Query psy450
Match_columns 478
No_of_seqs 419 out of 3849
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 18:46:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733|consensus 100.0 1.6E-81 3.6E-86 618.8 39.1 434 7-467 251-778 (802)
2 KOG0730|consensus 100.0 1.6E-76 3.4E-81 592.3 33.0 407 19-469 254-685 (693)
3 KOG0736|consensus 100.0 3.7E-68 7.9E-73 536.5 37.6 428 18-468 466-942 (953)
4 TIGR01243 CDC48 AAA family ATP 100.0 1.7E-59 3.6E-64 508.5 40.9 424 19-469 248-721 (733)
5 KOG0735|consensus 100.0 2.3E-55 4.9E-60 439.9 38.1 386 28-430 479-893 (952)
6 COG0464 SpoVK ATPases of the A 100.0 9.9E-52 2.1E-56 430.8 38.2 404 20-463 54-488 (494)
7 COG1222 RPT1 ATP-dependent 26S 100.0 6.3E-51 1.4E-55 381.9 24.7 245 198-460 142-394 (406)
8 CHL00195 ycf46 Ycf46; Provisio 100.0 1.1E-43 2.4E-48 361.8 38.4 375 45-462 82-467 (489)
9 KOG0738|consensus 100.0 3.4E-45 7.3E-50 345.2 22.2 258 199-467 204-478 (491)
10 KOG0733|consensus 100.0 1.7E-43 3.6E-48 349.9 23.5 223 202-428 185-417 (802)
11 KOG0734|consensus 100.0 7.4E-43 1.6E-47 340.3 20.6 233 202-448 299-537 (752)
12 KOG0739|consensus 100.0 8.4E-42 1.8E-46 311.7 14.0 259 198-468 124-426 (439)
13 KOG0727|consensus 100.0 2.5E-40 5.4E-45 295.7 21.2 239 198-448 146-392 (408)
14 KOG0728|consensus 100.0 1.7E-39 3.6E-44 290.1 20.4 239 198-448 138-384 (404)
15 COG1223 Predicted ATPase (AAA+ 100.0 1.1E-39 2.3E-44 292.8 19.2 242 200-462 114-359 (368)
16 KOG0731|consensus 100.0 5.7E-39 1.2E-43 332.0 23.3 238 199-448 303-549 (774)
17 PTZ00454 26S protease regulato 100.0 3.5E-38 7.6E-43 315.2 26.3 246 198-461 136-389 (398)
18 KOG0726|consensus 100.0 1.4E-39 3E-44 296.4 14.7 238 199-448 177-422 (440)
19 KOG0652|consensus 100.0 4E-39 8.7E-44 289.3 17.0 239 198-448 162-408 (424)
20 KOG0737|consensus 100.0 4.4E-39 9.5E-44 304.2 17.9 260 198-469 83-370 (386)
21 PRK03992 proteasome-activating 100.0 4.3E-37 9.3E-42 309.2 26.1 250 198-465 122-379 (389)
22 KOG0729|consensus 100.0 1.3E-37 2.9E-42 280.2 16.8 247 198-462 168-422 (435)
23 COG0465 HflB ATP-dependent Zn 100.0 7.9E-37 1.7E-41 311.4 20.4 236 201-448 144-386 (596)
24 PTZ00361 26 proteosome regulat 100.0 4.5E-36 9.7E-41 301.6 22.5 243 199-459 175-425 (438)
25 KOG0741|consensus 100.0 8.4E-36 1.8E-40 290.8 19.7 341 19-381 293-683 (744)
26 TIGR01241 FtsH_fam ATP-depende 100.0 3.3E-35 7.1E-40 305.6 24.4 245 198-460 46-297 (495)
27 KOG0741|consensus 100.0 1.3E-35 2.8E-40 289.5 13.9 262 199-468 211-502 (744)
28 TIGR01242 26Sp45 26S proteasom 100.0 7.1E-34 1.5E-38 284.9 25.6 239 198-448 113-359 (364)
29 KOG0651|consensus 100.0 3.1E-35 6.7E-40 270.6 11.5 240 201-452 126-373 (388)
30 CHL00176 ftsH cell division pr 100.0 9E-34 1.9E-38 297.8 22.7 237 200-448 176-419 (638)
31 TIGR03689 pup_AAA proteasome A 100.0 1.8E-33 4E-38 286.2 23.7 246 198-451 173-477 (512)
32 KOG0740|consensus 100.0 1.5E-33 3.2E-38 276.5 15.2 259 200-470 146-416 (428)
33 KOG0730|consensus 100.0 1.5E-32 3.3E-37 276.3 21.4 232 202-461 180-419 (693)
34 PRK10733 hflB ATP-dependent me 100.0 4E-32 8.7E-37 288.7 24.7 245 200-462 145-396 (644)
35 PLN00020 ribulose bisphosphate 100.0 3.1E-31 6.7E-36 253.6 21.5 217 204-426 112-355 (413)
36 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.7E-31 3.6E-36 294.3 20.9 195 234-448 1630-1873(2281)
37 KOG0732|consensus 100.0 2.2E-31 4.7E-36 282.6 20.3 312 139-465 194-532 (1080)
38 TIGR01243 CDC48 AAA family ATP 100.0 2.1E-30 4.6E-35 281.4 27.0 252 201-462 172-439 (733)
39 COG1222 RPT1 ATP-dependent 26S 100.0 1.7E-30 3.7E-35 244.5 15.8 155 17-191 219-395 (406)
40 TIGR02639 ClpA ATP-dependent C 100.0 7.1E-27 1.5E-31 253.1 28.6 384 18-428 248-717 (731)
41 PRK11034 clpA ATP-dependent Cl 100.0 4.7E-26 1E-30 243.5 29.3 380 22-428 258-721 (758)
42 KOG0736|consensus 99.9 1.7E-27 3.7E-32 242.2 12.6 173 2-193 728-937 (953)
43 KOG0738|consensus 99.9 6.6E-27 1.4E-31 221.6 12.3 171 6-193 272-474 (491)
44 KOG0732|consensus 99.9 3.3E-26 7.2E-31 243.3 16.3 284 6-309 331-669 (1080)
45 KOG0734|consensus 99.9 2.5E-26 5.4E-31 225.1 11.5 150 21-189 374-542 (752)
46 TIGR03345 VI_ClpV1 type VI sec 99.9 1.5E-22 3.3E-27 220.8 31.1 370 29-428 265-836 (852)
47 COG1223 Predicted ATPase (AAA+ 99.9 2.4E-24 5.2E-29 194.2 13.3 153 18-190 186-357 (368)
48 KOG0735|consensus 99.9 8.1E-25 1.8E-29 220.9 10.3 145 3-168 725-888 (952)
49 CHL00095 clpC Clp protease ATP 99.9 3.2E-22 6.9E-27 219.3 29.9 377 22-428 251-787 (821)
50 KOG0739|consensus 99.9 1.6E-24 3.5E-29 198.7 8.2 144 6-168 193-353 (439)
51 TIGR03346 chaperone_ClpB ATP-d 99.9 1.1E-21 2.5E-26 215.6 31.8 381 22-430 245-833 (852)
52 COG0542 clpA ATP-binding subun 99.9 2.4E-22 5.3E-27 210.5 25.0 383 16-428 235-760 (786)
53 KOG0652|consensus 99.9 4.9E-23 1.1E-27 185.7 11.8 164 6-193 232-417 (424)
54 TIGR02881 spore_V_K stage V sp 99.9 8.5E-22 1.8E-26 188.6 20.8 227 206-445 5-261 (261)
55 PRK10865 protein disaggregatio 99.9 1.4E-20 3E-25 206.2 30.8 208 206-429 567-835 (857)
56 CHL00181 cbbX CbbX; Provisiona 99.9 3.1E-21 6.8E-26 185.8 22.0 231 206-448 22-282 (287)
57 KOG0728|consensus 99.9 2.2E-22 4.8E-27 180.6 12.0 153 17-189 215-389 (404)
58 PF00004 AAA: ATPase family as 99.9 8E-22 1.7E-26 168.6 13.6 130 237-369 1-132 (132)
59 KOG0737|consensus 99.9 1.4E-22 3E-27 192.4 9.5 144 6-168 154-314 (386)
60 COG0465 HflB ATP-dependent Zn 99.9 2.3E-22 4.9E-27 205.8 11.1 161 7-191 211-393 (596)
61 KOG0727|consensus 99.9 8E-22 1.7E-26 177.2 12.6 152 18-189 224-397 (408)
62 TIGR02880 cbbX_cfxQ probable R 99.9 1.1E-20 2.3E-25 182.4 20.9 229 208-448 23-281 (284)
63 COG0464 SpoVK ATPases of the A 99.9 1.2E-21 2.5E-26 204.8 13.8 165 6-191 303-486 (494)
64 KOG0731|consensus 99.9 1.2E-21 2.5E-26 203.8 13.0 161 7-191 372-556 (774)
65 KOG0726|consensus 99.9 6.8E-22 1.5E-26 181.0 8.5 154 17-190 253-428 (440)
66 KOG0743|consensus 99.9 2E-20 4.4E-25 182.6 18.0 213 204-427 198-428 (457)
67 KOG0744|consensus 99.9 2.2E-21 4.8E-26 180.2 10.7 230 205-449 140-411 (423)
68 KOG0742|consensus 99.9 2.1E-20 4.5E-25 178.5 17.5 211 201-419 349-589 (630)
69 CHL00195 ycf46 Ycf46; Provisio 99.9 5.3E-21 1.2E-25 195.6 14.2 155 17-192 293-467 (489)
70 PTZ00454 26S protease regulato 99.8 1.5E-20 3.2E-25 188.4 15.8 154 18-191 214-389 (398)
71 CHL00206 ycf2 Ycf2; Provisiona 99.8 4.2E-20 9.1E-25 205.1 14.8 155 24-192 1713-1881(2281)
72 PF05496 RuvB_N: Holliday junc 99.8 2.6E-19 5.6E-24 161.5 17.1 187 202-415 19-222 (233)
73 PRK03992 proteasome-activating 99.8 9.4E-20 2E-24 183.6 15.9 158 18-195 200-379 (389)
74 TIGR00763 lon ATP-dependent pr 99.8 9.2E-19 2E-23 191.0 23.4 228 207-448 320-582 (775)
75 KOG0729|consensus 99.8 2.2E-20 4.9E-25 169.1 8.6 163 17-199 245-429 (435)
76 PTZ00361 26 proteosome regulat 99.8 1.7E-19 3.6E-24 181.9 13.3 153 19-191 253-427 (438)
77 TIGR01241 FtsH_fam ATP-depende 99.8 6E-19 1.3E-23 183.8 16.2 151 20-190 125-297 (495)
78 PRK10733 hflB ATP-dependent me 99.8 5E-19 1.1E-23 188.7 15.5 150 22-191 224-395 (644)
79 KOG0740|consensus 99.8 2.4E-19 5.2E-24 176.6 12.1 163 18-194 221-410 (428)
80 CHL00176 ftsH cell division pr 99.8 3.8E-18 8.3E-23 180.0 15.1 144 28-190 260-425 (638)
81 PRK00080 ruvB Holliday junctio 99.8 2.8E-17 6.1E-22 162.7 20.2 213 202-448 20-246 (328)
82 TIGR00635 ruvB Holliday juncti 99.8 6.5E-17 1.4E-21 158.8 20.7 207 205-448 2-225 (305)
83 COG2255 RuvB Holliday junction 99.7 1.2E-16 2.6E-21 146.9 18.9 198 201-422 20-231 (332)
84 TIGR01242 26Sp45 26S proteasom 99.7 2.3E-17 4.9E-22 165.6 14.6 150 19-188 192-363 (364)
85 COG0466 Lon ATP-dependent Lon 99.7 6.2E-16 1.4E-20 158.3 21.9 224 207-448 323-580 (782)
86 TIGR02639 ClpA ATP-dependent C 99.7 9.8E-17 2.1E-21 174.3 17.2 227 203-454 178-431 (731)
87 KOG0651|consensus 99.7 3.8E-18 8.2E-23 158.1 4.0 153 17-189 200-374 (388)
88 PRK10787 DNA-binding ATP-depen 99.7 3.3E-16 7.2E-21 169.4 18.8 223 208-448 323-578 (784)
89 KOG2004|consensus 99.7 9E-16 1.9E-20 156.3 19.9 164 207-384 411-596 (906)
90 COG2256 MGS1 ATPase related to 99.7 3.2E-16 6.9E-21 150.9 15.4 148 201-382 18-174 (436)
91 TIGR02928 orc1/cdc6 family rep 99.7 5.3E-16 1.2E-20 156.3 17.5 238 206-475 14-291 (365)
92 PRK11034 clpA ATP-dependent Cl 99.7 8.6E-16 1.9E-20 165.0 17.5 226 205-454 184-435 (758)
93 TIGR03689 pup_AAA proteasome A 99.7 4.3E-16 9.3E-21 159.4 14.3 155 19-189 262-479 (512)
94 TIGR02902 spore_lonB ATP-depen 99.7 1.6E-15 3.4E-20 158.5 17.2 210 200-448 58-328 (531)
95 PTZ00112 origin recognition co 99.7 2.4E-15 5.3E-20 157.6 17.1 236 207-477 755-1025(1164)
96 PRK00411 cdc6 cell division co 99.7 5.8E-15 1.2E-19 150.3 19.5 241 203-476 26-300 (394)
97 PLN00020 ribulose bisphosphate 99.7 6.1E-16 1.3E-20 149.0 11.3 139 18-168 183-354 (413)
98 PRK12323 DNA polymerase III su 99.6 1.8E-15 4E-20 156.1 15.0 185 201-417 10-228 (700)
99 PRK14956 DNA polymerase III su 99.6 5.6E-15 1.2E-19 149.1 17.7 172 201-402 12-212 (484)
100 PRK07003 DNA polymerase III su 99.6 6.7E-15 1.5E-19 153.8 18.5 187 201-419 10-225 (830)
101 PRK04195 replication factor C 99.6 8.2E-15 1.8E-19 152.3 18.8 192 199-420 6-205 (482)
102 PRK00149 dnaA chromosomal repl 99.6 3.5E-15 7.6E-20 153.9 15.7 200 199-421 114-329 (450)
103 PRK14962 DNA polymerase III su 99.6 8.3E-15 1.8E-19 150.1 17.3 202 201-448 8-238 (472)
104 TIGR00362 DnaA chromosomal rep 99.6 1E-14 2.3E-19 148.6 18.0 201 200-422 103-318 (405)
105 TIGR03345 VI_ClpV1 type VI sec 99.6 1.1E-14 2.4E-19 159.4 16.8 198 203-420 183-408 (852)
106 PRK14088 dnaA chromosomal repl 99.6 1.2E-14 2.6E-19 148.6 16.0 202 199-419 97-310 (440)
107 PRK06645 DNA polymerase III su 99.6 3.6E-14 7.8E-19 146.0 18.8 212 200-448 14-252 (507)
108 PRK14960 DNA polymerase III su 99.6 3E-14 6.5E-19 147.6 18.1 187 201-419 9-224 (702)
109 PRK07940 DNA polymerase III su 99.6 2.2E-14 4.7E-19 143.7 16.6 180 205-413 3-213 (394)
110 PRK05342 clpX ATP-dependent pr 99.6 6.4E-14 1.4E-18 141.0 19.8 233 208-448 72-401 (412)
111 PRK10865 protein disaggregatio 99.6 1.4E-14 3.1E-19 159.1 16.2 169 203-390 174-360 (857)
112 PRK07994 DNA polymerase III su 99.6 3.5E-14 7.6E-19 149.0 18.2 185 201-417 10-223 (647)
113 PRK12422 chromosomal replicati 99.6 5.1E-14 1.1E-18 143.6 18.8 204 200-419 104-318 (445)
114 PRK14961 DNA polymerase III su 99.6 6.3E-14 1.4E-18 140.4 19.1 187 201-419 10-225 (363)
115 PRK14086 dnaA chromosomal repl 99.6 4.1E-14 9E-19 146.5 18.1 197 201-419 282-493 (617)
116 TIGR02903 spore_lon_C ATP-depe 99.6 4.2E-13 9.1E-18 142.5 26.1 221 201-449 148-427 (615)
117 PRK14949 DNA polymerase III su 99.6 4.1E-14 8.9E-19 150.7 18.3 193 201-419 10-225 (944)
118 PRK13342 recombination factor 99.6 4.6E-14 9.9E-19 143.9 18.1 196 201-448 6-215 (413)
119 PRK14958 DNA polymerase III su 99.6 2.8E-14 6E-19 147.8 16.2 187 201-419 10-225 (509)
120 PRK12402 replication factor C 99.6 7.2E-14 1.6E-18 139.2 18.5 208 199-448 7-245 (337)
121 COG1474 CDC6 Cdc6-related prot 99.6 8.1E-14 1.8E-18 138.3 17.9 237 207-477 17-284 (366)
122 TIGR03346 chaperone_ClpB ATP-d 99.6 5.6E-14 1.2E-18 155.0 18.2 172 202-392 168-357 (852)
123 PF05673 DUF815: Protein of un 99.6 4E-13 8.8E-18 123.2 20.1 188 200-411 20-238 (249)
124 PF00308 Bac_DnaA: Bacterial d 99.6 3.7E-14 8.1E-19 131.7 13.6 198 201-419 2-213 (219)
125 KOG0989|consensus 99.6 2E-14 4.3E-19 133.7 11.6 184 199-415 28-228 (346)
126 CHL00095 clpC Clp protease ATP 99.6 5.5E-14 1.2E-18 154.7 16.8 162 204-384 176-354 (821)
127 PLN03025 replication factor C 99.6 1.5E-13 3.2E-18 135.6 18.1 184 199-418 5-201 (319)
128 PRK14964 DNA polymerase III su 99.6 8.2E-14 1.8E-18 142.2 16.6 187 201-419 7-222 (491)
129 PHA02544 44 clamp loader, smal 99.6 2E-13 4.2E-18 134.8 18.8 160 198-383 12-172 (316)
130 PRK06893 DNA replication initi 99.5 3.3E-13 7.2E-18 126.5 18.6 211 198-448 7-226 (229)
131 PRK08084 DNA replication initi 99.5 2.4E-13 5.2E-18 127.9 17.6 206 200-448 15-232 (235)
132 PRK14963 DNA polymerase III su 99.5 2.5E-13 5.4E-18 140.4 19.2 172 201-402 8-207 (504)
133 PRK05642 DNA replication initi 99.5 5.7E-13 1.2E-17 125.2 19.7 212 198-448 10-231 (234)
134 PRK08691 DNA polymerase III su 99.5 1.4E-13 3.1E-18 143.9 17.1 187 201-419 10-225 (709)
135 PRK05201 hslU ATP-dependent pr 99.5 1.3E-13 2.8E-18 136.1 15.7 168 208-380 16-344 (443)
136 TIGR00390 hslU ATP-dependent p 99.5 1.3E-13 2.9E-18 135.9 15.6 168 208-380 13-342 (441)
137 PRK14952 DNA polymerase III su 99.5 3.1E-13 6.7E-18 141.3 19.2 185 201-417 7-222 (584)
138 PRK14087 dnaA chromosomal repl 99.5 1.8E-13 3.9E-18 140.1 16.7 202 203-423 111-328 (450)
139 PRK05563 DNA polymerase III su 99.5 4.8E-13 1E-17 140.5 20.2 186 201-418 10-224 (559)
140 PRK14959 DNA polymerase III su 99.5 2.5E-13 5.4E-18 141.5 17.3 172 201-402 10-210 (624)
141 PRK14957 DNA polymerase III su 99.5 3.8E-13 8.2E-18 139.3 18.5 186 202-419 11-225 (546)
142 PRK14951 DNA polymerase III su 99.5 2.5E-13 5.3E-18 142.5 17.1 185 201-417 10-228 (618)
143 PRK07764 DNA polymerase III su 99.5 2.8E-13 6E-18 146.8 18.0 172 201-402 9-211 (824)
144 PRK14969 DNA polymerase III su 99.5 1.7E-13 3.6E-18 142.9 15.7 187 201-419 10-225 (527)
145 COG0593 DnaA ATPase involved i 99.5 3.6E-13 7.7E-18 133.3 17.0 204 199-421 79-293 (408)
146 TIGR03420 DnaA_homol_Hda DnaA 99.5 1E-12 2.3E-17 123.2 19.5 204 202-448 10-224 (226)
147 TIGR00382 clpX endopeptidase C 99.5 5.9E-13 1.3E-17 133.3 18.5 235 208-448 78-407 (413)
148 TIGR02397 dnaX_nterm DNA polym 99.5 4.1E-13 9E-18 134.7 17.0 186 201-418 8-222 (355)
149 KOG2028|consensus 99.5 3.9E-13 8.5E-18 127.4 15.4 154 200-384 131-294 (554)
150 PRK06620 hypothetical protein; 99.5 9.7E-13 2.1E-17 121.6 17.8 200 197-448 6-212 (214)
151 PRK07133 DNA polymerase III su 99.5 5.6E-13 1.2E-17 140.8 17.9 191 201-417 12-222 (725)
152 PRK05896 DNA polymerase III su 99.5 5.1E-13 1.1E-17 138.5 16.7 185 201-417 10-223 (605)
153 PRK08903 DnaA regulatory inact 99.5 2.3E-12 5E-17 120.9 19.8 204 197-448 8-222 (227)
154 PRK08727 hypothetical protein; 99.5 1.9E-12 4E-17 121.7 19.1 206 198-448 10-227 (233)
155 PRK14965 DNA polymerase III su 99.5 7.7E-13 1.7E-17 139.6 16.7 172 201-402 10-210 (576)
156 PRK06647 DNA polymerase III su 99.5 1.6E-12 3.4E-17 136.1 18.2 185 201-417 10-223 (563)
157 PRK14955 DNA polymerase III su 99.5 1.1E-12 2.4E-17 132.9 15.9 213 201-448 10-253 (397)
158 PRK14953 DNA polymerase III su 99.5 1.6E-12 3.5E-17 134.0 17.2 192 201-418 10-224 (486)
159 TIGR02640 gas_vesic_GvpN gas v 99.5 2.3E-12 5E-17 123.3 17.0 133 234-384 21-198 (262)
160 PRK08451 DNA polymerase III su 99.5 2.7E-12 5.8E-17 132.4 18.5 187 201-419 8-223 (535)
161 PRK14970 DNA polymerase III su 99.5 2.8E-12 6.2E-17 129.1 18.3 174 201-402 11-199 (367)
162 PRK09111 DNA polymerase III su 99.4 3.3E-12 7.1E-17 134.3 18.6 192 201-418 18-237 (598)
163 PRK06305 DNA polymerase III su 99.4 3.1E-12 6.7E-17 131.1 18.0 172 201-402 11-212 (451)
164 PRK13341 recombination factor 99.4 2.1E-12 4.6E-17 138.4 17.2 203 201-448 22-243 (725)
165 COG2812 DnaX DNA polymerase II 99.4 1.1E-12 2.5E-17 133.4 14.4 193 201-419 10-225 (515)
166 PRK14954 DNA polymerase III su 99.4 5.3E-12 1.1E-16 132.9 18.8 178 201-402 10-218 (620)
167 COG2607 Predicted ATPase (AAA+ 99.4 1E-10 2.2E-15 105.6 24.0 195 174-392 26-247 (287)
168 PRK13407 bchI magnesium chelat 99.4 1.4E-12 3.1E-17 127.6 13.1 162 202-384 3-216 (334)
169 PRK00440 rfc replication facto 99.4 9.2E-12 2E-16 123.0 18.9 203 198-448 8-222 (319)
170 PRK14948 DNA polymerase III su 99.4 6.9E-12 1.5E-16 132.8 18.1 172 201-402 10-212 (620)
171 cd00009 AAA The AAA+ (ATPases 99.4 4.9E-12 1.1E-16 109.4 13.9 137 211-368 2-150 (151)
172 PRK14950 DNA polymerase III su 99.3 2.5E-11 5.3E-16 128.8 17.5 184 201-416 10-223 (585)
173 PRK09087 hypothetical protein; 99.3 1.9E-11 4E-16 114.1 14.6 199 198-448 12-218 (226)
174 CHL00081 chlI Mg-protoporyphyr 99.3 1.2E-11 2.6E-16 121.3 13.5 163 201-384 11-232 (350)
175 PRK14971 DNA polymerase III su 99.3 4.8E-11 1E-15 126.4 19.0 182 203-416 13-224 (614)
176 TIGR02030 BchI-ChlI magnesium 99.3 3.3E-11 7.1E-16 118.3 14.2 158 205-383 2-218 (337)
177 PHA02244 ATPase-like protein 99.3 5.6E-10 1.2E-14 109.0 22.0 120 234-370 119-261 (383)
178 KOG1969|consensus 99.3 1.2E-10 2.5E-15 119.9 17.6 202 198-425 262-518 (877)
179 PRK09112 DNA polymerase III su 99.3 2E-10 4.3E-15 113.8 18.9 158 202-383 18-212 (351)
180 TIGR01650 PD_CobS cobaltochela 99.3 6.6E-11 1.4E-15 114.3 14.8 138 234-385 64-234 (327)
181 TIGR02442 Cob-chelat-sub cobal 99.3 3.3E-11 7.2E-16 128.9 14.1 156 205-384 2-214 (633)
182 KOG1051|consensus 99.3 6.4E-11 1.4E-15 126.9 14.9 125 208-347 563-710 (898)
183 PRK05564 DNA polymerase III su 99.3 1.9E-10 4.1E-15 113.2 17.2 152 205-384 2-165 (313)
184 COG0542 clpA ATP-binding subun 99.2 1.9E-10 4E-15 121.8 16.2 173 204-394 167-356 (786)
185 COG0714 MoxR-like ATPases [Gen 99.2 1.9E-10 4E-15 114.1 13.9 148 209-383 26-202 (329)
186 PRK07471 DNA polymerase III su 99.2 2.7E-10 5.9E-15 113.4 14.5 158 202-383 14-212 (365)
187 TIGR00678 holB DNA polymerase 99.2 4.2E-10 9.1E-15 102.4 14.4 141 233-402 13-181 (188)
188 PRK11331 5-methylcytosine-spec 99.2 8E-10 1.7E-14 110.8 17.0 140 206-368 174-356 (459)
189 COG1224 TIP49 DNA helicase TIP 99.2 2.6E-09 5.7E-14 101.7 19.4 69 201-270 33-103 (450)
190 TIGR00764 lon_rel lon-related 99.2 4E-10 8.7E-15 119.5 15.3 56 198-261 9-64 (608)
191 COG1219 ClpX ATP-dependent pro 99.2 4.3E-10 9.2E-15 105.5 13.5 124 208-333 62-203 (408)
192 COG3829 RocR Transcriptional r 99.2 3.9E-11 8.4E-16 120.6 7.1 157 201-380 239-427 (560)
193 PF07728 AAA_5: AAA domain (dy 99.2 6.4E-11 1.4E-15 102.2 7.3 110 236-361 1-139 (139)
194 COG3604 FhlA Transcriptional r 99.2 4.2E-10 9E-15 111.8 13.7 196 201-422 217-456 (550)
195 COG0470 HolB ATPase involved i 99.2 5E-10 1.1E-14 110.9 14.3 144 208-376 2-173 (325)
196 CHL00181 cbbX CbbX; Provisiona 99.1 1.2E-09 2.5E-14 105.7 15.8 133 17-168 100-257 (287)
197 KOG0991|consensus 99.1 3.1E-10 6.7E-15 101.8 10.7 161 200-388 20-189 (333)
198 PF05621 TniB: Bacterial TniB 99.1 2.6E-09 5.7E-14 101.4 17.4 215 210-448 37-285 (302)
199 PF07724 AAA_2: AAA domain (Cd 99.1 1.9E-10 4.2E-15 102.3 9.1 111 234-348 3-130 (171)
200 COG2204 AtoC Response regulato 99.1 8.1E-10 1.8E-14 111.2 14.4 195 204-421 138-373 (464)
201 PRK07399 DNA polymerase III su 99.1 1E-09 2.3E-14 107.2 14.8 155 205-384 2-195 (314)
202 smart00382 AAA ATPases associa 99.1 5.3E-10 1.1E-14 95.7 11.1 125 234-369 2-146 (148)
203 PRK08058 DNA polymerase III su 99.1 6.7E-10 1.4E-14 109.8 13.2 148 205-381 3-179 (329)
204 PRK05707 DNA polymerase III su 99.1 9.7E-10 2.1E-14 108.0 13.9 131 231-383 19-177 (328)
205 PF01078 Mg_chelatase: Magnesi 99.1 1.7E-10 3.7E-15 104.0 6.8 46 205-258 1-46 (206)
206 PRK11608 pspF phage shock prot 99.1 1.7E-09 3.7E-14 106.7 14.3 191 206-420 5-238 (326)
207 smart00763 AAA_PrkA PrkA AAA d 99.1 4.3E-09 9.4E-14 102.9 16.2 62 206-267 49-118 (361)
208 TIGR02974 phageshock_pspF psp 99.1 2.1E-09 4.5E-14 106.0 14.1 149 209-380 1-180 (329)
209 PRK10820 DNA-binding transcrip 99.1 2.3E-09 5E-14 112.4 15.2 155 202-379 199-384 (520)
210 PRK15429 formate hydrogenlyase 99.1 7.2E-09 1.6E-13 112.7 19.4 193 204-422 373-609 (686)
211 smart00350 MCM minichromosome 99.1 2.3E-09 5E-14 112.1 14.8 160 208-385 204-401 (509)
212 TIGR03015 pepcterm_ATPase puta 99.1 1.6E-08 3.5E-13 97.4 19.5 187 234-448 43-262 (269)
213 PRK05022 anaerobic nitric oxid 99.0 2.1E-09 4.5E-14 112.7 14.0 196 205-423 185-421 (509)
214 TIGR01817 nifA Nif-specific re 99.0 6.1E-09 1.3E-13 110.1 17.3 128 201-348 190-341 (534)
215 PRK13531 regulatory ATPase Rav 99.0 2.3E-09 4.9E-14 108.4 12.9 152 208-382 21-192 (498)
216 TIGR02031 BchD-ChlD magnesium 99.0 2.8E-09 6.2E-14 112.9 14.0 133 234-384 16-174 (589)
217 PF07726 AAA_3: ATPase family 99.0 8E-11 1.7E-15 97.3 1.7 111 236-361 1-129 (131)
218 PRK04132 replication factor C 99.0 6.3E-09 1.4E-13 112.6 16.5 142 236-402 566-721 (846)
219 KOG1514|consensus 99.0 1.5E-08 3.2E-13 104.5 17.8 204 234-461 422-658 (767)
220 PF06068 TIP49: TIP49 C-termin 99.0 1.2E-08 2.6E-13 98.8 16.1 68 202-270 19-88 (398)
221 COG1221 PspF Transcriptional r 99.0 1.6E-09 3.6E-14 107.2 10.3 200 201-424 72-311 (403)
222 PRK15424 propionate catabolism 99.0 2.9E-09 6.3E-14 110.7 12.7 160 204-386 216-418 (538)
223 PF00158 Sigma54_activat: Sigm 99.0 8.7E-10 1.9E-14 97.8 7.6 120 209-348 1-144 (168)
224 KOG0742|consensus 99.0 1.5E-09 3.3E-14 104.8 9.8 116 31-160 430-587 (630)
225 KOG2227|consensus 99.0 2.5E-08 5.5E-13 98.4 18.3 232 207-461 150-418 (529)
226 TIGR02329 propionate_PrpR prop 99.0 2.2E-09 4.8E-14 111.7 11.6 161 203-386 208-403 (526)
227 TIGR02880 cbbX_cfxQ probable R 99.0 9.5E-09 2.1E-13 99.4 15.0 130 18-168 100-256 (284)
228 PF13177 DNA_pol3_delta2: DNA 99.0 3.4E-09 7.4E-14 93.7 10.9 132 211-368 1-159 (162)
229 TIGR00368 Mg chelatase-related 99.0 1.2E-08 2.7E-13 105.4 16.5 140 204-369 189-390 (499)
230 PRK06964 DNA polymerase III su 99.0 7.3E-09 1.6E-13 101.8 13.9 133 231-382 18-202 (342)
231 TIGR00602 rad24 checkpoint pro 99.0 1.2E-08 2.6E-13 107.7 15.7 226 199-448 76-351 (637)
232 PRK11388 DNA-binding transcrip 99.0 1.8E-08 3.9E-13 108.9 17.1 126 203-348 321-467 (638)
233 COG1220 HslU ATP-dependent pro 98.9 1.2E-08 2.6E-13 96.6 13.2 60 208-267 16-83 (444)
234 PRK06871 DNA polymerase III su 98.9 1.5E-08 3.2E-13 99.0 14.0 129 231-382 21-177 (325)
235 KOG0744|consensus 98.9 4E-09 8.6E-14 99.2 9.1 153 17-188 220-414 (423)
236 TIGR02881 spore_V_K stage V sp 98.9 1.6E-08 3.4E-13 97.0 13.5 128 19-167 85-240 (261)
237 PRK12377 putative replication 98.9 1.3E-08 2.8E-13 95.8 12.1 131 200-348 67-206 (248)
238 PRK08116 hypothetical protein; 98.9 1.2E-08 2.7E-13 97.6 11.3 110 234-357 114-235 (268)
239 PRK07952 DNA replication prote 98.9 3.6E-08 7.7E-13 92.6 14.0 133 201-348 66-205 (244)
240 PRK07993 DNA polymerase III su 98.9 1.6E-08 3.5E-13 99.6 12.1 129 231-381 21-177 (334)
241 KOG0745|consensus 98.9 1E-08 2.2E-13 100.0 10.2 98 234-333 226-332 (564)
242 PRK06090 DNA polymerase III su 98.9 4.7E-08 1E-12 95.2 14.2 144 212-382 8-178 (319)
243 PRK08769 DNA polymerase III su 98.8 3.6E-08 7.8E-13 96.1 13.1 146 212-381 9-182 (319)
244 PRK08181 transposase; Validate 98.8 3.2E-08 6.8E-13 94.3 11.4 100 234-348 106-209 (269)
245 PRK13765 ATP-dependent proteas 98.8 6.5E-08 1.4E-12 102.5 13.2 54 198-259 22-75 (637)
246 COG1239 ChlI Mg-chelatase subu 98.8 6.6E-08 1.4E-12 95.0 11.9 163 203-386 13-234 (423)
247 PRK09862 putative ATP-dependen 98.8 1.5E-07 3.3E-12 97.0 14.9 141 204-370 188-388 (506)
248 PRK08939 primosomal protein Dn 98.8 5.9E-08 1.3E-12 94.5 11.3 101 233-348 155-261 (306)
249 PRK06526 transposase; Provisio 98.7 6.5E-08 1.4E-12 91.7 10.8 100 234-348 98-201 (254)
250 PRK08699 DNA polymerase III su 98.7 1.1E-07 2.3E-12 93.5 12.1 131 231-381 18-182 (325)
251 COG1484 DnaC DNA replication p 98.7 2.1E-07 4.5E-12 88.4 13.3 71 234-306 105-180 (254)
252 PRK06921 hypothetical protein; 98.7 2.7E-07 5.9E-12 88.2 14.2 68 234-304 117-188 (266)
253 PF14532 Sigma54_activ_2: Sigm 98.7 3.2E-08 6.9E-13 85.2 6.8 106 211-348 2-110 (138)
254 PRK06835 DNA replication prote 98.7 1.4E-07 2.9E-12 92.7 11.0 71 234-306 183-259 (329)
255 PRK09183 transposase/IS protei 98.7 1.1E-07 2.3E-12 90.7 9.6 72 234-306 102-177 (259)
256 TIGR02915 PEP_resp_reg putativ 98.7 1.6E-07 3.6E-12 97.2 11.8 188 207-420 139-370 (445)
257 KOG1942|consensus 98.7 2.1E-06 4.6E-11 80.0 17.5 58 201-259 32-89 (456)
258 PTZ00111 DNA replication licen 98.6 1.6E-07 3.5E-12 101.4 11.0 159 208-384 451-657 (915)
259 PF13173 AAA_14: AAA domain 98.6 2.8E-07 6.2E-12 78.1 10.3 70 235-306 3-74 (128)
260 PRK10923 glnG nitrogen regulat 98.6 7.7E-07 1.7E-11 92.8 15.1 156 206-384 137-326 (469)
261 PF01695 IstB_IS21: IstB-like 98.6 7.2E-08 1.6E-12 86.5 5.8 100 234-348 47-150 (178)
262 KOG0990|consensus 98.6 1.9E-07 4.1E-12 88.1 8.5 160 198-385 32-204 (360)
263 KOG2035|consensus 98.6 9.9E-07 2.2E-11 81.7 12.9 172 201-402 7-218 (351)
264 PF13401 AAA_22: AAA domain; P 98.6 3.4E-07 7.5E-12 77.7 9.3 86 234-331 4-113 (131)
265 PF01637 Arch_ATPase: Archaeal 98.6 2.5E-07 5.5E-12 86.6 9.1 178 210-407 2-228 (234)
266 COG0606 Predicted ATPase with 98.6 3E-07 6.5E-12 91.8 9.7 77 174-258 140-222 (490)
267 PRK11361 acetoacetate metaboli 98.6 1.3E-06 2.8E-11 90.9 15.1 151 207-380 143-324 (457)
268 KOG2680|consensus 98.5 4.5E-06 9.7E-11 78.2 16.4 69 201-270 34-104 (454)
269 PF03215 Rad17: Rad17 cell cyc 98.5 3E-06 6.5E-11 88.1 16.9 207 198-423 10-269 (519)
270 PF00004 AAA: ATPase family as 98.5 2.4E-07 5.2E-12 78.6 5.9 76 24-111 38-132 (132)
271 PRK15115 response regulator Gl 98.5 7.2E-06 1.6E-10 84.9 17.7 149 208-379 135-314 (444)
272 PRK05917 DNA polymerase III su 98.4 1.5E-06 3.3E-11 83.2 11.2 117 231-368 16-152 (290)
273 KOG2228|consensus 98.4 2.3E-06 5.1E-11 81.4 11.6 164 206-384 23-219 (408)
274 TIGR01818 ntrC nitrogen regula 98.4 3.5E-06 7.6E-11 87.8 13.3 195 207-421 134-366 (463)
275 KOG1970|consensus 98.4 2.3E-05 4.9E-10 79.4 17.7 68 199-266 74-142 (634)
276 PRK13406 bchD magnesium chelat 98.3 3.5E-06 7.6E-11 88.8 11.5 189 235-452 26-250 (584)
277 PRK10365 transcriptional regul 98.3 8.1E-06 1.7E-10 84.5 14.0 148 209-379 141-319 (441)
278 PF12775 AAA_7: P-loop contain 98.3 2.6E-06 5.7E-11 81.7 9.3 138 234-386 33-195 (272)
279 PRK00149 dnaA chromosomal repl 98.3 3.3E-05 7.1E-10 80.0 17.6 205 44-289 211-427 (450)
280 PRK14086 dnaA chromosomal repl 98.3 6.5E-05 1.4E-09 78.9 19.0 206 43-289 376-593 (617)
281 PRK05818 DNA polymerase III su 98.3 8.6E-06 1.9E-10 76.4 11.3 113 234-369 7-146 (261)
282 COG1241 MCM2 Predicted ATPase 98.3 7E-07 1.5E-11 94.2 4.3 160 207-384 286-483 (682)
283 PRK07276 DNA polymerase III su 98.3 1.3E-05 2.9E-10 77.0 12.7 129 231-381 21-172 (290)
284 COG3283 TyrR Transcriptional r 98.2 1.6E-05 3.4E-10 76.4 12.5 128 201-348 198-344 (511)
285 PF03969 AFG1_ATPase: AFG1-lik 98.2 3.5E-06 7.5E-11 83.9 8.1 100 233-348 61-168 (362)
286 PRK07132 DNA polymerase III su 98.2 3.5E-05 7.6E-10 74.7 14.7 124 234-381 18-159 (299)
287 PRK00411 cdc6 cell division co 98.2 4.4E-05 9.5E-10 77.8 15.9 131 43-189 137-283 (394)
288 cd01120 RecA-like_NTPases RecA 98.2 7.6E-06 1.7E-10 71.9 9.0 109 237-349 2-138 (165)
289 PF12774 AAA_6: Hydrolytic ATP 98.2 1.7E-05 3.7E-10 74.0 11.5 65 235-306 33-97 (231)
290 TIGR00362 DnaA chromosomal rep 98.2 5.9E-05 1.3E-09 77.1 16.4 127 44-188 199-337 (405)
291 TIGR02928 orc1/cdc6 family rep 98.2 8.1E-05 1.8E-09 75.0 16.9 143 31-189 116-275 (365)
292 COG5271 MDN1 AAA ATPase contai 98.2 0.00027 5.9E-09 79.5 21.3 133 236-383 890-1046(4600)
293 COG5271 MDN1 AAA ATPase contai 98.2 0.00013 2.7E-09 82.0 18.6 130 234-381 1543-1700(4600)
294 PF05729 NACHT: NACHT domain 98.1 2.7E-05 5.8E-10 68.7 11.5 140 236-386 2-165 (166)
295 PF00493 MCM: MCM2/3/5 family 98.1 1.2E-06 2.7E-11 86.6 2.8 160 208-386 25-223 (331)
296 PRK14088 dnaA chromosomal repl 98.1 0.00017 3.6E-09 74.3 18.4 206 44-289 194-411 (440)
297 KOG2170|consensus 98.1 3E-05 6.6E-10 72.9 11.1 125 208-348 83-225 (344)
298 COG1618 Predicted nucleotide k 98.1 2.8E-05 6E-10 66.6 9.7 25 234-258 5-29 (179)
299 PF00931 NB-ARC: NB-ARC domain 98.1 0.00014 2.9E-09 70.6 15.9 147 234-402 19-192 (287)
300 PF00910 RNA_helicase: RNA hel 98.0 2.6E-05 5.7E-10 63.8 8.2 23 237-259 1-23 (107)
301 PHA00729 NTP-binding motif con 98.0 1.8E-05 3.9E-10 72.9 7.7 25 235-259 18-42 (226)
302 TIGR02237 recomb_radB DNA repa 98.0 2.8E-05 6.1E-10 71.8 9.0 77 231-307 8-111 (209)
303 PLN03210 Resistant to P. syrin 98.0 8.9E-05 1.9E-09 85.6 15.0 55 202-260 179-233 (1153)
304 TIGR00763 lon ATP-dependent pr 98.0 5.9E-05 1.3E-09 83.2 12.4 132 31-166 403-555 (775)
305 PRK15455 PrkA family serine pr 97.9 1.4E-05 3.1E-10 82.3 6.1 62 205-266 74-136 (644)
306 PRK00080 ruvB Holliday junctio 97.9 0.00015 3.3E-09 71.8 13.3 136 44-188 102-250 (328)
307 PRK12422 chromosomal replicati 97.9 0.00061 1.3E-08 70.1 17.8 132 43-189 201-344 (445)
308 COG3284 AcoR Transcriptional a 97.9 1.9E-05 4.1E-10 81.5 6.7 188 210-420 316-538 (606)
309 PF06309 Torsin: Torsin; Inte 97.9 2.8E-05 6.1E-10 64.4 6.2 52 207-258 25-77 (127)
310 PTZ00112 origin recognition co 97.9 0.00015 3.2E-09 78.1 12.9 139 30-189 854-1007(1164)
311 TIGR02012 tigrfam_recA protein 97.9 0.0001 2.2E-09 71.9 10.9 116 231-346 51-190 (321)
312 PRK14087 dnaA chromosomal repl 97.9 0.0011 2.4E-08 68.4 19.0 210 43-289 205-426 (450)
313 KOG0478|consensus 97.9 4.8E-05 1E-09 78.7 8.7 152 208-374 430-616 (804)
314 PF13207 AAA_17: AAA domain; P 97.9 1.5E-05 3.2E-10 66.7 4.0 30 237-266 2-31 (121)
315 TIGR00635 ruvB Holliday juncti 97.9 0.00025 5.4E-09 69.6 13.3 136 43-187 80-228 (305)
316 cd01124 KaiC KaiC is a circadi 97.8 0.00016 3.4E-09 65.4 10.9 31 237-267 2-35 (187)
317 PRK08118 topology modulation p 97.8 4E-05 8.7E-10 68.1 6.7 32 236-267 3-34 (167)
318 PRK09361 radB DNA repair and r 97.8 9.7E-05 2.1E-09 69.1 9.5 38 231-268 19-60 (225)
319 COG1116 TauB ABC-type nitrate/ 97.8 4.4E-05 9.5E-10 70.5 6.8 23 236-258 31-53 (248)
320 cd00983 recA RecA is a bacter 97.8 0.00015 3.3E-09 70.8 10.6 116 231-346 51-190 (325)
321 KOG0482|consensus 97.8 7.8E-05 1.7E-09 74.6 8.4 162 208-384 343-539 (721)
322 PRK07261 topology modulation p 97.8 4.9E-05 1.1E-09 67.8 6.4 32 236-267 2-33 (171)
323 PF13604 AAA_30: AAA domain; P 97.8 7.9E-05 1.7E-09 68.0 7.8 98 235-347 19-132 (196)
324 PRK06893 DNA replication initi 97.7 0.00043 9.3E-09 64.9 12.5 124 44-185 91-227 (229)
325 COG1373 Predicted ATPase (AAA+ 97.7 0.0003 6.5E-09 71.4 11.9 69 236-306 39-107 (398)
326 KOG1968|consensus 97.7 7.8E-05 1.7E-09 81.5 8.0 161 237-420 360-534 (871)
327 PRK11823 DNA repair protein Ra 97.7 0.00027 5.9E-09 72.8 11.5 77 231-307 76-170 (446)
328 COG1485 Predicted ATPase [Gene 97.7 0.00015 3.2E-09 70.1 8.4 100 233-348 64-171 (367)
329 TIGR01618 phage_P_loop phage n 97.7 6.1E-05 1.3E-09 69.5 5.6 72 234-307 12-95 (220)
330 cd01121 Sms Sms (bacterial rad 97.7 0.00016 3.5E-09 72.4 8.9 74 234-307 82-172 (372)
331 KOG2383|consensus 97.7 0.0003 6.5E-09 68.8 10.3 159 234-419 114-297 (467)
332 COG3267 ExeA Type II secretory 97.7 0.0061 1.3E-07 56.6 18.3 172 236-424 53-255 (269)
333 PRK04296 thymidine kinase; Pro 97.7 0.00035 7.6E-09 63.4 10.1 70 236-306 4-91 (190)
334 PRK08533 flagellar accessory p 97.7 0.00046 1E-08 64.7 11.1 73 234-306 24-130 (230)
335 TIGR02688 conserved hypothetic 97.7 0.0015 3.2E-08 65.5 15.0 81 234-332 209-290 (449)
336 TIGR02902 spore_lonB ATP-depen 97.6 0.00048 1E-08 72.6 12.1 134 43-187 174-331 (531)
337 COG4650 RtcR Sigma54-dependent 97.6 0.00033 7.1E-09 65.7 9.5 50 106-159 76-126 (531)
338 cd01394 radB RadB. The archaea 97.6 0.00027 5.8E-09 65.7 9.2 37 231-267 15-55 (218)
339 PF13671 AAA_33: AAA domain; P 97.6 0.00021 4.5E-09 61.5 7.8 35 237-273 2-36 (143)
340 PF13191 AAA_16: AAA ATPase do 97.6 5.6E-05 1.2E-09 68.0 4.4 59 209-270 2-63 (185)
341 KOG0480|consensus 97.6 0.0011 2.4E-08 68.4 13.7 161 206-384 344-542 (764)
342 PRK09354 recA recombinase A; P 97.6 0.00033 7.1E-09 69.0 9.6 78 231-308 56-153 (349)
343 PRK13342 recombination factor 97.6 0.0012 2.6E-08 67.6 14.1 130 31-188 76-219 (413)
344 PRK12723 flagellar biosynthesi 97.6 0.0016 3.4E-08 65.5 14.4 123 234-369 174-322 (388)
345 KOG3347|consensus 97.6 0.00016 3.4E-09 61.1 6.0 33 234-266 7-39 (176)
346 PRK00771 signal recognition pa 97.6 0.0022 4.7E-08 65.6 15.4 72 233-306 94-188 (437)
347 PF01745 IPT: Isopentenyl tran 97.6 0.00014 2.9E-09 65.6 5.8 151 236-402 3-160 (233)
348 COG2256 MGS1 ATPase related to 97.6 0.0016 3.5E-08 64.1 13.5 134 30-188 87-238 (436)
349 TIGR02858 spore_III_AA stage I 97.6 0.00028 6.1E-09 67.4 8.4 94 235-348 112-229 (270)
350 PRK10536 hypothetical protein; 97.6 0.0011 2.4E-08 62.2 12.0 48 202-257 50-97 (262)
351 PRK06762 hypothetical protein; 97.6 0.00036 7.8E-09 61.8 8.5 39 234-272 2-40 (166)
352 KOG1051|consensus 97.6 0.00074 1.6E-08 73.5 12.3 162 206-386 185-365 (898)
353 PRK00131 aroK shikimate kinase 97.6 8.6E-05 1.9E-09 66.2 4.5 33 234-266 4-36 (175)
354 KOG2543|consensus 97.5 0.0022 4.7E-08 62.7 14.0 158 208-382 7-191 (438)
355 PF03266 NTPase_1: NTPase; In 97.5 6.7E-05 1.5E-09 66.5 3.6 23 236-258 1-23 (168)
356 COG1474 CDC6 Cdc6-related prot 97.5 0.0012 2.7E-08 65.9 13.0 158 14-189 88-266 (366)
357 PF08298 AAA_PrkA: PrkA AAA do 97.5 0.00028 6.1E-09 68.8 8.1 60 207-266 61-121 (358)
358 PF05707 Zot: Zonular occluden 97.5 0.00025 5.5E-09 64.6 7.4 122 237-369 3-145 (193)
359 PF00437 T2SE: Type II/IV secr 97.5 0.0002 4.3E-09 68.9 7.0 99 202-304 99-208 (270)
360 PRK06067 flagellar accessory p 97.5 0.00072 1.6E-08 63.6 10.7 37 231-267 21-61 (234)
361 PHA02624 large T antigen; Prov 97.5 0.00026 5.6E-09 73.6 8.0 122 231-369 427-561 (647)
362 PRK14974 cell division protein 97.5 0.0017 3.7E-08 64.0 13.4 73 234-306 140-235 (336)
363 COG3854 SpoIIIAA ncharacterize 97.5 0.0003 6.6E-09 63.9 7.4 71 235-305 138-230 (308)
364 cd03283 ABC_MutS-like MutS-lik 97.5 0.00075 1.6E-08 61.7 10.2 69 235-303 26-115 (199)
365 cd01131 PilT Pilus retraction 97.5 0.00017 3.8E-09 65.9 6.0 67 236-302 3-83 (198)
366 PRK08727 hypothetical protein; 97.5 0.002 4.3E-08 60.5 13.2 125 44-186 93-229 (233)
367 COG4619 ABC-type uncharacteriz 97.5 0.00065 1.4E-08 58.8 8.8 25 234-258 29-53 (223)
368 cd01129 PulE-GspE PulE/GspE Th 97.5 0.00034 7.4E-09 66.9 8.0 93 204-303 57-159 (264)
369 KOG0477|consensus 97.5 9.2E-05 2E-09 75.8 4.0 152 208-369 450-631 (854)
370 PRK11889 flhF flagellar biosyn 97.5 0.0023 5E-08 63.7 13.5 72 234-305 241-332 (436)
371 cd01393 recA_like RecA is a b 97.5 0.00053 1.1E-08 64.1 8.9 115 231-345 15-166 (226)
372 PRK13947 shikimate kinase; Pro 97.5 0.00012 2.6E-09 65.2 4.2 31 236-266 3-33 (171)
373 PRK03839 putative kinase; Prov 97.4 0.00012 2.7E-09 65.8 4.0 31 236-266 2-32 (180)
374 PRK00625 shikimate kinase; Pro 97.4 0.00014 3E-09 64.9 4.2 31 236-266 2-32 (173)
375 PF00308 Bac_DnaA: Bacterial d 97.4 0.0025 5.5E-08 59.2 12.5 105 44-162 97-213 (219)
376 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.00053 1.2E-08 64.5 8.2 116 231-346 15-168 (235)
377 TIGR02238 recomb_DMC1 meiotic 97.4 0.0022 4.8E-08 62.8 12.6 38 231-268 92-139 (313)
378 PRK13695 putative NTPase; Prov 97.4 0.0017 3.6E-08 58.1 10.7 23 236-258 2-24 (174)
379 PF14516 AAA_35: AAA-like doma 97.4 0.0094 2E-07 59.1 17.1 162 234-407 31-233 (331)
380 TIGR01425 SRP54_euk signal rec 97.4 0.011 2.5E-07 59.9 17.7 72 234-305 100-194 (429)
381 cd01128 rho_factor Transcripti 97.4 0.0023 5E-08 60.5 12.0 27 234-260 16-42 (249)
382 cd00464 SK Shikimate kinase (S 97.4 0.00017 3.7E-09 62.9 4.2 31 236-266 1-31 (154)
383 PRK06581 DNA polymerase III su 97.4 0.0029 6.3E-08 58.5 12.1 133 234-385 15-162 (263)
384 cd00046 DEXDc DEAD-like helica 97.4 0.0013 2.7E-08 55.5 9.4 23 236-258 2-24 (144)
385 COG1066 Sms Predicted ATP-depe 97.4 0.0013 2.8E-08 64.9 10.3 151 234-389 93-261 (456)
386 PRK10787 DNA-binding ATP-depen 97.4 0.001 2.3E-08 73.0 10.8 145 39-186 412-580 (784)
387 TIGR02525 plasmid_TraJ plasmid 97.4 0.00062 1.4E-08 68.0 8.1 69 235-303 150-235 (372)
388 cd03216 ABC_Carb_Monos_I This 97.3 0.00066 1.4E-08 60.0 7.4 70 234-303 26-110 (163)
389 PRK13949 shikimate kinase; Pro 97.3 0.00019 4.2E-09 63.8 3.9 31 236-266 3-33 (169)
390 cd00544 CobU Adenosylcobinamid 97.3 0.0012 2.6E-08 58.6 8.8 70 237-308 2-88 (169)
391 PF06745 KaiC: KaiC; InterPro 97.3 0.0015 3.3E-08 61.1 9.9 107 231-346 15-159 (226)
392 PF00448 SRP54: SRP54-type pro 97.3 0.0011 2.4E-08 60.4 8.7 70 234-303 1-93 (196)
393 TIGR01448 recD_rel helicase, p 97.3 0.0016 3.5E-08 71.2 11.4 100 235-350 339-457 (720)
394 cd03222 ABC_RNaseL_inhibitor T 97.3 0.00057 1.2E-08 61.2 6.6 70 234-303 25-99 (177)
395 PRK14532 adenylate kinase; Pro 97.3 0.00022 4.8E-09 64.6 4.0 36 236-273 2-37 (188)
396 PF04665 Pox_A32: Poxvirus A32 97.3 0.0036 7.9E-08 58.4 12.1 129 234-382 13-168 (241)
397 PRK13948 shikimate kinase; Pro 97.3 0.00056 1.2E-08 61.5 6.4 33 234-266 10-42 (182)
398 PRK06217 hypothetical protein; 97.3 0.00024 5.3E-09 64.1 4.1 31 236-266 3-33 (183)
399 PRK06696 uridine kinase; Valid 97.3 0.00063 1.4E-08 63.5 7.0 37 234-270 22-61 (223)
400 TIGR02782 TrbB_P P-type conjug 97.3 0.00032 6.9E-09 68.4 5.1 70 234-303 132-214 (299)
401 COG1102 Cmk Cytidylate kinase 97.3 0.00024 5.1E-09 61.0 3.6 28 237-264 3-30 (179)
402 COG0703 AroK Shikimate kinase 97.3 0.00035 7.5E-09 61.4 4.8 40 235-276 3-42 (172)
403 PRK08154 anaerobic benzoate ca 97.3 0.0036 7.7E-08 61.5 12.5 33 234-266 133-165 (309)
404 PRK14722 flhF flagellar biosyn 97.3 0.00083 1.8E-08 67.0 8.0 108 234-355 137-266 (374)
405 TIGR03015 pepcterm_ATPase puta 97.3 0.019 4E-07 55.1 17.3 133 41-189 120-267 (269)
406 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00025 5.3E-09 64.0 3.9 35 237-273 2-36 (183)
407 KOG0743|consensus 97.3 0.0013 2.9E-08 65.6 9.3 101 44-158 286-413 (457)
408 TIGR00416 sms DNA repair prote 97.3 0.0016 3.5E-08 67.1 10.3 77 231-307 90-184 (454)
409 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.002 4.4E-08 60.7 10.3 37 231-267 17-57 (237)
410 KOG2028|consensus 97.3 0.0042 9.1E-08 60.3 12.1 140 30-188 204-368 (554)
411 PRK14531 adenylate kinase; Pro 97.3 0.00031 6.7E-09 63.4 4.4 34 236-271 4-37 (183)
412 cd01130 VirB11-like_ATPase Typ 97.2 0.00039 8.4E-09 63.0 4.9 69 234-302 25-109 (186)
413 cd00227 CPT Chloramphenicol (C 97.2 0.00031 6.6E-09 62.9 4.1 36 235-270 3-38 (175)
414 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.0016 3.5E-08 56.3 8.5 69 234-304 26-99 (144)
415 TIGR01420 pilT_fam pilus retra 97.2 0.00051 1.1E-08 68.4 6.0 70 234-303 122-205 (343)
416 PRK09376 rho transcription ter 97.2 0.0026 5.5E-08 63.3 10.7 26 234-259 169-194 (416)
417 TIGR03574 selen_PSTK L-seryl-t 97.2 0.0025 5.4E-08 60.5 10.5 34 237-270 2-38 (249)
418 PF05272 VirE: Virulence-assoc 97.2 0.0016 3.5E-08 59.3 8.7 111 229-368 46-168 (198)
419 COG2874 FlaH Predicted ATPases 97.2 0.0021 4.5E-08 58.0 9.0 116 231-357 24-176 (235)
420 COG1126 GlnQ ABC-type polar am 97.2 0.0017 3.8E-08 58.7 8.5 50 283-344 144-193 (240)
421 cd03238 ABC_UvrA The excision 97.2 0.0024 5.2E-08 57.1 9.5 23 234-256 21-43 (176)
422 COG2804 PulE Type II secretory 97.2 0.00073 1.6E-08 68.7 6.6 91 204-304 235-338 (500)
423 PRK08084 DNA replication initi 97.2 0.007 1.5E-07 56.9 12.9 123 45-185 98-233 (235)
424 PRK13900 type IV secretion sys 97.2 0.001 2.2E-08 65.7 7.5 70 234-303 160-245 (332)
425 cd02021 GntK Gluconate kinase 97.2 0.00035 7.6E-09 60.7 3.8 28 237-264 2-29 (150)
426 PTZ00202 tuzin; Provisional 97.2 0.026 5.5E-07 57.0 17.0 62 204-268 259-320 (550)
427 cd02020 CMPK Cytidine monophos 97.2 0.00038 8.2E-09 60.1 3.9 30 237-266 2-31 (147)
428 PRK14530 adenylate kinase; Pro 97.2 0.00042 9.2E-09 64.3 4.4 30 236-265 5-34 (215)
429 TIGR01313 therm_gnt_kin carboh 97.2 0.00035 7.6E-09 61.7 3.6 27 237-263 1-27 (163)
430 PRK13764 ATPase; Provisional 97.2 0.00081 1.8E-08 71.0 6.7 70 234-304 257-335 (602)
431 cd02027 APSK Adenosine 5'-phos 97.1 0.0021 4.5E-08 55.9 8.3 35 237-271 2-39 (149)
432 TIGR02533 type_II_gspE general 97.1 0.0011 2.4E-08 68.9 7.6 94 204-304 219-322 (486)
433 PRK14962 DNA polymerase III su 97.1 0.0079 1.7E-07 62.3 13.8 130 31-187 101-241 (472)
434 PRK06547 hypothetical protein; 97.1 0.00052 1.1E-08 61.2 4.4 33 234-266 15-47 (172)
435 cd01428 ADK Adenylate kinase ( 97.1 0.00041 8.9E-09 63.1 3.9 35 237-273 2-36 (194)
436 PRK14961 DNA polymerase III su 97.1 0.011 2.4E-07 59.4 14.5 130 30-186 102-242 (363)
437 PTZ00088 adenylate kinase 1; P 97.1 0.00047 1E-08 64.4 4.2 37 234-272 6-42 (229)
438 TIGR02397 dnaX_nterm DNA polym 97.1 0.0093 2E-07 59.8 13.9 129 31-186 101-240 (355)
439 cd03281 ABC_MSH5_euk MutS5 hom 97.1 0.0054 1.2E-07 56.7 11.2 22 235-256 30-51 (213)
440 PRK05800 cobU adenosylcobinami 97.1 0.003 6.5E-08 56.2 9.1 33 236-268 3-35 (170)
441 PRK10867 signal recognition pa 97.1 0.039 8.4E-07 56.4 18.2 72 234-305 100-195 (433)
442 PRK13833 conjugal transfer pro 97.1 0.00067 1.5E-08 66.4 5.4 69 234-302 144-224 (323)
443 PF13245 AAA_19: Part of AAA d 97.1 0.00092 2E-08 50.8 4.9 31 237-267 13-50 (76)
444 PRK03731 aroL shikimate kinase 97.1 0.00057 1.2E-08 60.9 4.4 31 236-266 4-34 (171)
445 PRK05057 aroK shikimate kinase 97.1 0.00055 1.2E-08 61.1 4.2 34 234-267 4-37 (172)
446 PRK13946 shikimate kinase; Pro 97.1 0.00048 1E-08 62.2 3.8 33 234-266 10-42 (184)
447 cd00984 DnaB_C DnaB helicase C 97.1 0.0038 8.2E-08 58.9 10.1 37 231-267 9-50 (242)
448 COG3842 PotA ABC-type spermidi 97.1 0.00052 1.1E-08 67.5 4.3 21 237-257 34-54 (352)
449 COG3839 MalK ABC-type sugar tr 97.1 0.0007 1.5E-08 66.3 5.0 23 236-258 31-53 (338)
450 PRK09519 recA DNA recombinatio 97.1 0.0036 7.8E-08 67.9 10.7 115 231-345 56-194 (790)
451 PRK14528 adenylate kinase; Pro 97.1 0.00059 1.3E-08 61.7 4.2 34 236-271 3-36 (186)
452 PRK10436 hypothetical protein; 97.0 0.0022 4.7E-08 66.1 8.5 93 204-303 195-297 (462)
453 PRK04841 transcriptional regul 97.0 0.0083 1.8E-07 68.0 14.2 33 234-267 32-64 (903)
454 PRK13894 conjugal transfer ATP 97.0 0.0009 1.9E-08 65.7 5.5 70 234-303 148-229 (319)
455 TIGR03878 thermo_KaiC_2 KaiC d 97.0 0.0047 1E-07 59.0 10.3 37 231-267 32-72 (259)
456 COG0563 Adk Adenylate kinase a 97.0 0.00086 1.9E-08 60.0 4.9 34 236-271 2-35 (178)
457 PRK09087 hypothetical protein; 97.0 0.0081 1.8E-07 56.1 11.7 122 46-188 89-222 (226)
458 PLN03187 meiotic recombination 97.0 0.0032 6.9E-08 62.3 9.2 37 231-267 122-168 (344)
459 PRK06645 DNA polymerase III su 97.0 0.012 2.6E-07 61.3 13.9 135 29-186 110-254 (507)
460 PF08303 tRNA_lig_kinase: tRNA 97.0 0.0086 1.9E-07 52.0 10.6 58 240-301 5-62 (168)
461 cd03228 ABCC_MRP_Like The MRP 97.0 0.0025 5.3E-08 56.8 7.7 25 234-258 28-52 (171)
462 COG1936 Predicted nucleotide k 97.0 0.00047 1E-08 60.0 2.9 30 236-266 2-31 (180)
463 cd02019 NK Nucleoside/nucleoti 97.0 0.0012 2.6E-08 49.2 4.7 30 237-266 2-32 (69)
464 PRK07940 DNA polymerase III su 97.0 0.0053 1.1E-07 62.1 10.8 107 30-159 100-216 (394)
465 TIGR01360 aden_kin_iso1 adenyl 97.0 0.00072 1.6E-08 61.1 4.2 34 236-271 5-38 (188)
466 PF02562 PhoH: PhoH-like prote 97.0 0.0037 8E-08 57.0 8.7 23 236-258 21-43 (205)
467 COG2805 PilT Tfp pilus assembl 97.0 0.0015 3.2E-08 61.9 6.2 68 237-304 128-209 (353)
468 PLN02200 adenylate kinase fami 97.0 0.00075 1.6E-08 63.4 4.3 38 234-273 43-80 (234)
469 PRK02496 adk adenylate kinase; 97.0 0.00065 1.4E-08 61.3 3.8 30 236-265 3-32 (184)
470 TIGR02788 VirB11 P-type DNA tr 97.0 0.0017 3.7E-08 63.7 7.0 70 234-303 144-228 (308)
471 TIGR00959 ffh signal recogniti 97.0 0.056 1.2E-06 55.2 18.1 72 234-305 99-194 (428)
472 TIGR03420 DnaA_homol_Hda DnaA 97.0 0.011 2.5E-07 54.9 12.4 122 44-183 90-223 (226)
473 cd03115 SRP The signal recogni 97.0 0.0073 1.6E-07 53.8 10.6 32 237-268 3-37 (173)
474 PRK06620 hypothetical protein; 97.0 0.015 3.2E-07 53.8 12.8 117 44-184 85-212 (214)
475 PRK04301 radA DNA repair and r 97.0 0.0027 5.8E-08 62.6 8.3 39 231-269 98-146 (317)
476 cd00267 ABC_ATPase ABC (ATP-bi 97.0 0.0024 5.3E-08 55.9 7.2 71 234-304 25-109 (157)
477 cd03243 ABC_MutS_homologs The 97.0 0.0054 1.2E-07 56.2 9.7 22 235-256 30-51 (202)
478 cd03246 ABCC_Protease_Secretio 97.0 0.0022 4.8E-08 57.2 6.9 25 234-258 28-52 (173)
479 PF10443 RNA12: RNA12 protein; 97.0 0.032 7E-07 56.0 15.5 34 236-271 19-54 (431)
480 PRK05703 flhF flagellar biosyn 96.9 0.016 3.4E-07 59.4 13.8 36 234-269 221-261 (424)
481 PRK08903 DnaA regulatory inact 96.9 0.021 4.6E-07 53.3 13.7 124 44-186 90-224 (227)
482 TIGR02538 type_IV_pilB type IV 96.9 0.0026 5.7E-08 67.6 8.4 94 204-304 293-396 (564)
483 TIGR01351 adk adenylate kinase 96.9 0.00077 1.7E-08 62.3 3.9 34 237-272 2-35 (210)
484 cd01122 GP4d_helicase GP4d_hel 96.9 0.0046 1E-07 59.5 9.4 34 234-267 30-67 (271)
485 cd03247 ABCC_cytochrome_bd The 96.9 0.0061 1.3E-07 54.7 9.5 25 234-258 28-52 (178)
486 PRK05973 replicative DNA helic 96.9 0.0057 1.2E-07 57.2 9.5 34 234-267 64-100 (237)
487 TIGR03881 KaiC_arch_4 KaiC dom 96.9 0.007 1.5E-07 56.6 10.3 37 231-267 16-56 (229)
488 PRK04040 adenylate kinase; Pro 96.9 0.00096 2.1E-08 60.4 4.2 30 234-263 2-33 (188)
489 TIGR02236 recomb_radA DNA repa 96.9 0.0034 7.4E-08 61.7 8.5 39 231-269 91-139 (310)
490 smart00534 MUTSac ATPase domai 96.9 0.0046 1E-07 55.8 8.7 19 237-255 2-20 (185)
491 PF00406 ADK: Adenylate kinase 96.9 0.0017 3.6E-08 56.6 5.6 35 239-275 1-35 (151)
492 TIGR00064 ftsY signal recognit 96.9 0.022 4.7E-07 54.8 13.7 35 234-268 72-109 (272)
493 PRK05642 DNA replication initi 96.9 0.013 2.8E-07 55.0 12.0 121 45-184 98-231 (234)
494 PF05621 TniB: Bacterial TniB 96.9 0.011 2.4E-07 56.8 11.3 132 35-182 137-283 (302)
495 COG4088 Predicted nucleotide k 96.9 0.0055 1.2E-07 54.9 8.5 23 237-259 4-26 (261)
496 COG1121 ZnuC ABC-type Mn/Zn tr 96.9 0.0016 3.5E-08 61.0 5.6 23 236-258 32-54 (254)
497 PHA02530 pseT polynucleotide k 96.9 0.0034 7.3E-08 61.4 8.2 36 235-271 3-38 (300)
498 PF06414 Zeta_toxin: Zeta toxi 96.9 0.003 6.5E-08 57.8 7.3 40 234-273 15-55 (199)
499 cd03280 ABC_MutS2 MutS2 homolo 96.9 0.011 2.4E-07 54.1 10.9 20 236-255 30-49 (200)
500 PRK00279 adk adenylate kinase; 96.9 0.00097 2.1E-08 61.8 4.0 29 237-265 3-31 (215)
No 1
>KOG0733|consensus
Probab=100.00 E-value=1.6e-81 Score=618.79 Aligned_cols=434 Identities=34% Similarity=0.550 Sum_probs=382.9
Q ss_pred HHHhhHHHHHHHHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch----------hhHhhhcccccccccc
Q psy450 7 FHNRINEDILSHLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK----------YVYFKLCSFDSVNVKS 76 (478)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r----------~~~~~l~~~d~~~~~~ 76 (478)
|.++--++|. |.+-|+..+ ++|.+|+ .|+.++|||+||||||+|.++| +|.+||+.||.+....
T Consensus 251 f~~isApeiv----SGvSGESEk-kiRelF~-~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~ 324 (802)
T KOG0733|consen 251 FLSISAPEIV----SGVSGESEK-KIRELFD-QAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEK 324 (802)
T ss_pred eEeecchhhh----cccCcccHH-HHHHHHH-HHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccc
Confidence 4445555554 444455554 9999999 9999999999999999999997 8999999999875421
Q ss_pred ccchhhhccCCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcC
Q psy450 77 NETKDQQCKQQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTS 147 (478)
Q Consensus 77 ~~~~~~~~~~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~ 147 (478)
..+.+|+||| +||||+| |||+.|.+..|+..+|.+||+.+++++ .+..++++ +.||++|+
T Consensus 325 --------~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~l--rl~g~~d~-~qlA~lTP 393 (802)
T KOG0733|consen 325 --------TKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGL--RLSGDFDF-KQLAKLTP 393 (802)
T ss_pred --------cCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhC--CCCCCcCH-HHHHhcCC
Confidence 2356799999 9999999 999999999999999999999999988 77889999 99999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhh---------------c------------------------------------------
Q psy450 148 GFERHDLTCLVRLSVKNKMLKQ---------------G------------------------------------------ 170 (478)
Q Consensus 148 G~s~~di~~l~~~a~~~a~~~~---------------~------------------------------------------ 170 (478)
||.|+|+.++|.+|+..++.+. .
T Consensus 394 GfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~ 473 (802)
T KOG0733|consen 394 GFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSK 473 (802)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcCh
Confidence 9999999999999999987540 0
Q ss_pred --CCCCCCCHHHHHHHHHHhhhhcccCCCCCCCCCCCcccccCcHHHHHHHHHHHHhh------hhhCCCC-CceEEEeC
Q psy450 171 --INKRDLQKEDFQQIYDDLQSRYSDQLDAPSVPNVSWEDIGGLSKLKAEILSTFRGV------NRTSGLK-RSGLLLYG 241 (478)
Q Consensus 171 --~~~~~it~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~------~~~~~~~-~~~iLl~G 241 (478)
.+...|..+||+.|+..++|+..+ .+...+|.++|+||+++++++.+|...+.+| +...|.. |.|+||||
T Consensus 474 E~~~~L~i~~eDF~~Al~~iQPSakR-EGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~G 552 (802)
T KOG0733|consen 474 ELLEGLSIKFEDFEEALSKIQPSAKR-EGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCG 552 (802)
T ss_pred HHhccceecHHHHHHHHHhcCcchhc-ccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeC
Confidence 013457888999999999998654 3467899999999999999999999999998 3455666 99999999
Q ss_pred CCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHH
Q psy450 242 PPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDR 321 (478)
Q Consensus 242 p~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 321 (478)
|||||||.+|+|+|++.|.+|+.|.+++++++|+|+++..++++|.+|+.+.||||||||+|+|.++|+.++ +....+
T Consensus 553 PPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~--s~~s~R 630 (802)
T KOG0733|consen 553 PPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG--SSVSSR 630 (802)
T ss_pred CCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC--chhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997665 445589
Q ss_pred HHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHh--cCCCCCCCCHHHHH
Q psy450 322 VVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVR--KFKLSDDVSLDSLV 399 (478)
Q Consensus 322 ~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~--~~~~~~~~~~~~la 399 (478)
++++||.+|||+....+|.||++||+|+.+||+++||||||+.+|+++ |+.++|.+||+..++ +.+++.++++++|+
T Consensus 631 vvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~l-Pn~~eR~~ILK~~tkn~k~pl~~dVdl~eia 709 (802)
T KOG0733|consen 631 VVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGL-PNAEERVAILKTITKNTKPPLSSDVDLDEIA 709 (802)
T ss_pred HHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecC-CCHHHHHHHHHHHhccCCCCCCcccCHHHHh
Confidence 999999999999999999999999999999999999999999999998 699999999999999 77889999999999
Q ss_pred HhcC-CCCCHHHHHHHHHHHHHHHHHHHHhcCCCC------CCCCccccHHHHHhchhccCCCcccccccccccc
Q psy450 400 HHFP-SQMSGADIYSICSNAWTRAIRRIITSAPQV------KSAPVIVTMDDFLGACSLATAPDKFSQSVAPDNY 467 (478)
Q Consensus 400 ~~~~-~~~sg~di~~l~~~a~~~a~~r~~~~~~~~------~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~~~ 467 (478)
.... +||||+||..+|++|...|+++.+...... ......+|..||++| +++++||+++.|-
T Consensus 710 ~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA------~~~i~pSv~~~dr 778 (802)
T KOG0733|consen 710 RNTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEA------FQRIRPSVSERDR 778 (802)
T ss_pred hcccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHH------HHhcCCCccHHHH
Confidence 8652 599999999999999999999987543211 112456899999999 9999999997654
No 2
>KOG0730|consensus
Probab=100.00 E-value=1.6e-76 Score=592.25 Aligned_cols=407 Identities=37% Similarity=0.582 Sum_probs=374.4
Q ss_pred HHHhhccCccchhhhhHHHHhhhhcC-CCeEEEecccccccc---------hhhHhhhccccccccccccchhhhccCCC
Q psy450 19 LLTNYFATPRYHHLNDIVKINLKKYN-LDIFKYDEVNYLCNV---------KYVYFKLCSFDSVNVKSNETKDQQCKQQH 88 (478)
Q Consensus 19 ~~~~~~~~~~~~~~~~if~~~a~~~~-p~ilfiDe~d~i~~~---------r~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 88 (478)
++++|-++++. ++|++|. .|.+++ |+||||||+|+||++ |++.++++.||++ .+..
T Consensus 254 li~k~~gEte~-~LR~~f~-~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~------------~~~~ 319 (693)
T KOG0730|consen 254 LISKFPGETES-NLRKAFA-EALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGL------------KPDA 319 (693)
T ss_pred HHHhcccchHH-HHHHHHH-HHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhC------------cCcC
Confidence 45556555555 9999999 999999 999999999999974 4788999999965 5577
Q ss_pred cEEEEe-------eCHhHHh-ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHH
Q psy450 89 KKKLVL-------IRKQIQK-LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRL 160 (478)
Q Consensus 89 ~v~via-------ld~al~r-Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~ 160 (478)
.|+|++ ||||++| |||+.+++..|+..+|++|++.+++.+ ++..++++ ..+|..|+||.|+|+..+|++
T Consensus 320 ~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~--~~~~~~~l-~~iA~~thGyvGaDL~~l~~e 396 (693)
T KOG0730|consen 320 KVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKM--NLLSDVDL-EDIAVSTHGYVGADLAALCRE 396 (693)
T ss_pred cEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhc--CCcchhhH-HHHHHHccchhHHHHHHHHHH
Confidence 899999 9999999 999999999999999999999999999 55567887 999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhcccCCCCCCCCCCCcccccCcHHHHHHHHHHHHhhh------hhCCCC-
Q psy450 161 SVKNKMLKQGINKRDLQKEDFQQIYDDLQSRYSDQLDAPSVPNVSWEDIGGLSKLKAEILSTFRGVN------RTSGLK- 233 (478)
Q Consensus 161 a~~~a~~~~~~~~~~it~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~------~~~~~~- 233 (478)
|..++.++ ++++|..|...++|+..+... .+.|+++|+||+|++++|..|++.+.||. .+.|..
T Consensus 397 a~~~~~r~--------~~~~~~~A~~~i~psa~Re~~-ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~p 467 (693)
T KOG0730|consen 397 ASLQATRR--------TLEIFQEALMGIRPSALREIL-VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISP 467 (693)
T ss_pred HHHHHhhh--------hHHHHHHHHhcCCchhhhhee-ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCC
Confidence 99999854 889999999999999887764 78999999999999999999999999983 345644
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQED 313 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~ 313 (478)
|+|||||||||||||++|+++|++.+++|+.+.++++.++|+|++++.++++|++|+...||||||||||++.+.|++.
