BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy450
(478 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 216 bits (551), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 114/227 (50%), Positives = 156/227 (68%), Gaps = 10/227 (4%)
Query: 200 SVPNVSWEDIGGLSKLKAEI--LSTFRGVNRTSGLK-----RSGLLLYGPPGTGKTLIAK 252
VP V+WEDIGGL +K E+ L + + LK G+L YGPPG GKTL+AK
Sbjct: 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67
Query: 253 AVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLA-PRRGQ 311
A+A EC+ NF+++KGPELL + G+SE N+R +F KAR AAPCV+FFDELDS+A R G
Sbjct: 68 AIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN 127
Query: 312 EDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYE 371
G DRV++Q+L EMDG+ T ++VFI+GATNR D++DPAILRPGRLD+ +Y+ L +
Sbjct: 128 IGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 187
Query: 372 DRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNA 418
++ S++ +LKA +RK ++ DV L+ L + SGAD+ IC A
Sbjct: 188 EK-SRVAILKANLRKSPVAKDVDLEFLA-KMTNGFSGADLTEICQRA 232
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 215 bits (548), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 114/227 (50%), Positives = 156/227 (68%), Gaps = 10/227 (4%)
Query: 200 SVPNVSWEDIGGLSKLKAEI--LSTFRGVNRTSGLK-----RSGLLLYGPPGTGKTLIAK 252
VP V+WEDIGGL +K E+ L + + LK G+L YGPPG GKTL+AK
Sbjct: 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 529
Query: 253 AVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLA-PRRGQ 311
A+A EC+ NF+++KGPELL + G+SE N+R +F KAR AAPCV+FFDELDS+A R G
Sbjct: 530 AIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN 589
Query: 312 EDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYE 371
G DRV++Q+L EMDG+ T ++VFI+GATNR D++DPAILRPGRLD+ +Y+ L +
Sbjct: 590 IGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649
Query: 372 DRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNA 418
++ S++ +LKA +RK ++ DV L+ L + SGAD+ IC A
Sbjct: 650 EK-SRVAILKANLRKSPVAKDVDLEFLA-KMTNGFSGADLTEICQRA 694
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 158/277 (57%), Gaps = 19/277 (6%)
Query: 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRS-------GLLLYGPPGTGKTLIAK 252
S+ V ++DIGG K A+I R L ++ G+LLYGPPGTGKTLIA+
Sbjct: 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 253 AVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQE 312
AVA E F + GPE+++K G+SE N+R F +A AP ++F DELD++AP+R E
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--E 314
Query: 313 DQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYED 372
V R+VSQLL MDG+ V ++ ATNR + +DPA+ R GR D+ + +G+ D
Sbjct: 315 KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI-PD 373
Query: 373 RISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRR---IITS 429
+L +L+ + KL+DDV L+ + + + GAD+ ++CS A +AIR+ +I
Sbjct: 374 ATGRLEILQIHTKNMKLADDVDLEQVANETHGHV-GADLAALCSEAALQAIRKKMDLIDL 432
Query: 430 APQVKSAPVI----VTMDDFLGACSLATAPDKFSQSV 462
+ A V+ VTMDDF A S + P ++V
Sbjct: 433 EDETIDAEVMNSLAVTMDDFRWALSQSN-PSALRETV 468
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 215 bits (548), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 114/227 (50%), Positives = 156/227 (68%), Gaps = 10/227 (4%)
Query: 200 SVPNVSWEDIGGLSKLKAEI--LSTFRGVNRTSGLK-----RSGLLLYGPPGTGKTLIAK 252
VP V+WEDIGGL +K E+ L + + LK G+L YGPPG GKTL+AK
Sbjct: 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 529
Query: 253 AVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLA-PRRGQ 311
A+A EC+ NF+++KGPELL + G+SE N+R +F KAR AAPCV+FFDELDS+A R G
Sbjct: 530 AIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN 589
Query: 312 EDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYE 371
G DRV++Q+L EMDG+ T ++VFI+GATNR D++DPAILRPGRLD+ +Y+ L +
Sbjct: 590 IGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649
Query: 372 DRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNA 418
++ S++ +LKA +RK ++ DV L+ L + SGAD+ IC A
Sbjct: 650 EK-SRVAILKANLRKSPVAKDVDLEFLA-KMTNGFSGADLTEICQRA 694
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/277 (38%), Positives = 158/277 (57%), Gaps = 19/277 (6%)
Query: 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRS-------GLLLYGPPGTGKTLIAK 252
S+ V ++D+GG K A+I R L ++ G+LLYGPPGTGKTLIA+
Sbjct: 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 253 AVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQE 312
AVA E F + GPE+++K G+SE N+R F +A AP ++F DELD++AP+R E
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--E 314
Query: 313 DQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYED 372
V R+VSQLL MDG+ V ++ ATNR + +DPA+ R GR D+ + +G+ D
Sbjct: 315 KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI-PD 373
Query: 373 RISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRR---IITS 429
+L +L+ + KL+DDV L+ + + + GAD+ ++CS A +AIR+ +I
Sbjct: 374 ATGRLEILQIHTKNMKLADDVDLEQVANETHGHV-GADLAALCSEAALQAIRKKMDLIDL 432
Query: 430 APQVKSAPVI----VTMDDFLGACSLATAPDKFSQSV 462
+ A V+ VTMDDF A S + P ++V
Sbjct: 433 EDETIDAEVMNSLAVTMDDFRWALSQSN-PSALRETV 468
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 158/236 (66%), Gaps = 12/236 (5%)
Query: 200 SVPNVSWEDIGGLSKLKAE----ILSTFRGVNRTSGL---KRSGLLLYGPPGTGKTLIAK 252
+VPNV+W DIG L ++ E IL+ R ++ L +G+LL GPPG GKTL+AK
Sbjct: 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAK 62
Query: 253 AVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQE 312
AVA E +NF++VKGPELLN Y+G+SE +R VF +A+++APCV+FFDE+D+L PRR
Sbjct: 63 AVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRR--S 120
Query: 313 DQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGL--Y 370
D+ +G RVV+QLL EMDG+ Q VFI+ ATNR D++DPAILRPGRLDK+L+VGL
Sbjct: 121 DRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPP 180
Query: 371 EDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQM-SGADIYSICSNAWTRAIRR 425
DR++ L + K L DV+L+++ +GAD+ ++ A A+R+
Sbjct: 181 ADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQ 236
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 177 bits (450), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 150/259 (57%), Gaps = 24/259 (9%)
Query: 202 PNVSWEDIGGLSKLKAEILSTFR------GVNRTSGLKR-SGLLLYGPPGTGKTLIAKAV 254
PNV +EDIGGL K EI + G++ G+LLYGPPGTGKTL+AKAV
Sbjct: 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAV 71
Query: 255 ATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQ 314
ATE F+ V G EL+ K+IG+ ++++F A+ AP ++F DE+D++A +R D
Sbjct: 72 ATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKR--TDA 129
Query: 315 SSG---VMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYE 371
+G + R + QLLAEMDG DV I+GATNR D+LDPAILRPGR D+ + V +
Sbjct: 130 LTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPD 189
Query: 372 DRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAP 431
++ +L +LK RK L++DV+L+ + GA++ +IC+ A AIR +
Sbjct: 190 EK-GRLEILKIHTRKMNLAEDVNLEE-IAKMTEGCVGAELKAICTEAGMNAIRELRDY-- 245
Query: 432 QVKSAPVIVTMDDFLGACS 450
VTMDDF A
Sbjct: 246 --------VTMDDFRKAVE 256
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 158/277 (57%), Gaps = 19/277 (6%)
Query: 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRS-------GLLLYGPPGTGKTLIAK 252
