RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy45
         (69 letters)



>d2hrca1 c.92.1.1 (A:65-423) Ferrochelatase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 359

 Score = 69.9 bits (170), Expect = 9e-17
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query: 4   EQLKVDNIRRAAAPNDHPLFIDALVDIVSSHLRSKTKINPKFLNRCPHCVNPKCSQAKQW 63
           ++  V+NIRRA + N +PLF  AL D+V SH++S    + +    CP CVNP C + K +
Sbjct: 294 KECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSF 353

Query: 64  FS 65
           F+
Sbjct: 354 FT 355


>d1lbqa_ c.92.1.1 (A:) Ferrochelatase {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 356

 Score = 50.2 bits (119), Expect = 9e-10
 Identities = 12/54 (22%), Positives = 23/54 (42%)

Query: 1   MAEEQLKVDNIRRAAAPNDHPLFIDALVDIVSSHLRSKTKINPKFLNRCPHCVN 54
           +  E    D  +R  + N +  FI+ + D+V SHL+S    + +         +
Sbjct: 288 VIGESEYKDKFKRCESLNGNQTFIEGMADLVKSHLQSNQLYSNQLPLDFALGKS 341


>d2hk6a1 c.92.1.1 (A:2-310) Ferrochelatase {Bacillus subtilis
           [TaxId: 1423]}
          Length = 309

 Score = 38.6 bits (89), Expect = 1e-05
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 10  NIRRAAAPNDHPLFIDALVDIVSSHL 35
           +  R   PN  P FIDAL  +V   L
Sbjct: 282 SYYRPEMPNAKPEFIDALATVVLKKL 307


>d5csma_ a.130.1.2 (A:) Allosteric chorismate mutase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 256

 Score = 26.2 bits (58), Expect = 0.28
 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 5/44 (11%)

Query: 11  IRRAAAPNDHPLFIDALVDIVSSHLRSKTKINPKFLNRCPHCVN 54
           IRR  +P++ P F D +       +       P+ L      VN
Sbjct: 74  IRRFESPDETPFFPDKIQKSFLPSINY-----PQILAPYAPEVN 112


>d3c7ba1 d.58.1.5 (A:239-304) DsrA insert domain {Archaeoglobus
          fulgidus [TaxId: 2234]}
          Length = 66

 Score = 23.8 bits (52), Expect = 1.2
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 38 KTKINPKFLNRCPHCVN 54
          +  I+ +   RC HC+N
Sbjct: 39 ELTIDNRECVRCMHCIN 55


>d2v4ja1 d.58.1.5 (A:242-322) DsrA insert domain {Desulfovibrio
          vulgaris [TaxId: 881]}
          Length = 81

 Score = 23.6 bits (51), Expect = 1.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 33 SHLRSKTKINPKFLNRCPHCVN 54
              SK  I+ K   RC HC+N
Sbjct: 49 KWDGSKLSIDNKECVRCMHCIN 70


>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor
          CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}
          Length = 133

 Score = 22.2 bits (47), Expect = 7.8
 Identities = 2/29 (6%), Positives = 9/29 (31%), Gaps = 3/29 (10%)

Query: 24 IDALVDIVSSHLRSKTKINPKFLNRCPHC 52
          ++  V  +   +     +  + L +    
Sbjct: 41 LNEAVGAL---MYHTITLTREDLEKFKAL 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.133    0.425 

Gapped
Lambda     K      H
   0.267   0.0667    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 263,584
Number of extensions: 9504
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 8
Length of query: 69
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 32
Effective length of database: 1,899,586
Effective search space: 60786752
Effective search space used: 60786752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.0 bits)