T Consensus 468 pkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~- 546 (693)
T KOG0730|consen 468 PKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGS- 546 (693)
T ss_pred CceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999733
Q ss_pred CCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCC
Q psy450 314 QSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDV 393 (478)
Q Consensus 314 ~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~ 393 (478)
.++..++++++||++|||+....+|+||++||+|+.||++++||||||..||+++ |+.+.|.+||+.+++++++++++
T Consensus 547 -~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVpl-PD~~aR~~Ilk~~~kkmp~~~~v 624 (693)
T KOG0730|consen 547 -SSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPL-PDLEARLEILKQCAKKMPFSEDV 624 (693)
T ss_pred -ccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecC-ccHHHHHHHHHHHHhcCCCCccc
Confidence 3377899999999999999999999999999999999999999999999999998 79999999999999999999999
Q ss_pred CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhchhccCCCcccccccccccccc
Q psy450 394 SLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGACSLATAPDKFSQSVAPDNYSL 469 (478)
Q Consensus 394 ~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~~~~~ 469 (478)
++++||..+ +||||+||.++|++|+..|+++.++ ...|+++||.+| ++..+++++..++..
T Consensus 625 dl~~La~~T-~g~SGAel~~lCq~A~~~a~~e~i~--------a~~i~~~hf~~a------l~~~r~s~~~~~~~~ 685 (693)
T KOG0730|consen 625 DLEELAQAT-EGYSGAEIVAVCQEAALLALRESIE--------ATEITWQHFEEA------LKAVRPSLTSELLEK 685 (693)
T ss_pred cHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHhcc--------cccccHHHHHHH------HHhhcccCCHHHHHH
Confidence 999999998 9999999999999999999999875 457999999999 999999999877643
No 3
>KOG0736|consensus
Probab=100.00 E-value=3.7e-68 Score=536.46 Aligned_cols=428 Identities=47% Similarity=0.730 Sum_probs=380.3
Q ss_pred HHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch----------hhHhhhccccccccccccchhhhccCC
Q psy450 18 HLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK----------YVYFKLCSFDSVNVKSNETKDQQCKQQ 87 (478)
Q Consensus 18 ~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r----------~~~~~l~~~d~~~~~~~~~~~~~~~~~ 87 (478)
.++++.-.+++. ++..+|. .|++..|||||+-.+|.++.++ ....+++ .| +...+.
T Consensus 466 el~~~s~~~~et-kl~~~f~-~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls-~e-----------~~~~~~ 531 (953)
T KOG0736|consen 466 ELVAESASHTET-KLQAIFS-RARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLS-NE-----------DFKFSC 531 (953)
T ss_pred HHhhcccchhHH-HHHHHHH-HHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHh-cc-----------cccCCC
Confidence 345556566666 8999999 9999999999999999998655 2333332 22 233467
Q ss_pred CcEEEEe-------eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHH
Q psy450 88 HKKKLVL-------IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRL 160 (478)
Q Consensus 88 ~~v~via-------ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~ 160 (478)
+.++||| +.+.+++-|-++|.++.|++++|.+||+.|+... .++.++.. +.++.+|.||+.+++.+++..
T Consensus 532 ~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~--~~n~~v~~-k~~a~~t~gfs~~~L~~l~~~ 608 (953)
T KOG0736|consen 532 PPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHL--PLNQDVNL-KQLARKTSGFSFGDLEALVAH 608 (953)
T ss_pred CceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhcc--ccchHHHH-HHHHHhcCCCCHHHHHHHhcC
Confidence 7889998 8999999999999999999999999999999887 67777887 999999999999999999887
Q ss_pred HHHHH---HHhh--------------cCCCCCCCHHHHHHHHHHhhhhcccCCCCCCCCCCCcccccCcHHHHHHHHHHH
Q psy450 161 SVKNK---MLKQ--------------GINKRDLQKEDFQQIYDDLQSRYSDQLDAPSVPNVSWEDIGGLSKLKAEILSTF 223 (478)
Q Consensus 161 a~~~a---~~~~--------------~~~~~~it~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~ 223 (478)
.-..+ +.+. ......++++||.+++.+++..+++.++.|.+|++.|+|++|++++|..+.+.+
T Consensus 609 ~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTI 688 (953)
T KOG0736|consen 609 SSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTI 688 (953)
T ss_pred chHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHh
Confidence 73332 2111 013578999999999999999999999999999999999999999999999999
Q ss_pred Hhh-----hhhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHHHHHHHHHhHhCCCeEE
Q psy450 224 RGV-----NRTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVV 297 (478)
Q Consensus 224 ~~~-----~~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il 297 (478)
..| ++..|.+ ..|||||||||||||.+|+|+|.++...|+.|.+++++++|+|++++++|++|++|+..+||||
T Consensus 689 qlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVI 768 (953)
T KOG0736|consen 689 QLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVI 768 (953)
T ss_pred cCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEE
Confidence 997 4456666 7799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC--CCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHH
Q psy450 298 FFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT--SQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRIS 375 (478)
Q Consensus 298 ~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~ 375 (478)
|+||+|+++|+|+.+++++++++|++++|+.+||++.+ ..+++||++||+|+.|||+|+||||||+.+|+.++.+.+.
T Consensus 769 FFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~es 848 (953)
T KOG0736|consen 769 FFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAES 848 (953)
T ss_pred EeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHH
Confidence 99999999999999999999999999999999999984 5689999999999999999999999999999999888999
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC-------CCCCCccccHHHHHhc
Q psy450 376 QLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQ-------VKSAPVIVTMDDFLGA 448 (478)
Q Consensus 376 r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~-------~~~~~~~it~~d~~~A 448 (478)
+..+|++..+++.++.++++.++|++|+..|||+|+.++|.+|++.|++|..+..+. .......|+++||.+|
T Consensus 849 k~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks 928 (953)
T KOG0736|consen 849 KLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKS 928 (953)
T ss_pred HHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998764332 3456778999999999
Q ss_pred hhccCCCccccccccccccc
Q psy450 449 CSLATAPDKFSQSVAPDNYS 468 (478)
Q Consensus 449 ~~~~~~l~~~~ps~~~~~~~ 468 (478)
+++++||++..++-
T Consensus 929 ------~~~l~PSvS~~EL~ 942 (953)
T KOG0736|consen 929 ------AKRLQPSVSEQELL 942 (953)
T ss_pred ------HHhcCCcccHHHHH
Confidence 99999999988764
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.7e-59 Score=508.54 Aligned_cols=424 Identities=33% Similarity=0.557 Sum_probs=366.9
Q ss_pred HHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch----------hhHhhhccccccccccccchhhhccCCC
Q psy450 19 LLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK----------YVYFKLCSFDSVNVKSNETKDQQCKQQH 88 (478)
Q Consensus 19 ~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r----------~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 88 (478)
+.++|++.... +++.+|+ .|....|+||||||+|+++++| .++++++.||++ ...+
T Consensus 248 i~~~~~g~~~~-~l~~lf~-~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l------------~~~~ 313 (733)
T TIGR01243 248 IMSKYYGESEE-RLREIFK-EAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGL------------KGRG 313 (733)
T ss_pred HhcccccHHHH-HHHHHHH-HHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcc------------ccCC
Confidence 34566666554 8999999 9999999999999999998764 577888888854 4456
Q ss_pred cEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHH
Q psy450 89 KKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVR 159 (478)
Q Consensus 89 ~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~ 159 (478)
.|+||| +|++++| ||++.++++.|+.++|.+||+.+.+.+ ++..+.++ +.+++.|+||+|+|+..+++
T Consensus 314 ~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~--~l~~d~~l-~~la~~t~G~~gadl~~l~~ 390 (733)
T TIGR01243 314 RVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM--PLAEDVDL-DKLAEVTHGFVGADLAALAK 390 (733)
T ss_pred CEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC--CCccccCH-HHHHHhCCCCCHHHHHHHHH
Confidence 788887 9999999 999999999999999999999988877 55667777 99999999999999999999
Q ss_pred HHHHHHHHhhc----------------CCCCCCCHHHHHHHHHHhhhhcccCCCCCCCCCCCcccccCcHHHHHHHHHHH
Q psy450 160 LSVKNKMLKQG----------------INKRDLQKEDFQQIYDDLQSRYSDQLDAPSVPNVSWEDIGGLSKLKAEILSTF 223 (478)
Q Consensus 160 ~a~~~a~~~~~----------------~~~~~it~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~ 223 (478)
+|+..++.+.. .....++.+||..++..+.|+..... ....|..+|++++|++.+|+.|.+.+
T Consensus 391 ~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~-~~~~~~~~~~di~g~~~~k~~l~~~v 469 (733)
T TIGR01243 391 EAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREV-LVEVPNVRWSDIGGLEEVKQELREAV 469 (733)
T ss_pred HHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchh-hccccccchhhcccHHHHHHHHHHHH
Confidence 99998865411 12346889999999999988765443 34578899999999999999999999
Q ss_pred Hhhhh------hCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHHHHHHHHHhHhCCCeE
Q psy450 224 RGVNR------TSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCV 296 (478)
Q Consensus 224 ~~~~~------~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~i 296 (478)
.++.. ..+.. ++++|||||||||||++|+++|++++.+|+.++++++.++|+|+++..++.+|..|+...|||
T Consensus 470 ~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~i 549 (733)
T TIGR01243 470 EWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAI 549 (733)
T ss_pred HhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEE
Confidence 88732 23444 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHH
Q psy450 297 VFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQ 376 (478)
Q Consensus 297 l~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r 376 (478)
|||||+|.+++.++... .....++++++|+.+|+++....+++||+|||+|+.+|++++|||||+..+++++ |+.++|
T Consensus 550 ifiDEid~l~~~r~~~~-~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~-Pd~~~R 627 (733)
T TIGR01243 550 IFFDEIDAIAPARGARF-DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPP-PDEEAR 627 (733)
T ss_pred EEEEChhhhhccCCCCC-CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCC-cCHHHH
Confidence 99999999998875432 3345678999999999998888899999999999999999999999999999998 799999
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC--------CCCCCccccHHHHHhc
Q psy450 377 LGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQ--------VKSAPVIVTMDDFLGA 448 (478)
Q Consensus 377 ~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~--------~~~~~~~it~~d~~~A 448 (478)
.+||+.+.++.++..++++..+|..+ +||||+||.++|++|+..|+++....... .......||++||.+|
T Consensus 628 ~~i~~~~~~~~~~~~~~~l~~la~~t-~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a 706 (733)
T TIGR01243 628 KEIFKIHTRSMPLAEDVDLEELAEMT-EGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEA 706 (733)
T ss_pred HHHHHHHhcCCCCCccCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHH
Confidence 99999999999999999999999987 89999999999999999999987543211 0122457999999999
Q ss_pred hhccCCCcccccccccccccc
Q psy450 449 CSLATAPDKFSQSVAPDNYSL 469 (478)
Q Consensus 449 ~~~~~~l~~~~ps~~~~~~~~ 469 (478)
+++++||++++++..
T Consensus 707 ------l~~~~ps~~~~~~~~ 721 (733)
T TIGR01243 707 ------LKKVKPSVSKEDMLR 721 (733)
T ss_pred ------HHHcCCCCCHHHHHH
Confidence 999999999877543
No 5
>KOG0735|consensus
Probab=100.00 E-value=2.3e-55 Score=439.92 Aligned_cols=386 Identities=34% Similarity=0.559 Sum_probs=334.8
Q ss_pred cchhhhhHHHHhhhhcCCCeEEEecccccccch--------h----hHhhhccccccccccccchhhhccCCCcEEEEe-
Q psy450 28 RYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK--------Y----VYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL- 94 (478)
Q Consensus 28 ~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r--------~----~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via- 94 (478)
.++.|+.+|. .+-.++|+|+++|+.|+|++.. + ++.+++++-. .-...+..|.|||
T Consensus 479 iQk~l~~vfs-e~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~----------~y~~~~~~ia~Iat 547 (952)
T KOG0735|consen 479 IQKFLNNVFS-EALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIK----------IYLKRNRKIAVIAT 547 (952)
T ss_pred HHHHHHHHHH-HHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHH----------HHHccCcEEEEEEe
Confidence 4567888999 9999999999999999999832 1 2222222111 1113455578998
Q ss_pred ------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy450 95 ------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKM 166 (478)
Q Consensus 95 ------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~ 166 (478)
++|-|-. +|+.++.++.|+..+|.+||+..+++. ......+.++-++..|+||..-|+..++.+|...+.
T Consensus 548 ~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~--~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~ 625 (952)
T KOG0735|consen 548 GQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKN--LSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAF 625 (952)
T ss_pred chhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhh--hhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHH
Confidence 8888876 899999999999999999999999764 222233334779999999999999999999999987
Q ss_pred HhhcC-CCCCCCHHHHHHHHHHhhhhcccCCCCCCCCCCCcccccCcHHHHHHHHHHHHhhhh------hCCCC-CceEE
Q psy450 167 LKQGI-NKRDLQKEDFQQIYDDLQSRYSDQLDAPSVPNVSWEDIGGLSKLKAEILSTFRGVNR------TSGLK-RSGLL 238 (478)
Q Consensus 167 ~~~~~-~~~~it~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~------~~~~~-~~~iL 238 (478)
.+... ...-++.++|.++++.+.|...+...........|++++|+.++|+.|.+.+.||.. ..+.+ +.|||
T Consensus 626 leris~~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giL 705 (952)
T KOG0735|consen 626 LERISNGPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGIL 705 (952)
T ss_pred HHHhccCcccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceE
Confidence 44222 223789999999999999998887766666669999999999999999999999832 33444 78999
Q ss_pred EeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchh
Q psy450 239 LYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGV 318 (478)
Q Consensus 239 l~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~ 318 (478)
||||||||||++|.++|..++.+|+.+.+++++++|+|.+++++|++|.+|+..+|||+|+||+|+++|+|+. ++.++
T Consensus 706 LyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGh--DsTGV 783 (952)
T KOG0735|consen 706 LYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGH--DSTGV 783 (952)
T ss_pred EECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCC--CCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999964 66788
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHH
Q psy450 319 MDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSL 398 (478)
Q Consensus 319 ~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~l 398 (478)
.++++++++.+|||...-.+|.|+++|.+|+.+||+++||||+|+.+++++ |++.+|.+|++.+...+....+++++-+
T Consensus 784 TDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~-P~~~eRl~il~~ls~s~~~~~~vdl~~~ 862 (952)
T KOG0735|consen 784 TDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPL-PDEPERLEILQVLSNSLLKDTDVDLECL 862 (952)
T ss_pred hHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCC-CCcHHHHHHHHHHhhccCCccccchHHH
Confidence 899999999999999988999999999999999999999999999999998 7999999999999998999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy450 399 VHHFPSQMSGADIYSICSNAWTRAIRRIITSA 430 (478)
Q Consensus 399 a~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~ 430 (478)
|.++ +||||+|+..++..|.+.|+.+..+..
T Consensus 863 a~~T-~g~tgADlq~ll~~A~l~avh~~l~~~ 893 (952)
T KOG0735|consen 863 AQKT-DGFTGADLQSLLYNAQLAAVHEILKRE 893 (952)
T ss_pred hhhc-CCCchhhHHHHHHHHHHHHHHHHHHhc
Confidence 9987 999999999999999999999987654
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-52 Score=430.77 Aligned_cols=404 Identities=35% Similarity=0.518 Sum_probs=356.0
Q ss_pred HHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch----------hhHhhhccccccccccccchhhhccCCCc
Q psy450 20 LTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK----------YVYFKLCSFDSVNVKSNETKDQQCKQQHK 89 (478)
Q Consensus 20 ~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r----------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 89 (478)
+++|++.... +++.+|. .++..+|+|+|+||+|++++.+ ++.+++..||++ ....
T Consensus 54 ~~~~~~~~~~-~~~~~~~-~a~~~~~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~------------~~~~- 118 (494)
T COG0464 54 LSKYVGESEL-RLRELFE-EAEKLAPSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGL------------KRGQ- 118 (494)
T ss_pred hhhhhhHHHH-HHHHHHH-HHHHhCCCeEeechhhhcccCccccccchhhHHHHHHHHhcccc------------cCCc-
Confidence 4455555554 8999999 9999999999999999999987 477888888864 3334
Q ss_pred EEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHH
Q psy450 90 KKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRL 160 (478)
Q Consensus 90 v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~ 160 (478)
|++++ +|++++| ||++.+.+..|+...|.+|+......+ ....+.+. +.++..+.|++++++..++.+
T Consensus 119 v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~--~~~~~~~~-~~~a~~~~~~~~~~~~~l~~~ 195 (494)
T COG0464 119 VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLM--FLGPPGTG-KTLAARTVGKSGADLGALAKE 195 (494)
T ss_pred eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcC--CCcccccH-HHHHHhcCCccHHHHHHHHHH
Confidence 77777 9999999 999999999999999999999999877 55556676 999999999999999999999
Q ss_pred HHHHHHHhh---cCCCCCCCHHHHHHHHHHhhhhcccCCCCCCCCCCCcccccCcHHHHHHHHHHHHhhhhhC------C
Q psy450 161 SVKNKMLKQ---GINKRDLQKEDFQQIYDDLQSRYSDQLDAPSVPNVSWEDIGGLSKLKAEILSTFRGVNRTS------G 231 (478)
Q Consensus 161 a~~~a~~~~---~~~~~~it~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~------~ 231 (478)
+......+. ......++.+|+..+++.+.++ .......|.++|++++|++.+|+.+++.+.++...+ +
T Consensus 196 ~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~ 272 (494)
T COG0464 196 AALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS---RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLG 272 (494)
T ss_pred HHHHHHHhhhccCcccccccHHHHHHHHHhcCcc---cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcC
Confidence 998887653 2456778999999999999876 223556789999999999999999999999984332 3
Q ss_pred CC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCC
Q psy450 232 LK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRG 310 (478)
Q Consensus 232 ~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~ 310 (478)
.. +.++||+||||||||++|+++|++++.+|+.+..+++.++|+|+++++++.+|..|+..+||||||||+|++.+.++
T Consensus 273 ~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~ 352 (494)
T COG0464 273 LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRG 352 (494)
T ss_pred CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCC
Confidence 44 77999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCC-
Q psy450 311 QEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKL- 389 (478)
Q Consensus 311 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~- 389 (478)
.+.... ..+++++++.+|++.....+|+||++||+|+.+|++++|||||+..+++++ |+.++|.+|++.+++....
T Consensus 353 ~~~~~~--~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~-pd~~~r~~i~~~~~~~~~~~ 429 (494)
T COG0464 353 PSEDGS--GRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPL-PDLEERLEIFKIHLRDKKPP 429 (494)
T ss_pred CCCchH--HHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCC-CCHHHHHHHHHHHhcccCCc
Confidence 544333 268999999999999999999999999999999999999999999999997 7999999999999986554
Q ss_pred -CCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhchhccCCCcccccccc
Q psy450 390 -SDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGACSLATAPDKFSQSVA 463 (478)
Q Consensus 390 -~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~ 463 (478)
..++++..+++.+ +||+|+||..+|++|.+.++++.. ...+|.+||..| +++++|+++
T Consensus 430 ~~~~~~~~~l~~~t-~~~sgadi~~i~~ea~~~~~~~~~---------~~~~~~~~~~~a------~~~~~p~~~ 488 (494)
T COG0464 430 LAEDVDLEELAEIT-EGYSGADIAALVREAALEALREAR---------RREVTLDDFLDA------LKKIKPSVT 488 (494)
T ss_pred chhhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHhc---------cCCccHHHHHHH------HHhcCCCCC
Confidence 5788999999976 899999999999999999999873 457999999999 999999986
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-51 Score=381.94 Aligned_cols=245 Identities=41% Similarity=0.656 Sum_probs=226.8
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhhh------hhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhh
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGVN------RTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPEL 270 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~------~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l 270 (478)
....|.+++++++|++++++++++.+..|+ ...|.. |+|+|||||||||||.||+|+|+..++.|+.+.++++
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 456799999999999999999999999984 345665 9999999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCC-chhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC
Q psy450 271 LNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQS-SGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349 (478)
Q Consensus 271 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 349 (478)
+.+|+|+..+.++++|..|+.++||||||||||++..+|...+.+ ....++.+.+||++|||+...+++-||++||+++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D 301 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD 301 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc
Confidence 999999999999999999999999999999999999998655443 3366788999999999999999999999999999
Q ss_pred CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy450 350 LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITS 429 (478)
Q Consensus 350 ~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~ 429 (478)
.|||+|+||||||+.|+||+ |+.+.|.+||+.+.+++++..+++++.+|+.+ +|+||+||+++|.+|.+.|+|+.
T Consensus 302 ~LDPALLRPGR~DRkIEfpl-Pd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~-~g~sGAdlkaictEAGm~AiR~~--- 376 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPL-PDEEGRAEILKIHTRKMNLADDVDLELLARLT-EGFSGADLKAICTEAGMFAIRER--- 376 (406)
T ss_pred ccChhhcCCCcccceeecCC-CCHHHHHHHHHHHhhhccCccCcCHHHHHHhc-CCCchHHHHHHHHHHhHHHHHhc---
Confidence 99999999999999999998 79999999999999999999999999999987 89999999999999999999986
Q ss_pred CCCCCCCCccccHHHHHhchhccCCCccccc
Q psy450 430 APQVKSAPVIVTMDDFLGACSLATAPDKFSQ 460 (478)
Q Consensus 430 ~~~~~~~~~~it~~d~~~A~~~~~~l~~~~p 460 (478)
...||++||.+| .+++.-
T Consensus 377 -------R~~Vt~~DF~~A------v~KV~~ 394 (406)
T COG1222 377 -------RDEVTMEDFLKA------VEKVVK 394 (406)
T ss_pred -------cCeecHHHHHHH------HHHHHh
Confidence 568999999999 665543
No 8
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.1e-43 Score=361.77 Aligned_cols=375 Identities=24% Similarity=0.357 Sum_probs=296.7
Q ss_pred CCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe----eCHhHHhccccEEEeCCCCHHHHHHH
Q psy450 45 LDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL----IRKQIQKLFLKTINVLPLTEPERRLL 120 (478)
Q Consensus 45 p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via----ld~al~rRf~~~i~~~~P~~~~r~~i 120 (478)
|+|+++-+++-++..-.+...|..+-.. .......+++++ +++.|.+-+ ..+.+|+|+.+|+.++
T Consensus 82 ~~~~vl~d~h~~~~~~~~~r~l~~l~~~----------~~~~~~~~i~~~~~~~~p~el~~~~-~~~~~~lP~~~ei~~~ 150 (489)
T CHL00195 82 PALFLLKDFNRFLNDISISRKLRNLSRI----------LKTQPKTIIIIASELNIPKELKDLI-TVLEFPLPTESEIKKE 150 (489)
T ss_pred CcEEEEecchhhhcchHHHHHHHHHHHH----------HHhCCCEEEEEcCCCCCCHHHHhce-eEEeecCcCHHHHHHH
Confidence 7899999999998653333333222110 113455678888 777777644 7789999999999999
Q ss_pred HHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhcccC-CCCC
Q psy450 121 IQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQSRYSDQ-LDAP 199 (478)
Q Consensus 121 l~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~~~~~~-~~~~ 199 (478)
++.+.... ....+.+.++.+++.+.|+|-.+++.++..+... ...++.+++...++......... .-..
T Consensus 151 l~~~~~~~--~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~k~q~~~~~~~le~ 220 (489)
T CHL00195 151 LTRLIKSL--NIKIDSELLENLTRACQGLSLERIRRVLSKIIAT--------YKTIDENSIPLILEEKKQIISQTEILEF 220 (489)
T ss_pred HHHHHHhc--CCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------cCCCChhhHHHHHHHHHHHHhhhccccc
Confidence 98888654 2334444459999999999999999998875432 23466666554444433222221 1122
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHhh---hhhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhh
Q psy450 200 SVPNVSWEDIGGLSKLKAEILSTFRGV---NRTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYI 275 (478)
Q Consensus 200 ~~~~~~~~~i~g~~~~k~~l~~~~~~~---~~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~ 275 (478)
..+..+|++++|++.+|+.+.+..... ....|.+ |+|+||+||||||||++|+++|++++.+++.++++.+.+++.
T Consensus 221 ~~~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 221 YSVNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 236788999999999999998755433 2344555 899999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccc
Q psy450 276 GQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAI 355 (478)
Q Consensus 276 g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l 355 (478)
|+++..++++|..++..+||||||||+|.++..+...+ .++...+++.+++..|+. ...+++||+|||+++.+|+++
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~-d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~al 377 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG-DSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEI 377 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC-CchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHHH
Confidence 99999999999999999999999999999987543322 344567889999999884 456799999999999999999
Q ss_pred cCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCC--CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy450 356 LRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLS--DDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQV 433 (478)
Q Consensus 356 ~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~--~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~ 433 (478)
+|+||||..+++++ |+.++|.+||+.++++.... .+.++..++..+ +||||+||.++|.+|+..|+.+
T Consensus 378 lR~GRFD~~i~v~l-P~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T-~GfSGAdI~~lv~eA~~~A~~~-------- 447 (489)
T CHL00195 378 LRKGRFDEIFFLDL-PSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLS-NKFSGAEIEQSIIEAMYIAFYE-------- 447 (489)
T ss_pred hCCCcCCeEEEeCC-cCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHc--------
Confidence 99999999999998 69999999999999886533 478899999987 8999999999999999888754
Q ss_pred CCCCccccHHHHHhchhccCCCccccccc
Q psy450 434 KSAPVIVTMDDFLGACSLATAPDKFSQSV 462 (478)
Q Consensus 434 ~~~~~~it~~d~~~A~~~~~~l~~~~ps~ 462 (478)
...+|.+||..| ++++.|+.
T Consensus 448 ---~~~lt~~dl~~a------~~~~~Pls 467 (489)
T CHL00195 448 ---KREFTTDDILLA------LKQFIPLA 467 (489)
T ss_pred ---CCCcCHHHHHHH------HHhcCCCc
Confidence 346999999999 99999973
No 9
>KOG0738|consensus
Probab=100.00 E-value=3.4e-45 Score=345.22 Aligned_cols=258 Identities=38% Similarity=0.568 Sum_probs=230.0
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhhh----hhCCC--CCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGVN----RTSGL--KRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN 272 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~----~~~~~--~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~ 272 (478)
...|++.|+||.|+.++|+.|++.+..|. ...|. +-+|+|++||||||||+||+|+|.+++..|+.|+.+.+.+
T Consensus 204 ~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 204 QRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred ccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 35788999999999999999999998872 22232 2679999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCC----CCeEEEEEcCCC
Q psy450 273 KYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTS----QDVFILGATNRV 348 (478)
Q Consensus 273 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~----~~v~vI~ttn~~ 348 (478)
+|-|++++.++-+|+.|+..+|++|||||||+|+.+|++++.+ +..+++.++||.+|||+... ..|+|+++||.|
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EH-EaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~P 362 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEH-EASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFP 362 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccch-hHHHHHHHHHHHHhhccccccccceeEEEEeccCCC
Confidence 9999999999999999999999999999999999999876443 45689999999999998653 238999999999
Q ss_pred CCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy450 349 DLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIIT 428 (478)
Q Consensus 349 ~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~ 428 (478)
|.||++++| ||.+.|++|+ |+.+.|..+++..++...+.++++++.|++++ +||||+||.++|++|.+.++||.+.
T Consensus 363 WdiDEAlrR--RlEKRIyIPL-P~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~-eGySGaDI~nvCreAsm~~mRR~i~ 438 (491)
T KOG0738|consen 363 WDIDEALRR--RLEKRIYIPL-PDAEARSALIKILLRSVELDDPVNLEDLAERS-EGYSGADITNVCREASMMAMRRKIA 438 (491)
T ss_pred cchHHHHHH--HHhhheeeeC-CCHHHHHHHHHHhhccccCCCCccHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 9999999999 69999999999999999999999999999998 9999999999999999999999875
Q ss_pred cCCC-------CCCCCccccHHHHHhchhccCCCcccccccccccc
Q psy450 429 SAPQ-------VKSAPVIVTMDDFLGACSLATAPDKFSQSVAPDNY 467 (478)
Q Consensus 429 ~~~~-------~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~~~ 467 (478)
.... ......+++.+||..| +++++||++.+++
T Consensus 439 g~~~~ei~~lakE~~~~pv~~~Dfe~A------l~~v~pSvs~~d~ 478 (491)
T KOG0738|consen 439 GLTPREIRQLAKEEPKMPVTNEDFEEA------LRKVRPSVSAADL 478 (491)
T ss_pred cCCcHHhhhhhhhccccccchhhHHHH------HHHcCcCCCHHHH
Confidence 4322 1223367999999999 9999999997665
No 10
>KOG0733|consensus
Probab=100.00 E-value=1.7e-43 Score=349.91 Aligned_cols=223 Identities=39% Similarity=0.693 Sum_probs=206.1
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhh-----hhhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhh
Q psy450 202 PNVSWEDIGGLSKLKAEILSTFRGV-----NRTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYI 275 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~~~~-----~~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~ 275 (478)
++++|.+++|+++...+|.+++... +...|.. |+|+|||||||||||++|+++|.+++.||+.++.+++++.+.
T Consensus 185 snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 3779999999999999999988764 4455655 899999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCC----CCeEEEEEcCCCCCC
Q psy450 276 GQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTS----QDVFILGATNRVDLL 351 (478)
Q Consensus 276 g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~----~~v~vI~ttn~~~~l 351 (478)
|+++++++++|+.|....|||+||||||.+.++|.. .+-.-.++++.+|+..||++... .+|+||++||+|+.|
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~--aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl 342 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE--AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL 342 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhh--HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence 999999999999999999999999999999999854 33344579999999999998664 579999999999999
Q ss_pred CccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy450 352 DPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIIT 428 (478)
Q Consensus 352 d~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~ 428 (478)
||+|+|+||||+.|.+.. |++..|.+||+.+++++.++.++++..||+.+ .||.|+|+.++|.+|+..|++|.++
T Consensus 343 DpaLRRaGRFdrEI~l~v-P~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lT-PGfVGADL~AL~~~Aa~vAikR~ld 417 (802)
T KOG0733|consen 343 DPALRRAGRFDREICLGV-PSETAREEILRIICRGLRLSGDFDFKQLAKLT-PGFVGADLMALCREAAFVAIKRILD 417 (802)
T ss_pred CHHHhccccccceeeecC-CchHHHHHHHHHHHhhCCCCCCcCHHHHHhcC-CCccchhHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999 69999999999999999999999999999987 7999999999999999999999875
No 11
>KOG0734|consensus
Probab=100.00 E-value=7.4e-43 Score=340.30 Aligned_cols=233 Identities=35% Similarity=0.564 Sum_probs=216.0
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhh-----hhhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhh
Q psy450 202 PNVSWEDIGGLSKLKAEILSTFRGV-----NRTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYI 275 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~~~~-----~~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~ 275 (478)
.++.|+|+-|.+++|++|++++... +.+.|-+ |+||||+||||||||.|||++|.+.+.||++..++++-..|+
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred cccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 4788999999999999999998876 2234444 999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccc
Q psy450 276 GQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAI 355 (478)
Q Consensus 276 g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l 355 (478)
|...+.++++|..|+..+||||||||+|++.++|..... .+.+..+++||.+|||+..+.+++||++||.|+.||++|
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~--~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL 456 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ--HYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKAL 456 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHH--HHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHh
Confidence 999999999999999999999999999999999865433 377899999999999999999999999999999999999
Q ss_pred cCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy450 356 LRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQVKS 435 (478)
Q Consensus 356 ~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~~~ 435 (478)
.||||||+++.+|. |+..-|.+||+.++.++....++|+.-||+.+ .||+|+||.++++.|+..|....
T Consensus 457 ~RPGRFD~~v~Vp~-PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT-~GFsGAdLaNlVNqAAlkAa~dg--------- 525 (752)
T KOG0734|consen 457 TRPGRFDRHVTVPL-PDVRGRTEILKLYLSKIPLDEDVDPKIIARGT-PGFSGADLANLVNQAALKAAVDG--------- 525 (752)
T ss_pred cCCCccceeEecCC-CCcccHHHHHHHHHhcCCcccCCCHhHhccCC-CCCchHHHHHHHHHHHHHHHhcC---------
Confidence 99999999999999 69999999999999999999999999999998 79999999999999999888764
Q ss_pred CCccccHHHHHhc
Q psy450 436 APVIVTMDDFLGA 448 (478)
Q Consensus 436 ~~~~it~~d~~~A 448 (478)
...||+.|++.|
T Consensus 526 -a~~VtM~~LE~a 537 (752)
T KOG0734|consen 526 -AEMVTMKHLEFA 537 (752)
T ss_pred -cccccHHHHhhh
Confidence 557999999999
No 12
>KOG0739|consensus
Probab=100.00 E-value=8.4e-42 Score=311.72 Aligned_cols=259 Identities=33% Similarity=0.524 Sum_probs=225.6
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhhh-----hhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGVN-----RTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL 271 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~-----~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~ 271 (478)
..+.|++.|+++.|++.+|+.|++.+..|. +..+.. -++|||||||||||++||+++|.+.+..|+.|+.++++
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLv 203 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 203 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHH
Confidence 456899999999999999999999988873 222222 57999999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC-CCCeEEEEEcCCCCC
Q psy450 272 NKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT-SQDVFILGATNRVDL 350 (478)
Q Consensus 272 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~v~vI~ttn~~~~ 350 (478)
++|.|++++.++++|+.|+.+.|+||||||||.+++.++ .+.+...+++..+|+.+|+|+.. +.+++|+++||-||.
T Consensus 204 SKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~--enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~ 281 (439)
T KOG0739|consen 204 SKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRS--ENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWV 281 (439)
T ss_pred HHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCC--CCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchh
Confidence 999999999999999999999999999999999998874 34556678999999999999865 457999999999999
Q ss_pred CCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy450 351 LDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLS-DDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITS 429 (478)
Q Consensus 351 ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~ 429 (478)
||.+++| ||+++||+|+ |+...|...++.++...+.. .+.++.+|+.++ +||+|+||.-++++|.+..+|+....
T Consensus 282 LDsAIRR--RFekRIYIPL-Pe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kT-eGySGsDisivVrDalmePvRkvqsA 357 (439)
T KOG0739|consen 282 LDSAIRR--RFEKRIYIPL-PEAHARARMFKLHLGDTPHVLTEQDFKELARKT-EGYSGSDISIVVRDALMEPVRKVQSA 357 (439)
T ss_pred HHHHHHH--HhhcceeccC-CcHHHhhhhheeccCCCccccchhhHHHHHhhc-CCCCcCceEEEehhhhhhhHHHhhhh
Confidence 9999999 9999999999 69999999999888765532 356799999987 99999999999999999999997532
Q ss_pred CCC------------------------------------CCCCCccccHHHHHhchhccCCCccccccccccccc
Q psy450 430 APQ------------------------------------VKSAPVIVTMDDFLGACSLATAPDKFSQSVAPDNYS 468 (478)
Q Consensus 430 ~~~------------------------------------~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~~~~ 468 (478)
... ..--..+||+.||..+ +++.+|.++++|+.
T Consensus 358 thFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~------l~~tkPTvn~~Dl~ 426 (439)
T KOG0739|consen 358 THFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKS------LSRTKPTVNEDDLL 426 (439)
T ss_pred hhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHH------HhhcCCCCCHHHHH
Confidence 100 0113567999999999 99999999998863
No 13
>KOG0727|consensus
Probab=100.00 E-value=2.5e-40 Score=295.70 Aligned_cols=239 Identities=41% Similarity=0.666 Sum_probs=218.7
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhhh------hhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhh
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGVN------RTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPEL 270 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~------~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l 270 (478)
....|.+++.|++|++-+|+.+++.+..|+ ..-|.. |+|+|+|||||||||++++++|+.....|+.+.++++
T Consensus 146 ~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsef 225 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 225 (408)
T ss_pred CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH
Confidence 345689999999999999999999999883 344554 9999999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCC-CCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC
Q psy450 271 LNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQED-QSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349 (478)
Q Consensus 271 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 349 (478)
+.+|.|+...-++++|+.|+.++|+||||||+|.++.+|-..+ ......++++-+|+++|||+....++.||++||+.+
T Consensus 226 vqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnrad 305 (408)
T KOG0727|consen 226 VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD 305 (408)
T ss_pred HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc
Confidence 9999999999999999999999999999999999998875433 333456788999999999999999999999999999
Q ss_pred CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy450 350 LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITS 429 (478)
Q Consensus 350 ~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~ 429 (478)
.+||+++||||+|+.|+||+ |++.++.-++..+..++.+++++++++++.+- +..+|+||.++|++|.+.|++..
T Consensus 306 tldpallrpgrldrkiefpl-pdrrqkrlvf~titskm~ls~~vdle~~v~rp-dkis~adi~aicqeagm~avr~n--- 380 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEFPL-PDRRQKRLVFSTITSKMNLSDEVDLEDLVARP-DKISGADINAICQEAGMLAVREN--- 380 (408)
T ss_pred ccCHhhcCCccccccccCCC-CchhhhhhhHHhhhhcccCCcccCHHHHhcCc-cccchhhHHHHHHHHhHHHHHhc---
Confidence 99999999999999999998 69999999999999999999999999999875 89999999999999999999985
Q ss_pred CCCCCCCCccccHHHHHhc
Q psy450 430 APQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 430 ~~~~~~~~~~it~~d~~~A 448 (478)
.-.+...||++|
T Consensus 381 -------ryvvl~kd~e~a 392 (408)
T KOG0727|consen 381 -------RYVVLQKDFEKA 392 (408)
T ss_pred -------ceeeeHHHHHHH
Confidence 557999999999
No 14
>KOG0728|consensus
Probab=100.00 E-value=1.7e-39 Score=290.11 Aligned_cols=239 Identities=37% Similarity=0.653 Sum_probs=219.4
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhh------hhhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhh
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGV------NRTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPEL 270 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~------~~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l 270 (478)
...+|..+++-++|++++++.+++.+..| +...|.. |+|+|||||||||||.+|+++|+...+.|+.++++++
T Consensus 138 VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgsel 217 (404)
T KOG0728|consen 138 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 217 (404)
T ss_pred hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHH
Confidence 34578888999999999999999999987 3345666 9999999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCC-chhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC
Q psy450 271 LNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQS-SGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349 (478)
Q Consensus 271 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 349 (478)
+.+|+|+...-++++|-.|+.++|+|||+||||++...|..++.. ....++..-+|++++||+....++-||.+||+.+
T Consensus 218 vqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnrid 297 (404)
T KOG0728|consen 218 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRID 297 (404)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccc
Confidence 999999999999999999999999999999999999877543322 3345678889999999999999999999999999
Q ss_pred CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy450 350 LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITS 429 (478)
Q Consensus 350 ~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~ 429 (478)
.+||+++||||+|+.|+||. |+.+.|.+|++.+-+++++....++..+|++. .|.+|+++..+|.+|.+.|+++-
T Consensus 298 ild~allrpgridrkiefp~-p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm-~gasgaevk~vcteagm~alrer--- 372 (404)
T KOG0728|consen 298 ILDPALLRPGRIDRKIEFPP-PNEEARLDILKIHSRKMNLTRGINLRKIAEKM-PGASGAEVKGVCTEAGMYALRER--- 372 (404)
T ss_pred cccHhhcCCCcccccccCCC-CCHHHHHHHHHHhhhhhchhcccCHHHHHHhC-CCCccchhhhhhhhhhHHHHHHh---
Confidence 99999999999999999996 79999999999999999999999999999999 79999999999999999999886
Q ss_pred CCCCCCCCccccHHHHHhc
Q psy450 430 APQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 430 ~~~~~~~~~~it~~d~~~A 448 (478)
..++|++||+-|
T Consensus 373 -------rvhvtqedfema 384 (404)
T KOG0728|consen 373 -------RVHVTQEDFEMA 384 (404)
T ss_pred -------hccccHHHHHHH
Confidence 668999999999
No 15
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.1e-39 Score=292.83 Aligned_cols=242 Identities=33% Similarity=0.532 Sum_probs=212.2
Q ss_pred CCCCCCcccccCcHHHHHHHHHHH---HhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhc
Q psy450 200 SVPNVSWEDIGGLSKLKAEILSTF---RGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIG 276 (478)
Q Consensus 200 ~~~~~~~~~i~g~~~~k~~l~~~~---~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g 276 (478)
..++.+++|++|++.+|...+-++ ..|.......|+++|||||||||||++|+++|++.+.|++.++..++++.++|
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVG 193 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVG 193 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhh
Confidence 457788999999999998866544 44444445569999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCcccc
Q psy450 277 QSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAIL 356 (478)
Q Consensus 277 ~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~ 356 (478)
.....++++++.|+..+|||+||||+|.+.-.|.-+. --+...++++.||.+||++..+.+++.|++||+|+.||++++
T Consensus 194 dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQe-lRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiR 272 (368)
T COG1223 194 DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQE-LRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIR 272 (368)
T ss_pred hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHH-hcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHH
Confidence 9999999999999999999999999999986653222 122345789999999999999999999999999999999999
Q ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHH-HHHHHHHHHHHHHHHhcCCCCCC
Q psy450 357 RPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIY-SICSNAWTRAIRRIITSAPQVKS 435 (478)
Q Consensus 357 ~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~-~l~~~a~~~a~~r~~~~~~~~~~ 435 (478)
+ ||...|.|.+ |+.++|..|++.+++++++.-+.++..++.++ .|+||+||. .+++.|..+|+.+.
T Consensus 273 s--RFEeEIEF~L-P~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t-~g~SgRdikekvlK~aLh~Ai~ed--------- 339 (368)
T COG1223 273 S--RFEEEIEFKL-PNDEERLEILEYYAKKFPLPVDADLRYLAAKT-KGMSGRDIKEKVLKTALHRAIAED--------- 339 (368)
T ss_pred h--hhhheeeeeC-CChHHHHHHHHHHHHhCCCccccCHHHHHHHh-CCCCchhHHHHHHHHHHHHHHHhc---------
Confidence 9 9999999999 69999999999999999999999999999997 899999986 56777778888775
Q ss_pred CCccccHHHHHhchhccCCCccccccc
Q psy450 436 APVIVTMDDFLGACSLATAPDKFSQSV 462 (478)
Q Consensus 436 ~~~~it~~d~~~A~~~~~~l~~~~ps~ 462 (478)
...|+.+||..| +++.++.-
T Consensus 340 -~e~v~~edie~a------l~k~r~~r 359 (368)
T COG1223 340 -REKVEREDIEKA------LKKERKRR 359 (368)
T ss_pred -hhhhhHHHHHHH------HHhhcccc
Confidence 457999999999 77655543
No 16
>KOG0731|consensus
Probab=100.00 E-value=5.7e-39 Score=332.01 Aligned_cols=238 Identities=37% Similarity=0.628 Sum_probs=217.4
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhh-----hhhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGV-----NRTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN 272 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~-----~~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~ 272 (478)
...+.+.|+|+.|.+++|++|.+++... ....|.+ |+|+||+||||||||.||+|+|.+.+.||+.+++++++.
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 4456689999999999999999998876 4566777 999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCC--CCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC
Q psy450 273 KYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQ--EDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDL 350 (478)
Q Consensus 273 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~--~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 350 (478)
.+.|.....++++|..|+...|||+||||||.+...+++ ....+..-+..+++|+.+||++.....|+|+++||+|+.
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc
Confidence 999999999999999999999999999999999998853 222333446789999999999999989999999999999
Q ss_pred CCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy450 351 LDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLS-DDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITS 429 (478)
Q Consensus 351 ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~ 429 (478)
+|++++||||||+.+++++ |+...|..|++.++++.++. +++++..+|.++ .||+|+||.++|++|+..|.++.
T Consensus 463 ld~allrpGRfdr~i~i~~-p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t-~gf~gadl~n~~neaa~~a~r~~--- 537 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDL-PDVKGRASILKVHLRKKKLDDEDVDLSKLASLT-PGFSGADLANLCNEAALLAARKG--- 537 (774)
T ss_pred cCHHhcCCCccccceeccC-CchhhhHHHHHHHhhccCCCcchhhHHHHHhcC-CCCcHHHHHhhhhHHHHHHHHhc---
Confidence 9999999999999999998 79999999999999999985 778899988887 79999999999999999999986
Q ss_pred CCCCCCCCccccHHHHHhc
Q psy450 430 APQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 430 ~~~~~~~~~~it~~d~~~A 448 (478)
...|+..||..|
T Consensus 538 -------~~~i~~~~~~~a 549 (774)
T KOG0731|consen 538 -------LREIGTKDLEYA 549 (774)
T ss_pred -------cCccchhhHHHH
Confidence 557999999999
No 17
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=3.5e-38 Score=315.21 Aligned_cols=246 Identities=37% Similarity=0.634 Sum_probs=219.3
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhhhh------hCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhh
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGVNR------TSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPEL 270 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~------~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l 270 (478)
....|..+|++|+|++.+++.+.+.+..|.. ..|.. |+++||+||||||||++|+++|++++.+++.+.++++
T Consensus 136 ~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l 215 (398)
T PTZ00454 136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF 215 (398)
T ss_pred ccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 4457899999999999999999999987732 34544 8999999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCC-CchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC
Q psy450 271 LNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQ-SSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349 (478)
Q Consensus 271 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 349 (478)
...|.|.++..++.+|..++...|+||||||+|.+.+++.+... ......+++.+++..++++....+++||++||+|+
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d 295 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 295 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch
Confidence 99999999999999999999999999999999999877643222 22345678889999999987778899999999999
Q ss_pred CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy450 350 LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITS 429 (478)
Q Consensus 350 ~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~ 429 (478)
.+|++++|+|||+..|++++ |+.++|..||+.++.+.++..++++.+++..+ +||||+||.++|++|.+.|+++.
T Consensus 296 ~LDpAllR~GRfd~~I~~~~-P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t-~g~sgaDI~~l~~eA~~~A~r~~--- 370 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPL-PDRRQKRLIFQTITSKMNLSEEVDLEDFVSRP-EKISAADIAAICQEAGMQAVRKN--- 370 (398)
T ss_pred hCCHHHcCCCcccEEEEeCC-cCHHHHHHHHHHHHhcCCCCcccCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHcC---
Confidence 99999999999999999997 79999999999999999999999999999987 89999999999999999999874
Q ss_pred CCCCCCCCccccHHHHHhchhccCCCcccccc
Q psy450 430 APQVKSAPVIVTMDDFLGACSLATAPDKFSQS 461 (478)
Q Consensus 430 ~~~~~~~~~~it~~d~~~A~~~~~~l~~~~ps 461 (478)
...|+++||.+| ++++...
T Consensus 371 -------~~~i~~~df~~A------~~~v~~~ 389 (398)
T PTZ00454 371 -------RYVILPKDFEKG------YKTVVRK 389 (398)
T ss_pred -------CCccCHHHHHHH------HHHHHhc
Confidence 458999999999 7665443
No 18
>KOG0726|consensus
Probab=100.00 E-value=1.4e-39 Score=296.36 Aligned_cols=238 Identities=37% Similarity=0.645 Sum_probs=217.4
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhhh------hhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGVN------RTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL 271 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~------~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~ 271 (478)
...|..++.|++|++.+++.+++.+..|+ ...|.+ |+|++|||+||||||.||+++|+...+.|+.+.+++++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 34578899999999999999999999883 345666 99999999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCC-chhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC
Q psy450 272 NKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQS-SGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDL 350 (478)
Q Consensus 272 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 350 (478)
.+|.|+..+.++++|+.|..++|+|+||||||.+..+|..+... ....++.+-+|++++|++...+.+-||.+||+.+.
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~ 336 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 336 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc
Confidence 99999999999999999999999999999999999888654332 23556777789999999999999999999999999
Q ss_pred CCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy450 351 LDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSA 430 (478)
Q Consensus 351 ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~ 430 (478)
|||+|.||||+|+.|.|++ |+...+..||+.+..++.+..+++++++...- +.+||+||.++|.+|.+.|+|..
T Consensus 337 LDPaLiRPGrIDrKIef~~-pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~k-ddlSGAdIkAictEaGllAlRer---- 410 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPL-PDEKTKKKIFQIHTSRMTLAEDVNLEELIMTK-DDLSGADIKAICTEAGLLALRER---- 410 (440)
T ss_pred cCHhhcCCCccccccccCC-CchhhhceeEEEeecccchhccccHHHHhhcc-cccccccHHHHHHHHhHHHHHHH----
Confidence 9999999999999999999 69999999999999999999999999998755 88999999999999999999886
Q ss_pred CCCCCCCccccHHHHHhc
Q psy450 431 PQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 431 ~~~~~~~~~it~~d~~~A 448 (478)
.-.+|++||.+|
T Consensus 411 ------Rm~vt~~DF~ka 422 (440)
T KOG0726|consen 411 ------RMKVTMEDFKKA 422 (440)
T ss_pred ------HhhccHHHHHHH
Confidence 346999999999
No 19
>KOG0652|consensus
Probab=100.00 E-value=4e-39 Score=289.26 Aligned_cols=239 Identities=35% Similarity=0.630 Sum_probs=219.1
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhh------hhhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhh
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGV------NRTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPEL 270 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~------~~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l 270 (478)
....|...+++|+|++++++.|.+.+..| +...|.. |+|+|+|||||||||.+||++|...+..|+.+.++.+
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence 45568889999999999999999998877 3345665 8999999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCc-hhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC
Q psy450 271 LNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSS-GVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349 (478)
Q Consensus 271 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 349 (478)
+..|+|...+.+++.|.-|+...|+||||||+|.+..+|..+...+ ...++.+-+|++++||+.+...+.||++||+.+
T Consensus 242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvD 321 (424)
T KOG0652|consen 242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVD 321 (424)
T ss_pred HhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccc
Confidence 9999999999999999999999999999999999998886554433 355677888999999999999999999999999
Q ss_pred CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy450 350 LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITS 429 (478)
Q Consensus 350 ~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~ 429 (478)
.+||+++|.||+|+.|+||. |+.+.|..|++.+.+++.+.++++++++++-+ ++|+|+...++|-+|.+.|++|.
T Consensus 322 iLDPALlRSGRLDRKIEfP~-Pne~aRarIlQIHsRKMnv~~DvNfeELaRsT-ddFNGAQcKAVcVEAGMiALRr~--- 396 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPH-PNEEARARILQIHSRKMNVSDDVNFEELARST-DDFNGAQCKAVCVEAGMIALRRG--- 396 (424)
T ss_pred ccCHHHhhcccccccccCCC-CChHHHHHHHHHhhhhcCCCCCCCHHHHhhcc-cccCchhheeeehhhhHHHHhcc---
Confidence 99999999999999999999 69999999999999999999999999999865 99999999999999999999996
Q ss_pred CCCCCCCCccccHHHHHhc
Q psy450 430 APQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 430 ~~~~~~~~~~it~~d~~~A 448 (478)
...|+.+||.++
T Consensus 397 -------atev~heDfmeg 408 (424)
T KOG0652|consen 397 -------ATEVTHEDFMEG 408 (424)
T ss_pred -------cccccHHHHHHH
Confidence 557999999999
No 20
>KOG0737|consensus
Probab=100.00 E-value=4.4e-39 Score=304.16 Aligned_cols=260 Identities=36% Similarity=0.546 Sum_probs=229.3
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCC--------CCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechh
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGL--------KRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPE 269 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~--------~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~ 269 (478)
.+..-.++|+||+|++.+++.+++.+..|.+.++. +++||||+||||||||.+|+++|++.|.+|+.|.++.
T Consensus 83 ~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~ 162 (386)
T KOG0737|consen 83 PPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSN 162 (386)
T ss_pred chhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccc
Confidence 45556789999999999999999999988544322 3789999999999999999999999999999999999
Q ss_pred hhhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCC--eEEEEEcCC
Q psy450 270 LLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQD--VFILGATNR 347 (478)
Q Consensus 270 l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~--v~vI~ttn~ 347 (478)
+.+++.|++++.++.+|..|.+..||||||||+|.+.+.|. ....+....+.++|+...||+..+.+ |+|+|+||+
T Consensus 163 lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~--s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNR 240 (386)
T KOG0737|consen 163 LTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR--STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNR 240 (386)
T ss_pred cchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc--cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCC
Confidence 99999999999999999999999999999999999998883 33344567888999999999987665 999999999
Q ss_pred CCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy450 348 VDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRII 427 (478)
Q Consensus 348 ~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~ 427 (478)
|..+|.+++| |+...+++++ |+.++|.+||+.++++.++++++|+.++|..+ +||||+||.++|+.|+...++..+
T Consensus 241 P~DlDeAiiR--R~p~rf~V~l-P~~~qR~kILkviLk~e~~e~~vD~~~iA~~t-~GySGSDLkelC~~Aa~~~ire~~ 316 (386)
T KOG0737|consen 241 PFDLDEAIIR--RLPRRFHVGL-PDAEQRRKILKVILKKEKLEDDVDLDEIAQMT-EGYSGSDLKELCRLAALRPIRELL 316 (386)
T ss_pred CccHHHHHHH--hCcceeeeCC-CchhhHHHHHHHHhcccccCcccCHHHHHHhc-CCCcHHHHHHHHHHHhHhHHHHHH
Confidence 9999999999 9999999999 68999999999999999999999999999987 999999999999999999999988
Q ss_pred hcC--C---CC-------------CCCCccccHHHHHhchhccCCCcccccccccccccc
Q psy450 428 TSA--P---QV-------------KSAPVIVTMDDFLGACSLATAPDKFSQSVAPDNYSL 469 (478)
Q Consensus 428 ~~~--~---~~-------------~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~~~~~ 469 (478)
.+. . +. .....+++++||..| +.++.++++.+...+
T Consensus 317 ~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a------~~~v~~~~~~~~t~~ 370 (386)
T KOG0737|consen 317 VSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKA------INRVSASVAMDATRM 370 (386)
T ss_pred HhcccchhhhhhhhhccCCcccccccccCcccHHHHHHH------HHhhhhHHHHhhhhh
Confidence 764 1 10 112578999999999 888888866554443
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=4.3e-37 Score=309.16 Aligned_cols=250 Identities=44% Similarity=0.687 Sum_probs=222.1
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhhhh------hCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhh
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGVNR------TSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPEL 270 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~------~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l 270 (478)
....|.++|++++|++++++.+.+.+..+.. ..|.. |+++||+||||||||++|+++|++++.+|+.++++++
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l 201 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH
Confidence 4557889999999999999999999987733 23444 8899999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCC-chhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC
Q psy450 271 LNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQS-SGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349 (478)
Q Consensus 271 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 349 (478)
...|.|.++..++.+|..++...|+||||||+|.+.+.++..+.+ .....+.+.+++..++++....++.||+|||+++
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~ 281 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRID 281 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999999776544332 2344567788888899887778999999999999
Q ss_pred CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy450 350 LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITS 429 (478)
Q Consensus 350 ~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~ 429 (478)
.+|++++|||||+..+++++ |+.++|.+||+.++++..+..++++..++..+ +||+|+||.++|++|+..|+++.
T Consensus 282 ~ld~allRpgRfd~~I~v~~-P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t-~g~sgadl~~l~~eA~~~a~~~~--- 356 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPL-PDEEGRLEILKIHTRKMNLADDVDLEELAELT-EGASGADLKAICTEAGMFAIRDD--- 356 (389)
T ss_pred hCCHHHcCCccCceEEEECC-CCHHHHHHHHHHHhccCCCCCcCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHcC---
Confidence 99999999999999999997 79999999999999999988889999999987 89999999999999999998873
Q ss_pred CCCCCCCCccccHHHHHhchhccCCCcccccccccc
Q psy450 430 APQVKSAPVIVTMDDFLGACSLATAPDKFSQSVAPD 465 (478)
Q Consensus 430 ~~~~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~ 465 (478)
...||.+||.+| +++++++...+
T Consensus 357 -------~~~i~~~d~~~A------~~~~~~~~~~~ 379 (389)
T PRK03992 357 -------RTEVTMEDFLKA------IEKVMGKEEKD 379 (389)
T ss_pred -------CCCcCHHHHHHH------HHHHhcccccc
Confidence 456999999999 99998876554
No 22
>KOG0729|consensus
Probab=100.00 E-value=1.3e-37 Score=280.23 Aligned_cols=247 Identities=34% Similarity=0.594 Sum_probs=221.5
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhhh------hhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhh
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGVN------RTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPEL 270 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~------~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l 270 (478)
....|.+++.|++|..++++.+++.+..|. -..|.. |+|+|+|||||||||.+|+++|+..+..|+.+-++++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 355689999999999999999999999883 234554 8999999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCC-CCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC
Q psy450 271 LNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQED-QSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349 (478)
Q Consensus 271 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 349 (478)
+.+|+|+...-++++|+.|+....||||+||+|.+.+.|-..+ ...+..++.+.+++.++|++...+++.|+.+||+|+
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpd 327 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPD 327 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCC
Confidence 9999999999999999999999999999999999998774332 233455778888999999999999999999999999
Q ss_pred CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy450 350 LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITS 429 (478)
Q Consensus 350 ~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~ 429 (478)
.|||+|+||||+|+.++|.+ |+.+-|..|++.+.+.+.+..+..++-+++.| .+-+|++|+.+|.+|.+.|++.-
T Consensus 328 tldpallrpgrldrkvef~l-pdlegrt~i~kihaksmsverdir~ellarlc-pnstgaeirsvcteagmfairar--- 402 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGL-PDLEGRTHIFKIHAKSMSVERDIRFELLARLC-PNSTGAEIRSVCTEAGMFAIRAR--- 402 (435)
T ss_pred CcCHhhcCCcccccceeccC-CcccccceeEEEeccccccccchhHHHHHhhC-CCCcchHHHHHHHHhhHHHHHHH---
Confidence 99999999999999999999 69999999999999999999999999999999 57899999999999999999865
Q ss_pred CCCCCCCCccccHHHHHhchhccCCCccccccc
Q psy450 430 APQVKSAPVIVTMDDFLGACSLATAPDKFSQSV 462 (478)
Q Consensus 430 ~~~~~~~~~~it~~d~~~A~~~~~~l~~~~ps~ 462 (478)
....|..||..| +.++..++
T Consensus 403 -------rk~atekdfl~a------v~kvvkgy 422 (435)
T KOG0729|consen 403 -------RKVATEKDFLDA------VNKVVKGY 422 (435)
T ss_pred -------hhhhhHHHHHHH------HHHHHHHH
Confidence 336899999999 66665443
No 23
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-37 Score=311.38 Aligned_cols=236 Identities=36% Similarity=0.618 Sum_probs=216.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhh-----hhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhh
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVN-----RTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKY 274 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~-----~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~ 274 (478)
...+.|.|+.|.+++|+.+.+.+.... ...|.+ |+|++|+||||||||++|+++|.+.+.||+.+++++++..+
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 567889999999999999999988763 233555 99999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCC-CCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCc
Q psy450 275 IGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQE-DQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDP 353 (478)
Q Consensus 275 ~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~-~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~ 353 (478)
+|...+.+|++|.+|++.+|||+||||+|.+...|+.+ +.....-+..+++++.+||++..+..++|+++||+|+.+|+
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ 303 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDP 303 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchH
Confidence 99999999999999999999999999999999888543 22333445789999999999998889999999999999999
Q ss_pred cccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy450 354 AILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQV 433 (478)
Q Consensus 354 ~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~ 433 (478)
+|+||||||+.+.++. |+-..|+.|++.+.++.++..++++..+|+.+ .||+|+|+.+++++|+..|.++.
T Consensus 304 ALlRpgRFDRqI~V~~-PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~t-pGfsGAdL~nl~NEAal~aar~n------- 374 (596)
T COG0465 304 ALLRPGRFDRQILVEL-PDIKGREQILKVHAKNKPLAEDVDLKKIARGT-PGFSGADLANLLNEAALLAARRN------- 374 (596)
T ss_pred hhcCCCCcceeeecCC-cchhhHHHHHHHHhhcCCCCCcCCHHHHhhhC-CCcccchHhhhHHHHHHHHHHhc-------
Confidence 9999999999999999 69999999999999999999999999999887 79999999999999999999986
Q ss_pred CCCCccccHHHHHhc
Q psy450 434 KSAPVIVTMDDFLGA 448 (478)
Q Consensus 434 ~~~~~~it~~d~~~A 448 (478)
...|++.||.+|
T Consensus 375 ---~~~i~~~~i~ea 386 (596)
T COG0465 375 ---KKEITMRDIEEA 386 (596)
T ss_pred ---CeeEeccchHHH
Confidence 567999999999
No 24
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=4.5e-36 Score=301.58 Aligned_cols=243 Identities=37% Similarity=0.617 Sum_probs=215.4
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhhhh------hCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGVNR------TSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL 271 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~------~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~ 271 (478)
...|..+|++|+|++.+++.+.+.+..+.. ..|.. +.++||+||||||||++|+++|++++.+++.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 456889999999999999999999987643 23444 88999999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCC-CchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC
Q psy450 272 NKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQ-SSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDL 350 (478)
Q Consensus 272 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 350 (478)
+.|.|..+..++.+|..|....|+||||||+|.+..++..... ......+.+.+++..++++....++.||++||+++.
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES 334 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH
Confidence 9999999999999999999999999999999999977643322 222345677888999998877778999999999999
Q ss_pred CCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy450 351 LDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSA 430 (478)
Q Consensus 351 ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~ 430 (478)
+|++++|+|||+..|++++ |+.++|.+||+.++.++.+..++++..++..+ +||+|+||.++|++|++.|+++.
T Consensus 335 LDpaLlRpGRfd~~I~~~~-Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t-~g~sgAdI~~i~~eA~~~Alr~~---- 408 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPN-PDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAK-DELSGADIKAICTEAGLLALRER---- 408 (438)
T ss_pred hhHHhccCCeeEEEEEeCC-CCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhc----
Confidence 9999999999999999997 79999999999999999999999999999987 89999999999999999999875
Q ss_pred CCCCCCCccccHHHHHhchhccCCCcccc
Q psy450 431 PQVKSAPVIVTMDDFLGACSLATAPDKFS 459 (478)
Q Consensus 431 ~~~~~~~~~it~~d~~~A~~~~~~l~~~~ 459 (478)
...||++||.+| ++++.
T Consensus 409 ------r~~Vt~~D~~~A------~~~v~ 425 (438)
T PTZ00361 409 ------RMKVTQADFRKA------KEKVL 425 (438)
T ss_pred ------CCccCHHHHHHH------HHHHH
Confidence 457999999999 66653
No 25
>KOG0741|consensus
Probab=100.00 E-value=8.4e-36 Score=290.84 Aligned_cols=341 Identities=18% Similarity=0.306 Sum_probs=246.0
Q ss_pred HHHhhccCccchhhhhHHHHhhhh--------cCCCeEEEecccccccch------------hhHhhhcccccccccccc
Q psy450 19 LLTNYFATPRYHHLNDIVKINLKK--------YNLDIFKYDEVNYLCNVK------------YVYFKLCSFDSVNVKSNE 78 (478)
Q Consensus 19 ~~~~~~~~~~~~~~~~if~~~a~~--------~~p~ilfiDe~d~i~~~r------------~~~~~l~~~d~~~~~~~~ 78 (478)
+|++|-|++++ ++|++|. +|.+ -.-.||+|||||+||+.| +||+||+.||++
T Consensus 293 IL~KYVGeSE~-NvR~LFa-DAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGV------ 364 (744)
T KOG0741|consen 293 ILNKYVGESEE-NVRKLFA-DAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGV------ 364 (744)
T ss_pred HHHHhhcccHH-HHHHHHH-hHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccH------
Confidence 45566666666 9999999 7753 235799999999999988 899999999954
Q ss_pred chhhhccCCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcC--CCCCCChhHHHHHHHhcC
Q psy450 79 TKDQQCKQQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLG--GDYGFDASLVEYLSSVTS 147 (478)
Q Consensus 79 ~~~~~~~~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~--~~~~~~~~~i~~la~~t~ 147 (478)
+.-++|+||| ||+||+| ||.-.+++.+||+..|.+|++.+++++. ..++.++|+ ++||.+|.
T Consensus 365 ------eqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl-~elA~lTK 437 (744)
T KOG0741|consen 365 ------EQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDL-KELAALTK 437 (744)
T ss_pred ------HhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCH-HHHHHHhc
Confidence 7778899999 9999999 9999999999999999999999998864 346788998 99999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhh------------cCCCCCCCHHHHHHHHHHhhhhcccCCCCCCCCCCCcccccCc-HH
Q psy450 148 GFERHDLTCLVRLSVKNKMLKQ------------GINKRDLQKEDFQQIYDDLQSRYSDQLDAPSVPNVSWEDIGGL-SK 214 (478)
Q Consensus 148 G~s~~di~~l~~~a~~~a~~~~------------~~~~~~it~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~g~-~~ 214 (478)
+|||++|+.+++.|...|+.+. ..++.+++..||..|+.+++|++...... ....-...++-. ..
T Consensus 438 NfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~--l~~~~~~Gmi~~g~~ 515 (744)
T KOG0741|consen 438 NFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEED--LERFVMNGMINWGPP 515 (744)
T ss_pred CCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHH--HHHHHhCCceeeccc
Confidence 9999999999999999887652 23567899999999999999886542110 000000001111 11
Q ss_pred HHHHHHH---HHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechh-hhhhhhcchHHHHHHHHHHhH
Q psy450 215 LKAEILS---TFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPE-LLNKYIGQSEENIRNVFLKAR 290 (478)
Q Consensus 215 ~k~~l~~---~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~-l~~~~~g~~~~~~~~~~~~a~ 290 (478)
+-+-+.+ ++.........+-.++||+||||+|||+||-.+|...+.||+.+-.++ +++..-......+..+|+.|.
T Consensus 516 v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 516 VTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAY 595 (744)
T ss_pred HHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhh
Confidence 1111111 122222222222567999999999999999999999999999775543 332212222335789999999
Q ss_pred hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCC-CeEEEEEcCCCCCCCc-cccCCCCCCeEEEeC
Q psy450 291 SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQ-DVFILGATNRVDLLDP-AILRPGRLDKSLYVG 368 (478)
Q Consensus 291 ~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~v~vI~ttn~~~~ld~-~l~~~~Rf~~~i~~~ 368 (478)
+..-+||++|+++.|..-..-+.. +...++.+|+..+....+.+ +.+|++||++.+.|.. .+.. .|+..+.+|
T Consensus 596 kS~lsiivvDdiErLiD~vpIGPR---fSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vp 670 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYVPIGPR---FSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVP 670 (744)
T ss_pred cCcceEEEEcchhhhhcccccCch---hhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecC
Confidence 999899999999998743322222 23456777777776654443 6788888887654432 3445 888999997
Q ss_pred CCCCHHHHHHHHH
Q psy450 369 LYEDRISQLGVLK 381 (478)
Q Consensus 369 ~pp~~~~r~~il~ 381 (478)
.-.+.++..+++.
T Consensus 671 nl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 671 NLTTGEQLLEVLE 683 (744)
T ss_pred ccCchHHHHHHHH
Confidence 7444456555554
No 26
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=3.3e-35 Score=305.61 Aligned_cols=245 Identities=36% Similarity=0.620 Sum_probs=214.1
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhhh-----hhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGVN-----RTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL 271 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~-----~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~ 271 (478)
....|..+|++++|++.+|+++.+.+.... ...|.. |+++||+||||||||++|+++|++++.+++.++++++.
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 344688999999999999999998877542 222333 88999999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCC-CCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC
Q psy450 272 NKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQED-QSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDL 350 (478)
Q Consensus 272 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 350 (478)
+.+.|.+.+.++.+|..++...||||||||+|.+..+++... .......+.+++|+.+|+++....+++||+|||+|+.
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ 205 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDV 205 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhh
Confidence 999999999999999999999999999999999998765421 1223345788999999999888889999999999999
Q ss_pred CCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy450 351 LDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSA 430 (478)
Q Consensus 351 ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~ 430 (478)
+|++++|||||+..+++++ |+.++|.+|++.++++.....+.++..++..+ .||+|+||.++|++|+..|.++.
T Consensus 206 ld~al~r~gRfd~~i~i~~-Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t-~G~sgadl~~l~~eA~~~a~~~~---- 279 (495)
T TIGR01241 206 LDPALLRPGRFDRQVVVDL-PDIKGREEILKVHAKNKKLAPDVDLKAVARRT-PGFSGADLANLLNEAALLAARKN---- 279 (495)
T ss_pred cCHHHhcCCcceEEEEcCC-CCHHHHHHHHHHHHhcCCCCcchhHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHcC----
Confidence 9999999999999999998 79999999999999988887888899999987 89999999999999998887653
Q ss_pred CCCCCCCccccHHHHHhchhccCCCccccc
Q psy450 431 PQVKSAPVIVTMDDFLGACSLATAPDKFSQ 460 (478)
Q Consensus 431 ~~~~~~~~~it~~d~~~A~~~~~~l~~~~p 460 (478)
...||.+||..| +.++..
T Consensus 280 ------~~~i~~~~l~~a------~~~~~~ 297 (495)
T TIGR01241 280 ------KTEITMNDIEEA------IDRVIA 297 (495)
T ss_pred ------CCCCCHHHHHHH------HHHHhc
Confidence 457999999999 666544
No 27
>KOG0741|consensus
Probab=100.00 E-value=1.3e-35 Score=289.49 Aligned_cols=262 Identities=38% Similarity=0.645 Sum_probs=222.9
Q ss_pred CCCCCCCccc--ccCcHHHHHHHHH-HHHhh------hhhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCC-cEEEEec
Q psy450 199 PSVPNVSWED--IGGLSKLKAEILS-TFRGV------NRTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRM-NFLAVKG 267 (478)
Q Consensus 199 ~~~~~~~~~~--i~g~~~~k~~l~~-~~~~~------~~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~-~~~~v~~ 267 (478)
...|...|++ |+|+++.-..+-+ ++..- ....|.+ .+|+|||||||||||.+||.|.+.++. +--.|++
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNG 290 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNG 290 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCc
Confidence 3456666765 6888877665533 22211 3345666 789999999999999999999999964 4567899
Q ss_pred hhhhhhhhcchHHHHHHHHHHhHh--------CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCe
Q psy450 268 PELLNKYIGQSEENIRNVFLKARS--------AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDV 339 (478)
Q Consensus 268 ~~l~~~~~g~~~~~~~~~~~~a~~--------~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v 339 (478)
++++++|+|+++.++|.+|..|.. ..-.||++||+|+++.+|++...++++.+.++++||..|||+..-.++
T Consensus 291 PeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNI 370 (744)
T KOG0741|consen 291 PEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNI 370 (744)
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcE
Confidence 999999999999999999998832 223699999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCC----CCCCCCHHHHHHhcCCCCCHHHHHHHH
Q psy450 340 FILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFK----LSDDVSLDSLVHHFPSQMSGADIYSIC 415 (478)
Q Consensus 340 ~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~----~~~~~~~~~la~~~~~~~sg~di~~l~ 415 (478)
+||+-||+.+.+|++|+|||||...+++.+ |++.-|.+|++.+.+++. ++.++++.+||..+ .+|||++|..++
T Consensus 371 LVIGMTNR~DlIDEALLRPGRlEVqmEIsL-PDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lT-KNfSGAEleglV 448 (744)
T KOG0741|consen 371 LVIGMTNRKDLIDEALLRPGRLEVQMEISL-PDEKGRLQILKIHTKRMRENNKLSADVDLKELAALT-KNFSGAELEGLV 448 (744)
T ss_pred EEEeccCchhhHHHHhcCCCceEEEEEEeC-CCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHh-cCCchhHHHHHH
Confidence 999999999999999999999999999999 699999999988887653 67899999999997 899999999999
Q ss_pred HHHHHHHHHHHHhcCCC-----CCCCCccccHHHHHhchhccCCCccccccc--cccccc
Q psy450 416 SNAWTRAIRRIITSAPQ-----VKSAPVIVTMDDFLGACSLATAPDKFSQSV--APDNYS 468 (478)
Q Consensus 416 ~~a~~~a~~r~~~~~~~-----~~~~~~~it~~d~~~A~~~~~~l~~~~ps~--~~~~~~ 468 (478)
+.|.-.|+.|.++.+.. ...+...||++||..| +..++|+. +++++.
T Consensus 449 ksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~a------L~dVkPAFG~see~l~ 502 (744)
T KOG0741|consen 449 KSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNA------LEDVKPAFGISEEDLE 502 (744)
T ss_pred HHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHH------HHhcCcccCCCHHHHH
Confidence 99999999999876522 2356778999999999 99999984 555554
No 28
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=7.1e-34 Score=284.89 Aligned_cols=239 Identities=45% Similarity=0.706 Sum_probs=210.8
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhhhhh------CCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhh
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGVNRT------SGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPEL 270 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~------~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l 270 (478)
....|.++|++++|++++++.+.+.+..+... .|.. |+++||+||||||||++|+++|+.++.+++.+.+.++
T Consensus 113 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l 192 (364)
T TIGR01242 113 VEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 192 (364)
T ss_pred eccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence 44578899999999999999999998876332 3333 8899999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCC-chhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC
Q psy450 271 LNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQS-SGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349 (478)
Q Consensus 271 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 349 (478)
...+.|.....++.+|..++...|+||||||+|.+...+.....+ .....+.+.+++..++++....++.||+|||+++
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPD 272 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999998766433222 2234567788888888877777899999999999
Q ss_pred CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy450 350 LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITS 429 (478)
Q Consensus 350 ~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~ 429 (478)
.+|++++++|||+..++++. |+.++|.+|++.++.+..+..++++..++..+ .||+|+||.++|++|+..|+++.
T Consensus 273 ~ld~al~r~grfd~~i~v~~-P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t-~g~sg~dl~~l~~~A~~~a~~~~--- 347 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPL-PDFEGRLEILKIHTRKMKLAEDVDLEAIAKMT-EGASGADLKAICTEAGMFAIREE--- 347 (364)
T ss_pred hCChhhcCcccCceEEEeCC-cCHHHHHHHHHHHHhcCCCCccCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhC---
Confidence 99999999999999999997 79999999999999998888888999999987 89999999999999999998874
Q ss_pred CCCCCCCCccccHHHHHhc
Q psy450 430 APQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 430 ~~~~~~~~~~it~~d~~~A 448 (478)
...||.+||.+|
T Consensus 348 -------~~~i~~~d~~~a 359 (364)
T TIGR01242 348 -------RDYVTMDDFIKA 359 (364)
T ss_pred -------CCccCHHHHHHH
Confidence 457999999999
No 29
>KOG0651|consensus
Probab=100.00 E-value=3.1e-35 Score=270.55 Aligned_cols=240 Identities=39% Similarity=0.625 Sum_probs=212.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhh------hCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhh
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNR------TSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK 273 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~------~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~ 273 (478)
.-+++|++++|+-.+...+.+.+..+.. +-|.+ |.+++||||||+|||.+|+++|..++++|+.+..+++.++
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred ccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 3467899999999999999998887732 23555 8999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCch-hHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCC
Q psy450 274 YIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSG-VMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLD 352 (478)
Q Consensus 274 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~-~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 352 (478)
|.|++.+.+++.|..|+...|||||+||+|...+++.+.+.++. ..++.+..|+++|+++....+|.+|+|||+|+.|+
T Consensus 206 yiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLd 285 (388)
T KOG0651|consen 206 YIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLD 285 (388)
T ss_pred hcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccc
Confidence 99999999999999999999999999999999998855444433 45567777888899998889999999999999999
Q ss_pred ccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy450 353 PAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQ 432 (478)
Q Consensus 353 ~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~ 432 (478)
|+|+||||+++.+++|+ |+...|..|++.+...+......+.+.+.+.. +||+|+|+++.|++|...|++..
T Consensus 286 paLlRpGRldrk~~iPl-pne~~r~~I~Kih~~~i~~~Geid~eaivK~~-d~f~gad~rn~~tEag~Fa~~~~------ 357 (388)
T KOG0651|consen 286 PALLRPGRLDRKVEIPL-PNEQARLGILKIHVQPIDFHGEIDDEAILKLV-DGFNGADLRNVCTEAGMFAIPEE------ 357 (388)
T ss_pred hhhcCCccccceeccCC-cchhhceeeEeeccccccccccccHHHHHHHH-hccChHHHhhhcccccccccchh------
Confidence 99999999999999999 69999999999998888888888899988877 99999999999999998888775
Q ss_pred CCCCCccccHHHHHhchhcc
Q psy450 433 VKSAPVIVTMDDFLGACSLA 452 (478)
Q Consensus 433 ~~~~~~~it~~d~~~A~~~~ 452 (478)
...+-+|||..+.+..
T Consensus 358 ----~~~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 358 ----RDEVLHEDFMKLVRKQ 373 (388)
T ss_pred ----hHHHhHHHHHHHHHHH
Confidence 3457899999994433
No 30
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=9e-34 Score=297.81 Aligned_cols=237 Identities=38% Similarity=0.652 Sum_probs=208.5
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHhhhh-----hCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhh
Q psy450 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNR-----TSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK 273 (478)
Q Consensus 200 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~-----~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~ 273 (478)
..+..+|++++|++++++.+.+.+..... ..+.. ++++||+||||||||++|+++|++++.+++.++++++...
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 34567899999999999999988766521 22333 8899999999999999999999999999999999999998
Q ss_pred hhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCC-CCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCC
Q psy450 274 YIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQED-QSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLD 352 (478)
Q Consensus 274 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 352 (478)
+.|.....++.+|..++...||||||||+|.+...++.+. .........+++|+.+++++..+.+++||++||+++.+|
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD 335 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILD 335 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhh
Confidence 9998889999999999999999999999999987764332 223344678899999999988888999999999999999
Q ss_pred ccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy450 353 PAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQ 432 (478)
Q Consensus 353 ~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~ 432 (478)
++++|||||+..+.+++ |+.++|.+||+.++++.....++++..++.++ .||+|+||.++|++|+..|.++.