S+ V ++DIGG K A+I R L ++ G+LLYGPPGTGKTLIA+
Sbjct: 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 253 AVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQE 312
AVA E F + GPE+++K G+SE N+R F +A AP ++F DELD++AP+R E
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--E 314
Query: 313 DQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYED 372
V R+VSQLL MDG+ V ++ ATNR + +DPA+ R GR D+ + +G+ D
Sbjct: 315 KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI-PD 373
Query: 373 RISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRR---IITS 429
+L +L+ + KL+DDV L+ + + + GAD+ ++CS A +AIR+ +I
Sbjct: 374 ATGRLEILQIHTKNMKLADDVDLEQVANETHGHV-GADLAALCSEAALQAIRKKMDLIDL 432
Query: 430 APQVKSAPVI----VTMDDFLGACSLATAPDKFSQSV 462
+ A V+ VTMDDF A S + P ++V
Sbjct: 433 EDETIDAEVMNSLAVTMDDFRWALSQSN-PSALRETV 468
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 158/277 (57%), Gaps = 19/277 (6%)
Query: 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRS-------GLLLYGPPGTGKTLIAK 252
S+ V ++DIGG K A+I R L ++ G+LLYGPPGTGKTLIA+
Sbjct: 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 253 AVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQE 312
AVA E F + GPE+++K G+SE N+R F +A AP ++F DELD++AP+R E
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--E 314
Query: 313 DQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYED 372
V R+VSQLL MDG+ V ++ ATNR + +DPA+ R GR D+ + +G+ D
Sbjct: 315 KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI-PD 373
Query: 373 RISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRR---IITS 429
+L +L+ + KL+DDV L+ + + + GAD+ ++CS A +AIR+ +I
Sbjct: 374 ATGRLEILQIHTKNMKLADDVDLEQVANETHGHV-GADLAALCSEAALQAIRKKMDLIDL 432
Query: 430 APQVKSAPVI----VTMDDFLGACSLATAPDKFSQSV 462
+ A V+ VTMDDF A S + P ++V
Sbjct: 433 EDETIDAEVMNSLAVTMDDFRWALSQSN-PSALRETV 468
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 158/277 (57%), Gaps = 19/277 (6%)
Query: 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRS-------GLLLYGPPGTGKTLIAK 252
S+ V ++DIGG K A+I R L ++ G+LLYGPPGTGKTLIA+
Sbjct: 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 253 AVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQE 312
AVA E F + GPE+++K G+SE N+R F +A AP ++F DELD++AP+R E
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--E 314
Query: 313 DQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYED 372
V R+VSQLL MDG+ V ++ ATNR + +DPA+ R GR D+ + +G+ D
Sbjct: 315 KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI-PD 373
Query: 373 RISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRR---IITS 429
+L +L+ + KL+DDV L+ + + + GAD+ ++CS A +AIR+ +I
Sbjct: 374 ATGRLEILQIHTKNMKLADDVDLEQVANETHGHV-GADLAALCSEAALQAIRKKMDLIDL 432
Query: 430 APQVKSAPVI----VTMDDFLGACSLATAPDKFSQSV 462
+ A V+ VTMDDF A S + P ++V
Sbjct: 433 EDETIDAEVMNSLAVTMDDFRWALSQSN-PSALRETV 468
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 153/265 (57%), Gaps = 18/265 (6%)
Query: 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRS-------GLLLYGPPGTGKTLIAK 252
S+ V ++D+GG K A+I R L ++ G+LLYGPPGTGKTLIA+
Sbjct: 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 253 AVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQE 312
AVA E F + GPE+++K G+SE N+R F +A AP ++F DELD++AP+R E
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--E 314
Query: 313 DQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYED 372
V R+VSQLL MDG+ V ++ ATNR + +DPA+ R GR D+ + +G+ D
Sbjct: 315 KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI-PD 373
Query: 373 RISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRR---IITS 429
+L +L+ + KL+DDV L+ + + + GAD+ ++CS A +AIR+ +I
Sbjct: 374 ATGRLEILQIHTKNMKLADDVDLEQVANETHGHV-GADLAALCSEAALQAIRKKMDLIDL 432
Query: 430 APQVKSAPVI----VTMDDFLGACS 450
+ A V+ VTMDDF A S
Sbjct: 433 EDETIDAEVMNSLAVTMDDFRWALS 457
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 133/232 (57%), Gaps = 9/232 (3%)
Query: 202 PNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRS-------GLLLYGPPGTGKTLIAKAV 254
P+V++ D+GGL K EI + L G+LLYGPPGTGKT++ KAV
Sbjct: 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAV 226
Query: 255 ATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRR-GQED 313
A + F+ V G E ++KY+G+ +R+VF AR AP ++F DE+DS+A +R +
Sbjct: 227 ANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQT 286
Query: 314 QSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDR 373
S + R++ +LL +MDG S +V ++ ATNR D LDPA+LRPGRLD+ + DR
Sbjct: 287 GSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDR 346
Query: 374 ISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRR 425
+ + + K L+ + LDSL+ S +SGA I +I A RA+R+
Sbjct: 347 RERRLIFGTIASKMSLAPEADLDSLIIRNDS-LSGAVIAAIMQEAGLRAVRK 397
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 134/233 (57%), Gaps = 12/233 (5%)
Query: 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRS-------GLLLYGPPGTGKTLIAKA 253
VP+ +++ +GGL+K EI + L S G++LYGPPGTGKTL+A+A
Sbjct: 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARA 201
Query: 254 VATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRR--GQ 311
VA F+ V G EL+ KYIG+ +R +F+ AR AP ++F DE+DS+ R G
Sbjct: 202 VAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGS 261
Query: 312 EDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYE 371
S V R + +LL ++DG TS+++ I+ ATNR+D+LDPA+LRPGR+D+ +
Sbjct: 262 GGGDSEV-QRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFP-PP 319
Query: 372 DRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIR 424
++ +L+ RK L+ ++L + + SGAD+ +C+ A A+R
Sbjct: 320 SVAARAEILRIHSRKMNLTRGINLRKVAEKM-NGCSGADVKGVCTEAGMYALR 371
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 137/234 (58%), Gaps = 12/234 (5%)
Query: 205 SWEDIGGLSKLK---AEILSTFRGVNR---TSGLKRSGLLLYGPPGTGKTLIAKAVATEC 258
++ D+ G + K AE++ R +R G G+L+ GPPGTGKTL+AKA+A E
Sbjct: 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 259 RMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQE-DQSSG 317
++ F + G + + ++G +R++F +A+ AAPC++F DE+D++ +RG
Sbjct: 70 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 129
Query: 318 VMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQL 377
++ ++Q+L EMDG ++ + ++ ATNR D+LDPA+LRPGR D+ + VGL + R +
Sbjct: 130 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 189
Query: 378 GVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNA---WTRAIRRIIT 428
+LK +R+ L+ D+ + P SGAD+ ++ + A R +R+++
Sbjct: 190 -ILKVHMRRVPLAPDIDAAIIARGTPG-FSGADLANLVNEAALFAARGNKRVVS 241
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 145 bits (365), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 142/249 (57%), Gaps = 20/249 (8%)
Query: 202 PNVSWEDIGGLS------KLKAEILSTFRGVNRTSGLKR-SGLLLYGPPGTGKTLIAKAV 254
P S+ DIGGL K E+ T + G+K G++LYG PGTGKTL+AKAV
Sbjct: 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 236
Query: 255 ATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQ 314
A + FL + G EL+ KY+G R +F A AP +VF DE+D++ +R D
Sbjct: 237 ANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKR--YDS 294
Query: 315 SSG---VMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYE 371
+SG + R + +LL ++DG DV ++ ATN+++ LDPA++RPGR+D+ + L+E
