01_A 64 NDWGS-NMIRLAMYIGENGYATNPEVKDLVYEGIELAFEHD 103 (364)
T ss_dssp TTSCC-SEEEEEEESSSSSTTTCTTHHHHHHHHHHHHHHTT
T ss_pred HHCCC-CEEEEEeeeCCCCCccCHHHHHHHHHHHHHHHHCC
Confidence 47899 69999865 356778888888886665544
No 22
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=26.05 E-value=26 Score=20.82 Aligned_cols=11 Identities=45% Similarity=0.957 Sum_probs=8.6
Q ss_pred CCCCCCCCCcc
Q psy45 46 LNRCPHCVNPK 56 (69)
Q Consensus 46 ~~~Cp~c~~~~ 56 (69)
.+|||.|-|.+
T Consensus 23 ~LRCpvCqnqs 33 (90)
T 2kw0_A 23 ELRCPKCQNNS 33 (90)
T ss_dssp SSBCSCTTSCT
T ss_pred cCcCCCCCCCc
Confidence 46899998865
No 23
>2oqp_A Interleukin-21, IL-21, ZA11; four helix bundle, cytokine, multiple conformers; NMR {Homo sapiens} SCOP: a.26.1.2 PDB: 3tgx_B*
Probab=26.00 E-value=91 Score=19.83 Aligned_cols=50 Identities=12% Similarity=0.273 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHHhhhcC-C-CCCcccCCCCCCCCCcchhhhHHHHhhhh
Q psy45 18 NDHPLFIDALVDIVSSHLRSK-T-KINPKFLNRCPHCVNPKCSQAKQWFSQLC 68 (69)
Q Consensus 18 Nd~p~fI~aLadlV~~~l~~~-~-~~s~q~~~~Cp~c~~~~c~~~~~~f~~~~ 68 (69)
+.+..||..+..-+.+.+... . .-... ...||.|..-.=+..++||..|.
T Consensus 62 ~~n~~~~~~~~k~Lkr~L~~tn~~~~~~~-~~~CpsCeSYp~k~~~eFlerL~ 113 (134)
T 2oqp_A 62 GNNERIINVSIKKLKRKPPSTNAGRRQKH-RLTCPSCDSYEKKPPKEFLERFK 113 (134)
T ss_dssp SSSHHHHHHHHHHHSCCCSSSSSCSSSCS-SCCCCCSTTSCEECHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccCCccccccccc-CCCCCCccccCcCCHHHHHHHHH
Confidence 678888887766665444221 1 11111 12499998777788899988763
No 24
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=23.78 E-value=69 Score=18.80 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy45 17 PNDHPLFIDALVDIVSSH 34 (69)
Q Consensus 17 LNd~p~fI~aLadlV~~~ 34 (69)
.+-+|.||.+|++++.+-
T Consensus 31 ~~vs~~~i~aL~e~~~~~ 48 (90)
T 3v9r_A 31 IKYTPRFINSLLELAYLQ 48 (90)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred ceeCHHHHHHHHHHHHHH
Confidence 468999999999999654
No 25
>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A*
Probab=23.63 E-value=96 Score=20.53 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=24.9
Q ss_pred hhhcCCCceEEccC-----------CCCCHHHHHHHHHHHHHhhhcC
Q psy45 3 EEQLKVDNIRRAAA-----------PNDHPLFIDALVDIVSSHLRSK 38 (69)
Q Consensus 3 A~e~G~~~~~Rvp~-----------LNd~p~fI~aLadlV~~~l~~~ 38 (69)
.+++|+ +.+|+|. -.-++.+++-|-++|..+.+.+
T Consensus 50 l~~~G~-n~vRi~i~w~~~~~~~~~~~~~~~~~~~~d~~v~~a~~~G 95 (320)
T 3nco_A 50 IKERGF-DSVRIPIRWSAHISEKYPYEIDKFFLDRVKHVVDVALKND 95 (320)
T ss_dssp HHHHTC-CEEEECCCGGGSBCSSTTCCBCHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCC-CEEEEeeehHHhcCCCCCCccCHHHHHHHHHHHHHHHHCC
Confidence 468999 5999985 1346777888888886665544
No 26
>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A
Probab=21.84 E-value=70 Score=21.32 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=24.1
Q ss_pred hhcCCCceEEccCCC------CCHHHHHHHHHHHHHhhhcC
Q psy45 4 EQLKVDNIRRAAAPN------DHPLFIDALVDIVSSHLRSK 38 (69)
Q Consensus 4 ~e~G~~~~~Rvp~LN------d~p~fI~aLadlV~~~l~~~ 38 (69)
++.|+ +.+|+|.-- .+|.+.+.|-.+|..+.+.+
T Consensus 54 ~~~G~-N~VRip~~~~~~~~~~~~~~~~~ld~~v~~a~~~G 93 (303)
T 7a3h_A 54 DDWGI-NVFRAAMYTSSGGYIDDPSVKEKVKEAVEAAIDLD 93 (303)
T ss_dssp HHTCC-CEEEEEEESSTTSTTTCTTHHHHHHHHHHHHHHHT
T ss_pred HhcCC-CEEEEEEEeCCCCccCCHHHHHHHHHHHHHHHHCC
Confidence 46899 699998732 25668888888886665544
No 27
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=20.96 E-value=57 Score=23.73 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=20.6
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHH
Q psy45 10 NIRRAAAPNDHPLFIDALVDIVSS 33 (69)
Q Consensus 10 ~~~Rvp~LNd~p~fI~aLadlV~~ 33 (69)
+|.-+|-+||++.-++.|++++..
T Consensus 278 e~vLI~GvNDs~e~~~~La~ll~~ 301 (404)
T 3rfa_A 278 EYVMLDHVNDGTEHAHQLAELLKD 301 (404)
T ss_dssp EEEEBTTTTCSHHHHHHHHHHTTT
T ss_pred EEEEecCCCCCHHHHHHHHHHHHc
Confidence 366789999999999999999854
No 28
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=20.43 E-value=28 Score=20.38 Aligned_cols=11 Identities=45% Similarity=0.990 Sum_probs=8.4
Q ss_pred CCCCCCCCCcc
Q psy45 46 LNRCPHCVNPK 56 (69)
Q Consensus 46 ~~~Cp~c~~~~ 56 (69)
.+|||.|-|.+
T Consensus 26 ~LRCp~Cqnqs 36 (84)
T 2hl7_A 26 ELRCPKCQNQD 36 (84)
T ss_dssp HEECTTSSSCB
T ss_pred cCcCCCCCCCc
Confidence 36899998865
Done!