T Consensus 336 ~ALlRpGRFd~~I~v~l-Pd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t-~G~sgaDL~~lvneAal~a~r~~------ 407 (638)
T CHL00176 336 AALLRPGRFDRQITVSL-PDREGRLDILKVHARNKKLSPDVSLELIARRT-PGFSGADLANLLNEAAILTARRK------ 407 (638)
T ss_pred hhhhccccCceEEEECC-CCHHHHHHHHHHHHhhcccchhHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHhC------
Confidence 99999999999999998 69999999999999988888888899999987 79999999999999998887764
Q ss_pred CCCCCccccHHHHHhc
Q psy450 433 VKSAPVIVTMDDFLGA 448 (478)
Q Consensus 433 ~~~~~~~it~~d~~~A 448 (478)
...||++||.+|
T Consensus 408 ----~~~It~~dl~~A 419 (638)
T CHL00176 408 ----KATITMKEIDTA 419 (638)
T ss_pred ----CCCcCHHHHHHH
Confidence 457999999999
No 31
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=1.8e-33 Score=286.19 Aligned_cols=246 Identities=43% Similarity=0.675 Sum_probs=201.5
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhhh------hhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCc---------
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGVN------RTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMN--------- 261 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~------~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~--------- 261 (478)
....|..+|++|+|++.+++++.+.+..+. ...|.+ |+++|||||||||||++|+++|++++.+
T Consensus 173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~ 252 (512)
T TIGR03689 173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKS 252 (512)
T ss_pred eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCce
Confidence 466789999999999999999999988763 233554 8899999999999999999999998654
Q ss_pred -EEEEechhhhhhhhcchHHHHHHHHHHhHhC----CCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCC
Q psy450 262 -FLAVKGPELLNKYIGQSEENIRNVFLKARSA----APCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTS 336 (478)
Q Consensus 262 -~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 336 (478)
|+.+..+++.++|.|+++..++.+|..++.. .|+||||||+|.++.+++.+. ++....+++++|+..|+++...
T Consensus 253 ~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~-s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 253 YFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV-SSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred eEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc-cchHHHHHHHHHHHHhcccccC
Confidence 5667778899999999999999999988763 699999999999998775432 2334467889999999999888
Q ss_pred CCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhc-CCCC---------CCCCHHHHHHh-----
Q psy450 337 QDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRK-FKLS---------DDVSLDSLVHH----- 401 (478)
Q Consensus 337 ~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~-~~~~---------~~~~~~~la~~----- 401 (478)
.+++||+|||+++.||++++||||||..|++++ |+.++|.+||+.++.. +++. ...+...++..
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~-Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~ 410 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIER-PDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHL 410 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCC-CCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999997 7999999999988764 3331 11122333222
Q ss_pred -----------------------cCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhchhc
Q psy450 402 -----------------------FPSQMSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGACSL 451 (478)
Q Consensus 402 -----------------------~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A~~~ 451 (478)
.++.+||++|.++|.+|...|+++.+... ...++++|+..|+.-
T Consensus 411 ~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~------~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 411 YATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGG------QVGLRIEHLLAAVLD 477 (512)
T ss_pred hhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcC------CcCcCHHHHHHHHHH
Confidence 14568999999999999999999987533 457999999999433
No 32
>KOG0740|consensus
Probab=100.00 E-value=1.5e-33 Score=276.46 Aligned_cols=259 Identities=33% Similarity=0.497 Sum_probs=222.7
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHhhhhh----CCCC--CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhh
Q psy450 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNRT----SGLK--RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK 273 (478)
Q Consensus 200 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~----~~~~--~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~ 273 (478)
..+++.|+++.|++.+|+.+.+.+.+|..+ .|.+ ++++||.||||+|||++++++|.+.+..|+.++.+.+.++
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 356788999999999999999999998432 2333 7899999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC--CCCeEEEEEcCCCCCC
Q psy450 274 YIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT--SQDVFILGATNRVDLL 351 (478)
Q Consensus 274 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~v~vI~ttn~~~~l 351 (478)
|+|++++.++.+|.-|+...|+|+||||+|+++.+|.+ ......+++..+++.++++... .++++||+|||+||.+
T Consensus 226 ~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~--~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~ 303 (428)
T KOG0740|consen 226 YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD--NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWEL 303 (428)
T ss_pred ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC--cccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHH
Confidence 99999999999999999999999999999999998843 3334447888999888887654 4479999999999999
Q ss_pred CccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCC-CCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhc-
Q psy450 352 DPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFK-LSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITS- 429 (478)
Q Consensus 352 d~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~-~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~- 429 (478)
|.+++| ||..++++|+ |+.+.|..+|+.++.+.+ ...+.++..+++.+ +||+|+||.++|++|++...+.....
T Consensus 304 Dea~~R--rf~kr~yipl-Pd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~T-egysgsdi~~l~kea~~~p~r~~~~~~ 379 (428)
T KOG0740|consen 304 DEAARR--RFVKRLYIPL-PDYETRSLLWKQLLKEQPNGLSDLDISLLAKVT-EGYSGSDITALCKEAAMGPLRELGGTT 379 (428)
T ss_pred HHHHHH--HhhceeeecC-CCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh-cCcccccHHHHHHHhhcCchhhcccch
Confidence 999999 9999999998 799999999999887763 33456799999887 99999999999999998888876542
Q ss_pred -CC-CCCCCCccccHHHHHhchhccCCCccccccccccccccc
Q psy450 430 -AP-QVKSAPVIVTMDDFLGACSLATAPDKFSQSVAPDNYSLS 470 (478)
Q Consensus 430 -~~-~~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~~~~~~ 470 (478)
.. .......+++..||..| ++.++|+++...+..+
T Consensus 380 ~~~~~~~~~~r~i~~~df~~a------~~~i~~~~s~~~l~~~ 416 (428)
T KOG0740|consen 380 DLEFIDADKIRPITYPDFKNA------FKNIKPSVSLEGLEKY 416 (428)
T ss_pred hhhhcchhccCCCCcchHHHH------HHhhccccCccccchh
Confidence 11 13345667999999999 9999999998766443
No 33
>KOG0730|consensus
Probab=100.00 E-value=1.5e-32 Score=276.28 Aligned_cols=232 Identities=41% Similarity=0.678 Sum_probs=211.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhhhh------hCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhh
Q psy450 202 PNVSWEDIGGLSKLKAEILSTFRGVNR------TSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKY 274 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~~~~~~------~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~ 274 (478)
+..+ ++++|.....+.+.+.+..+.+ ..|.+ |+++|+|||||||||.+++++|++.++.++.++++++.+++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5556 7999999999999999998843 23445 89999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHhHhCC-CeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCc
Q psy450 275 IGQSEENIRNVFLKARSAA-PCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDP 353 (478)
Q Consensus 275 ~g~~~~~~~~~~~~a~~~~-p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~ 353 (478)
.|+++++++..|+.+.+.+ |+++||||+|.++|++..... ...++..+++..|++.....+++|+++||+|+.||+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~---~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~ 335 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD---VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDP 335 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch---HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccCh
Confidence 9999999999999999999 999999999999998865433 568999999999999988899999999999999999
Q ss_pred cccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy450 354 AILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQV 433 (478)
Q Consensus 354 ~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~ 433 (478)
+++| ||||..+.+.. |+...|.+|++.++++++..+++++.+++..+ .||+|+|+..+|++|...+.++
T Consensus 336 alRR-gRfd~ev~Igi-P~~~~RldIl~~l~k~~~~~~~~~l~~iA~~t-hGyvGaDL~~l~~ea~~~~~r~-------- 404 (693)
T KOG0730|consen 336 ALRR-GRFDREVEIGI-PGSDGRLDILRVLTKKMNLLSDVDLEDIAVST-HGYVGADLAALCREASLQATRR-------- 404 (693)
T ss_pred hhhc-CCCcceeeecC-CCchhHHHHHHHHHHhcCCcchhhHHHHHHHc-cchhHHHHHHHHHHHHHHHhhh--------
Confidence 9999 99999999999 69999999999999999998889999999987 8999999999999999999998
Q ss_pred CCCCccccHHHHHhchhccCCCcccccc
Q psy450 434 KSAPVIVTMDDFLGACSLATAPDKFSQS 461 (478)
Q Consensus 434 ~~~~~~it~~d~~~A~~~~~~l~~~~ps 461 (478)
|+++|..| +..++||
T Consensus 405 -------~~~~~~~A------~~~i~ps 419 (693)
T KOG0730|consen 405 -------TLEIFQEA------LMGIRPS 419 (693)
T ss_pred -------hHHHHHHH------HhcCCch
Confidence 56677777 6666655
No 34
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=4e-32 Score=288.73 Aligned_cols=245 Identities=33% Similarity=0.595 Sum_probs=214.5
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHhhhh-----hCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhh
Q psy450 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNR-----TSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK 273 (478)
Q Consensus 200 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~-----~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~ 273 (478)
......|+++.|.+..++.+.+.+..... ..+.. +++++|+||||||||+++++++++++.+|+.++++++...
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~ 224 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 224 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHh
Confidence 34566799999999999999998876521 22233 7889999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCC-CCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCC
Q psy450 274 YIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQED-QSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLD 352 (478)
Q Consensus 274 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 352 (478)
+.|.....++.+|..++...||||||||+|.+..+++.+. .......+.+++++.+|+++..+.+++||+|||+|+.+|
T Consensus 225 ~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD 304 (644)
T PRK10733 225 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304 (644)
T ss_pred hhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcC
Confidence 9999999999999999999999999999999998775422 222344578899999999998888999999999999999
Q ss_pred ccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy450 353 PAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQ 432 (478)
Q Consensus 353 ~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~ 432 (478)
++++|||||++.+++++ |+.++|.+|++.++++.++..++++..+++.+ .||||+||.++|++|+..|+++.
T Consensus 305 ~Al~RpgRfdr~i~v~~-Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t-~G~sgadl~~l~~eAa~~a~r~~------ 376 (644)
T PRK10733 305 PALLRPGRFDRQVVVGL-PDVRGREQILKVHMRRVPLAPDIDAAIIARGT-PGFSGADLANLVNEAALFAARGN------ 376 (644)
T ss_pred HHHhCCcccceEEEcCC-CCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhC-CCCCHHHHHHHHHHHHHHHHHcC------
Confidence 99999999999999998 69999999999999999998899999999987 89999999999999999988763
Q ss_pred CCCCCccccHHHHHhchhccCCCccccccc
Q psy450 433 VKSAPVIVTMDDFLGACSLATAPDKFSQSV 462 (478)
Q Consensus 433 ~~~~~~~it~~d~~~A~~~~~~l~~~~ps~ 462 (478)
...||.+||.+| +.++.++.
T Consensus 377 ----~~~i~~~d~~~a------~~~v~~g~ 396 (644)
T PRK10733 377 ----KRVVSMVEFEKA------KDKIMMGA 396 (644)
T ss_pred ----CCcccHHHHHHH------HHHHhccc
Confidence 457999999999 76665543
No 35
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.98 E-value=3.1e-31 Score=253.65 Aligned_cols=217 Identities=22% Similarity=0.295 Sum_probs=169.1
Q ss_pred CCcccc-cCcHHHHHHHHHHHHhh----hhhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcc
Q psy450 204 VSWEDI-GGLSKLKAEILSTFRGV----NRTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQ 277 (478)
Q Consensus 204 ~~~~~i-~g~~~~k~~l~~~~~~~----~~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~ 277 (478)
.+|+++ +|+--.+.-+...+... ...++.+ |.+++||||||||||++|+++|++++.+++.++++++.++|.|+
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGE 191 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGE 191 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCc
Confidence 445666 55544444444433332 3334555 99999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhHh-----CCCeEEEEcCCccccCCCCCCCCCchhHHHH-HHHHHHhhcCC------------CCCCCe
Q psy450 278 SEENIRNVFLKARS-----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRV-VSQLLAEMDGV------------HTSQDV 339 (478)
Q Consensus 278 ~~~~~~~~~~~a~~-----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~-~~~ll~~l~~~------------~~~~~v 339 (478)
+++.++++|..|.. .+||||||||||.+++++++. +.....++ ..+|++.+|+. ....++
T Consensus 192 sEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~--~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V 269 (413)
T PLN00020 192 PGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT--QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRV 269 (413)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC--CcchHHHHHHHHHHHHhcCCccccccccccccccCCCc
Confidence 99999999999974 479999999999999988632 22332344 47899988863 235579
Q ss_pred EEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCC---CCHHHHHHHHH
Q psy450 340 FILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQ---MSGADIYSICS 416 (478)
Q Consensus 340 ~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~---~sg~di~~l~~ 416 (478)
+||+|||+|+.||++|+|+||||+.++ + |+.++|.+|++.++++.+++ ..++..|+..++.. |.|+--..+..
T Consensus 270 ~VIaTTNrpd~LDpALlRpGRfDk~i~--l-Pd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd 345 (413)
T PLN00020 270 PIIVTGNDFSTLYAPLIRDGRMEKFYW--A-PTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYD 345 (413)
T ss_pred eEEEeCCCcccCCHhHcCCCCCCceeC--C-CCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHH
Confidence 999999999999999999999999764 4 69999999999999998876 46788888876322 66765566666
Q ss_pred HHHHHHHHHH
Q psy450 417 NAWTRAIRRI 426 (478)
Q Consensus 417 ~a~~~a~~r~ 426 (478)
++....+.+.
T Consensus 346 ~~v~~~i~~~ 355 (413)
T PLN00020 346 DEVRKWIAEV 355 (413)
T ss_pred HHHHHHHHHh
Confidence 6666655553
No 36
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.98 E-value=1.7e-31 Score=294.29 Aligned_cols=195 Identities=17% Similarity=0.298 Sum_probs=163.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhh---------------------------------------
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKY--------------------------------------- 274 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~--------------------------------------- 274 (478)
|+||||+||||||||++|+++|.+++.||+.++++++++.+
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~~ 1709 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALT 1709 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchhh
Confidence 89999999999999999999999999999999999998654
Q ss_pred --hcchH--HHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC---CCCCeEEEEEcCC
Q psy450 275 --IGQSE--ENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH---TSQDVFILGATNR 347 (478)
Q Consensus 275 --~g~~~--~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---~~~~v~vI~ttn~ 347 (478)
.+..+ ..++.+|+.|+..+||||||||||.+..+.. . ...+.+|+.+|++.. ...+|+||||||+
T Consensus 1710 ~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~--~ltL~qLLneLDg~~~~~s~~~VIVIAATNR 1781 (2281)
T CHL00206 1710 MDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------N--YLSLGLLVNSLSRDCERCSTRNILVIASTHI 1781 (2281)
T ss_pred hhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------c--eehHHHHHHHhccccccCCCCCEEEEEeCCC
Confidence 11222 2388899999999999999999999986521 0 123788899998753 3557999999999
Q ss_pred CCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHH--hcCCCCCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q psy450 348 VDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVV--RKFKLSDD-VSLDSLVHHFPSQMSGADIYSICSNAWTRAIR 424 (478)
Q Consensus 348 ~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~--~~~~~~~~-~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~ 424 (478)
|+.+|||++||||||+.|+++. |+..+|.+++..++ +++.+..+ +++..+|..+ .||+|+||.++|++|+..|++
T Consensus 1782 PD~LDPALLRPGRFDR~I~Ir~-Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T-~GfSGADLanLvNEAaliAir 1859 (2281)
T CHL00206 1782 PQKVDPALIAPNKLNTCIKIRR-LLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSIT-MGSNARDLVALTNEALSISIT 1859 (2281)
T ss_pred cccCCHhHcCCCCCCeEEEeCC-CCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhC-CCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 57777888877543 45555543 6799999987 899999999999999999999
Q ss_pred HHHhcCCCCCCCCccccHHHHHhc
Q psy450 425 RIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 425 r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
+. ...|+.+||..|
T Consensus 1860 q~----------ks~Id~~~I~~A 1873 (2281)
T CHL00206 1860 QK----------KSIIDTNTIRSA 1873 (2281)
T ss_pred cC----------CCccCHHHHHHH
Confidence 85 457999999999
No 37
>KOG0732|consensus
Probab=99.97 E-value=2.2e-31 Score=282.58 Aligned_cols=312 Identities=29% Similarity=0.472 Sum_probs=238.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHH--------HHHhhhhcccCCCCCCCCCCCccccc
Q psy450 139 VEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQI--------YDDLQSRYSDQLDAPSVPNVSWEDIG 210 (478)
Q Consensus 139 i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a--------~~~~~~~~~~~~~~~~~~~~~~~~i~ 210 (478)
+...++.+.++.++.....+.+++....... ...+.. .+..+ ....++. ++.-..-....+.|++++
T Consensus 194 ~r~~~~s~~~~~~~~~~~~~~~~~~i~~~~s---~~~~~~-~~~~~~t~~~~~~~~~~~~~-~d~dp~~~~~~v~fd~vg 268 (1080)
T KOG0732|consen 194 KRGQVQSRLHMHKSSGDTERSRSLRIESWSS---GKNLQS-LFDKLNTKGLQTAGLRVQKE-ADSDPLSVDSSVGFDSVG 268 (1080)
T ss_pred hhhhhcccccccccccchhhhhhhhhhhccc---ccccch-hhhhhhcCccccchhhcccc-cccCchhhhcccCccccc
Confidence 3566667777777777777777666553221 111111 11111 1111111 111111223568899999
Q ss_pred CcHHHHHHHHHHHHhhh------hhCCCC-CceEEEeCCCCChHHHHHHHHHHHh-----CCcEEEEechhhhhhhhcch
Q psy450 211 GLSKLKAEILSTFRGVN------RTSGLK-RSGLLLYGPPGTGKTLIAKAVATEC-----RMNFLAVKGPELLNKYIGQS 278 (478)
Q Consensus 211 g~~~~k~~l~~~~~~~~------~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~-----~~~~~~v~~~~l~~~~~g~~ 278 (478)
|++.++.+|++.+..|+ ...+.. |+|+|++||||||||++|+++|..+ +..|+.-++++..++|+|+.
T Consensus 269 gl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEa 348 (1080)
T KOG0732|consen 269 GLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEA 348 (1080)
T ss_pred cHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcH
Confidence 99999999999998873 223344 8999999999999999999999887 34567777899999999999
Q ss_pred HHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCC
Q psy450 279 EENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRP 358 (478)
Q Consensus 279 ~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~ 358 (478)
+..++.+|+.|++..|+|+|+||||-|++.++.. +...-..++.+|+..|+|+...+.|+||++||+|+.+||+++||
T Consensus 349 ERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk--qEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRP 426 (1080)
T KOG0732|consen 349 ERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK--QEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRP 426 (1080)
T ss_pred HHHHHHHHHHHhccCceEEeccccccccccccch--HHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCC
Confidence 9999999999999999999999999999988543 22333578999999999999999999999999999999999999
Q ss_pred CCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC-----
Q psy450 359 GRLDKSLYVGLYEDRISQLGVLKAVVRKFKLS-DDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQ----- 432 (478)
Q Consensus 359 ~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~----- 432 (478)
|||++.++|++ |+.+.|.+|+..+.++..-. ....+..++..+ .||.|+||+++|.+|+..++++..-+.-.
T Consensus 427 grfdref~f~l-p~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t-~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl 504 (1080)
T KOG0732|consen 427 GRFDREFYFPL-PDVDARAKILDIHTRKWEPPISRELLLWLAEET-SGYGGADLKALCTEAALIALRRSFPQIYSSSDKL 504 (1080)
T ss_pred cccceeEeeeC-CchHHHHHHHHHhccCCCCCCCHHHHHHHHHhc-cccchHHHHHHHHHHhhhhhccccCeeecccccc
Confidence 99999999999 68999999999887765522 223366777776 89999999999999999999996532211
Q ss_pred -CCCCCccccHHHHHhchhccCCCcccccccccc
Q psy450 433 -VKSAPVIVTMDDFLGACSLATAPDKFSQSVAPD 465 (478)
Q Consensus 433 -~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~ 465 (478)
.......|+..||..| +.++-|+...+
T Consensus 505 ~~d~~~ikV~~~~f~~A------~~~i~ps~~R~ 532 (1080)
T KOG0732|consen 505 LIDVALIKVEVRDFVEA------MSRITPSSRRS 532 (1080)
T ss_pred cccchhhhhhhHhhhhh------hhccCCCCCcc
Confidence 1223344999999999 88888887654
No 38
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=2.1e-30 Score=281.43 Aligned_cols=252 Identities=41% Similarity=0.693 Sum_probs=219.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhh------hCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhh
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNR------TSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK 273 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~------~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~ 273 (478)
.+..+|++++|++++++.+.+.+..+.. ..+.. ++++||+||||||||++++++|++++.+++.++++++.+.
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 5788999999999999999999887632 33444 7899999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCc
Q psy450 274 YIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDP 353 (478)
Q Consensus 274 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~ 353 (478)
+.|.++..++.+|..+....|+||||||+|.+.++++.. ......+++++|+..++++....+++||++||+++.+|+
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~--~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV--TGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDP 329 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC--cchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCH
Confidence 999999999999999999999999999999999876432 233446788999999999887888999999999999999
Q ss_pred cccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC-
Q psy450 354 AILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQ- 432 (478)
Q Consensus 354 ~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~- 432 (478)
+++++|||+..+++++ |+.++|.+|++.+.+...+..++++..++..+ .||+|+|+..+|+.|+..++++.......
T Consensus 330 al~r~gRfd~~i~i~~-P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t-~G~~gadl~~l~~~a~~~al~r~~~~~~~~ 407 (733)
T TIGR01243 330 ALRRPGRFDREIVIRV-PDKRARKEILKVHTRNMPLAEDVDLDKLAEVT-HGFVGADLAALAKEAAMAALRRFIREGKIN 407 (733)
T ss_pred HHhCchhccEEEEeCC-cCHHHHHHHHHHHhcCCCCccccCHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 9999999999999998 69999999999999998888888999999987 89999999999999999999997652211
Q ss_pred --------CCCCCccccHHHHHhchhccCCCccccccc
Q psy450 433 --------VKSAPVIVTMDDFLGACSLATAPDKFSQSV 462 (478)
Q Consensus 433 --------~~~~~~~it~~d~~~A~~~~~~l~~~~ps~ 462 (478)
.......++.+||..| ++.++|+.
T Consensus 408 ~~~~~i~~~~~~~~~v~~~df~~A------l~~v~ps~ 439 (733)
T TIGR01243 408 FEAEEIPAEVLKELKVTMKDFMEA------LKMVEPSA 439 (733)
T ss_pred cccccccchhcccccccHHHHHHH------Hhhccccc
Confidence 0123456899999999 77777764
No 39
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-30 Score=244.52 Aligned_cols=155 Identities=16% Similarity=0.264 Sum_probs=143.2
Q ss_pred HHHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhh
Q psy450 17 SHLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQ 83 (478)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~ 83 (478)
+.|+.+|+|+... -+|++|. .|++++||||||||||+|+++| ..-+||++||+
T Consensus 219 SElVqKYiGEGaR-lVRelF~-lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG------------ 284 (406)
T COG1222 219 SELVQKYIGEGAR-LVRELFE-LAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG------------ 284 (406)
T ss_pred HHHHHHHhccchH-HHHHHHH-HHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC------------
Confidence 4578888888776 9999999 9999999999999999999998 46688999995
Q ss_pred ccCCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHH
Q psy450 84 CKQQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDL 154 (478)
Q Consensus 84 ~~~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di 154 (478)
++..++|-||+ |||||+| |||+.|+||+||.+.|.+||+.|++++ .+..+++| +.||+.|+|+|||||
T Consensus 285 FD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM--~l~~dvd~-e~la~~~~g~sGAdl 361 (406)
T COG1222 285 FDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM--NLADDVDL-ELLARLTEGFSGADL 361 (406)
T ss_pred CCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc--cCccCcCH-HHHHHhcCCCchHHH
Confidence 58889999999 9999999 999999999999999999999999999 88999999 999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhh
Q psy450 155 TCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQSR 191 (478)
Q Consensus 155 ~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~~ 191 (478)
+++|.+|.+.|+++ ....++++||..|.+.+...
T Consensus 362 kaictEAGm~AiR~---~R~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 362 KAICTEAGMFAIRE---RRDEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred HHHHHHHhHHHHHh---ccCeecHHHHHHHHHHHHhc
Confidence 99999999999987 67889999999999988653
No 40
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.96 E-value=7.1e-27 Score=253.11 Aligned_cols=384 Identities=16% Similarity=0.194 Sum_probs=255.5
Q ss_pred HHH--HhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe-
Q psy450 18 HLL--TNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL- 94 (478)
Q Consensus 18 ~~~--~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via- 94 (478)
.++ ++|.++..+ .++.+|+ .+++..|+||||||+|.|++.+.-.. ..+|... ...+...++.+.+||
T Consensus 248 ~l~a~~~~~g~~e~-~l~~i~~-~~~~~~~~ILfiDEih~l~~~g~~~~--~~~~~~~------~L~~~l~~g~i~~Iga 317 (731)
T TIGR02639 248 SLLAGTKYRGDFEE-RLKAVVS-EIEKEPNAILFIDEIHTIVGAGATSG--GSMDASN------LLKPALSSGKLRCIGS 317 (731)
T ss_pred HHhhhccccchHHH-HHHHHHH-HHhccCCeEEEEecHHHHhccCCCCC--ccHHHHH------HHHHHHhCCCeEEEEe
Confidence 455 355555555 9999999 88888899999999999987541000 0111100 011223467799999
Q ss_pred -----------eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCC--CCCCChhHHHHHHHhcCCCCHHH-----HHH
Q psy450 95 -----------IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGG--DYGFDASLVEYLSSVTSGFERHD-----LTC 156 (478)
Q Consensus 95 -----------ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~--~~~~~~~~i~~la~~t~G~s~~d-----i~~ 156 (478)
.|+|++|||. .|+|+.|+.+++.+||+.....+.. ....+.+.+..++..+..|-+.. --.
T Consensus 318 Tt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~ 396 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAID 396 (731)
T ss_pred cCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHH
Confidence 6999999996 7999999999999999988765432 22345555688888887775443 355
Q ss_pred HHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHhhhhcccCCCC------CCCCCCCcccccCcHHHHHHHHHHHHhhhhh
Q psy450 157 LVRLSVKNKMLKQ-GINKRDLQKEDFQQIYDDLQSRYSDQLDA------PSVPNVSWEDIGGLSKLKAEILSTFRGVNRT 229 (478)
Q Consensus 157 l~~~a~~~a~~~~-~~~~~~it~~d~~~a~~~~~~~~~~~~~~------~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~ 229 (478)
++++|+.....+. ......++.+|+..++..+.+........ ......-...++|++.+++.+...+......
T Consensus 397 lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g 476 (731)
T TIGR02639 397 VIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAG 476 (731)
T ss_pred HHHHhhhhhhcCcccccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcC
Confidence 6677665443221 12345699999999999886432211110 0111222456899999999998887765322
Q ss_pred C---CCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhh-----hhcchHH-----HHHHHHHHhHhCCCeE
Q psy450 230 S---GLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK-----YIGQSEE-----NIRNVFLKARSAAPCV 296 (478)
Q Consensus 230 ~---~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~-----~~g~~~~-----~~~~~~~~a~~~~p~i 296 (478)
. +.+..++||+||||||||++|+++|+.++.+++.++++++... ..|.... ....+....+....+|
T Consensus 477 ~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~V 556 (731)
T TIGR02639 477 LGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCV 556 (731)
T ss_pred CCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeE
Confidence 1 2223458999999999999999999999999999999886532 1221110 1112333445566789
Q ss_pred EEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC---------CCCCeEEEEEcCCCC------------------
Q psy450 297 VFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH---------TSQDVFILGATNRVD------------------ 349 (478)
Q Consensus 297 l~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~vI~ttn~~~------------------ 349 (478)
|+|||+|++.+ .+.+.|+..++... +-.+.++|+|||...
T Consensus 557 vllDEieka~~-------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~ 623 (731)
T TIGR02639 557 LLLDEIEKAHP-------------DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESK 623 (731)
T ss_pred EEEechhhcCH-------------HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHH
Confidence 99999999873 46677777776431 124688999998631
Q ss_pred -------CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcC-------CCCC---CCCHHHHHHh-cCCCCCHHHH
Q psy450 350 -------LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKF-------KLSD---DVSLDSLVHH-FPSQMSGADI 411 (478)
Q Consensus 350 -------~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~-------~~~~---~~~~~~la~~-~~~~~sg~di 411 (478)
.+.|.++. |++.++.|.. .+.++..+|++..++++ ++.- +.-.+.|+.. +...|.++.|
T Consensus 624 ~~~~~~~~f~pef~~--Rid~Vi~F~p-Ls~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l 700 (731)
T TIGR02639 624 SDKAIKKLFSPEFRN--RLDAIIHFNP-LSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPL 700 (731)
T ss_pred HHHHHHhhcChHHHh--cCCeEEEcCC-CCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHH
Confidence 24667776 9999999985 79999999998776431 1111 1225556664 3345667888
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy450 412 YSICSNAWTRAIRRIIT 428 (478)
Q Consensus 412 ~~l~~~a~~~a~~r~~~ 428 (478)
+.+++.-...++.+.+-
T Consensus 701 ~r~i~~~~~~~l~~~~l 717 (731)
T TIGR02639 701 ARVIQEEIKKPLSDEIL 717 (731)
T ss_pred HHHHHHHhHHHHHHHHH
Confidence 88888888777776653
No 41
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.95 E-value=4.7e-26 Score=243.55 Aligned_cols=380 Identities=14% Similarity=0.151 Sum_probs=251.7
Q ss_pred hhccCccchhhhhHHHHhhhhcCCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe-------
Q psy450 22 NYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL------- 94 (478)
Q Consensus 22 ~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via------- 94 (478)
+|.++..+ .++.+|+ .+++..++||||||+|.|++.+.-.. .++|..+ ...+...++.+.|||
T Consensus 258 ~~~Ge~e~-rl~~l~~-~l~~~~~~ILfIDEIh~L~g~g~~~~--g~~d~~n------lLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 258 KYRGDFEK-RFKALLK-QLEQDTNSILFIDEIHTIIGAGAASG--GQVDAAN------LIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred chhhhHHH-HHHHHHH-HHHhcCCCEEEeccHHHHhccCCCCC--cHHHHHH------HHHHHHhCCCeEEEecCChHHH
Confidence 44444444 8999998 88888899999999999987652100 1122100 012345577899999
Q ss_pred -----eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCC--ChhHHHHHHHhc-----CCCCHHHHHHHHHHHH
Q psy450 95 -----IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGF--DASLVEYLSSVT-----SGFERHDLTCLVRLSV 162 (478)
Q Consensus 95 -----ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~--~~~~i~~la~~t-----~G~s~~di~~l~~~a~ 162 (478)
.|||+.|||+ .|+|+.|+.+++.+||+.+...++..+.. +.+.+...+..+ +.+.+.....++++|+
T Consensus 328 ~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~ 406 (758)
T PRK11034 328 SNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAG 406 (758)
T ss_pred HHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHH
Confidence 6999999995 79999999999999999988776433332 333334444433 3456667888899888
Q ss_pred HHHHHhh-cCCCCCCCHHHHHHHHHHhhhhcccCCCCCC------CCCCCcccccCcHHHHHHHHHHHHhhhhhC---CC
Q psy450 163 KNKMLKQ-GINKRDLQKEDFQQIYDDLQSRYSDQLDAPS------VPNVSWEDIGGLSKLKAEILSTFRGVNRTS---GL 232 (478)
Q Consensus 163 ~~a~~~~-~~~~~~it~~d~~~a~~~~~~~~~~~~~~~~------~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~---~~ 232 (478)
....... ......++.+|+...+..+.+.......... ....--..++|++++++.+...+....... +.
T Consensus 407 a~~~~~~~~~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~k 486 (758)
T PRK11034 407 ARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHK 486 (758)
T ss_pred HhhccCcccccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCC
Confidence 7553210 1123468889999998887654332221100 111122458999999999999887664322 22
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh-----hhhcchHHH----HHHHH-HHhHhCCCeEEEEcCC
Q psy450 233 KRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN-----KYIGQSEEN----IRNVF-LKARSAAPCVVFFDEL 302 (478)
Q Consensus 233 ~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~-----~~~g~~~~~----~~~~~-~~a~~~~p~il~iDei 302 (478)
+..++||+||||||||++|+++|+.++.+++.++++++.. ...|..... ....+ ...+....+||+|||+
T Consensus 487 p~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEi 566 (758)
T PRK11034 487 PVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEI 566 (758)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccH
Confidence 2346999999999999999999999999999999987642 223321111 11122 2334455689999999
Q ss_pred ccccCCCCCCCCCchhHHHHHHHHHHhhcCCC---------CCCCeEEEEEcCCC-------------------------
Q psy450 303 DSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH---------TSQDVFILGATNRV------------------------- 348 (478)
Q Consensus 303 d~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~vI~ttn~~------------------------- 348 (478)
|++.+ .+.+.|+..++.-. +-.++++|+|||.-
T Consensus 567 eka~~-------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~ 633 (758)
T PRK11034 567 EKAHP-------------DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIK 633 (758)
T ss_pred hhhhH-------------HHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHH
Confidence 99973 46777777776321 12468899999932
Q ss_pred CCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhc-------CCCCCCCC---HHHHHHhc-CCCCCHHHHHHHHHH
Q psy450 349 DLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRK-------FKLSDDVS---LDSLVHHF-PSQMSGADIYSICSN 417 (478)
Q Consensus 349 ~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~-------~~~~~~~~---~~~la~~~-~~~~sg~di~~l~~~ 417 (478)
..+.|.++. |+|..+.|+. .+.++...|+...+.. .++.-.++ ++.|+... ...|-.+.++.+++.
T Consensus 634 ~~f~pefl~--Rid~ii~f~~-L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~ 710 (758)
T PRK11034 634 KIFTPEFRN--RLDNIIWFDH-LSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQD 710 (758)
T ss_pred HhcCHHHHc--cCCEEEEcCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHH
Confidence 125577777 9999999985 7898888888765532 23322222 55566533 223556788888888
Q ss_pred HHHHHHHHHHh
Q psy450 418 AWTRAIRRIIT 428 (478)
Q Consensus 418 a~~~a~~r~~~ 428 (478)
-....+.+.+-
T Consensus 711 ~l~~~la~~il 721 (758)
T PRK11034 711 NLKKPLANELL 721 (758)
T ss_pred HHHHHHHHHHH
Confidence 88887777654
No 42
>KOG0736|consensus
Probab=99.95 E-value=1.7e-27 Score=242.17 Aligned_cols=173 Identities=14% Similarity=0.152 Sum_probs=155.4
Q ss_pred hhhHHHHHhhHHHHHHHHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch------------hhHhhhccc
Q psy450 2 EYIESFHNRINEDILSHLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK------------YVYFKLCSF 69 (478)
Q Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r------------~~~~~l~~~ 69 (478)
|.+++|+++++||+|++|++.+ +.|+|+||. .||..+||||||||+|+++++| +|+|+|.+|
T Consensus 728 EcsL~FlSVKGPELLNMYVGqS-----E~NVR~VFe-rAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAEL 801 (953)
T KOG0736|consen 728 ECSLNFLSVKGPELLNMYVGQS-----EENVREVFE-RARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAEL 801 (953)
T ss_pred hceeeEEeecCHHHHHHHhcch-----HHHHHHHHH-HhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHh
Confidence 7899999999999999988766 669999999 9999999999999999999987 899999999
Q ss_pred cccccccccchhhhccCCCcEEEEe-------eCHhHHh--ccccEEEeCCCC-HHHHHHHHHHHHhhcCCCCCCChhHH
Q psy450 70 DSVNVKSNETKDQQCKQQHKKKLVL-------IRKQIQK--LFLKTINVLPLT-EPERRLLIQYQLDCLGGDYGFDASLV 139 (478)
Q Consensus 70 d~~~~~~~~~~~~~~~~~~~v~via-------ld~al~r--Rf~~~i~~~~P~-~~~r~~il~~~~~~~~~~~~~~~~~i 139 (478)
|++.. +....|+||| ||||++| |||+-++++.++ .+.+..+|+..++++ .++.++++
T Consensus 802 Dgls~----------~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkF--kLdedVdL- 868 (953)
T KOG0736|consen 802 DGLSD----------SSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKF--KLDEDVDL- 868 (953)
T ss_pred hcccC----------CCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHc--cCCCCcCH-
Confidence 98753 3577899999 9999999 999999999995 788899999999999 88999998
Q ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHHHhh--------------cCCCCCCCHHHHHHHHHHhhhhcc
Q psy450 140 EYLSSVTS-GFERHDLTCLVRLSVKNKMLKQ--------------GINKRDLQKEDFQQIYDDLQSRYS 193 (478)
Q Consensus 140 ~~la~~t~-G~s~~di~~l~~~a~~~a~~~~--------------~~~~~~it~~d~~~a~~~~~~~~~ 193 (478)
.++|+.++ .|||||+..+|..|+..|+.+. ......++++||.++.++++|+.+
T Consensus 869 ~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS 937 (953)
T KOG0736|consen 869 VEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVS 937 (953)
T ss_pred HHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCccc
Confidence 99999876 8999999999999999998651 123567999999999999988754
No 43
>KOG0738|consensus
Probab=99.94 E-value=6.6e-27 Score=221.64 Aligned_cols=171 Identities=19% Similarity=0.248 Sum_probs=143.4
Q ss_pred HHHHhhHHHHHHHHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch-----------hhHhhhcccccccc
Q psy450 6 SFHNRINEDILSHLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-----------YVYFKLCSFDSVNV 74 (478)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-----------~~~~~l~~~d~~~~ 74 (478)
-||||-- +.|.|+|=|+.. +-||-+|+ .|+.++|++|||||||+||++| +.+.||.+||++..
T Consensus 272 TFFNVSs----stltSKwRGeSE-KlvRlLFe-mARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~ 345 (491)
T KOG0738|consen 272 TFFNVSS----STLTSKWRGESE-KLVRLLFE-MARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQG 345 (491)
T ss_pred eEEEech----hhhhhhhccchH-HHHHHHHH-HHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccc
Confidence 3666543 234555555554 49999999 9999999999999999999987 89999999998764
Q ss_pred ccccchhhhccCCCcEEEEe-------eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcC
Q psy450 75 KSNETKDQQCKQQHKKKLVL-------IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTS 147 (478)
Q Consensus 75 ~~~~~~~~~~~~~~~v~via-------ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~ 147 (478)
.. +...-|.|+| ||+|++|||.++|+||+||.++|..+|+..++.. ++..++++ +.|++.++
T Consensus 346 t~--------e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~--~~~~~~~~-~~lae~~e 414 (491)
T KOG0738|consen 346 TL--------ENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSV--ELDDPVNL-EDLAERSE 414 (491)
T ss_pred cc--------ccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccc--cCCCCccH-HHHHHHhc
Confidence 32 2234588888 9999999999999999999999999999999887 67788887 99999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhh--------------cCCCCCCCHHHHHHHHHHhhhhcc
Q psy450 148 GFERHDLTCLVRLSVKNKMLKQ--------------GINKRDLQKEDFQQIYDDLQSRYS 193 (478)
Q Consensus 148 G~s~~di~~l~~~a~~~a~~~~--------------~~~~~~it~~d~~~a~~~~~~~~~ 193 (478)
||||+||.++|++|.+.++++. .....+++..||+.|+..++|+..
T Consensus 415 GySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 415 GYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 9999999999999999998751 112367999999999999987754
No 44
>KOG0732|consensus
Probab=99.94 E-value=3.3e-26 Score=243.35 Aligned_cols=284 Identities=18% Similarity=0.257 Sum_probs=220.1
Q ss_pred HHHHhhHHHHHHHHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch----------hhHhhhccccccccc
Q psy450 6 SFHNRINEDILSHLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK----------YVYFKLCSFDSVNVK 75 (478)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r----------~~~~~l~~~d~~~~~ 75 (478)
+|+-+.+.|.| ++|.+++.. ++|.+|+ .|++.+|+|+|+||||.+++.| +|.++|..||++
T Consensus 331 sffmrkgaD~l----skwvgEaER-qlrllFe-eA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGl--- 401 (1080)
T KOG0732|consen 331 SFFMRKGADCL----SKWVGEAER-QLRLLFE-EAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGL--- 401 (1080)
T ss_pred chhhhcCchhh----ccccCcHHH-HHHHHHH-HHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCC---
Confidence 46666666665 556666666 9999999 9999999999999999999988 899999999954
Q ss_pred cccchhhhccCCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhc
Q psy450 76 SNETKDQQCKQQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVT 146 (478)
Q Consensus 76 ~~~~~~~~~~~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t 146 (478)
+.+++|+||| +|||++| |||+.++|++|+.+.|.+|+..+.+++. ......++..+|+.|
T Consensus 402 ---------dsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~--~~i~~~l~~~la~~t 470 (1080)
T KOG0732|consen 402 ---------DSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWE--PPISRELLLWLAEET 470 (1080)
T ss_pred ---------CCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCC--CCCCHHHHHHHHHhc
Confidence 7899999999 9999999 9999999999999999999999999984 445566679999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhh-------------cCCCCCCCHHHHHHHHHHhhhhcccCCCCCCCCCCCccc-ccCc
Q psy450 147 SGFERHDLTCLVRLSVKNKMLKQ-------------GINKRDLQKEDFQQIYDDLQSRYSDQLDAPSVPNVSWED-IGGL 212 (478)
Q Consensus 147 ~G~s~~di~~l~~~a~~~a~~~~-------------~~~~~~it~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~-i~g~ 212 (478)
.||.|+|++.+|.+|+..++.+. ......+...||..|+..+.|+..+....++.|.-..-- +.+.
T Consensus 471 ~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~ 550 (1080)
T KOG0732|consen 471 SGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPF 550 (1080)
T ss_pred cccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccch
Confidence 99999999999999999997541 123455888999999999998877765555544321111 2212
Q ss_pred HHHHHHHH-------------HHHHhhhhhC----CC---CCceEEEeCCCCChHHHHHHHHHHHh-CCcEEEEechhhh
Q psy450 213 SKLKAEIL-------------STFRGVNRTS----GL---KRSGLLLYGPPGTGKTLIAKAVATEC-RMNFLAVKGPELL 271 (478)
Q Consensus 213 ~~~k~~l~-------------~~~~~~~~~~----~~---~~~~iLl~Gp~GtGKT~la~~la~~~-~~~~~~v~~~~l~ 271 (478)
......++ +...+..... .. ....+++.|..|.|-+++..+|-+.+ +.++.....+.+.
T Consensus 551 ~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll 630 (1080)
T KOG0732|consen 551 QDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLL 630 (1080)
T ss_pred HHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHH
Confidence 22222221 1111111111 11 13458899999999999999998877 6677666767776
Q ss_pred hhh-hcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCC
Q psy450 272 NKY-IGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRR 309 (478)
Q Consensus 272 ~~~-~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~ 309 (478)
... .+..+..+..+|..++...||||||-++|.+....
T Consensus 631 ~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~ 669 (1080)
T KOG0732|consen 631 SDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVI 669 (1080)
T ss_pred hccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcC
Confidence 665 66678889999999999999999999999988543
No 45
>KOG0734|consensus
Probab=99.93 E-value=2.5e-26 Score=225.09 Aligned_cols=150 Identities=16% Similarity=0.182 Sum_probs=138.8
Q ss_pred HhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch----------hhHhhhccccccccccccchhhhccCCCcE
Q psy450 21 TNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK----------YVYFKLCSFDSVNVKSNETKDQQCKQQHKK 90 (478)
Q Consensus 21 ~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r----------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v 90 (478)
...|-+..++.+|++|+ .||+.+||||||||||+++++| .+||+|.+||++ ..+.+|
T Consensus 374 dEm~VGvGArRVRdLF~-aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF------------~qNeGi 440 (752)
T KOG0734|consen 374 DEMFVGVGARRVRDLFA-AAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGF------------KQNEGI 440 (752)
T ss_pred hhhhhcccHHHHHHHHH-HHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCc------------CcCCce
Confidence 34566777889999999 9999999999999999999999 589999999954 778899
Q ss_pred EEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHH
Q psy450 91 KLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLS 161 (478)
Q Consensus 91 ~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a 161 (478)
+||| +|+||.| |||++|.+|.||...|.+||+.|+++. .++.++|. +-||+=|.||+|+|++++++.|
T Consensus 441 IvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki--~~~~~VD~-~iiARGT~GFsGAdLaNlVNqA 517 (752)
T KOG0734|consen 441 IVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI--PLDEDVDP-KIIARGTPGFSGADLANLVNQA 517 (752)
T ss_pred EEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcC--CcccCCCH-hHhccCCCCCchHHHHHHHHHH
Confidence 9999 9999999 999999999999999999999999998 78889998 9999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHhh
Q psy450 162 VKNKMLKQGINKRDLQKEDFQQIYDDLQ 189 (478)
Q Consensus 162 ~~~a~~~~~~~~~~it~~d~~~a~~~~~ 189 (478)
+.++..+ +...+++.+++.|..++-
T Consensus 518 AlkAa~d---ga~~VtM~~LE~akDrIl 542 (752)
T KOG0734|consen 518 ALKAAVD---GAEMVTMKHLEFAKDRIL 542 (752)
T ss_pred HHHHHhc---CcccccHHHHhhhhhhee
Confidence 9999755 788999999999998875
No 46
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.92 E-value=1.5e-22 Score=220.79 Aligned_cols=370 Identities=16% Similarity=0.159 Sum_probs=227.8
Q ss_pred chhhhhHHHHhhhh-cCCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe------------e
Q psy450 29 YHHLNDIVKINLKK-YNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL------------I 95 (478)
Q Consensus 29 ~~~~~~if~~~a~~-~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via------------l 95 (478)
+..++.+|+ .++. ..++||||||++.+++.+.-. ..+|.. ....+...++.+.+|| +
T Consensus 265 e~~lk~ii~-e~~~~~~~~ILfIDEih~l~~~g~~~---~~~d~~------n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~ 334 (852)
T TIGR03345 265 ENRLKSVID-EVKASPQPIILFIDEAHTLIGAGGQA---GQGDAA------NLLKPALARGELRTIAATTWAEYKKYFEK 334 (852)
T ss_pred HHHHHHHHH-HHHhcCCCeEEEEeChHHhccCCCcc---ccccHH------HHhhHHhhCCCeEEEEecCHHHHhhhhhc
Confidence 348999998 7765 468999999999999765210 123310 0112345677899999 7
Q ss_pred CHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCC--CCCCChhHHHHHHHhcCCCCHH-----HHHHHHHHHHHHHHHh
Q psy450 96 RKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGG--DYGFDASLVEYLSSVTSGFERH-----DLTCLVRLSVKNKMLK 168 (478)
Q Consensus 96 d~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~--~~~~~~~~i~~la~~t~G~s~~-----di~~l~~~a~~~a~~~ 168 (478)
|||++||| ..|.|+.|+.+++.+||+.+...++. .+..+.+.+..++..+.+|.+. .--.++++|+.....+
T Consensus 335 d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~ 413 (852)
T TIGR03345 335 DPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALS 413 (852)
T ss_pred cHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHh
Confidence 99999999 58999999999999998877766532 2334455557777777766432 2233344433322110
Q ss_pred hcC-----------------------------------------------------------------------------
Q psy450 169 QGI----------------------------------------------------------------------------- 171 (478)
Q Consensus 169 ~~~----------------------------------------------------------------------------- 171 (478)
...
T Consensus 414 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (852)
T TIGR03345 414 QNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKELVEAILALRAELEAD 493 (852)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 000
Q ss_pred -------------------------------CCCCCCHHHHHHHHHHhhhhcccCCCCCC------CCCCCcccccCcHH
Q psy450 172 -------------------------------NKRDLQKEDFQQIYDDLQSRYSDQLDAPS------VPNVSWEDIGGLSK 214 (478)
Q Consensus 172 -------------------------------~~~~it~~d~~~a~~~~~~~~~~~~~~~~------~~~~~~~~i~g~~~ 214 (478)
....++.+|+...+..+.+.+........ ....--..++|++.
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~ 573 (852)
T TIGR03345 494 ADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDH 573 (852)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHH
Confidence 00112222222222222221111000000 00111246899999
Q ss_pred HHHHHHHHHHhhhhhCC--CCCc-eEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh------------hhc
Q psy450 215 LKAEILSTFRGVNRTSG--LKRS-GLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK------------YIG 276 (478)
Q Consensus 215 ~k~~l~~~~~~~~~~~~--~~~~-~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~------------~~g 276 (478)
+.+.+.+.+........ .+|. .+||+||||||||++|+++|+.+ ...++.++++++... |+|
T Consensus 574 Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg 653 (852)
T TIGR03345 574 ALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVG 653 (852)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCccc
Confidence 99999888877643222 2254 48999999999999999999988 457899998877533 333
Q ss_pred chHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC---------CCCCeEEEEEcCC
Q psy450 277 QSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH---------TSQDVFILGATNR 347 (478)
Q Consensus 277 ~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~vI~ttn~ 347 (478)
..+.. .+....+...++||+|||+|.+.+ .+.+.|+..++.-. +-.+.+||+|||.
T Consensus 654 ~~~~g--~L~~~v~~~p~svvllDEieka~~-------------~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 654 YGEGG--VLTEAVRRKPYSVVLLDEVEKAHP-------------DVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred ccccc--hHHHHHHhCCCcEEEEechhhcCH-------------HHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 32211 123344557779999999998763 45666666665322 1246889999985
Q ss_pred CC-----------------------------CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcC--------CCC
Q psy450 348 VD-----------------------------LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKF--------KLS 390 (478)
Q Consensus 348 ~~-----------------------------~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~--------~~~ 390 (478)
.. .+.|++++ |++ .+.|. |.+.++..+|+...+..+ ++.
T Consensus 719 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~-pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~ 794 (852)
T TIGR03345 719 GSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYL-PLDDDVLAAIVRLKLDRIARRLKENHGAE 794 (852)
T ss_pred chHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeC-CCCHHHHHHHHHHHHHHHHHHHHHhcCce
Confidence 21 14566777 997 66676 579999999997665431 221
Q ss_pred C---CCCHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHh
Q psy450 391 D---DVSLDSLVHHFPS-QMSGADIYSICSNAWTRAIRRIIT 428 (478)
Q Consensus 391 ~---~~~~~~la~~~~~-~~sg~di~~l~~~a~~~a~~r~~~ 428 (478)
- +.-.+.|+....+ .|-++.+..+++.-...++.+.+-
T Consensus 795 l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~l 836 (852)
T TIGR03345 795 LVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQIL 836 (852)
T ss_pred EEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 1 1125566665422 345788888888877777777653
No 47
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.91 E-value=2.4e-24 Score=194.16 Aligned_cols=153 Identities=16% Similarity=0.285 Sum_probs=133.8
Q ss_pred HHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch-----------hhHhhhccccccccccccchhhhccC
Q psy450 18 HLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-----------YVYFKLCSFDSVNVKSNETKDQQCKQ 86 (478)
Q Consensus 18 ~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-----------~~~~~l~~~d~~~~~~~~~~~~~~~~ 86 (478)
.|++.|-|+... +++.+|+ .|++.+|||+||||+|+|+-.| +||.||++||++ ..
T Consensus 186 ~liGehVGdgar-~Ihely~-rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi------------~e 251 (368)
T COG1223 186 ELIGEHVGDGAR-RIHELYE-RARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGI------------KE 251 (368)
T ss_pred HHHHHHhhhHHH-HHHHHHH-HHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCc------------cc
Confidence 467778777776 9999999 9999999999999999999887 799999999965 56
Q ss_pred CCcEEEEe-------eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHH-HH
Q psy450 87 QHKKKLVL-------IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTC-LV 158 (478)
Q Consensus 87 ~~~v~via-------ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~-l~ 158 (478)
+.+|+.|| +|||+++||...|+|.+|+.+||.+|++.|.+++ ++..+.++ +.++++|.||||.||.. ++
T Consensus 252 neGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~--Plpv~~~~-~~~~~~t~g~SgRdikekvl 328 (368)
T COG1223 252 NEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF--PLPVDADL-RYLAAKTKGMSGRDIKEKVL 328 (368)
T ss_pred CCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC--CCccccCH-HHHHHHhCCCCchhHHHHHH
Confidence 77888888 9999999999999999999999999999999999 55666776 99999999999999976 45
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhh
Q psy450 159 RLSVKNKMLKQGINKRDLQKEDFQQIYDDLQS 190 (478)
Q Consensus 159 ~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~ 190 (478)
..|..+++.+ +...++.+|++.|++...+
T Consensus 329 K~aLh~Ai~e---d~e~v~~edie~al~k~r~ 357 (368)
T COG1223 329 KTALHRAIAE---DREKVEREDIEKALKKERK 357 (368)
T ss_pred HHHHHHHHHh---chhhhhHHHHHHHHHhhcc
Confidence 5566666655 6788999999999997543
No 48
>KOG0735|consensus
Probab=99.91 E-value=8.1e-25 Score=220.86 Aligned_cols=145 Identities=19% Similarity=0.204 Sum_probs=129.9
Q ss_pred hhHHHHHhhHHHHHHHHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch----------hhHhhhcccccc
Q psy450 3 YIESFHNRINEDILSHLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK----------YVYFKLCSFDSV 72 (478)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r----------~~~~~l~~~d~~ 72 (478)
...+|-|+++||+|+.|++.+ +.++|++|. .|+..+||||||||+|+|+++| +||++|++||+.
T Consensus 725 ~~~~fisvKGPElL~KyIGaS-----Eq~vR~lF~-rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~ 798 (952)
T KOG0735|consen 725 SNLRFISVKGPELLSKYIGAS-----EQNVRDLFE-RAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGA 798 (952)
T ss_pred CCeeEEEecCHHHHHHHhccc-----HHHHHHHHH-HhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccc
Confidence 346789999999876555444 459999999 9999999999999999999998 899999999964
Q ss_pred ccccccchhhhccCCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHH
Q psy450 73 NVKSNETKDQQCKQQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLS 143 (478)
Q Consensus 73 ~~~~~~~~~~~~~~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la 143 (478)
+.-.+|.|+| ||||++| |+|+.++.+.|++.+|++|++.+.+.. ....++|+ +.+|
T Consensus 799 ------------Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~--~~~~~vdl-~~~a 863 (952)
T KOG0735|consen 799 ------------EGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL--LKDTDVDL-ECLA 863 (952)
T ss_pred ------------cccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc--CCccccch-HHHh
Confidence 4566799999 9999999 999999999999999999999999877 67788998 9999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHh
Q psy450 144 SVTSGFERHDLTCLVRLSVKNKMLK 168 (478)
Q Consensus 144 ~~t~G~s~~di~~l~~~a~~~a~~~ 168 (478)
..|+||||+|+..++-.|...+.++
T Consensus 864 ~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 864 QKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred hhcCCCchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999888754
No 49
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.91 E-value=3.2e-22 Score=219.32 Aligned_cols=377 Identities=15% Similarity=0.170 Sum_probs=243.4
Q ss_pred hhccCccchhhhhHHHHhhhhcCCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe-------
Q psy450 22 NYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL------- 94 (478)
Q Consensus 22 ~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via------- 94 (478)
+|.++. +..++.+|+ .++...++||||||+|.|++.+... ..+|.. ....+...++.+.+||
T Consensus 251 ~~~ge~-e~rl~~i~~-~~~~~~~~ILfiDEih~l~~~g~~~---g~~~~a------~lLkp~l~rg~l~~IgaTt~~ey 319 (821)
T CHL00095 251 KYRGEF-EERLKRIFD-EIQENNNIILVIDEVHTLIGAGAAE---GAIDAA------NILKPALARGELQCIGATTLDEY 319 (821)
T ss_pred CCccHH-HHHHHHHHH-HHHhcCCeEEEEecHHHHhcCCCCC---CcccHH------HHhHHHHhCCCcEEEEeCCHHHH
Confidence 444444 448999999 8888889999999999999765211 112210 0112335577889999
Q ss_pred -----eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCC--CCCCChhHHHHHHHhcCCCCHH-----HHHHHHHHHH
Q psy450 95 -----IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGG--DYGFDASLVEYLSSVTSGFERH-----DLTCLVRLSV 162 (478)
Q Consensus 95 -----ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~--~~~~~~~~i~~la~~t~G~s~~-----di~~l~~~a~ 162 (478)
.||++.|||. .|.++.|+.++...|++.....+.. .+..+.+.+..++..+.+|.+. .--.++++|+
T Consensus 320 ~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~ 398 (821)
T CHL00095 320 RKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAG 398 (821)
T ss_pred HHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHH
Confidence 6999999995 6899999999999999876644321 2234555668888888777543 2334455544
Q ss_pred HHHHHhh------------------------------------------------------------cCCCCCCCHHHHH
Q psy450 163 KNKMLKQ------------------------------------------------------------GINKRDLQKEDFQ 182 (478)
Q Consensus 163 ~~a~~~~------------------------------------------------------------~~~~~~it~~d~~ 182 (478)
....... ......++.+|+.
T Consensus 399 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~ 478 (821)
T CHL00095 399 SRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLEVPVVTEEDIA 478 (821)
T ss_pred HHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHH
Confidence 4321110 0011457777777
Q ss_pred HHHHHhhhhcccCCCCCC------CCCCCcccccCcHHHHHHHHHHHHhhhhh---CCCCCceEEEeCCCCChHHHHHHH
Q psy450 183 QIYDDLQSRYSDQLDAPS------VPNVSWEDIGGLSKLKAEILSTFRGVNRT---SGLKRSGLLLYGPPGTGKTLIAKA 253 (478)
Q Consensus 183 ~a~~~~~~~~~~~~~~~~------~~~~~~~~i~g~~~~k~~l~~~~~~~~~~---~~~~~~~iLl~Gp~GtGKT~la~~ 253 (478)
..+..+.+.+........ ....--+.++|++.+++.+...+...... +..+..++||+||+|||||++|++
T Consensus 479 ~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~ 558 (821)
T CHL00095 479 EIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKA 558 (821)
T ss_pred HHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHH
Confidence 777776654332221110 01112356899999999999888765432 222234589999999999999999
Q ss_pred HHHHh---CCcEEEEechhhhhh------------hhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchh
Q psy450 254 VATEC---RMNFLAVKGPELLNK------------YIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGV 318 (478)
Q Consensus 254 la~~~---~~~~~~v~~~~l~~~------------~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~ 318 (478)
+|+.+ +.+++.++++++... |+|..+ ...+....+....+|++|||+|++.
T Consensus 559 LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka~------------ 624 (821)
T CHL00095 559 LASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKAH------------ 624 (821)
T ss_pred HHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhCC------------
Confidence 99987 467889988776321 222211 1234444555666899999999987
Q ss_pred HHHHHHHHHHhhcCCC---------CCCCeEEEEEcCCCCC-------------------------------------CC
Q psy450 319 MDRVVSQLLAEMDGVH---------TSQDVFILGATNRVDL-------------------------------------LD 352 (478)
Q Consensus 319 ~~~~~~~ll~~l~~~~---------~~~~v~vI~ttn~~~~-------------------------------------ld 352 (478)
..+.+.|+..++... +..+.++|+|||.... +.
T Consensus 625 -~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 703 (821)
T CHL00095 625 -PDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFR 703 (821)
T ss_pred -HHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcC
Confidence 356778888777422 1346889999885311 23
Q ss_pred ccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcC-------CCCCC---CCHHHHHHh-cCCCCCHHHHHHHHHHHHHH
Q psy450 353 PAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKF-------KLSDD---VSLDSLVHH-FPSQMSGADIYSICSNAWTR 421 (478)
Q Consensus 353 ~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~-------~~~~~---~~~~~la~~-~~~~~sg~di~~l~~~a~~~ 421 (478)
|.++. |+|.++.|.. .+.++..+|+...+..+ ++.-. .-.+.|+.. +...|-++.|+.+++.-...
T Consensus 704 pefln--Rid~ii~F~p-L~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~ 780 (821)
T CHL00095 704 PEFLN--RLDEIIVFRQ-LTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLED 780 (821)
T ss_pred HHHhc--cCCeEEEeCC-CCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHH
Confidence 45666 9999998874 79999999987666432 11111 115556664 22345667888888887777
Q ss_pred HHHHHHh
Q psy450 422 AIRRIIT 428 (478)
Q Consensus 422 a~~r~~~ 428 (478)
++.+.+-
T Consensus 781 ~l~~~~l 787 (821)
T CHL00095 781 PLAEEVL 787 (821)
T ss_pred HHHHHHH
Confidence 7776653
No 50
>KOG0739|consensus
Probab=99.91 E-value=1.6e-24 Score=198.72 Aligned_cols=144 Identities=15% Similarity=0.248 Sum_probs=121.8
Q ss_pred HHHHhhHHHHHHHHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch----------hhHhhhccccccccc
Q psy450 6 SFHNRINEDILSHLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK----------YVYFKLCSFDSVNVK 75 (478)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r----------~~~~~l~~~d~~~~~ 75 (478)
-||++-.-|+ +|+++++... -++.+|. .||+.+|+||||||||++|++| +.+.+|-+|.++.
T Consensus 193 TFFSvSSSDL----vSKWmGESEk-LVknLFe-mARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG-- 264 (439)
T KOG0739|consen 193 TFFSVSSSDL----VSKWMGESEK-LVKNLFE-MARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVG-- 264 (439)
T ss_pred ceEEeehHHH----HHHHhccHHH-HHHHHHH-HHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccc--
Confidence 3666666554 5555565555 8899999 9999999999999999999987 6778888888753
Q ss_pred cccchhhhccCCCcEEEEe-------eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCC
Q psy450 76 SNETKDQQCKQQHKKKLVL-------IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSG 148 (478)
Q Consensus 76 ~~~~~~~~~~~~~~v~via-------ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G 148 (478)
..+.+|+|+| +|.|++|||+++|+||+|+...|..+++.++...+..+ .+.|+ ++|+..|+|
T Consensus 265 ---------~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~L-T~~d~-~eL~~kTeG 333 (439)
T KOG0739|consen 265 ---------NDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVL-TEQDF-KELARKTEG 333 (439)
T ss_pred ---------cCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCcccc-chhhH-HHHHhhcCC
Confidence 3466799999 99999999999999999999999999999998774433 34566 999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHh
Q psy450 149 FERHDLTCLVRLSVKNKMLK 168 (478)
Q Consensus 149 ~s~~di~~l~~~a~~~a~~~ 168 (478)
|||+||.-+++.|.++.+++
T Consensus 334 ySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 334 YSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred CCcCceEEEehhhhhhhHHH
Confidence 99999999999999988764
No 51
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.90 E-value=1.1e-21 Score=215.55 Aligned_cols=381 Identities=15% Similarity=0.177 Sum_probs=231.0
Q ss_pred hhccCccchhhhhHHHHhhhhc-CCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe------
Q psy450 22 NYFATPRYHHLNDIVKINLKKY-NLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL------ 94 (478)
Q Consensus 22 ~~~~~~~~~~~~~if~~~a~~~-~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via------ 94 (478)
+|-++ -+..++.+|+ .+.+. .|+||||||+|.|++.+.-. ..+|... ...+...++.+.+||
T Consensus 245 ~~~g~-~e~~l~~~l~-~~~~~~~~~ILfIDEih~l~~~g~~~---~~~d~~~------~Lk~~l~~g~i~~IgaTt~~e 313 (852)
T TIGR03346 245 KYRGE-FEERLKAVLN-EVTKSEGQIILFIDELHTLVGAGKAE---GAMDAGN------MLKPALARGELHCIGATTLDE 313 (852)
T ss_pred hhhhh-HHHHHHHHHH-HHHhcCCCeEEEeccHHHhhcCCCCc---chhHHHH------HhchhhhcCceEEEEeCcHHH
Confidence 34443 3448999998 77654 69999999999998644110 0111100 011234567799999
Q ss_pred ------eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCC--CChhHHHHHHHhcCCCCHH-----HHHHHHHHH
Q psy450 95 ------IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYG--FDASLVEYLSSVTSGFERH-----DLTCLVRLS 161 (478)
Q Consensus 95 ------ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~--~~~~~i~~la~~t~G~s~~-----di~~l~~~a 161 (478)
+|+|+.|||. .|.++.|+.+++.+||+.+...++..+. ...+.+...+..+.+|... .--.++++|
T Consensus 314 ~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a 392 (852)
T TIGR03346 314 YRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEA 392 (852)
T ss_pred HHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHH
Confidence 6999999995 6899999999999999998877643332 2333346666666665432 223333443
Q ss_pred HHHHHHhhc-----------------------------------------------------------------------
Q psy450 162 VKNKMLKQG----------------------------------------------------------------------- 170 (478)
Q Consensus 162 ~~~a~~~~~----------------------------------------------------------------------- 170 (478)
+.....+..
T Consensus 393 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (852)
T TIGR03346 393 AARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKE 472 (852)
T ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332211000
Q ss_pred --------------------------------------------------CCCCCCCHHHHHHHHHHhhhhcccCCCCC-
Q psy450 171 --------------------------------------------------INKRDLQKEDFQQIYDDLQSRYSDQLDAP- 199 (478)
Q Consensus 171 --------------------------------------------------~~~~~it~~d~~~a~~~~~~~~~~~~~~~- 199 (478)
.....++.+|+...+..+.+.........
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~tgip~~~~~~~e 552 (852)
T TIGR03346 473 EIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWTGIPVSKMLEGE 552 (852)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHhcCCCcccccHHH
Confidence 00012333333333333221111100000
Q ss_pred -----CCCCCCcccccCcHHHHHHHHHHHHhhhhh---CCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEech
Q psy450 200 -----SVPNVSWEDIGGLSKLKAEILSTFRGVNRT---SGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGP 268 (478)
Q Consensus 200 -----~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~---~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~ 268 (478)
.....-...++|++.+.+.+...+...... +..+...+||+||+|||||++|++++..+ +.+++.++++
T Consensus 553 ~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s 632 (852)
T TIGR03346 553 REKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMS 632 (852)
T ss_pred HHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEech
Confidence 000112356899999999999888776432 22234568999999999999999999987 4689999988
Q ss_pred hhhhh-----hhcchHH-----HHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC----
Q psy450 269 ELLNK-----YIGQSEE-----NIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH---- 334 (478)
Q Consensus 269 ~l~~~-----~~g~~~~-----~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---- 334 (478)
++... ..|.... .-..+....+....+||+|||++.+. ..+.+.|+..++.-.
T Consensus 633 ~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~-------------~~v~~~Ll~~l~~g~l~d~ 699 (852)
T TIGR03346 633 EYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH-------------PDVFNVLLQVLDDGRLTDG 699 (852)
T ss_pred hhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC-------------HHHHHHHHHHHhcCceecC
Confidence 76432 1111100 01123333344556799999999886 356677777765321
Q ss_pred -----CCCCeEEEEEcCCCC-------------------------CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHH
Q psy450 335 -----TSQDVFILGATNRVD-------------------------LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVV 384 (478)
Q Consensus 335 -----~~~~v~vI~ttn~~~-------------------------~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~ 384 (478)
+-.+.+||+|||... .+.|.|.. |++..+.|. |++.++..+|+...+
T Consensus 700 ~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~-PL~~e~l~~I~~l~L 776 (852)
T TIGR03346 700 QGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFH-PLGREQIARIVEIQL 776 (852)
T ss_pred CCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecC-CcCHHHHHHHHHHHH
Confidence 124678999999731 13456666 999888887 479999999986655
Q ss_pred hc-------CCCCCCCC---HHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy450 385 RK-------FKLSDDVS---LDSLVHH-FPSQMSGADIYSICSNAWTRAIRRIITSA 430 (478)
Q Consensus 385 ~~-------~~~~~~~~---~~~la~~-~~~~~sg~di~~l~~~a~~~a~~r~~~~~ 430 (478)
.. .++...++ .+.|+.+ +...+..+.++++++......+.+.+-.+
T Consensus 777 ~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l~~ 833 (852)
T TIGR03346 777 GRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKILAG 833 (852)
T ss_pred HHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhC
Confidence 32 12221222 5556664 22346678999999999988888776443
No 52
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.4e-22 Score=210.55 Aligned_cols=383 Identities=14% Similarity=0.178 Sum_probs=252.3
Q ss_pred HHHHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe-
Q psy450 16 LSHLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL- 94 (478)
Q Consensus 16 l~~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via- 94 (478)
-.......|.+.=+..++.|.+ ..++..+.||||||++.|.+...-.. - .||..+. .++...++.+-+||
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~-ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNi------LKPaLARGeL~~IGA 305 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLK-EVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANL------LKPALARGELRCIGA 305 (786)
T ss_pred HHHhccccccCcHHHHHHHHHH-HHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhh------hHHHHhcCCeEEEEe
Confidence 3334444455555568999999 88888899999999999999873222 1 5776432 34667899999999
Q ss_pred -----------eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCC--CChhHHHHHHHhcC-----CCCHHHHHH
Q psy450 95 -----------IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYG--FDASLVEYLSSVTS-----GFERHDLTC 156 (478)
Q Consensus 95 -----------ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~--~~~~~i~~la~~t~-----G~s~~di~~ 156 (478)
-|+||.||| ..|.+..|+.++...||+..-..++..+. ...+-+...+..++ .|-+.---.
T Consensus 306 TT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAID 384 (786)
T COG0542 306 TTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAID 384 (786)
T ss_pred ccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHH
Confidence 799999999 77999999999999999998877643332 12222244443332 333333344
Q ss_pred HHHHHHHHHHHhhc---------------------------------------------------CCCCCCCHHHHHHHH
Q psy450 157 LVRLSVKNKMLKQG---------------------------------------------------INKRDLQKEDFQQIY 185 (478)
Q Consensus 157 l~~~a~~~a~~~~~---------------------------------------------------~~~~~it~~d~~~a~ 185 (478)
++++|+.....+.. ... .++++++...+
T Consensus 385 LiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~Ia~vv 463 (786)
T COG0542 385 LLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEA-EVDEDDIAEVV 463 (786)
T ss_pred HHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhh-ccCHHHHHHHH
Confidence 44444443322100 001 15556666666
Q ss_pred HHhhhhcccCCCCC------CCCCCCcccccCcHHHHHHHHHHHHhhhhhCC---CCCceEEEeCCCCChHHHHHHHHHH
Q psy450 186 DDLQSRYSDQLDAP------SVPNVSWEDIGGLSKLKAEILSTFRGVNRTSG---LKRSGLLLYGPPGTGKTLIAKAVAT 256 (478)
Q Consensus 186 ~~~~~~~~~~~~~~------~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~---~~~~~iLl~Gp~GtGKT~la~~la~ 256 (478)
..+.+.+....... ..+..--..++|++++...+...+.......+ .|..++||.||+|+|||.+|+++|.
T Consensus 464 ~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~ 543 (786)
T COG0542 464 ARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE 543 (786)
T ss_pred HHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH
Confidence 66654433221100 11222235689999999999999887744333 2345688899999999999999999
Q ss_pred HhC---CcEEEEechhhhhh------------hhcchHHHHHHHHHHh-HhCCCeEEEEcCCccccCCCCCCCCCchhHH
Q psy450 257 ECR---MNFLAVKGPELLNK------------YIGQSEENIRNVFLKA-RSAAPCVVFFDELDSLAPRRGQEDQSSGVMD 320 (478)
Q Consensus 257 ~~~---~~~~~v~~~~l~~~------------~~g~~~~~~~~~~~~a-~~~~p~il~iDeid~l~~~~~~~~~~~~~~~ 320 (478)
.+. ..++.++++++..+ |+|..+. ..+..+ ++..+|||+||||++..|
T Consensus 544 ~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeG---G~LTEaVRr~PySViLlDEIEKAHp------------- 607 (786)
T COG0542 544 ALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEG---GQLTEAVRRKPYSVILLDEIEKAHP------------- 607 (786)
T ss_pred HhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccc---cchhHhhhcCCCeEEEechhhhcCH-------------
Confidence 996 78999999999754 4444442 234344 555679999999999884
Q ss_pred HHHHHHHHhhcCCCC---------CCCeEEEEEcCCC----------------------------CCCCccccCCCCCCe
Q psy450 321 RVVSQLLAEMDGVHT---------SQDVFILGATNRV----------------------------DLLDPAILRPGRLDK 363 (478)
Q Consensus 321 ~~~~~ll~~l~~~~~---------~~~v~vI~ttn~~----------------------------~~ld~~l~~~~Rf~~ 363 (478)
.+++.|++.+|.-.- -.+.+||+|||-- ..+.|+++. |+|.
T Consensus 608 dV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~ 685 (786)
T COG0542 608 DVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDE 685 (786)
T ss_pred HHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hccc
Confidence 688899988875322 2368899999831 124567777 9999
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcC-------CCCCCC---CHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHh
Q psy450 364 SLYVGLYEDRISQLGVLKAVVRKF-------KLSDDV---SLDSLVHHFPS-QMSGADIYSICSNAWTRAIRRIIT 428 (478)
Q Consensus 364 ~i~~~~pp~~~~r~~il~~~~~~~-------~~~~~~---~~~~la~~~~~-~~sg~di~~l~~~a~~~a~~r~~~ 428 (478)
.|.|.. .+.+...+|+..++..+ ++.-.+ -.+.++.+..+ .|-++-++.+++.-....+.+.+-
T Consensus 686 II~F~~-L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL 760 (786)
T COG0542 686 IIPFNP-LSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEIL 760 (786)
T ss_pred EEeccC-CCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHHH
Confidence 998874 78999999987766432 222111 14555554422 345566777777766666666543
No 53
>KOG0652|consensus
Probab=99.89 E-value=4.9e-23 Score=185.75 Aligned_cols=164 Identities=13% Similarity=0.170 Sum_probs=142.8
Q ss_pred HHHHhhHHHHHHHHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhcccccc
Q psy450 6 SFHNRINEDILSHLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSV 72 (478)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~ 72 (478)
.|...-+||+..+++ |+ .+.-+|+-|. .|++.+|+||||||+|+|+.+| ..-.+|+++|
T Consensus 232 TFLKLAgPQLVQMfI----Gd-GAkLVRDAFa-LAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLD-- 303 (424)
T KOG0652|consen 232 TFLKLAGPQLVQMFI----GD-GAKLVRDAFA-LAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD-- 303 (424)
T ss_pred hHHHhcchHHHhhhh----cc-hHHHHHHHHH-HhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhc--
Confidence 366666777766544 33 3558999999 9999999999999999999988 2345677777
Q ss_pred ccccccchhhhccCCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHH
Q psy450 73 NVKSNETKDQQCKQQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLS 143 (478)
Q Consensus 73 ~~~~~~~~~~~~~~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la 143 (478)
|++++..|-||| +|||++| |.|+.|+||.|+++.|.+|++.+.+++ ....++.| ++||
T Consensus 304 ----------GFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKM--nv~~DvNf-eELa 370 (424)
T KOG0652|consen 304 ----------GFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKM--NVSDDVNF-EELA 370 (424)
T ss_pred ----------CCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhc--CCCCCCCH-HHHh
Confidence 457888999999 9999999 999999999999999999999999999 78899999 9999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhcc
Q psy450 144 SVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQSRYS 193 (478)
Q Consensus 144 ~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~~~~ 193 (478)
..|++|+|++++.+|-+|.+-+.++ +...++++||..++.+++..+.