Sbjct: 295 NSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKI---LFE 351
Query: 372 --DRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAI--RRII 427
D ++ +L K LS+DV+L++LV +SGADI ++C+ A A+ RR+
Sbjct: 352 NPDLSTKKKILGIHTSKMNLSEDVNLETLVTT-KDDLSGADIQAMCTEAGLLALRERRMQ 410
Query: 428 TSAPQVKSA 436
+A K A
Sbjct: 411 VTAEDFKQA 419
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 145 bits (365), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 131/228 (57%), Gaps = 9/228 (3%)
Query: 204 VSWEDIGG----LSKLK--AEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATE 257
V+++D+GG + +LK E L NR G+LL GPPGTGKTL+A+AVA E
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72
Query: 258 CRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQE-DQSS 316
+ F + G + + ++G +R++F +A++ APC+VF DE+D++ RG
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGH 132
Query: 317 GVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQ 376
++ ++QLL EMDG + + + ++ ATNR D+LDPA+LRPGR DK + V D + +
Sbjct: 133 DEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVD-PPDMLGR 191
Query: 377 LGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIR 424
+L+ R L++DV+L+ + P GAD+ ++ + A A R
Sbjct: 192 KKILEIHTRNKPLAEDVNLEIIAKRTPG-FVGADLENLVNEAALLAAR 238
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 130/228 (57%), Gaps = 9/228 (3%)
Query: 204 VSWEDIGG----LSKLK--AEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATE 257
V+++D+GG + +LK E L NR G+LL GPPGTG TL+A+AVA E
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGE 72
Query: 258 CRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQE-DQSS 316
+ F + G + + ++G +R++F +A++ APC+VF DE+D++ RG
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGH 132
Query: 317 GVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQ 376
++ ++QLL EMDG + + + ++ ATNR D+LDPA+LRPGR DK + V D + +
Sbjct: 133 DEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVD-PPDMLGR 191
Query: 377 LGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIR 424
+L+ R L++DV+L+ + P GAD+ ++ + A A R
Sbjct: 192 KKILEIHTRNKPLAEDVNLEIIAKRTPG-FVGADLENLVNEAALLAAR 238
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 104/343 (30%), Positives = 171/343 (49%), Gaps = 26/343 (7%)
Query: 97 KQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTC 156
+Q+ L + V+ + E E + + GG+ D + V + V + +
Sbjct: 73 RQLPYLVANVVEVMDMNEIEDKE--NSESTTQGGNVNLDNTAVGKAAVVKTSSRQTVFLP 130
Query: 157 LVRLSVKNKMLKQ---GINKRDLQKEDFQQIYDDLQSRYSDQLDAPSV---PNVSWEDIG 210
+V L +K+ G+NK D I D L S + ++ A V P ++ D+G
Sbjct: 131 MVGLVDPDKLKPNDLVGVNK------DSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVG 184
Query: 211 GLSKLKAEILSTF-RGVNRTSGLKRSGL------LLYGPPGTGKTLIAKAVATECRMNFL 263
GL K E++ + R K G+ L+YGPPGTGKTL+A+A A + FL
Sbjct: 185 GLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFL 244
Query: 264 AVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSG-VMDRV 322
+ P+L+ YIG+ + +R+ F A+ AP ++F DELD++ +R ++S + R
Sbjct: 245 KLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRT 304
Query: 323 VSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGL-YEDRISQLGVLK 381
+ +LL ++DG + V +L ATNRVD+LDPA+LR GRLD+ + L ED +Q +L+
Sbjct: 305 MLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQ--ILQ 362
Query: 382 AVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIR 424
RK DD++ L + +GA + ++ A A+R
Sbjct: 363 IHSRKMTTDDDINWQELARS-TDEFNGAQLKAVTVEAGMIALR 404
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 137/239 (57%), Gaps = 16/239 (6%)
Query: 203 NVSWEDIGGLSKLKAEI---LSTFRGVNRTSGLKRS---GLLLYGPPGTGKTLIAKAVAT 256
VS++D+ G+ + K E+ + + R L G LL GPPG GKTL+AKAVAT
Sbjct: 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 257 ECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQ-- 314
E ++ FLA+ G E + G +R++F +AR+ APC+V+ DE+D++ +R
Sbjct: 62 EAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 121
Query: 315 SSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGL--YED 372
S+ ++ ++QLL EMDG+ T+ V +L +TNR D+LD A++RPGRLD+ +++ L ++
Sbjct: 122 SNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQE 181
Query: 373 RISQLGVLKAVVRKFKLSDDVSLDS--LVHHFPSQMSGADIYSICSNAWTRAIRRIITS 429
R + + ++ KL+ + S L P SGADI +IC+ A A R TS
Sbjct: 182 RRE---IFEQHLKSLKLTQSSTFYSQRLAELTPG-FSGADIANICNEAALHAAREGHTS 236
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 134/233 (57%), Gaps = 13/233 (5%)
Query: 202 PNVSWEDIGGLSKLKAEILSTF-------RGVNRTSGLKRSGLLLYGPPGTGKTLIAKAV 254
PNV ++D+ G + K E++ R N + + + G+LL GPPGTGKTL+AKAV
Sbjct: 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPK-GVLLVGPPGTGKTLLAKAV 64
Query: 255 ATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQ 314
A E + F ++ G + ++G +R++F A+ AP ++F DE+D++ R
Sbjct: 65 AGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGV 124
Query: 315 SSGVMDR--VVSQLLAEMDGVHTSQ-DVFILGATNRVDLLDPAILRPGRLDKSLYVGLYE 371
SG +R ++QLLAEMDG + V +L ATNR ++LDPA++RPGR D+ + V
Sbjct: 125 VSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVD-KP 183
Query: 372 DRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIR 424
D ++ +LK ++ KL++DV+L V + ++GAD+ +I + A A R
Sbjct: 184 DFNGRVEILKVHIKGVKLANDVNLQE-VAKLTAGLAGADLANIINEAALLAGR 235
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 127/229 (55%), Gaps = 10/229 (4%)
Query: 204 VSWEDIGGLSKLKAEILSTFR------GVNRTSGLKR-SGLLLYGPPGTGKTLIAKAVAT 256
++++ IGGL++ E+ + + G+K G+LLYGPPGTGKTL+AKAVA
Sbjct: 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237
Query: 257 ECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSS 316
NF+ +++KYIG+S IR +F A+ PC++F DE+D++ RR E S+
Sbjct: 238 TIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSA 297
Query: 317 G-VMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRIS 375
+ R + +LL +MDG I+ ATNR D LDPA+LRPGRLD+ + + L +
Sbjct: 298 DREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPL-PNEAG 356
Query: 376 QLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIR 424
+L + K K K + + ++ V +GADI + + A AIR
Sbjct: 357 RLEIFKIHTAKVKKTGEFDFEAAV-KMSDGFNGADIRNCATEAGFFAIR 404
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 128/232 (55%), Gaps = 12/232 (5%)
Query: 202 PNVSWEDIGG----LSKLKAEILSTFRGVNRTSGL---KRSGLLLYGPPGTGKTLIAKAV 254
P+V++ D+GG + KL+ + R + L G+LLYGPPGTGKTL A+AV
Sbjct: 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAV 263
Query: 255 ATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQ 314
A F+ V G EL+ KY+G+ +R +F AR+ C++FFDE+D++ R +D
Sbjct: 264 ANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGAR-FDDG 322
Query: 315 SSG--VMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYED 372
+ G + R + +L+ ++DG ++ ++ ATNR + LDPA+LRPGR+D+ + L D
Sbjct: 323 AGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSL-PD 381
Query: 373 RISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIR 424
+ + + + + + + L+ +GA++ S+C+ A AIR
Sbjct: 382 LEGRANIFRIHSKSMSVERGIRWE-LISRLCPNSTGAELRSVCTEAGMFAIR 432
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 127 bits (320), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 136/242 (56%), Gaps = 32/242 (13%)
Query: 202 PNVSWEDIGGLSKLK-----AEILST-----FRGVNRTSGLKRSGLLLYGPPGTGKTLIA 251