T Consensus 371 RsTddFNGAQcKAVcVEAGMiALRr---~atev~heDfmegI~eVqakKk 417 (424)
T KOG0652|consen 371 RSTDDFNGAQCKAVCVEAGMIALRR---GATEVTHEDFMEGILEVQAKKK 417 (424)
T ss_pred hcccccCchhheeeehhhhHHHHhc---ccccccHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999876 6788999999999998875543
No 54
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.89 E-value=8.5e-22 Score=188.58 Aligned_cols=227 Identities=21% Similarity=0.294 Sum_probs=164.8
Q ss_pred cccccCcHHHHHHHHHHHHhhh-----hhCCCC----CceEEEeCCCCChHHHHHHHHHHHh-------CCcEEEEechh
Q psy450 206 WEDIGGLSKLKAEILSTFRGVN-----RTSGLK----RSGLLLYGPPGTGKTLIAKAVATEC-------RMNFLAVKGPE 269 (478)
Q Consensus 206 ~~~i~g~~~~k~~l~~~~~~~~-----~~~~~~----~~~iLl~Gp~GtGKT~la~~la~~~-------~~~~~~v~~~~ 269 (478)
+++++|++.+|+++.+.+.++. ...|.. +.+++|+||||||||++|+++|+.+ ..+++.+++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 5789999999999999888762 123332 4579999999999999999999875 24788899999
Q ss_pred hhhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC
Q psy450 270 LLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349 (478)
Q Consensus 270 l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 349 (478)
+.+.+.|++...+.++|..+. ++||||||+|.|.... ........++.++..|+.. ..++++|+++...+
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~-----~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~ 154 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG-----EKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDE 154 (261)
T ss_pred hhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC-----ccchHHHHHHHHHHHHhcc--CCCEEEEecCCcch
Confidence 999999999999999998875 3599999999997421 1122356778888888753 34566666554322
Q ss_pred -----CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCC-HHHHHHh-------c-CCCCCHHHHHHHH
Q psy450 350 -----LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVS-LDSLVHH-------F-PSQMSGADIYSIC 415 (478)
Q Consensus 350 -----~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~-~~~la~~-------~-~~~~sg~di~~l~ 415 (478)
.++|++++ ||+..+.++. ++.+++.+|++.++......-+.+ +..++.. . ...-+++.+++++
T Consensus 155 ~~~~~~~~p~L~s--Rf~~~i~f~~-~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~ 231 (261)
T TIGR02881 155 MDYFLSLNPGLRS--RFPISIDFPD-YTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNII 231 (261)
T ss_pred hHHHHhcChHHHh--ccceEEEECC-CCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 36889999 9999999986 799999999999987655332222 3333221 1 1123678999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccccHHHH
Q psy450 416 SNAWTRAIRRIITSAPQVKSAPVIVTMDDF 445 (478)
Q Consensus 416 ~~a~~~a~~r~~~~~~~~~~~~~~it~~d~ 445 (478)
..|..+...|..........+-..++.+||
T Consensus 232 e~a~~~~~~r~~~~~~~~~~~~~~l~~~d~ 261 (261)
T TIGR02881 232 EKAIRRQAVRLLDKSDYSKEDLMLLKKEDL 261 (261)
T ss_pred HHHHHHHHHHHhccCCCCHHHHhccChhhC
Confidence 999999988887654333333444555553
No 55
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.88 E-value=1.4e-20 Score=206.17 Aligned_cols=208 Identities=16% Similarity=0.229 Sum_probs=135.2
Q ss_pred cccccCcHHHHHHHHHHHHhhhhh---CCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhh-----
Q psy450 206 WEDIGGLSKLKAEILSTFRGVNRT---SGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKY----- 274 (478)
Q Consensus 206 ~~~i~g~~~~k~~l~~~~~~~~~~---~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~----- 274 (478)
...++|++.+.+.+...+...... ++.+...++|+||+|||||++|+++++.+ +.+++.++++++....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~L 646 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRL 646 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHH
Confidence 456899999999999888766422 12222468999999999999999999887 4578999998774321
Q ss_pred hcchHHH----HHHHHHHh-HhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC---------CCCCeE
Q psy450 275 IGQSEEN----IRNVFLKA-RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH---------TSQDVF 340 (478)
Q Consensus 275 ~g~~~~~----~~~~~~~a-~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~ 340 (478)
.|..... -...+..+ +....+||+|||++.+.+ .+.+.|+..++.-. +..+.+
T Consensus 647 iG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~-------------~v~~~Ll~ile~g~l~d~~gr~vd~rn~i 713 (857)
T PRK10865 647 VGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP-------------DVFNILLQVLDDGRLTDGQGRTVDFRNTV 713 (857)
T ss_pred hCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH-------------HHHHHHHHHHhhCceecCCceEEeecccE
Confidence 1111000 01122233 334448999999998863 45666666665321 123567
Q ss_pred EEEEcCCC-------------------------CCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcC-------C
Q psy450 341 ILGATNRV-------------------------DLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKF-------K 388 (478)
Q Consensus 341 vI~ttn~~-------------------------~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~-------~ 388 (478)
||+|||.. ..+.|+|+. |++..+.|.+ ++.++...|++.++..+ +
T Consensus 714 iI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~P-L~~edl~~Iv~~~L~~l~~rl~~~g 790 (857)
T PRK10865 714 VIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHP-LGEQHIASIAQIQLQRLYKRLEERG 790 (857)
T ss_pred EEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCC-CCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 89999862 124567777 9998888874 78888888887766442 2
Q ss_pred CCCCCC---HHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy450 389 LSDDVS---LDSLVHHF-PSQMSGADIYSICSNAWTRAIRRIITS 429 (478)
Q Consensus 389 ~~~~~~---~~~la~~~-~~~~sg~di~~l~~~a~~~a~~r~~~~ 429 (478)
+.-.++ ++.|+.+. ...|..+.|+.+++.-....+.+.+-.
T Consensus 791 i~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~iL~ 835 (857)
T PRK10865 791 YEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILS 835 (857)
T ss_pred CcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHHHc
Confidence 222222 44455432 122445788888888888877776543
No 56
>CHL00181 cbbX CbbX; Provisional
Probab=99.88 E-value=3.1e-21 Score=185.83 Aligned_cols=231 Identities=21% Similarity=0.265 Sum_probs=166.8
Q ss_pred cccccCcHHHHHHHHHHHHhh-----hhhCCCC----CceEEEeCCCCChHHHHHHHHHHHhC-------CcEEEEechh
Q psy450 206 WEDIGGLSKLKAEILSTFRGV-----NRTSGLK----RSGLLLYGPPGTGKTLIAKAVATECR-------MNFLAVKGPE 269 (478)
Q Consensus 206 ~~~i~g~~~~k~~l~~~~~~~-----~~~~~~~----~~~iLl~Gp~GtGKT~la~~la~~~~-------~~~~~v~~~~ 269 (478)
+++++|++++|+++.+++.+. ....|.. +.+++|+||||||||++|+++|+.+. .+++.++.++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 347999999999999887654 1223332 44699999999999999999998762 3689999999
Q ss_pred hhhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC-
Q psy450 270 LLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRV- 348 (478)
Q Consensus 270 l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~- 348 (478)
+.+.+.|.++.....+++.+.. +||||||+|.+...++ ......+.+..|+..|+.. ..+++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~----~~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~~ 172 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDN----ERDYGSEAIEILLQVMENQ--RDDLVVIFAGYKDR 172 (287)
T ss_pred HHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCC----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 9999999988888888887643 5999999999974321 1223367788888888743 3567788877642
Q ss_pred ----CCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCC-HHHHHHh----c-CCCCC-HHHHHHHHHH
Q psy450 349 ----DLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVS-LDSLVHH----F-PSQMS-GADIYSICSN 417 (478)
Q Consensus 349 ----~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~-~~~la~~----~-~~~~s-g~di~~l~~~ 417 (478)
..++|++++ ||+..++|+. ++.+++..|++.++++....-+.+ ...+... . ...|. ++++++++..
T Consensus 173 ~~~~~~~np~L~s--R~~~~i~F~~-~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~ 249 (287)
T CHL00181 173 MDKFYESNPGLSS--RIANHVDFPD-YTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDR 249 (287)
T ss_pred HHHHHhcCHHHHH--hCCceEEcCC-cCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 134689999 9999999996 699999999999997655332221 2222221 1 12344 8999999999
Q ss_pred HHHHHHHHHHhcCCC--CCCCCccccHHHHHhc
Q psy450 418 AWTRAIRRIITSAPQ--VKSAPVIVTMDDFLGA 448 (478)
Q Consensus 418 a~~~a~~r~~~~~~~--~~~~~~~it~~d~~~A 448 (478)
|..+...|...+... +..+-..++.+|+.+.
T Consensus 250 ~~~~~~~r~~~~~~~~~~~~~l~~~~~~d~~~~ 282 (287)
T CHL00181 250 ARMRQANRIFESGGRVLTKADLVTIEAEDILKS 282 (287)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHhCCCHHHHhHH
Confidence 999999998765321 1223445666666543
No 57
>KOG0728|consensus
Probab=99.88 E-value=2.2e-22 Score=180.56 Aligned_cols=153 Identities=12% Similarity=0.194 Sum_probs=134.6
Q ss_pred HHHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhh
Q psy450 17 SHLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQ 83 (478)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~ 83 (478)
+.|+.+|+++... .+|.+|- .|++++|+|||.||||+|+.+| ..-.+|+++|++
T Consensus 215 selvqk~igegsr-mvrelfv-marehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgf----------- 281 (404)
T KOG0728|consen 215 SELVQKYIGEGSR-MVRELFV-MAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGF----------- 281 (404)
T ss_pred HHHHHHHhhhhHH-HHHHHHH-HHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccc-----------
Confidence 4578899998877 9999998 9999999999999999999988 234567778854
Q ss_pred ccCCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHH
Q psy450 84 CKQQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDL 154 (478)
Q Consensus 84 ~~~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di 154 (478)
....++-||- +|||++| |.|+.|+||.|+.+.|.+||+.+.+++ ++...+++ +.+|+...|.||+++
T Consensus 282 -eatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkm--nl~rgi~l-~kiaekm~gasgaev 357 (404)
T KOG0728|consen 282 -EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM--NLTRGINL-RKIAEKMPGASGAEV 357 (404)
T ss_pred -ccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh--chhcccCH-HHHHHhCCCCccchh
Confidence 5566666655 9999999 999999999999999999999999999 67778888 999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhh
Q psy450 155 TCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQ 189 (478)
Q Consensus 155 ~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~ 189 (478)
+.+|.+|.+.+.++ ....+|++||+-|...+-
T Consensus 358 k~vcteagm~alre---rrvhvtqedfemav~kvm 389 (404)
T KOG0728|consen 358 KGVCTEAGMYALRE---RRVHVTQEDFEMAVAKVM 389 (404)
T ss_pred hhhhhhhhHHHHHH---hhccccHHHHHHHHHHHH
Confidence 99999999999876 467899999999988764
No 58
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.87 E-value=8e-22 Score=168.63 Aligned_cols=130 Identities=42% Similarity=0.763 Sum_probs=116.3
Q ss_pred EEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHHHHHHHHHhHhCC-CeEEEEcCCccccCCCCCCCCC
Q psy450 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAA-PCVVFFDELDSLAPRRGQEDQS 315 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~-p~il~iDeid~l~~~~~~~~~~ 315 (478)
+||+||||||||++++.+|+.++.+++.+++.++.+.+.+.+.+.+..+|..+.... |+||+|||+|.+.+.. ....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~--~~~~ 78 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS--QPSS 78 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC--STSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc--cccc
Confidence 689999999999999999999999999999999998889999999999999998887 9999999999999876 3334
Q ss_pred chhHHHHHHHHHHhhcCCCCC-CCeEEEEEcCCCCCCCccccCCCCCCeEEEeCC
Q psy450 316 SGVMDRVVSQLLAEMDGVHTS-QDVFILGATNRVDLLDPAILRPGRLDKSLYVGL 369 (478)
Q Consensus 316 ~~~~~~~~~~ll~~l~~~~~~-~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~ 369 (478)
......+.+.|+..++..... .+++||+|||.++.+++++++ +||+..+++++
T Consensus 79 ~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 79 SSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 555678889999999987665 569999999999999999997 79999999864
No 59
>KOG0737|consensus
Probab=99.87 E-value=1.4e-22 Score=192.39 Aligned_cols=144 Identities=17% Similarity=0.236 Sum_probs=125.5
Q ss_pred HHHHhhHHHHHHHHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch----------hhHhhhccccccccc
Q psy450 6 SFHNRINEDILSHLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK----------YVYFKLCSFDSVNVK 75 (478)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r----------~~~~~l~~~d~~~~~ 75 (478)
+|-|+..-.+++ ++|+++.. -++.+|. .|.+.+||||||||+|++.+.| ..++|...||++..
T Consensus 154 ~fInv~~s~lt~----KWfgE~eK-lv~AvFs-lAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s- 226 (386)
T KOG0737|consen 154 NFINVSVSNLTS----KWFGEAQK-LVKAVFS-LASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSS- 226 (386)
T ss_pred Ccceeeccccch----hhHHHHHH-HHHHHHh-hhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccC-
Confidence 455555444444 77766655 8999999 9999999999999999999877 68899999998754
Q ss_pred cccchhhhccCCCcEEEEe-------eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCC
Q psy450 76 SNETKDQQCKQQHKKKLVL-------IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSG 148 (478)
Q Consensus 76 ~~~~~~~~~~~~~~v~via-------ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G 148 (478)
+.+..|+|+| +|.|+.||+.+.++|++|+..+|.+||+.+++.. ++..++|+ ..+|..|+|
T Consensus 227 ---------~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e--~~e~~vD~-~~iA~~t~G 294 (386)
T KOG0737|consen 227 ---------KDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKE--KLEDDVDL-DEIAQMTEG 294 (386)
T ss_pred ---------CCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhccc--ccCcccCH-HHHHHhcCC
Confidence 3455699999 9999999999999999999999999999999887 77889998 999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHh
Q psy450 149 FERHDLTCLVRLSVKNKMLK 168 (478)
Q Consensus 149 ~s~~di~~l~~~a~~~a~~~ 168 (478)
|||+||+++|+.|+...+++
T Consensus 295 ySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 295 YSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred CcHHHHHHHHHHHhHhHHHH
Confidence 99999999999999988754
No 60
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.3e-22 Score=205.79 Aligned_cols=161 Identities=17% Similarity=0.207 Sum_probs=142.5
Q ss_pred HHHhhHHHHHHHHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccc
Q psy450 7 FHNRINEDILSHLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVN 73 (478)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~ 73 (478)
|+++-+.+++. .|-+.-++.+|++|. .|++.+|||+||||+|+++..| .+|++|.+||++
T Consensus 211 Ff~iSGS~FVe-----mfVGvGAsRVRdLF~-qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF- 283 (596)
T COG0465 211 FFSISGSDFVE-----MFVGVGASRVRDLFE-QAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF- 283 (596)
T ss_pred ceeccchhhhh-----hhcCCCcHHHHHHHH-HhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccC-
Confidence 44444444444 455667889999999 9999999999999999999998 799999999965
Q ss_pred cccccchhhhccCCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHH
Q psy450 74 VKSNETKDQQCKQQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSS 144 (478)
Q Consensus 74 ~~~~~~~~~~~~~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~ 144 (478)
..+..|+|+| +||||+| |||+.|.++.||-..|.+|++.|.++. +++.++++ ..+|+
T Consensus 284 -----------~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~--~l~~~Vdl-~~iAr 349 (596)
T COG0465 284 -----------GGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNK--PLAEDVDL-KKIAR 349 (596)
T ss_pred -----------CCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcC--CCCCcCCH-HHHhh
Confidence 5677899999 9999999 999999999999999999999999888 77889998 88999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhh
Q psy450 145 VTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQSR 191 (478)
Q Consensus 145 ~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~~ 191 (478)
.|.||+|+|+.+++++|+..+.++ +...+++.||..|..++-..
T Consensus 350 ~tpGfsGAdL~nl~NEAal~aar~---n~~~i~~~~i~ea~drv~~G 393 (596)
T COG0465 350 GTPGFSGADLANLLNEAALLAARR---NKKEITMRDIEEAIDRVIAG 393 (596)
T ss_pred hCCCcccchHhhhHHHHHHHHHHh---cCeeEeccchHHHHHHHhcC
Confidence 999999999999999999999876 67889999999999988643
No 61
>KOG0727|consensus
Probab=99.87 E-value=8e-22 Score=177.17 Aligned_cols=152 Identities=14% Similarity=0.230 Sum_probs=135.4
Q ss_pred HHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhhc
Q psy450 18 HLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQC 84 (478)
Q Consensus 18 ~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~~ 84 (478)
.++.+|.|+.-. .+|++|+ .|++++|+||||||+|+|+.+| ++-.+|++||++
T Consensus 224 efvqkylgegpr-mvrdvfr-lakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgf------------ 289 (408)
T KOG0727|consen 224 EFVQKYLGEGPR-MVRDVFR-LAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGF------------ 289 (408)
T ss_pred HHHHHHhccCcH-HHHHHHH-HHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCc------------
Confidence 456677777665 9999999 9999999999999999999988 567788899954
Q ss_pred cCCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHH
Q psy450 85 KQQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLT 155 (478)
Q Consensus 85 ~~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~ 155 (478)
+...+|-||. +|||++| |.|+.|+||+||..+++-++...++++ .++.++|+ +.+..+.+..||+||.
T Consensus 290 dq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm--~ls~~vdl-e~~v~rpdkis~adi~ 366 (408)
T KOG0727|consen 290 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKM--NLSDEVDL-EDLVARPDKISGADIN 366 (408)
T ss_pred CcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcc--cCCcccCH-HHHhcCccccchhhHH
Confidence 6667777776 9999999 999999999999999999999999999 88999998 9999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhh
Q psy450 156 CLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQ 189 (478)
Q Consensus 156 ~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~ 189 (478)
.+|++|.+.+.++ +...+...||+++.....
T Consensus 367 aicqeagm~avr~---nryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 367 AICQEAGMLAVRE---NRYVVLQKDFEKAYKTVV 397 (408)
T ss_pred HHHHHHhHHHHHh---cceeeeHHHHHHHHHhhc
Confidence 9999999999876 677889999999988664
No 62
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.87 E-value=1.1e-20 Score=182.37 Aligned_cols=229 Identities=19% Similarity=0.256 Sum_probs=167.6
Q ss_pred cccCcHHHHHHHHHHHHhh-----hhhCCCC----CceEEEeCCCCChHHHHHHHHHHHhC-------CcEEEEechhhh
Q psy450 208 DIGGLSKLKAEILSTFRGV-----NRTSGLK----RSGLLLYGPPGTGKTLIAKAVATECR-------MNFLAVKGPELL 271 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~-----~~~~~~~----~~~iLl~Gp~GtGKT~la~~la~~~~-------~~~~~v~~~~l~ 271 (478)
+++|++++|+++.++..+. ....|.. ..+++|+||||||||++|+++|+.+. .+++.++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 6899999999999887764 2223333 34899999999999999999988763 379999999999
Q ss_pred hhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC--C
Q psy450 272 NKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRV--D 349 (478)
Q Consensus 272 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~--~ 349 (478)
+.+.|.++..+..+|+.+.. ++|||||++.+.+.+. ......++...|+..|+. ...+++||++++.. +
T Consensus 103 ~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~----~~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~~ 173 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN----ERDYGQEAIEILLQVMEN--QRDDLVVILAGYKDRMD 173 (284)
T ss_pred HhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC----ccchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHH
Confidence 99999998888888887743 6999999999964321 122345677888888874 34567888877643 2
Q ss_pred ---CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCC-HHHHHHhc-----CCC-CCHHHHHHHHHHHH
Q psy450 350 ---LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVS-LDSLVHHF-----PSQ-MSGADIYSICSNAW 419 (478)
Q Consensus 350 ---~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~-----~~~-~sg~di~~l~~~a~ 419 (478)
.++|++++ ||...+.++. ++.+++..|++.++++....-+.+ ...+..+. ... -+++++++++..+.
T Consensus 174 ~~~~~np~L~s--R~~~~i~fp~-l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~ 250 (284)
T TIGR02880 174 SFFESNPGFSS--RVAHHVDFPD-YSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRAR 250 (284)
T ss_pred HHHhhCHHHHh--hCCcEEEeCC-cCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 25899999 9999999986 689999999999998765332222 33333321 022 25799999999999
Q ss_pred HHHHHHHHhcCCC--CCCCCccccHHHHHhc
Q psy450 420 TRAIRRIITSAPQ--VKSAPVIVTMDDFLGA 448 (478)
Q Consensus 420 ~~a~~r~~~~~~~--~~~~~~~it~~d~~~A 448 (478)
.+...|...+... ...+-..||.+|+.++
T Consensus 251 ~~~~~r~~~~~~~~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 251 LRQANRLFCDLDRVLDKSDLETIDPEDLLAS 281 (284)
T ss_pred HHHHHHHhcCcCCCCCHHHHhCCCHHHHhhc
Confidence 9999988754321 2233445777777655
No 63
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.2e-21 Score=204.77 Aligned_cols=165 Identities=18% Similarity=0.283 Sum_probs=142.7
Q ss_pred HHHHhhHHHHHHHHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch----------hhHhhhccccccccc
Q psy450 6 SFHNRINEDILSHLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK----------YVYFKLCSFDSVNVK 75 (478)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r----------~~~~~l~~~d~~~~~ 75 (478)
+|.++..+ +|+++|++++.. +++.+|. .|++.+||||||||+|++++.| +++++|.+||++
T Consensus 303 ~fi~v~~~----~l~sk~vGesek-~ir~~F~-~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~--- 373 (494)
T COG0464 303 RFISVKGS----ELLSKWVGESEK-NIRELFE-KARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGI--- 373 (494)
T ss_pred eEEEeeCH----HHhccccchHHH-HHHHHHH-HHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCC---
Confidence 45556555 456666666666 9999999 9999999999999999999866 799999999965
Q ss_pred cccchhhhccCCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhc
Q psy450 76 SNETKDQQCKQQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVT 146 (478)
Q Consensus 76 ~~~~~~~~~~~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t 146 (478)
....+|+||| +|||++| |||+.|+|++||.++|.+||+.++......+..++++ +.+++.|
T Consensus 374 ---------e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~-~~l~~~t 443 (494)
T COG0464 374 ---------EKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDL-EELAEIT 443 (494)
T ss_pred ---------CccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhH-HHHHHHh
Confidence 5566799999 9999999 9999999999999999999999998654345678888 9999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhh
Q psy450 147 SGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQSR 191 (478)
Q Consensus 147 ~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~~ 191 (478)
+||+|+||..+|++|+..+..+.. ...++.+||..|++...|+
T Consensus 444 ~~~sgadi~~i~~ea~~~~~~~~~--~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 444 EGYSGADIAALVREAALEALREAR--RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhc--cCCccHHHHHHHHHhcCCC
Confidence 999999999999999999986521 5689999999999997765
No 64
>KOG0731|consensus
Probab=99.86 E-value=1.2e-21 Score=203.84 Aligned_cols=161 Identities=16% Similarity=0.198 Sum_probs=141.2
Q ss_pred HHHhhHHHHHHHHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch--------------hhHhhhcccccc
Q psy450 7 FHNRINEDILSHLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK--------------YVYFKLCSFDSV 72 (478)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r--------------~~~~~l~~~d~~ 72 (478)
|+++=..|++.++.. ..+..+|++|. .||+++|||+||||||++++.| .+||+|.+||++
T Consensus 372 F~svSGSEFvE~~~g-----~~asrvr~lf~-~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731|consen 372 FFSVSGSEFVEMFVG-----VGASRVRDLFP-LARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred eeeechHHHHHHhcc-----cchHHHHHHHH-HhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC
Confidence 666777777766543 33679999999 9999999999999999999987 489999999965
Q ss_pred ccccccchhhhccCCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCC-CCChhHHHHH
Q psy450 73 NVKSNETKDQQCKQQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDY-GFDASLVEYL 142 (478)
Q Consensus 73 ~~~~~~~~~~~~~~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~-~~~~~~i~~l 142 (478)
....+|+|+| +|+|++| |||+.|++++||..+|.+|++.|+++. .+ ..++++ ..+
T Consensus 446 ------------~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~--~~~~e~~dl-~~~ 510 (774)
T KOG0731|consen 446 ------------ETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKK--KLDDEDVDL-SKL 510 (774)
T ss_pred ------------cCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhcc--CCCcchhhH-HHH
Confidence 5668899999 9999999 999999999999999999999999888 45 366777 669
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhh
Q psy450 143 SSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQSR 191 (478)
Q Consensus 143 a~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~~ 191 (478)
|.+|+||+|+||.++|++|+..+.++ ....|+..||+.|+++....
T Consensus 511 a~~t~gf~gadl~n~~neaa~~a~r~---~~~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 511 ASLTPGFSGADLANLCNEAALLAARK---GLREIGTKDLEYAIERVIAG 556 (774)
T ss_pred HhcCCCCcHHHHHhhhhHHHHHHHHh---ccCccchhhHHHHHHHHhcc
Confidence 99999999999999999999999876 67889999999999977644
No 65
>KOG0726|consensus
Probab=99.86 E-value=6.8e-22 Score=180.99 Aligned_cols=154 Identities=13% Similarity=0.197 Sum_probs=135.3
Q ss_pred HHHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhh
Q psy450 17 SHLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQ 83 (478)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~ 83 (478)
+.|+.+|.++.-. -+|.+|+ .|.+++|+|+||||||+++.+| ..-.+|+++|+
T Consensus 253 seLiQkylGdGpk-lvRqlF~-vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldG------------ 318 (440)
T KOG0726|consen 253 SELIQKYLGDGPK-LVRELFR-VAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG------------ 318 (440)
T ss_pred HHHHHHHhccchH-HHHHHHH-HHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccC------------
Confidence 4567788887766 8999999 9999999999999999999988 23466777884
Q ss_pred ccCCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHH
Q psy450 84 CKQQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDL 154 (478)
Q Consensus 84 ~~~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di 154 (478)
+++++.|-||- +|||+.| |.|+.|+|+.||...++.|+..+++++ .+..++.+ +.+....+.+||+||
T Consensus 319 FdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~M--tl~~dVnl-e~li~~kddlSGAdI 395 (440)
T KOG0726|consen 319 FDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRM--TLAEDVNL-EELIMTKDDLSGADI 395 (440)
T ss_pred ccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeeccc--chhccccH-HHHhhcccccccccH
Confidence 57788887776 9999999 999999999999999999999999999 88889998 998888899999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhh
Q psy450 155 TCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQS 190 (478)
Q Consensus 155 ~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~ 190 (478)
+++|.+|...+.++ ..-.++++||..|.+.+--
T Consensus 396 kAictEaGllAlRe---rRm~vt~~DF~ka~e~V~~ 428 (440)
T KOG0726|consen 396 KAICTEAGLLALRE---RRMKVTMEDFKKAKEKVLY 428 (440)
T ss_pred HHHHHHHhHHHHHH---HHhhccHHHHHHHHHHHHH
Confidence 99999999999876 3567999999999887643
No 66
>KOG0743|consensus
Probab=99.85 E-value=2e-20 Score=182.59 Aligned_cols=213 Identities=23% Similarity=0.382 Sum_probs=157.8
Q ss_pred CCcccccCcHHHHHHHHHHHHhh------hhhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhc
Q psy450 204 VSWEDIGGLSKLKAEILSTFRGV------NRTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIG 276 (478)
Q Consensus 204 ~~~~~i~g~~~~k~~l~~~~~~~------~~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g 276 (478)
.+|+.++-..+.|+.+.+-+..+ ..+.|.+ .+|.|||||||||||+++.|+|+.++..++-++.++. +
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v-----~ 272 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEV-----K 272 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccc-----c
Confidence 78999999999999988877766 3456777 8899999999999999999999999999998887654 2
Q ss_pred chHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCC----c-hhHHHHHHHHHHhhcCCCCCC--CeEEEEEcCCCC
Q psy450 277 QSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQS----S-GVMDRVVSQLLAEMDGVHTSQ--DVFILGATNRVD 349 (478)
Q Consensus 277 ~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~----~-~~~~~~~~~ll~~l~~~~~~~--~v~vI~ttn~~~ 349 (478)
.... ++.++...... +||+|.|||.-+.-++..... . ....-.++.||+.+||+.... ..+||.|||+++
T Consensus 273 ~n~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 273 LDSD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred CcHH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 2333 77777666544 699999999876432211111 1 011245788999999998876 689999999999
Q ss_pred CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhc-CCCCCHHHHHHHHHH---HHHHHHHH
Q psy450 350 LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHF-PSQMSGADIYSICSN---AWTRAIRR 425 (478)
Q Consensus 350 ~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~-~~~~sg~di~~l~~~---a~~~a~~r 425 (478)
.|||||+||||+|.+|+++. ++.+....+++.++..-. +..-+.++.+.. ....|++|+...+.. .+..++++
T Consensus 350 kLDPALlRpGRmDmhI~mgy-Ctf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~ 426 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGY-CTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKG 426 (457)
T ss_pred hcCHhhcCCCcceeEEEcCC-CCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHH
Confidence 99999999999999999997 899988888888775422 233355554432 123689988755422 34455555
Q ss_pred HH
Q psy450 426 II 427 (478)
Q Consensus 426 ~~ 427 (478)
..
T Consensus 427 Lv 428 (457)
T KOG0743|consen 427 LV 428 (457)
T ss_pred HH
Confidence 44
No 67
>KOG0744|consensus
Probab=99.85 E-value=2.2e-21 Score=180.17 Aligned_cols=230 Identities=26% Similarity=0.360 Sum_probs=171.8
Q ss_pred CcccccCcHHHHHHHHHHHHhhhhh--CCCC------CceEEEeCCCCChHHHHHHHHHHHhC---------CcEEEEec
Q psy450 205 SWEDIGGLSKLKAEILSTFRGVNRT--SGLK------RSGLLLYGPPGTGKTLIAKAVATECR---------MNFLAVKG 267 (478)
Q Consensus 205 ~~~~i~g~~~~k~~l~~~~~~~~~~--~~~~------~~~iLl~Gp~GtGKT~la~~la~~~~---------~~~~~v~~ 267 (478)
-|+.++--...|++|..+......- .+.. .+-+|+|||||||||+|++++|+.+. ..++++++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 3788888888999988876655221 1111 45689999999999999999999883 35789999
Q ss_pred hhhhhhhhcchHHHHHHHHHHhHh-----CCCeEEEEcCCccccCCCCCC--CCCchhHHHHHHHHHHhhcCCCCCCCeE
Q psy450 268 PELLNKYIGQSEENIRNVFLKARS-----AAPCVVFFDELDSLAPRRGQE--DQSSGVMDRVVSQLLAEMDGVHTSQDVF 340 (478)
Q Consensus 268 ~~l~~~~~g~~~~~~~~~~~~a~~-----~~p~il~iDeid~l~~~~~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~v~ 340 (478)
..+.++|.+++.+.+.++|++... ..-..++|||++++...|.+. .......-|++++++.++|.+...++|+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 999999999999999999988753 222456799999998665221 2222233589999999999999999999
Q ss_pred EEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCC---C--C-------------CCCCHHHHHHhc
Q psy450 341 ILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFK---L--S-------------DDVSLDSLVHHF 402 (478)
Q Consensus 341 vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~---~--~-------------~~~~~~~la~~~ 402 (478)
+++|+|-.+.+|.++.. |-|.+.+++. |+.+.+.+|++.++..+- + . .+.....++...
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~-Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~ 376 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGP-PTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELS 376 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCC-ccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHh
Confidence 99999999999999999 9999999996 799999999998875431 1 0 011133344444
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhch
Q psy450 403 PSQMSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGAC 449 (478)
Q Consensus 403 ~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A~ 449 (478)
+.|.+|+-|+.+=-.|. ... ....+++.++|..|+
T Consensus 377 ~~gLSGRtlrkLP~Lah----a~y--------~~~~~v~~~~fl~al 411 (423)
T KOG0744|consen 377 TVGLSGRTLRKLPLLAH----AEY--------FRTFTVDLSNFLLAL 411 (423)
T ss_pred hcCCccchHhhhhHHHH----Hhc--------cCCCccChHHHHHHH
Confidence 57888887776533222 222 124579999998883
No 68
>KOG0742|consensus
Probab=99.85 E-value=2.1e-20 Score=178.47 Aligned_cols=211 Identities=22% Similarity=0.306 Sum_probs=158.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCC--CCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcch
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSG--LKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQS 278 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~--~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~ 278 (478)
.++..+++++.......++..+...-..... .+-++|+||||||||||+.|+-||...|..+-.+.+.+.... -.+.
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~qa 427 (630)
T KOG0742|consen 349 RGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQA 427 (630)
T ss_pred cCCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chHH
Confidence 3455688888888888888876655432221 125789999999999999999999999999888877665322 2345
Q ss_pred HHHHHHHHHHhHhCCC-eEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccC
Q psy450 279 EENIRNVFLKARSAAP-CVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILR 357 (478)
Q Consensus 279 ~~~~~~~~~~a~~~~p-~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~ 357 (478)
...++++|+.+++... -+|||||+|.+...|..... +...+..++.||-.-. ....+++++.+||+|..+|.++-.
T Consensus 428 VTkiH~lFDWakkS~rGLllFIDEADAFLceRnktym-SEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D 504 (630)
T KOG0742|consen 428 VTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYM-SEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND 504 (630)
T ss_pred HHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhh-cHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh
Confidence 6678999999987654 47789999999988764433 3344677788764432 245679999999999999999999
Q ss_pred CCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCC-----------------------CCC----HHHHHHhcCCCCCHHH
Q psy450 358 PGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSD-----------------------DVS----LDSLVHHFPSQMSGAD 410 (478)
Q Consensus 358 ~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~-----------------------~~~----~~~la~~~~~~~sg~d 410 (478)
|+|..++||+ |..++|.++|..++.+.-... ..+ +.+.|+++ +||||++
T Consensus 505 --Ride~veFpL-PGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkT-eGfSGRE 580 (630)
T KOG0742|consen 505 --RIDEVVEFPL-PGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKT-EGFSGRE 580 (630)
T ss_pred --hhhheeecCC-CChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhc-cCCcHHH
Confidence 9999999999 699999999988886432110 111 45566666 8999999
Q ss_pred HHHHHHHHH
Q psy450 411 IYSICSNAW 419 (478)
Q Consensus 411 i~~l~~~a~ 419 (478)
|..++....
T Consensus 581 iakLva~vQ 589 (630)
T KOG0742|consen 581 IAKLVASVQ 589 (630)
T ss_pred HHHHHHHHH
Confidence 999876544
No 69
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.85 E-value=5.3e-21 Score=195.58 Aligned_cols=155 Identities=10% Similarity=0.107 Sum_probs=130.5
Q ss_pred HHHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch-----------hhHhhhccccccccccccchhhhcc
Q psy450 17 SHLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-----------YVYFKLCSFDSVNVKSNETKDQQCK 85 (478)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-----------~~~~~l~~~d~~~~~~~~~~~~~~~ 85 (478)
..++++|.+++.. +++.+|+ .|+..+||||||||+|.+++.+ +++++++.|+ .
T Consensus 293 ~~l~~~~vGese~-~l~~~f~-~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~--------------~ 356 (489)
T CHL00195 293 GKLFGGIVGESES-RMRQMIR-IAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLS--------------E 356 (489)
T ss_pred HHhcccccChHHH-HHHHHHH-HHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHh--------------c
Confidence 3466777777655 9999999 9999999999999999998642 5667777777 2
Q ss_pred CCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHH
Q psy450 86 QQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTC 156 (478)
Q Consensus 86 ~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~ 156 (478)
...+|+||| +|||++| |||+.++|++|+.++|.+||+.++.+.......+.++ +.+|+.|+||||+||+.
T Consensus 357 ~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl-~~La~~T~GfSGAdI~~ 435 (489)
T CHL00195 357 KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDI-KKLSKLSNKFSGAEIEQ 435 (489)
T ss_pred CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCH-HHHHhhcCCCCHHHHHH
Confidence 356788888 9999999 9999999999999999999999998763222246677 99999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhc
Q psy450 157 LVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQSRY 192 (478)
Q Consensus 157 l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~~~ 192 (478)
+|.+|+..+..+ ..+++.+||..|+..+.|..
T Consensus 436 lv~eA~~~A~~~----~~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 436 SIIEAMYIAFYE----KREFTTDDILLALKQFIPLA 467 (489)
T ss_pred HHHHHHHHHHHc----CCCcCHHHHHHHHHhcCCCc
Confidence 999999988743 56799999999999998753
No 70
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.85 E-value=1.5e-20 Score=188.41 Aligned_cols=154 Identities=15% Similarity=0.244 Sum_probs=131.8
Q ss_pred HHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhhc
Q psy450 18 HLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQC 84 (478)
Q Consensus 18 ~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~~ 84 (478)
.++++|.++... .++.+|. .|+..+||||||||+|+++.+| .+.+++++||++
T Consensus 214 ~l~~k~~ge~~~-~lr~lf~-~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~------------ 279 (398)
T PTZ00454 214 EFVQKYLGEGPR-MVRDVFR-LARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF------------ 279 (398)
T ss_pred HHHHHhcchhHH-HHHHHHH-HHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc------------
Confidence 345666666544 8999999 9999999999999999998654 466778888854
Q ss_pred cCCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHH
Q psy450 85 KQQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLT 155 (478)
Q Consensus 85 ~~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~ 155 (478)
....+|+||+ +|||++| |||+.|+|+.|+.++|.+||+.++.++ .+..++++ ..++..|+||||+||.
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~--~l~~dvd~-~~la~~t~g~sgaDI~ 356 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM--NLSEEVDL-EDFVSRPEKISAADIA 356 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC--CCCcccCH-HHHHHHcCCCCHHHHH
Confidence 4455677777 9999999 999999999999999999999999887 66778888 9999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhh
Q psy450 156 CLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQSR 191 (478)
Q Consensus 156 ~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~~ 191 (478)
.+|++|...++++ +...++.+||..|+..+...
T Consensus 357 ~l~~eA~~~A~r~---~~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 357 AICQEAGMQAVRK---NRYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred HHHHHHHHHHHHc---CCCccCHHHHHHHHHHHHhc
Confidence 9999999999865 45689999999999987543
No 71
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.83 E-value=4.2e-20 Score=205.12 Aligned_cols=155 Identities=10% Similarity=0.005 Sum_probs=127.9
Q ss_pred ccCccchhhhhHHHHhhhhcCCCeEEEecccccccch----hhHhhhccccccccccccchhhhccCCCcEEEEe-----
Q psy450 24 FATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK----YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL----- 94 (478)
Q Consensus 24 ~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r----~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via----- 94 (478)
+....+..|+.+|+ .|++++||||||||||+|+..+ .+++++.+||+... .....+|+|||
T Consensus 1713 ~~~e~~~rIr~lFe-lARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~---------~~s~~~VIVIAATNRP 1782 (2281)
T CHL00206 1713 MPKIDRFYITLQFE-LAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCE---------RCSTRNILVIASTHIP 1782 (2281)
T ss_pred hhhhhHHHHHHHHH-HHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccc---------cCCCCCEEEEEeCCCc
Confidence 34445557999999 9999999999999999999864 47899999996421 12456799999
Q ss_pred --eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCC-hhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Q psy450 95 --IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFD-ASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQ 169 (478)
Q Consensus 95 --ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~-~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~ 169 (478)
+|||++| |||+.|+|+.|+..+|.+++..++...+..+..+ +++ +.+|..|.|||||||+++|++|+..++++
T Consensus 1783 D~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl-~~LA~~T~GfSGADLanLvNEAaliAirq- 1860 (2281)
T CHL00206 1783 QKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHT-NGFGSITMGSNARDLVALTNEALSISITQ- 1860 (2281)
T ss_pred ccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccH-HHHHHhCCCCCHHHHHHHHHHHHHHHHHc-
Confidence 9999999 9999999999999999999987653322244433 456 99999999999999999999999999876
Q ss_pred cCCCCCCCHHHHHHHHHHhhhhc
Q psy450 170 GINKRDLQKEDFQQIYDDLQSRY 192 (478)
Q Consensus 170 ~~~~~~it~~d~~~a~~~~~~~~ 192 (478)
+...|+.+++..|+.+.....
T Consensus 1861 --~ks~Id~~~I~~Al~Rq~~g~ 1881 (2281)
T CHL00206 1861 --KKSIIDTNTIRSALHRQTWDL 1881 (2281)
T ss_pred --CCCccCHHHHHHHHHHHHhhh
Confidence 567899999999999887543
No 72
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.83 E-value=2.6e-19 Score=161.54 Aligned_cols=187 Identities=21% Similarity=0.345 Sum_probs=120.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHH
Q psy450 202 PNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEEN 281 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~ 281 (478)
.+.++++++|+++++..+.-++..... .+....+++||||||+||||+|+.+|++++.++...+++.+. ....
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~------k~~d 91 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE------KAGD 91 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--------SCHH
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh------hHHH
Confidence 456899999999999998876665532 233366899999999999999999999999999988875432 1223
Q ss_pred HHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC----------------CCCeEEEEEc
Q psy450 282 IRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT----------------SQDVFILGAT 345 (478)
Q Consensus 282 ~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~----------------~~~v~vI~tt 345 (478)
+..++.... ...||||||||++. ......|+..|+...- -+++.+|++|
T Consensus 92 l~~il~~l~--~~~ILFIDEIHRln-------------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligAT 156 (233)
T PF05496_consen 92 LAAILTNLK--EGDILFIDEIHRLN-------------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGAT 156 (233)
T ss_dssp HHHHHHT----TT-EEEECTCCC---------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEE
T ss_pred HHHHHHhcC--CCcEEEEechhhcc-------------HHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeee
Confidence 334444443 34699999999997 3445556666654321 1358899999
Q ss_pred CCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCC-CHHHHHHhcCCCCCHHHHHHHH
Q psy450 346 NRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDV-SLDSLVHHFPSQMSGADIYSIC 415 (478)
Q Consensus 346 n~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~sg~di~~l~ 415 (478)
++...+.++++. ||.....+.. .+.++..+|++...+.+++.-+. ...++|+++ .-+++---.++
T Consensus 157 Tr~g~ls~pLrd--RFgi~~~l~~-Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rs--rGtPRiAnrll 222 (233)
T PF05496_consen 157 TRAGLLSSPLRD--RFGIVLRLEF-YSEEELAKIVKRSARILNIEIDEDAAEEIARRS--RGTPRIANRLL 222 (233)
T ss_dssp SSGCCTSHCCCT--TSSEEEE-----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCT--TTSHHHHHHHH
T ss_pred ccccccchhHHh--hcceecchhc-CCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhc--CCChHHHHHHH
Confidence 999999999999 9999888887 58999999998777666655332 266777775 34564333333
No 73
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.83 E-value=9.4e-20 Score=183.60 Aligned_cols=158 Identities=15% Similarity=0.239 Sum_probs=133.5
Q ss_pred HHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhhc
Q psy450 18 HLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQC 84 (478)
Q Consensus 18 ~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~~ 84 (478)
.++++|.++... .++.+|. .|+..+||||||||+|++++.| .+.++++++|++
T Consensus 200 ~l~~~~~g~~~~-~i~~~f~-~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~------------ 265 (389)
T PRK03992 200 ELVQKFIGEGAR-LVRELFE-LAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF------------ 265 (389)
T ss_pred HHhHhhccchHH-HHHHHHH-HHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc------------
Confidence 345666666544 8999999 9999999999999999998654 356677777753
Q ss_pred cCCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHH
Q psy450 85 KQQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLT 155 (478)
Q Consensus 85 ~~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~ 155 (478)
...++|.||+ +|+|++| |||+.|+|+.|+.++|.+||+.++.++ ++..+.++ ..++..|+||+|+|++
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~--~~~~~~~~-~~la~~t~g~sgadl~ 342 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM--NLADDVDL-EELAELTEGASGADLK 342 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC--CCCCcCCH-HHHHHHcCCCCHHHHH
Confidence 4455688888 9999999 999999999999999999999999877 56667787 9999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhcccC
Q psy450 156 CLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQSRYSDQ 195 (478)
Q Consensus 156 ~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~~~~~~ 195 (478)
.+|++|+..++++ ....|+.+||..|+..++++..+.
T Consensus 343 ~l~~eA~~~a~~~---~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 343 AICTEAGMFAIRD---DRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred HHHHHHHHHHHHc---CCCCcCHHHHHHHHHHHhcccccc
Confidence 9999999999865 456799999999999998766544
No 74
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.82 E-value=9.2e-19 Score=191.02 Aligned_cols=228 Identities=21% Similarity=0.325 Sum_probs=162.2
Q ss_pred ccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh---------hhhhcc
Q psy450 207 EDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL---------NKYIGQ 277 (478)
Q Consensus 207 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~---------~~~~g~ 277 (478)
+++.|++++++.+.+.+..........+.+++|+||||||||++|+++|+.++.+++.+++.... ..|.|.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~ 399 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGA 399 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCC
Confidence 35899999999999987766444333455799999999999999999999999999998764332 245666
Q ss_pred hHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC-----CC--------CCCCeEEEEE
Q psy450 278 SEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG-----VH--------TSQDVFILGA 344 (478)
Q Consensus 278 ~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~--------~~~~v~vI~t 344 (478)
....+.+.|..+....| ||+|||||.+.+...+ + ..+.|+..++. +. +.+++++|+|
T Consensus 400 ~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~--~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~T 469 (775)
T TIGR00763 400 MPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG--D-------PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIAT 469 (775)
T ss_pred CCchHHHHHHHhCcCCC-EEEEechhhcCCccCC--C-------HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEe
Confidence 67777788888766666 8999999999853211 1 12344544442 11 1247899999
Q ss_pred cCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHH-----hcCCCC------CCCCHHHHHHhcCCCCCHHHHHH
Q psy450 345 TNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVV-----RKFKLS------DDVSLDSLVHHFPSQMSGADIYS 413 (478)
Q Consensus 345 tn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~-----~~~~~~------~~~~~~~la~~~~~~~sg~di~~ 413 (478)
||.++.+++++++ ||. .+.++. ++.+++..|++.++ +..++. .+..+..+++.++..+..++|+.
T Consensus 470 tN~~~~i~~~L~~--R~~-vi~~~~-~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r 545 (775)
T TIGR00763 470 ANSIDTIPRPLLD--RME-VIELSG-YTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLER 545 (775)
T ss_pred cCCchhCCHHHhC--Cee-EEecCC-CCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHH
Confidence 9999999999999 995 778876 68899999998765 222221 11236667776666677788888
Q ss_pred HHHHHHHHHHHHHHhcCCC--CCCCCccccHHHHHhc
Q psy450 414 ICSNAWTRAIRRIITSAPQ--VKSAPVIVTMDDFLGA 448 (478)
Q Consensus 414 l~~~a~~~a~~r~~~~~~~--~~~~~~~it~~d~~~A 448 (478)
.+...+..+..+....+.. .......++.+++..-
T Consensus 546 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~ 582 (775)
T TIGR00763 546 QIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKY 582 (775)
T ss_pred HHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHh
Confidence 8888887777666532211 1122357888888777
No 75
>KOG0729|consensus
Probab=99.82 E-value=2.2e-20 Score=169.12 Aligned_cols=163 Identities=10% Similarity=0.186 Sum_probs=138.3
Q ss_pred HHHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccchh-------------hHhhhccccccccccccchhhh
Q psy450 17 SHLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVKY-------------VYFKLCSFDSVNVKSNETKDQQ 83 (478)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r~-------------~~~~l~~~d~~~~~~~~~~~~~ 83 (478)
+.|+.+|.++... .+|.+|. .|+..+.|||||||||++++.|+ .-.+++++| |
T Consensus 245 selvqkyvgegar-mvrelf~-martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qld------------g 310 (435)
T KOG0729|consen 245 SELVQKYVGEGAR-MVRELFE-MARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLD------------G 310 (435)
T ss_pred HHHHHHHhhhhHH-HHHHHHH-HhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhcc------------C
Confidence 4567788777655 9999999 99999999999999999999982 234456666 5
Q ss_pred ccCCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHH
Q psy450 84 CKQQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDL 154 (478)
Q Consensus 84 ~~~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di 154 (478)
++.++++-|+- +|||++| |.|+.++|.+||.+.|..|++.+.+.+ ....++.| +-+|.++.+-+|++|
T Consensus 311 fdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksm--sverdir~-ellarlcpnstgaei 387 (435)
T KOG0729|consen 311 FDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSM--SVERDIRF-ELLARLCPNSTGAEI 387 (435)
T ss_pred CCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEecccc--ccccchhH-HHHHhhCCCCcchHH
Confidence 57788877766 9999999 999999999999999999999999998 66778888 999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhcccCCCCC
Q psy450 155 TCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQSRYSDQLDAP 199 (478)
Q Consensus 155 ~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~~~~~~~~~~ 199 (478)
+.+|.+|.+.+++. .....|+.||..|...+.....+....+
T Consensus 388 rsvcteagmfaira---rrk~atekdfl~av~kvvkgy~kfsatp 429 (435)
T KOG0729|consen 388 RSVCTEAGMFAIRA---RRKVATEKDFLDAVNKVVKGYAKFSATP 429 (435)
T ss_pred HHHHHHhhHHHHHH---HhhhhhHHHHHHHHHHHHHHHHhccCCc
Confidence 99999999999865 3456789999999998877665544433
No 76
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.81 E-value=1.7e-19 Score=181.93 Aligned_cols=153 Identities=12% Similarity=0.207 Sum_probs=129.6
Q ss_pred HHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhhcc
Q psy450 19 LLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQCK 85 (478)
Q Consensus 19 ~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~~~ 85 (478)
++++|.++.. ..++.+|. .|+..+||||||||+|+++.+| .+..+|.+||++ .
T Consensus 253 L~~k~~Ge~~-~~vr~lF~-~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~------------~ 318 (438)
T PTZ00361 253 LIQKYLGDGP-KLVRELFR-VAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF------------D 318 (438)
T ss_pred hhhhhcchHH-HHHHHHHH-HHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh------------c
Confidence 4556665554 48999999 9999999999999999998755 345677777753 4
Q ss_pred CCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHH
Q psy450 86 QQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTC 156 (478)
Q Consensus 86 ~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~ 156 (478)
...+|.||+ +|||++| |||++|+|+.||.++|.+||+.+++++ .+..++++ +.++..|+||||+||+.
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~--~l~~dvdl-~~la~~t~g~sgAdI~~ 395 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM--TLAEDVDL-EEFIMAKDELSGADIKA 395 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC--CCCcCcCH-HHHHHhcCCCCHHHHHH
Confidence 445677777 9999998 999999999999999999999999888 66778888 99999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhh
Q psy450 157 LVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQSR 191 (478)
Q Consensus 157 l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~~ 191 (478)
+|++|+..|.++ +...|+.+||..|+..+...
T Consensus 396 i~~eA~~~Alr~---~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 396 ICTEAGLLALRE---RRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred HHHHHHHHHHHh---cCCccCHHHHHHHHHHHHhh
Confidence 999999999865 46789999999999987543
No 77
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.80 E-value=6e-19 Score=183.82 Aligned_cols=151 Identities=16% Similarity=0.192 Sum_probs=128.3
Q ss_pred HHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhhccC
Q psy450 20 LTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQCKQ 86 (478)
Q Consensus 20 ~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~~~~ 86 (478)
.+.|.+.. ...++++|+ .|+..+||||||||+|+++.+| .++++|.+||++ ..
T Consensus 125 ~~~~~g~~-~~~l~~~f~-~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~------------~~ 190 (495)
T TIGR01241 125 VEMFVGVG-ASRVRDLFE-QAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF------------GT 190 (495)
T ss_pred HHHHhccc-HHHHHHHHH-HHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc------------cC
Confidence 34444444 448999999 9999999999999999998654 577888889864 44
Q ss_pred CCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHH
Q psy450 87 QHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCL 157 (478)
Q Consensus 87 ~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l 157 (478)
.++|+||| +|||++| |||+.|+|+.||.++|.+||+.+++.. ++..+.++ ..++..|.||||+||+.+
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~--~~~~~~~l-~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK--KLAPDVDL-KAVARRTPGFSGADLANL 267 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC--CCCcchhH-HHHHHhCCCCCHHHHHHH
Confidence 56688888 9999999 999999999999999999999999876 45567777 999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhh
Q psy450 158 VRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQS 190 (478)
Q Consensus 158 ~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~ 190 (478)
|++|+..+.++ +...++.+||..|+.....
T Consensus 268 ~~eA~~~a~~~---~~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 268 LNEAALLAARK---NKTEITMNDIEEAIDRVIA 297 (495)
T ss_pred HHHHHHHHHHc---CCCCCCHHHHHHHHHHHhc
Confidence 99998887654 4578999999999998764
No 78
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.80 E-value=5e-19 Score=188.74 Aligned_cols=150 Identities=16% Similarity=0.183 Sum_probs=130.2
Q ss_pred hhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhhccCCC
Q psy450 22 NYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQCKQQH 88 (478)
Q Consensus 22 ~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 88 (478)
.|.+. .+..++.+|. .|++.+||||||||+|+++..| .++++|.+||++ ..+.
T Consensus 224 ~~~g~-~~~~~~~~f~-~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~------------~~~~ 289 (644)
T PRK10733 224 MFVGV-GASRVRDMFE-QAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF------------EGNE 289 (644)
T ss_pred hhhcc-cHHHHHHHHH-HHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcc------------cCCC
Confidence 34444 4558999999 9999999999999999998654 678899999964 4566
Q ss_pred cEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHH
Q psy450 89 KKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVR 159 (478)
Q Consensus 89 ~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~ 159 (478)
+|+||| +|||++| |||+.|+|++||.++|.+||+.++++. ++..+.++ ..+++.|.||||+||.++|+
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~--~l~~~~d~-~~la~~t~G~sgadl~~l~~ 366 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV--PLAPDIDA-AIIARGTPGFSGADLANLVN 366 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC--CCCCcCCH-HHHHhhCCCCCHHHHHHHHH
Confidence 788888 9999999 999999999999999999999999887 66777887 99999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhh
Q psy450 160 LSVKNKMLKQGINKRDLQKEDFQQIYDDLQSR 191 (478)
Q Consensus 160 ~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~~ 191 (478)
+|+..+.++ +...++..||..|+..+...
T Consensus 367 eAa~~a~r~---~~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 367 EAALFAARG---NKRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred HHHHHHHHc---CCCcccHHHHHHHHHHHhcc
Confidence 999998864 56789999999999987543
No 79
>KOG0740|consensus
Probab=99.80 E-value=2.4e-19 Score=176.56 Aligned_cols=163 Identities=18% Similarity=0.256 Sum_probs=135.5
Q ss_pred HHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch----------hhHhhhccccccccccccchhhhccCC
Q psy450 18 HLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK----------YVYFKLCSFDSVNVKSNETKDQQCKQQ 87 (478)
Q Consensus 18 ~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r----------~~~~~l~~~d~~~~~~~~~~~~~~~~~ 87 (478)
.|.++|-|+. +..+|.+|+ .|++.+|+|+||||+|+++..| ...++|-++|+... ...
T Consensus 221 sLtsK~~Ge~-eK~vralf~-vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s----------~~~ 288 (428)
T KOG0740|consen 221 SLTSKYVGES-EKLVRALFK-VARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNS----------APD 288 (428)
T ss_pred HhhhhccChH-HHHHHHHHH-HHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccC----------CCC
Confidence 4455555555 669999999 9999999999999999999887 57778888887543 345
Q ss_pred CcEEEEe-------eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHH
Q psy450 88 HKKKLVL-------IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRL 160 (478)
Q Consensus 88 ~~v~via-------ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~ 160 (478)
++|+||| +|.|++|||.+.++||+||.++|..+|+.++.+.+..+ .+.++ +.+++.|+||||+||..+|++
T Consensus 289 drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l-~~~d~-~~l~~~Tegysgsdi~~l~ke 366 (428)
T KOG0740|consen 289 DRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGL-SDLDI-SLLAKVTEGYSGSDITALCKE 366 (428)
T ss_pred CeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCc-cHHHH-HHHHHHhcCcccccHHHHHHH
Confidence 6899999 99999999999999999999999999999997763222 33555 999999999999999999999
Q ss_pred HHHHHHHhhc----------CCCCCCCHHHHHHHHHHhhhhccc
Q psy450 161 SVKNKMLKQG----------INKRDLQKEDFQQIYDDLQSRYSD 194 (478)
Q Consensus 161 a~~~a~~~~~----------~~~~~it~~d~~~a~~~~~~~~~~ 194 (478)
|+....+... ...++++..||..+++.++++...
T Consensus 367 a~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~ 410 (428)
T KOG0740|consen 367 AAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSVSL 410 (428)
T ss_pred hhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccccCc
Confidence 9997765421 246789999999999999876543
No 80
>CHL00176 ftsH cell division protein; Validated
Probab=99.77 E-value=3.8e-18 Score=180.00 Aligned_cols=144 Identities=17% Similarity=0.202 Sum_probs=125.1
Q ss_pred cchhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhhccCCCcEEEEe
Q psy450 28 RYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL 94 (478)
Q Consensus 28 ~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via 94 (478)
....++.+|. .|+..+||||||||+|+++..| .++++|.+||+. ..+.+|+|||
T Consensus 260 ~~~~vr~lF~-~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~------------~~~~~ViVIa 326 (638)
T CHL00176 260 GAARVRDLFK-KAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGF------------KGNKGVIVIA 326 (638)
T ss_pred hHHHHHHHHH-HHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccc------------cCCCCeeEEE
Confidence 4458999999 9999999999999999998543 578889999854 4456788888
Q ss_pred -------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy450 95 -------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNK 165 (478)
Q Consensus 95 -------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a 165 (478)
+|||++| |||+.|+|++|+.++|.+||+.+++.. .+..+.++ ..+|..|.||+|+||+.++++|+..+
T Consensus 327 aTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~--~~~~d~~l-~~lA~~t~G~sgaDL~~lvneAal~a 403 (638)
T CHL00176 327 ATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK--KLSPDVSL-ELIARRTPGFSGADLANLLNEAAILT 403 (638)
T ss_pred ecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc--ccchhHHH-HHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 8999999 999999999999999999999999875 55667777 99999999999999999999999887
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHhhh
Q psy450 166 MLKQGINKRDLQKEDFQQIYDDLQS 190 (478)
Q Consensus 166 ~~~~~~~~~~it~~d~~~a~~~~~~ 190 (478)
.++ +...++.+||..|+.++..
T Consensus 404 ~r~---~~~~It~~dl~~Ai~rv~~ 425 (638)
T CHL00176 404 ARR---KKATITMKEIDTAIDRVIA 425 (638)
T ss_pred HHh---CCCCcCHHHHHHHHHHHHh
Confidence 654 5677999999999998743
No 81
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.77 E-value=2.8e-17 Score=162.66 Aligned_cols=213 Identities=19% Similarity=0.240 Sum_probs=147.0
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHH
Q psy450 202 PNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEEN 281 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~ 281 (478)
.+.+|++++|+++.++.+...+...... +.++.+++|+||||||||++|+++|++++..+..++++.+. ....
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~------~~~~ 92 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKR-GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE------KPGD 92 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhc-CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc------ChHH
Confidence 3458999999999999999887655332 33467899999999999999999999999988777654331 1223
Q ss_pred HHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhh------cCCC-------CCCCeEEEEEcCCC
Q psy450 282 IRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEM------DGVH-------TSQDVFILGATNRV 348 (478)
Q Consensus 282 ~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l------~~~~-------~~~~v~vI~ttn~~ 348 (478)
+..++... ..+++|||||+|.+.... .+.+...+... +.-. .-.++.+|++||++
T Consensus 93 l~~~l~~l--~~~~vl~IDEi~~l~~~~----------~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~ 160 (328)
T PRK00080 93 LAAILTNL--EEGDVLFIDEIHRLSPVV----------EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRA 160 (328)
T ss_pred HHHHHHhc--ccCCEEEEecHhhcchHH----------HHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCc
Confidence 44444443 345799999999986321 12222222211 0000 11347889999999
Q ss_pred CCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy450 349 DLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDV-SLDSLVHHFPSQMSGADIYSICSNAWTRAIRRII 427 (478)
Q Consensus 349 ~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~ 427 (478)
..+++++++ ||...+.++. ++.+++.+|++......++.-+. .+..++..+ .| +++.+..+++.+...+..+.
T Consensus 161 ~~l~~~L~s--Rf~~~~~l~~-~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~-~G-~pR~a~~~l~~~~~~a~~~~- 234 (328)
T PRK00080 161 GLLTSPLRD--RFGIVQRLEF-YTVEELEKIVKRSARILGVEIDEEGALEIARRS-RG-TPRIANRLLRRVRDFAQVKG- 234 (328)
T ss_pred ccCCHHHHH--hcCeeeecCC-CCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHc-CC-CchHHHHHHHHHHHHHHHcC-
Confidence 999999998 9988889986 78999999999887766544322 277788877 44 44667777776665544331
Q ss_pred hcCCCCCCCCccccHHHHHhc
Q psy450 428 TSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 428 ~~~~~~~~~~~~it~~d~~~A 448 (478)
...|+.+++..+
T Consensus 235 ---------~~~I~~~~v~~~ 246 (328)
T PRK00080 235 ---------DGVITKEIADKA 246 (328)
T ss_pred ---------CCCCCHHHHHHH
Confidence 235777777777
No 82
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.76 E-value=6.5e-17 Score=158.78 Aligned_cols=207 Identities=21% Similarity=0.258 Sum_probs=140.7
Q ss_pred CcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHHHHH
Q psy450 205 SWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRN 284 (478)
Q Consensus 205 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~ 284 (478)
+|++++|++++++.|...+...... +..+.+++|+||||||||++|+++|++++.++..+.++... ....+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~------~~~~l~~ 74 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALE------KPGDLAA 74 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhc------CchhHHH
Confidence 6899999999999998887654332 22366799999999999999999999999887766544321 1122333
Q ss_pred HHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC----------------CCCCeEEEEEcCCC
Q psy450 285 VFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH----------------TSQDVFILGATNRV 348 (478)
Q Consensus 285 ~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~v~vI~ttn~~ 348 (478)
.+... ..+.+|||||+|.+.+. ....|...++... ...++.+|++||++
T Consensus 75 ~l~~~--~~~~vl~iDEi~~l~~~-------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~ 139 (305)
T TIGR00635 75 ILTNL--EEGDVLFIDEIHRLSPA-------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA 139 (305)
T ss_pred HHHhc--ccCCEEEEehHhhhCHH-------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc
Confidence 33332 34579999999998742 1122333322111 12347899999999
Q ss_pred CCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy450 349 DLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRII 427 (478)
Q Consensus 349 ~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~ 427 (478)
..+++++++ ||...+.++. ++.++..++++.......+.-+ ..++.+++.+ .|+. +.+..++..++..|....
T Consensus 140 ~~l~~~l~s--R~~~~~~l~~-l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~-~G~p-R~~~~ll~~~~~~a~~~~- 213 (305)
T TIGR00635 140 GMLTSPLRD--RFGIILRLEF-YTVEELAEIVSRSAGLLNVEIEPEAALEIARRS-RGTP-RIANRLLRRVRDFAQVRG- 213 (305)
T ss_pred cccCHHHHh--hcceEEEeCC-CCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh-CCCc-chHHHHHHHHHHHHHHcC-
Confidence 999999999 9988888986 6888999999887765544322 2366788776 5544 566677776654443221
Q ss_pred hcCCCCCCCCccccHHHHHhc
Q psy450 428 TSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 428 ~~~~~~~~~~~~it~~d~~~A 448 (478)
...+|.+++.++
T Consensus 214 ---------~~~it~~~v~~~ 225 (305)
T TIGR00635 214 ---------QKIINRDIALKA 225 (305)
T ss_pred ---------CCCcCHHHHHHH
Confidence 234677777776
No 83
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.75 E-value=1.2e-16 Score=146.90 Aligned_cols=198 Identities=19% Similarity=0.298 Sum_probs=142.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHH
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEE 280 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~ 280 (478)
..+..|++.+|++++|++|.-.+..... .+....|+||+||||.||||||+.+|+++|.++...+++.+. ...
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le------K~g 92 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE------KPG 92 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc------Chh
Confidence 3456799999999999999887776643 344478999999999999999999999999998888776552 233
Q ss_pred HHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhh--c---C--CC------CCCCeEEEEEcCC
Q psy450 281 NIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEM--D---G--VH------TSQDVFILGATNR 347 (478)
Q Consensus 281 ~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l--~---~--~~------~~~~v~vI~ttn~ 347 (478)
-+..++.....+ +|+||||||++.+.. .++++--+.-+ | | .. +-+++.+|++|.+
T Consensus 93 DlaaiLt~Le~~--DVLFIDEIHrl~~~v----------EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr 160 (332)
T COG2255 93 DLAAILTNLEEG--DVLFIDEIHRLSPAV----------EEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTR 160 (332)
T ss_pred hHHHHHhcCCcC--CeEEEehhhhcChhH----------HHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccc
Confidence 444555555444 699999999998532 34444333211 1 1 00 1246889999999
Q ss_pred CCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy450 348 VDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDV-SLDSLVHHFPSQMSGADIYSICSNAWTRA 422 (478)
Q Consensus 348 ~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~sg~di~~l~~~a~~~a 422 (478)
...+...|+. ||.....+.. .+.++...|++...+.+++.-+. ...++|++. . -|++=--.++++..-.|
T Consensus 161 ~G~lt~PLrd--RFGi~~rlef-Y~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rS-R-GTPRIAnRLLrRVRDfa 231 (332)
T COG2255 161 AGMLTNPLRD--RFGIIQRLEF-YTVEELEEIVKRSAKILGIEIDEEAALEIARRS-R-GTPRIANRLLRRVRDFA 231 (332)
T ss_pred cccccchhHH--hcCCeeeeec-CCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhc-c-CCcHHHHHHHHHHHHHH
Confidence 9999999999 9999999987 58999999998887777765443 367778775 3 35543334444444333
No 84
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.74 E-value=2.3e-17 Score=165.62 Aligned_cols=150 Identities=15% Similarity=0.221 Sum_probs=124.9
Q ss_pred HHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhhcc
Q psy450 19 LLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQCK 85 (478)
Q Consensus 19 ~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~~~ 85 (478)
+.++|+++.. ..++.+|+ .|+..+|+||||||+|+++..| .+.+++.++|++ .
T Consensus 192 l~~~~~g~~~-~~i~~~f~-~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~------------~ 257 (364)
T TIGR01242 192 LVRKYIGEGA-RLVREIFE-LAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF------------D 257 (364)
T ss_pred HHHHhhhHHH-HHHHHHHH-HHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC------------C
Confidence 3455555544 47899999 9999999999999999997653 355666666643 3
Q ss_pred CCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHH
Q psy450 86 QQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTC 156 (478)
Q Consensus 86 ~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~ 156 (478)
..++|.||+ +|++++| |||+.|+|+.|+.++|.+||+.++.+. .+..+.++ +.++..|+||+|+|++.
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~--~l~~~~~~-~~la~~t~g~sg~dl~~ 334 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM--KLAEDVDL-EAIAKMTEGASGADLKA 334 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC--CCCccCCH-HHHHHHcCCCCHHHHHH
Confidence 445677777 8999998 999999999999999999999999877 55566777 99999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHh
Q psy450 157 LVRLSVKNKMLKQGINKRDLQKEDFQQIYDDL 188 (478)
Q Consensus 157 l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~ 188 (478)
+|++|...++++ +...|+.+||..|+..+
T Consensus 335 l~~~A~~~a~~~---~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 335 ICTEAGMFAIRE---ERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHHHHHHHh---CCCccCHHHHHHHHHHh
Confidence 999999999865 56789999999998864
No 85
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.2e-16 Score=158.32 Aligned_cols=224 Identities=22% Similarity=0.326 Sum_probs=155.2
Q ss_pred ccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh---------hhhhcc
Q psy450 207 EDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL---------NKYIGQ 277 (478)
Q Consensus 207 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~---------~~~~g~ 277 (478)
.+-.|++++|+++.+.+.-.....+.+..-++|+||||+|||++++.||+.++..|+.++...+. .-|+|.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGa 402 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGA 402 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccccccccc
Confidence 46789999999999998877766666667788999999999999999999999999999864332 338899
Q ss_pred hHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCC-------------CCCCCeEEEEE
Q psy450 278 SEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGV-------------HTSQDVFILGA 344 (478)
Q Consensus 278 ~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~-------------~~~~~v~vI~t 344 (478)
....+-+-+.++...+| +++|||||++...- .++.+ +.||..+|.- -+-++|++|+|
T Consensus 403 mPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~--rGDPa-------SALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaT 472 (782)
T COG0466 403 MPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF--RGDPA-------SALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIAT 472 (782)
T ss_pred CChHHHHHHHHhCCcCC-eEEeechhhccCCC--CCChH-------HHHHhhcCHhhcCchhhccccCccchhheEEEee
Confidence 99999999999999998 89999999998532 11111 2344433321 11346999999
Q ss_pred cCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHH-----hcCCCCC------CCCHHHHHHhcCCCCCHHHHHH
Q psy450 345 TNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVV-----RKFKLSD------DVSLDSLVHHFPSQMSGADIYS 413 (478)
Q Consensus 345 tn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~-----~~~~~~~------~~~~~~la~~~~~~~sg~di~~ 413 (478)
+|..+.+|.+|+. |+ ..|.+.- .+.+++.+|.+.++ +..++.. +.-+..+.+.+|..---+.+..
T Consensus 473 ANsl~tIP~PLlD--RM-EiI~lsg-Yt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR 548 (782)
T COG0466 473 ANSLDTIPAPLLD--RM-EVIRLSG-YTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLER 548 (782)
T ss_pred cCccccCChHHhc--ce-eeeeecC-CChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHH
Confidence 9999999999999 98 5777876 58899999998776 2223321 1225566665532211233443
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCC-ccccHHHHHhc
Q psy450 414 ICSNAWTRAIRRIITSAPQVKSAP-VIVTMDDFLGA 448 (478)
Q Consensus 414 l~~~a~~~a~~r~~~~~~~~~~~~-~~it~~d~~~A 448 (478)
-+...++.++....... ... ..++..++.+=
T Consensus 549 ~i~ki~RK~~~~i~~~~----~k~~~~i~~~~l~~y 580 (782)
T COG0466 549 EIAKICRKAAKKILLKK----EKSIVKIDEKNLKKY 580 (782)
T ss_pred HHHHHHHHHHHHHHhcC----cccceeeCHHHHHHH
Confidence 34444444444443321 112 35666666554
No 86
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.72 E-value=9.8e-17 Score=174.30 Aligned_cols=227 Identities=20% Similarity=0.262 Sum_probs=155.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh----------CCcEEEEechhhh-
Q psy450 203 NVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC----------RMNFLAVKGPELL- 271 (478)
Q Consensus 203 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~----------~~~~~~v~~~~l~- 271 (478)
+-.+++++|.++...++.+.+... ...+++|+||||||||++++++|+.+ +.+++.+++..+.
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a 251 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLA 251 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhh
Confidence 346789999999988777655322 25679999999999999999999987 7789999988887
Q ss_pred -hhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC-
Q psy450 272 -NKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD- 349 (478)
Q Consensus 272 -~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~- 349 (478)
.+|.|+.+..++.+|+.+....++||||||+|.+.+.+...+.+ ....+.|...+. ++.+.+|++||..+
T Consensus 252 ~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~----~~~~~~L~~~l~----~g~i~~IgaTt~~e~ 323 (731)
T TIGR02639 252 GTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS----MDASNLLKPALS----SGKLRCIGSTTYEEY 323 (731)
T ss_pred hccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc----HHHHHHHHHHHh----CCCeEEEEecCHHHH
Confidence 46889999999999999987788999999999998654321111 112233333333 46789999999643
Q ss_pred ----CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCC----CC-CCCCHHHHHHhcCCCCC-----HHHHHHHH
Q psy450 350 ----LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFK----LS-DDVSLDSLVHHFPSQMS-----GADIYSIC 415 (478)
Q Consensus 350 ----~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~----~~-~~~~~~~la~~~~~~~s-----g~di~~l~ 415 (478)
..|+++.| ||. .+.++. |+.+++..|++....... +. .+..+..++... ..|- +..--.++
T Consensus 324 ~~~~~~d~al~r--Rf~-~i~v~~-p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls-~ryi~~r~~P~kai~ll 398 (731)
T TIGR02639 324 KNHFEKDRALSR--RFQ-KIDVGE-PSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELS-ARYINDRFLPDKAIDVI 398 (731)
T ss_pred HHHhhhhHHHHH--hCc-eEEeCC-CCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhh-hcccccccCCHHHHHHH
Confidence 47999999 997 689986 799999999987665432 11 112244444433 3333 33334555
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccccHHHHHhchhccCC
Q psy450 416 SNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGACSLATA 454 (478)
Q Consensus 416 ~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A~~~~~~ 454 (478)
.+|+....-+. .......||.+|+..+++.-++
T Consensus 399 d~a~a~~~~~~------~~~~~~~v~~~~i~~~i~~~tg 431 (731)
T TIGR02639 399 DEAGASFRLRP------KAKKKANVSVKDIENVVAKMAH 431 (731)
T ss_pred HHhhhhhhcCc------ccccccccCHHHHHHHHHHHhC
Confidence 65553221110 0012346999999999444433
No 87
>KOG0651|consensus
Probab=99.71 E-value=3.8e-18 Score=158.10 Aligned_cols=153 Identities=14% Similarity=0.234 Sum_probs=130.4
Q ss_pred HHHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhh
Q psy450 17 SHLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQ 83 (478)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~ 83 (478)
+.+.++|.|++.. -+|+.|. .|+...|||||+||||++++.| .+-.++++||+
T Consensus 200 s~lv~kyiGEsaR-lIRemf~-yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdg------------ 265 (388)
T KOG0651|consen 200 SALVDKYIGESAR-LIRDMFR-YAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDG------------ 265 (388)
T ss_pred hhhhhhhcccHHH-HHHHHHH-HHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhcc------------
Confidence 5678899998877 9999999 9999999999999999999987 24455667774
Q ss_pred ccCCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHH
Q psy450 84 CKQQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDL 154 (478)
Q Consensus 84 ~~~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di 154 (478)
.+..++|-+|. +||||+| |.|+.+++|+|+...|..|++.+...+ ....+.+. +.+.+.++||+|+|+
T Consensus 266 fd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i--~~~Geid~-eaivK~~d~f~gad~ 342 (388)
T KOG0651|consen 266 FDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPI--DFHGEIDD-EAILKLVDGFNGADL 342 (388)
T ss_pred chhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccc--cccccccH-HHHHHHHhccChHHH
Confidence 46666776666 9999999 999999999999999999999999887 66677888 999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhh
Q psy450 155 TCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQ 189 (478)
Q Consensus 155 ~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~ 189 (478)
++.|++|-+-++.+ ....+-++||-.+..+..
T Consensus 343 rn~~tEag~Fa~~~---~~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 343 RNVCTEAGMFAIPE---ERDEVLHEDFMKLVRKQA 374 (388)
T ss_pred hhhcccccccccch---hhHHHhHHHHHHHHHHHH
Confidence 99999999776643 455677888888877664
No 88
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.71 E-value=3.3e-16 Score=169.42 Aligned_cols=223 Identities=19% Similarity=0.312 Sum_probs=156.4
Q ss_pred cccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh---------hhhhcch
Q psy450 208 DIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL---------NKYIGQS 278 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~---------~~~~g~~ 278 (478)
+..|++++|+++.+.+.............++|+||||+|||++++.+|+.++.+++.++..... ..|.|..
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~ 402 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSM 402 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCC
Confidence 5899999999999887765443333455699999999999999999999999999988765432 2355656
Q ss_pred HHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCC-------------CCCCCeEEEEEc
Q psy450 279 EENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGV-------------HTSQDVFILGAT 345 (478)
Q Consensus 279 ~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~-------------~~~~~v~vI~tt 345 (478)
...+.+.+..+...+| |++|||+|++..... + .....|+..+|.- .+-+++++|+|+
T Consensus 403 ~G~~~~~l~~~~~~~~-villDEidk~~~~~~------g---~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~Ta 472 (784)
T PRK10787 403 PGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR------G---DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATS 472 (784)
T ss_pred CcHHHHHHHhcCCCCC-EEEEEChhhcccccC------C---CHHHHHHHHhccccEEEEecccccccccCCceEEEEcC
Confidence 5666666666655555 899999999975421 1 1234555555421 123679999999
Q ss_pred CCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHh-----cCCCCC------CCCHHHHHHhcCCCCCHHHHHHH
Q psy450 346 NRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVR-----KFKLSD------DVSLDSLVHHFPSQMSGADIYSI 414 (478)
Q Consensus 346 n~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~-----~~~~~~------~~~~~~la~~~~~~~sg~di~~l 414 (478)
|.. .++++|++ ||. .+.+.. ++.++..+|.+.++. ..++.. +.-+..+++.++..+-.+.++..
T Consensus 473 N~~-~i~~aLl~--R~~-ii~~~~-~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~ 547 (784)
T PRK10787 473 NSM-NIPAPLLD--RME-VIRLSG-YTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLERE 547 (784)
T ss_pred CCC-CCCHHHhc--cee-eeecCC-CCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHH
Confidence 987 49999999 995 566664 689999999977763 111111 11266666666666667888888
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 415 CSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 415 ~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
+...+..++.+..... ......|+.+++.+-
T Consensus 548 I~~i~r~~l~~~~~~~---~~~~v~v~~~~~~~~ 578 (784)
T PRK10787 548 ISKLCRKAVKQLLLDK---SLKHIEINGDNLHDY 578 (784)
T ss_pred HHHHHHHHHHHHHhcC---CCceeeecHHHHHHH
Confidence 8888888777765332 123457888888877
No 89
>KOG2004|consensus
Probab=99.70 E-value=9e-16 Score=156.29 Aligned_cols=164 Identities=24% Similarity=0.389 Sum_probs=127.9
Q ss_pred ccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh---------hhhhcc
Q psy450 207 EDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL---------NKYIGQ 277 (478)
Q Consensus 207 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~---------~~~~g~ 277 (478)
+|-.|++++|+++.+++.--.-+....+.-+.|+||||+|||++++.||..++..|+.++...+. .-|+|.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGA 490 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGA 490 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeecc
Confidence 56799999999999987765444344466788999999999999999999999999999864432 238888
Q ss_pred hHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC-------------CCCCCCeEEEEE
Q psy450 278 SEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG-------------VHTSQDVFILGA 344 (478)
Q Consensus 278 ~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~-------------~~~~~~v~vI~t 344 (478)
....+-+.+......+| +++|||+|++.. +..++.+ ..||..+|. .-+-.+|++|||
T Consensus 491 MPGkiIq~LK~v~t~NP-liLiDEvDKlG~--g~qGDPa-------sALLElLDPEQNanFlDHYLdVp~DLSkVLFicT 560 (906)
T KOG2004|consen 491 MPGKIIQCLKKVKTENP-LILIDEVDKLGS--GHQGDPA-------SALLELLDPEQNANFLDHYLDVPVDLSKVLFICT 560 (906)
T ss_pred CChHHHHHHHhhCCCCc-eEEeehhhhhCC--CCCCChH-------HHHHHhcChhhccchhhhccccccchhheEEEEe
Confidence 89999999999998998 899999999982 2233222 233333332 112357999999
Q ss_pred cCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHH
Q psy450 345 TNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVV 384 (478)
Q Consensus 345 tn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~ 384 (478)
+|..+.++++|+. |+ ..|.++- ...+++.+|.+.++
T Consensus 561 AN~idtIP~pLlD--RM-EvIelsG-Yv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 561 ANVIDTIPPPLLD--RM-EVIELSG-YVAEEKVKIAERYL 596 (906)
T ss_pred ccccccCChhhhh--hh-heeeccC-ccHHHHHHHHHHhh
Confidence 9999999999999 98 5777776 58899999998776
No 90
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.70 E-value=3.2e-16 Score=150.89 Aligned_cols=148 Identities=24% Similarity=0.391 Sum_probs=107.2
Q ss_pred CCCCCcccccCcHHHHHH---HHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcc
Q psy450 201 VPNVSWEDIGGLSKLKAE---ILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQ 277 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~---l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~ 277 (478)
..+.++++++|+++.... |.+++..- ...+++|||||||||||+|+.||...+.+|..++.. -.