PNV WED+ GL K A IL F+G + + SG+LLYGPPGTGK+ +A
Sbjct: 22 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPT----SGILLYGPPGTGKSYLA 77
Query: 252 KAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQ 311
KAVATE F +V +L++K++G+SE+ ++ +F AR P ++F DE+D+L RG+
Sbjct: 78 KAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGE 137
Query: 312 EDQSSGVMDRVVSQLLAEMDGV-HTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLY 370
+ S R+ ++LL +M+GV + SQ V +LGATN LD AI R R ++ +Y+ L
Sbjct: 138 GE--SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLP 193
Query: 371 E--DRIS----QLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIR 424
+ R + +G V+ K D +L ++ + SG+DI + +A + IR
Sbjct: 194 DLAARTTMFEINVGDTPCVLTK---EDYRTLGAMTEGY----SGSDIAVVVKDALMQPIR 246
Query: 425 RI 426
+I
Sbjct: 247 KI 248
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 135/242 (55%), Gaps = 32/242 (13%)
Query: 202 PNVSWEDIGGLSKLKAEILST----------FRGVNRTSGLKRSGLLLYGPPGTGKTLIA 251
PNV WED+ GL K + F+G + + SG+LLYGPPGTGK+ +A
Sbjct: 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPT----SGILLYGPPGTGKSYLA 101
Query: 252 KAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQ 311
KAVATE F +V +L++K++G+SE+ ++ +F AR P ++F D++D+L RG+
Sbjct: 102 KAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE 161
Query: 312 EDQSSGVMDRVVSQLLAEMDGV-HTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLY 370
+ S R+ ++LL +M+GV + SQ V +LGATN LD AI R R ++ +Y+ L
Sbjct: 162 GE--SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLP 217
Query: 371 E--DRIS----QLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIR 424
+ R + +G +V+ K D +L ++ + SG+DI + +A + IR
Sbjct: 218 DLAARTTMFEINVGDTPSVLTK---EDYRTLGAMTEGY----SGSDIAVVVKDALMQPIR 270
Query: 425 RI 426
+I
Sbjct: 271 KI 272
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 136/242 (56%), Gaps = 32/242 (13%)
Query: 202 PNVSWEDIGGLSKLK-----AEILST-----FRGVNRTSGLKRSGLLLYGPPGTGKTLIA 251
PNV WED+ GL K A IL F+G + + SG+LLYGPPGTGK+ +A
Sbjct: 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPT----SGILLYGPPGTGKSYLA 68
Query: 252 KAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQ 311
KAVATE F +V +L++K++G+SE+ ++ +F AR P ++F D++D+L RG+
Sbjct: 69 KAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE 128
Query: 312 EDQSSGVMDRVVSQLLAEMDGV-HTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLY 370
+ S R+ ++LL +M+GV + SQ V +LGATN LD AI R R ++ +Y+ L
Sbjct: 129 GE--SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLP 184
Query: 371 E--DRIS----QLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIR 424
+ R + +G V+ K D +L ++ + SG+DI + +A + IR
Sbjct: 185 DLAARTTMFEINVGDTPCVLTK---EDYRTLGAMTEGY----SGSDIAVVVKDALMQPIR 237
Query: 425 RI 426
+I
Sbjct: 238 KI 239
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 136/242 (56%), Gaps = 32/242 (13%)
Query: 202 PNVSWEDIGGLSKLK-----AEILST-----FRGVNRTSGLKRSGLLLYGPPGTGKTLIA 251
PNV WED+ GL K A IL F+G + + SG+LLYGPPGTGK+ +A
Sbjct: 31 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPT----SGILLYGPPGTGKSYLA 86
Query: 252 KAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQ 311
KAVATE F +V +L++K++G+SE+ ++ +F AR P ++F D++D+L RG+
Sbjct: 87 KAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE 146
Query: 312 EDQSSGVMDRVVSQLLAEMDGV-HTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLY 370
+ S R+ ++LL +M+GV + SQ V +LGATN LD AI R R ++ +Y+ L
Sbjct: 147 GE--SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLP 202
Query: 371 E--DRIS----QLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIR 424
+ R + +G V+ K D +L ++ + SG+DI + +A + IR
Sbjct: 203 DLAARTTMFEINVGDTPCVLTK---EDYRTLGAMTEGY----SGSDIAVVVKDALMQPIR 255
Query: 425 RI 426
+I
Sbjct: 256 KI 257
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 126/243 (51%), Gaps = 27/243 (11%)
Query: 202 PNVSWEDIGGLSKLKA-------------EILSTFRGVNRTSGLKRSGLLLYGPPGTGKT 248
P V+WEDI G+ KA +I + RG + G+LL+GPPGTGKT
Sbjct: 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPK-------GILLFGPPGTGKT 131
Query: 249 LIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPR 308
LI K +A++ F ++ L +K++G+ E+ +R +F AR P V+F DE+DSL +
Sbjct: 132 LIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQ 191
Query: 309 RGQEDQSSGVMDRVVSQLLAEMDGVHTSQD--VFILGATNRVDLLDPAILRPGRLDKSLY 366
RG + S R+ ++ L ++DG TS + + ++GATNR +D A R RL K LY
Sbjct: 192 RGDGEHESS--RRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLY 247
Query: 367 VGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRI 426
+ L E + V+ + ++ + ++ +V SGAD+ +C A IR +
Sbjct: 248 IPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQS-DAFSGADMTQLCREASLGPIRSL 306
Query: 427 ITS 429
T+
Sbjct: 307 QTA 309
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 104/181 (57%), Gaps = 13/181 (7%)
Query: 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPC 295
G+LL GPPG GKT +A+AVA E R+ F+ G + + ++G +R++F A+ APC
Sbjct: 66 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 125
Query: 296 VVFFDELDSLAPRRGQEDQSSGV------MDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349
+VF DE+D++ +RG SGV ++ ++QLL EMDG + ++ ATNR D
Sbjct: 126 IVFIDEIDAVGRKRG-----SGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 180
Query: 350 LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGA 409
+LDPA+LRPGR D+ + + D + +L+ R L++DV L L P GA
Sbjct: 181 ILDPALLRPGRFDRQIAID-APDVKGREQILRIHARGKPLAEDVDLALLAKRTPG-FVGA 238
Query: 410 D 410
D
Sbjct: 239 D 239
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 104/181 (57%), Gaps = 13/181 (7%)
Query: 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPC 295
G+LL GPPG GKT +A+AVA E R+ F+ G + + ++G +R++F A+ APC
Sbjct: 75 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134
Query: 296 VVFFDELDSLAPRRGQEDQSSGV------MDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349
+VF DE+D++ +RG SGV ++ ++QLL EMDG + ++ ATNR D
Sbjct: 135 IVFIDEIDAVGRKRG-----SGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 189
Query: 350 LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGA 409
+LDPA+LRPGR D+ + + D + +L+ R L++DV L L P GA
Sbjct: 190 ILDPALLRPGRFDRQIAID-APDVKGREQILRIHARGKPLAEDVDLALLAKRTPG-FVGA 247
Query: 410 D 410
D
Sbjct: 248 D 248
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 124 bits (312), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 104/181 (57%), Gaps = 13/181 (7%)
Query: 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPC 295
G+LL GPPG GKT +A+AVA E R+ F+ G + + ++G +R++F A+ APC
Sbjct: 51 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110
Query: 296 VVFFDELDSLAPRRGQEDQSSGV------MDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349
+VF DE+D++ +RG SGV ++ ++QLL EMDG + ++ ATNR D
Sbjct: 111 IVFIDEIDAVGRKRG-----SGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 165
Query: 350 LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGA 409
+LDPA+LRPGR D+ + + D + +L+ R L++DV L L P GA
Sbjct: 166 ILDPALLRPGRFDRQIAID-APDVKGREQILRIHARGKPLAEDVDLALLAKRTPG-FVGA 223
Query: 410 D 410
D
Sbjct: 224 D 224
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 104/181 (57%), Gaps = 13/181 (7%)
Query: 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPC 295
G+LL GPPG GKT +A+AVA E R+ F+ G + + ++G +R++F A+ APC
Sbjct: 75 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134
Query: 296 VVFFDELDSLAPRRGQEDQSSGV------MDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349
+VF DE+D++ +RG SGV ++ ++QLL EMDG + ++ ATNR D
Sbjct: 135 IVFIDEIDAVGRKRG-----SGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 189
Query: 350 LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGA 409
+LDPA+LRPGR D+ + + D + +L+ R L++DV L L P GA
Sbjct: 190 ILDPALLRPGRFDRQIAID-APDVKGREQILRIHARGKPLAEDVDLALLAKRTPG-FVGA 247
Query: 410 D 410
D
Sbjct: 248 D 248
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 140/271 (51%), Gaps = 36/271 (13%)
Query: 202 PNVSWEDIGGLS----KLKAEILSTFRGVNRTSGLKRS---GLLLYGPPGTGKTLIAKAV 254
PNV W D+ GL LK ++ + + +G KR+ G+LL+GPPGTGK+ +AKAV
Sbjct: 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAV 65
Query: 255 ATECR-MNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQED 313
ATE F ++ +L++K++G+SE+ ++N+F AR P ++F DE+DSL R + +
Sbjct: 66 ATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE 125
Query: 314 QSSGVMDRVVSQLLAEMDGVHTSQD-VFILGATNRVDLLDPAILRPGRLDKSLYVGLYED 372
S R+ ++ L +M GV D + +LGATN +LD AI R R +K +Y+ L E
Sbjct: 126 --SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEP 181
Query: 373 RISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQM-------SGADIYSICSNAWTRAIRR 425
A FKL + +SL ++ SGADI I +A + +R+
Sbjct: 182 H--------ARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233
Query: 426 IITSAPQVKS------APVIVTMDDFLGACS 450
+ SA K A +DD L CS
Sbjct: 234 -VQSATHFKKVRGPSRADPNHLVDDLLTPCS 263
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 140/272 (51%), Gaps = 38/272 (13%)
Query: 202 PNVSWEDIGGLS----KLKAEILSTFRGVNRTSGLKRS---GLLLYGPPGTGKTLIAKAV 254
PNV W D+ GL LK ++ + + +G KR+ G+LL+GPPGTGK+ +AKAV
Sbjct: 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAV 187
Query: 255 ATECR-MNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQED 313
ATE F ++ +L++K++G+SE+ ++N+F AR P ++F DE+DSL R + +
Sbjct: 188 ATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE 247
Query: 314 QSSGVMDRVVSQLLAEMDGVHTSQD-VFILGATNRVDLLDPAILRPGRLDKSLYVGLYED 372
S R+ ++ L +M GV D + +LGATN +LD AI R R +K +Y+ L E
Sbjct: 248 --SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPE- 302
Query: 373 RISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQM-------SGADIYSICSNAWTRAIRR 425
A F+L + +SL ++ SGADI I +A + +R+
Sbjct: 303 -------AHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355
Query: 426 IITS-------APQVKSAPVIVTMDDFLGACS 450
+ ++ P IV +D L CS
Sbjct: 356 VQSATHFKKVRGPSRADPNCIV--NDLLTPCS 385
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 104/193 (53%), Gaps = 17/193 (8%)
Query: 181 FQQIYDDLQSRYSDQLDAPSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLY 240
+I D+ + D + + + ++I L L+ E+ + R R GLLL+
Sbjct: 102 MNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPAR-------GLLLF 154
Query: 241 GPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFD 300
GPPG GKT++AKAVA E F + L +KY+G+ E+ +R +F AR P ++F D
Sbjct: 155 GPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFID 214
Query: 301 ELDSL--APRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQD--VFILGATNRVDLLDPAIL 356
++DSL R G+ D S R+ ++ L E DGV ++ D V ++GATNR LD A+L
Sbjct: 215 QVDSLLCERREGEHDASR----RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVL 270
Query: 357 RPGRLDKSLYVGL 369
R R K +YV L
Sbjct: 271 R--RFIKRVYVSL 281
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 138/284 (48%), Gaps = 40/284 (14%)
Query: 203 NVSWEDIGG-------------LSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTL 249
V W DI G L ++ E+ + R + GLLL+GPPG GKTL
Sbjct: 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAK-------GLLLFGPPGNGKTL 69
Query: 250 IAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRR 309
+A+AVATEC FL + L +KY+G E+ +R +F AR P ++F DE+DSL R
Sbjct: 70 LARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER 129
Query: 310 GQEDQSSGVMDRVVSQLLAEMDGVHTSQD---VFILGATNRVDLLDPAILRPGRLDKSLY 366
+ + R+ ++ L E DG+ + D + +L ATNR LD A LR R K +Y
Sbjct: 130 SSSEHEAS--RRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVY 185
Query: 367 VGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRI 426
V L +++ +L + + + ++ D +L L SG+D+ ++ +A IR +
Sbjct: 186 VSLPDEQTRELLLNRLLQKQGSPLDTEALRRLA-KITDGYSGSDLTALAKDAALEPIREL 244
Query: 427 ITSAPQVK----SAPVIVTMDDFLGACSLATAPDKFSQSVAPDN 466
+ QVK SA +T DF + + +SVAP +
Sbjct: 245 --NVEQVKCLDISAMRAITEQDFHSSLK------RIRRSVAPQS 280
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 87/188 (46%), Gaps = 27/188 (14%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKA----RSA 292
L ++G G GK+ + V + +N + + EL + G+ + IR + +A R
Sbjct: 39 LGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKG 98
Query: 293 APCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLL---------AEMDGVHTSQD---VF 340
C +F ++LD+ A R G Q + V +++V+ L ++ G++ Q+ V
Sbjct: 99 NMCCLFINDLDAGAGRMGGTTQYT-VNNQMVNATLMNIADNPTNVQLPGMYNKQENARVP 157
Query: 341 ILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLD---S 397
I+ N L ++R GR++K + EDRI GV + R +D+V +
Sbjct: 158 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRI---GVCTGIFR----TDNVPAEDVVK 210
Query: 398 LVHHFPSQ 405
+V +FP Q
Sbjct: 211 IVDNFPGQ 218
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK-YIGQSEENIRNVFLKA--- 289
+S +LL GP G+GKTL+A+ +A + L Y+G+ ENI L+A
Sbjct: 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 131
Query: 290 --RSAAPCVVFFDELDSLA 306
+ A +VF DE+D ++
Sbjct: 132 NVQKAQKGIVFIDEIDKIS 150
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 194 DQLDAPSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKA 253
D+LD + E+ GL K+K IL T LK L L GPPG GKT +AK+
Sbjct: 68 DKLDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKS 127
Query: 254 VATECRMNFLAVKGPELLNK---------YIGQSEENIRNVFLKARSAAPCVVFFDELDS 304
+A F+ + + ++ Y+G I KA P V DE+D
Sbjct: 128 IAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDK 186
Query: 305 LAPR-RGQEDQSSGVMD 320
++ RG D SS +++
Sbjct: 187 MSSDFRG--DPSSAMLE 201
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 232 LKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK-YIGQSEENIRNVFLK-- 288
L +S +LL GP G+GKTL+A+ +A + F L Y+G+ ENI L+
Sbjct: 49 LGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKC 108
Query: 289 ---ARSAAPCVVFFDELDSLA 306
+ A +V+ D++D ++
Sbjct: 109 DYDVQKAQRGIVYIDQIDKIS 129
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 232 LKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK-YIGQSEENIRNVFLK-- 288
L +S +LL GP G+GKTL+A+ +A + F L Y+G+ ENI L+
Sbjct: 49 LGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKC 108
Query: 289 ---ARSAAPCVVFFDELDSLA 306
+ A +V+ D++D ++
Sbjct: 109 DYDVQKAQRGIVYIDQIDKIS 129
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 237 LLLYGPPGTGKTLIAKAVATE--CRMNFLAVKGPELLNKYIGQSE---ENIRN-VFLKAR 290
+LL GPPGTGKT +A A+A E ++ F G E+ + I ++E EN R + L+ +
Sbjct: 80 VLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTEVLXENFRRAIGLRIK 139
Query: 291 SAAPCV---VFFDELD--SLAPRRGQE 312
P + V +LD + P+ GQ+