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~~~------~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv-------~~ 84 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVEAG------HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV-------TS 84 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHhcC------CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc-------cc
Confidence 346789999999887633 33333211 145699999999999999999999999999999863 34
Q ss_pred hHHHHHHHHHHhHhC----CCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEc-CCC-CCC
Q psy450 278 SEENIRNVFLKARSA----APCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGAT-NRV-DLL 351 (478)
Q Consensus 278 ~~~~~~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~tt-n~~-~~l 351 (478)
..+.++.+++.++.. ...|||+|||+++.. .-...||-.++ ++.+++|++| ..| -.+
T Consensus 85 gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK-------------~QQD~lLp~vE----~G~iilIGATTENPsF~l 147 (436)
T COG2256 85 GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK-------------AQQDALLPHVE----NGTIILIGATTENPSFEL 147 (436)
T ss_pred cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh-------------hhhhhhhhhhc----CCeEEEEeccCCCCCeee
Confidence 567788899888543 247999999999973 22345666655 4556677654 445 458
Q ss_pred CccccCCCCCCeEEEeCCCCCHHHHHHHHHH
Q psy450 352 DPAILRPGRLDKSLYVGLYEDRISQLGVLKA 382 (478)
Q Consensus 352 d~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~ 382 (478)
+++|++ |.. ++.+. |.+.++...+++.
T Consensus 148 n~ALlS--R~~-vf~lk-~L~~~di~~~l~r 174 (436)
T COG2256 148 NPALLS--RAR-VFELK-PLSSEDIKKLLKR 174 (436)
T ss_pred cHHHhh--hhh-eeeee-cCCHHHHHHHHHH
Confidence 999999 874 44444 4688888888876
No 91
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.69 E-value=5.3e-16 Score=156.28 Aligned_cols=238 Identities=21% Similarity=0.197 Sum_probs=152.2
Q ss_pred cccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC---------CcEEEEechhhhh----
Q psy450 206 WEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR---------MNFLAVKGPELLN---- 272 (478)
Q Consensus 206 ~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~---------~~~~~v~~~~l~~---- 272 (478)
-++++|.++..+.|...+..... +..+.+++++||||||||++++.+++.+. ..+++++|....+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 45899999999999988876543 33467799999999999999999998652 5688888754321
Q ss_pred ------hhh--cc--------hHHHHHHHHHHhH-hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCC-C
Q psy450 273 ------KYI--GQ--------SEENIRNVFLKAR-SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGV-H 334 (478)
Q Consensus 273 ------~~~--g~--------~~~~~~~~~~~a~-~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~ 334 (478)
... |. ....+..++.... ...+.||+|||+|.+.... +.+++.++...+.. .
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~----------~~~L~~l~~~~~~~~~ 161 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD----------DDLLYQLSRARSNGDL 161 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC----------cHHHHhHhccccccCC
Confidence 111 10 1222344444443 3456799999999997321 23556666552211 1
Q ss_pred CCCCeEEEEEcCCCC---CCCccccCCCCCC-eEEEeCCCCCHHHHHHHHHHHHhc-CC--CCCCCCHHHHHHhcC--CC
Q psy450 335 TSQDVFILGATNRVD---LLDPAILRPGRLD-KSLYVGLYEDRISQLGVLKAVVRK-FK--LSDDVSLDSLVHHFP--SQ 405 (478)
Q Consensus 335 ~~~~v~vI~ttn~~~---~ld~~l~~~~Rf~-~~i~~~~pp~~~~r~~il~~~~~~-~~--~~~~~~~~~la~~~~--~~ 405 (478)
...++.+|+++|.++ .+++.+.+ ||. ..+.++. ++.++..+|++..++. .. .-.+..+..++.... .|
T Consensus 162 ~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p-~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G 238 (365)
T TIGR02928 162 DNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPP-YDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHG 238 (365)
T ss_pred CCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCC-CCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcC
Confidence 235788999999885 47778877 775 5688875 7899999999988752 11 111111333333220 12
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhchhccCCCcccccccccccccccccccc
Q psy450 406 MSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGACSLATAPDKFSQSVAPDNYSLSVAPEL 475 (478)
Q Consensus 406 ~sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~~~~~~~~~~~ 475 (478)
. .+....+|+.|+..|..+. ...||.+|+.+| +..+..+...+.+.-++.|++
T Consensus 239 d-~R~al~~l~~a~~~a~~~~----------~~~it~~~v~~a------~~~~~~~~~~~~i~~l~~~~~ 291 (365)
T TIGR02928 239 D-ARKAIDLLRVAGEIAEREG----------AERVTEDHVEKA------QEKIEKDRLLELIRGLPTHSK 291 (365)
T ss_pred C-HHHHHHHHHHHHHHHHHcC----------CCCCCHHHHHHH------HHHHHHHHHHHHHHcCCHHHH
Confidence 1 2234456677776665442 346999999999 776666655555555566655
No 92
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.68 E-value=8.6e-16 Score=164.99 Aligned_cols=226 Identities=16% Similarity=0.241 Sum_probs=157.8
Q ss_pred CcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh----------CCcEEEEechhhh--h
Q psy450 205 SWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC----------RMNFLAVKGPELL--N 272 (478)
Q Consensus 205 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~----------~~~~~~v~~~~l~--~ 272 (478)
.++.++|.++...++.+.+... ...++||+||||||||+++++++... +..++.++...+. .
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r~------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~ 257 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGT 257 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhccc
Confidence 4677899998888887766542 25678999999999999999999864 4566666666665 4
Q ss_pred hhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC---
Q psy450 273 KYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD--- 349 (478)
Q Consensus 273 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~--- 349 (478)
.|.|+.+..++.++..+....++||||||+|.+.+.+...+.+ ..+.+.|...+ ..+.+.+|++|+.++
T Consensus 258 ~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~----~d~~nlLkp~L----~~g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 258 KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ----VDAANLIKPLL----SSGKIRVIGSTTYQEFSN 329 (758)
T ss_pred chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcH----HHHHHHHHHHH----hCCCeEEEecCChHHHHH
Confidence 5778889999999998888888999999999998765321111 12222222222 356799999999875
Q ss_pred --CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHH---------hcCCCCCHHHHHHHHHHH
Q psy450 350 --LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVH---------HFPSQMSGADIYSICSNA 418 (478)
Q Consensus 350 --~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~---------~~~~~~sg~di~~l~~~a 418 (478)
..|+++.| ||+ .|.++. |+.+++..|++.+..++....++.+.+-|- +.++.+-+.....++.+|
T Consensus 330 ~~~~D~AL~r--RFq-~I~v~e-Ps~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea 405 (758)
T PRK11034 330 IFEKDRALAR--RFQ-KIDITE-PSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEA 405 (758)
T ss_pred HhhccHHHHh--hCc-EEEeCC-CCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHH
Confidence 47999999 996 789986 799999999998877766655554433322 234445666778888888
Q ss_pred HHHHHHHHHhcCCCCCCCCccccHHHHHhchhccCC
Q psy450 419 WTRAIRRIITSAPQVKSAPVIVTMDDFLGACSLATA 454 (478)
Q Consensus 419 ~~~a~~r~~~~~~~~~~~~~~it~~d~~~A~~~~~~ 454 (478)
+... |.... ......|+.+|+.+..+..++
T Consensus 406 ~a~~--~~~~~----~~~~~~v~~~~i~~v~~~~tg 435 (758)
T PRK11034 406 GARA--RLMPV----SKRKKTVNVADIESVVARIAR 435 (758)
T ss_pred HHhh--ccCcc----cccccccChhhHHHHHHHHhC
Confidence 7432 11100 011235778888877555544
No 93
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.68 E-value=4.3e-16 Score=159.39 Aligned_cols=155 Identities=14% Similarity=0.088 Sum_probs=115.7
Q ss_pred HHHhhccCccchhhhhHHHHhhhhc----CCCeEEEecccccccch-----------hhHhhhccccccccccccchhhh
Q psy450 19 LLTNYFATPRYHHLNDIVKINLKKY----NLDIFKYDEVNYLCNVK-----------YVYFKLCSFDSVNVKSNETKDQQ 83 (478)
Q Consensus 19 ~~~~~~~~~~~~~~~~if~~~a~~~----~p~ilfiDe~d~i~~~r-----------~~~~~l~~~d~~~~~~~~~~~~~ 83 (478)
++++|.+++. .+++.+|+ .|++. +||||||||+|+++++| .++++|+.||++
T Consensus 262 Ll~kyvGete-~~ir~iF~-~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl----------- 328 (512)
T TIGR03689 262 LLNKYVGETE-RQIRLIFQ-RAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV----------- 328 (512)
T ss_pred hcccccchHH-HHHHHHHH-HHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc-----------
Confidence 4455666554 48999998 88764 79999999999999765 478999999965
Q ss_pred ccCCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCC---------ChhHHHHHHH-
Q psy450 84 CKQQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGF---------DASLVEYLSS- 144 (478)
Q Consensus 84 ~~~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~---------~~~~i~~la~- 144 (478)
...++|+||| ||||++| |||++|+|+.|+.++|.+||+.++... .++.. ..+. ..+++
T Consensus 329 -~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~-l~l~~~l~~~~g~~~a~~-~al~~~ 405 (512)
T TIGR03689 329 -ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDS-LPLDADLAEFDGDREATA-AALIQR 405 (512)
T ss_pred -ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhcc-CCchHHHHHhcCCCHHHH-HHHHHH
Confidence 4456788888 9999999 999999999999999999999998642 12210 0111 22222
Q ss_pred ----------------------------hcCCCCHHHHHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHhh
Q psy450 145 ----------------------------VTSGFERHDLTCLVRLSVKNKMLKQ-GINKRDLQKEDFQQIYDDLQ 189 (478)
Q Consensus 145 ----------------------------~t~G~s~~di~~l~~~a~~~a~~~~-~~~~~~it~~d~~~a~~~~~ 189 (478)
.++.+||++|+++|.+|...++.+. ......++.+|+..|+..-.
T Consensus 406 av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~ 479 (512)
T TIGR03689 406 AVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEF 479 (512)
T ss_pred HHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhh
Confidence 2567888888888888888887542 22346888899988887543
No 94
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.66 E-value=1.6e-15 Score=158.52 Aligned_cols=210 Identities=20% Similarity=0.269 Sum_probs=141.0
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh----------CCcEEEEechh
Q psy450 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC----------RMNFLAVKGPE 269 (478)
Q Consensus 200 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~----------~~~~~~v~~~~ 269 (478)
.+.+.+|++++|++..++.+...+.. ..+.++||+||||||||++|+++.+.+ +.+|+.++|..
T Consensus 58 ~~rp~~f~~iiGqs~~i~~l~~al~~------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 58 KTRPKSFDEIIGQEEGIKALKAALCG------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATT 131 (531)
T ss_pred hhCcCCHHHeeCcHHHHHHHHHHHhC------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccc
Confidence 34567899999999999988865321 226689999999999999999998643 35789998753
Q ss_pred h-------hhhhhcchHHH----------------HHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHH
Q psy450 270 L-------LNKYIGQSEEN----------------IRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQL 326 (478)
Q Consensus 270 l-------~~~~~g~~~~~----------------~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~l 326 (478)
. .....+..... ....+.. ....+|||||++.|.+ ...+.|
T Consensus 132 ~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~---a~gG~L~IdEI~~L~~-------------~~q~~L 195 (531)
T TIGR02902 132 ARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTR---AHGGVLFIDEIGELHP-------------VQMNKL 195 (531)
T ss_pred ccCCccccchhhcCCcccchhccccccccCCcccccCchhhc---cCCcEEEEechhhCCH-------------HHHHHH
Confidence 1 11111110000 0011222 2346999999999973 344555
Q ss_pred HHhhcCCC--------------------------CCCC-eEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHH
Q psy450 327 LAEMDGVH--------------------------TSQD-VFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGV 379 (478)
Q Consensus 327 l~~l~~~~--------------------------~~~~-v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~i 379 (478)
+..++.-. ...+ .++++||+.|+.+++++++ |+. .++++. ++.+++..|
T Consensus 196 L~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~p-L~~eei~~I 271 (531)
T TIGR02902 196 LKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRP-LLDEEIKEI 271 (531)
T ss_pred HHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCC-CCHHHHHHH
Confidence 55443210 0112 4455677889999999999 984 566764 678899999
Q ss_pred HHHHHhcCCCCCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 380 LKAVVRKFKLSDDV-SLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 380 l~~~~~~~~~~~~~-~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
++..+++.++.-+. .++.++.++ .+++++.++++.|+..|..+. ...||.+|+.++
T Consensus 272 l~~~a~k~~i~is~~al~~I~~y~---~n~Rel~nll~~Aa~~A~~~~----------~~~It~~dI~~v 328 (531)
T TIGR02902 272 AKNAAEKIGINLEKHALELIVKYA---SNGREAVNIVQLAAGIALGEG----------RKRILAEDIEWV 328 (531)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHhh---hhHHHHHHHHHHHHHHHhhCC----------CcEEcHHHHHHH
Confidence 99998876654322 245555443 378999999999987665432 357999999999
No 95
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.66 E-value=2.4e-15 Score=157.64 Aligned_cols=236 Identities=17% Similarity=0.202 Sum_probs=155.5
Q ss_pred ccccCcHHHHHHHHHHHHhhhhhCCCCCce-EEEeCCCCChHHHHHHHHHHHh----------CCcEEEEechhhhhh--
Q psy450 207 EDIGGLSKLKAEILSTFRGVNRTSGLKRSG-LLLYGPPGTGKTLIAKAVATEC----------RMNFLAVKGPELLNK-- 273 (478)
Q Consensus 207 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~-iLl~Gp~GtGKT~la~~la~~~----------~~~~~~v~~~~l~~~-- 273 (478)
+.|.|.++..++|..++.......+ +.+ ++++|+||||||++++.+.+++ ...+++++|..+...
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsg--pnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSG--SNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCC--CCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 6899999999999998887765332 444 5699999999999999998766 256789998443211
Q ss_pred --------h------hc-chHHHHHHHHHHhH--hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCC
Q psy450 274 --------Y------IG-QSEENIRNVFLKAR--SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTS 336 (478)
Q Consensus 274 --------~------~g-~~~~~~~~~~~~a~--~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 336 (478)
. .| .+...+..+|.... .....||+|||||.|..+. +.++..|+.+.. ...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~----------QDVLYnLFR~~~--~s~ 900 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT----------QKVLFTLFDWPT--KIN 900 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH----------HHHHHHHHHHhh--ccC
Confidence 1 01 12334555665542 2335799999999998531 456777776644 234
Q ss_pred CCeEEEEEcCC---CCCCCccccCCCCCCeE-EEeCCCCCHHHHHHHHHHHHhcCC-CCCCCCHHHHHHhcCCCCCHHHH
Q psy450 337 QDVFILGATNR---VDLLDPAILRPGRLDKS-LYVGLYEDRISQLGVLKAVVRKFK-LSDDVSLDSLVHHFPSQMSGADI 411 (478)
Q Consensus 337 ~~v~vI~ttn~---~~~ld~~l~~~~Rf~~~-i~~~~pp~~~~r~~il~~~~~~~~-~~~~~~~~~la~~~~~~~sg~di 411 (478)
.+++||+++|. ++.+++.+++ ||... +.|+ |++.+++.+||+..+.... +-.+.-+..+|+.. +..+ +|+
T Consensus 901 SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~-PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkV-Aq~S-GDA 975 (1164)
T PTZ00112 901 SKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFS-PYKGDEIEKIIKERLENCKEIIDHTAIQLCARKV-ANVS-GDI 975 (1164)
T ss_pred CeEEEEEecCchhcchhhhhhhhh--ccccccccCC-CCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhh-hhcC-CHH
Confidence 57999999987 4557788888 77653 6665 5899999999999887542 11222255555544 2333 477
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhchhccCCCcccccccccccccccccccccc
Q psy450 412 YSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGACSLATAPDKFSQSVAPDNYSLSVAPELLV 477 (478)
Q Consensus 412 ~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~~~~~~~~~~~~~ 477 (478)
+.++.... .|.... ....|+.+|+.+| +.++..+.-.+.+.-++.|++||
T Consensus 976 RKALDILR-rAgEik---------egskVT~eHVrkA------leeiE~srI~e~IktLPlHqKLV 1025 (1164)
T PTZ00112 976 RKALQICR-KAFENK---------RGQKIVPRDITEA------TNQLFDSPLTNAINYLPWPFKMF 1025 (1164)
T ss_pred HHHHHHHH-HHHhhc---------CCCccCHHHHHHH------HHHHHhhhHHHHHHcCCHHHHHH
Confidence 75543222 222211 1337999999999 77776665566666667777664
No 96
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.65 E-value=5.8e-15 Score=150.32 Aligned_cols=241 Identities=22% Similarity=0.244 Sum_probs=153.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh-----CCcEEEEechhhh------
Q psy450 203 NVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC-----RMNFLAVKGPELL------ 271 (478)
Q Consensus 203 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~-----~~~~~~v~~~~l~------ 271 (478)
...-+.+.|.++..+.|...+..... +..+.+++++||||||||++++.+++.+ +..++++++....
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~ 103 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIF 103 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHH
Confidence 33446789999999999888865543 3336679999999999999999999877 5678899885332
Q ss_pred ----hhhhc-------ch-HHHHHHHHHHhHh-CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCC
Q psy450 272 ----NKYIG-------QS-EENIRNVFLKARS-AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQD 338 (478)
Q Consensus 272 ----~~~~g-------~~-~~~~~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 338 (478)
....+ .+ ...+..+.+.... ..+.||+|||+|.+....+ ...++.++..++... ..+
T Consensus 104 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~---------~~~l~~l~~~~~~~~-~~~ 173 (394)
T PRK00411 104 SEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG---------NDVLYSLLRAHEEYP-GAR 173 (394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC---------chHHHHHHHhhhccC-CCe
Confidence 11111 11 2223333333332 3568999999999972211 245677776665432 337
Q ss_pred eEEEEEcCCCC---CCCccccCCCCCC-eEEEeCCCCCHHHHHHHHHHHHhcCC---CCCCCCHHHHHHhcCCCCCHHHH
Q psy450 339 VFILGATNRVD---LLDPAILRPGRLD-KSLYVGLYEDRISQLGVLKAVVRKFK---LSDDVSLDSLVHHFPSQMSGADI 411 (478)
Q Consensus 339 v~vI~ttn~~~---~ld~~l~~~~Rf~-~~i~~~~pp~~~~r~~il~~~~~~~~---~~~~~~~~~la~~~~~~~sg~di 411 (478)
+.+|+++|.++ .+++.+.+ ||. ..+.++. ++.++..+|++..++.-. .-.+..+..+++.+ .+.+| |+
T Consensus 174 v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~p-y~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~-~~~~G-d~ 248 (394)
T PRK00411 174 IGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPP-YTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLT-AREHG-DA 248 (394)
T ss_pred EEEEEEECCcchhhhcCHHHHh--cCCcceeecCC-CCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHH-HHhcC-cH
Confidence 88899988764 46777776 664 4677774 789999999988775321 11222245555544 33333 44
Q ss_pred H---HHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhchhccCCCccccccccccccccccccccc
Q psy450 412 Y---SICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGACSLATAPDKFSQSVAPDNYSLSVAPELL 476 (478)
Q Consensus 412 ~---~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~~~~~~~~~~~~ 476 (478)
+ .+|..|+..|..+. ...||.+|+.+| +.++.++.-.+.+.-++.|+++
T Consensus 249 r~a~~ll~~a~~~a~~~~----------~~~I~~~~v~~a------~~~~~~~~~~~~~~~L~~~~k~ 300 (394)
T PRK00411 249 RVAIDLLRRAGLIAEREG----------SRKVTEEDVRKA------YEKSEIVHLSEVLRTLPLHEKL 300 (394)
T ss_pred HHHHHHHHHHHHHHHHcC----------CCCcCHHHHHHH------HHHHHHHHHHHHHhcCCHHHHH
Confidence 4 56666666555442 457999999999 7776655544444444444443
No 97
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.65 E-value=6.1e-16 Score=148.97 Aligned_cols=139 Identities=7% Similarity=-0.031 Sum_probs=110.3
Q ss_pred HHHHhhccCccchhhhhHHHHhhhh-----cCCCeEEEecccccccch----------h-hHhhhccccccccccccchh
Q psy450 18 HLLTNYFATPRYHHLNDIVKINLKK-----YNLDIFKYDEVNYLCNVK----------Y-VYFKLCSFDSVNVKSNETKD 81 (478)
Q Consensus 18 ~~~~~~~~~~~~~~~~~if~~~a~~-----~~p~ilfiDe~d~i~~~r----------~-~~~~l~~~d~~~~~~~~~~~ 81 (478)
.|+++|.|++.. .||.+|+ .|++ .+||||||||||++++.| . .++||+.||+... +..
T Consensus 183 eL~sk~vGEsEk-~IR~~F~-~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~----v~l 256 (413)
T PLN00020 183 ELESENAGEPGK-LIRQRYR-EAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTN----VSL 256 (413)
T ss_pred HhhcCcCCcHHH-HHHHHHH-HHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCcc----ccc
Confidence 567788888877 9999999 8875 479999999999999976 2 3688899996421 011
Q ss_pred hhc----cCCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCC
Q psy450 82 QQC----KQQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSG 148 (478)
Q Consensus 82 ~~~----~~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G 148 (478)
.|. +....|+||+ |||||+| |||+.+ ..|+.++|.+||+.++++. .+. ..++ ..|+..++|
T Consensus 257 ~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~--~l~-~~dv-~~Lv~~f~g 330 (413)
T PLN00020 257 GGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDD--GVS-REDV-VKLVDTFPG 330 (413)
T ss_pred cccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccC--CCC-HHHH-HHHHHcCCC
Confidence 121 3456788888 9999999 999974 6899999999999999886 333 4666 999999988
Q ss_pred ----CCHHHHHHHHHHHHHHHHHh
Q psy450 149 ----FERHDLTCLVRLSVKNKMLK 168 (478)
Q Consensus 149 ----~s~~di~~l~~~a~~~a~~~ 168 (478)
|+|+--..++.++..+.+.+
T Consensus 331 q~~Df~GAlrar~yd~~v~~~i~~ 354 (413)
T PLN00020 331 QPLDFFGALRARVYDDEVRKWIAE 354 (413)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHH
Confidence 78888888888888888744
No 98
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=1.8e-15 Score=156.10 Aligned_cols=185 Identities=15% Similarity=0.210 Sum_probs=129.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc-------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------- 261 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------- 261 (478)
+...+|++++|++++++.|...+.. +..++.+||+||+|+|||++|+.+++.+++.
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~-----gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC 84 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQ-----QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRAC 84 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHh-----CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHH
Confidence 4567899999999999999887753 2236678999999999999999999998761
Q ss_pred ----------EEEEechhhhhhhhcchHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHH
Q psy450 262 ----------FLAVKGPELLNKYIGQSEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLL 327 (478)
Q Consensus 262 ----------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll 327 (478)
++.++... ......++++.+... .....|++|||+|.|. ....+.||
T Consensus 85 ~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-------------~~AaNALL 145 (700)
T PRK12323 85 TEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-------------NHAFNAML 145 (700)
T ss_pred HHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-------------HHHHHHHH
Confidence 22222210 122344566655542 3445799999999996 35678999
Q ss_pred HhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCC-HHHHHHhcCCCC
Q psy450 328 AEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVS-LDSLVHHFPSQM 406 (478)
Q Consensus 328 ~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~~~~ 406 (478)
+.|+. ...++++|.+||.++.+.+.+++ |+ ..+.|.. ++.++..+.++..+.+.++..+.+ +..+++.. + -
T Consensus 146 KTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~-ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A-~-G 217 (700)
T PRK12323 146 KTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQ-MPPGHIVSHLDAILGEEGIAHEVNALRLLAQAA-Q-G 217 (700)
T ss_pred Hhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCC-CChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-C-C
Confidence 99985 45578888899999999999999 98 5667765 577888888887776555443322 44555554 3 3
Q ss_pred CHHHHHHHHHH
Q psy450 407 SGADIYSICSN 417 (478)
Q Consensus 407 sg~di~~l~~~ 417 (478)
+.++..+++..
T Consensus 218 s~RdALsLLdQ 228 (700)
T PRK12323 218 SMRDALSLTDQ 228 (700)
T ss_pred CHHHHHHHHHH
Confidence 44455555443
No 99
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=5.6e-15 Score=149.06 Aligned_cols=172 Identities=17% Similarity=0.202 Sum_probs=120.8
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc-------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------- 261 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------- 261 (478)
+.+.+|++++|++.+...|...+... ..++.+||+||+|||||++|+.+|+.+++.
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~~~-----ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~ 86 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALKSG-----KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITK 86 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHc
Confidence 45678999999999999888776532 225669999999999999999999998753
Q ss_pred -----EEEEechhhhhhhhcchHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC
Q psy450 262 -----FLAVKGPELLNKYIGQSEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG 332 (478)
Q Consensus 262 -----~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~ 332 (478)
++.++... ......++++.+.+. .+...|++|||+|.+. ....+.|++.++.
T Consensus 87 g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls-------------~~A~NALLKtLEE 147 (484)
T PRK14956 87 GISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT-------------DQSFNALLKTLEE 147 (484)
T ss_pred cCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC-------------HHHHHHHHHHhhc
Confidence 22332211 112334455444332 3445799999999996 3567888998874
Q ss_pred CCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhc
Q psy450 333 VHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHF 402 (478)
Q Consensus 333 ~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~ 402 (478)
...++++|.+|+.++.+.+.+++ |+. .+.|.. ++.++....++..+...++.-+ ..+..++...
T Consensus 148 --Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~-ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S 212 (484)
T PRK14956 148 --PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKK-VPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKG 212 (484)
T ss_pred --CCCceEEEeecCChhhccHHHHh--hhh-eeeecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 45678888899999999999999 985 456654 4667777788877766554322 2255555543
No 100
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=6.7e-15 Score=153.84 Aligned_cols=187 Identities=16% Similarity=0.220 Sum_probs=130.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc-------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------- 261 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------- 261 (478)
+...+|++++|++++++.|...+.. +..++.+||+||+|||||++++.+++.+++.
T Consensus 10 YRPqtFdEVIGQe~Vv~~L~~aL~~-----gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~ 84 (830)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALDG-----GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDE 84 (830)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHhc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhc
Confidence 4567899999999999999887642 2236678999999999999999999988652
Q ss_pred -----EEEEechhhhhhhhcchHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC
Q psy450 262 -----FLAVKGPELLNKYIGQSEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG 332 (478)
Q Consensus 262 -----~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~ 332 (478)
+++++..+ ......++.+++.+. .....|++|||+|.|. ....+.|++.|+.
T Consensus 85 G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT-------------~~A~NALLKtLEE 145 (830)
T PRK07003 85 GRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT-------------NHAFNAMLKTLEE 145 (830)
T ss_pred CCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-------------HHHHHHHHHHHHh
Confidence 22222211 112334566665543 2345799999999996 3467889998885
Q ss_pred CCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHH
Q psy450 333 VHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADI 411 (478)
Q Consensus 333 ~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di 411 (478)
...++.+|.+||.++.|.+.|++ |+ ..+.|.. .+.++...+|+..+++.++..+ ..+..|++.. +| +.++.
T Consensus 146 --PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~-Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A-~G-smRdA 217 (830)
T PRK07003 146 --PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQ-MPAGHIVSHLERILGEERIAFEPQALRLLARAA-QG-SMRDA 217 (830)
T ss_pred --cCCCeEEEEEECChhhccchhhh--he-EEEecCC-cCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CC-CHHHH
Confidence 34578889999999999999999 98 5666764 6788888888888766554432 2255566654 33 33444
Q ss_pred HHHHHHHH
Q psy450 412 YSICSNAW 419 (478)
Q Consensus 412 ~~l~~~a~ 419 (478)
.+++..+.
T Consensus 218 LsLLdQAi 225 (830)
T PRK07003 218 LSLTDQAI 225 (830)
T ss_pred HHHHHHHH
Confidence 44444433
No 101
>PRK04195 replication factor C large subunit; Provisional
Probab=99.64 E-value=8.2e-15 Score=152.28 Aligned_cols=192 Identities=21% Similarity=0.239 Sum_probs=134.3
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcch
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQS 278 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~ 278 (478)
..+.+.++++++|++++++.|...+.... .|.+++++||+||||||||++|+++|++++.+++.+++++...
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~--~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~------ 77 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWL--KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT------ 77 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc------
Confidence 44567789999999999999999887655 3444778999999999999999999999999999999876432
Q ss_pred HHHHHHHHHHhHh------CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCC
Q psy450 279 EENIRNVFLKARS------AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLD 352 (478)
Q Consensus 279 ~~~~~~~~~~a~~------~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 352 (478)
...+..+...+.. ..+.+|+|||+|.+.+..+ ......++..++. .+..+|+++|.+..+.
T Consensus 78 ~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d---------~~~~~aL~~~l~~----~~~~iIli~n~~~~~~ 144 (482)
T PRK04195 78 ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED---------RGGARAILELIKK----AKQPIILTANDPYDPS 144 (482)
T ss_pred HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc---------hhHHHHHHHHHHc----CCCCEEEeccCccccc
Confidence 1223333332221 2467999999999975221 1234555555552 2345677889988887
Q ss_pred c-cccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy450 353 P-AILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADIYSICSNAWT 420 (478)
Q Consensus 353 ~-~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di~~l~~~a~~ 420 (478)
+ .+++ |+ ..+.|+. |+..+...+++..+...++.-+ ..+..|+..+ ++|++.+++....
T Consensus 145 ~k~Lrs--r~-~~I~f~~-~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s-----~GDlR~ain~Lq~ 205 (482)
T PRK04195 145 LRELRN--AC-LMIEFKR-LSTRSIVPVLKRICRKEGIECDDEALKEIAERS-----GGDLRSAINDLQA 205 (482)
T ss_pred hhhHhc--cc-eEEEecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-----CCCHHHHHHHHHH
Confidence 7 6665 54 5788875 6888888999888866554322 2366666654 3578777665543
No 102
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.64 E-value=3.5e-15 Score=153.92 Aligned_cols=200 Identities=17% Similarity=0.278 Sum_probs=124.1
Q ss_pred CCCCCCCcccccCcHH---HHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh-----CCcEEEEechhh
Q psy450 199 PSVPNVSWEDIGGLSK---LKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC-----RMNFLAVKGPEL 270 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~---~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~-----~~~~~~v~~~~l 270 (478)
.-.|..+|++++.-+. +...+.+.... ++...++++||||||||||+|++++++++ +..++++++.++
T Consensus 114 ~l~~~~tfd~fv~g~~n~~a~~~~~~~~~~----~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~ 189 (450)
T PRK00149 114 PLNPKYTFDNFVVGKSNRLAHAAALAVAEN----PGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF 189 (450)
T ss_pred CCCCCCcccccccCCCcHHHHHHHHHHHhC----cCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 3457778998653222 33333333322 23334569999999999999999999987 566889999887
Q ss_pred hhhhhcchHHH-HHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC
Q psy450 271 LNKYIGQSEEN-IRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349 (478)
Q Consensus 271 ~~~~~g~~~~~-~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 349 (478)
...+....... ...+....+ .+.+|+|||+|.+.++. .....++..++.....++.+||+++..|.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~-----------~~~~~l~~~~n~l~~~~~~iiits~~~p~ 256 (450)
T PRK00149 190 TNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGKE-----------RTQEEFFHTFNALHEAGKQIVLTSDRPPK 256 (450)
T ss_pred HHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCCH-----------HHHHHHHHHHHHHHHCCCcEEEECCCCHH
Confidence 66554332221 122222222 46799999999987532 11222333333222333445665555554
Q ss_pred C---CCccccCCCCCCe--EEEeCCCCCHHHHHHHHHHHHhcCC--CCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy450 350 L---LDPAILRPGRLDK--SLYVGLYEDRISQLGVLKAVVRKFK--LSDDVSLDSLVHHFPSQMSGADIYSICSNAWTR 421 (478)
Q Consensus 350 ~---ld~~l~~~~Rf~~--~i~~~~pp~~~~r~~il~~~~~~~~--~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~ 421 (478)
. +++.+++ ||.. .+.+. ||+.++|..|++..+...+ +++++ ++.|+.++ +-+.+++..++......
T Consensus 257 ~l~~l~~~l~S--Rl~~gl~v~i~-~pd~~~r~~il~~~~~~~~~~l~~e~-l~~ia~~~--~~~~R~l~~~l~~l~~~ 329 (450)
T PRK00149 257 ELPGLEERLRS--RFEWGLTVDIE-PPDLETRIAILKKKAEEEGIDLPDEV-LEFIAKNI--TSNVRELEGALNRLIAY 329 (450)
T ss_pred HHHHHHHHHHh--HhcCCeeEEec-CCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHcCc--CCCHHHHHHHHHHHHHH
Confidence 4 6788888 9975 56666 4899999999999887544 34433 77777765 33556666666655433
No 103
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=8.3e-15 Score=150.13 Aligned_cols=202 Identities=17% Similarity=0.251 Sum_probs=134.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCC--------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRM-------------------- 260 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~-------------------- 260 (478)
+.+.+|++++|++++++.|...+.. +..++++||+||||||||++|+++|+.+++
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~~-----~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~ 82 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKK-----NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDE 82 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhc
Confidence 4567899999999998888776543 223667999999999999999999998865
Q ss_pred ----cEEEEechhhhhhhhcchHHHHHHHHHHhHh----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC
Q psy450 261 ----NFLAVKGPELLNKYIGQSEENIRNVFLKARS----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG 332 (478)
Q Consensus 261 ----~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~ 332 (478)
.++.++.+. ......++.+.+.+.. ....|++|||+|.+. ....+.|+..++.
T Consensus 83 g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt-------------~~a~~~LLk~LE~ 143 (472)
T PRK14962 83 GTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT-------------KEAFNALLKTLEE 143 (472)
T ss_pred CCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-------------HHHHHHHHHHHHh
Confidence 244444321 1122345555544432 235699999999986 2346778888874
Q ss_pred CCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCC-CCCHHHHHHhcCCCCCHHHH
Q psy450 333 VHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSD-DVSLDSLVHHFPSQMSGADI 411 (478)
Q Consensus 333 ~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~sg~di 411 (478)
....+++|++|+.|..+++++++ |+. .+.+.. ++.++...+++..++..++.- +..+..++.++ + -..+.+
T Consensus 144 --p~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~-l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s-~-GdlR~a 215 (472)
T PRK14962 144 --PPSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRN-ISDELIIKRLQEVAEAEGIEIDREALSFIAKRA-S-GGLRDA 215 (472)
T ss_pred --CCCcEEEEEEeCChHhhhHHHhc--CcE-EEEECC-ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-C-CCHHHH
Confidence 34467777777788899999999 884 677775 688888888888776544322 22266677655 2 223333
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 412 YSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 412 ~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
.+.+..++. . . ...||.+|+.++
T Consensus 216 ln~Le~l~~-----~-~--------~~~It~e~V~~~ 238 (472)
T PRK14962 216 LTMLEQVWK-----F-S--------EGKITLETVHEA 238 (472)
T ss_pred HHHHHHHHH-----h-c--------CCCCCHHHHHHH
Confidence 333332221 1 0 113889998888
No 104
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.63 E-value=1e-14 Score=148.60 Aligned_cols=201 Identities=17% Similarity=0.275 Sum_probs=123.8
Q ss_pred CCCCCCcccc-cCcHH--HHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh-----CCcEEEEechhhh
Q psy450 200 SVPNVSWEDI-GGLSK--LKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC-----RMNFLAVKGPELL 271 (478)
Q Consensus 200 ~~~~~~~~~i-~g~~~--~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~-----~~~~~~v~~~~l~ 271 (478)
-.+..+|+++ +|.+. +...+.+... .++....+++||||+|+|||+|++++++++ +..++++++.++.
T Consensus 103 l~~~~tfd~fi~g~~n~~a~~~~~~~~~----~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~ 178 (405)
T TIGR00362 103 LNPKYTFDNFVVGKSNRLAHAAALAVAE----NPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT 178 (405)
T ss_pred CCCCCcccccccCCcHHHHHHHHHHHHh----CcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH
Confidence 3567889984 45333 2222222222 233335679999999999999999999987 5778999988876
Q ss_pred hhhhcchHH-HHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC
Q psy450 272 NKYIGQSEE-NIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDL 350 (478)
Q Consensus 272 ~~~~g~~~~-~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 350 (478)
..+...... ....+....+ .+.+|+|||+|.+.++. .....++..++.....+..+||+++..|..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~-----------~~~~~l~~~~n~~~~~~~~iiits~~~p~~ 245 (405)
T TIGR00362 179 NDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE-----------RTQEEFFHTFNALHENGKQIVLTSDRPPKE 245 (405)
T ss_pred HHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH-----------HHHHHHHHHHHHHHHCCCCEEEecCCCHHH
Confidence 554322111 1112222222 24699999999987532 111223333322222334456655555543
Q ss_pred ---CCccccCCCCCCe--EEEeCCCCCHHHHHHHHHHHHhcCCCCC-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy450 351 ---LDPAILRPGRLDK--SLYVGLYEDRISQLGVLKAVVRKFKLSD-DVSLDSLVHHFPSQMSGADIYSICSNAWTRA 422 (478)
Q Consensus 351 ---ld~~l~~~~Rf~~--~i~~~~pp~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~sg~di~~l~~~a~~~a 422 (478)
+++.+++ ||.. .+.++. |+.++|..|++..++..++.- +..++.++.++ .-+.+++..++......+
T Consensus 246 l~~l~~~l~S--Rl~~g~~v~i~~-pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~--~~~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 246 LPGLEERLRS--RFEWGLVVDIEP-PDLETRLAILQKKAEEEGLELPDEVLEFIAKNI--RSNVRELEGALNRLLAYA 318 (405)
T ss_pred Hhhhhhhhhh--hccCCeEEEeCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc--CCCHHHHHHHHHHHHHHH
Confidence 5678888 9975 566664 799999999999887655432 22377788776 346677777776655444
No 105
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.61 E-value=1.1e-14 Score=159.41 Aligned_cols=198 Identities=18% Similarity=0.270 Sum_probs=137.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh----------CCcEEEEechhhh-
Q psy450 203 NVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC----------RMNFLAVKGPELL- 271 (478)
Q Consensus 203 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~----------~~~~~~v~~~~l~- 271 (478)
+-.+++++|.++...++.+.+... ...+++|+||||||||++++.+|+.+ +.+++.++...+.
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r~------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a 256 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLRR------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA 256 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhcC------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc
Confidence 456889999999766665544221 14578999999999999999999976 2557777777665
Q ss_pred -hhhhcchHHHHHHHHHHhHh-CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC
Q psy450 272 -NKYIGQSEENIRNVFLKARS-AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349 (478)
Q Consensus 272 -~~~~g~~~~~~~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 349 (478)
..+.|+.+..++.+++.+.. ..++||||||+|.+.+.+++.+.. ..-+.|.-.+ ..+.+.+|++|+..+
T Consensus 257 g~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~-----d~~n~Lkp~l----~~G~l~~IgaTT~~e 327 (852)
T TIGR03345 257 GASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQG-----DAANLLKPAL----ARGELRTIAATTWAE 327 (852)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccc-----cHHHHhhHHh----hCCCeEEEEecCHHH
Confidence 35788899999999998864 467899999999998754322111 1222233333 356789999998753
Q ss_pred -----CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCC-----CCCHHHHHHhcCCCCC-----HHHHHHH
Q psy450 350 -----LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSD-----DVSLDSLVHHFPSQMS-----GADIYSI 414 (478)
Q Consensus 350 -----~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~-----~~~~~~la~~~~~~~s-----g~di~~l 414 (478)
.+|++|.| ||. .|.++. |+.++...||+.+.+.+.... +..+..++..+ .+|. +..--.+
T Consensus 328 ~~~~~~~d~AL~r--Rf~-~i~v~e-ps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls-~ryi~~r~LPDKAIdl 402 (852)
T TIGR03345 328 YKKYFEKDPALTR--RFQ-VVKVEE-PDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELS-HRYIPGRQLPDKAVSL 402 (852)
T ss_pred HhhhhhccHHHHH--hCe-EEEeCC-CCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHc-ccccccccCccHHHHH
Confidence 38999999 995 788986 799999999877765543222 22244555544 4443 3344566
Q ss_pred HHHHHH
Q psy450 415 CSNAWT 420 (478)
Q Consensus 415 ~~~a~~ 420 (478)
+.+|+.
T Consensus 403 ldea~a 408 (852)
T TIGR03345 403 LDTACA 408 (852)
T ss_pred HHHHHH
Confidence 666653
No 106
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.61 E-value=1.2e-14 Score=148.56 Aligned_cols=202 Identities=14% Similarity=0.246 Sum_probs=121.7
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh-----CCcEEEEechhhhhh
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC-----RMNFLAVKGPELLNK 273 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~-----~~~~~~v~~~~l~~~ 273 (478)
+-.|..+|++++.-+............. ..++. ..+++||||||+|||+|++++++++ +..++++++.++...
T Consensus 97 ~l~~~~tFdnFv~g~~n~~a~~~~~~~~-~~~~~-~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~ 174 (440)
T PRK14088 97 PLNPDYTFENFVVGPGNSFAYHAALEVA-KNPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND 174 (440)
T ss_pred CCCCCCcccccccCCchHHHHHHHHHHH-hCcCC-CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 4467889999873333332222222222 22232 4569999999999999999999986 457889998887665
Q ss_pred hhcchH-HHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC--
Q psy450 274 YIGQSE-ENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDL-- 350 (478)
Q Consensus 274 ~~g~~~-~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~-- 350 (478)
+..... ..+.. |.......+.+|+|||++.+.++. .....++..++.....++.+|+++.+.|..
T Consensus 175 ~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~-----------~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~ 242 (440)
T PRK14088 175 LVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT-----------GVQTELFHTFNELHDSGKQIVICSDREPQKLS 242 (440)
T ss_pred HHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH-----------HHHHHHHHHHHHHHHcCCeEEEECCCCHHHHH
Confidence 432211 11222 222222357899999999986432 111223223332223344556655566654
Q ss_pred -CCccccCCCCCCeEEEeCC-CCCHHHHHHHHHHHHhc--CCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy450 351 -LDPAILRPGRLDKSLYVGL-YEDRISQLGVLKAVVRK--FKLSDDVSLDSLVHHFPSQMSGADIYSICSNAW 419 (478)
Q Consensus 351 -ld~~l~~~~Rf~~~i~~~~-pp~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~ 419 (478)
+.+.+.+ ||...+.+.+ ||+.+.|..|++..++. +.+++++ +..|+.++ .-+.+++..++....
T Consensus 243 ~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev-~~~Ia~~~--~~~~R~L~g~l~~l~ 310 (440)
T PRK14088 243 EFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEV-LNFVAENV--DDNLRRLRGAIIKLL 310 (440)
T ss_pred HHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHhcc--ccCHHHHHHHHHHHH
Confidence 5567888 8875554443 58999999999888764 3444443 77777765 235566666665543
No 107
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=3.6e-14 Score=146.01 Aligned_cols=212 Identities=18% Similarity=0.197 Sum_probs=143.8
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEE------------ec
Q psy450 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAV------------KG 267 (478)
Q Consensus 200 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v------------~~ 267 (478)
.+.+.+|++++|++.+++.|...+.. +..+.++||+||||||||++|+++|+.+++..... +|
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~-----~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C 88 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILN-----DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNC 88 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHc-----CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHH
Confidence 45677899999999999988775532 33367899999999999999999999986531100 00
Q ss_pred hhhhhh----------hhcchHHHHHHHHHHhHh----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCC
Q psy450 268 PELLNK----------YIGQSEENIRNVFLKARS----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGV 333 (478)
Q Consensus 268 ~~l~~~----------~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 333 (478)
..+... ........++.+++.+.. ....|++|||+|.+. ...++.|++.++.
T Consensus 89 ~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls-------------~~a~naLLk~LEe- 154 (507)
T PRK06645 89 ISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS-------------KGAFNALLKTLEE- 154 (507)
T ss_pred HHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC-------------HHHHHHHHHHHhh-
Confidence 011000 012234567777766642 235699999999886 3457788888884
Q ss_pred CCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHHH
Q psy450 334 HTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADIY 412 (478)
Q Consensus 334 ~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di~ 412 (478)
....+++|.+|+.++.+++.+++ |+ ..+.+.. ++.++...+++..+++.++.-+ ..+..++..+ + -+.+++.
T Consensus 155 -pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~-ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s-~-GslR~al 227 (507)
T PRK06645 155 -PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRR-LSFEEIFKLLEYITKQENLKTDIEALRIIAYKS-E-GSARDAV 227 (507)
T ss_pred -cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-C-CCHHHHH
Confidence 34567777788888899999998 88 4677765 6889999999988877665433 2256677765 3 3666766
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 413 SICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 413 ~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
+.+..+...+-. ....||.+++.+.
T Consensus 228 ~~Ldkai~~~~~-----------~~~~It~~~V~~l 252 (507)
T PRK06645 228 SILDQAASMSAK-----------SDNIISPQVINQM 252 (507)
T ss_pred HHHHHHHHhhcc-----------CCCCcCHHHHHHH
Confidence 666665432210 1224777777766
No 108
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=3e-14 Score=147.57 Aligned_cols=187 Identities=19% Similarity=0.211 Sum_probs=130.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc-------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------- 261 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------- 261 (478)
+.+.+|++++|++.+++.|...+. .+..++.+||+||+|+|||++|+++|+.+++.
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~-----~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~ 83 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALE-----RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNE 83 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhc
Confidence 345789999999999999988765 23336778999999999999999999998652
Q ss_pred -----EEEEechhhhhhhhcchHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC
Q psy450 262 -----FLAVKGPELLNKYIGQSEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG 332 (478)
Q Consensus 262 -----~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~ 332 (478)
++.++.++ ......++.+...+. .+...|++|||+|.|. ....+.|++.++.
T Consensus 84 g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS-------------~~A~NALLKtLEE 144 (702)
T PRK14960 84 GRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS-------------THSFNALLKTLEE 144 (702)
T ss_pred CCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-------------HHHHHHHHHHHhc
Confidence 33333321 112344566655442 2345799999999996 3456788888885
Q ss_pred CCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCC-CHHHHHHhcCCCCCHHHH
Q psy450 333 VHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDV-SLDSLVHHFPSQMSGADI 411 (478)
Q Consensus 333 ~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~sg~di 411 (478)
. ...+.+|.+|+.+..+++.+++ |+ ..+.|.. ++.++...+++..+++.++..+. .+..++... +-+.+++
T Consensus 145 P--P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkp-Ls~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S--~GdLRdA 216 (702)
T PRK14960 145 P--PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRP-LAVDEITKHLGAILEKEQIAADQDAIWQIAESA--QGSLRDA 216 (702)
T ss_pred C--CCCcEEEEEECChHhhhHHHHH--hh-heeeccC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHH
Confidence 3 4566777788888889999988 88 4666764 67888888888888766554332 255666654 3344555
Q ss_pred HHHHHHHH
Q psy450 412 YSICSNAW 419 (478)
Q Consensus 412 ~~l~~~a~ 419 (478)
.+++..+.
T Consensus 217 LnLLDQaI 224 (702)
T PRK14960 217 LSLTDQAI 224 (702)
T ss_pred HHHHHHHH
Confidence 55544433
No 109
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.60 E-value=2.2e-14 Score=143.73 Aligned_cols=180 Identities=18% Similarity=0.244 Sum_probs=121.2
Q ss_pred CcccccCcHHHHHHHHHHHHhhhh---hCCC-CCceEEEeCCCCChHHHHHHHHHHHhCCc-------------------
Q psy450 205 SWEDIGGLSKLKAEILSTFRGVNR---TSGL-KRSGLLLYGPPGTGKTLIAKAVATECRMN------------------- 261 (478)
Q Consensus 205 ~~~~i~g~~~~k~~l~~~~~~~~~---~~~~-~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------- 261 (478)
.|++|+|++.+++.|...+..... ..+. .++++||+||||+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 589999999999999999886531 1122 27789999999999999999999987543
Q ss_pred ----EEEEechhhhhhhhcchHHHHHHHHHHhHh----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCC
Q psy450 262 ----FLAVKGPELLNKYIGQSEENIRNVFLKARS----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGV 333 (478)
Q Consensus 262 ----~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 333 (478)
+..+.... ..-....++.+++.+.. ....|++|||+|.+. ....+.|++.++..
T Consensus 83 ~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-------------~~aanaLLk~LEep 144 (394)
T PRK07940 83 THPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-------------ERAANALLKAVEEP 144 (394)
T ss_pred CCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-------------HHHHHHHHHHhhcC
Confidence 11221110 11123456777776643 334699999999996 34558899988853
Q ss_pred CCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHH
Q psy450 334 HTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYS 413 (478)
Q Consensus 334 ~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~ 413 (478)
..++++|.+|+.++.+.|.+++ |+ ..++++. |+.++...++.. ..+++. .....++..+ +|..+..+.-
T Consensus 145 --~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~-~~~~~i~~~L~~---~~~~~~-~~a~~la~~s-~G~~~~A~~l 213 (394)
T PRK07940 145 --PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRT-PSVEAVAEVLVR---RDGVDP-ETARRAARAS-QGHIGRARRL 213 (394)
T ss_pred --CCCCeEEEEECChHHChHHHHh--hC-eEEECCC-CCHHHHHHHHHH---hcCCCH-HHHHHHHHHc-CCCHHHHHHH
Confidence 3445555566668999999999 98 5888876 677776666652 223332 2244555554 6766654433
No 110
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.60 E-value=6.4e-14 Score=141.03 Aligned_cols=233 Identities=23% Similarity=0.336 Sum_probs=150.3
Q ss_pred cccCcHHHHHHHHHHHHhhhhhC----------CCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh-hhhc
Q psy450 208 DIGGLSKLKAEILSTFRGVNRTS----------GLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN-KYIG 276 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~~~~~----------~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~-~~~g 276 (478)
.++|++.+++.+...+.....+. .....++||+||||||||++|+++|+.++.+|+.++++.+.. .|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 38999999999977764431111 112578999999999999999999999999999999987753 4667
Q ss_pred chHHH-HHHHHHHh----HhCCCeEEEEcCCccccCCCCCCC---CCchhHHHHHHHHHHhhcCCC----C-------CC
Q psy450 277 QSEEN-IRNVFLKA----RSAAPCVVFFDELDSLAPRRGQED---QSSGVMDRVVSQLLAEMDGVH----T-------SQ 337 (478)
Q Consensus 277 ~~~~~-~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~---~~~~~~~~~~~~ll~~l~~~~----~-------~~ 337 (478)
..... +..++..+ ....++||||||+|.+..++.+.+ +.++ ..+++.|+..|++.. + ..
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~--~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~ 229 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSG--EGVQQALLKILEGTVASVPPQGGRKHPQQ 229 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCccc--HHHHHHHHHHHhcCeEEeCCCCCcCcCCC
Confidence 65443 34444322 234678999999999987632211 1111 347788888887531 1 12
Q ss_pred CeEEEEEcCCCC----------------------------------------------------CCCccccCCCCCCeEE
Q psy450 338 DVFILGATNRVD----------------------------------------------------LLDPAILRPGRLDKSL 365 (478)
Q Consensus 338 ~v~vI~ttn~~~----------------------------------------------------~ld~~l~~~~Rf~~~i 365 (478)
+.++|.|+|-.. -+.|+++ ||++..+
T Consensus 230 ~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv 307 (412)
T PRK05342 230 EFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVA 307 (412)
T ss_pred CeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeee
Confidence 345555555410 0234444 4999999
Q ss_pred EeCCCCCHHHHHHHHH----HHHh-------cCCCCC---CCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy450 366 YVGLYEDRISQLGVLK----AVVR-------KFKLSD---DVSLDSLVHH-FPSQMSGADIYSICSNAWTRAIRRIITSA 430 (478)
Q Consensus 366 ~~~~pp~~~~r~~il~----~~~~-------~~~~~~---~~~~~~la~~-~~~~~sg~di~~l~~~a~~~a~~r~~~~~ 430 (478)
.|.. .+.++..+|+. .+++ ..++.- +.-+..|++. +..++-.+.|+.+++......+.+.....
T Consensus 308 ~f~~-L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p~~~ 386 (412)
T PRK05342 308 TLEE-LDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELPSRE 386 (412)
T ss_pred ecCC-CCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhccccC
Confidence 9974 79999999886 2332 122221 1226667775 33456668899998888888887764321
Q ss_pred CCCCCCCccccHHHHHhc
Q psy450 431 PQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 431 ~~~~~~~~~it~~d~~~A 448 (478)
......||.+.+..-
T Consensus 387 ---~~~~v~I~~~~v~~~ 401 (412)
T PRK05342 387 ---DVEKVVITKEVVEGK 401 (412)
T ss_pred ---CCceEEECHHHhccc
Confidence 122456777777543
No 111
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.60 E-value=1.4e-14 Score=159.08 Aligned_cols=169 Identities=20% Similarity=0.333 Sum_probs=126.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh----------CCcEEEEechhhh-
Q psy450 203 NVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC----------RMNFLAVKGPELL- 271 (478)
Q Consensus 203 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~----------~~~~~~v~~~~l~- 271 (478)
+-.++.++|.++...++.+++..- ...+++|+||||||||++++++|..+ +.+++.++...+.
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~a 247 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA 247 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhh
Confidence 346789999998766666555332 14569999999999999999999987 6788898888776
Q ss_pred -hhhhcchHHHHHHHHHHhHh-CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC
Q psy450 272 -NKYIGQSEENIRNVFLKARS-AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349 (478)
Q Consensus 272 -~~~~g~~~~~~~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 349 (478)
.+|.|..+..++.+|..+.. ..++||||||+|.+.+..++.+. ....+.|... ...+.+.+|++|+..+
T Consensus 248 g~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~-----~d~~~~lkp~----l~~g~l~~IgaTt~~e 318 (857)
T PRK10865 248 GAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA-----MDAGNMLKPA----LARGELHCVGATTLDE 318 (857)
T ss_pred ccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccc-----hhHHHHhcch----hhcCCCeEEEcCCCHH
Confidence 45778899999999988644 56889999999999865432111 1122222222 2456889999999876
Q ss_pred C-----CCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCC
Q psy450 350 L-----LDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLS 390 (478)
Q Consensus 350 ~-----ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~ 390 (478)
. +|+++.| ||+ .|.++. |+.+++..|++.+...+...
T Consensus 319 ~r~~~~~d~al~r--Rf~-~i~v~e-P~~~~~~~iL~~l~~~~e~~ 360 (857)
T PRK10865 319 YRQYIEKDAALER--RFQ-KVFVAE-PSVEDTIAILRGLKERYELH 360 (857)
T ss_pred HHHHhhhcHHHHh--hCC-EEEeCC-CCHHHHHHHHHHHhhhhccC
Confidence 3 7999999 997 577876 68999999998887655443
No 112
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=3.5e-14 Score=149.04 Aligned_cols=185 Identities=18% Similarity=0.219 Sum_probs=128.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc-------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------- 261 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------- 261 (478)
+.+.+|++++|++.+++.|...+.. +..++.+||+||+|+|||++|+.+|+.+++.
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~~-----~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~ 84 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALDL-----GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQ 84 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHc
Confidence 3456899999999999988877653 2236668999999999999999999998763
Q ss_pred -----EEEEechhhhhhhhcchHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC
Q psy450 262 -----FLAVKGPELLNKYIGQSEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG 332 (478)
Q Consensus 262 -----~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~ 332 (478)
++.++... ......++++.+.+. .+...|++|||+|.|. ....+.|++.++.
T Consensus 85 g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls-------------~~a~NALLKtLEE 145 (647)
T PRK07994 85 GRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS-------------RHSFNALLKTLEE 145 (647)
T ss_pred CCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC-------------HHHHHHHHHHHHc
Confidence 22232211 112334555554442 2445799999999997 4568899999985
Q ss_pred CCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHH
Q psy450 333 VHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADI 411 (478)
Q Consensus 333 ~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di 411 (478)
....+.+|.+|+.++.+.+.+++ |+ ..+.|.. ++.++....++..++..++..+ ..+..++... +| +.++.
T Consensus 146 --Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~-Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s-~G-s~R~A 217 (647)
T PRK07994 146 --PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKA-LDVEQIRQQLEHILQAEQIPFEPRALQLLARAA-DG-SMRDA 217 (647)
T ss_pred --CCCCeEEEEecCCccccchHHHh--hh-eEeeCCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CC-CHHHH
Confidence 45567788888889999999999 97 6777775 6788888888877765554433 2244555554 33 34444
Q ss_pred HHHHHH
Q psy450 412 YSICSN 417 (478)
Q Consensus 412 ~~l~~~ 417 (478)
.+++..
T Consensus 218 l~lldq 223 (647)
T PRK07994 218 LSLTDQ 223 (647)
T ss_pred HHHHHH
Confidence 455443
No 113
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.59 E-value=5.1e-14 Score=143.64 Aligned_cols=204 Identities=11% Similarity=0.179 Sum_probs=121.2
Q ss_pred CCCCCCccccc-CcHHH--HHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh
Q psy450 200 SVPNVSWEDIG-GLSKL--KAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK 273 (478)
Q Consensus 200 ~~~~~~~~~i~-g~~~~--k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~ 273 (478)
-.|..+|++++ |.... ...+.+....+....+...++++||||+|+|||+|++++++++ +.++++++..++...
T Consensus 104 l~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~ 183 (445)
T PRK12422 104 LDPLMTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEH 183 (445)
T ss_pred CCccccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHH
Confidence 35778899876 43222 2333333322221222334679999999999999999999876 688899998777654
Q ss_pred hhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC---C
Q psy450 274 YIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD---L 350 (478)
Q Consensus 274 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~---~ 350 (478)
+.......-...|.... ..+.+|+|||++.+.++.. .++.+..+++.+ ...++.+|+++++.|. .
T Consensus 184 ~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~--------~qeelf~l~N~l---~~~~k~IIlts~~~p~~l~~ 251 (445)
T PRK12422 184 LVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA--------TQEEFFHTFNSL---HTEGKLIVISSTCAPQDLKA 251 (445)
T ss_pred HHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh--------hHHHHHHHHHHH---HHCCCcEEEecCCCHHHHhh
Confidence 33221111112233322 3457999999999875321 112222333322 1223445554444453 4
Q ss_pred CCccccCCCCCCeEEEeCC-CCCHHHHHHHHHHHHhcCCCCCCC-CHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy450 351 LDPAILRPGRLDKSLYVGL-YEDRISQLGVLKAVVRKFKLSDDV-SLDSLVHHFPSQMSGADIYSICSNAW 419 (478)
Q Consensus 351 ld~~l~~~~Rf~~~i~~~~-pp~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~sg~di~~l~~~a~ 419 (478)
+++.+++ ||...+.+++ ||+.++|..|++..++..++.-+. -++.++.+.. -+.+++..++...+
T Consensus 252 l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~--~dir~L~g~l~~l~ 318 (445)
T PRK12422 252 MEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALS--SNVKSLLHALTLLA 318 (445)
T ss_pred hHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC--CCHHHHHHHHHHHH
Confidence 6788998 9975555555 579999999998888765543222 2566777662 34456666555554
No 114
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=6.3e-14 Score=140.37 Aligned_cols=187 Identities=21% Similarity=0.254 Sum_probs=127.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc-------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------- 261 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------- 261 (478)
+.+.+|++++|++.+++.+...+.. +..++.+||+||||+|||++|+++|+.+.+.
T Consensus 10 yrP~~~~~iiGq~~~~~~l~~~~~~-----~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~ 84 (363)
T PRK14961 10 WRPQYFRDIIGQKHIVTAISNGLSL-----GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEK 84 (363)
T ss_pred hCCCchhhccChHHHHHHHHHHHHc-----CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 3457899999999999998876642 2236678999999999999999999988642
Q ss_pred -----EEEEechhhhhhhhcchHHHHHHHHHHhHh----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC
Q psy450 262 -----FLAVKGPELLNKYIGQSEENIRNVFLKARS----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG 332 (478)
Q Consensus 262 -----~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~ 332 (478)
++.++.+. ......++.+.+.+.. ....|++|||+|.+. ....+.|++.++.
T Consensus 85 ~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~-------------~~a~naLLk~lEe 145 (363)
T PRK14961 85 GLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS-------------RHSFNALLKTLEE 145 (363)
T ss_pred CCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC-------------HHHHHHHHHHHhc
Confidence 22222110 1223345555555432 234699999999986 3456778888875
Q ss_pred CCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHH
Q psy450 333 VHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADI 411 (478)
Q Consensus 333 ~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di 411 (478)
....+.+|.+|+.++.+.+.+++ |+ ..+.++. ++.++..++++..++..+..-+ ..+..++..+ +| +.+++
T Consensus 146 --~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~-l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s-~G-~~R~a 217 (363)
T PRK14961 146 --PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKI-ISEEKIFNFLKYILIKESIDTDEYALKLIAYHA-HG-SMRDA 217 (363)
T ss_pred --CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CC-CHHHH
Confidence 34466777778888889999998 88 5677764 7899999999888876654322 2355566654 33 45555
Q ss_pred HHHHHHHH
Q psy450 412 YSICSNAW 419 (478)
Q Consensus 412 ~~l~~~a~ 419 (478)
.+.+..++
T Consensus 218 l~~l~~~~ 225 (363)
T PRK14961 218 LNLLEHAI 225 (363)
T ss_pred HHHHHHHH
Confidence 55555443
No 115
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.59 E-value=4.1e-14 Score=146.53 Aligned_cols=197 Identities=14% Similarity=0.231 Sum_probs=122.2
Q ss_pred CCCCCcccccCcHHHH---HHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh-----CCcEEEEechhhhh
Q psy450 201 VPNVSWEDIGGLSKLK---AEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC-----RMNFLAVKGPELLN 272 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k---~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~-----~~~~~~v~~~~l~~ 272 (478)
.+..+|++++.-.... ..+..+.. ..+...+.++|||++|+|||+|++++++++ +..++++++.++..
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae----~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~ 357 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAE----APAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTN 357 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHh----CccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH
Confidence 3567888876433322 22233222 222223459999999999999999999986 56889999988877
Q ss_pred hhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC----
Q psy450 273 KYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRV---- 348 (478)
Q Consensus 273 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~---- 348 (478)
.+...........|... -..+++|+|||++.+.++.. .++.+..+++.+ ...++.+|| |+|.+
T Consensus 358 el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke~--------tqeeLF~l~N~l---~e~gk~III-TSd~~P~eL 424 (617)
T PRK14086 358 EFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKES--------TQEEFFHTFNTL---HNANKQIVL-SSDRPPKQL 424 (617)
T ss_pred HHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCHH--------HHHHHHHHHHHH---HhcCCCEEE-ecCCChHhh
Confidence 66543322222233322 22357999999999975421 112222333333 233344444 55553
Q ss_pred CCCCccccCCCCCCeEEEeCC-CCCHHHHHHHHHHHHhcCCCC--CCCCHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy450 349 DLLDPAILRPGRLDKSLYVGL-YEDRISQLGVLKAVVRKFKLS--DDVSLDSLVHHFPSQMSGADIYSICSNAW 419 (478)
Q Consensus 349 ~~ld~~l~~~~Rf~~~i~~~~-pp~~~~r~~il~~~~~~~~~~--~~~~~~~la~~~~~~~sg~di~~l~~~a~ 419 (478)
..+++.|++ ||...+.+.+ +|+.+.|..||+..++...+. .++ +..|+.++. -+.++|..++....
T Consensus 425 ~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eV-i~yLa~r~~--rnvR~LegaL~rL~ 493 (617)
T PRK14086 425 VTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEV-LEFIASRIS--RNIRELEGALIRVT 493 (617)
T ss_pred hhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHhcc--CCHHHHHHHHHHHH
Confidence 347888998 9987775555 589999999998887655543 333 777777762 34566666665543
No 116
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.59 E-value=4.2e-13 Score=142.47 Aligned_cols=221 Identities=20% Similarity=0.340 Sum_probs=133.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh----------CCcEEEEechhh
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC----------RMNFLAVKGPEL 270 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~----------~~~~~~v~~~~l 270 (478)
..+.+|++++|++...+.+...+..+ .+.+++|+||||||||++|+++++.. +.+|+.+++..+
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 45678999999999988876554321 15679999999999999999998655 357899988654
Q ss_pred h-------hhhhcchHHH----HHHHHHH----------hHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHh
Q psy450 271 L-------NKYIGQSEEN----IRNVFLK----------ARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAE 329 (478)
Q Consensus 271 ~-------~~~~g~~~~~----~~~~~~~----------a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~ 329 (478)
. ....+..... .+..+.. .......+|||||++.|.. .....++..
T Consensus 222 ~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~-------------~~Q~~Ll~~ 288 (615)
T TIGR02903 222 RWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP-------------LLQNKLLKV 288 (615)
T ss_pred cCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH-------------HHHHHHHHH
Confidence 1 1111211110 0111110 0112345999999998863 233444444
Q ss_pred hcCCC--------------------------CCCCeEEEE-EcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHH
Q psy450 330 MDGVH--------------------------TSQDVFILG-ATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKA 382 (478)
Q Consensus 330 l~~~~--------------------------~~~~v~vI~-ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~ 382 (478)
++.-. ...++++|+ ||+.++.+++++++ ||. .+.++. .+.++...|++.
T Consensus 289 Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~p-ls~edi~~Il~~ 364 (615)
T TIGR02903 289 LEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEP-LTPEDIALIVLN 364 (615)
T ss_pred HhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCC-CCHHHHHHHHHH
Confidence 43210 112355554 55678889999998 986 456664 688999999999
Q ss_pred HHhcCCCCCCCC-HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhch
Q psy450 383 VVRKFKLSDDVS-LDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGAC 449 (478)
Q Consensus 383 ~~~~~~~~~~~~-~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A~ 449 (478)
.+.+.++.-+.+ +..++..+ ..|+...+.+..+...+..+..... .......||.+|+.+++
T Consensus 365 ~a~~~~v~ls~eal~~L~~ys---~~gRraln~L~~~~~~~~~~~~~~~--~~~~~~~I~~edv~~~l 427 (615)
T TIGR02903 365 AAEKINVHLAAGVEELIARYT---IEGRKAVNILADVYGYALYRAAEAG--KENDKVTITQDDVYEVI 427 (615)
T ss_pred HHHHcCCCCCHHHHHHHHHCC---CcHHHHHHHHHHHHHHHHHHHHHhc--cCCCCeeECHHHHHHHh
Confidence 887665432222 33343332 2455555555555544443332000 01124579999999993
No 117
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=4.1e-14 Score=150.72 Aligned_cols=193 Identities=18% Similarity=0.163 Sum_probs=126.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEE-E-Ee---c---hhhhh
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFL-A-VK---G---PELLN 272 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~-~-v~---~---~~l~~ 272 (478)
+.+.+|++|+|++.+++.|+..+.. +.-++.+||+||||||||++|+++|+.+++.-. . .. | ..+..
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~~-----~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~ 84 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALTQ-----QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQ 84 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHh-----CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhc
Confidence 3457899999999999998877643 222666899999999999999999999876411 0 00 0 00000
Q ss_pred h-------hhc---chHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCC
Q psy450 273 K-------YIG---QSEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQD 338 (478)
Q Consensus 273 ~-------~~g---~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 338 (478)
. +.+ .....++.+...+. .+...|++|||+|.|. ....+.|++.|+. ...+
T Consensus 85 g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-------------~eAqNALLKtLEE--PP~~ 149 (944)
T PRK14949 85 GRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-------------RSSFNALLKTLEE--PPEH 149 (944)
T ss_pred CCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-------------HHHHHHHHHHHhc--cCCC
Confidence 0 000 12233555554442 2345699999999996 4678899999985 3456
Q ss_pred eEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCC-CHHHHHHhcCCCCCHHHHHHHHHH
Q psy450 339 VFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDV-SLDSLVHHFPSQMSGADIYSICSN 417 (478)
Q Consensus 339 v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~sg~di~~l~~~ 417 (478)
+.+|++|+.+..+.+.+++ |+ ..+.|.. .+.++....++..+...++..+. .+..++... +| +.+++.++|..
T Consensus 150 vrFILaTTe~~kLl~TIlS--RC-q~f~fkp-Ls~eEI~~~L~~il~~EgI~~edeAL~lIA~~S-~G-d~R~ALnLLdQ 223 (944)
T PRK14949 150 VKFLLATTDPQKLPVTVLS--RC-LQFNLKS-LTQDEIGTQLNHILTQEQLPFEAEALTLLAKAA-NG-SMRDALSLTDQ 223 (944)
T ss_pred eEEEEECCCchhchHHHHH--hh-eEEeCCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CC-CHHHHHHHHHH
Confidence 7777788888999999998 88 5566664 67888888887777654443322 245555543 33 34455555544
Q ss_pred HH
Q psy450 418 AW 419 (478)
Q Consensus 418 a~ 419 (478)
+.
T Consensus 224 al 225 (944)
T PRK14949 224 AI 225 (944)
T ss_pred HH
Confidence 33
No 118
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.59 E-value=4.6e-14 Score=143.93 Aligned_cols=196 Identities=21% Similarity=0.323 Sum_probs=128.5
Q ss_pred CCCCCcccccCcHHHHHH---HHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcc
Q psy450 201 VPNVSWEDIGGLSKLKAE---ILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQ 277 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~---l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~ 277 (478)
+.+.++++++|+++.... +...+... ...+++|+||||||||++|+++++.++.+++.+++...
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~------- 72 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS------- 72 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-------
Confidence 344679999999998665 66655321 25579999999999999999999999999999887532
Q ss_pred hHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcC-C-CCCC
Q psy450 278 SEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATN-R-VDLL 351 (478)
Q Consensus 278 ~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn-~-~~~l 351 (478)
....++.+++.+. .....||||||+|.+.. ...+.|+..++. ..+++|++|+ . ...+
T Consensus 73 ~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~-------------~~q~~LL~~le~----~~iilI~att~n~~~~l 135 (413)
T PRK13342 73 GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK-------------AQQDALLPHVED----GTITLIGATTENPSFEV 135 (413)
T ss_pred cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH-------------HHHHHHHHHhhc----CcEEEEEeCCCChhhhc
Confidence 2234455555542 23567999999999862 334556666653 4566666553 3 3468
Q ss_pred CccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcC-----CCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q psy450 352 DPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKF-----KLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRI 426 (478)
Q Consensus 352 d~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~-----~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~ 426 (478)
++++++ |+ ..+.++. ++.++...+++..+... .++.+ .+..++..+ .| ..+.+.+++..++..
T Consensus 136 ~~aL~S--R~-~~~~~~~-ls~e~i~~lL~~~l~~~~~~~i~i~~~-al~~l~~~s-~G-d~R~aln~Le~~~~~----- 203 (413)
T PRK13342 136 NPALLS--RA-QVFELKP-LSEEDIEQLLKRALEDKERGLVELDDE-ALDALARLA-NG-DARRALNLLELAALG----- 203 (413)
T ss_pred cHHHhc--cc-eeeEeCC-CCHHHHHHHHHHHHHHhhcCCCCCCHH-HHHHHHHhC-CC-CHHHHHHHHHHHHHc-----
Confidence 899999 98 5677775 68888888888776542 22211 244555544 22 333344444443321
Q ss_pred HhcCCCCCCCCccccHHHHHhc
Q psy450 427 ITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 427 ~~~~~~~~~~~~~it~~d~~~A 448 (478)
...||.+++.++
T Consensus 204 ----------~~~It~~~v~~~ 215 (413)
T PRK13342 204 ----------VDSITLELLEEA 215 (413)
T ss_pred ----------cCCCCHHHHHHH
Confidence 124777777777
No 119
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=2.8e-14 Score=147.81 Aligned_cols=187 Identities=16% Similarity=0.186 Sum_probs=130.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc-------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------- 261 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------- 261 (478)
+.+.+|++++|++.+++.|...+.. +..++.+||+||+|||||++|+++|+.+++.
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~-----~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 84 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQ-----QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDE 84 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHh-----CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhc
Confidence 4567899999999999999887753 2236678999999999999999999998653
Q ss_pred -----EEEEechhhhhhhhcchHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC
Q psy450 262 -----FLAVKGPELLNKYIGQSEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG 332 (478)
Q Consensus 262 -----~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~ 332 (478)
+++++.+. ......++.+.+.+. .+...|++|||+|.+. ....+.|++.++.
T Consensus 85 g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls-------------~~a~naLLk~LEe 145 (509)
T PRK14958 85 GRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS-------------GHSFNALLKTLEE 145 (509)
T ss_pred CCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC-------------HHHHHHHHHHHhc
Confidence 34444321 123334566655443 2345699999999997 3457889999985
Q ss_pred CCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHH
Q psy450 333 VHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADI 411 (478)
Q Consensus 333 ~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di 411 (478)
. ...+.+|.+|+.+..+.+.+++ |+ ..+.+.. .+.++....++..+++.++..+ ..+..++... +-+.+++
T Consensus 146 p--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~-l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~a 217 (509)
T PRK14958 146 P--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQ-LPPLQIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDA 217 (509)
T ss_pred c--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHH
Confidence 3 4567777788888999989998 87 4556664 5677777778777776655433 2255566654 3345566
Q ss_pred HHHHHHHH
Q psy450 412 YSICSNAW 419 (478)
Q Consensus 412 ~~l~~~a~ 419 (478)
.+++..+.
T Consensus 218 l~lLdq~i 225 (509)
T PRK14958 218 LSLLDQSI 225 (509)
T ss_pred HHHHHHHH
Confidence 66655443
No 120
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.58 E-value=7.2e-14 Score=139.21 Aligned_cols=208 Identities=22% Similarity=0.258 Sum_probs=132.3
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC-----CcEEEEechhhhhh
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR-----MNFLAVKGPELLNK 273 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~-----~~~~~v~~~~l~~~ 273 (478)
..+.+.+|++++|++.+++.|...+... ...+++|+||||||||++|+++++++. .+++++++.++...
T Consensus 7 ~ky~P~~~~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~ 80 (337)
T PRK12402 7 EKYRPALLEDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQ 80 (337)
T ss_pred HhhCCCcHHHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhc
Confidence 3455677999999999999988876532 133699999999999999999999884 34678887765322
Q ss_pred h---h----------cc-------hHHHHHHHHHHhHh-----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHH
Q psy450 274 Y---I----------GQ-------SEENIRNVFLKARS-----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLA 328 (478)
Q Consensus 274 ~---~----------g~-------~~~~~~~~~~~a~~-----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~ 328 (478)
. . +. ....++.+...... ..+.+|+|||+|.+.. ...+.|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-------------~~~~~L~~ 147 (337)
T PRK12402 81 GKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-------------DAQQALRR 147 (337)
T ss_pred chhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-------------HHHHHHHH
Confidence 1 0 00 11223333322222 2346999999998852 23344555
Q ss_pred hhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCC-CCCHHHHHHhcCCCCC
Q psy450 329 EMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSD-DVSLDSLVHHFPSQMS 407 (478)
Q Consensus 329 ~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~s 407 (478)
.++... ....+|.+++.+..+.+.+++ |+ ..+.+.. ++.++...+++..+++.++.- +..+..++..+
T Consensus 148 ~le~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~-~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~----- 216 (337)
T PRK12402 148 IMEQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRA-PTDDELVDVLESIAEAEGVDYDDDGLELIAYYA----- 216 (337)
T ss_pred HHHhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-----
Confidence 555432 234455566666777778887 76 4567764 688899999988877665442 22355666654
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 408 GADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 408 g~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
++|++.++......+. ....||.+|+.++
T Consensus 217 ~gdlr~l~~~l~~~~~------------~~~~It~~~v~~~ 245 (337)
T PRK12402 217 GGDLRKAILTLQTAAL------------AAGEITMEAAYEA 245 (337)
T ss_pred CCCHHHHHHHHHHHHH------------cCCCCCHHHHHHH
Confidence 3466666554443221 1225888888877
No 121
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=8.1e-14 Score=138.29 Aligned_cols=237 Identities=22% Similarity=0.261 Sum_probs=165.8
Q ss_pred ccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc-----EEEEechhhhhhh-------
Q psy450 207 EDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN-----FLAVKGPELLNKY------- 274 (478)
Q Consensus 207 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~-----~~~v~~~~l~~~~------- 274 (478)
+.+.+.+...+++...+..... |..|.+++++||||||||.+++.+++++... ++++||..+.+.+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 4488999999999988766653 3347779999999999999999999988443 8999985543221
Q ss_pred --------hcchHHH-HHHHHHHhHh-CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEE
Q psy450 275 --------IGQSEEN-IRNVFLKARS-AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGA 344 (478)
Q Consensus 275 --------~g~~~~~-~~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~t 344 (478)
.|.+... ...+++.... ....||++||+|.|..+.+ .+++.|+...+.. ..++.+|+.