Sbjct: 140 EGPPGIIQDVTLHDLDVANARPQGGQD 166
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCV 296
LLL+GPPG GKT +A +A E +N GP + + ++ + + +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEEG-DI 93
Query: 297 VFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQ----DVFILGATNRVDLLD 352
+F DE+ L+ R+ +E + D V+ ++ + T + ++GAT R L+
Sbjct: 94 LFIDEIHRLS-RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLIT 152
Query: 353 PAIL 356
+L
Sbjct: 153 APLL 156
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCV 296
LLL+GPPG GKT +A +A E +N GP + + ++ + + +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEEG-DI 93
Query: 297 VFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQ----DVFILGATNRVDLLD 352
+F DE+ L+ R+ +E + D V+ ++ + T + ++GAT R L+
Sbjct: 94 LFIDEIHRLS-RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLIT 152
Query: 353 PAIL 356
+L
Sbjct: 153 APLL 156
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCV 296
LLL+GPPG GKT +A +A E +N GP + + G + N + +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI--EKPGDLAAILANSLEEG-----DI 93
Query: 297 VFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQ----DVFILGATNRVDLLD 352
+F DE+ L+ R+ +E + D V+ ++ + T + ++GAT R L+
Sbjct: 94 LFIDEIHRLS-RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLIT 152
Query: 353 PAIL 356
+L
Sbjct: 153 APLL 156
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 237 LLLYGPPGTGKTLIAKAVATE--CRMNFLAVKGPELLNKYIGQSE---ENIRNVFLKARS 291
+LL GPPGTGKT +A A+A E ++ F + G E+ + I ++E EN R + R
Sbjct: 66 VLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRA-IGLRI 124
Query: 292 AAPCVVFFDELDSLAP 307
V+ E+ L P
Sbjct: 125 KETKEVYEGEVTELTP 140
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK 273
+LL GPPG GKT +A +A+E + N GP L+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK 273
+LL GPPG GKT +A +A+E + N GP L+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK 273
+LL GPPG GKT +A +A+E + N GP L+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK 273
+LL GPPG GKT +A +A+E + N GP L+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK 273
+LL GPPG GKT +A +A+E + N GP L+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 15/74 (20%)
Query: 238 LLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL-----------NKYIGQSEENIRNVF 286
+L G PG GKT IA+ +A + N + PE+L KY G+ E+ ++ V
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEV----PEILRDKRVMTLDMGTKYRGEFEDRLKKVM 260
Query: 287 LKARSAAPCVVFFD 300
+ R A ++F D
Sbjct: 261 DEIRQAGNIILFID 274
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 15/74 (20%)
Query: 238 LLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL-----------NKYIGQSEENIRNVF 286
+L G PG GKT IA+ +A + N + PE+L KY G+ E+ ++ V
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEV----PEILRDKRVMTLDMGTKYRGEFEDRLKKVM 260
Query: 287 LKARSAAPCVVFFD 300
+ R A ++F D
Sbjct: 261 DEIRQAGNIILFID 274
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSE----ENIRNVFLKA-RS 291
+LL GPP +GKT +A +A E F+ + P +K IG SE + ++ +F A +S
Sbjct: 66 VLLEGPPHSGKTALAAKIAEESNFPFIKICSP---DKMIGFSETAKCQAMKKIFDDAYKS 122
Query: 292 AAPCVVFFD 300
CVV D
Sbjct: 123 QLSCVVVDD 131
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSE----ENIRNVFLKA-RS 291
+LL GPP +GKT +A +A E F+ + P +K IG SE + ++ +F A +S
Sbjct: 67 VLLEGPPHSGKTALAAKIAEESNFPFIKICSP---DKMIGFSETAKCQAMKKIFDDAYKS 123
Query: 292 AAPCVVFFD 300
CVV D
Sbjct: 124 QLSCVVVDD 132
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK 273
+LL GPPG G+T +A +A+E + N GP L+ +
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQ 90
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 230 SGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLA-----VKGPELLNKYIGQSEENIRN 284
SG+ R+ +L YGPPG GKT A VA E + L V+ LLN + + +N+
Sbjct: 74 SGVFRAAML-YGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSV 132
Query: 285 V-FLKARSAAP------CVVFFDELDSLA 306
V + K A V+ DE+D ++
Sbjct: 133 VGYFKHNEEAQNLNGKHFVIIMDEVDGMS 161
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 372 DRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIR--RIITS 429
DR + + + K LS++V L+ V P ++SGADI SIC + A+R R I
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVAR-PDKISGADINSICQESGMLAVRENRYIVL 60
Query: 430 APQVKSAPVIVTMDD 444
A + A V D
Sbjct: 61 AKDFEKAYKTVIKKD 75
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 17/96 (17%)
Query: 237 LLLYGPPGTGKTLIAKAVATEC-----RMNFLAVKGPELLNKYIGQSEENIRNVFLKAR- 290
LL GPPG GKT A A+A E R NFL + + + I E ++ F + +
Sbjct: 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD--ERGINVIREKVKE-FARTKP 105
Query: 291 --SAAPCVVFFDELDSL------APRRGQEDQSSGV 318
A+ ++F DE D+L A RR E SS V
Sbjct: 106 IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNV 141
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN-KYIGQSEEN-IRNVFLKARSAAP 294
+L+ GP G GKT IA+ +A F+ V+ + Y+G+ ++ IR++ A A
Sbjct: 53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAID 112
Query: 295 CV-----VFFDELDSL 305
V VF DE+D +
Sbjct: 113 AVEQNGIVFIDEIDKI 128
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMN--FLAVKGPELLNKYIGQSEENI----RNVFLKAR 290
+L+ G PGTGKT IA +A + F A+ G E+ + + ++E R++ ++ +
Sbjct: 73 VLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIK 132
Query: 291 SAAPCVVFFDELDSLAPR 308
+ A V E+D + R
Sbjct: 133 AGAVHTVSLHEIDVINSR 150
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRS--------GLLLYGPPGTGKTLIA 251
S S E++ + K + E L G N R LL YGPPGTGKT
Sbjct: 4 STEKRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTI 63
Query: 252 KAVATE 257
A+A E
Sbjct: 64 VALARE 69
>pdb|2W58|A Chain A, Crystal Structure Of The Dnai
pdb|2W58|B Chain B, Crystal Structure Of The Dnai
Length = 202
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 231 GLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKYIGQSEENIRNVFL 287
G K GL L+G G GKT + A+A E ++ L V PEL + ++ N L
Sbjct: 51 GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKL 110
Query: 288 KARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLL 327
P ++ LD L G E SS V D V +L
Sbjct: 111 DYIKKVPVLM----LDDL----GAEAMSSWVRDDVFGPIL 142
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 17/19 (89%)
Query: 237 LLLYGPPGTGKTLIAKAVA 255
++L+GPPGTGKT +A+ +A
Sbjct: 53 MILWGPPGTGKTTLAEVIA 71
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 15/79 (18%)
Query: 237 LLLYGPPGTGKTLIAKAVATE-----CRMNFLAVKGPELLNKYIGQSEENIRNVFLKARS 291
LL GPPGTGKT A A+A + R NF+ + + + I I+ AR+
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD--ERGIDVVRHKIKEF---ART 95
Query: 292 A----APC-VVFFDELDSL 305
A AP ++F DE D+L
Sbjct: 96 APIGGAPFKIIFLDEADAL 114
>pdb|1U0J|A Chain A, Crystal Structure Of Aav2 Rep40-adp Complex
Length = 267
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 221 STFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVA 255
S F G KR+ + L+GP TGKT IA+A+A
Sbjct: 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIA 125
>pdb|1S9H|A Chain A, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|B Chain B, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|C Chain C, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
Length = 268