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~----------~~LY~L~r~~~~~--~~~v~vi~i 162 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG----------EVLYSLLRAPGEN--KVKVSIIAV 162 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc----------hHHHHHHhhcccc--ceeEEEEEE
Confidence 1222222 2233333322 4457999999999986531 5788888776644 567899999
Q ss_pred cCCCC---CCCccccCCCCCC-eEEEeCCCCCHHHHHHHHHHHHhcCCCCC--CCCHHHHHHhcCCCCCHHHH---HHHH
Q psy450 345 TNRVD---LLDPAILRPGRLD-KSLYVGLYEDRISQLGVLKAVVRKFKLSD--DVSLDSLVHHFPSQMSGADI---YSIC 415 (478)
Q Consensus 345 tn~~~---~ld~~l~~~~Rf~-~~i~~~~pp~~~~r~~il~~~~~~~~~~~--~~~~~~la~~~~~~~sg~di---~~l~ 415 (478)
+|..+ .+++.+.+ ++. ..|.|++ .+.+|...|++...+..-... +.+.-+++.... +..++|. -.+|
T Consensus 163 ~n~~~~~~~ld~rv~s--~l~~~~I~F~p-Y~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~-a~~~GDAR~aidil 238 (366)
T COG1474 163 SNDDKFLDYLDPRVKS--SLGPSEIVFPP-YTAEELYDILRERVEEGFSAGVIDDDVLKLIAALV-AAESGDARKAIDIL 238 (366)
T ss_pred eccHHHHHHhhhhhhh--ccCcceeeeCC-CCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHH-HHcCccHHHHHHHH
Confidence 99874 58888887 555 4578875 799999999988876421111 112223333221 2222244 4778
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccccHHHHHhchhccCCCcccccccccccccccccccccc
Q psy450 416 SNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGACSLATAPDKFSQSVAPDNYSLSVAPELLV 477 (478)
Q Consensus 416 ~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~~~~~~~~~~~~~ 477 (478)
+.|+..|.++. ...++.+|+.+| ...+.+.+..+.+..++.|++++
T Consensus 239 r~A~eiAe~~~----------~~~v~~~~v~~a------~~~~~~~~~~~~~~~L~~~~ki~ 284 (366)
T COG1474 239 RRAGEIAEREG----------SRKVSEDHVREA------QEEIERDVLEEVLKTLPLHQKIV 284 (366)
T ss_pred HHHHHHHHhhC----------CCCcCHHHHHHH------HHHhhHHHHHHHHHcCCHhHHHH
Confidence 88888888775 568999999999 88888888888888888888764
No 122
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.57 E-value=5.6e-14 Score=155.01 Aligned_cols=172 Identities=20% Similarity=0.333 Sum_probs=127.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh----------CCcEEEEechhhh
Q psy450 202 PNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC----------RMNFLAVKGPELL 271 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~----------~~~~~~v~~~~l~ 271 (478)
.+-.++.++|.++...++.+.+... ...+++|+||||||||+++++++..+ +.+++.++...+.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~ 241 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALI 241 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHh
Confidence 3446888999999877666655332 14568999999999999999999886 6778888887775
Q ss_pred --hhhhcchHHHHHHHHHHhHh-CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q psy450 272 --NKYIGQSEENIRNVFLKARS-AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRV 348 (478)
Q Consensus 272 --~~~~g~~~~~~~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~ 348 (478)
..|.|..+..+..++..+.. ..++||||||+|.+.+.+...+ + ....+.|... ...+.+.+|++|+..
T Consensus 242 a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~--~---~d~~~~Lk~~----l~~g~i~~IgaTt~~ 312 (852)
T TIGR03346 242 AGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG--A---MDAGNMLKPA----LARGELHCIGATTLD 312 (852)
T ss_pred hcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc--h---hHHHHHhchh----hhcCceEEEEeCcHH
Confidence 45788899999999998865 4589999999999986432211 1 1122222222 245678999999977
Q ss_pred C-----CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC
Q psy450 349 D-----LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD 392 (478)
Q Consensus 349 ~-----~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~ 392 (478)
+ ..|+++.| ||. .+.++. |+.+++..|++.+...+.....
T Consensus 313 e~r~~~~~d~al~r--Rf~-~i~v~~-p~~~~~~~iL~~~~~~~e~~~~ 357 (852)
T TIGR03346 313 EYRKYIEKDAALER--RFQ-PVFVDE-PTVEDTISILRGLKERYEVHHG 357 (852)
T ss_pred HHHHHhhcCHHHHh--cCC-EEEeCC-CCHHHHHHHHHHHHHHhccccC
Confidence 4 47999999 996 478886 6899999999988776655443
No 123
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.57 E-value=4e-13 Score=123.22 Aligned_cols=188 Identities=20% Similarity=0.317 Sum_probs=132.2
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhhhc
Q psy450 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKYIG 276 (478)
Q Consensus 200 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~~g 276 (478)
....+.+++++|++.+|+.|.+....... |.+..++||||++|||||++++++.+++ |..++.+...++..
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~---- 93 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD---- 93 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc----
Confidence 34577899999999999999988876653 5568899999999999999999999877 67888888766532
Q ss_pred chHHHHHHHHHHhHh-CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC--CCCeEEEEEcCCCCCCCc
Q psy450 277 QSEENIRNVFLKARS-AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT--SQDVFILGATNRVDLLDP 353 (478)
Q Consensus 277 ~~~~~~~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~v~vI~ttn~~~~ld~ 353 (478)
+..+++..+. ..+-|||+||+. +.. .+.-...|...++|.-. ..++++.+|+|+.+.+++
T Consensus 94 -----l~~l~~~l~~~~~kFIlf~DDLs--Fe~----------~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E 156 (249)
T PF05673_consen 94 -----LPELLDLLRDRPYKFILFCDDLS--FEE----------GDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPE 156 (249)
T ss_pred -----HHHHHHHHhcCCCCEEEEecCCC--CCC----------CcHHHHHHHHHhcCccccCCCcEEEEEecchhhccch
Confidence 3334444432 235699999853 211 12344666667776433 458999999998765543
Q ss_pred cccC---------------------CCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhc---CCCCCH
Q psy450 354 AILR---------------------PGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHF---PSQMSG 408 (478)
Q Consensus 354 ~l~~---------------------~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~---~~~~sg 408 (478)
.... ..||...+.|.. |+.++.++|++.+++..++.-+ ..+..-|.++ ..|.||
T Consensus 157 ~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~-~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSG 235 (249)
T PF05673_consen 157 SFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYP-PDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSG 235 (249)
T ss_pred hhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCH
Confidence 2211 239999999985 7999999999999987776654 2233322221 245677
Q ss_pred HHH
Q psy450 409 ADI 411 (478)
Q Consensus 409 ~di 411 (478)
+--
T Consensus 236 RtA 238 (249)
T PF05673_consen 236 RTA 238 (249)
T ss_pred HHH
Confidence 543
No 124
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.56 E-value=3.7e-14 Score=131.68 Aligned_cols=198 Identities=19% Similarity=0.279 Sum_probs=120.1
Q ss_pred CCCCCccccc-C--cHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh-----CCcEEEEechhhhh
Q psy450 201 VPNVSWEDIG-G--LSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC-----RMNFLAVKGPELLN 272 (478)
Q Consensus 201 ~~~~~~~~i~-g--~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~-----~~~~~~v~~~~l~~ 272 (478)
.|+.+|++++ | .+.+......+.. .++.....++||||+|+|||+|++++++++ +..++++++.++..
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~----~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~ 77 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAE----NPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIR 77 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHH----STTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHH
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHh----cCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHH
Confidence 4678899885 4 2333333333322 233334569999999999999999999875 56799999888876
Q ss_pred hhhcchHH-HHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC-
Q psy450 273 KYIGQSEE-NIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDL- 350 (478)
Q Consensus 273 ~~~g~~~~-~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~- 350 (478)
.+...... .+..+....+ ...+|+|||++.+.++ ..+...+...++.....++.+|+++...|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~-----------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 78 EFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK-----------QRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH-----------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred HHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc-----------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 55432222 1223333333 3469999999999742 2334445555554445566677776677654
Q ss_pred --CCccccCCCCCCeEEEeCC-CCCHHHHHHHHHHHHhcCCCCCCCC-HHHHHHhcCCCCCHHHHHHHHHHHH
Q psy450 351 --LDPAILRPGRLDKSLYVGL-YEDRISQLGVLKAVVRKFKLSDDVS-LDSLVHHFPSQMSGADIYSICSNAW 419 (478)
Q Consensus 351 --ld~~l~~~~Rf~~~i~~~~-pp~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~~~~sg~di~~l~~~a~ 419 (478)
+++.+.+ ||...+.+.+ ||+.+.|..|++..+...++.-+.+ +..|+.++ .-+.++|..++..-.
T Consensus 145 ~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~--~~~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 145 SGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRF--RRDVRELEGALNRLD 213 (219)
T ss_dssp TTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHT--TSSHHHHHHHHHHHH
T ss_pred cccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhh--cCCHHHHHHHHHHHH
Confidence 5677888 8887655555 5899999999998887665443222 66677775 345667766666544
No 125
>KOG0989|consensus
Probab=99.56 E-value=2e-14 Score=133.73 Aligned_cols=184 Identities=19% Similarity=0.245 Sum_probs=122.6
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCC------cEEEEechhhhh
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRM------NFLAVKGPELLN 272 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~------~~~~v~~~~l~~ 272 (478)
..+.+.+++++.|++.+.+.|...+.. .. ..++|||||||||||+.|+++|.++.. .+...+.++-.+
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~-~~-----lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderG 101 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLR-RI-----LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERG 101 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhh-cC-----CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccc
Confidence 445667899999999999999887765 11 456999999999999999999999865 233333333322
Q ss_pred hhhcchHHHHHHHHHHhHh---------CCC-eEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEE
Q psy450 273 KYIGQSEENIRNVFLKARS---------AAP-CVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFIL 342 (478)
Q Consensus 273 ~~~g~~~~~~~~~~~~a~~---------~~p-~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI 342 (478)
..+. ...+ .-|..... ..| .|++|||.|.+. ...+..|...|+.. ...+.+|
T Consensus 102 isvv--r~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-------------sdaq~aLrr~mE~~--s~~trFi 163 (346)
T KOG0989|consen 102 ISVV--REKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-------------SDAQAALRRTMEDF--SRTTRFI 163 (346)
T ss_pred ccch--hhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhh-------------HHHHHHHHHHHhcc--ccceEEE
Confidence 2111 1111 11222211 122 699999999997 46778899999863 4567788
Q ss_pred EEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCC-HHHHHHhcCCCCCHHHHHHHH
Q psy450 343 GATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVS-LDSLVHHFPSQMSGADIYSIC 415 (478)
Q Consensus 343 ~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~~~~sg~di~~l~ 415 (478)
..||.++.+.+.+.+ |+.+..+-+ ...+.....|+....+.++.-+.+ +..+++.. ++|++...
T Consensus 164 LIcnylsrii~pi~S--RC~KfrFk~--L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S-----~GdLR~Ai 228 (346)
T KOG0989|consen 164 LICNYLSRIIRPLVS--RCQKFRFKK--LKDEDIVDRLEKIASKEGVDIDDDALKLIAKIS-----DGDLRRAI 228 (346)
T ss_pred EEcCChhhCChHHHh--hHHHhcCCC--cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc-----CCcHHHHH
Confidence 889999999999999 986544443 355566667777776655543322 55555543 44665543
No 126
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.56 E-value=5.5e-14 Score=154.65 Aligned_cols=162 Identities=23% Similarity=0.344 Sum_probs=124.6
Q ss_pred CCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh----------CCcEEEEechhhh--
Q psy450 204 VSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC----------RMNFLAVKGPELL-- 271 (478)
Q Consensus 204 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~----------~~~~~~v~~~~l~-- 271 (478)
-.++.++|.++...++.+.+... ..++++|+||||||||++++.+|..+ +.+++.++...+.
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r~------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag 249 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGRR------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAG 249 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHccc------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhcc
Confidence 34788999999999988876533 25679999999999999999999986 3689999988876
Q ss_pred hhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC--
Q psy450 272 NKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD-- 349 (478)
Q Consensus 272 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~-- 349 (478)
.+|.|+.+..++.+++.+....++||||||+|.+.+.++..+.. .+.+.|...+ ..+.+.+|++|+..+
T Consensus 250 ~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~-----~~a~lLkp~l----~rg~l~~IgaTt~~ey~ 320 (821)
T CHL00095 250 TKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAI-----DAANILKPAL----ARGELQCIGATTLDEYR 320 (821)
T ss_pred CCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcc-----cHHHHhHHHH----hCCCcEEEEeCCHHHHH
Confidence 46789999999999999988888999999999998754322211 1222222222 356788999998764
Q ss_pred ---CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHH
Q psy450 350 ---LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVV 384 (478)
Q Consensus 350 ---~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~ 384 (478)
..|+++.+ ||. .+.++. |+.++...|++...
T Consensus 321 ~~ie~D~aL~r--Rf~-~I~v~e-p~~~e~~aILr~l~ 354 (821)
T CHL00095 321 KHIEKDPALER--RFQ-PVYVGE-PSVEETIEILFGLR 354 (821)
T ss_pred HHHhcCHHHHh--cce-EEecCC-CCHHHHHHHHHHHH
Confidence 36899999 996 467776 68888888887654
No 127
>PLN03025 replication factor C subunit; Provisional
Probab=99.56 E-value=1.5e-13 Score=135.57 Aligned_cols=184 Identities=22% Similarity=0.199 Sum_probs=121.8
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC-----CcEEEEechhhhhh
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR-----MNFLAVKGPELLNK 273 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~-----~~~~~v~~~~l~~~ 273 (478)
..+.+.++++++|++++++.|+..+... ...++||+||||||||++|+++|+++. ..++.++.++..+
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~- 77 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRG- 77 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccccc-
Confidence 3456778999999999999888765421 134699999999999999999999872 2355666544321
Q ss_pred hhcchHHHHHHHHHHhH-------hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcC
Q psy450 274 YIGQSEENIRNVFLKAR-------SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATN 346 (478)
Q Consensus 274 ~~g~~~~~~~~~~~~a~-------~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn 346 (478)
...++....... ...+.|++|||+|.+.. ...+.|+..++... ....+|.++|
T Consensus 78 -----~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~-------------~aq~aL~~~lE~~~--~~t~~il~~n 137 (319)
T PLN03025 78 -----IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS-------------GAQQALRRTMEIYS--NTTRFALACN 137 (319)
T ss_pred -----HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH-------------HHHHHHHHHHhccc--CCceEEEEeC
Confidence 112333322211 12357999999999963 23455666666432 3345667788
Q ss_pred CCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCC-CCCHHHHHHhcCCCCCHHHHHHHHHHH
Q psy450 347 RVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSD-DVSLDSLVHHFPSQMSGADIYSICSNA 418 (478)
Q Consensus 347 ~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~sg~di~~l~~~a 418 (478)
.++.+.+++++ |+ ..+.++. ++.++...+++..+++.++.- +..+..++..+ ++|++.+++..
T Consensus 138 ~~~~i~~~L~S--Rc-~~i~f~~-l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~-----~gDlR~aln~L 201 (319)
T PLN03025 138 TSSKIIEPIQS--RC-AIVRFSR-LSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTA-----DGDMRQALNNL 201 (319)
T ss_pred CccccchhHHH--hh-hcccCCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-----CCCHHHHHHHH
Confidence 88888899998 87 4677775 678888888888876655432 22366666654 24665555443
No 128
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=8.2e-14 Score=142.23 Aligned_cols=187 Identities=18% Similarity=0.215 Sum_probs=132.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCC--------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRM-------------------- 260 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~-------------------- 260 (478)
+.+.+|++++|++.+++.|...+. .+..++++||+||+|+|||++|+.+|+.+++
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~-----~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFT-----LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 445789999999999998886654 2333778999999999999999999987633
Q ss_pred ----cEEEEechhhhhhhhcchHHHHHHHHHHhHh----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC
Q psy450 261 ----NFLAVKGPELLNKYIGQSEENIRNVFLKARS----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG 332 (478)
Q Consensus 261 ----~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~ 332 (478)
.++.++.++ ......++.+.+.+.. ....|++|||+|.+. ....+.|++.++.
T Consensus 82 ~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls-------------~~A~NaLLK~LEe 142 (491)
T PRK14964 82 SNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS-------------NSAFNALLKTLEE 142 (491)
T ss_pred cCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC-------------HHHHHHHHHHHhC
Confidence 234454432 1234456666666532 345699999999986 3467889999985
Q ss_pred CCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHH
Q psy450 333 VHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADI 411 (478)
Q Consensus 333 ~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di 411 (478)
....+.+|.+|+.+..+.+.+++ |+ ..+.+.. ++.++...+++..+++.++.-+ ..+..++..+ +-+.+++
T Consensus 143 --Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~-l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s--~GslR~a 214 (491)
T PRK14964 143 --PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQK-IPTDKLVEHLVDIAKKENIEHDEESLKLIAENS--SGSMRNA 214 (491)
T ss_pred --CCCCeEEEEEeCChHHHHHHHHH--hh-eeeeccc-ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHH
Confidence 34567778788888889999998 88 4567764 6788888888888776654432 2255666665 3355566
Q ss_pred HHHHHHHH
Q psy450 412 YSICSNAW 419 (478)
Q Consensus 412 ~~l~~~a~ 419 (478)
.+.+..+.
T Consensus 215 lslLdqli 222 (491)
T PRK14964 215 LFLLEQAA 222 (491)
T ss_pred HHHHHHHH
Confidence 55555544
No 129
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.56 E-value=2e-13 Score=134.82 Aligned_cols=160 Identities=20% Similarity=0.232 Sum_probs=111.0
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcc
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQ 277 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~ 277 (478)
...+.+.++++++|++.+++.+...+. .+..++.+||+||||+|||++++++++.++.+++.+++.+ . . ...
T Consensus 12 ~~kyrP~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~-~-~~~ 83 (316)
T PHA02544 12 EQKYRPSTIDECILPAADKETFKSIVK-----KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C-R-IDF 83 (316)
T ss_pred eeccCCCcHHHhcCcHHHHHHHHHHHh-----cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c-c-HHH
Confidence 345667889999999999999888765 2333666777999999999999999999999999998865 1 1 111
Q ss_pred hHHHHHHHHHHhH-hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCcccc
Q psy450 278 SEENIRNVFLKAR-SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAIL 356 (478)
Q Consensus 278 ~~~~~~~~~~~a~-~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~ 356 (478)
....+........ ...+.+|+|||+|.+... .....+...++.. ..++.+|++||.+..+.++++
T Consensus 84 i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~------------~~~~~L~~~le~~--~~~~~~Ilt~n~~~~l~~~l~ 149 (316)
T PHA02544 84 VRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA------------DAQRHLRSFMEAY--SKNCSFIITANNKNGIIEPLR 149 (316)
T ss_pred HHHHHHHHHHhhcccCCCeEEEEECcccccCH------------HHHHHHHHHHHhc--CCCceEEEEcCChhhchHHHH
Confidence 1111222211111 135689999999988321 1223333445532 345678889999999999999
Q ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHHH
Q psy450 357 RPGRLDKSLYVGLYEDRISQLGVLKAV 383 (478)
Q Consensus 357 ~~~Rf~~~i~~~~pp~~~~r~~il~~~ 383 (478)
+ ||. .+.++. |+.+++..+++.+
T Consensus 150 s--R~~-~i~~~~-p~~~~~~~il~~~ 172 (316)
T PHA02544 150 S--RCR-VIDFGV-PTKEEQIEMMKQM 172 (316)
T ss_pred h--hce-EEEeCC-CCHHHHHHHHHHH
Confidence 9 985 677776 6788887776654
No 130
>PRK06893 DNA replication initiation factor; Validated
Probab=99.55 E-value=3.3e-13 Score=126.48 Aligned_cols=211 Identities=12% Similarity=0.130 Sum_probs=121.0
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhh
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKY 274 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~ 274 (478)
....+..+|+++++.++.. .+........ ......++|||||||||||+++++|+++ +....+++......
T Consensus 7 ~~~~~~~~fd~f~~~~~~~-~~~~~~~~~~---~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~-- 80 (229)
T PRK06893 7 IHQIDDETLDNFYADNNLL-LLDSLRKNFI---DLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY-- 80 (229)
T ss_pred CCCCCcccccccccCChHH-HHHHHHHHhh---ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh--
Confidence 3445678899988765432 1222211111 1123458999999999999999999886 44556666532211
Q ss_pred hcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCC-eEEEEEcCCCCCCC-
Q psy450 275 IGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQD-VFILGATNRVDLLD- 352 (478)
Q Consensus 275 ~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-v~vI~ttn~~~~ld- 352 (478)
....+++... +..+|+|||++.+.+.. .+ ...+..+++.+ ...++ ++|++++..|..++
T Consensus 81 ------~~~~~~~~~~--~~dlLilDDi~~~~~~~-------~~-~~~l~~l~n~~---~~~~~~illits~~~p~~l~~ 141 (229)
T PRK06893 81 ------FSPAVLENLE--QQDLVCLDDLQAVIGNE-------EW-ELAIFDLFNRI---KEQGKTLLLISADCSPHALSI 141 (229)
T ss_pred ------hhHHHHhhcc--cCCEEEEeChhhhcCCh-------HH-HHHHHHHHHHH---HHcCCcEEEEeCCCChHHccc
Confidence 1112333333 34699999999987432 11 22333333333 23333 34455555565544
Q ss_pred --ccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhc--CCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy450 353 --PAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRK--FKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIIT 428 (478)
Q Consensus 353 --~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~ 428 (478)
+.+++..+++..+.++. |+.+++..|++..+.. +.+++++ +..|+.++ +-+.+.+..++......+..
T Consensus 142 ~~~~L~sRl~~g~~~~l~~-pd~e~~~~iL~~~a~~~~l~l~~~v-~~~L~~~~--~~d~r~l~~~l~~l~~~~~~---- 213 (229)
T PRK06893 142 KLPDLASRLTWGEIYQLND-LTDEQKIIVLQRNAYQRGIELSDEV-ANFLLKRL--DRDMHTLFDALDLLDKASLQ---- 213 (229)
T ss_pred cchhHHHHHhcCCeeeCCC-CCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhc--cCCHHHHHHHHHHHHHHHHh----
Confidence 78888333345666664 7999999999877654 4444443 77778776 22444555555543221111
Q ss_pred cCCCCCCCCccccHHHHHhc
Q psy450 429 SAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 429 ~~~~~~~~~~~it~~d~~~A 448 (478)
....||...++++
T Consensus 214 -------~~~~it~~~v~~~ 226 (229)
T PRK06893 214 -------AQRKLTIPFVKEI 226 (229)
T ss_pred -------cCCCCCHHHHHHH
Confidence 1336888888776
No 131
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.55 E-value=2.4e-13 Score=127.91 Aligned_cols=206 Identities=16% Similarity=0.129 Sum_probs=119.8
Q ss_pred CCCCCCccccc-C-cHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhh
Q psy450 200 SVPNVSWEDIG-G-LSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKY 274 (478)
Q Consensus 200 ~~~~~~~~~i~-g-~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~ 274 (478)
-.+..+|++++ | ...+...+....... ...+++|+|||||||||+++++++.+ +..+.+++.......
T Consensus 15 ~~~~~~fd~f~~~~n~~a~~~l~~~~~~~------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~- 87 (235)
T PRK08084 15 LPDDETFASFYPGDNDSLLAALQNALRQE------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF- 87 (235)
T ss_pred CCCcCCccccccCccHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh-
Confidence 34566788876 3 344444444433211 13579999999999999999999876 345666666543211
Q ss_pred hcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCC-eEEEEEcCCCCC---
Q psy450 275 IGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQD-VFILGATNRVDL--- 350 (478)
Q Consensus 275 ~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-v~vI~ttn~~~~--- 350 (478)
..++++.... ..+|+|||++.+.++. .+ +..+..++..+ ...++ .+++++++.|..
T Consensus 88 -------~~~~~~~~~~--~dlliiDdi~~~~~~~-------~~-~~~lf~l~n~~---~e~g~~~li~ts~~~p~~l~~ 147 (235)
T PRK08084 88 -------VPEVLEGMEQ--LSLVCIDNIECIAGDE-------LW-EMAIFDLYNRI---LESGRTRLLITGDRPPRQLNL 147 (235)
T ss_pred -------hHHHHHHhhh--CCEEEEeChhhhcCCH-------HH-HHHHHHHHHHH---HHcCCCeEEEeCCCChHHcCc
Confidence 1122222222 2589999999986432 11 22233333322 22333 344444455544
Q ss_pred CCccccCCCCCCeEEEeCC-CCCHHHHHHHHHHHHhc--CCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy450 351 LDPAILRPGRLDKSLYVGL-YEDRISQLGVLKAVVRK--FKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRII 427 (478)
Q Consensus 351 ld~~l~~~~Rf~~~i~~~~-pp~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~ 427 (478)
+.+.+++ |+...+.+.+ ||+.+++..+++..... +.+++++ ++.|++++ .-+.+.+..++......+..
T Consensus 148 ~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v-~~~L~~~~--~~d~r~l~~~l~~l~~~~l~--- 219 (235)
T PRK08084 148 GLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDV-GRFLLKRL--DREMRTLFMTLDQLDRASIT--- 219 (235)
T ss_pred ccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhh--cCCHHHHHHHHHHHHHHHHh---
Confidence 5789999 9874444444 47899999999875554 4444444 77888876 23455666666553222211
Q ss_pred hcCCCCCCCCccccHHHHHhc
Q psy450 428 TSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 428 ~~~~~~~~~~~~it~~d~~~A 448 (478)
....||.+.++++
T Consensus 220 --------~~~~it~~~~k~~ 232 (235)
T PRK08084 220 --------AQRKLTIPFVKEI 232 (235)
T ss_pred --------cCCCCCHHHHHHH
Confidence 1335888888776
No 132
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=2.5e-13 Score=140.39 Aligned_cols=172 Identities=20% Similarity=0.314 Sum_probs=122.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc-------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------- 261 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------- 261 (478)
+.+.+|++++|++++++.|...+.. +..++.+||+||||||||++|+++|+.+.+.
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~-----~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~ 82 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQ-----GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRG 82 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcC
Confidence 4567899999999999999887664 2236667999999999999999999988531
Q ss_pred ----EEEEechhhhhhhhcchHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCC
Q psy450 262 ----FLAVKGPELLNKYIGQSEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGV 333 (478)
Q Consensus 262 ----~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 333 (478)
++.++... ......++++...+. ...+.|++|||+|.+. ...++.|+..++.
T Consensus 83 ~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-------------~~a~naLLk~LEe- 142 (504)
T PRK14963 83 AHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-------------KSAFNALLKTLEE- 142 (504)
T ss_pred CCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-------------HHHHHHHHHHHHh-
Confidence 33444321 122334555544432 2346799999999775 3457788888875
Q ss_pred CCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCC-CHHHHHHhc
Q psy450 334 HTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDV-SLDSLVHHF 402 (478)
Q Consensus 334 ~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~ 402 (478)
....+++|.+++.+..+.+.+++ |+. .+.|.. ++.++...+++..+++.++..+. .+..++..+
T Consensus 143 -p~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~-ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s 207 (504)
T PRK14963 143 -PPEHVIFILATTEPEKMPPTILS--RTQ-HFRFRR-LTEEEIAGKLRRLLEAEGREAEPEALQLVARLA 207 (504)
T ss_pred -CCCCEEEEEEcCChhhCChHHhc--ceE-EEEecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 33467777788888999999998 874 677775 68888888998888766654322 255566654
No 133
>PRK05642 DNA replication initiation factor; Validated
Probab=99.54 E-value=5.7e-13 Score=125.21 Aligned_cols=212 Identities=15% Similarity=0.161 Sum_probs=127.6
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhhhhh-CCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGVNRT-SGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK 273 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~-~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~ 273 (478)
....|..+|++++.-.. ......+..+... .+.....++|+||+|+|||||++++++++ +..+++++..++...
T Consensus 10 ~~~~~~~tfdnF~~~~~--~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~ 87 (234)
T PRK05642 10 VRLRDDATFANYYPGAN--AAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR 87 (234)
T ss_pred CCCCCcccccccCcCCh--HHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh
Confidence 44456778888763221 2223333222111 12224679999999999999999998765 578888988777542
Q ss_pred hhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC---
Q psy450 274 YIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDL--- 350 (478)
Q Consensus 274 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~--- 350 (478)
. ..+.+..... .+|+|||++.+.++. .....|...++.....++.++++++..|..
T Consensus 88 ~--------~~~~~~~~~~--d~LiiDDi~~~~~~~-----------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~ 146 (234)
T PRK05642 88 G--------PELLDNLEQY--ELVCLDDLDVIAGKA-----------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPI 146 (234)
T ss_pred h--------HHHHHhhhhC--CEEEEechhhhcCCh-----------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCc
Confidence 1 2233333333 589999999886432 112233334443334456677766666643
Q ss_pred CCccccCCCCCCeEEEeCC-CCCHHHHHHHHHHHHhcC--CCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy450 351 LDPAILRPGRLDKSLYVGL-YEDRISQLGVLKAVVRKF--KLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRII 427 (478)
Q Consensus 351 ld~~l~~~~Rf~~~i~~~~-pp~~~~r~~il~~~~~~~--~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~ 427 (478)
..+.+++ ||...+.+.+ ||+.+++..+++...... .+++++ ++.++.+. .-+.+.+..++..-...+...
T Consensus 147 ~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev-~~~L~~~~--~~d~r~l~~~l~~l~~~~l~~-- 219 (234)
T PRK05642 147 KLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEV-GHFILTRG--TRSMSALFDLLERLDQASLQA-- 219 (234)
T ss_pred cCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhc--CCCHHHHHHHHHHHHHHHHHc--
Confidence 3688898 9976665544 468999999998555443 344333 67777765 345566666655443322221
Q ss_pred hcCCCCCCCCccccHHHHHhc
Q psy450 428 TSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 428 ~~~~~~~~~~~~it~~d~~~A 448 (478)
..+||..-++++
T Consensus 220 ---------~~~it~~~~~~~ 231 (234)
T PRK05642 220 ---------QRKLTIPFLKET 231 (234)
T ss_pred ---------CCcCCHHHHHHH
Confidence 235777766665
No 134
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1.4e-13 Score=143.87 Aligned_cols=187 Identities=20% Similarity=0.223 Sum_probs=132.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcE------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNF------------------ 262 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~------------------ 262 (478)
+.+.+|++++|++.+++.|...+.. +..++++||+||+|||||++|+++|+.+++.-
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~~-----~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~ 84 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDE-----GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDA 84 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhc
Confidence 4567899999999999999887663 23367899999999999999999999886531
Q ss_pred ------EEEechhhhhhhhcchHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC
Q psy450 263 ------LAVKGPELLNKYIGQSEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG 332 (478)
Q Consensus 263 ------~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~ 332 (478)
+.++.+ .+.....++.++..+. .....|++|||+|.+. ....+.|++.++.
T Consensus 85 g~~~DvlEidaA------s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-------------~~A~NALLKtLEE 145 (709)
T PRK08691 85 GRYVDLLEIDAA------SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-------------KSAFNAMLKTLEE 145 (709)
T ss_pred cCccceEEEecc------ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-------------HHHHHHHHHHHHh
Confidence 122211 1123345666666542 2345799999999875 3456788888885
Q ss_pred CCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCC-CHHHHHHhcCCCCCHHHH
Q psy450 333 VHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDV-SLDSLVHHFPSQMSGADI 411 (478)
Q Consensus 333 ~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~sg~di 411 (478)
....+.+|.+|+.+..+.+.+++ |+ ..+.|.. ++.++...+++..+++.++.-+. .+..|++.. +-+.+++
T Consensus 146 --Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~-Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdA 217 (709)
T PRK08691 146 --PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRN-MTAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDA 217 (709)
T ss_pred --CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCC-CCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHH
Confidence 34567778888889999999997 88 4555554 68888888998888876654332 256666654 3455666
Q ss_pred HHHHHHHH
Q psy450 412 YSICSNAW 419 (478)
Q Consensus 412 ~~l~~~a~ 419 (478)
.+++..+.
T Consensus 218 lnLLDqai 225 (709)
T PRK08691 218 LSLLDQAI 225 (709)
T ss_pred HHHHHHHH
Confidence 66665544
No 135
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.54 E-value=1.3e-13 Score=136.10 Aligned_cols=168 Identities=24% Similarity=0.369 Sum_probs=122.8
Q ss_pred cccCcHHHHHHHHHHHHhhhhhC--------CCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh-hhhc-c
Q psy450 208 DIGGLSKLKAEILSTFRGVNRTS--------GLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN-KYIG-Q 277 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~~~~~--------~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~-~~~g-~ 277 (478)
.++|++.+|+.+...+.....+. ...|.++||+||||||||++|+++|+.++.+|+.++++.+.. .|.| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 48999999999988876532221 122689999999999999999999999999999999987774 5666 3
Q ss_pred hHHHHHHHHHHhH-------------------------------------------------------------------
Q psy450 278 SEENIRNVFLKAR------------------------------------------------------------------- 290 (478)
Q Consensus 278 ~~~~~~~~~~~a~------------------------------------------------------------------- 290 (478)
.+..++.++..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 3455555554440
Q ss_pred -----------------------------------------------------------------------hCCCeEEEE
Q psy450 291 -----------------------------------------------------------------------SAAPCVVFF 299 (478)
Q Consensus 291 -----------------------------------------------------------------------~~~p~il~i 299 (478)
....+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013469999
Q ss_pred cCCccccCCCCCC-CCCchhHHHHHHHHHHhhcCCCC--------CCCeEEEEEcC----CCCCCCccccCCCCCCeEEE
Q psy450 300 DELDSLAPRRGQE-DQSSGVMDRVVSQLLAEMDGVHT--------SQDVFILGATN----RVDLLDPAILRPGRLDKSLY 366 (478)
Q Consensus 300 Deid~l~~~~~~~-~~~~~~~~~~~~~ll~~l~~~~~--------~~~v~vI~ttn----~~~~ld~~l~~~~Rf~~~i~ 366 (478)
||||+++.+.++. .+.++ ..+...||..++|..- ..++++||+.- .|+.|-|.|.- ||...+.
T Consensus 256 DEiDKIa~~~~~~~~DvS~--eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~ 331 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSR--EGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVE 331 (443)
T ss_pred EcchhhcccCCCCCCCCCc--cchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEE
Confidence 9999999764321 12222 3577888888887432 45678887653 46667778875 9999999
Q ss_pred eCCCCCHHHHHHHH
Q psy450 367 VGLYEDRISQLGVL 380 (478)
Q Consensus 367 ~~~pp~~~~r~~il 380 (478)
+.. .+.++...||
T Consensus 332 L~~-L~~~dL~~IL 344 (443)
T PRK05201 332 LDA-LTEEDFVRIL 344 (443)
T ss_pred CCC-CCHHHHHHHh
Confidence 975 7999988888
No 136
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.54 E-value=1.3e-13 Score=135.94 Aligned_cols=168 Identities=22% Similarity=0.348 Sum_probs=121.1
Q ss_pred cccCcHHHHHHHHHHHHhhhhh--------CCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh-hhhc-c
Q psy450 208 DIGGLSKLKAEILSTFRGVNRT--------SGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN-KYIG-Q 277 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~~~~--------~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~-~~~g-~ 277 (478)
.++|++++|+.+...+.....+ ....|+++||+||||||||++|+++|+.++.+|+.+++..+.. .|.| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 4799999999998777653221 1223789999999999999999999999999999999877653 4555 3
Q ss_pred hHHHHHHHHHHh--------------------------------------------------------------------
Q psy450 278 SEENIRNVFLKA-------------------------------------------------------------------- 289 (478)
Q Consensus 278 ~~~~~~~~~~~a-------------------------------------------------------------------- 289 (478)
.+..++.+|..|
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 445555444443
Q ss_pred -----------------------------------------------------------------------HhCCCeEEE
Q psy450 290 -----------------------------------------------------------------------RSAAPCVVF 298 (478)
Q Consensus 290 -----------------------------------------------------------------------~~~~p~il~ 298 (478)
+.....|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 011346999
Q ss_pred EcCCccccCCCCCC-CCCchhHHHHHHHHHHhhcCCCC--------CCCeEEEEEcC----CCCCCCccccCCCCCCeEE
Q psy450 299 FDELDSLAPRRGQE-DQSSGVMDRVVSQLLAEMDGVHT--------SQDVFILGATN----RVDLLDPAILRPGRLDKSL 365 (478)
Q Consensus 299 iDeid~l~~~~~~~-~~~~~~~~~~~~~ll~~l~~~~~--------~~~v~vI~ttn----~~~~ld~~l~~~~Rf~~~i 365 (478)
|||||+++.+..+. .+.++ ..+...||..++|..- ..++++|++.- .|+.|=|.|.- ||...+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~--eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v 328 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSR--EGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRV 328 (441)
T ss_pred EEchhhhcccCCCCCCCCCc--cchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEE
Confidence 99999999764221 12222 3577888888887432 45678887654 45666677775 999999
Q ss_pred EeCCCCCHHHHHHHH
Q psy450 366 YVGLYEDRISQLGVL 380 (478)
Q Consensus 366 ~~~~pp~~~~r~~il 380 (478)
.+.. .+.++...||
T Consensus 329 ~L~~-L~~edL~rIL 342 (441)
T TIGR00390 329 ELQA-LTTDDFERIL 342 (441)
T ss_pred ECCC-CCHHHHHHHh
Confidence 9985 7999988888
No 137
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=3.1e-13 Score=141.26 Aligned_cols=185 Identities=15% Similarity=0.174 Sum_probs=126.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc-------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------- 261 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------- 261 (478)
+.+.+|++++|++.+++.|...+.. +..++.+||+||+|||||++|+++|+.+.+.
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~~-----~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 81 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALDA-----GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAP 81 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhc
Confidence 4456899999999999999887653 3336668999999999999999999988642
Q ss_pred -------EEEEechhhhhhhhcchHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhh
Q psy450 262 -------FLAVKGPELLNKYIGQSEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEM 330 (478)
Q Consensus 262 -------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l 330 (478)
++.++.+. ......++++.+.+. .....|++|||+|.+. ....+.|++.+
T Consensus 82 ~~~~~~dvieidaas------~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt-------------~~A~NALLK~L 142 (584)
T PRK14952 82 NGPGSIDVVELDAAS------HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT-------------TAGFNALLKIV 142 (584)
T ss_pred ccCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC-------------HHHHHHHHHHH
Confidence 22222211 112334444443332 2345699999999996 34678899999
Q ss_pred cCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCC-CHHHHHHhcCCCCCHH
Q psy450 331 DGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDV-SLDSLVHHFPSQMSGA 409 (478)
Q Consensus 331 ~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~sg~ 409 (478)
+. ....+++|.+|+.++.+.+.+++ |+ ..+.|.. ++.++..++++..+++.++.-+. .+..++... +-+.+
T Consensus 143 EE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~-l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s--~GdlR 214 (584)
T PRK14952 143 EE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRL-LPPRTMRALIARICEQEGVVVDDAVYPLVIRAG--GGSPR 214 (584)
T ss_pred hc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHH
Confidence 85 45578888888888999999998 86 5777775 57788888888887766643332 244455443 33444
Q ss_pred HHHHHHHH
Q psy450 410 DIYSICSN 417 (478)
Q Consensus 410 di~~l~~~ 417 (478)
+..+++..
T Consensus 215 ~aln~Ldq 222 (584)
T PRK14952 215 DTLSVLDQ 222 (584)
T ss_pred HHHHHHHH
Confidence 44444443
No 138
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.53 E-value=1.8e-13 Score=140.13 Aligned_cols=202 Identities=13% Similarity=0.242 Sum_probs=123.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh-----CCcEEEEechhhhhhhhcc
Q psy450 203 NVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC-----RMNFLAVKGPELLNKYIGQ 277 (478)
Q Consensus 203 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~-----~~~~~~v~~~~l~~~~~g~ 277 (478)
..+|++++.-+.....+. .+......++...++++|||++|+|||+|++++++++ +..++++++.++...+...
T Consensus 111 ~~tFdnFv~g~~n~~A~~-aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~ 189 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFI-AVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDI 189 (450)
T ss_pred ccchhcccCCCcHHHHHH-HHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHH
Confidence 467888763332222222 2222223334345679999999999999999999865 4688899998887665433
Q ss_pred hHH---HHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC---CC
Q psy450 278 SEE---NIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD---LL 351 (478)
Q Consensus 278 ~~~---~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~---~l 351 (478)
... .+..+.... ..+.+|+|||++.+.++. .....+..+++.+ ...++.+|+++...|. .+
T Consensus 190 l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~k~--------~~~e~lf~l~N~~---~~~~k~iIltsd~~P~~l~~l 256 (450)
T PRK14087 190 LQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSYKE--------KTNEIFFTIFNNF---IENDKQLFFSSDKSPELLNGF 256 (450)
T ss_pred HHHhhhHHHHHHHHh--ccCCEEEEeccccccCCH--------HHHHHHHHHHHHH---HHcCCcEEEECCCCHHHHhhc
Confidence 221 222222222 345699999999887432 1122333333333 2333444444334443 35
Q ss_pred CccccCCCCCCeEEEeCC-CCCHHHHHHHHHHHHhcCCC----CCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q psy450 352 DPAILRPGRLDKSLYVGL-YEDRISQLGVLKAVVRKFKL----SDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAI 423 (478)
Q Consensus 352 d~~l~~~~Rf~~~i~~~~-pp~~~~r~~il~~~~~~~~~----~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~ 423 (478)
++.+.+ ||...+.+++ ||+.++|..|++..++..++ +.+ -+..|+..+ +-+.+.+..+|..+...+.
T Consensus 257 ~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~e-vl~~Ia~~~--~gd~R~L~gaL~~l~~~a~ 328 (450)
T PRK14087 257 DNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEE-AINFISNYY--SDDVRKIKGSVSRLNFWSQ 328 (450)
T ss_pred cHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHH-HHHHHHHcc--CCCHHHHHHHHHHHHHHHh
Confidence 788888 9987777777 68999999999988876442 222 266677665 2356677777776654443
No 139
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=4.8e-13 Score=140.50 Aligned_cols=186 Identities=21% Similarity=0.256 Sum_probs=130.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCC--------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRM-------------------- 260 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~-------------------- 260 (478)
+.+.+|++++|++.+++.|...+.. +..++.+||+||+|||||++|+.+|+.+.+
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~-----~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQ-----GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITN 84 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhc
Confidence 3456799999999999999887654 223667999999999999999999998753
Q ss_pred ----cEEEEechhhhhhhhcchHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC
Q psy450 261 ----NFLAVKGPELLNKYIGQSEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG 332 (478)
Q Consensus 261 ----~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~ 332 (478)
.++.++.+ .+.....++++...+. .....|++|||+|.|. ....+.|++.++.
T Consensus 85 g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt-------------~~a~naLLKtLEe 145 (559)
T PRK05563 85 GSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS-------------TGAFNALLKTLEE 145 (559)
T ss_pred CCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-------------HHHHHHHHHHhcC
Confidence 23333321 1234455667766654 2345699999999986 3467889998885
Q ss_pred CCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHH
Q psy450 333 VHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADI 411 (478)
Q Consensus 333 ~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di 411 (478)
. ...+++|.+|+.++.+++.+++ |+. .+.|.. ++..+...+++..+++.++.-+ ..+..++... +| +.++.
T Consensus 146 p--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~-~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s-~G-~~R~a 217 (559)
T PRK05563 146 P--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKR-ISVEDIVERLKYILDKEGIEYEDEALRLIARAA-EG-GMRDA 217 (559)
T ss_pred C--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CC-CHHHH
Confidence 3 4567777778889999999998 885 566765 6788888888888876665433 2255566654 33 44455
Q ss_pred HHHHHHH
Q psy450 412 YSICSNA 418 (478)
Q Consensus 412 ~~l~~~a 418 (478)
.+++..+
T Consensus 218 l~~Ldq~ 224 (559)
T PRK05563 218 LSILDQA 224 (559)
T ss_pred HHHHHHH
Confidence 4444433
No 140
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2.5e-13 Score=141.46 Aligned_cols=172 Identities=16% Similarity=0.193 Sum_probs=119.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc-------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------- 261 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------- 261 (478)
+.+.+|++|+|++.+++.|...+.. +.-+.++||+||+|||||++|+.+|+.+.+.
T Consensus 10 yRP~sf~dIiGQe~v~~~L~~ai~~-----~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~ 84 (624)
T PRK14959 10 YRPQTFAEVAGQETVKAILSRAAQE-----NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQ 84 (624)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHc-----CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhc
Confidence 4567899999999999999887753 2226679999999999999999999998653
Q ss_pred -----EEEEechhhhhhhhcchHHHHHHHHHHh----HhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC
Q psy450 262 -----FLAVKGPELLNKYIGQSEENIRNVFLKA----RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG 332 (478)
Q Consensus 262 -----~~~v~~~~l~~~~~g~~~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~ 332 (478)
++.++... ...-..++.+.+.+ ......|++|||+|.+. ....+.|++.++.
T Consensus 85 g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt-------------~~a~naLLk~LEE 145 (624)
T PRK14959 85 GMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT-------------REAFNALLKTLEE 145 (624)
T ss_pred CCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC-------------HHHHHHHHHHhhc
Confidence 33343211 01122333332222 23345799999999996 3457888888885
Q ss_pred CCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhc
Q psy450 333 VHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHF 402 (478)
Q Consensus 333 ~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~ 402 (478)
...++++|++|+.+..+.+.+++ |+. .+.|.. ++.++...+++..+.+.++.-+ ..+..++..+
T Consensus 146 --P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~p-Ls~~eL~~~L~~il~~egi~id~eal~lIA~~s 210 (624)
T PRK14959 146 --PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTR-LSEAGLEAHLTKVLGREGVDYDPAAVRLIARRA 210 (624)
T ss_pred --cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 34567888888888888889998 884 567765 6788888888877766554322 2255555544
No 141
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=3.8e-13 Score=139.30 Aligned_cols=186 Identities=18% Similarity=0.234 Sum_probs=125.4
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCC---------------------
Q psy450 202 PNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRM--------------------- 260 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~--------------------- 260 (478)
.+.+|++++|++.+++.|...+.. +..++.+||+||+|+|||++|+.+|+.+.+
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~-----~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~ 85 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALET-----QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNN 85 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcC
Confidence 456799999999999998877653 222666899999999999999999998864
Q ss_pred ---cEEEEechhhhhhhhcchHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCC
Q psy450 261 ---NFLAVKGPELLNKYIGQSEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGV 333 (478)
Q Consensus 261 ---~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 333 (478)
.++.++...- .....++.+++.+. .+...|++|||+|.+. ....+.|++.++.
T Consensus 86 ~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls-------------~~a~naLLK~LEe- 145 (546)
T PRK14957 86 SFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS-------------KQSFNALLKTLEE- 145 (546)
T ss_pred CCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc-------------HHHHHHHHHHHhc-
Confidence 2233332110 11223444544433 2345699999999986 3567889999885
Q ss_pred CCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCC-CHHHHHHhcCCCCCHHHHH
Q psy450 334 HTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDV-SLDSLVHHFPSQMSGADIY 412 (478)
Q Consensus 334 ~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~sg~di~ 412 (478)
....+.+|++|+.+..+.+.+++ |+ ..+.+.. ++.++...+++..+++.++..+. .+..++..+ +-+.+++.
T Consensus 146 -pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~-Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s--~GdlR~al 218 (546)
T PRK14957 146 -PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKH-ISQADIKDQLKIILAKENINSDEQSLEYIAYHA--KGSLRDAL 218 (546)
T ss_pred -CCCCceEEEEECChhhhhhhHHH--he-eeEEeCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHH
Confidence 34556677777778888888988 88 6777775 67888888888877766554332 245555554 33444444
Q ss_pred HHHHHHH
Q psy450 413 SICSNAW 419 (478)
Q Consensus 413 ~l~~~a~ 419 (478)
+++..+.
T Consensus 219 nlLek~i 225 (546)
T PRK14957 219 SLLDQAI 225 (546)
T ss_pred HHHHHHH
Confidence 5544433
No 142
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.5e-13 Score=142.46 Aligned_cols=185 Identities=15% Similarity=0.189 Sum_probs=128.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc-------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------- 261 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------- 261 (478)
+.+.+|++++|++.+++.|...+..- ..++.+||+||+|||||++|+++|+.+++.
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~~~-----rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C 84 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALTQQ-----RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQAC 84 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHH
Confidence 34568999999999999988876532 236678999999999999999999998652
Q ss_pred ----------EEEEechhhhhhhhcchHHHHHHHHHHhHh----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHH
Q psy450 262 ----------FLAVKGPELLNKYIGQSEENIRNVFLKARS----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLL 327 (478)
Q Consensus 262 ----------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll 327 (478)
++.++.. .......++++.+.+.. +...|++|||+|.|. ....+.|+
T Consensus 85 ~~i~~g~h~D~~eldaa------s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls-------------~~a~NaLL 145 (618)
T PRK14951 85 RDIDSGRFVDYTELDAA------SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT-------------NTAFNAML 145 (618)
T ss_pred HHHHcCCCCceeecCcc------cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC-------------HHHHHHHH
Confidence 2222211 11223356666665432 234699999999997 34578888
Q ss_pred HhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCC-CHHHHHHhcCCCC
Q psy450 328 AEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDV-SLDSLVHHFPSQM 406 (478)
Q Consensus 328 ~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~ 406 (478)
+.++. ....+.+|.+|+.++.+.+.+++ |+ ..+.+.. ++.++...+++..+.+.++..+. .+..++... + -
T Consensus 146 KtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~-Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s-~-G 217 (618)
T PRK14951 146 KTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRP-MAPETVLEHLTQVLAAENVPAEPQALRLLARAA-R-G 217 (618)
T ss_pred Hhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-C-C
Confidence 88885 34567777788888889889998 87 5677765 67888888888887766654332 256666654 3 3
Q ss_pred CHHHHHHHHHH
Q psy450 407 SGADIYSICSN 417 (478)
Q Consensus 407 sg~di~~l~~~ 417 (478)
+.+++.+++..
T Consensus 218 slR~al~lLdq 228 (618)
T PRK14951 218 SMRDALSLTDQ 228 (618)
T ss_pred CHHHHHHHHHH
Confidence 44555555443
No 143
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=2.8e-13 Score=146.84 Aligned_cols=172 Identities=15% Similarity=0.166 Sum_probs=120.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc-------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------- 261 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------- 261 (478)
+...+|++|+|++.+++.|+..+.. +..++.+||+||+|||||++|+.+|+.+.+.
T Consensus 9 yRP~~f~eiiGqe~v~~~L~~~i~~-----~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 9 YRPATFAEVIGQEHVTEPLSTALDS-----GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAP 83 (824)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHh-----CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHc
Confidence 4456899999999999999887653 2235668999999999999999999999652
Q ss_pred -------EEEEechhhhhhhhcchHHHHHHHHHHh----HhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhh
Q psy450 262 -------FLAVKGPELLNKYIGQSEENIRNVFLKA----RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEM 330 (478)
Q Consensus 262 -------~~~v~~~~l~~~~~g~~~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l 330 (478)
++.++... ......++++.+.+ ......|+||||+|.|. ....+.|++.+
T Consensus 84 g~~~~~dv~eidaas------~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt-------------~~a~NaLLK~L 144 (824)
T PRK07764 84 GGPGSLDVTEIDAAS------HGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT-------------PQGFNALLKIV 144 (824)
T ss_pred CCCCCCcEEEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC-------------HHHHHHHHHHH
Confidence 22222211 01223344443332 23455799999999997 35678899999
Q ss_pred cCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCC-CHHHHHHhc
Q psy450 331 DGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDV-SLDSLVHHF 402 (478)
Q Consensus 331 ~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~ 402 (478)
+.. ...+++|++|+.++.|.+.|++ |+ ..+.|.. +..++...+++..+++.++..+. .+..++...
T Consensus 145 EEp--P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~-l~~~~l~~~L~~il~~EGv~id~eal~lLa~~s 211 (824)
T PRK07764 145 EEP--PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRL-VPPEVMRGYLERICAQEGVPVEPGVLPLVIRAG 211 (824)
T ss_pred hCC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 853 4567777788888889899998 87 5667765 57788888888887666554322 244455543
No 144
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.7e-13 Score=142.93 Aligned_cols=187 Identities=17% Similarity=0.203 Sum_probs=129.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc-------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------- 261 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------- 261 (478)
+.+.+|++++|++.+++.|...+.. +..++.+||+||+|+|||++|+.+|+.+++.
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~~-----~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~ 84 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALEQ-----QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDS 84 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc-----CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 3456899999999999998877653 2236678999999999999999999998652
Q ss_pred -----EEEEechhhhhhhhcchHHHHHHHHHHhHh----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC
Q psy450 262 -----FLAVKGPELLNKYIGQSEENIRNVFLKARS----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG 332 (478)
Q Consensus 262 -----~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~ 332 (478)
++.++.+ .......++.+...+.. ....|++|||+|.+. ....+.|++.++.
T Consensus 85 ~~~~d~~ei~~~------~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls-------------~~a~naLLK~LEe 145 (527)
T PRK14969 85 GRFVDLIEVDAA------SNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS-------------KSAFNAMLKTLEE 145 (527)
T ss_pred CCCCceeEeecc------ccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC-------------HHHHHHHHHHHhC
Confidence 1222211 01234456666665532 334699999999986 3467889999985
Q ss_pred CCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCC-CHHHHHHhcCCCCCHHHH
Q psy450 333 VHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDV-SLDSLVHHFPSQMSGADI 411 (478)
Q Consensus 333 ~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~sg~di 411 (478)
....+.+|.+|+.++.+.+.+++ |+ ..+.|.. ++.++....++..+++.++..+. .+..++..+ +-+.++.
T Consensus 146 --pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~-l~~~~i~~~L~~il~~egi~~~~~al~~la~~s--~Gslr~a 217 (527)
T PRK14969 146 --PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQ-MPPPLIVSHLQHILEQENIPFDATALQLLARAA--AGSMRDA 217 (527)
T ss_pred --CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHH
Confidence 34567777788888888888888 87 5677765 67888887887777665544332 245556554 3344555
Q ss_pred HHHHHHHH
Q psy450 412 YSICSNAW 419 (478)
Q Consensus 412 ~~l~~~a~ 419 (478)
.+++..+.
T Consensus 218 l~lldqai 225 (527)
T PRK14969 218 LSLLDQAI 225 (527)
T ss_pred HHHHHHHH
Confidence 55555443
No 145
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.52 E-value=3.6e-13 Score=133.30 Aligned_cols=204 Identities=15% Similarity=0.232 Sum_probs=136.6
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh-----CCcEEEEechhhhhh
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC-----RMNFLAVKGPELLNK 273 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~-----~~~~~~v~~~~l~~~ 273 (478)
...|..+|++++.-............++. .+|...+.++||||+|+|||||+++++++. +..+++++...+...
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~aa~~~va~-~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~ 157 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAYAAAKAVAE-NPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTND 157 (408)
T ss_pred cCCCCCchhheeeCCchHHHHHHHHHHHh-ccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHH
Confidence 45678889998765554444433333332 233345569999999999999999999887 346888888887766
Q ss_pred hhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC---
Q psy450 274 YIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDL--- 350 (478)
Q Consensus 274 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~--- 350 (478)
++......-.+-|+.-. +-.+++|||++.+.++. +....+...+..+...++.+|+.+...|..
T Consensus 158 ~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~-----------~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~ 224 (408)
T COG0593 158 FVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKE-----------RTQEEFFHTFNALLENGKQIVLTSDRPPKELNG 224 (408)
T ss_pred HHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCCh-----------hHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcc
Confidence 65554443334454444 34699999999998653 234445555555455566666666666755
Q ss_pred CCccccCCCCCCeEEEeCC-CCCHHHHHHHHHHHHhcCC--CCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy450 351 LDPAILRPGRLDKSLYVGL-YEDRISQLGVLKAVVRKFK--LSDDVSLDSLVHHFPSQMSGADIYSICSNAWTR 421 (478)
Q Consensus 351 ld~~l~~~~Rf~~~i~~~~-pp~~~~r~~il~~~~~~~~--~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~ 421 (478)
+.+.|++ ||.+.+.+.+ ||+.+.|..|++......+ +++++ ...++.+.+ -+.+++..++......
T Consensus 225 ~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev-~~~la~~~~--~nvReLegaL~~l~~~ 293 (408)
T COG0593 225 LEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEV-LEFLAKRLD--RNVRELEGALNRLDAF 293 (408)
T ss_pred ccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHhh--ccHHHHHHHHHHHHHH
Confidence 4588898 9999887777 7899999999988665544 44443 667777762 3455666555544433
No 146
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.52 E-value=1e-12 Score=123.16 Aligned_cols=204 Identities=14% Similarity=0.155 Sum_probs=124.0
Q ss_pred CCCCccccc--CcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhhhc
Q psy450 202 PNVSWEDIG--GLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKYIG 276 (478)
Q Consensus 202 ~~~~~~~i~--g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~~g 276 (478)
...+++++. +.....+.+++.+. ...+.+++|+||+|||||++|+++++.+ +.+++++++.++....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~-- 81 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD-- 81 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--
Confidence 345666665 35556666666543 2236789999999999999999999876 4688999988775432
Q ss_pred chHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCC---c
Q psy450 277 QSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLD---P 353 (478)
Q Consensus 277 ~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld---~ 353 (478)
..++.... .+.+|+|||+|.+.... .. ...+..++..+. ..+..+|+.++..+..++ +
T Consensus 82 ------~~~~~~~~--~~~lLvIDdi~~l~~~~-------~~-~~~L~~~l~~~~---~~~~~iIits~~~~~~~~~~~~ 142 (226)
T TIGR03420 82 ------PEVLEGLE--QADLVCLDDVEAIAGQP-------EW-QEALFHLYNRVR---EAGGRLLIAGRAAPAQLPLRLP 142 (226)
T ss_pred ------HHHHhhcc--cCCEEEEeChhhhcCCh-------HH-HHHHHHHHHHHH---HcCCeEEEECCCChHHCCcccH
Confidence 22333222 23599999999986421 00 122333333322 222334444443443332 6
Q ss_pred cccCCCCCC--eEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy450 354 AILRPGRLD--KSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSA 430 (478)
Q Consensus 354 ~l~~~~Rf~--~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~ 430 (478)
.+.+ |+. ..+.++. ++.+++..+++.+..+.++.-+ .-+..|+..+ +-+.+++.++++.+...+.+.
T Consensus 143 ~L~~--r~~~~~~i~l~~-l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~--~gn~r~L~~~l~~~~~~~~~~----- 212 (226)
T TIGR03420 143 DLRT--RLAWGLVFQLPP-LSDEEKIAALQSRAARRGLQLPDEVADYLLRHG--SRDMGSLMALLDALDRASLAA----- 212 (226)
T ss_pred HHHH--HHhcCeeEecCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHh-----
Confidence 6776 663 6677775 6789999999887665443322 2266677754 456778888888766433332
Q ss_pred CCCCCCCccccHHHHHhc
Q psy450 431 PQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 431 ~~~~~~~~~it~~d~~~A 448 (478)
...||.+.+.+.
T Consensus 213 ------~~~i~~~~~~~~ 224 (226)
T TIGR03420 213 ------KRKITIPFVKEV 224 (226)
T ss_pred ------CCCCCHHHHHHH
Confidence 235777666654
No 147
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.52 E-value=5.9e-13 Score=133.33 Aligned_cols=235 Identities=20% Similarity=0.321 Sum_probs=147.6
Q ss_pred cccCcHHHHHHHHHHHHhhhhhC------C------CCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh-hh
Q psy450 208 DIGGLSKLKAEILSTFRGVNRTS------G------LKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN-KY 274 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~~~~~------~------~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~-~~ 274 (478)
.++|++++++.+...+.....+. . ....++||+||||||||++|+++|+.++.+|..+++..+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 47999999999987764321111 0 11468999999999999999999999999999999877652 46
Q ss_pred hcch-HHHHHHHHHHh----HhCCCeEEEEcCCccccCCCCCCCCCch-hHHHHHHHHHHhhcCCCC-----------CC
Q psy450 275 IGQS-EENIRNVFLKA----RSAAPCVVFFDELDSLAPRRGQEDQSSG-VMDRVVSQLLAEMDGVHT-----------SQ 337 (478)
Q Consensus 275 ~g~~-~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~-~~~~~~~~ll~~l~~~~~-----------~~ 337 (478)
.|.. +..+...+..+ ....++||||||+|.+.+++.+.+-... ....+.+.|++.+++... ..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 6764 33344444322 2345789999999999875432211100 112567778877765421 23
Q ss_pred CeEEEEEcCCC---------------------------C-----------------------CCCccccCCCCCCeEEEe
Q psy450 338 DVFILGATNRV---------------------------D-----------------------LLDPAILRPGRLDKSLYV 367 (478)
Q Consensus 338 ~v~vI~ttn~~---------------------------~-----------------------~ld~~l~~~~Rf~~~i~~ 367 (478)
+.++|.|+|-. + .+.|+++ ||++..+++
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeec
Confidence 46777777751 0 0224444 499999998
Q ss_pred CCCCCHHHHHHHHHH----HHhc----C---CCCC---CCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy450 368 GLYEDRISQLGVLKA----VVRK----F---KLSD---DVSLDSLVHHF-PSQMSGADIYSICSNAWTRAIRRIITSAPQ 432 (478)
Q Consensus 368 ~~pp~~~~r~~il~~----~~~~----~---~~~~---~~~~~~la~~~-~~~~sg~di~~l~~~a~~~a~~r~~~~~~~ 432 (478)
.. .+.++..+|+.. +++. + ++.- +.-++.++++. ...+-++.|+.+++......+-+.....
T Consensus 316 ~p-L~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~p~~~-- 392 (413)
T TIGR00382 316 EK-LDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDLPSLE-- 392 (413)
T ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhCCCCC--
Confidence 64 799999888854 2221 1 2211 12266677763 3345567888888887777776653311
Q ss_pred CCCCCccccHHHHHhc
Q psy450 433 VKSAPVIVTMDDFLGA 448 (478)
Q Consensus 433 ~~~~~~~it~~d~~~A 448 (478)
......||.+.+...
T Consensus 393 -~~~~v~i~~~~v~~~ 407 (413)
T TIGR00382 393 -DLEKVVITKETVLKQ 407 (413)
T ss_pred -CCcEEEECHHHHcCc
Confidence 112345666665443
No 148
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.51 E-value=4.1e-13 Score=134.75 Aligned_cols=186 Identities=19% Similarity=0.262 Sum_probs=127.8
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc-------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------- 261 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------- 261 (478)
..+.+|++++|++++++.|...+.. +..++.+||+||||+|||++|+++++.+.+.
T Consensus 8 ~rp~~~~~iig~~~~~~~l~~~~~~-----~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~ 82 (355)
T TIGR02397 8 YRPQTFEDVIGQEHIVQTLKNAIKN-----GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINS 82 (355)
T ss_pred hCCCcHhhccCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 4567899999999999999887642 3346779999999999999999999987432
Q ss_pred -----EEEEechhhhhhhhcchHHHHHHHHHHhHh----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC
Q psy450 262 -----FLAVKGPELLNKYIGQSEENIRNVFLKARS----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG 332 (478)
Q Consensus 262 -----~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~ 332 (478)
++.++... ......++.++..+.. ....|++|||+|.+. ....+.++..++.
T Consensus 83 ~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~-------------~~~~~~Ll~~le~ 143 (355)
T TIGR02397 83 GSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS-------------KSAFNALLKTLEE 143 (355)
T ss_pred CCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC-------------HHHHHHHHHHHhC
Confidence 23333221 1133345666665533 234599999999885 2456778888875
Q ss_pred CCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHH
Q psy450 333 VHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADI 411 (478)
Q Consensus 333 ~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di 411 (478)
....+++|.+|+.++.+.+.+++ |+ ..+.++. |+.++...+++..+++.++.-+ ..+..++..+ +.+.+.+
T Consensus 144 --~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~-~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~--~g~~~~a 215 (355)
T TIGR02397 144 --PPEHVVFILATTEPHKIPATILS--RC-QRFDFKR-IPLEDIVERLKKILDKEGIKIEDEALELIARAA--DGSLRDA 215 (355)
T ss_pred --CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCChHHH
Confidence 33467777788888888889998 87 4677774 7888999999888876664322 2255566654 2344444
Q ss_pred HHHHHHH
Q psy450 412 YSICSNA 418 (478)
Q Consensus 412 ~~l~~~a 418 (478)
.+.+..+
T Consensus 216 ~~~lekl 222 (355)
T TIGR02397 216 LSLLDQL 222 (355)
T ss_pred HHHHHHH
Confidence 4444433
No 149
>KOG2028|consensus
Probab=99.51 E-value=3.9e-13 Score=127.43 Aligned_cols=154 Identities=22% Similarity=0.410 Sum_probs=102.6
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc---EEEEechhhhhhhhc
Q psy450 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN---FLAVKGPELLNKYIG 276 (478)
Q Consensus 200 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~---~~~v~~~~l~~~~~g 276 (478)
...+.+++|.+|+++...+ ...+........ -.+++||||||||||++|+.|+.....+ |+.++.. .
T Consensus 131 rmRPktL~dyvGQ~hlv~q-~gllrs~ieq~~--ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt-------~ 200 (554)
T KOG2028|consen 131 RMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQNR--IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT-------N 200 (554)
T ss_pred hcCcchHHHhcchhhhcCc-chHHHHHHHcCC--CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc-------c
Confidence 3456678888888887766 334433332222 3359999999999999999999988666 6666643 2
Q ss_pred chHHHHHHHHHHhHh-----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEc-CCC-C
Q psy450 277 QSEENIRNVFLKARS-----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGAT-NRV-D 349 (478)
Q Consensus 277 ~~~~~~~~~~~~a~~-----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~tt-n~~-~ 349 (478)
.....++++|+.+++ ....||||||++++... -...|+-.. .++.+.+|++| ..| -
T Consensus 201 a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks-------------QQD~fLP~V----E~G~I~lIGATTENPSF 263 (554)
T KOG2028|consen 201 AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS-------------QQDTFLPHV----ENGDITLIGATTENPSF 263 (554)
T ss_pred cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh-------------hhhccccee----ccCceEEEecccCCCcc
Confidence 345568888888854 34579999999998632 123343332 34567777655 444 3
Q ss_pred CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHH
Q psy450 350 LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVV 384 (478)
Q Consensus 350 ~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~ 384 (478)
.++.+|++ |+...+.-++ ....-..||..-.
T Consensus 264 qln~aLlS--RC~VfvLekL--~~n~v~~iL~rai 294 (554)
T KOG2028|consen 264 QLNAALLS--RCRVFVLEKL--PVNAVVTILMRAI 294 (554)
T ss_pred chhHHHHh--ccceeEeccC--CHHHHHHHHHHHH
Confidence 58899999 8855555544 4566667776533
No 150
>PRK06620 hypothetical protein; Validated
Probab=99.51 E-value=9.7e-13 Score=121.60 Aligned_cols=200 Identities=14% Similarity=0.124 Sum_probs=119.1
Q ss_pred CCCCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCC--ceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhh
Q psy450 197 DAPSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKR--SGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKY 274 (478)
Q Consensus 197 ~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~--~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~ 274 (478)
..+..|..++++++.-+.....+.....+.. ..+..| +.++|||||||||||+++++++..+..++ .....
T Consensus 6 ~~~~~~~~tfd~Fvvg~~N~~a~~~~~~~~~-~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~~~---- 78 (214)
T PRK06620 6 RFTTSSKYHPDEFIVSSSNDQAYNIIKNWQC-GFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDIFF---- 78 (214)
T ss_pred CCCCCCCCCchhhEecccHHHHHHHHHHHHH-ccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEc--chhhh----
Confidence 3456678889987665544433333333332 112223 67999999999999999999988765332 21110
Q ss_pred hcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC--CC
Q psy450 275 IGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDL--LD 352 (478)
Q Consensus 275 ~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~--ld 352 (478)
. ...+ ....+++|||+|.+. ...+..+++.+ ...++.++++++..|.. +
T Consensus 79 ---~----~~~~-----~~~d~lliDdi~~~~-------------~~~lf~l~N~~---~e~g~~ilits~~~p~~l~l- 129 (214)
T PRK06620 79 ---N----EEIL-----EKYNAFIIEDIENWQ-------------EPALLHIFNII---NEKQKYLLLTSSDKSRNFTL- 129 (214)
T ss_pred ---c----hhHH-----hcCCEEEEeccccch-------------HHHHHHHHHHH---HhcCCEEEEEcCCCccccch-
Confidence 0 0111 123599999999542 12233333333 34556777777776654 5
Q ss_pred ccccCCCCCCeEEEeCC-CCCHHHHHHHHHHHHhcCC--CCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy450 353 PAILRPGRLDKSLYVGL-YEDRISQLGVLKAVVRKFK--LSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITS 429 (478)
Q Consensus 353 ~~l~~~~Rf~~~i~~~~-pp~~~~r~~il~~~~~~~~--~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~ 429 (478)
+.+++ |+...+.+.+ ||+.+.+..+++..+...+ ++.++ ++.|+.++ .-+.+.+..++......+..
T Consensus 130 ~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev-~~~L~~~~--~~d~r~l~~~l~~l~~~~~~----- 199 (214)
T PRK06620 130 PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQI-IDFLLVNL--PREYSKIIEILENINYFALI----- 199 (214)
T ss_pred HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHc--cCCHHHHHHHHHHHHHHHHH-----
Confidence 78888 9876544444 4788999999987776443 44443 77788776 33455566655553221111
Q ss_pred CCCCCCCCccccHHHHHhc
Q psy450 430 APQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 430 ~~~~~~~~~~it~~d~~~A 448 (478)
....||...++++
T Consensus 200 ------~~~~it~~~~~~~ 212 (214)
T PRK06620 200 ------SKRKITISLVKEV 212 (214)
T ss_pred ------cCCCCCHHHHHHH
Confidence 1335888887776
No 151
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=5.6e-13 Score=140.82 Aligned_cols=191 Identities=19% Similarity=0.249 Sum_probs=129.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEE---Eechhhhh---h-
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLA---VKGPELLN---K- 273 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~---v~~~~l~~---~- 273 (478)
+.+.+|++++|++.+++.|...+.. +..++.+||+||+|+|||++|+++|+.+.+.-.. -.|..... .
T Consensus 12 yRP~~f~dIiGQe~~v~~L~~aI~~-----~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~ 86 (725)
T PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIKS-----NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNS 86 (725)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCC
Confidence 4567899999999999998887753 2336778999999999999999999988653110 01111100 0
Q ss_pred --------hhcchHHHHHHHHHHhHh----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEE
Q psy450 274 --------YIGQSEENIRNVFLKARS----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFI 341 (478)
Q Consensus 274 --------~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~v 341 (478)
........++.+.+.+.. +...|++|||+|.+. ....+.|+..++. +...+++
T Consensus 87 ~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT-------------~~A~NALLKtLEE--PP~~tif 151 (725)
T PRK07133 87 LDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS-------------KSAFNALLKTLEE--PPKHVIF 151 (725)
T ss_pred CcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC-------------HHHHHHHHHHhhc--CCCceEE
Confidence 001224456777666543 345799999999986 2467889999985 3456778
Q ss_pred EEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCC-HHHHHHhcCCCCCHHHHHHHHHH
Q psy450 342 LGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVS-LDSLVHHFPSQMSGADIYSICSN 417 (478)
Q Consensus 342 I~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~~~~sg~di~~l~~~ 417 (478)
|.+|+.++.+.+.+++ |+. .+.|.. ++.++...+++..+.+.++..+.+ +..++..+ +-+.+++..++..
T Consensus 152 ILaTte~~KLl~TI~S--Rcq-~ieF~~-L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS--~GslR~AlslLek 222 (725)
T PRK07133 152 ILATTEVHKIPLTILS--RVQ-RFNFRR-ISEDEIVSRLEFILEKENISYEKNALKLIAKLS--SGSLRDALSIAEQ 222 (725)
T ss_pred EEEcCChhhhhHHHHh--hce-eEEccC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence 8888889999999999 985 677775 678888888887776655443322 55566554 2233444444443
No 152
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=5.1e-13 Score=138.48 Aligned_cols=185 Identities=19% Similarity=0.234 Sum_probs=124.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCC--------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRM-------------------- 260 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~-------------------- 260 (478)
+.+.+|++++|++.+++.|...+.. +..++++||+||+|+|||++|+++|+.+.+
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~~-----~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~ 84 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAILN-----NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINT 84 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHc
Confidence 4466899999999999988876542 333677999999999999999999998753
Q ss_pred ----cEEEEechhhhhhhhcchHHHHHHHHHHhHh----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC
Q psy450 261 ----NFLAVKGPELLNKYIGQSEENIRNVFLKARS----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG 332 (478)
Q Consensus 261 ----~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~ 332 (478)
.++.++++. ......++.+...+.. ....|++|||+|.+. ....+.|+..++.
T Consensus 85 ~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-------------~~A~NaLLKtLEE 145 (605)
T PRK05896 85 NQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-------------TSAWNALLKTLEE 145 (605)
T ss_pred CCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-------------HHHHHHHHHHHHh
Confidence 122222211 1123345555554432 234699999999986 2356788888885
Q ss_pred CCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHH
Q psy450 333 VHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADI 411 (478)
Q Consensus 333 ~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di 411 (478)
+...+++|.+|+.++.+.+.+++ |+. .+.+.. ++.++...+++..+.+.++.-+ ..+..++..+ +| +.++.
T Consensus 146 --Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~-Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS-~G-dlR~A 217 (605)
T PRK05896 146 --PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKK-LNNSELQELLKSIAKKEKIKIEDNAIDKIADLA-DG-SLRDG 217 (605)
T ss_pred --CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CC-cHHHH
Confidence 34567788888889999999998 885 677765 6788888888887766543222 2255555554 32 34444
Q ss_pred HHHHHH
Q psy450 412 YSICSN 417 (478)
Q Consensus 412 ~~l~~~ 417 (478)
.+.+..
T Consensus 218 lnlLek 223 (605)
T PRK05896 218 LSILDQ 223 (605)
T ss_pred HHHHHH
Confidence 444443
No 153
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.50 E-value=2.3e-12 Score=120.93 Aligned_cols=204 Identities=15% Similarity=0.157 Sum_probs=123.4
Q ss_pred CCCCCCCCCcccccC--cHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhh
Q psy450 197 DAPSVPNVSWEDIGG--LSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELL 271 (478)
Q Consensus 197 ~~~~~~~~~~~~i~g--~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~ 271 (478)
..+..++.+|+++.+ .......+.....+ .....+++|+||+|||||++|+++++.. +.+++++++.++.
T Consensus 8 ~~~~~~~~~~d~f~~~~~~~~~~~l~~~~~~-----~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 8 DLGPPPPPTFDNFVAGENAELVARLRELAAG-----PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred CCCCCChhhhcccccCCcHHHHHHHHHHHhc-----cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 345566778888763 34455555444331 1225679999999999999999999876 6688888887653
Q ss_pred hhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC--
Q psy450 272 NKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD-- 349 (478)
Q Consensus 272 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~-- 349 (478)
.. +.. .....+|+|||+|.+.+.. ...+..++... ......++|.+++.+.
T Consensus 83 ~~------------~~~--~~~~~~liiDdi~~l~~~~----------~~~L~~~~~~~---~~~~~~~vl~~~~~~~~~ 135 (227)
T PRK08903 83 LA------------FDF--DPEAELYAVDDVERLDDAQ----------QIALFNLFNRV---RAHGQGALLVAGPAAPLA 135 (227)
T ss_pred HH------------Hhh--cccCCEEEEeChhhcCchH----------HHHHHHHHHHH---HHcCCcEEEEeCCCCHHh
Confidence 21 111 1234699999999875311 22233333332 2334433444544331
Q ss_pred -CCCccccCCCCC--CeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Q psy450 350 -LLDPAILRPGRL--DKSLYVGLYEDRISQLGVLKAVVRKFKLSDDV-SLDSLVHHFPSQMSGADIYSICSNAWTRAIRR 425 (478)
Q Consensus 350 -~ld~~l~~~~Rf--~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r 425 (478)
.+.+.+.+ || ...+.++. ++.+++..+++......++.-+. -++.|+..+ .-+.+++..+++.-...+...
T Consensus 136 ~~l~~~L~s--r~~~~~~i~l~p-l~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~--~gn~~~l~~~l~~l~~~~~~~ 210 (227)
T PRK08903 136 LPLREDLRT--RLGWGLVYELKP-LSDADKIAALKAAAAERGLQLADEVPDYLLTHF--RRDMPSLMALLDALDRYSLEQ 210 (227)
T ss_pred CCCCHHHHH--HHhcCeEEEecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHh
Confidence 34566776 77 46778875 67777888887766554443222 266677755 235567777776643323222
Q ss_pred HHhcCCCCCCCCccccHHHHHhc
Q psy450 426 IITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 426 ~~~~~~~~~~~~~~it~~d~~~A 448 (478)
...||...++++
T Consensus 211 -----------~~~i~~~~~~~~ 222 (227)
T PRK08903 211 -----------KRPVTLPLLREM 222 (227)
T ss_pred -----------CCCCCHHHHHHH
Confidence 346888888887
No 154
>PRK08727 hypothetical protein; Validated
Probab=99.50 E-value=1.9e-12 Score=121.70 Aligned_cols=206 Identities=17% Similarity=0.191 Sum_probs=119.3
Q ss_pred CCCCCCCCcccccCcHH-HHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh
Q psy450 198 APSVPNVSWEDIGGLSK-LKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK 273 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~-~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~ 273 (478)
....+..+|+++++... ....+.... . +.....++|+||+|||||++++++++.+ +..+.+++..++..
T Consensus 10 ~~~~~~~~f~~f~~~~~n~~~~~~~~~----~--~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~- 82 (233)
T PRK08727 10 LRYPSDQRFDSYIAAPDGLLAQLQALA----A--GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG- 82 (233)
T ss_pred CCCCCcCChhhccCCcHHHHHHHHHHH----h--ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh-
Confidence 44456778888765443 222222211 1 2224559999999999999999997765 56677777655332
Q ss_pred hhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcC-CCCC--
Q psy450 274 YIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATN-RVDL-- 350 (478)
Q Consensus 274 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn-~~~~-- 350 (478)
.+...++... +..+|+|||++.+..+.. ....+..++.... ..+ ..||.|+| .|..
T Consensus 83 -------~~~~~~~~l~--~~dlLiIDDi~~l~~~~~--------~~~~lf~l~n~~~---~~~-~~vI~ts~~~p~~l~ 141 (233)
T PRK08727 83 -------RLRDALEALE--GRSLVALDGLESIAGQRE--------DEVALFDFHNRAR---AAG-ITLLYTARQMPDGLA 141 (233)
T ss_pred -------hHHHHHHHHh--cCCEEEEeCcccccCChH--------HHHHHHHHHHHHH---HcC-CeEEEECCCChhhhh
Confidence 2233444443 336999999998874321 1122333443332 222 33555555 5544
Q ss_pred -CCccccCCCCCCe--EEEeCCCCCHHHHHHHHHHHHhc--CCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Q psy450 351 -LDPAILRPGRLDK--SLYVGLYEDRISQLGVLKAVVRK--FKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRR 425 (478)
Q Consensus 351 -ld~~l~~~~Rf~~--~i~~~~pp~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r 425 (478)
+++.+++ ||.. .+.++ ||+.+++..|++.+... +.++.++ ++.|+.++. -..+.+.+++......+...
T Consensus 142 ~~~~dL~S--Rl~~~~~~~l~-~~~~e~~~~iL~~~a~~~~l~l~~e~-~~~La~~~~--rd~r~~l~~L~~l~~~~~~~ 215 (233)
T PRK08727 142 LVLPDLRS--RLAQCIRIGLP-VLDDVARAAVLRERAQRRGLALDEAA-IDWLLTHGE--RELAGLVALLDRLDRESLAA 215 (233)
T ss_pred hhhHHHHH--HHhcCceEEec-CCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhCC--CCHHHHHHHHHHHHHHHHHh
Confidence 4789998 8754 45555 47999999999976654 3444333 777777762 12223333344333222221
Q ss_pred HHhcCCCCCCCCccccHHHHHhc
Q psy450 426 IITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 426 ~~~~~~~~~~~~~~it~~d~~~A 448 (478)
...||.+.+++.
T Consensus 216 -----------~~~it~~~~~~~ 227 (233)
T PRK08727 216 -----------KRRVTVPFLRRV 227 (233)
T ss_pred -----------CCCCCHHHHHHH
Confidence 235888888877
No 155
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=7.7e-13 Score=139.56 Aligned_cols=172 Identities=16% Similarity=0.218 Sum_probs=122.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc-------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------- 261 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------- 261 (478)
+.+.+|++++|++++++.|...+.. +..++.+||+||+|+|||++|+++++.+.+.
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~-----~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~ 84 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDT-----GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITE 84 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhc
Confidence 4457899999999999999887653 3337778999999999999999999998642
Q ss_pred -----EEEEechhhhhhhhcchHHHHHHHHHHhHh----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC
Q psy450 262 -----FLAVKGPELLNKYIGQSEENIRNVFLKARS----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG 332 (478)
Q Consensus 262 -----~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~ 332 (478)
++.+++.. ......++++...+.. ....|++|||+|.+. ....+.|++.++.
T Consensus 85 g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt-------------~~a~naLLk~LEe 145 (576)
T PRK14965 85 GRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS-------------TNAFNALLKTLEE 145 (576)
T ss_pred CCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC-------------HHHHHHHHHHHHc
Confidence 23333211 1223445666655432 234699999999986 3467889999985
Q ss_pred CCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhc
Q psy450 333 VHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHF 402 (478)
Q Consensus 333 ~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~ 402 (478)
....+++|.+|+.++.+.+.+++ |+. .+.|.. ++.++....++..+++.++.-+ ..+..++...
T Consensus 146 --pp~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~-l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a 210 (576)
T PRK14965 146 --PPPHVKFIFATTEPHKVPITILS--RCQ-RFDFRR-IPLQKIVDRLRYIADQEGISISDAALALVARKG 210 (576)
T ss_pred --CCCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCC-CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 34567888888899999999998 874 666764 5777777788777766554322 2255555554
No 156
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1.6e-12 Score=136.10 Aligned_cols=185 Identities=18% Similarity=0.232 Sum_probs=126.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc-------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------- 261 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------- 261 (478)
+.+.+|++++|++.+++.|...+.. +..++.+||+||+|+|||++|+++|+.+.+.
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~-----~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~ 84 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIES-----NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDN 84 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHc
Confidence 4456899999999999998887753 3336779999999999999999999988642
Q ss_pred -----EEEEechhhhhhhhcchHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC
Q psy450 262 -----FLAVKGPELLNKYIGQSEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG 332 (478)
Q Consensus 262 -----~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~ 332 (478)
++.+++.. ......++++.+.+. .....|++|||+|.+. ....+.|++.++.
T Consensus 85 ~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls-------------~~a~naLLK~LEe 145 (563)
T PRK06647 85 DNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS-------------NSAFNALLKTIEE 145 (563)
T ss_pred CCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC-------------HHHHHHHHHhhcc
Confidence 22222110 012334555543332 3445799999999986 3467888988884
Q ss_pred CCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHH
Q psy450 333 VHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADI 411 (478)
Q Consensus 333 ~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di 411 (478)
....+++|++|+.+..+.+++++ |+. .+.|.. ++.++...+++..++..++.-+ ..+..++... +| +.+++
T Consensus 146 --pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~-l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s-~G-dlR~a 217 (563)
T PRK06647 146 --PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRL-LSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKS-TG-SVRDA 217 (563)
T ss_pred --CCCCEEEEEecCChHHhHHHHHH--hce-EEEecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CC-CHHHH
Confidence 44567788888888899999998 885 567775 5778888888877765554422 2255566654 33 44455
Q ss_pred HHHHHH
Q psy450 412 YSICSN 417 (478)
Q Consensus 412 ~~l~~~ 417 (478)
.+++..
T Consensus 218 lslLdk 223 (563)
T PRK06647 218 YTLFDQ 223 (563)
T ss_pred HHHHHH
Confidence 554443
No 157
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.1e-12 Score=132.88 Aligned_cols=213 Identities=17% Similarity=0.160 Sum_probs=130.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEE----------Eechh-
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLA----------VKGPE- 269 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~----------v~~~~- 269 (478)
+.+.+|++++|++.+++.|...+.. +..++++||+||||+|||++|+++|+.+.+.-.. -.|..
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~~-----~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c 84 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLRM-----GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGEC 84 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHHh-----CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCC
Confidence 4567899999999999988876652 3336779999999999999999999998663100 00100
Q ss_pred -----hhh-------hhhc---chHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhh
Q psy450 270 -----LLN-------KYIG---QSEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEM 330 (478)
Q Consensus 270 -----l~~-------~~~g---~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l 330 (478)
+.. .+.+ .....++++.+.+. .....|++|||+|.+. ....+.|++.+
T Consensus 85 ~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~-------------~~~~~~LLk~L 151 (397)
T PRK14955 85 ESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS-------------IAAFNAFLKTL 151 (397)
T ss_pred HHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC-------------HHHHHHHHHHH
Confidence 000 0011 11344555554442 2234699999999986 23456788888
Q ss_pred cCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHH
Q psy450 331 DGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGA 409 (478)
Q Consensus 331 ~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~ 409 (478)
+. .....++|.+|+.+..+.+.+++ |+. .+.+.. ++.++...+++..++..++.-+ ..+..++..+ |-+.+
T Consensus 152 Ee--p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~-l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s--~g~lr 223 (397)
T PRK14955 152 EE--PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKR-IPLEEIQQQLQGICEAEGISVDADALQLIGRKA--QGSMR 223 (397)
T ss_pred hc--CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHH
Confidence 74 33455666666777888888887 774 566764 6777877788877765543222 2255666654 22333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 410 DIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 410 di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
.+.+.+..+...+-. ......||.+++.+.
T Consensus 224 ~a~~~L~kl~~~~~~---------~~~~~~It~~~v~~~ 253 (397)
T PRK14955 224 DAQSILDQVIAFSVE---------SEGEGSIRYDKVAEL 253 (397)
T ss_pred HHHHHHHHHHHhccc---------cCCCCccCHHHHHHH
Confidence 444444433322100 012335777777665
No 158
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.6e-12 Score=133.95 Aligned_cols=192 Identities=18% Similarity=0.170 Sum_probs=124.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc-------EE-EEechhhhh
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN-------FL-AVKGPELLN 272 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~-------~~-~v~~~~l~~ 272 (478)
+.+.+|++++|++.+++.|...+.. +..++.+||+||+|+|||++|+.+|+.+++. .- ..+|..+..
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~-----~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~ 84 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKL-----QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDK 84 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhc
Confidence 4566899999999999988877643 2235668999999999999999999988641 00 001111100
Q ss_pred ----------hhhcchHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCC
Q psy450 273 ----------KYIGQSEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQD 338 (478)
Q Consensus 273 ----------~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 338 (478)
.........++.+.+.+. ...+.|++|||+|.+. ....+.|+..++.. ...
T Consensus 85 g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt-------------~~a~naLLk~LEep--p~~ 149 (486)
T PRK14953 85 GSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT-------------KEAFNALLKTLEEP--PPR 149 (486)
T ss_pred CCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC-------------HHHHHHHHHHHhcC--CCC
Confidence 000112233455544443 2345799999999886 34567888888753 345
Q ss_pred eEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCC-HHHHHHhcCCCCCHHHHHHHHHH
Q psy450 339 VFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVS-LDSLVHHFPSQMSGADIYSICSN 417 (478)
Q Consensus 339 v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~~~~sg~di~~l~~~ 417 (478)
+++|.+|+.++.+.+++++ |+. .+.+.. ++.++...+++.+++..++..+.+ +..++..+ + -+.+++.+.+..
T Consensus 150 ~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~-ls~~el~~~L~~i~k~egi~id~~al~~La~~s-~-G~lr~al~~Ldk 223 (486)
T PRK14953 150 TIFILCTTEYDKIPPTILS--RCQ-RFIFSK-PTKEQIKEYLKRICNEEKIEYEEKALDLLAQAS-E-GGMRDAASLLDQ 223 (486)
T ss_pred eEEEEEECCHHHHHHHHHH--hce-EEEcCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-C-CCHHHHHHHHHH
Confidence 5666667778888889988 875 677764 788888899998887766543322 45555554 2 233444444444
Q ss_pred H
Q psy450 418 A 418 (478)
Q Consensus 418 a 418 (478)
+
T Consensus 224 l 224 (486)
T PRK14953 224 A 224 (486)
T ss_pred H
Confidence 3
No 159
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.46 E-value=2.3e-12 Score=123.27 Aligned_cols=133 Identities=23% Similarity=0.354 Sum_probs=90.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEech------hhhhhhhcchHHHH-HH-------------------HHH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGP------ELLNKYIGQSEENI-RN-------------------VFL 287 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~------~l~~~~~g~~~~~~-~~-------------------~~~ 287 (478)
..+++|+||||||||++|+++|+.+|.+++.+++. ++.+.+.+.....+ .. .+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 45699999999999999999999999999999764 33333322211111 11 111
Q ss_pred HhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC--------------CCCCeEEEEEcCCCC----
Q psy450 288 KARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH--------------TSQDVFILGATNRVD---- 349 (478)
Q Consensus 288 ~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------------~~~~v~vI~ttn~~~---- 349 (478)
.|.. .+.+++|||++.+.+ .+.+.|+..++.-. ..+++.||+|+|...
T Consensus 101 ~A~~-~g~~lllDEi~r~~~-------------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRSKP-------------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHH-cCCEEEEcchhhCCH-------------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 2222 235999999999763 34555555554211 123678999999762
Q ss_pred -CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHH
Q psy450 350 -LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVV 384 (478)
Q Consensus 350 -~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~ 384 (478)
.+++++++ || ..++++. |+.++..+|++..+
T Consensus 167 ~~l~~aL~~--R~-~~i~i~~-P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLD--RL-ITIFMDY-PDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHh--hc-EEEECCC-CCHHHHHHHHHHhh
Confidence 46888998 98 6788887 68888888988764
No 160
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=2.7e-12 Score=132.35 Aligned_cols=187 Identities=18% Similarity=0.202 Sum_probs=128.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCC--------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRM-------------------- 260 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~-------------------- 260 (478)
+.+.+|++++|++.+++.|...+.. +..++.+||+||+|+|||++|+++++.+.+
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~~-----grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~ 82 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALDN-----NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALE 82 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHc-----CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhh
Confidence 4457899999999999999887642 333677899999999999999999998732
Q ss_pred ----cEEEEechhhhhhhhcchHHHHHHHHHHhHh----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC
Q psy450 261 ----NFLAVKGPELLNKYIGQSEENIRNVFLKARS----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG 332 (478)
Q Consensus 261 ----~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~ 332 (478)
.++.++.+. ...-..++++...... ....|++|||+|.+. ....+.|++.++.
T Consensus 83 ~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt-------------~~A~NALLK~LEE 143 (535)
T PRK08451 83 NRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT-------------KEAFNALLKTLEE 143 (535)
T ss_pred cCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-------------HHHHHHHHHHHhh
Confidence 122222211 0123456666554321 234699999999996 3567889999986
Q ss_pred CCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHH
Q psy450 333 VHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADI 411 (478)
Q Consensus 333 ~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di 411 (478)
. ...+.+|.+|+.+..+.+++++ |+ ..+.|.. ++.++....++..++..++.-+ ..+..++... +-+.+++
T Consensus 144 p--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~-Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s--~GdlR~a 215 (535)
T PRK08451 144 P--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQ-IPQNSIISHLKTILEKEGVSYEPEALEILARSG--NGSLRDT 215 (535)
T ss_pred c--CCceEEEEEECChhhCchHHHh--hc-eeEEcCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHH
Confidence 4 4456677777888999999999 86 5777775 6788888888877776554432 2255566554 3355555
Q ss_pred HHHHHHHH
Q psy450 412 YSICSNAW 419 (478)
Q Consensus 412 ~~l~~~a~ 419 (478)
.+++..+.
T Consensus 216 lnlLdqai 223 (535)
T PRK08451 216 LTLLDQAI 223 (535)
T ss_pred HHHHHHHH
Confidence 55555544
No 161
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=2.8e-12 Score=129.14 Aligned_cols=174 Identities=19% Similarity=0.231 Sum_probs=118.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcE----------EEEechhh
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNF----------LAVKGPEL 270 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~----------~~v~~~~l 270 (478)
+.+.+|++++|++.+++.+...+.. +..++++|||||||+|||++|+++++.+..+. ..+...
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~-----~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~-- 83 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIEN-----NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD-- 83 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec--
Confidence 4567899999999999888877653 33367899999999999999999999885421 111110
Q ss_pred hhhhhcchHHHHHHHHHHhHh----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcC
Q psy450 271 LNKYIGQSEENIRNVFLKARS----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATN 346 (478)
Q Consensus 271 ~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn 346 (478)
.........++.++..+.. ..+.|++|||+|.+.. ..++.++..++. .....++|.+++
T Consensus 84 --~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-------------~~~~~ll~~le~--~~~~~~~Il~~~ 146 (367)
T PRK14970 84 --AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-------------AAFNAFLKTLEE--PPAHAIFILATT 146 (367)
T ss_pred --cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-------------HHHHHHHHHHhC--CCCceEEEEEeC
Confidence 0011223456666665532 3356999999998862 346777777765 233456666777
Q ss_pred CCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHhc
Q psy450 347 RVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLS-DDVSLDSLVHHF 402 (478)
Q Consensus 347 ~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~ 402 (478)
.+..+.+++.+ |+. .+.++. ++.++...++...+++.++. ++..+..++..+
T Consensus 147 ~~~kl~~~l~s--r~~-~v~~~~-~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~ 199 (367)
T PRK14970 147 EKHKIIPTILS--RCQ-IFDFKR-ITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKA 199 (367)
T ss_pred CcccCCHHHHh--cce-eEecCC-ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhC
Confidence 78888889988 774 567765 67888888888777665543 223366666654
No 162
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=3.3e-12 Score=134.34 Aligned_cols=192 Identities=18% Similarity=0.188 Sum_probs=130.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEe-------c------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVK-------G------ 267 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~-------~------ 267 (478)
+.+.+|++++|++.+++.|...+. .+..++++||+||+|+|||++|+++|+.+.+.....+ |
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~-----~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C 92 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFE-----TGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHC 92 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----cCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHH
Confidence 445789999999999999988765 2344778999999999999999999999865421111 0
Q ss_pred hhhhhh----------hhcchHHHHHHHHHHhHh----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCC
Q psy450 268 PELLNK----------YIGQSEENIRNVFLKARS----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGV 333 (478)
Q Consensus 268 ~~l~~~----------~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 333 (478)
..+... ........++.+++.+.. ....|++|||+|.+. ....+.|++.++..
T Consensus 93 ~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls-------------~~a~naLLKtLEeP 159 (598)
T PRK09111 93 QAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS-------------TAAFNALLKTLEEP 159 (598)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-------------HHHHHHHHHHHHhC
Confidence 000000 001123456666665542 235799999999996 34578889888853
Q ss_pred CCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHHH
Q psy450 334 HTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADIY 412 (478)
Q Consensus 334 ~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di~ 412 (478)
...+++|.+|+.++.+.+.+++ |+ ..+.|.. ++.++...+++..+++.++.-+ ..+..++..+ +-+.+++.
T Consensus 160 --p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~-l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a--~Gdlr~al 231 (598)
T PRK09111 160 --PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRR-IEADVLAAHLSRIAAKEGVEVEDEALALIARAA--EGSVRDGL 231 (598)
T ss_pred --CCCeEEEEEeCChhhhhHHHHh--he-eEEEecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHH
Confidence 4456777777888888888998 88 4677875 6788888888888776655433 2245556554 33455555
Q ss_pred HHHHHH
Q psy450 413 SICSNA 418 (478)
Q Consensus 413 ~l~~~a 418 (478)
+.+..+
T Consensus 232 ~~Ldkl 237 (598)
T PRK09111 232 SLLDQA 237 (598)
T ss_pred HHHHHH
Confidence 555443
No 163
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=3.1e-12 Score=131.11 Aligned_cols=172 Identities=19% Similarity=0.235 Sum_probs=119.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc-------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------- 261 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------- 261 (478)
+.+.+|++++|++.+++.|...+.. +..++.+||+||+|+|||++|+++|+.+.+.
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~~-----~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~ 85 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRF-----NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEIS 85 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHh
Confidence 3457899999999999988877653 3336779999999999999999999987542
Q ss_pred ------EEEEechhhhhhhhcchHHHHHHHHHHh----HhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhc
Q psy450 262 ------FLAVKGPELLNKYIGQSEENIRNVFLKA----RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMD 331 (478)
Q Consensus 262 ------~~~v~~~~l~~~~~g~~~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~ 331 (478)
++.+++... ..-..++.+.+.. ....+.|++|||+|.+. ....+.|++.++
T Consensus 86 ~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt-------------~~~~n~LLk~lE 146 (451)
T PRK06305 86 SGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT-------------KEAFNSLLKTLE 146 (451)
T ss_pred cCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC-------------HHHHHHHHHHhh
Confidence 223322110 0112333333222 22456799999999986 235678888888
Q ss_pred CCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhc
Q psy450 332 GVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHF 402 (478)
Q Consensus 332 ~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~ 402 (478)
.. ...+++|++|+.+..+.+.+++ |+. .+.+.. ++.++...+++..+++.++.-+ ..+..++..+
T Consensus 147 ep--~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~-l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s 212 (451)
T PRK06305 147 EP--PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKR-IPEETIIDKLALIAKQEGIETSREALLPIARAA 212 (451)
T ss_pred cC--CCCceEEEEeCChHhcchHHHH--hce-EEeCCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 63 3467777788888899999998 884 677775 6788888888887766554322 2255666654
No 164
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.44 E-value=2.1e-12 Score=138.43 Aligned_cols=203 Identities=18% Similarity=0.265 Sum_probs=125.2
Q ss_pred CCCCCcccccCcHHHHHH---HHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcc
Q psy450 201 VPNVSWEDIGGLSKLKAE---ILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQ 277 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~---l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~ 277 (478)
+.+.++++++|++.+... +...+.. ....+++|+||||||||++|+++++..+.+++.+++...
T Consensus 22 ~RP~tldd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~------- 88 (725)
T PRK13341 22 LRPRTLEEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA------- 88 (725)
T ss_pred cCCCcHHHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-------
Confidence 345789999999998853 4443321 124579999999999999999999999999988886421
Q ss_pred hHHHHHHHHHHhH-----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCC-C-CC
Q psy450 278 SEENIRNVFLKAR-----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNR-V-DL 350 (478)
Q Consensus 278 ~~~~~~~~~~~a~-----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~-~-~~ 350 (478)
....++..+..+. .....+|||||+|.+.. ...+.|+..++ ...+++|++|+. | ..
T Consensus 89 ~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~-------------~qQdaLL~~lE----~g~IiLI~aTTenp~~~ 151 (725)
T PRK13341 89 GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK-------------AQQDALLPWVE----NGTITLIGATTENPYFE 151 (725)
T ss_pred hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH-------------HHHHHHHHHhc----CceEEEEEecCCChHhh
Confidence 1112233333321 13457999999999862 23445555554 245667765543 3 45
Q ss_pred CCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhc---------CCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy450 351 LDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRK---------FKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTR 421 (478)
Q Consensus 351 ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~---------~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~ 421 (478)
+++++++ |+ ..+.++. ++.+++..+++..+.. +.++++ .+..|+... .| +.+.+.++++.++..
T Consensus 152 l~~aL~S--R~-~v~~l~p-Ls~edi~~IL~~~l~~~~~~~g~~~v~I~de-aL~~La~~s-~G-D~R~lln~Le~a~~~ 224 (725)
T PRK13341 152 VNKALVS--RS-RLFRLKS-LSDEDLHQLLKRALQDKERGYGDRKVDLEPE-AEKHLVDVA-NG-DARSLLNALELAVES 224 (725)
T ss_pred hhhHhhc--cc-cceecCC-CCHHHHHHHHHHHHHHHHhhcCCcccCCCHH-HHHHHHHhC-CC-CHHHHHHHHHHHHHh
Confidence 7889998 75 4567764 7889999999887762 122222 256666654 22 334444555544421
Q ss_pred HHHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 422 AIRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 422 a~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
+.. .......||.+++.++
T Consensus 225 ~~~--------~~~~~i~It~~~~~e~ 243 (725)
T PRK13341 225 TPP--------DEDGLIDITLAIAEES 243 (725)
T ss_pred ccc--------CCCCceeccHHHHHHH
Confidence 100 0111234777777777
No 165
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.44 E-value=1.1e-12 Score=133.42 Aligned_cols=193 Identities=19% Similarity=0.204 Sum_probs=135.8
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcE--EEEechhh------h-
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNF--LAVKGPEL------L- 271 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~--~~v~~~~l------~- 271 (478)
+.+..|++++|++.+...|...+..-. -..++||.||.|||||++||.+|+.+++.- ..-.|.+. .
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINE 84 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhc
Confidence 345679999999999999998876432 266799999999999999999999987642 11111111 0
Q ss_pred ---------hhhhcchHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCC
Q psy450 272 ---------NKYIGQSEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQD 338 (478)
Q Consensus 272 ---------~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 338 (478)
.......-..+|.+.+.+. ..++.|.+|||+|.|. ...++.||+.++. +...
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-------------~~afNALLKTLEE--PP~h 149 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-------------KQAFNALLKTLEE--PPSH 149 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-------------HHHHHHHhccccc--CccC
Confidence 0112334455667766653 3456799999999997 4678999999984 5668
Q ss_pred eEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCC-HHHHHHhcCCCCCHHHHHHHHHH
Q psy450 339 VFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVS-LDSLVHHFPSQMSGADIYSICSN 417 (478)
Q Consensus 339 v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~~~~sg~di~~l~~~ 417 (478)
|++|.+|..|+.+++.+++ |+.+ +.+.. -+.++....+...+.+.++..+.+ +.-+++.. +| +.+|...++..
T Consensus 150 V~FIlATTe~~Kip~TIlS--Rcq~-f~fkr-i~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a-~G-s~RDalslLDq 223 (515)
T COG2812 150 VKFILATTEPQKIPNTILS--RCQR-FDFKR-LDLEEIAKHLAAILDKEGINIEEDALSLIARAA-EG-SLRDALSLLDQ 223 (515)
T ss_pred eEEEEecCCcCcCchhhhh--cccc-ccccC-CCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHc-CC-ChhhHHHHHHH
Confidence 9999999999999999999 8854 44443 466777788888888777765544 33344432 33 44566665555
Q ss_pred HH
Q psy450 418 AW 419 (478)
Q Consensus 418 a~ 419 (478)
|.
T Consensus 224 ~i 225 (515)
T COG2812 224 AI 225 (515)
T ss_pred HH
Confidence 54
No 166
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=5.3e-12 Score=132.93 Aligned_cols=178 Identities=16% Similarity=0.178 Sum_probs=118.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEE----------Eechh-
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLA----------VKGPE- 269 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~----------v~~~~- 269 (478)
+.+.+|++++|++.+++.|+..+.. +.-++++||+||+|||||++|+.+|+.+.+.-.. -.|..
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~~-----~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C 84 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLRM-----DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC 84 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-----CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC
Confidence 4456799999999999998876542 3337779999999999999999999999763100 00100
Q ss_pred -----hhh-------hhhc---chHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhh
Q psy450 270 -----LLN-------KYIG---QSEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEM 330 (478)
Q Consensus 270 -----l~~-------~~~g---~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l 330 (478)
+.. .+.+ .....++.+.+.+. .....|++|||+|.+. ....+.|++.+
T Consensus 85 ~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt-------------~~a~naLLK~L 151 (620)
T PRK14954 85 ESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS-------------TAAFNAFLKTL 151 (620)
T ss_pred HHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC-------------HHHHHHHHHHH
Confidence 000 0011 12345555554442 2344699999999986 24567899998
Q ss_pred cCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCC-CCCHHHHHHhc
Q psy450 331 DGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSD-DVSLDSLVHHF 402 (478)
Q Consensus 331 ~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~ 402 (478)
+.. ...+++|.+|+.+..+.+.+++ |+ ..+.|.. ++.++...+++..+++.++.- +..+..++..+
T Consensus 152 EeP--p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~-l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s 218 (620)
T PRK14954 152 EEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKR-IPLDEIQSQLQMICRAEGIQIDADALQLIARKA 218 (620)
T ss_pred hCC--CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 853 3446666667777888889988 77 5777765 677887778887776554322 22366666665
No 167
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.43 E-value=1e-10 Score=105.60 Aligned_cols=195 Identities=20% Similarity=0.280 Sum_probs=138.5
Q ss_pred CCCCHHHHHHHHHHhhhhcccCC-CCCCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHH
Q psy450 174 RDLQKEDFQQIYDDLQSRYSDQL-DAPSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAK 252 (478)
Q Consensus 174 ~~it~~d~~~a~~~~~~~~~~~~-~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~ 252 (478)
+.....|+..+....-......+ ..+..+.+.+.+|+|.+.+++.|.+....+. .|.+.+++||||..|||||++++
T Consensus 26 ~~~~~~Dw~~a~~f~~~~~~~~L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVK 103 (287)
T COG2607 26 PAPGAEDWNEALAFRWRPAIGYLEPVPDPDPIDLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVK 103 (287)
T ss_pred CCCCcCchhHhhHHhcccccCcccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHH
Confidence 55666777766554433333333 3455566889999999999999988776655 46668899999999999999999
Q ss_pred HHHHHh---CCcEEEEechhhhhhhhcchHHHHHHHHHHhHhC-CCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHH
Q psy450 253 AVATEC---RMNFLAVKGPELLNKYIGQSEENIRNVFLKARSA-APCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLA 328 (478)
Q Consensus 253 ~la~~~---~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~ 328 (478)
|+.+++ +..+++|+..++.. +-.+++..+.. ..-|||+||+--= ..+.....|-.
T Consensus 104 A~~~e~~~~glrLVEV~k~dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe------------~gd~~yK~LKs 162 (287)
T COG2607 104 ALLNEYADEGLRLVEVDKEDLAT---------LPDLVELLRARPEKFILFCDDLSFE------------EGDDAYKALKS 162 (287)
T ss_pred HHHHHHHhcCCeEEEEcHHHHhh---------HHHHHHHHhcCCceEEEEecCCCCC------------CCchHHHHHHH
Confidence 998887 56789998877643 23344444432 2469999985221 11334556666
Q ss_pred hhcCCCC--CCCeEEEEEcCCCCCCCcccc--------------------CCCCCCeEEEeCCCCCHHHHHHHHHHHHhc
Q psy450 329 EMDGVHT--SQDVFILGATNRVDLLDPAIL--------------------RPGRLDKSLYVGLYEDRISQLGVLKAVVRK 386 (478)
Q Consensus 329 ~l~~~~~--~~~v~vI~ttn~~~~ld~~l~--------------------~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~ 386 (478)
.++|--. ..+|+|.+|+|+.+.++..+. -.-||.-.+.|.. ++.++...|+..++++
T Consensus 163 ~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~-~~Q~~YL~~V~~~a~~ 241 (287)
T COG2607 163 ALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYP-CDQDEYLKIVDHYAKH 241 (287)
T ss_pred HhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccC-CCHHHHHHHHHHHHHH
Confidence 6776433 347999999999766653221 1239999999974 8999999999999999
Q ss_pred CCCCCC
Q psy450 387 FKLSDD 392 (478)
Q Consensus 387 ~~~~~~ 392 (478)
.+++-+
T Consensus 242 ~~l~~~ 247 (287)
T COG2607 242 FGLDIS 247 (287)
T ss_pred cCCCCC
Confidence 887653
No 168
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.42 E-value=1.4e-12 Score=127.57 Aligned_cols=162 Identities=22% Similarity=0.316 Sum_probs=102.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC-------Cc--EEEEech----
Q psy450 202 PNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR-------MN--FLAVKGP---- 268 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~-------~~--~~~v~~~---- 268 (478)
....|++++|++.+++.+.-.+..+ + ..|+||.|+||||||++|+++++.+. .+ +..+.+.
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~----~--~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~ 76 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDP----G--IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWA 76 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhcc----C--CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccc
Confidence 3567999999999999877543221 1 35799999999999999999999883 21 1111100
Q ss_pred -----hhhh-------hhhcchHHHHHH-------------HHHHh--HhCCCeEEEEcCCccccCCCCCCCCCchhHHH
Q psy450 269 -----ELLN-------KYIGQSEENIRN-------------VFLKA--RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDR 321 (478)
Q Consensus 269 -----~l~~-------~~~g~~~~~~~~-------------~~~~a--~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 321 (478)
++.. .-.+.++..+-. .|..- ......+||+||++.+. ..
T Consensus 77 ~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~-------------~~ 143 (334)
T PRK13407 77 HVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE-------------DH 143 (334)
T ss_pred cccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC-------------HH
Confidence 0000 000101111100 01100 01122599999999986 34
Q ss_pred HHHHHHHhhcCCC-----------CCCCeEEEEEcCCCC-CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHH
Q psy450 322 VVSQLLAEMDGVH-----------TSQDVFILGATNRVD-LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVV 384 (478)
Q Consensus 322 ~~~~ll~~l~~~~-----------~~~~v~vI~ttn~~~-~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~ 384 (478)
++..|+..|+.-. ...++++++|+|..+ .++++++. ||...+.++.|.+.++|.+|++...
T Consensus 144 ~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 144 IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 5666766665321 234688888888654 58889999 9999999988666689999997643
No 169
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.42 E-value=9.2e-12 Score=123.03 Aligned_cols=203 Identities=21% Similarity=0.209 Sum_probs=126.8
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC-----CcEEEEechhhhh
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR-----MNFLAVKGPELLN 272 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~-----~~~~~v~~~~l~~ 272 (478)
...+.+.+|++++|.+.+++.+...+... ...+++|+||||||||++++++++.+. ..++.+++++..
T Consensus 8 ~~kyrP~~~~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~- 80 (319)
T PRK00440 8 VEKYRPRTLDEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER- 80 (319)
T ss_pred chhhCCCcHHHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc-
Confidence 34455678999999999999988876431 133589999999999999999999873 234555433211
Q ss_pred hhhcchHHHHHHHHHHh-H----h-CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcC
Q psy450 273 KYIGQSEENIRNVFLKA-R----S-AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATN 346 (478)
Q Consensus 273 ~~~g~~~~~~~~~~~~a-~----~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn 346 (478)
....+...+... . . ..+.+|+|||+|.+.. ...+.|...++... ....+|.++|
T Consensus 81 -----~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-------------~~~~~L~~~le~~~--~~~~lIl~~~ 140 (319)
T PRK00440 81 -----GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-------------DAQQALRRTMEMYS--QNTRFILSCN 140 (319)
T ss_pred -----chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-------------HHHHHHHHHHhcCC--CCCeEEEEeC
Confidence 111122222111 1 1 2356999999998852 23345666666433 2345666777
Q ss_pred CCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCC-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Q psy450 347 RVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSD-DVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRR 425 (478)
Q Consensus 347 ~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r 425 (478)
.+..+.+++.+ |+. .+.++. ++.++...+++.++++.++.- +..+..++..+ . +|++.+.+.....+..
T Consensus 141 ~~~~l~~~l~s--r~~-~~~~~~-l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~-~----gd~r~~~~~l~~~~~~- 210 (319)
T PRK00440 141 YSSKIIDPIQS--RCA-VFRFSP-LKKEAVAERLRYIAENEGIEITDDALEAIYYVS-E----GDMRKAINALQAAAAT- 210 (319)
T ss_pred CccccchhHHH--Hhh-eeeeCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-C----CCHHHHHHHHHHHHHc-
Confidence 77777778887 875 477775 678888889988887665432 22366666654 2 3444443333211110
Q ss_pred HHhcCCCCCCCCccccHHHHHhc
Q psy450 426 IITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 426 ~~~~~~~~~~~~~~it~~d~~~A 448 (478)
...||.+++..+
T Consensus 211 -----------~~~it~~~v~~~ 222 (319)
T PRK00440 211 -----------GKEVTEEAVYKI 222 (319)
T ss_pred -----------CCCCCHHHHHHH
Confidence 135788887777
No 170
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=6.9e-12 Score=132.78 Aligned_cols=172 Identities=18% Similarity=0.210 Sum_probs=120.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc-------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------- 261 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------- 261 (478)
+...+|++++|++.+++.|...+..- ..+.++||+||+|+|||++|+++|+.+.+.
T Consensus 10 yRP~~f~~liGq~~i~~~L~~~l~~~-----rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i 84 (620)
T PRK14948 10 YRPQRFDELVGQEAIATTLKNALISN-----RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAI 84 (620)
T ss_pred hCCCcHhhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHH
Confidence 45578999999999999998877642 225679999999999999999999998653
Q ss_pred -------EEEEechhhhhhhhcchHHHHHHHHHHhHh----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhh
Q psy450 262 -------FLAVKGPELLNKYIGQSEENIRNVFLKARS----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEM 330 (478)
Q Consensus 262 -------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l 330 (478)
++.++. ..+.....+++++..+.. ....|++|||+|.|. ....+.|++.+
T Consensus 85 ~~g~h~D~~ei~~------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt-------------~~a~naLLK~L 145 (620)
T PRK14948 85 AAGNALDVIEIDA------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS-------------TAAFNALLKTL 145 (620)
T ss_pred hcCCCccEEEEec------cccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC-------------HHHHHHHHHHH
Confidence 112211 112334567777766642 334699999999986 35678899999
Q ss_pred cCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhc
Q psy450 331 DGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHF 402 (478)
Q Consensus 331 ~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~ 402 (478)
+. ....+++|++|++++.+.+.+++ |+ ..+.|.. +..++....++..+++.++.-+ ..+..++..+
T Consensus 146 Ee--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~-l~~~ei~~~L~~ia~kegi~is~~al~~La~~s 212 (620)
T PRK14948 146 EE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRR-IPLEAMVQHLSEIAEKESIEIEPEALTLVAQRS 212 (620)
T ss_pred hc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecC-CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 85 34567777788888888899998 88 4566765 4666666666666655443322 2255555554
No 171
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.40 E-value=4.9e-12 Score=109.35 Aligned_cols=137 Identities=34% Similarity=0.503 Sum_probs=89.1
Q ss_pred CcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhhhcchHHH---HHH
Q psy450 211 GLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKYIGQSEEN---IRN 284 (478)
Q Consensus 211 g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~~g~~~~~---~~~ 284 (478)
|.+.+...+...+... ...+++++||||||||++++.+++.+ +.+++.+++.+............ ...
T Consensus 2 ~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (151)
T cd00009 2 GQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRL 75 (151)
T ss_pred chHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhH
Confidence 4445555555444322 25679999999999999999999998 88999999877654332221111 112
Q ss_pred HHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC----CCCeEEEEEcCCCC--CCCccccCC
Q psy450 285 VFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT----SQDVFILGATNRVD--LLDPAILRP 358 (478)
Q Consensus 285 ~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~----~~~v~vI~ttn~~~--~ld~~l~~~ 358 (478)
.........+.++++||++.+.. .....++..+..... ..++.+|+++|... .+++.+.+
T Consensus 76 ~~~~~~~~~~~~lilDe~~~~~~-------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~- 141 (151)
T cd00009 76 LFELAEKAKPGVLFIDEIDSLSR-------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD- 141 (151)
T ss_pred HHHhhccCCCeEEEEeChhhhhH-------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh-
Confidence 22333455678999999998731 122333333333322 35788899998876 67778887
Q ss_pred CCCCeEEEeC
Q psy450 359 GRLDKSLYVG 368 (478)
Q Consensus 359 ~Rf~~~i~~~ 368 (478)
||+..+.++
T Consensus 142 -r~~~~i~~~ 150 (151)
T cd00009 142 -RLDIRIVIP 150 (151)
T ss_pred -hhccEeecC
Confidence 998777664
No 172
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=2.5e-11 Score=128.82 Aligned_cols=184 Identities=16% Similarity=0.220 Sum_probs=121.8
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcE------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNF------------------ 262 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~------------------ 262 (478)
+.+.+|++++|++.+++.|...+.. +..++.+||+||+|+|||++|+.+|+.+.+..
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~-----~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAE-----GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIA 84 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHh-----CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHh
Confidence 4567899999999999998877653 22366789999999999999999999885422
Q ss_pred -------EEEechhhhhhhhcchHHHHHHHHHHhHh----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhc
Q psy450 263 -------LAVKGPELLNKYIGQSEENIRNVFLKARS----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMD 331 (478)
Q Consensus 263 -------~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~ 331 (478)
+.++.. .......++++.+.+.. ....|++|||+|.|. ....+.|++.++
T Consensus 85 ~~~~~d~~~i~~~------~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~-------------~~a~naLLk~LE 145 (585)
T PRK14950 85 EGSAVDVIEMDAA------SHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS-------------TAAFNALLKTLE 145 (585)
T ss_pred cCCCCeEEEEecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC-------------HHHHHHHHHHHh
Confidence 111111 01123334555443322 335699999999886 345678888888
Q ss_pred CCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHH
Q psy450 332 GVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGAD 410 (478)
Q Consensus 332 ~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~d 410 (478)
.. ...+++|.+++.++.+.+.+++ |+. .+.|.. ++..+...+++..+.+.++.-+ ..+..++..+ +| +.++
T Consensus 146 ep--p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~-l~~~el~~~L~~~a~~egl~i~~eal~~La~~s-~G-dlr~ 217 (585)
T PRK14950 146 EP--PPHAIFILATTEVHKVPATILS--RCQ-RFDFHR-HSVADMAAHLRKIAAAEGINLEPGALEAIARAA-TG-SMRD 217 (585)
T ss_pred cC--CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CC-CHHH
Confidence 53 3456677777778888888887 874 567765 6778888888877766554322 2255666654 32 4444
Q ss_pred HHHHHH
Q psy450 411 IYSICS 416 (478)
Q Consensus 411 i~~l~~ 416 (478)
+.+.+.
T Consensus 218 al~~Le 223 (585)
T PRK14950 218 AENLLQ 223 (585)
T ss_pred HHHHHH
Confidence 444444
No 173
>PRK09087 hypothetical protein; Validated
Probab=99.35 E-value=1.9e-11 Score=114.05 Aligned_cols=199 Identities=14% Similarity=0.087 Sum_probs=114.4
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcc
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQ 277 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~ 277 (478)
....+..++++++.-+.....+. .+..+. +.....++|+||+|+|||||++++++..+.. +++..++...
T Consensus 12 ~~~~~~~~~~~Fi~~~~N~~a~~-~l~~~~---~~~~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~---- 81 (226)
T PRK09087 12 FSHDPAYGRDDLLVTESNRAAVS-LVDHWP---NWPSPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSD---- 81 (226)
T ss_pred CCCCCCCChhceeecCchHHHHH-HHHhcc---cCCCCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchH----
Confidence 44556778999875222222222 222211 2223449999999999999999999876554 4444332211
Q ss_pred hHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC---CCcc
Q psy450 278 SEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDL---LDPA 354 (478)
Q Consensus 278 ~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~---ld~~ 354 (478)
.+..... .+|+|||++.+... +..+..+++.+ ...++.+|++++..|.. ..+.
T Consensus 82 -------~~~~~~~---~~l~iDDi~~~~~~-----------~~~lf~l~n~~---~~~g~~ilits~~~p~~~~~~~~d 137 (226)
T PRK09087 82 -------AANAAAE---GPVLIEDIDAGGFD-----------ETGLFHLINSV---RQAGTSLLMTSRLWPSSWNVKLPD 137 (226)
T ss_pred -------HHHhhhc---CeEEEECCCCCCCC-----------HHHHHHHHHHH---HhCCCeEEEECCCChHHhcccccc
Confidence 1111111 38889999976311 12233333332 33445666666655532 3678
Q ss_pred ccCCCCCCeEEEeCC-CCCHHHHHHHHHHHHhcCCCCC-CCCHHHHHHhcCCCCCHHHHHHHH---HHHHHHHHHHHHhc
Q psy450 355 ILRPGRLDKSLYVGL-YEDRISQLGVLKAVVRKFKLSD-DVSLDSLVHHFPSQMSGADIYSIC---SNAWTRAIRRIITS 429 (478)
Q Consensus 355 l~~~~Rf~~~i~~~~-pp~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~sg~di~~l~---~~a~~~a~~r~~~~ 429 (478)
+++ ||.....+.+ ||+.+.|..+++..++..++.- +.-++.|+.+.+ ++++.+. ......+..
T Consensus 138 L~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~-----r~~~~l~~~l~~L~~~~~~----- 205 (226)
T PRK09087 138 LKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRME-----RSLFAAQTIVDRLDRLALE----- 205 (226)
T ss_pred HHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHH-----
Confidence 888 9875555544 5899999999998887654432 222777777762 3444443 332222222
Q ss_pred CCCCCCCCccccHHHHHhc
Q psy450 430 APQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 430 ~~~~~~~~~~it~~d~~~A 448 (478)
....+|...++++
T Consensus 206 ------~~~~it~~~~~~~ 218 (226)
T PRK09087 206 ------RKSRITRALAAEV 218 (226)
T ss_pred ------hCCCCCHHHHHHH
Confidence 1346888888887
No 174
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.34 E-value=1.2e-11 Score=121.33 Aligned_cols=163 Identities=18% Similarity=0.314 Sum_probs=105.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC-------CcEEEE-e-----c
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR-------MNFLAV-K-----G 267 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~-------~~~~~v-~-----~ 267 (478)
.+...|.+++|++++|..|.-.+..+. ..++||.|++|||||++++++++.+. .+|... + +
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p~------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~ 84 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDPK------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMS 84 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCCC------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhc
Confidence 456779999999999999887665543 45799999999999999999987763 222200 0 0
Q ss_pred hhhhhh-------------------hhcchHHHH------HHHHHHhH---------hCCCeEEEEcCCccccCCCCCCC
Q psy450 268 PELLNK-------------------YIGQSEENI------RNVFLKAR---------SAAPCVVFFDELDSLAPRRGQED 313 (478)
Q Consensus 268 ~~l~~~-------------------~~g~~~~~~------~~~~~~a~---------~~~p~il~iDeid~l~~~~~~~~ 313 (478)
.++... -.|.++..+ ...+.... .....+||+||++.+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~------ 158 (350)
T CHL00081 85 DEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD------ 158 (350)
T ss_pred hhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH------
Confidence 000000 011122221 11111110 11235999999999973
Q ss_pred CCchhHHHHHHHHHHhhcC---------C--CCCCCeEEEEEcCCCC-CCCccccCCCCCCeEEEeCCCCCHHHHHHHHH
Q psy450 314 QSSGVMDRVVSQLLAEMDG---------V--HTSQDVFILGATNRVD-LLDPAILRPGRLDKSLYVGLYEDRISQLGVLK 381 (478)
Q Consensus 314 ~~~~~~~~~~~~ll~~l~~---------~--~~~~~v~vI~ttn~~~-~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~ 381 (478)
.....|+..|+. . ....++++|+|.|..+ .+++++.. ||...+.+..|...+.+.+|++
T Consensus 159 -------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~il~ 229 (350)
T CHL00081 159 -------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVKIVE 229 (350)
T ss_pred -------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHHHHH
Confidence 445556666543 1 1134688888877654 58899999 9999999998655788989997
Q ss_pred HHH
Q psy450 382 AVV 384 (478)
Q Consensus 382 ~~~ 384 (478)
...
T Consensus 230 ~~~ 232 (350)
T CHL00081 230 QRT 232 (350)
T ss_pred hhh
Confidence 653
No 175
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=4.8e-11 Score=126.40 Aligned_cols=182 Identities=19% Similarity=0.247 Sum_probs=125.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc---------------------
Q psy450 203 NVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN--------------------- 261 (478)
Q Consensus 203 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~--------------------- 261 (478)
+.+|++++|++.+++.|...+.. +..++.+||+||+|+|||++|+.+|+.+.+.
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~-----~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~ 87 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT-----NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQ 87 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcC
Confidence 46799999999999998887653 3336779999999999999999999987532
Q ss_pred ----EEEEechhhhhhhhcchHHHHHHHHHHhHh----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCC
Q psy450 262 ----FLAVKGPELLNKYIGQSEENIRNVFLKARS----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGV 333 (478)
Q Consensus 262 ----~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 333 (478)
++.+++.+ ......++.+...+.. ...-|++|||+|.+. ....+.|++.++..
T Consensus 88 ~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls-------------~~a~naLLK~LEep 148 (614)
T PRK14971 88 RSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS-------------QAAFNAFLKTLEEP 148 (614)
T ss_pred CCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC-------------HHHHHHHHHHHhCC
Confidence 22232211 1123456666655532 234599999999996 34678899999853
Q ss_pred CCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCC-CHHHHHHhcCCCCCHHHHH
Q psy450 334 HTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDV-SLDSLVHHFPSQMSGADIY 412 (478)
Q Consensus 334 ~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~sg~di~ 412 (478)
....++|.+|+.+..+-+.+++ |+. .+.|.. ++.++...+++..+.+.++..+. .+..++..+ |-+.+++.
T Consensus 149 --p~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~-ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s--~gdlr~al 220 (614)
T PRK14971 149 --PSYAIFILATTEKHKILPTILS--RCQ-IFDFNR-IQVADIVNHLQYVASKEGITAEPEALNVIAQKA--DGGMRDAL 220 (614)
T ss_pred --CCCeEEEEEeCCchhchHHHHh--hhh-eeecCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHH
Confidence 3456677777777889999998 874 577765 67788888888877776655332 256677665 33444444
Q ss_pred HHHH
Q psy450 413 SICS 416 (478)
Q Consensus 413 ~l~~ 416 (478)
+.+.
T Consensus 221 ~~Le 224 (614)
T PRK14971 221 SIFD 224 (614)
T ss_pred HHHH
Confidence 4443
No 176
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.30 E-value=3.3e-11 Score=118.33 Aligned_cols=158 Identities=19% Similarity=0.285 Sum_probs=99.4
Q ss_pred CcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh-------CCcEE---------EEech
Q psy450 205 SWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC-------RMNFL---------AVKGP 268 (478)
Q Consensus 205 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~-------~~~~~---------~v~~~ 268 (478)
.|..|+|++++|..|.-.+..+. ..+++|.|+||+|||+++++++..+ +.++- ..+|.
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 75 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPK------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVR 75 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCC------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHh
Confidence 47889999999988765554432 4579999999999999999999877 22221 00000
Q ss_pred hh----------------hhhhhcchHHHHHHHH--HHh-------------HhCCCeEEEEcCCccccCCCCCCCCCch
Q psy450 269 EL----------------LNKYIGQSEENIRNVF--LKA-------------RSAAPCVVFFDELDSLAPRRGQEDQSSG 317 (478)
Q Consensus 269 ~l----------------~~~~~g~~~~~~~~~~--~~a-------------~~~~p~il~iDeid~l~~~~~~~~~~~~ 317 (478)
.. ...-.|.++..+..-. ..+ ......+||+||++.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~---------- 145 (337)
T TIGR02030 76 IRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED---------- 145 (337)
T ss_pred hhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH----------
Confidence 00 0000011111111110 000 012235999999999863
Q ss_pred hHHHHHHHHHHhhcCCC-----------CCCCeEEEEEcCCCC-CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHH
Q psy450 318 VMDRVVSQLLAEMDGVH-----------TSQDVFILGATNRVD-LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAV 383 (478)
Q Consensus 318 ~~~~~~~~ll~~l~~~~-----------~~~~v~vI~ttn~~~-~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~ 383 (478)
.....|+..|+.-. ...++++|+|.|..+ .++++++. ||...+.++.|.+.++|.+|++..
T Consensus 146 ---~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL~~~ 218 (337)
T TIGR02030 146 ---HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIVERR 218 (337)
T ss_pred ---HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHHHhh
Confidence 45566666664211 124688888887654 58899999 999999999865668888888764
No 177
>PHA02244 ATPase-like protein
Probab=99.29 E-value=5.6e-10 Score=108.99 Aligned_cols=120 Identities=21% Similarity=0.297 Sum_probs=77.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhc---chHHHHHHHHHHhHhCCCeEEEEcCCccccCCCC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIG---QSEENIRNVFLKARSAAPCVVFFDELDSLAPRRG 310 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g---~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~ 310 (478)
..+++|+||||||||++|+++|..++.+++.++...-.....| ........-|-.+. ...++++|||++.+.+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p~-- 195 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASIPE-- 195 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCCHH--
Confidence 4459999999999999999999999999999884211111111 11111111222222 23469999999988632
Q ss_pred CCCCCchhHHHHHHHHHHhhcC---------CCCCCCeEEEEEcCCC-----------CCCCccccCCCCCCeEEEeCCC
Q psy450 311 QEDQSSGVMDRVVSQLLAEMDG---------VHTSQDVFILGATNRV-----------DLLDPAILRPGRLDKSLYVGLY 370 (478)
Q Consensus 311 ~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~v~vI~ttn~~-----------~~ld~~l~~~~Rf~~~i~~~~p 370 (478)
+...|...++. .....++.+|+|+|.+ ..++++++. ||- .++++.|
T Consensus 196 -----------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp 261 (383)
T PHA02244 196 -----------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYD 261 (383)
T ss_pred -----------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCC
Confidence 23333333321 1123578999999984 457899999 994 6888874
No 178
>KOG1969|consensus
Probab=99.29 E-value=1.2e-10 Score=119.86 Aligned_cols=202 Identities=17% Similarity=0.210 Sum_probs=128.5
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhh---------------------------hhhCCCC-CceEEEeCCCCChHHH
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGV---------------------------NRTSGLK-RSGLLLYGPPGTGKTL 249 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~---------------------------~~~~~~~-~~~iLl~Gp~GtGKT~ 249 (478)
...+.+..|.|+.|-+.+-..+...+..+ ....+.+ .+-+||+||||.||||
T Consensus 262 Vdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTT 341 (877)
T KOG1969|consen 262 VDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTT 341 (877)
T ss_pred ecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhH
Confidence 44556667888888887777666655443 0011222 3458899999999999
Q ss_pred HHHHHHHHhCCcEEEEechhhhhhhhcchHHHHHHHHHHh--------HhCCCeEEEEcCCccccCCCCCCCCCchhHHH
Q psy450 250 IAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKA--------RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDR 321 (478)
Q Consensus 250 la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a--------~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 321 (478)
||+.+|+..|..++.+|.++-. +...++..+..| ...+|.+|++||||--. ..
T Consensus 342 LAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-------------~~ 402 (877)
T KOG1969|consen 342 LAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-------------RA 402 (877)
T ss_pred HHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc-------------HH
Confidence 9999999999999999987643 333333333333 12578999999998543 22
Q ss_pred HHHHHHHhhc-------CCCC--C----------CCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHH
Q psy450 322 VVSQLLAEMD-------GVHT--S----------QDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKA 382 (478)
Q Consensus 322 ~~~~ll~~l~-------~~~~--~----------~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~ 382 (478)
.+..++..+. |-.. . -...|||.+|.... |+|+.---|.+.++|.. |......+-|+.
T Consensus 403 ~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f~~-p~~s~Lv~RL~~ 479 (877)
T KOG1969|consen 403 AVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIAFVP-PSQSRLVERLNE 479 (877)
T ss_pred HHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEEecC-CChhHHHHHHHH
Confidence 3333333322 1000 0 01458999998776 67753226778888875 677766677777
Q ss_pred HHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Q psy450 383 VVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRR 425 (478)
Q Consensus 383 ~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r 425 (478)
.+...+...+ ...|...+ .++..||+.+++.....+.+-
T Consensus 480 IC~rE~mr~d--~~aL~~L~--el~~~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 480 ICHRENMRAD--SKALNALC--ELTQNDIRSCINTLQFLASNV 518 (877)
T ss_pred HHhhhcCCCC--HHHHHHHH--HHhcchHHHHHHHHHHHHHhc
Confidence 6655554332 33343333 244569999998877766644
No 179
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=2e-10 Score=113.78 Aligned_cols=158 Identities=18% Similarity=0.196 Sum_probs=108.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc-------EEEE----echh-
Q psy450 202 PNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN-------FLAV----KGPE- 269 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~-------~~~v----~~~~- 269 (478)
.+..+++++|++.+++.|...+.. |..+..+||+||+|+|||++|+.+|+.+.+. .... .|..
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~-----grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c 92 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYRE-----GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVW 92 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHc-----CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHH
Confidence 456789999999999999887652 3337789999999999999999999988541 1000 1110
Q ss_pred --hhhh----h--h-------------cchHHHHHHHHHHh----HhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHH
Q psy450 270 --LLNK----Y--I-------------GQSEENIRNVFLKA----RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVS 324 (478)
Q Consensus 270 --l~~~----~--~-------------g~~~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 324 (478)
+... + . .-+...++.+.+.. ..+...|++|||+|.+. ....+
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~-------------~~aan 159 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN-------------RNAAN 159 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC-------------HHHHH
Confidence 0000 0 0 00123344443332 23445799999999997 34567
Q ss_pred HHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHH
Q psy450 325 QLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAV 383 (478)
Q Consensus 325 ~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~ 383 (478)
.|++.++.. ..+.++|..|+.|+.+.+.+++ |+ ..+.++. ++.++...+++..
T Consensus 160 aLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~p-l~~~~~~~~L~~~ 212 (351)
T PRK09112 160 AILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKP-LDDDELKKALSHL 212 (351)
T ss_pred HHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecC-CCHHHHHHHHHHh
Confidence 899988863 3455666667888999999998 98 5888875 7888888888764
No 180
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.28 E-value=6.6e-11 Score=114.27 Aligned_cols=138 Identities=14% Similarity=0.200 Sum_probs=94.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhh--hhcchHH----------HHHHHHHHhHhCCCeEEEEcC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK--YIGQSEE----------NIRNVFLKARSAAPCVVFFDE 301 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~--~~g~~~~----------~~~~~~~~a~~~~p~il~iDe 301 (478)
.++++|.||||||||++++.+|+.++.+++.+++...... ..|...- .....+..|.. .++++++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4569999999999999999999999999999988655443 3343211 11123334433 357899999
Q ss_pred CccccCCCCCCCCCchhHHHHHHHHHHh-----hc----CCCCCCCeEEEEEcCCCC------------CCCccccCCCC
Q psy450 302 LDSLAPRRGQEDQSSGVMDRVVSQLLAE-----MD----GVHTSQDVFILGATNRVD------------LLDPAILRPGR 360 (478)
Q Consensus 302 id~l~~~~~~~~~~~~~~~~~~~~ll~~-----l~----~~~~~~~v~vI~ttn~~~------------~ld~~l~~~~R 360 (478)
+|...++. ...++.++.. +. .+...+.+.||+|.|..+ .++++++. |
T Consensus 143 in~a~p~~----------~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--R 210 (327)
T TIGR01650 143 YDAGRPDV----------MFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--R 210 (327)
T ss_pred hhccCHHH----------HHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--h
Confidence 99886431 2334444432 11 111234688999999864 36889998 9
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHHh
Q psy450 361 LDKSLYVGLYEDRISQLGVLKAVVR 385 (478)
Q Consensus 361 f~~~i~~~~pp~~~~r~~il~~~~~ 385 (478)
|-..+.++. |+.++..+|+.....
T Consensus 211 F~i~~~~~Y-p~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 211 WSIVTTLNY-LEHDNEAAIVLAKAK 234 (327)
T ss_pred eeeEeeCCC-CCHHHHHHHHHhhcc
Confidence 988888887 577777788876543
No 181
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.28 E-value=3.3e-11 Score=128.89 Aligned_cols=156 Identities=21% Similarity=0.310 Sum_probs=103.6
Q ss_pred CcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC-------------------------
Q psy450 205 SWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR------------------------- 259 (478)
Q Consensus 205 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~------------------------- 259 (478)
.|..|+|++.++..|.-....+. ..++||.|++|||||++|+++++.+.
T Consensus 2 pf~~ivGq~~~~~al~~~av~~~------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~ 75 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDPR------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECR 75 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCCC------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhh
Confidence 47899999999987765544332 34699999999999999999998872
Q ss_pred ----------CcEEEEechhhhhhhhcch--HHHH--------HHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhH
Q psy450 260 ----------MNFLAVKGPELLNKYIGQS--EENI--------RNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVM 319 (478)
Q Consensus 260 ----------~~~~~v~~~~l~~~~~g~~--~~~~--------~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~ 319 (478)
.+|+.+.+.......+|.. ...+ ...+.. ....+|||||++.+.
T Consensus 76 ~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~---A~~GiL~lDEi~~l~------------- 139 (633)
T TIGR02442 76 RKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAE---AHRGILYIDEVNLLD------------- 139 (633)
T ss_pred hcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceee---cCCCeEEeChhhhCC-------------
Confidence 3555554432222222221 0000 011111 123599999999997
Q ss_pred HHHHHHHHHhhcCCC-----------CCCCeEEEEEcCCC-CCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHH
Q psy450 320 DRVVSQLLAEMDGVH-----------TSQDVFILGATNRV-DLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVV 384 (478)
Q Consensus 320 ~~~~~~ll~~l~~~~-----------~~~~v~vI~ttn~~-~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~ 384 (478)
...++.|+..|+.-. ...++.+|+|+|.. ..+.++|+. ||+..+.++.+.+.+++.++++...
T Consensus 140 ~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 140 DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHH
Confidence 356677777765321 12468899998853 357889999 9998888887666778888876543
No 182
>KOG1051|consensus
Probab=99.26 E-value=6.4e-11 Score=126.86 Aligned_cols=125 Identities=25% Similarity=0.355 Sum_probs=90.6
Q ss_pred cccCcHHHHHHHHHHHHhhhhhCCC--CCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhh---------h
Q psy450 208 DIGGLSKLKAEILSTFRGVNRTSGL--KRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLN---------K 273 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~~~~~~~--~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~---------~ 273 (478)
.++|++++...+.+.+.......+. +...++|.||.|+|||-+|+++|..+ .-.++.++++++.. .
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~g 642 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPG 642 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcc
Confidence 4688888888888877776544444 36678999999999999999999988 45789999986432 1
Q ss_pred hhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC---------CCCeEEEEE
Q psy450 274 YIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT---------SQDVFILGA 344 (478)
Q Consensus 274 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---------~~~v~vI~t 344 (478)
|.|..+. ..+....+....+||+|||||...+ .+++.|+..+|..+- -++++||+|
T Consensus 643 yvG~e~g--g~LteavrrrP~sVVLfdeIEkAh~-------------~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMT 707 (898)
T KOG1051|consen 643 YVGKEEG--GQLTEAVKRRPYSVVLFEEIEKAHP-------------DVLNILLQLLDRGRLTDSHGREVDFKNAIFIMT 707 (898)
T ss_pred cccchhH--HHHHHHHhcCCceEEEEechhhcCH-------------HHHHHHHHHHhcCccccCCCcEeeccceEEEEe
Confidence 3444333 2455555667779999999999873 467777777765432 246999999
Q ss_pred cCC
Q psy450 345 TNR 347 (478)
Q Consensus 345 tn~ 347 (478)
+|.
T Consensus 708 sn~ 710 (898)
T KOG1051|consen 708 SNV 710 (898)
T ss_pred ccc
Confidence 875
No 183
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=1.9e-10 Score=113.24 Aligned_cols=152 Identities=16% Similarity=0.226 Sum_probs=107.8
Q ss_pred CcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc--------EEEEechhhhhhhhc
Q psy450 205 SWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN--------FLAVKGPELLNKYIG 276 (478)
Q Consensus 205 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~--------~~~v~~~~l~~~~~g 276 (478)
+|++++|++.+++.+...+. .+..++.+||+||+|+|||++|+.+++.+-+. +..+...+ + ..
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~-----~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~--~--~~ 72 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII-----KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN--K--KS 72 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH-----cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc--C--CC
Confidence 58999999999999887763 23347788999999999999999999987332 22332210 0 11
Q ss_pred chHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCC
Q psy450 277 QSEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLD 352 (478)
Q Consensus 277 ~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 352 (478)
-....++++...+. .....|++||++|.+. ....+.|++.++. +..++++|.+|+.++.+.
T Consensus 73 i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~-------------~~a~naLLK~LEe--pp~~t~~il~~~~~~~ll 137 (313)
T PRK05564 73 IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT-------------EQAQNAFLKTIEE--PPKGVFIILLCENLEQIL 137 (313)
T ss_pred CCHHHHHHHHHHHhcCcccCCceEEEEechhhcC-------------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCc
Confidence 12334666555332 2345699999999886 4567899999995 345666776778889999
Q ss_pred ccccCCCCCCeEEEeCCCCCHHHHHHHHHHHH
Q psy450 353 PAILRPGRLDKSLYVGLYEDRISQLGVLKAVV 384 (478)
Q Consensus 353 ~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~ 384 (478)
+.+++ |+ ..+.+.. ++.++...+++...
T Consensus 138 ~TI~S--Rc-~~~~~~~-~~~~~~~~~l~~~~ 165 (313)
T PRK05564 138 DTIKS--RC-QIYKLNR-LSKEEIEKFISYKY 165 (313)
T ss_pred HHHHh--hc-eeeeCCC-cCHHHHHHHHHHHh
Confidence 99999 88 4777775 67777777776544
No 184
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.9e-10 Score=121.82 Aligned_cols=173 Identities=18% Similarity=0.318 Sum_probs=128.8
Q ss_pred CCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh----------CCcEEEEechhhh--
Q psy450 204 VSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC----------RMNFLAVKGPELL-- 271 (478)
Q Consensus 204 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~----------~~~~~~v~~~~l~-- 271 (478)
-.+|.++|-++.+.++.+.+.... .++-+|.|+||+|||.++..+|... +..++.++...+.
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAG 240 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRT------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAG 240 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccC------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhcc
Confidence 457889999998888877765432 4456899999999999999999876 5678888888876
Q ss_pred hhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC-
Q psy450 272 NKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDL- 350 (478)
Q Consensus 272 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~- 350 (478)
.+|-|+.+..++.+++......+.||||||+|.+.+..+..+. +. ..-+-|.-.+ ..+.+-+|++|+.-+.
T Consensus 241 akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~-a~---DAaNiLKPaL----ARGeL~~IGATT~~EYR 312 (786)
T COG0542 241 AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG-AM---DAANLLKPAL----ARGELRCIGATTLDEYR 312 (786)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc-cc---chhhhhHHHH----hcCCeEEEEeccHHHHH
Confidence 4588999999999999999888999999999999976543221 11 1222222222 3456778888875432
Q ss_pred ----CCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCC
Q psy450 351 ----LDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVS 394 (478)
Q Consensus 351 ----ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~ 394 (478)
-|++|-| ||. .+.+.- |+.++-..||+.+-.++.....|.
T Consensus 313 k~iEKD~AL~R--RFQ-~V~V~E-Ps~e~ti~ILrGlk~~yE~hH~V~ 356 (786)
T COG0542 313 KYIEKDAALER--RFQ-KVLVDE-PSVEDTIAILRGLKERYEAHHGVR 356 (786)
T ss_pred HHhhhchHHHh--cCc-eeeCCC-CCHHHHHHHHHHHHHHHHHccCce
Confidence 4889999 996 556665 799999999998877666555443
No 185
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.21 E-value=1.9e-10 Score=114.06 Aligned_cols=148 Identities=24% Similarity=0.379 Sum_probs=96.8
Q ss_pred ccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhh--hhcchHHHHH---
Q psy450 209 IGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK--YIGQSEENIR--- 283 (478)
Q Consensus 209 i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~--~~g~~~~~~~--- 283 (478)
++|.++++..+...+.. ..++||.||||||||++|+.+|..++.+|+.+.|..-... ..|...-...
T Consensus 26 ~~g~~~~~~~~l~a~~~--------~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~ 97 (329)
T COG0714 26 VVGDEEVIELALLALLA--------GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLE 97 (329)
T ss_pred eeccHHHHHHHHHHHHc--------CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhcc
Confidence 45555555544332221 5569999999999999999999999999999998643221 1222111111
Q ss_pred -H--------HHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC----------CCCCCCeEEEEE
Q psy450 284 -N--------VFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG----------VHTSQDVFILGA 344 (478)
Q Consensus 284 -~--------~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~----------~~~~~~v~vI~t 344 (478)
. +|.... +++++|||+...+ .+.+.|+..|+. +.-...++||+|
T Consensus 98 ~~~~~~~~gpl~~~~~----~ill~DEInra~p-------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT 160 (329)
T COG0714 98 PGEFRFVPGPLFAAVR----VILLLDEINRAPP-------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIAT 160 (329)
T ss_pred CCeEEEecCCcccccc----eEEEEeccccCCH-------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEc
Confidence 0 111101 3999999998874 455666666554 233467889999
Q ss_pred cCC-----CCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHH
Q psy450 345 TNR-----VDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAV 383 (478)
Q Consensus 345 tn~-----~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~ 383 (478)
+|. -..+++++++ ||-..++++.|+..++...++...
T Consensus 161 ~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 161 QNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARV 202 (329)
T ss_pred cCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhC
Confidence 993 3558999999 999999999864555555455443
No 186
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=2.7e-10 Score=113.44 Aligned_cols=158 Identities=19% Similarity=0.201 Sum_probs=108.7
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcE-------------------
Q psy450 202 PNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNF------------------- 262 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~------------------- 262 (478)
.+.++++|+|++.+++.|...+.. +..+..+||+||+|+||+++|.++|+.+-+.-
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~-----~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~ 88 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS-----GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPD 88 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-----CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCC
Confidence 456789999999999999877654 33377899999999999999999999873211
Q ss_pred ---------------EEEech--hhhhhh-hcchHHHHHHHHHHh----HhCCCeEEEEcCCccccCCCCCCCCCchhHH
Q psy450 263 ---------------LAVKGP--ELLNKY-IGQSEENIRNVFLKA----RSAAPCVVFFDELDSLAPRRGQEDQSSGVMD 320 (478)
Q Consensus 263 ---------------~~v~~~--~l~~~~-~g~~~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~ 320 (478)
+.+... +-.... ..-....++.+.+.+ ....+.|++|||+|.+. .
T Consensus 89 c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~-------------~ 155 (365)
T PRK07471 89 HPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN-------------A 155 (365)
T ss_pred ChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------------H
Confidence 111100 000000 000123455554443 23567899999999986 4
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHH
Q psy450 321 RVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAV 383 (478)
Q Consensus 321 ~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~ 383 (478)
...+.|++.++. ...+.++|.+|+.++.+.+.+++ |+ ..+.++. ++.++-..++...
T Consensus 156 ~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~-l~~~~i~~~L~~~ 212 (365)
T PRK07471 156 NAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRP-LAPEDVIDALAAA 212 (365)
T ss_pred HHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCC-CCHHHHHHHHHHh
Confidence 567889999885 34456777789999999999988 88 4667764 6777777777654
No 187
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.19 E-value=4.2e-10 Score=102.35 Aligned_cols=141 Identities=18% Similarity=0.218 Sum_probs=94.6
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHHhCCc------------------------EEEEechhhhhhhhcchHHHHHHHHHH
Q psy450 233 KRSGLLLYGPPGTGKTLIAKAVATECRMN------------------------FLAVKGPELLNKYIGQSEENIRNVFLK 288 (478)
Q Consensus 233 ~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------------~~~v~~~~l~~~~~g~~~~~~~~~~~~ 288 (478)
.+..+||+||+|+|||++|+.+++.+... +..+.... ..-....++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-----~~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-----QSIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-----CcCCHHHHHHHHHH
Confidence 36779999999999999999999987432 22222110 01123455555555
Q ss_pred hHh----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeE
Q psy450 289 ARS----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKS 364 (478)
Q Consensus 289 a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~ 364 (478)
+.. ..+.|++|||+|.+. ....+.|+..++.. .....+|.+|+.+..+.+++++ |+ ..
T Consensus 88 ~~~~~~~~~~kviiide~~~l~-------------~~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~-~~ 149 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMN-------------EAAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RC-QV 149 (188)
T ss_pred HccCcccCCeEEEEEechhhhC-------------HHHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hc-EE
Confidence 533 345699999999986 24567788888863 3456677777788899999998 87 47
Q ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhc
Q psy450 365 LYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHF 402 (478)
Q Consensus 365 i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~ 402 (478)
+.+.. ++.++..++++.. +++.+ .+..++..+
T Consensus 150 ~~~~~-~~~~~~~~~l~~~----gi~~~-~~~~i~~~~ 181 (188)
T TIGR00678 150 LPFPP-LSEEALLQWLIRQ----GISEE-AAELLLALA 181 (188)
T ss_pred eeCCC-CCHHHHHHHHHHc----CCCHH-HHHHHHHHc
Confidence 77775 6888887888665 33322 255555544
No 188
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.18 E-value=8e-10 Score=110.77 Aligned_cols=140 Identities=22% Similarity=0.378 Sum_probs=86.5
Q ss_pred cccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc-------EEEEec----hhhhhhh
Q psy450 206 WEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN-------FLAVKG----PELLNKY 274 (478)
Q Consensus 206 ~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~-------~~~v~~----~~l~~~~ 274 (478)
++++.+.+...+.+...+.. .++++|+||||||||++|+.+|..+... ++.+.. .+++..+
T Consensus 174 l~d~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~ 245 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY 245 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc
Confidence 45666666666666544331 4579999999999999999999987431 122221 2222222
Q ss_pred h----cch--HHHHHHHHHHhHh--CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhc---------------
Q psy450 275 I----GQS--EENIRNVFLKARS--AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMD--------------- 331 (478)
Q Consensus 275 ~----g~~--~~~~~~~~~~a~~--~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~--------------- 331 (478)
. |.. ...+..+...|.. ..|++|+|||+++.... ++...++..++
T Consensus 246 rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~------------kiFGel~~lLE~~~rg~~~~v~l~y~ 313 (459)
T PRK11331 246 RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS------------KVFGEVMMLMEHDKRGENWSVPLTYS 313 (459)
T ss_pred CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH------------Hhhhhhhhhccccccccccceeeecc
Confidence 1 110 1123344555554 35799999999987632 22222222222
Q ss_pred -----CCCCCCCeEEEEEcCCCC----CCCccccCCCCCCeEEEeC
Q psy450 332 -----GVHTSQDVFILGATNRVD----LLDPAILRPGRLDKSLYVG 368 (478)
Q Consensus 332 -----~~~~~~~v~vI~ttn~~~----~ld~~l~~~~Rf~~~i~~~ 368 (478)
.+....++.||||.|..+ .+|.+++| ||. .+.+.
T Consensus 314 e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~ 356 (459)
T PRK11331 314 ENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIE 356 (459)
T ss_pred ccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEec
Confidence 233456899999999987 69999999 994 45554
No 189
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.18 E-value=2.6e-09 Score=101.70 Aligned_cols=69 Identities=26% Similarity=0.477 Sum_probs=50.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC--CcEEEEechhh
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR--MNFLAVKGPEL 270 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~--~~~~~v~~~~l 270 (478)
.+...-+.++|+.++.+..--++..... .....+++|+.||||||||.+|-++|+++| .||..++++++
T Consensus 33 ~~k~~~dG~VGQ~~AReAaGvIv~mik~-gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEi 103 (450)
T COG1224 33 KAKFIGDGLVGQEEAREAAGVIVKMIKQ-GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEI 103 (450)
T ss_pred CEeEcCCcccchHHHHHhhhHHHHHHHh-CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeecccee
Confidence 3555667899999988765444333322 123388999999999999999999999996 57777666554
No 190
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.17 E-value=4e-10 Score=119.46 Aligned_cols=56 Identities=27% Similarity=0.374 Sum_probs=47.3
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN 261 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~ 261 (478)
...+|..-|++++|+++++..+...+.. +.+++|+||||||||++++++++.++..
T Consensus 9 ~~~~~~~~~~~viG~~~a~~~l~~a~~~--------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 9 EIPVPERLIDQVIGQEEAVEIIKKAAKQ--------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred ccCcchhhHhhccCHHHHHHHHHHHHHc--------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 4457888899999999999988876653 2479999999999999999999988654
No 191
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4.3e-10 Score=105.45 Aligned_cols=124 Identities=27% Similarity=0.456 Sum_probs=87.6
Q ss_pred cccCcHHHHHHHHHHHHhhhhh---------CCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh-hhhcc
Q psy450 208 DIGGLSKLKAEILSTFRGVNRT---------SGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN-KYIGQ 277 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~~~~---------~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~-~~~g~ 277 (478)
-++|++..|+.|.-.+..-..+ -.....+|||.||+|||||.||+.+|+.++.||-.-++..+.. .|+|+
T Consensus 62 YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGE 141 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGE 141 (408)
T ss_pred heecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccch
Confidence 4688888888775443322111 1122568999999999999999999999999999999888864 48888
Q ss_pred hHHHHH-HHHHHh----HhCCCeEEEEcCCccccCCCCCCC---CCchhHHHHHHHHHHhhcCC
Q psy450 278 SEENIR-NVFLKA----RSAAPCVVFFDELDSLAPRRGQED---QSSGVMDRVVSQLLAEMDGV 333 (478)
Q Consensus 278 ~~~~~~-~~~~~a----~~~~p~il~iDeid~l~~~~~~~~---~~~~~~~~~~~~ll~~l~~~ 333 (478)
...++- .+++.| .+....||||||||+++.+....+ +.++ ..+...||+.++|.
T Consensus 142 DVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSG--EGVQQALLKiiEGT 203 (408)
T COG1219 142 DVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSG--EGVQQALLKIIEGT 203 (408)
T ss_pred hHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCc--hHHHHHHHHHHcCc
Confidence 776644 444433 223346999999999997653322 2233 46788899988874
No 192
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.17 E-value=3.9e-11 Score=120.56 Aligned_cols=157 Identities=25% Similarity=0.365 Sum_probs=104.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh----
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK---- 273 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~---- 273 (478)
....+|++|+|.+....++.+........ +..||+.|.+||||..+|++|.+.. +.||+.+||+.+-..
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~A~t----dstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlES 314 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRIAKT----DSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLES 314 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhhcCC----CCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHH
Confidence 45678999999999988888777665432 5679999999999999999998766 569999999665322
Q ss_pred -hhc--------chHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCC-----CC----
Q psy450 274 -YIG--------QSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGV-----HT---- 335 (478)
Q Consensus 274 -~~g--------~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----~~---- 335 (478)
.+| .....-...|+.|.. ..||+|||..+. ..+...||..++.- ..
T Consensus 315 ELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgemp-------------l~LQaKLLRVLQEkei~rvG~t~~~ 378 (560)
T COG3829 315 ELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMP-------------LPLQAKLLRVLQEKEIERVGGTKPI 378 (560)
T ss_pred HHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCC-------------HHHHHHHHHHHhhceEEecCCCCce
Confidence 122 222112334544443 389999999886 34556666655421 11
Q ss_pred CCCeEEEEEcCCCCCCCccccCCCCCCeEEEe-------CCCCCHHHHHHHH
Q psy450 336 SQDVFILGATNRVDLLDPAILRPGRLDKSLYV-------GLYEDRISQLGVL 380 (478)
Q Consensus 336 ~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~-------~~pp~~~~r~~il 380 (478)
.-+|.||++||+. +..++. .|+|-.-+|+ .+||-++...+|.