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 221 STFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVA 255
S F G KR+ + L+GP TGKT IA+A+A
Sbjct: 92 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIA 126
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 222 TFRGVNRTSGLKRSGLLLYGP-PGTGKTLIAKAVATECRMNFLAVKGPE 269
TF+ + TS K ++L+ P PGTGKT +AKA+ + + + V G +
Sbjct: 37 TFKSI--TSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 30/93 (32%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYI----GQSEENIRNVFLKARSA 292
+L YGPPGTGKT A+ E + GP+L+ I E I V K ++
Sbjct: 61 MLFYGPPGTGKTSTILALTKE-------LYGPDLMKSRILELNASDERGISIVREKVKNF 113
Query: 293 A---------------PC----VVFFDELDSLA 306
A PC ++ DE DS+
Sbjct: 114 ARLTVSKPSKHDLENYPCPPYKIIILDEADSMT 146
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 15/79 (18%)
Query: 237 LLLYGPPGTGKTLIAKAVATE-----CRMNFLAVKGPELLNKYIGQSEENIRNVFLKARS 291
LL GPPGTGKT A A+A + R NF+ + + + I I+ AR+
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD--ERGIDVVRHKIKEF---ART 95
Query: 292 A----APC-VVFFDELDSL 305
A AP ++F DE D+L
Sbjct: 96 APIGGAPFKIIFLDEADAL 114
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 237 LLLYGPPGTGKTLIAKAVATE------CRMNFLAVKGPELLNKYIGQSEENIR-----NV 285
L+L GPPG+GKT+ + +NF + PELL K E R V
Sbjct: 1307 LILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETV 1366
Query: 286 FLKARSAAPCVVFFDELD 303
+ VVF DE++
Sbjct: 1367 LRPTQLGKWLVVFCDEIN 1384
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 22/139 (15%)
Query: 169 QGINKRDLQKEDFQQIYDDLQSRYSDQLDAPSVPNVSWEDIGGLSKLKAEILSTFRGVNR 228
Q +N+ DL+ + + L+ Y ++LD P V L E+L ++R
Sbjct: 1598 QPVNRSDLR----EYVKARLKVFYEEELDVPLV-------------LFNEVLDHILRIDR 1640
Query: 229 TSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQS-EENIRNVFL 287
+ LL G G GK+++++ VA MN L++ ++ N Y ++++R +
Sbjct: 1641 VFRQPQGHALLIGVSGGGKSVLSRFVAW---MNGLSIYTIKVNNNYKSSDFDDDLRMLLK 1697
Query: 288 KARSAAPCVVF-FDELDSL 305
+A + F FDE + L
Sbjct: 1698 RAGCKEEKICFIFDESNVL 1716
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 237 LLLYGPPGTGKTLIAKAVATE------CRMNFLAVKGPELLNKYIGQSEENIR-----NV 285
L+L GPPG+GKT+ + +NF + PELL K E R V
Sbjct: 1307 LILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETV 1366
Query: 286 FLKARSAAPCVVFFDELD 303
+ VVF DE++
Sbjct: 1367 LRPTQLGKWLVVFCDEIN 1384
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 22/139 (15%)
Query: 169 QGINKRDLQKEDFQQIYDDLQSRYSDQLDAPSVPNVSWEDIGGLSKLKAEILSTFRGVNR 228
Q +N+ DL+ + + L+ Y ++LD P V L E+L ++R
Sbjct: 1598 QPVNRSDLR----EYVKARLKVFYEEELDVPLV-------------LFNEVLDHILRIDR 1640
Query: 229 TSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQS-EENIRNVFL 287
+ LL G G GK+++++ VA MN L++ ++ N Y ++++R +
Sbjct: 1641 VFRQPQGHALLIGVSGGGKSVLSRFVAW---MNGLSIYTIKVNNNYKSSDFDDDLRMLLK 1697
Query: 288 KARSAAPCVVF-FDELDSL 305
+A + F FDE + L
Sbjct: 1698 RAGCKEEKICFIFDESNVL 1716
>pdb|1BDB|A Chain A, Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase From
Pseudomonas Sp. Lb400
Length = 277
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARS----- 291
L+ G G G+ L+ + VA ++ L K E L + +N+ + RS
Sbjct: 9 LITGGASGLGRALVDRFVAEGAKVAVLD-KSAERLAELETDHGDNVLGIVGDVRSLEDQK 67
Query: 292 --AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMD 331
A+ CV F ++D+L P G D S+ ++D L A D
Sbjct: 68 QAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFD 109
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 238 LLYGPPGTGKTLIAKAVATECRMNFL--AVKGPELLN----------KYIGQSEENIRNV 285
+L G PG GKT I + +A + + ++KG +L++ KY G EE ++++
Sbjct: 47 ILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSI 106
Query: 286 FLKARSA-APCVVFFDELDSL 305
+ + A V+F DE+ ++
Sbjct: 107 LKEVQDAEGQVVMFIDEIHTV 127
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 226 VNRTSGLKRSGLLLYGPPGTGKTLIAKAVA----TECRMNFLAVKGPE 269
V +T+ ++ +LL G PGTGK+++ +A+A TE + L PE
Sbjct: 52 VIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE 99
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 241 GPPGTGKTLIA-KAVATECRMNF------LAVKGPELLNKYIGQSEENIRNVFLKARSAA 293
G PGTGKT +A K R+ + ++V +L+ +YIG + + V +A
Sbjct: 74 GNPGTGKTTVALKXAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAXGG- 132
Query: 294 PCVVFFDE 301
V+F DE
Sbjct: 133 --VLFIDE 138
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
Query: 238 LLYGPPGTGKTLIAKAVATECRMNFL--AVKGPELLN----------KYIGQSEENIRNV 285
+L G PG GKT I + +A + +KG +++ KY G+ EE ++ V
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 286 FLK-ARSAAPCVVFFDELDSL 305
+ +S ++F DEL ++
Sbjct: 118 IQEVVQSQGEVILFIDELHTV 138
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 241 GPPGTGKTLIA-KAVATECRMNF------LAVKGPELLNKYIGQSEENIRNVFLKARSAA 293
G PGTGKT +A K R+ + ++V +L+ +YIG + + V +A
Sbjct: 67 GNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGG- 125
Query: 294 PCVVFFDE 301
V+F DE
Sbjct: 126 --VLFIDE 131
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 241 GPPGTGKTLIA-KAVATECRMNF------LAVKGPELLNKYIGQSEENIRNVFLKARSAA 293
G PGTGKT +A K R+ + ++V +L+ +YIG + + V +A
Sbjct: 74 GNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGG- 132
Query: 294 PCVVFFDE 301
V+F DE
Sbjct: 133 --VLFIDE 138
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
Query: 238 LLYGPPGTGKTLIAKAVATECRMNFL--AVKGPELLN----------KYIGQSEENIRNV 285
+L G PG GKT I + +A + +KG +++ KY G+ EE ++ V
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 286 FLK-ARSAAPCVVFFDELDSL 305
+ +S ++F DEL ++
Sbjct: 255 IQEVVQSQGEVILFIDELHTV 275
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 234 RSGLLLYGPPGTGKTLI 250
+ G++L GPPG+GKT+I
Sbjct: 1048 KRGIILCGPPGSGKTMI 1064
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 17/96 (17%)
Query: 238 LLYGPPGTGKTLIAKAVATECRMNFL--AVKGPELL----------NKYIGQSEENIRNV 285
+L G PG GKT I + +A + +KG +L KY G+ EE ++ V
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 286 FLK-ARSAAPCVVFFDELDSLAPRRGQEDQSSGVMD 320
A+ ++F DEL ++ ++ G MD
Sbjct: 107 LNDLAKQEGNVILFIDELHTMVG----AGKADGAMD 138
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 234 RSGLLLYGPPGTGKTLI 250
+ G++L GPPG+GKT+I
Sbjct: 1267 KRGIILCGPPGSGKTMI 1283
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 121/306 (39%), Gaps = 47/306 (15%)
Query: 92 LVLIRKQIQKLFLKTINVLPLTEPER---------RLLIQ--YQLDCLGGDYGFDASLV- 139
LV +R++++ +T VLP +E ER R+L + + + G + A+++
Sbjct: 51 LVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLV 110
Query: 140 ----EYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRD-LQKED-FQQIYDDLQSRYS 193
E S +H+++ RL V N + G K + Q D Q + Q+
Sbjct: 111 AIFSEQESQAAYLLRKHEVS---RLDVVN-FISHGTRKDEPTQSSDPGSQPNSEEQAGGE 166
Query: 194 DQLDAPSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKA 253
++L+ + +GG+ L R + +++ LL G G GKT IA+
Sbjct: 167 ERLENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEG 226
Query: 254 VA------------TECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDE 301
+A +C + L + KY G E+ + + + ++F DE
Sbjct: 227 LAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDE 286
Query: 302 LDSL----APRRGQEDQ--------SSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349
+ ++ A GQ D SSG + + S E + +D + ++D
Sbjct: 287 IHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIF-EKDRALARRFQKID 345
Query: 350 LLDPAI 355
+ +P+I
Sbjct: 346 ITEPSI 351
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN-KYIGQSEENI 282
+L+ GP G GKT IA+ +A F+ V+ + Y+G+ ++I
Sbjct: 53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSI 99
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN-KYIGQSEENI 282
+L+ GP G GKT IA+ +A F+ V+ + Y+G+ ++I
Sbjct: 52 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSI 98
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN-KYIGQSEENI 282
+L+ GP G GKT IA+ +A F+ V+ + Y+G+ ++I
Sbjct: 59 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSI 105
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN-KYIGQSEENI 282
+L+ GP G GKT IA+ +A F+ V+ + Y+G+ ++I
Sbjct: 53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSI 99
>pdb|1ZP6|A Chain A, Crystal Structure Of Atu3015, A Putative Cytidylate Kinase
From Agrobacterium Tumefaciens, Northeast Structural
Genomics Target Atr62
Length = 191
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 226 VNRTSGLKRSGLLLYGPPGTGKTLIAKAVAT 256
+N T L + LLL G PG+GK+ IA+A+A
Sbjct: 1 MNMTDDLGGNILLLSGHPGSGKSTIAEALAN 31
>pdb|1O9J|A Chain A, The X-Ray Crystal Structure Of Eta-Crystallin
pdb|1O9J|B Chain B, The X-Ray Crystal Structure Of Eta-Crystallin
pdb|1O9J|C Chain C, The X-Ray Crystal Structure Of Eta-Crystallin
pdb|1O9J|D Chain D, The X-Ray Crystal Structure Of Eta-Crystallin
Length = 501
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 243 PGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQS--EENIRNVFLKARSAAPCVVFFD 300
PG G T A A+++ ++ +A G + K I ++ + N++ V L+ + PC+VF D
Sbjct: 223 PGYGPTAGA-AISSHMDVDKVAFTGSTEVGKMIQEAAAKSNLKRVTLELGAKNPCIVFAD 281
Query: 301 -ELDS 304
+LDS
Sbjct: 282 ADLDS 286
>pdb|1BXS|A Chain A, Sheep Liver Class 1 Aldehyde Dehydrogenase With Nad Bound
pdb|1BXS|B Chain B, Sheep Liver Class 1 Aldehyde Dehydrogenase With Nad Bound
pdb|1BXS|C Chain C, Sheep Liver Class 1 Aldehyde Dehydrogenase With Nad Bound
pdb|1BXS|D Chain D, Sheep Liver Class 1 Aldehyde Dehydrogenase With Nad Bound
Length = 501
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 243 PGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQS--EENIRNVFLKARSAAPCVVFFD 300
PG G T A A+++ ++ +A G + K I ++ + N++ V L+ +PC+VF D
Sbjct: 223 PGYGPTAGA-AISSHMDVDKVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFAD 281
>pdb|2ZRH|A Chain A, Msreca Q196a Form Iv
pdb|2ZRI|A Chain A, Msreca Q196a Adp Form Iv
pdb|2ZRJ|A Chain A, Msreca Q196a Atpgs Form Iv
pdb|2ZRK|A Chain A, Msreca Q196a Datp Form Iv
pdb|2ZRL|A Chain A, Msreca Q196a Datp Form Ii'
Length = 349
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 24/128 (18%)
Query: 230 SGLKRSGLL-LYGPPGTGKTLIA-KAVATECRMNFLA------------------VKGPE 269
GL R ++ +YGP +GKT +A AVA +A V
Sbjct: 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDS 115
Query: 270 LLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQE----DQSSGVMDRVVSQ 325
LL E+ + + RS A ++ D + +L PR E D G+ R++SQ
Sbjct: 116 LLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQ 175
Query: 326 LLAEMDGV 333
L +M G
Sbjct: 176 ALRKMTGA 183
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In Complex
With Dna
Length = 387
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 231 GLKRSGLLLYGPPGTGKTLIAKAVAT--ECRMNFLAV 265
G K S LLYG GTGKT +A+ V E R + L V
Sbjct: 41 GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGV 77
>pdb|2ZRC|A Chain A, Msreca Q196n Form Iv
pdb|2ZRD|A Chain A, Msreca Q196n Adp Form Iv
pdb|2ZRE|A Chain A, Msreca Q196n Atpgs Form Iv
pdb|2ZRF|A Chain A, Msreca Q196n Datp Form Iv
pdb|2ZRG|A Chain A, Msreca Q196n Datp Form Ii'
Length = 349
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 24/128 (18%)
Query: 230 SGLKRSGLL-LYGPPGTGKTLIA-KAVATECRMNFLA------------------VKGPE 269
GL R ++ +YGP +GKT +A AVA +A V
Sbjct: 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDS 115
Query: 270 LLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQE----DQSSGVMDRVVSQ 325
LL E+ + + RS A ++ D + +L PR E D G+ R++SQ
Sbjct: 116 LLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQ 175
Query: 326 LLAEMDGV 333
L +M G
Sbjct: 176 ALRKMTGA 183
>pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex
pdb|1G19|A Chain A, Structure Of Reca Protein
pdb|1MO3|A Chain A, Reca-Adp Complex
pdb|1MO4|A Chain A, Reca-Atp-Gamma-S Complex
pdb|1MO5|A Chain A, Reca-Atp-Gamma-S-Mg Complex
pdb|1MO6|A Chain A, Reca-datp-mg Complex
Length = 350
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 24/128 (18%)
Query: 230 SGLKRSGLL-LYGPPGTGKTLIA-KAVATECRMNFLA------------------VKGPE 269
GL R ++ +YGP +GKT +A AVA +A V
Sbjct: 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDS 114
Query: 270 LLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQE----DQSSGVMDRVVSQ 325
LL E+ + + RS A +V D + +L PR E D G+ R++SQ
Sbjct: 115 LLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQ 174
Query: 326 LLAEMDGV 333
L +M G
Sbjct: 175 ALRKMTGA 182
>pdb|2ZR0|A Chain A, Msreca-Q196e Mutant
pdb|2ZR9|A Chain A, Msreca Q196e Datp Form Iv
pdb|2ZRA|A Chain A, Msreca Q196e Atpgs
pdb|2ZRB|A Chain A, Msreca Q196e Form Ii'
Length = 349
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 24/128 (18%)
Query: 230 SGLKRSGLL-LYGPPGTGKTLIA-KAVATECRMNFLA------------------VKGPE 269
GL R ++ +YGP +GKT +A AVA +A V
Sbjct: 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDS 115
Query: 270 LLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQE----DQSSGVMDRVVSQ 325
LL E+ + + RS A ++ D + +L PR E D G+ R++SQ
Sbjct: 116 LLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQ 175
Query: 326 LLAEMDGV 333
L +M G
Sbjct: 176 ALRKMTGA 183
>pdb|1UBC|A Chain A, Structure Of Reca Protein
pdb|1UBE|A Chain A, Msreca-Adp Complex
pdb|1UBF|A Chain A, Msreca-Atpgs Complex
pdb|1UBG|A Chain A, Msreca-Datp Complex
pdb|2G88|A Chain A, Msreca-datp Complex
pdb|2ODN|A Chain A, Msreca-Datp Complex
pdb|2ODW|A Chain A, Msreca-Atp-Gama-S Complex
pdb|2OE2|A Chain A, Msreca-Native-Low Humidity 95%
pdb|2OEP|A Chain A, Msreca-adp-complex
pdb|2OES|A Chain A, Msreca-Native-Ssb
pdb|2OFO|A Chain A, Msreca-native
pdb|2ZR7|A Chain A, Msreca Native Form Ii'
pdb|2ZRM|A Chain A, Msreca Datp Form Iv
pdb|2ZRN|A Chain A, Msreca Form Iv
pdb|2ZRO|A Chain A, Msreca Adp Form Iv
pdb|2ZRP|A Chain A, Msreca Datp Form Ii'
Length = 349
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 24/128 (18%)
Query: 230 SGLKRSGLL-LYGPPGTGKTLIA-KAVATECRMNFLA------------------VKGPE 269
GL R ++ +YGP +GKT +A AVA +A V
Sbjct: 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDS 115
Query: 270 LLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQE----DQSSGVMDRVVSQ 325
LL E+ + + RS A ++ D + +L PR E D G+ R++SQ
Sbjct: 116 LLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQ 175
Query: 326 LLAEMDGV 333
L +M G
Sbjct: 176 ALRKMTGA 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,571,579
Number of Sequences: 62578
Number of extensions: 538602
Number of successful extensions: 1853
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1691
Number of HSP's gapped (non-prelim): 117
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)