T Consensus 379 ~vDVRIIAATN~n--L~~~i~-~G~FReDLYYRLNV~~i~iPPLReR~eDI~ 427 (560)
T COG3829 379 PVDVRIIAATNRN--LEKMIA-EGTFREDLYYRLNVIPITIPPLRERKEDIP 427 (560)
T ss_pred eeEEEEEeccCcC--HHHHHh-cCcchhhheeeeceeeecCCCcccCcchHH
Confidence 2259999999974 222332 3566554444 4477776655554
No 193
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.16 E-value=6.4e-11 Score=102.16 Aligned_cols=110 Identities=25% Similarity=0.417 Sum_probs=69.4
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhh--hhcchHHH------HHHHHHHhHhCCCeEEEEcCCccccC
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK--YIGQSEEN------IRNVFLKARSAAPCVVFFDELDSLAP 307 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~--~~g~~~~~------~~~~~~~a~~~~p~il~iDeid~l~~ 307 (478)
+++|+||||||||++++.+|+.++.+++.+++...... ..|...-. ....+..+. ..+++++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCC-
Confidence 48999999999999999999999999999887543211 11110000 000011111 145799999999875
Q ss_pred CCCCCCCCchhHHHHHHHHHHhhcCCCC-----------CC------CeEEEEEcCCCC----CCCccccCCCCC
Q psy450 308 RRGQEDQSSGVMDRVVSQLLAEMDGVHT-----------SQ------DVFILGATNRVD----LLDPAILRPGRL 361 (478)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~-----------~~------~v~vI~ttn~~~----~ld~~l~~~~Rf 361 (478)
..++..|+..++.-.. .. ++.+|+|+|... .+++++++ ||
T Consensus 79 ------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 ------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 3455555555543110 11 389999999988 79999999 87
No 194
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.16 E-value=4.2e-10 Score=111.76 Aligned_cols=196 Identities=23% Similarity=0.310 Sum_probs=124.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh----
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK---- 273 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~---- 273 (478)
.+.....+|+|.+....++.+.+...... ...|||.|.+||||..+|++|-+.. ..||+.+||+.+-..
T Consensus 217 ~~~~~~~~iIG~S~am~~ll~~i~~VA~S----d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlES 292 (550)
T COG3604 217 EVVLEVGGIIGRSPAMRQLLKEIEVVAKS----DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLES 292 (550)
T ss_pred chhcccccceecCHHHHHHHHHHHHHhcC----CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHH
Confidence 34667889999999999999888877543 5569999999999999999998766 569999999766422
Q ss_pred -hhcchHHHHHH-------HHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhc-----CCCCCC---
Q psy450 274 -YIGQSEENIRN-------VFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMD-----GVHTSQ--- 337 (478)
Q Consensus 274 -~~g~~~~~~~~-------~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~-----~~~~~~--- 337 (478)
.+|........ -|+.| ..+.||+|||..+.. .+...|+..++ .+..+.
T Consensus 293 ELFGHeKGAFTGA~~~r~GrFElA---dGGTLFLDEIGelPL-------------~lQaKLLRvLQegEieRvG~~r~ik 356 (550)
T COG3604 293 ELFGHEKGAFTGAINTRRGRFELA---DGGTLFLDEIGELPL-------------ALQAKLLRVLQEGEIERVGGDRTIK 356 (550)
T ss_pred HHhcccccccccchhccCcceeec---CCCeEechhhccCCH-------------HHHHHHHHHHhhcceeecCCCceeE
Confidence 23322222111 12222 235999999988863 34444554443 222222
Q ss_pred -CeEEEEEcCCCCCCCccccCCCCCCeEEEeC-------CCCCHHHHHHHH---HHHHhc----CCCC-CCCC---HHHH
Q psy450 338 -DVFILGATNRVDLLDPAILRPGRLDKSLYVG-------LYEDRISQLGVL---KAVVRK----FKLS-DDVS---LDSL 398 (478)
Q Consensus 338 -~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~-------~pp~~~~r~~il---~~~~~~----~~~~-~~~~---~~~l 398 (478)
+|-||++||+ +|...++. |+|-.-+|+. +||-++...+|. ++++++ .+.. ...+ ++.+
T Consensus 357 VDVRiIAATNR--DL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L 433 (550)
T COG3604 357 VDVRVIAATNR--DLEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELL 433 (550)
T ss_pred EEEEEEeccch--hHHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHH
Confidence 5889999998 33344443 5665444433 377776665554 444433 2221 1111 3333
Q ss_pred HHhcCCCCCH--HHHHHHHHHHHHHH
Q psy450 399 VHHFPSQMSG--ADIYSICSNAWTRA 422 (478)
Q Consensus 399 a~~~~~~~sg--~di~~l~~~a~~~a 422 (478)
.. + +|.| +++++++.+|+..|
T Consensus 434 ~~-y--~wPGNVRELen~veRavlla 456 (550)
T COG3604 434 SS-Y--EWPGNVRELENVVERAVLLA 456 (550)
T ss_pred Hc-C--CCCCcHHHHHHHHHHHHHHh
Confidence 33 2 3544 89999999999877
No 195
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.16 E-value=5e-10 Score=110.90 Aligned_cols=144 Identities=24% Similarity=0.291 Sum_probs=98.9
Q ss_pred cccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC------------------------CcEE
Q psy450 208 DIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR------------------------MNFL 263 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~------------------------~~~~ 263 (478)
++.|.+.+...+........ .-+..+||+||||+|||++|.++|+.+. ..++
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 45666666666655444221 1244699999999999999999999886 4677
Q ss_pred EEechhhhhhhhcchHHHHHHHHHHhHh----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCe
Q psy450 264 AVKGPELLNKYIGQSEENIRNVFLKARS----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDV 339 (478)
Q Consensus 264 ~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v 339 (478)
.++.++.... ......++.+.+.... ...-|++|||+|.+.. ...+.++..++. ...+.
T Consensus 78 el~~s~~~~~--~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~-------------~A~nallk~lEe--p~~~~ 140 (325)
T COG0470 78 ELNPSDLRKI--DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE-------------DAANALLKTLEE--PPKNT 140 (325)
T ss_pred EecccccCCC--cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH-------------HHHHHHHHHhcc--CCCCe
Confidence 7776654321 1134445555444422 3457999999999973 567888888874 45678
Q ss_pred EEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHH
Q psy450 340 FILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQ 376 (478)
Q Consensus 340 ~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r 376 (478)
.+|.+||.++.+-+.+++ |+ ..+.|+. +.....
T Consensus 141 ~~il~~n~~~~il~tI~S--Rc-~~i~f~~-~~~~~~ 173 (325)
T COG0470 141 RFILITNDPSKILPTIRS--RC-QRIRFKP-PSRLEA 173 (325)
T ss_pred EEEEEcCChhhccchhhh--cc-eeeecCC-chHHHH
Confidence 888899999999999999 88 4566653 344443
No 196
>CHL00181 cbbX CbbX; Provisional
Probab=99.15 E-value=1.2e-09 Score=105.67 Aligned_cols=133 Identities=12% Similarity=0.161 Sum_probs=95.6
Q ss_pred HHHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccc--------hhhHhhhccccccccccccchhhhccCCC
Q psy450 17 SHLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNV--------KYVYFKLCSFDSVNVKSNETKDQQCKQQH 88 (478)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~--------r~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 88 (478)
+.+++.|++++.. +.+.+|+ .| .++||||||+|.+++. ..++.++..|+. ..+
T Consensus 100 ~~l~~~~~g~~~~-~~~~~l~-~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~--------------~~~ 160 (287)
T CHL00181 100 DDLVGQYIGHTAP-KTKEVLK-KA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMEN--------------QRD 160 (287)
T ss_pred HHHHHHHhccchH-HHHHHHH-Hc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhc--------------CCC
Confidence 4567778887654 5677776 54 4689999999998533 366777777873 234
Q ss_pred cEEEEe------------eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChh--HHHHHHHh--cCCCC-H
Q psy450 89 KKKLVL------------IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDAS--LVEYLSSV--TSGFE-R 151 (478)
Q Consensus 89 ~v~via------------ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~--~i~~la~~--t~G~s-~ 151 (478)
.++||+ ++|+++|||+.+|+|+.|+.+++.+|++.++.+.+..+..+.. +.+.+.+. .+.|. +
T Consensus 161 ~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNa 240 (287)
T CHL00181 161 DLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANA 240 (287)
T ss_pred CEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccH
Confidence 455555 4799999999999999999999999999999876444443321 11223322 24566 8
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy450 152 HDLTCLVRLSVKNKMLK 168 (478)
Q Consensus 152 ~di~~l~~~a~~~a~~~ 168 (478)
.+++++++.+..+...+
T Consensus 241 R~vrn~ve~~~~~~~~r 257 (287)
T CHL00181 241 RSVRNALDRARMRQANR 257 (287)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999887654
No 197
>KOG0991|consensus
Probab=99.14 E-value=3.1e-10 Score=101.83 Aligned_cols=161 Identities=21% Similarity=0.204 Sum_probs=98.6
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh-C----CcEEEEechhhhhhh
Q psy450 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC-R----MNFLAVKGPELLNKY 274 (478)
Q Consensus 200 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~-~----~~~~~v~~~~l~~~~ 274 (478)
.+.+..+.||+|.++..+.|.-+...-. ..++++.||||||||+.+.++|+++ | ..+++++.++-.+-
T Consensus 20 KYrP~~l~dIVGNe~tv~rl~via~~gn------mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGI- 92 (333)
T KOG0991|consen 20 KYRPSVLQDIVGNEDTVERLSVIAKEGN------MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGI- 92 (333)
T ss_pred hhCchHHHHhhCCHHHHHHHHHHHHcCC------CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccccc-
Confidence 3445568899999999998876543221 4579999999999999999999987 3 23556665543211
Q ss_pred hcchHHHHHHHHHHhHh----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC
Q psy450 275 IGQSEENIRNVFLKARS----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDL 350 (478)
Q Consensus 275 ~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 350 (478)
....+--+.|.+-+- +...|+++||+|++.. .....+-..|+-.... ..+..++|..+.
T Consensus 93 --DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~-------------gAQQAlRRtMEiyS~t--tRFalaCN~s~K 155 (333)
T KOG0991|consen 93 --DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA-------------GAQQALRRTMEIYSNT--TRFALACNQSEK 155 (333)
T ss_pred --HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh-------------HHHHHHHHHHHHHccc--chhhhhhcchhh
Confidence 122222334444332 2335999999999972 1223333334322232 235667788888
Q ss_pred CCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCC
Q psy450 351 LDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFK 388 (478)
Q Consensus 351 ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~ 388 (478)
+=+.+.+ |+...-+-.+ +..+.+.-+....+..+
T Consensus 156 IiEPIQS--RCAiLRyskl--sd~qiL~Rl~~v~k~Ek 189 (333)
T KOG0991|consen 156 IIEPIQS--RCAILRYSKL--SDQQILKRLLEVAKAEK 189 (333)
T ss_pred hhhhHHh--hhHhhhhccc--CHHHHHHHHHHHHHHhC
Confidence 8888888 8865555554 44444444444444333
No 198
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.14 E-value=2.6e-09 Score=101.39 Aligned_cols=215 Identities=16% Similarity=0.158 Sum_probs=124.4
Q ss_pred cCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---------CCcEEEEechhh------hhh-
Q psy450 210 GGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---------RMNFLAVKGPEL------LNK- 273 (478)
Q Consensus 210 ~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---------~~~~~~v~~~~l------~~~- 273 (478)
+|+...++.|..+-.........+..++||+|++|.|||++++.+.... ..|++.+.++.- ...
T Consensus 37 IgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 37 IGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred ecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 6666666655544333332233336789999999999999999998754 246777765321 110
Q ss_pred -------h-h-cchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCC--eEEE
Q psy450 274 -------Y-I-GQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQD--VFIL 342 (478)
Q Consensus 274 -------~-~-g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~--v~vI 342 (478)
+ . ....+....+..-.+..++-+|+|||++.+...+ ...++.+-.+++.+. +.-+ ++.+
T Consensus 117 L~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs-------~~~qr~~Ln~LK~L~---NeL~ipiV~v 186 (302)
T PF05621_consen 117 LEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS-------YRKQREFLNALKFLG---NELQIPIVGV 186 (302)
T ss_pred HHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc-------HHHHHHHHHHHHHHh---hccCCCeEEe
Confidence 1 0 1112222334445566777799999999976321 111233333333332 2233 4444
Q ss_pred EEcCCCC--CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCC--CCCHHHHHH---hcCCCCCHHHHHHHH
Q psy450 343 GATNRVD--LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSD--DVSLDSLVH---HFPSQMSGADIYSIC 415 (478)
Q Consensus 343 ~ttn~~~--~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~--~~~~~~la~---~~~~~~sg~di~~l~ 415 (478)
||-.-.. .-|+.+.+ ||+.. .++.-...++...++..+-+.+++.. ...-.+++. ..++|.+| ++..++
T Consensus 187 Gt~~A~~al~~D~QLa~--RF~~~-~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll 262 (302)
T PF05621_consen 187 GTREAYRALRTDPQLAS--RFEPF-ELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLL 262 (302)
T ss_pred ccHHHHHHhccCHHHHh--ccCCc-cCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHH
Confidence 4332212 23667777 99643 34442233455667777766665432 222223332 23478887 899999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 416 SNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 416 ~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
+.|+..|++.. ...||.+.+...
T Consensus 263 ~~aA~~AI~sG----------~E~It~~~l~~~ 285 (302)
T PF05621_consen 263 NAAAIAAIRSG----------EERITREILDKI 285 (302)
T ss_pred HHHHHHHHhcC----------CceecHHHHhhC
Confidence 99999999875 567899888876
No 199
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.13 E-value=1.9e-10 Score=102.30 Aligned_cols=111 Identities=23% Similarity=0.342 Sum_probs=72.7
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCC----cEEEEechhhhhhhhcchHHHHHHHHHHh----HhCCCeEEEEcCCccc
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRM----NFLAVKGPELLNKYIGQSEENIRNVFLKA----RSAAPCVVFFDELDSL 305 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~----~~~~v~~~~l~~~~~g~~~~~~~~~~~~a----~~~~p~il~iDeid~l 305 (478)
-.+++|.||+|||||.+|+++|+.+.. +++.++++++... +.....+...+..+ ......||+|||||+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 346899999999999999999999996 9999999988651 11111112222111 1111139999999999
Q ss_pred cCCCCCCCCCchhHHHHHHHHHHhhcCCC---------CCCCeEEEEEcCCC
Q psy450 306 APRRGQEDQSSGVMDRVVSQLLAEMDGVH---------TSQDVFILGATNRV 348 (478)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~vI~ttn~~ 348 (478)
.+..+.. .......+++.|+..+++-. +..++++|+|+|--
T Consensus 81 ~~~~~~~--~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 81 HPSNSGG--ADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp SHTTTTC--SHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ccccccc--chhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 9752222 22223467788888776421 13468999999864
No 200
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.13 E-value=8.1e-10 Score=111.25 Aligned_cols=195 Identities=21% Similarity=0.291 Sum_probs=119.8
Q ss_pred CCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh-----hh
Q psy450 204 VSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK-----YI 275 (478)
Q Consensus 204 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~-----~~ 275 (478)
....+++|.+...+++.+.+...... ..+||++|++||||..+|++|.... +.||+.+||..+-.. .+
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s----~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELF 213 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPS----DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELF 213 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCC----CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhh
Confidence 45678999999999999988877543 5569999999999999999998766 569999999765322 22
Q ss_pred cchHHH-------HHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC-----CCC----CCCe
Q psy450 276 GQSEEN-------IRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG-----VHT----SQDV 339 (478)
Q Consensus 276 g~~~~~-------~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~----~~~v 339 (478)
|..... -...|+.|. ...||||||..+. ..+...|+..++. +.. .-++
T Consensus 214 GhekGAFTGA~~~r~G~fE~A~---GGTLfLDEI~~mp-------------l~~Q~kLLRvLqe~~~~rvG~~~~i~vdv 277 (464)
T COG2204 214 GHEKGAFTGAITRRIGRFEQAN---GGTLFLDEIGEMP-------------LELQVKLLRVLQEREFERVGGNKPIKVDV 277 (464)
T ss_pred cccccCcCCcccccCcceeEcC---CceEEeeccccCC-------------HHHHHHHHHHHHcCeeEecCCCcccceee
Confidence 222111 112344443 3499999999987 3455666665542 111 2258
Q ss_pred EEEEEcCCCCCCCccccCCCCCCe-------EEEeCCCCCHHHHHHHH---HHHHhc----CCC-CCCCCHHHHHHhcCC
Q psy450 340 FILGATNRVDLLDPAILRPGRLDK-------SLYVGLYEDRISQLGVL---KAVVRK----FKL-SDDVSLDSLVHHFPS 404 (478)
Q Consensus 340 ~vI~ttn~~~~ld~~l~~~~Rf~~-------~i~~~~pp~~~~r~~il---~~~~~~----~~~-~~~~~~~~la~~~~~ 404 (478)
-||++||.. |...+. .|+|-. ++.+.+||-++.+.+|. .+++++ .+. ....+-+.+.....-
T Consensus 278 RiIaaT~~d--L~~~v~-~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y 354 (464)
T COG2204 278 RIIAATNRD--LEEEVA-AGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAY 354 (464)
T ss_pred EEEeecCcC--HHHHHH-cCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 899999974 222222 245443 44555588887777665 444432 211 123334444433323
Q ss_pred CCCH--HHHHHHHHHHHHH
Q psy450 405 QMSG--ADIYSICSNAWTR 421 (478)
Q Consensus 405 ~~sg--~di~~l~~~a~~~ 421 (478)
.+.| +++++++.+++..
T Consensus 355 ~WPGNVREL~N~ver~~il 373 (464)
T COG2204 355 DWPGNVRELENVVERAVIL 373 (464)
T ss_pred CCChHHHHHHHHHHHHHhc
Confidence 3433 5666666655543
No 201
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=1e-09 Score=107.18 Aligned_cols=155 Identities=17% Similarity=0.162 Sum_probs=108.0
Q ss_pred CcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc------------------EEEEe
Q psy450 205 SWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------FLAVK 266 (478)
Q Consensus 205 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------~~~v~ 266 (478)
.|++++|++.+++.|...+.. +.-+.++||+||+|+||+++|.++|+.+-+. ++.+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~ 76 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVE 76 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEe
Confidence 488999999999999987753 3337789999999999999999999887321 12222
Q ss_pred chhhh-hh--------hhc--------chHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHH
Q psy450 267 GPELL-NK--------YIG--------QSEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQ 325 (478)
Q Consensus 267 ~~~l~-~~--------~~g--------~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ 325 (478)
+.... ++ ..| -....++++.+.+. .....|++||++|.+. ....+.
T Consensus 77 p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~-------------~~aaNa 143 (314)
T PRK07399 77 PTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN-------------EAAANA 143 (314)
T ss_pred ccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-------------HHHHHH
Confidence 11000 00 000 01124555544443 2345799999999996 456789
Q ss_pred HHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHH
Q psy450 326 LLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVV 384 (478)
Q Consensus 326 ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~ 384 (478)
|++.++... +.++|.+|+.++.+-+.+++ |+ ..+.|+. ++.++..++++...
T Consensus 144 LLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~-l~~~~~~~~L~~~~ 195 (314)
T PRK07399 144 LLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYR-LSDEQLEQVLKRLG 195 (314)
T ss_pred HHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCC-CCHHHHHHHHHHhh
Confidence 999998653 44667778899999999999 98 5777765 67888877877653
No 202
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.12 E-value=5.3e-10 Score=95.70 Aligned_cols=125 Identities=28% Similarity=0.426 Sum_probs=80.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCc---EEEEechhhhhh--------------hhcchHHHHHHHHHHhHhCCCeE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMN---FLAVKGPELLNK--------------YIGQSEENIRNVFLKARSAAPCV 296 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~---~~~v~~~~l~~~--------------~~g~~~~~~~~~~~~a~~~~p~i 296 (478)
+.+++|+||||||||++++.++..+... ++++++...... ............+..+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999999775 788877543321 12334556677888888777899
Q ss_pred EEEcCCccccCCCCCCCCCchhHHHHHHHH--HHhhcCCCCCCCeEEEEEcCC-CCCCCccccCCCCCCeEEEeCC
Q psy450 297 VFFDELDSLAPRRGQEDQSSGVMDRVVSQL--LAEMDGVHTSQDVFILGATNR-VDLLDPAILRPGRLDKSLYVGL 369 (478)
Q Consensus 297 l~iDeid~l~~~~~~~~~~~~~~~~~~~~l--l~~l~~~~~~~~v~vI~ttn~-~~~ld~~l~~~~Rf~~~i~~~~ 369 (478)
|++||++.+..... ....... ...........+..+|+++|. ....+..+.. |++..+.+..
T Consensus 82 iiiDei~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~ 146 (148)
T smart00382 82 LILDEITSLLDAEQ---------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLL 146 (148)
T ss_pred EEEECCcccCCHHH---------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecC
Confidence 99999999974321 0000000 000011122445778888886 3334445555 8888887754
No 203
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=6.7e-10 Score=109.75 Aligned_cols=148 Identities=17% Similarity=0.165 Sum_probs=104.1
Q ss_pred CcccccC-cHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc----------------------
Q psy450 205 SWEDIGG-LSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN---------------------- 261 (478)
Q Consensus 205 ~~~~i~g-~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~---------------------- 261 (478)
.|+.|.| ++.+++.|...+. .+..++.+||+||+|+||+++|+++++.+-+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~-----~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~h 77 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA-----KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNH 77 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH-----cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCC
Confidence 4788888 8889998887764 23447788999999999999999999887331
Q ss_pred --EEEEechhhhhhhhcchHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC
Q psy450 262 --FLAVKGPELLNKYIGQSEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT 335 (478)
Q Consensus 262 --~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 335 (478)
+..+... +. .-.-..++++.+.+. ....-|++|||+|.+. ....+.|++.++. +
T Consensus 78 pD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~-------------~~a~NaLLK~LEE--P 137 (329)
T PRK08058 78 PDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT-------------ASAANSLLKFLEE--P 137 (329)
T ss_pred CCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC-------------HHHHHHHHHHhcC--C
Confidence 2222111 00 012234555554443 2334699999999986 4567899999995 4
Q ss_pred CCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHH
Q psy450 336 SQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLK 381 (478)
Q Consensus 336 ~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~ 381 (478)
..++++|.+|+.++.+.+.+++ |+ ..+++.. ++.++...+++
T Consensus 138 p~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~-~~~~~~~~~L~ 179 (329)
T PRK08058 138 SGGTTAILLTENKHQILPTILS--RC-QVVEFRP-LPPESLIQRLQ 179 (329)
T ss_pred CCCceEEEEeCChHhCcHHHHh--hc-eeeeCCC-CCHHHHHHHHH
Confidence 4567777788889999999999 88 5667765 56766655554
No 204
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=9.7e-10 Score=107.98 Aligned_cols=131 Identities=20% Similarity=0.262 Sum_probs=94.4
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHHhCCc------------------------EEEEechhhhhhhhcchHHHHHHHH
Q psy450 231 GLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------------FLAVKGPELLNKYIGQSEENIRNVF 286 (478)
Q Consensus 231 ~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------------~~~v~~~~l~~~~~g~~~~~~~~~~ 286 (478)
|..++.+||+||+|+|||++|+++|+.+.+. ++.+...+- + ..-.-..++++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHH
Confidence 4458889999999999999999999988542 222221100 0 011334566665
Q ss_pred HHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCC
Q psy450 287 LKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLD 362 (478)
Q Consensus 287 ~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~ 362 (478)
+.+. .+...|++||++|.+. ....+.|++.++. +..++++|.+|+.++.+.|.+++ |+.
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m~-------------~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~ 158 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMN-------------RNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQ 158 (328)
T ss_pred HHHhhccccCCCeEEEECChhhCC-------------HHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hce
Confidence 5553 2345699999999997 4678999999996 44678888999999999999999 995
Q ss_pred eEEEeCCCCCHHHHHHHHHHH
Q psy450 363 KSLYVGLYEDRISQLGVLKAV 383 (478)
Q Consensus 363 ~~i~~~~pp~~~~r~~il~~~ 383 (478)
. +.|+. |+.++-..+++..
T Consensus 159 ~-~~~~~-~~~~~~~~~L~~~ 177 (328)
T PRK05707 159 Q-QACPL-PSNEESLQWLQQA 177 (328)
T ss_pred e-eeCCC-cCHHHHHHHHHHh
Confidence 4 77775 6777776677643
No 205
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.09 E-value=1.7e-10 Score=103.95 Aligned_cols=46 Identities=37% Similarity=0.590 Sum_probs=36.5
Q ss_pred CcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh
Q psy450 205 SWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 205 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.|.+|.|++.+|..|.-.... ..|+|++||||||||++|+.+...+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 378999999999988765442 4689999999999999999999866
No 206
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.08 E-value=1.7e-09 Score=106.72 Aligned_cols=191 Identities=18% Similarity=0.213 Sum_probs=110.7
Q ss_pred cccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh-----hhcc
Q psy450 206 WEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK-----YIGQ 277 (478)
Q Consensus 206 ~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~-----~~g~ 277 (478)
+++++|.+...+.+.+.+...... ..+|||+|++||||+++|+++.... +.+|+.++|..+... .+|.
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~----~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~ 80 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPL----DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGH 80 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCC----CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccc
Confidence 567889888888888877766533 4569999999999999999997655 468999999865321 1121
Q ss_pred hHH-------HHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC--C-------CCCeEE
Q psy450 278 SEE-------NIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH--T-------SQDVFI 341 (478)
Q Consensus 278 ~~~-------~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~-------~~~v~v 341 (478)
... .....+..+ ....|||||++.|.. .....|+..++.-. . ..++.|
T Consensus 81 ~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~~-------------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~Ri 144 (326)
T PRK11608 81 EAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM-------------LVQEKLLRVIEYGELERVGGSQPLQVNVRL 144 (326)
T ss_pred cccccCCcccccCCchhcc---CCCeEEeCChhhCCH-------------HHHHHHHHHHhcCcEEeCCCCceeeccEEE
Confidence 100 011223333 235999999999973 34455555554211 0 125788
Q ss_pred EEEcCCC-------CCCCccccCCCCCC-eEEEeCCCCCHHHHHHH---HHHHHh----cCCCC--CCCCHHHHHHhcCC
Q psy450 342 LGATNRV-------DLLDPAILRPGRLD-KSLYVGLYEDRISQLGV---LKAVVR----KFKLS--DDVSLDSLVHHFPS 404 (478)
Q Consensus 342 I~ttn~~-------~~ld~~l~~~~Rf~-~~i~~~~pp~~~~r~~i---l~~~~~----~~~~~--~~~~~~~la~~~~~ 404 (478)
|++|+.. ..+.+.|.. ||. ..|.+ ||-++.+.+| +..++. +.+.. ..++-+.+.....-
T Consensus 145 I~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~l--PpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y 220 (326)
T PRK11608 145 VCATNADLPAMVAEGKFRADLLD--RLAFDVVQL--PPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNY 220 (326)
T ss_pred EEeCchhHHHHHHcCCchHHHHH--hcCCCEEEC--CChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhC
Confidence 8888764 234455555 663 34444 5555554443 344432 22211 12222222221112
Q ss_pred CCCH--HHHHHHHHHHHH
Q psy450 405 QMSG--ADIYSICSNAWT 420 (478)
Q Consensus 405 ~~sg--~di~~l~~~a~~ 420 (478)
.+.| ++++++++.|+.
T Consensus 221 ~WPGNvrEL~~vl~~a~~ 238 (326)
T PRK11608 221 RWPGNIRELKNVVERSVY 238 (326)
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 3433 677777777664
No 207
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.07 E-value=4.3e-09 Score=102.85 Aligned_cols=62 Identities=18% Similarity=0.304 Sum_probs=51.5
Q ss_pred cc-cccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCC-------cEEEEec
Q psy450 206 WE-DIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRM-------NFLAVKG 267 (478)
Q Consensus 206 ~~-~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~-------~~~~v~~ 267 (478)
|+ ++.|+++++.++.+.+.......+...+.++|+||||||||++|+++++.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 45 89999999999998888776544444677899999999999999999999965 7777655
No 208
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.07 E-value=2.1e-09 Score=106.02 Aligned_cols=149 Identities=23% Similarity=0.249 Sum_probs=89.2
Q ss_pred ccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh-----hhcchHH
Q psy450 209 IGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK-----YIGQSEE 280 (478)
Q Consensus 209 i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~-----~~g~~~~ 280 (478)
++|.+...+.+.+.+...... ..+|||+|++||||+++|++|.... +.+|+.++|..+... .+|....
T Consensus 1 liG~S~~m~~~~~~~~~~a~~----~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g 76 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL----DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAG 76 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC----CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccc
Confidence 356666666666666555432 4569999999999999999997655 469999999765321 1111100
Q ss_pred -------HHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC---------CCCCeEEEEE
Q psy450 281 -------NIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH---------TSQDVFILGA 344 (478)
Q Consensus 281 -------~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~vI~t 344 (478)
.....|..+. .++|||||++.|.. .....|+..++.-. ...++.+|++
T Consensus 77 ~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~a 140 (329)
T TIGR02974 77 AFTGAQKRHQGRFERAD---GGTLFLDELATASL-------------LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCA 140 (329)
T ss_pred cccCcccccCCchhhCC---CCEEEeCChHhCCH-------------HHHHHHHHHHHcCcEEecCCCceeccceEEEEe
Confidence 0112233332 45999999999973 44555555554311 1235788988
Q ss_pred cCCC-------CCCCccccCCCCCCeEEEeCCCCCHHHHHHHH
Q psy450 345 TNRV-------DLLDPAILRPGRLDKSLYVGLYEDRISQLGVL 380 (478)
Q Consensus 345 tn~~-------~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il 380 (478)
|+.. ..+.+.|.. |+. .+.+.+||-++.+.+|.
T Consensus 141 t~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~ 180 (329)
T TIGR02974 141 TNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIM 180 (329)
T ss_pred chhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHH
Confidence 8864 123344554 553 23455566665444443
No 209
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.07 E-value=2.3e-09 Score=112.36 Aligned_cols=155 Identities=23% Similarity=0.333 Sum_probs=97.1
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh-----
Q psy450 202 PNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK----- 273 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~----- 273 (478)
...+|++++|.+...+.+.+.+...... ...+||+|++||||+++|+++.... +.+|+.++|+.+...
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~----~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~e 274 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAML----DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESE 274 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCC----CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHH
Confidence 4568999999998888777766654332 4459999999999999999986654 468999999776321
Q ss_pred hhcchH-------HHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCC--CC-------CC
Q psy450 274 YIGQSE-------ENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGV--HT-------SQ 337 (478)
Q Consensus 274 ~~g~~~-------~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~~-------~~ 337 (478)
..|... .....+|..+. .+.|||||++.|.+ .....|+..++.- .. ..
T Consensus 275 lFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 338 (520)
T PRK10820 275 LFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSP-------------RMQAKLLRFLNDGTFRRVGEDHEVHV 338 (520)
T ss_pred hcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCH-------------HHHHHHHHHHhcCCcccCCCCcceee
Confidence 112110 01112344433 35899999999973 3444555554331 11 12
Q ss_pred CeEEEEEcCCCC-------CCCccccCCCCCCeEEEeCCCCCHHHHHHH
Q psy450 338 DVFILGATNRVD-------LLDPAILRPGRLDKSLYVGLYEDRISQLGV 379 (478)
Q Consensus 338 ~v~vI~ttn~~~-------~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~i 379 (478)
++.||++|+.+- .+.+.|.. |+.. +.+.+||-++.+.+|
T Consensus 339 ~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~-~~i~lPpLreR~~Di 384 (520)
T PRK10820 339 DVRVICATQKNLVELVQKGEFREDLYY--RLNV-LTLNLPPLRDRPQDI 384 (520)
T ss_pred eeEEEEecCCCHHHHHHcCCccHHHHh--hcCe-eEEeCCCcccChhHH
Confidence 577888887642 23444554 6543 556666666555444
No 210
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.06 E-value=7.2e-09 Score=112.70 Aligned_cols=193 Identities=21% Similarity=0.259 Sum_probs=114.5
Q ss_pred CCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh-----hh
Q psy450 204 VSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK-----YI 275 (478)
Q Consensus 204 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~-----~~ 275 (478)
..+++++|.+...+.+.+.+...... ..+|||+|++|||||++|++|.... +.+|+.++|..+... ..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~----~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lf 448 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQS----DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLF 448 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCC----CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhc
Confidence 45788999999998888777765432 4569999999999999999998755 569999999765321 12
Q ss_pred cchH-------HHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC---------CCCCe
Q psy450 276 GQSE-------ENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH---------TSQDV 339 (478)
Q Consensus 276 g~~~-------~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v 339 (478)
|... ......+..+. .++|||||++.+.. .....|+..++... ...++
T Consensus 449 g~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L~~-------------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 512 (686)
T PRK15429 449 GHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDMPL-------------ELQPKLLRVLQEQEFERLGSNKIIQTDV 512 (686)
T ss_pred CcccccccccccchhhHHHhcC---CCeEEEechhhCCH-------------HHHHHHHHHHHhCCEEeCCCCCcccceE
Confidence 2110 11122343332 35999999999973 34555555554211 12357
Q ss_pred EEEEEcCCCC-------CCCccccCCCCCCeEEEeCCCCCHHHHHHH---HHHHHhcC----CCCC-CCC---HHHHHHh
Q psy450 340 FILGATNRVD-------LLDPAILRPGRLDKSLYVGLYEDRISQLGV---LKAVVRKF----KLSD-DVS---LDSLVHH 401 (478)
Q Consensus 340 ~vI~ttn~~~-------~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~i---l~~~~~~~----~~~~-~~~---~~~la~~ 401 (478)
.+|++|+..- .+.+.+.. |+. .+.+.+||-++.+.+| ++.++.+. +... ... +..|..+
T Consensus 513 RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y 589 (686)
T PRK15429 513 RLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNM 589 (686)
T ss_pred EEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence 8899988642 12222222 332 3455666776655554 34444322 2111 122 3333322
Q ss_pred cCCCC--CHHHHHHHHHHHHHHH
Q psy450 402 FPSQM--SGADIYSICSNAWTRA 422 (478)
Q Consensus 402 ~~~~~--sg~di~~l~~~a~~~a 422 (478)
.+ +-++++++++.|+..+
T Consensus 590 ---~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 590 ---EWPGNVRELENVIERAVLLT 609 (686)
T ss_pred ---CCCCcHHHHHHHHHHHHHhC
Confidence 23 3478888888877543
No 211
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.06 E-value=2.3e-09 Score=112.11 Aligned_cols=160 Identities=24% Similarity=0.265 Sum_probs=97.5
Q ss_pred cccCcHHHHHHHHHHHHhhhh---hCCCC---CceEEEeCCCCChHHHHHHHHHHHhCCcEEEE----echhhhhhhhcc
Q psy450 208 DIGGLSKLKAEILSTFRGVNR---TSGLK---RSGLLLYGPPGTGKTLIAKAVATECRMNFLAV----KGPELLNKYIGQ 277 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~~~---~~~~~---~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v----~~~~l~~~~~g~ 277 (478)
.+.|++.+|..+.-.+..-.. ..|.. ..++||+|+||||||++|+++++......+.. ++..+.......
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~ 283 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRD 283 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEc
Confidence 468888887776544432110 11111 34799999999999999999999875443221 111121110000
Q ss_pred h--HH-HH-HHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC-----------CCCCeEEE
Q psy450 278 S--EE-NI-RNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH-----------TSQDVFIL 342 (478)
Q Consensus 278 ~--~~-~~-~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~vI 342 (478)
. .. .+ ...+. .....+++|||++.+.+ .....|+..|+.-. .+.++.||
T Consensus 284 ~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l~~-------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~vi 347 (509)
T smart00350 284 PETREFTLEGGALV---LADNGVCCIDEFDKMDD-------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVL 347 (509)
T ss_pred cCcceEEecCccEE---ecCCCEEEEechhhCCH-------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEE
Confidence 0 00 00 00111 12235999999999873 33445555554211 13468899
Q ss_pred EEcCCCC-------------CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHh
Q psy450 343 GATNRVD-------------LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVR 385 (478)
Q Consensus 343 ~ttn~~~-------------~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~ 385 (478)
+|+|..+ .+++++++ |||..+.+..+|+.+...+|.+..+.
T Consensus 348 Aa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 348 AAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 9999652 58999999 99988777666899888888887653
No 212
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.06 E-value=1.6e-08 Score=97.36 Aligned_cols=187 Identities=13% Similarity=0.182 Sum_probs=106.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCC-cEE--EE-ec----hhhhhh---hhcc-----hH-H---HHHHHH-HHhHhC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRM-NFL--AV-KG----PELLNK---YIGQ-----SE-E---NIRNVF-LKARSA 292 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~-~~~--~v-~~----~~l~~~---~~g~-----~~-~---~~~~~~-~~a~~~ 292 (478)
+..++|+||+|+|||++++.+++.+.. .+. .+ ++ .++... ..|. .. . .+...+ ......
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 335889999999999999999998752 222 11 11 111111 1111 11 1 122222 223356
Q ss_pred CCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC---CC----ccccCCCCCCeEE
Q psy450 293 APCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDL---LD----PAILRPGRLDKSL 365 (478)
Q Consensus 293 ~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~---ld----~~l~~~~Rf~~~i 365 (478)
.+.+++|||++.+... ....+..+..... .....+.|+.+ ..|+. +. ..+.+ |+...+
T Consensus 123 ~~~vliiDe~~~l~~~----------~~~~l~~l~~~~~--~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~~~ 187 (269)
T TIGR03015 123 KRALLVVDEAQNLTPE----------LLEELRMLSNFQT--DNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIASC 187 (269)
T ss_pred CCeEEEEECcccCCHH----------HHHHHHHHhCccc--CCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heeeee
Confidence 6789999999988521 0112222221111 11222333333 33321 11 23445 777777
Q ss_pred EeCCCCCHHHHHHHHHHHHhcCCCC-----CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccc
Q psy450 366 YVGLYEDRISQLGVLKAVVRKFKLS-----DDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIV 440 (478)
Q Consensus 366 ~~~~pp~~~~r~~il~~~~~~~~~~-----~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~i 440 (478)
.++. .+.++..+++...++..+.. .+..+..+++.+ .|... .|..+|..+...|..+. ...|
T Consensus 188 ~l~~-l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s-~G~p~-~i~~l~~~~~~~a~~~~----------~~~i 254 (269)
T TIGR03015 188 HLGP-LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFS-RGIPR-LINILCDRLLLSAFLEE----------KREI 254 (269)
T ss_pred eCCC-CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHc-CCccc-HHHHHHHHHHHHHHHcC----------CCCC
Confidence 8875 78888888888877654321 112355666665 77765 59999999988887753 4479
Q ss_pred cHHHHHhc
Q psy450 441 TMDDFLGA 448 (478)
Q Consensus 441 t~~d~~~A 448 (478)
|.+++..+
T Consensus 255 ~~~~v~~~ 262 (269)
T TIGR03015 255 GGEEVREV 262 (269)
T ss_pred CHHHHHHH
Confidence 99999999
No 213
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.05 E-value=2.1e-09 Score=112.65 Aligned_cols=196 Identities=20% Similarity=0.193 Sum_probs=115.3
Q ss_pred CcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh-----hhc
Q psy450 205 SWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK-----YIG 276 (478)
Q Consensus 205 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~-----~~g 276 (478)
...+++|.+...+.+.+.+...... +.+|||+|++||||+++|++|.... +.+|+.++|..+... .+|
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~----~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG 260 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAAS----DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFG 260 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCC----CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcC
Confidence 4678899999988888887775433 5569999999999999999998775 569999999876321 112
Q ss_pred chHH-------HHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC---------CCCCeE
Q psy450 277 QSEE-------NIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH---------TSQDVF 340 (478)
Q Consensus 277 ~~~~-------~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~ 340 (478)
.... .....|..+ ..+.|||||++.|.. .....|+..++.-. ...++.
T Consensus 261 ~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 324 (509)
T PRK05022 261 HVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPL-------------ALQAKLLRVLQYGEIQRVGSDRSLRVDVR 324 (509)
T ss_pred ccccccCCCcccCCcchhhc---CCCEEEecChhhCCH-------------HHHHHHHHHHhcCCEeeCCCCcceecceE
Confidence 1100 001123333 235899999999973 34555555554311 112578
Q ss_pred EEEEcCCCC-------CCCccccCCCCCCeEEEeCCCCCHHHHHHHH---HHHHhcC----CC-CCCCCHHHHHHhcCCC
Q psy450 341 ILGATNRVD-------LLDPAILRPGRLDKSLYVGLYEDRISQLGVL---KAVVRKF----KL-SDDVSLDSLVHHFPSQ 405 (478)
Q Consensus 341 vI~ttn~~~-------~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il---~~~~~~~----~~-~~~~~~~~la~~~~~~ 405 (478)
+|++|+..- .+.+.|.. |+. .+.+.+||-++.+.+|. +.++++. +. ....+-+.+.....-.
T Consensus 325 iI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~ 401 (509)
T PRK05022 325 VIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYD 401 (509)
T ss_pred EEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC
Confidence 899988742 23333333 432 34455566666555443 3444322 11 1122222222211112
Q ss_pred C--CHHHHHHHHHHHHHHHH
Q psy450 406 M--SGADIYSICSNAWTRAI 423 (478)
Q Consensus 406 ~--sg~di~~l~~~a~~~a~ 423 (478)
+ +-+++++++..|+..+.
T Consensus 402 WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 402 WPGNVRELEHVISRAALLAR 421 (509)
T ss_pred CCCcHHHHHHHHHHHHHhcC
Confidence 3 44788888888876554
No 214
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.04 E-value=6.1e-09 Score=110.09 Aligned_cols=128 Identities=29% Similarity=0.365 Sum_probs=85.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhh---
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKY--- 274 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~--- 274 (478)
.+..+++.++|.+...+.+.+.+...... ..+|||+|++||||+++|++|.... +.+|+.++|..+....
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~~----~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~ 265 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVARS----NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLES 265 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhCc----CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHH
Confidence 44567899999999999888877766532 4569999999999999999998875 5699999997663211
Q ss_pred --hcchHHH-------HHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC-----C----C
Q psy450 275 --IGQSEEN-------IRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH-----T----S 336 (478)
Q Consensus 275 --~g~~~~~-------~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~----~ 336 (478)
+|..... ....+..+ ...+|||||++.|.. .....|+..++.-. . .
T Consensus 266 ~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~-------------~~Q~~Ll~~l~~~~~~~~~~~~~~~ 329 (534)
T TIGR01817 266 ELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISP-------------AFQAKLLRVLQEGEFERVGGNRTLK 329 (534)
T ss_pred HHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCH-------------HHHHHHHHHHhcCcEEECCCCceEe
Confidence 1111000 00112222 346999999999973 34555655554311 0 1
Q ss_pred CCeEEEEEcCCC
Q psy450 337 QDVFILGATNRV 348 (478)
Q Consensus 337 ~~v~vI~ttn~~ 348 (478)
.++.+|++|+..
T Consensus 330 ~~~riI~~s~~~ 341 (534)
T TIGR01817 330 VDVRLVAATNRD 341 (534)
T ss_pred ecEEEEEeCCCC
Confidence 247888888764
No 215
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.03 E-value=2.3e-09 Score=108.43 Aligned_cols=152 Identities=18% Similarity=0.237 Sum_probs=87.4
Q ss_pred cccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCC--cEEEEech-hhhhhhhcch-HHHH-
Q psy450 208 DIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRM--NFLAVKGP-ELLNKYIGQS-EENI- 282 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~--~~~~v~~~-~l~~~~~g~~-~~~~- 282 (478)
.++|.+++++.+...+.. ..++||.||||||||++|++++...+. +|..+.+. .......|.. -...
T Consensus 21 ~i~gre~vI~lll~aala--------g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~ 92 (498)
T PRK13531 21 GLYERSHAIRLCLLAALS--------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALK 92 (498)
T ss_pred hccCcHHHHHHHHHHHcc--------CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhh
Confidence 357777777766654321 557999999999999999999997753 34433322 0111222221 0110
Q ss_pred -HHHHHHhHhC---CCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC--------CCCCeEEEEEcCCCCC
Q psy450 283 -RNVFLKARSA---APCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH--------TSQDVFILGATNRVDL 350 (478)
Q Consensus 283 -~~~~~~a~~~---~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~v~vI~ttn~~~~ 350 (478)
...|.....+ ...++|+|||..+. ....+.|+..|+.-. .-+..+++++||....
T Consensus 93 ~~g~f~r~~~G~L~~A~lLfLDEI~ras-------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE 159 (498)
T PRK13531 93 DEGRYQRLTSGYLPEAEIVFLDEIWKAG-------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPE 159 (498)
T ss_pred hcCchhhhcCCccccccEEeecccccCC-------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcc
Confidence 1122221111 22499999998775 356777777773211 1112345555564321
Q ss_pred ---CCccccCCCCCCeEEEeCCCCCHHHHHHHHHH
Q psy450 351 ---LDPAILRPGRLDKSLYVGLYEDRISQLGVLKA 382 (478)
Q Consensus 351 ---ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~ 382 (478)
..+++.. ||-..+.+++|.+.++..+++..
T Consensus 160 ~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 160 ADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTS 192 (498)
T ss_pred cCCchHHhHh--hEEEEEECCCCCchHHHHHHHHc
Confidence 2247888 99778888764345665667755
No 216
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.03 E-value=2.8e-09 Score=112.87 Aligned_cols=133 Identities=19% Similarity=0.253 Sum_probs=91.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCC--cEEEEechhhhhhhhcchH--HHHH--------HHHHHhHhCCCeEEEEcC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRM--NFLAVKGPELLNKYIGQSE--ENIR--------NVFLKARSAAPCVVFFDE 301 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~--~~~~v~~~~l~~~~~g~~~--~~~~--------~~~~~a~~~~p~il~iDe 301 (478)
-.++||.|+||||||++|+++++.++. +|+.+..........|... ..+. ..+.. ....+||+||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~---A~~GvL~lDE 92 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDE---APRGVLYVDM 92 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeee---CCCCcEeccc
Confidence 347999999999999999999998754 5887764222222223210 0000 01111 2235999999
Q ss_pred CccccCCCCCCCCCchhHHHHHHHHHHhhcCCC-----------CCCCeEEEEEcCCCC---CCCccccCCCCCCeEEEe
Q psy450 302 LDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH-----------TSQDVFILGATNRVD---LLDPAILRPGRLDKSLYV 367 (478)
Q Consensus 302 id~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~vI~ttn~~~---~ld~~l~~~~Rf~~~i~~ 367 (478)
++.+. ..+.+.|+..|+.-. ...++.||+|+|..+ .+++++.. ||...+.+
T Consensus 93 i~rl~-------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~ 157 (589)
T TIGR02031 93 ANLLD-------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSL 157 (589)
T ss_pred hhhCC-------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeec
Confidence 99997 345667777665321 123688999988765 68889999 99998888
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy450 368 GLYEDRISQLGVLKAVV 384 (478)
Q Consensus 368 ~~pp~~~~r~~il~~~~ 384 (478)
..++..++|.+|++..+
T Consensus 158 ~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 158 EDVASQDLRVEIVRRER 174 (589)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 87778888888887765
No 217
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.03 E-value=8e-11 Score=97.28 Aligned_cols=111 Identities=28% Similarity=0.411 Sum_probs=57.5
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEech-hhh-hhhhcchHHHHH-HHHHHhH-hCCCeEEEEcCCccccCCCCC
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVKGP-ELL-NKYIGQSEENIR-NVFLKAR-SAAPCVVFFDELDSLAPRRGQ 311 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~-~l~-~~~~g~~~~~~~-~~~~~a~-~~~p~il~iDeid~l~~~~~~ 311 (478)
|+||+|+||+|||++|+++|+.++..|..+.+. ++. +...|..--... ..|.-.. ..-..|+++||+.+..+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrapp---- 76 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPP---- 76 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-H----
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCH----
Confidence 689999999999999999999999999988763 232 222221000000 0000000 00014999999988764
Q ss_pred CCCCchhHHHHHHHHHHhhcCC---------CCCCCeEEEEEcCCCC-----CCCccccCCCCC
Q psy450 312 EDQSSGVMDRVVSQLLAEMDGV---------HTSQDVFILGATNRVD-----LLDPAILRPGRL 361 (478)
Q Consensus 312 ~~~~~~~~~~~~~~ll~~l~~~---------~~~~~v~vI~ttn~~~-----~ld~~l~~~~Rf 361 (478)
++.+.++..|..- .-..+++||+|-|..+ .|+++++. ||
T Consensus 77 ---------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 77 ---------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ---------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ---------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 4556666665431 1245689999999765 46777776 66
No 218
>PRK04132 replication factor C small subunit; Provisional
Probab=99.02 E-value=6.3e-09 Score=112.56 Aligned_cols=142 Identities=20% Similarity=0.163 Sum_probs=103.5
Q ss_pred eEEEeC--CCCChHHHHHHHHHHHh-----CCcEEEEechhhhhhhhcchHHHHHHHHHHhHhC------CCeEEEEcCC
Q psy450 236 GLLLYG--PPGTGKTLIAKAVATEC-----RMNFLAVKGPELLNKYIGQSEENIRNVFLKARSA------APCVVFFDEL 302 (478)
Q Consensus 236 ~iLl~G--p~GtGKT~la~~la~~~-----~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~------~p~il~iDei 302 (478)
+-+..| |++.||||+|+++|+++ +.+++.+|+++.. ....++++...+... ...|++|||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 346678 99999999999999998 5679999998742 223455555443321 2369999999
Q ss_pred ccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHH
Q psy450 303 DSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKA 382 (478)
Q Consensus 303 d~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~ 382 (478)
|.+. ....+.|+..|+. ...++.+|++||.++.+.+++++ |+ ..+.|+. ++.++....++.
T Consensus 640 D~Lt-------------~~AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~-ls~~~i~~~L~~ 700 (846)
T PRK04132 640 DALT-------------QDAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRP-LRDEDIAKRLRY 700 (846)
T ss_pred ccCC-------------HHHHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCC-CCHHHHHHHHHH
Confidence 9997 3457888888885 34578899999999999999999 98 5667775 677777777877
Q ss_pred HHhcCCCC-CCCCHHHHHHhc
Q psy450 383 VVRKFKLS-DDVSLDSLVHHF 402 (478)
Q Consensus 383 ~~~~~~~~-~~~~~~~la~~~ 402 (478)
.+++.++. ++..+..++..+
T Consensus 701 I~~~Egi~i~~e~L~~Ia~~s 721 (846)
T PRK04132 701 IAENEGLELTEEGLQAILYIA 721 (846)
T ss_pred HHHhcCCCCCHHHHHHHHHHc
Confidence 77654443 223366666654
No 219
>KOG1514|consensus
Probab=99.01 E-value=1.5e-08 Score=104.48 Aligned_cols=204 Identities=21% Similarity=0.293 Sum_probs=131.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh----------CCcEEEEechhhhh----------hhhcchH------HHHHHHHH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC----------RMNFLAVKGPELLN----------KYIGQSE------ENIRNVFL 287 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~----------~~~~~~v~~~~l~~----------~~~g~~~------~~~~~~~~ 287 (478)
...+++.|-||||||.+++.+-+++ ...++.+|+-.+.+ .+.|+.. ..+..-|.
T Consensus 422 g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~ 501 (767)
T KOG1514|consen 422 GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFT 501 (767)
T ss_pred ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhc
Confidence 3468899999999999999998866 34677777643322 1222221 12223333
Q ss_pred Hh-HhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccC---CCCCC-
Q psy450 288 KA-RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILR---PGRLD- 362 (478)
Q Consensus 288 ~a-~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~---~~Rf~- 362 (478)
.. ....++||+|||+|.|..+. +.+++.++.+-. ..+.+++||+.+|..+. ++.++- .+|++
T Consensus 502 ~~k~~~~~~VvLiDElD~Lvtr~----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdl-PEr~l~nrvsSRlg~ 568 (767)
T KOG1514|consen 502 VPKPKRSTTVVLIDELDILVTRS----------QDVLYNIFDWPT--LKNSKLVVIAIANTMDL-PERLLMNRVSSRLGL 568 (767)
T ss_pred cCCCCCCCEEEEeccHHHHhccc----------HHHHHHHhcCCc--CCCCceEEEEecccccC-HHHHhccchhhhccc
Confidence 11 23457999999999999654 567888877654 35678999999998654 333321 23665
Q ss_pred eEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHH--HHHHHHHHHHHHHHHHHHhcCCCCCCCCccc
Q psy450 363 KSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGA--DIYSICSNAWTRAIRRIITSAPQVKSAPVIV 440 (478)
Q Consensus 363 ~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~--di~~l~~~a~~~a~~r~~~~~~~~~~~~~~i 440 (478)
..+.|. |.+..+...|+...++....-.. +..+++.+--+..||. --..+|++|...|-.+.... .......|
T Consensus 569 tRi~F~-pYth~qLq~Ii~~RL~~~~~f~~-~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~---k~~~~q~v 643 (767)
T KOG1514|consen 569 TRICFQ-PYTHEQLQEIISARLKGLDAFEN-KAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKG---KLAVSQLV 643 (767)
T ss_pred eeeecC-CCCHHHHHHHHHHhhcchhhcch-hHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccc---ccccccee
Confidence 456666 47999999999999988743222 2444444332556662 22366888887777776411 12234568
Q ss_pred cHHHHHhchhccCCCcccccc
Q psy450 441 TMDDFLGACSLATAPDKFSQS 461 (478)
Q Consensus 441 t~~d~~~A~~~~~~l~~~~ps 461 (478)
++.|+.+| +..+..+
T Consensus 644 ~~~~v~~A------i~em~~~ 658 (767)
T KOG1514|consen 644 GILHVMEA------INEMLAS 658 (767)
T ss_pred ehHHHHHH------HHHHhhh
Confidence 99999999 7666544
No 220
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.01 E-value=1.2e-08 Score=98.79 Aligned_cols=68 Identities=26% Similarity=0.441 Sum_probs=47.7
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC--CcEEEEechhh
Q psy450 202 PNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR--MNFLAVKGPEL 270 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~--~~~~~v~~~~l 270 (478)
+....+.++|+.++++..--.+..... .....+++||.||||||||.+|-++|+++| .||..++++++
T Consensus 19 ~~~~~~GlVGQ~~AReAagiiv~mIk~-~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 19 ARYIADGLVGQEKAREAAGIIVDMIKE-GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp B-SEETTEES-HHHHHHHHHHHHHHHT-T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred EeeccccccChHHHHHHHHHHHHHHhc-ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 444567899999999887655554432 222378899999999999999999999996 67777776655
No 221
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.00 E-value=1.6e-09 Score=107.15 Aligned_cols=200 Identities=20% Similarity=0.233 Sum_probs=118.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHH----hCCcEEEEechhhhhhhh-
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATE----CRMNFLAVKGPELLNKYI- 275 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~----~~~~~~~v~~~~l~~~~~- 275 (478)
.....+++++|.+...+.+.+.+.... ....++|++|++||||+.+|+.|... ...||+.+||+.+.....
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~~a----p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~ 147 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKAYA----PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQE 147 (403)
T ss_pred ccchhhhhhhccCHHHHHHHHHHHhhC----CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHH
Confidence 345568899998888887777666521 11556999999999999999999643 356999999987753321
Q ss_pred ----cc-------hHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC-----CCC----
Q psy450 276 ----GQ-------SEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG-----VHT---- 335 (478)
Q Consensus 276 ----g~-------~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~---- 335 (478)
|. ....-..+|+.|.. .+||+|||+.+.+ .....++..++. +..
T Consensus 148 ~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~LP~-------------~~Q~kLl~~le~g~~~rvG~~~~~ 211 (403)
T COG1221 148 AELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRLPP-------------EGQEKLLRVLEEGEYRRVGGSQPR 211 (403)
T ss_pred HHHhccccceeecccCCcCchheecCC---CEEehhhhhhCCH-------------hHHHHHHHHHHcCceEecCCCCCc
Confidence 11 11122234554433 4999999999974 334455555553 111
Q ss_pred CCCeEEEEEcCCC--CCCCc--cccCCCCCCeEEEeCCCCCHHHHHHHH---HHHH----hcCCCCCCCCH----HHHHH
Q psy450 336 SQDVFILGATNRV--DLLDP--AILRPGRLDKSLYVGLYEDRISQLGVL---KAVV----RKFKLSDDVSL----DSLVH 400 (478)
Q Consensus 336 ~~~v~vI~ttn~~--~~ld~--~l~~~~Rf~~~i~~~~pp~~~~r~~il---~~~~----~~~~~~~~~~~----~~la~ 400 (478)
..+|.+|++|+.. +.+-. .+.+ -++...|. +||-++.+.+|. ++++ ++.+....... ..+..
T Consensus 212 ~~dVRli~AT~~~l~~~~~~g~dl~~-rl~~~~I~--LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~ 288 (403)
T COG1221 212 PVDVRLICATTEDLEEAVLAGADLTR-RLNILTIT--LPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLA 288 (403)
T ss_pred CCCceeeeccccCHHHHHHhhcchhh-hhcCceec--CCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 2358888888753 11111 2222 04434444 456665555554 3333 34443333222 22333
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHH
Q psy450 401 HFPSQMSGADIYSICSNAWTRAIR 424 (478)
Q Consensus 401 ~~~~~~sg~di~~l~~~a~~~a~~ 424 (478)
+.-.| +-+++.+++..++..+..
T Consensus 289 y~~pG-NirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 289 YDWPG-NIRELKNLVERAVAQASG 311 (403)
T ss_pred CCCCC-cHHHHHHHHHHHHHHhcc
Confidence 22123 336899999998877643
No 222
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.00 E-value=2.9e-09 Score=110.71 Aligned_cols=160 Identities=23% Similarity=0.301 Sum_probs=100.6
Q ss_pred CCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHH-----------hCCcEEEEechhhhh
Q psy450 204 VSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATE-----------CRMNFLAVKGPELLN 272 (478)
Q Consensus 204 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~-----------~~~~~~~v~~~~l~~ 272 (478)
..+++++|.+...+.+.+.+...... ..+|||+|++||||+++|++|.+. .+.||+.++|..+..
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s----~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e 291 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS----SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE 291 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC----CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh
Confidence 56889999999999888887765433 456999999999999999999876 356999999976532
Q ss_pred h-----hhcchHH--------HHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC-----
Q psy450 273 K-----YIGQSEE--------NIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH----- 334 (478)
Q Consensus 273 ~-----~~g~~~~--------~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----- 334 (478)
. ..|.... .-..+|+.|. ...|||||++.|.. .....|+..++.-.
T Consensus 292 ~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~-------------~~Q~kLl~~L~e~~~~r~G 355 (538)
T PRK15424 292 SLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPL-------------PLQTRLLRVLEEKEVTRVG 355 (538)
T ss_pred hhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCH-------------HHHHHHHhhhhcCeEEecC
Confidence 1 1221111 1112444443 34999999999973 44556666554311
Q ss_pred C----CCCeEEEEEcCCCCCCCccccCCCCCCe-------EEEeCCCCCHHHHHHH---HHHHHhc
Q psy450 335 T----SQDVFILGATNRVDLLDPAILRPGRLDK-------SLYVGLYEDRISQLGV---LKAVVRK 386 (478)
Q Consensus 335 ~----~~~v~vI~ttn~~~~ld~~l~~~~Rf~~-------~i~~~~pp~~~~r~~i---l~~~~~~ 386 (478)
. ..++.+|++||..- . .+...|+|.. .+.+.+||-++.+.+| .+.++++
T Consensus 356 ~~~~~~~dvRiIaat~~~L--~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~ 418 (538)
T PRK15424 356 GHQPVPVDVRVISATHCDL--E-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQ 418 (538)
T ss_pred CCceeccceEEEEecCCCH--H-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHH
Confidence 1 12467898888641 1 1112234432 3455567776655544 3555543
No 223
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.00 E-value=8.7e-10 Score=97.80 Aligned_cols=120 Identities=23% Similarity=0.400 Sum_probs=75.8
Q ss_pred ccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh-----hhcchH-
Q psy450 209 IGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK-----YIGQSE- 279 (478)
Q Consensus 209 i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~-----~~g~~~- 279 (478)
|+|.+...+.+.+.+...... +.+|||+|++||||+.+|++|.+.. +.||+.++|+.+... ..|...
T Consensus 1 liG~s~~m~~~~~~~~~~a~~----~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~ 76 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS----DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKG 76 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS----TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSS
T ss_pred CEeCCHHHHHHHHHHHHHhCC----CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccc
Confidence 466667777777666655433 5679999999999999999998865 468999999776432 222211
Q ss_pred ------HHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCC-----CC----CCCeEEEEE
Q psy450 280 ------ENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGV-----HT----SQDVFILGA 344 (478)
Q Consensus 280 ------~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----~~----~~~v~vI~t 344 (478)
.....+|..|..+ +||||||+.|.+ .+...|+..++.- .. ..++.||++
T Consensus 77 ~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~s 140 (168)
T PF00158_consen 77 AFTGARSDKKGLLEQANGG---TLFLDEIEDLPP-------------ELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAS 140 (168)
T ss_dssp SSTTTSSEBEHHHHHTTTS---EEEEETGGGS-H-------------HHHHHHHHHHHHSEEECCTSSSEEE--EEEEEE
T ss_pred cccccccccCCceeeccce---EEeecchhhhHH-------------HHHHHHHHHHhhchhccccccccccccceEEee
Confidence 1122566666555 999999999973 4555565555421 11 226889999
Q ss_pred cCCC
Q psy450 345 TNRV 348 (478)
Q Consensus 345 tn~~ 348 (478)
|+.+
T Consensus 141 t~~~ 144 (168)
T PF00158_consen 141 TSKD 144 (168)
T ss_dssp ESS-
T ss_pred cCcC
Confidence 9863
No 224
>KOG0742|consensus
Probab=99.00 E-value=1.5e-09 Score=104.76 Aligned_cols=116 Identities=13% Similarity=0.076 Sum_probs=89.0
Q ss_pred hhhhHHHHhhhhc-CCCeEEEecccccccch-----------hhHhhhccccccccccccchhhhccCCCcEEEEe----
Q psy450 31 HLNDIVKINLKKY-NLDIFKYDEVNYLCNVK-----------YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL---- 94 (478)
Q Consensus 31 ~~~~if~~~a~~~-~p~ilfiDe~d~i~~~r-----------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via---- 94 (478)
++..+|+ -|++. +--+|||||+|+++-.| .+|.||= .+|-.+++-|+|+|
T Consensus 430 kiH~lFD-WakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLf-------------RTGdqSrdivLvlAtNrp 495 (630)
T KOG0742|consen 430 KIHKLFD-WAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLF-------------RTGDQSRDIVLVLATNRP 495 (630)
T ss_pred HHHHHHH-HHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHH-------------HhcccccceEEEeccCCc
Confidence 5778998 77764 46789999999998877 2333220 13446677788888
Q ss_pred --eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcC---CC-------------------CC--CChhHHHHHHHhcCC
Q psy450 95 --IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLG---GD-------------------YG--FDASLVEYLSSVTSG 148 (478)
Q Consensus 95 --ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~---~~-------------------~~--~~~~~i~~la~~t~G 148 (478)
+|.|+.-|||..|+||+|..+||..+|..|+.++= .. +. .....+...|+.|+|
T Consensus 496 gdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeG 575 (630)
T KOG0742|consen 496 GDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEG 575 (630)
T ss_pred cchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccC
Confidence 99999999999999999999999999999997741 00 00 113445788999999
Q ss_pred CCHHHHHHHHHH
Q psy450 149 FERHDLTCLVRL 160 (478)
Q Consensus 149 ~s~~di~~l~~~ 160 (478)
|||.+|..++-.
T Consensus 576 fSGREiakLva~ 587 (630)
T KOG0742|consen 576 FSGREIAKLVAS 587 (630)
T ss_pred CcHHHHHHHHHH
Confidence 999999998753
No 225
>KOG2227|consensus
Probab=99.00 E-value=2.5e-08 Score=98.38 Aligned_cols=232 Identities=17% Similarity=0.146 Sum_probs=145.6
Q ss_pred ccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh----C-CcEEEEechhhhhh--------
Q psy450 207 EDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC----R-MNFLAVKGPELLNK-------- 273 (478)
Q Consensus 207 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~----~-~~~~~v~~~~l~~~-------- 273 (478)
..+.|-+..+..+++++...... ..++++++.|.||||||.+..-+-..+ . ...++++|..+...
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~--~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLEL--NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhc--ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 45788888888888887776532 227789999999999999988665443 2 24578888653211
Q ss_pred --h-----hcchHHHHHHHHHH-hHhC-CCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEE
Q psy450 274 --Y-----IGQSEENIRNVFLK-ARSA-APCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGA 344 (478)
Q Consensus 274 --~-----~g~~~~~~~~~~~~-a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~t 344 (478)
+ .+.+.......|.. .... .+-++++||+|.|..+. +.+++++..+-. ..+.++++||.
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~----------~~vLy~lFewp~--lp~sr~iLiGi 295 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS----------QTVLYTLFEWPK--LPNSRIILIGI 295 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc----------cceeeeehhccc--CCcceeeeeee
Confidence 1 11122222223322 2222 36799999999998432 345566554322 24567999999
Q ss_pred cCCCCCCCccccC----CCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCC--HHHHHHhcCCCCCHHHHHHH---H
Q psy450 345 TNRVDLLDPAILR----PGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVS--LDSLVHHFPSQMSGADIYSI---C 415 (478)
Q Consensus 345 tn~~~~ld~~l~~----~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~--~~~la~~~~~~~sg~di~~l---~ 415 (478)
+|..+.-|..|.+ .+--...+.|++ .+.++..+|++..+.........+ +.-.|+++ .+.|| |++.+ |
T Consensus 296 ANslDlTdR~LprL~~~~~~~P~~l~F~P-YTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKv-aa~SG-DlRkaLdv~ 372 (529)
T KOG2227|consen 296 ANSLDLTDRFLPRLNLDLTIKPKLLVFPP-YTKDQIVEILQQRLSEESTSIFLNAAIELCARKV-AAPSG-DLRKALDVC 372 (529)
T ss_pred hhhhhHHHHHhhhhhhccCCCCceeeecC-CCHHHHHHHHHHHHhcccccccchHHHHHHHHHh-ccCch-hHHHHHHHH
Confidence 9998765544432 223446778875 799999999999888776554433 55566776 67887 77754 5
Q ss_pred HHHHHHHHHHHHhcCCC------CCCCCccccHHHHHhchhccCCCcccccc
Q psy450 416 SNAWTRAIRRIITSAPQ------VKSAPVIVTMDDFLGACSLATAPDKFSQS 461 (478)
Q Consensus 416 ~~a~~~a~~r~~~~~~~------~~~~~~~it~~d~~~A~~~~~~l~~~~ps 461 (478)
+.|...+.........+ .......|-.+|+..+ +.++--+
T Consensus 373 R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~v------iSk~~~s 418 (529)
T KOG2227|consen 373 RRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAV------ISKVDGS 418 (529)
T ss_pred HHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHH------hhhhccC
Confidence 66665555444322111 1122245668899998 6665544
No 226
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.00 E-value=2.2e-09 Score=111.74 Aligned_cols=161 Identities=21% Similarity=0.294 Sum_probs=99.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh-----h
Q psy450 203 NVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK-----Y 274 (478)
Q Consensus 203 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~-----~ 274 (478)
...|++++|.+...+.+.+.+...... ..+|||+|++||||+++|++|.+.. +.||+.++|..+... .
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~----~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseL 283 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARS----DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAEL 283 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCC----CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHh
Confidence 367899999999998888877665433 4569999999999999999998654 569999999765321 1
Q ss_pred hcchHH--------HHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC-----C----CC
Q psy450 275 IGQSEE--------NIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH-----T----SQ 337 (478)
Q Consensus 275 ~g~~~~--------~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~----~~ 337 (478)
.|.... ....+|+.+. ...|||||++.|.. .....|+..++.-. . ..
T Consensus 284 FG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~-------------~~Q~~Ll~~L~~~~~~r~g~~~~~~~ 347 (526)
T TIGR02329 284 FGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMPL-------------PLQTRLLRVLEEREVVRVGGTEPVPV 347 (526)
T ss_pred cCCcccccccccccccccchhhcC---CceEEecChHhCCH-------------HHHHHHHHHHhcCcEEecCCCceeee
Confidence 121110 1122344433 34899999999973 44555655554311 1 12
Q ss_pred CeEEEEEcCCCC--C-----CCccccCCCCCCeEEEeCCCCCHHHHHHHH---HHHHhc
Q psy450 338 DVFILGATNRVD--L-----LDPAILRPGRLDKSLYVGLYEDRISQLGVL---KAVVRK 386 (478)
Q Consensus 338 ~v~vI~ttn~~~--~-----ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il---~~~~~~ 386 (478)
++.+|++|+..- . +.+.+.. |+. .+.+.+||-++.+.+|. ..+++.
T Consensus 348 dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~ 403 (526)
T TIGR02329 348 DVRVVAATHCALTTAVQQGRFRRDLFY--RLS-ILRIALPPLRERPGDILPLAAEYLVQ 403 (526)
T ss_pred cceEEeccCCCHHHHhhhcchhHHHHH--hcC-CcEEeCCCchhchhHHHHHHHHHHHH
Confidence 457888888642 1 1122222 332 24455566666555443 455543
No 227
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.99 E-value=9.5e-09 Score=99.36 Aligned_cols=130 Identities=13% Similarity=0.137 Sum_probs=95.3
Q ss_pred HHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccc--------hhhHhhhccccccccccccchhhhccCCCc
Q psy450 18 HLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNV--------KYVYFKLCSFDSVNVKSNETKDQQCKQQHK 89 (478)
Q Consensus 18 ~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~--------r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 89 (478)
.+++.|++++.. +++.+|+ .| .++||||||+|.+.+. ..++.++..|+. ....
T Consensus 100 ~l~~~~~g~~~~-~~~~~~~-~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~--------------~~~~ 160 (284)
T TIGR02880 100 DLVGQYIGHTAP-KTKEILK-RA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN--------------QRDD 160 (284)
T ss_pred HHhHhhcccchH-HHHHHHH-Hc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhc--------------CCCC
Confidence 456677777654 7788887 55 4699999999998532 256777877873 3345
Q ss_pred EEEEe------------eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhc------CC-CC
Q psy450 90 KKLVL------------IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVT------SG-FE 150 (478)
Q Consensus 90 v~via------------ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t------~G-~s 150 (478)
++||+ +||+++|||+..|+||.++.+++.+|++.++.+.+.. .+.+.++.+.... +. -+
T Consensus 161 ~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~--l~~~a~~~L~~~l~~~~~~~~~GN 238 (284)
T TIGR02880 161 LVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYR--FSAEAEEAFADYIALRRTQPHFAN 238 (284)
T ss_pred EEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccc--cCHHHHHHHHHHHHHhCCCCCCCh
Confidence 56655 5899999999999999999999999999999887433 3334435554431 22 34
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy450 151 RHDLTCLVRLSVKNKMLK 168 (478)
Q Consensus 151 ~~di~~l~~~a~~~a~~~ 168 (478)
+..+++++..+..+...+
T Consensus 239 ~R~lrn~ve~~~~~~~~r 256 (284)
T TIGR02880 239 ARSIRNAIDRARLRQANR 256 (284)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 889999999998877654
No 228
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.99 E-value=3.4e-09 Score=93.65 Aligned_cols=132 Identities=21% Similarity=0.314 Sum_probs=89.5
Q ss_pred CcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCC-----------------------cEEEEec
Q psy450 211 GLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRM-----------------------NFLAVKG 267 (478)
Q Consensus 211 g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~-----------------------~~~~v~~ 267 (478)
|++.+.+.|...+.. +..|..+||+||+|+||+++|.++|+.+-. .++.++.
T Consensus 1 gq~~~~~~L~~~~~~-----~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHC-----TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHc-----CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 677777777776542 333778999999999999999999997722 2333332
Q ss_pred hhhhhhhhcchHHHHHHHHHHhHh----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEE
Q psy450 268 PELLNKYIGQSEENIRNVFLKARS----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILG 343 (478)
Q Consensus 268 ~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ 343 (478)
.... ..-....++.+...... ...-|++||++|.+. ....+.|++.|+. +..++.+|.
T Consensus 76 ~~~~---~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~-------------~~a~NaLLK~LEe--pp~~~~fiL 137 (162)
T PF13177_consen 76 DKKK---KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT-------------EEAQNALLKTLEE--PPENTYFIL 137 (162)
T ss_dssp TTSS---SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS--------------HHHHHHHHHHHHS--TTTTEEEEE
T ss_pred cccc---chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh-------------HHHHHHHHHHhcC--CCCCEEEEE
Confidence 2110 01134566666665532 345699999999997 5678999999995 456788999
Q ss_pred EcCCCCCCCccccCCCCCCeEEEeC
Q psy450 344 ATNRVDLLDPAILRPGRLDKSLYVG 368 (478)
Q Consensus 344 ttn~~~~ld~~l~~~~Rf~~~i~~~ 368 (478)
+|+.++.+.+.+++ |+ ..+.++
T Consensus 138 ~t~~~~~il~TI~S--Rc-~~i~~~ 159 (162)
T PF13177_consen 138 ITNNPSKILPTIRS--RC-QVIRFR 159 (162)
T ss_dssp EES-GGGS-HHHHT--TS-EEEEE-
T ss_pred EECChHHChHHHHh--hc-eEEecC
Confidence 99999999999999 98 455553
No 229
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.99 E-value=1.2e-08 Score=105.38 Aligned_cols=140 Identities=24% Similarity=0.320 Sum_probs=85.3
Q ss_pred CCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCC-----------------------
Q psy450 204 VSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRM----------------------- 260 (478)
Q Consensus 204 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~----------------------- 260 (478)
..|+++.|++.+++.+.-.+. ...+++|.||||||||++++.++..+..
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~--------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~ 260 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA--------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRK 260 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc--------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhcccc
Confidence 378899999998776654331 1467999999999999999999875421
Q ss_pred -----cEEEEechhhhhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC-
Q psy450 261 -----NFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH- 334 (478)
Q Consensus 261 -----~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~- 334 (478)
||....++......+|.....-...+..| ...+|||||++.+. ..++..|...|+.-.
T Consensus 261 ~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~~-------------~~~~~~L~~~LE~~~v 324 (499)
T TIGR00368 261 QIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEFK-------------RSVLDALREPIEDGSI 324 (499)
T ss_pred ccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhCC-------------HHHHHHHHHHHHcCcE
Confidence 11111111000001111100011123332 23599999999876 345555655554311
Q ss_pred ----------CCCCeEEEEEcCCC------C-----------------CCCccccCCCCCCeEEEeCC
Q psy450 335 ----------TSQDVFILGATNRV------D-----------------LLDPAILRPGRLDKSLYVGL 369 (478)
Q Consensus 335 ----------~~~~v~vI~ttn~~------~-----------------~ld~~l~~~~Rf~~~i~~~~ 369 (478)
...++.+|+++|.- . .+..+++. |||..+.++.
T Consensus 325 ~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~ 390 (499)
T TIGR00368 325 SISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPL 390 (499)
T ss_pred EEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcC
Confidence 12468899999852 1 47778888 9999999985
No 230
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=7.3e-09 Score=101.83 Aligned_cols=133 Identities=22% Similarity=0.219 Sum_probs=93.5
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHHhCCcE-------------------------EEEechhhhh-------------
Q psy450 231 GLKRSGLLLYGPPGTGKTLIAKAVATECRMNF-------------------------LAVKGPELLN------------- 272 (478)
Q Consensus 231 ~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~-------------------------~~v~~~~l~~------------- 272 (478)
+..++++||+||+|+||+++|+.+|+.+.+.. ..+.......
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 43488999999999999999999999874421 1121110000
Q ss_pred -hhhc---------chHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCC
Q psy450 273 -KYIG---------QSEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQD 338 (478)
Q Consensus 273 -~~~g---------~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 338 (478)
.-.| -.-..++.+.+.+. .+...|++||++|.+. ....|.||+.+++ +..+
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~-------------~~AaNaLLKtLEE--Pp~~ 162 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN-------------VAAANALLKTLEE--PPPG 162 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC-------------HHHHHHHHHHhcC--CCcC
Confidence 0000 12245565555442 2334699999999997 4678999999994 5677
Q ss_pred eEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHH
Q psy450 339 VFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKA 382 (478)
Q Consensus 339 v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~ 382 (478)
+++|.+|++|+.+.|.++| |+ ..+.++. |+.++...+|..
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~-~~~~~~~~~L~~ 202 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTV-PAPEAAAAWLAA 202 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecC-CCHHHHHHHHHH
Confidence 8899999999999999999 99 5778875 677777777754
No 231
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.97 E-value=1.2e-08 Score=107.72 Aligned_cols=226 Identities=13% Similarity=0.120 Sum_probs=123.7
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEE-Eechh--------
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLA-VKGPE-------- 269 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~-v~~~~-------- 269 (478)
..+.+..+++++|+++..+.+..++...... ..+...++|+||||||||++++.+|+.++..+.. .+...
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~-~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~ 154 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKAQVLE-NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDH 154 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhcccc-cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccccccc
Confidence 3456778999999999999888877654321 1113448999999999999999999998765433 11110
Q ss_pred -----hhhh--hhcchHHHHHHHHHHhH----------hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHH-hhc
Q psy450 270 -----LLNK--YIGQSEENIRNVFLKAR----------SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLA-EMD 331 (478)
Q Consensus 270 -----l~~~--~~g~~~~~~~~~~~~a~----------~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~-~l~ 331 (478)
+... ........+..++..+. .....||+|||++.+.... ...+..++. ...
T Consensus 155 ~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~----------~~~lq~lLr~~~~ 224 (637)
T TIGR00602 155 KVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD----------TRALHEILRWKYV 224 (637)
T ss_pred ccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh----------HHHHHHHHHHHhh
Confidence 0000 00112233444555443 1345799999999876321 123444444 221
Q ss_pred CCCCCCCeEEEEEcC-CCC--------------CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCC--CCC--
Q psy450 332 GVHTSQDVFILGATN-RVD--------------LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKL--SDD-- 392 (478)
Q Consensus 332 ~~~~~~~v~vI~ttn-~~~--------------~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~--~~~-- 392 (478)
....+.+|++++ .|. .+.+++++..|. ..|.|.. .......+.|+..+..... ..+
T Consensus 225 ---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnP-ia~t~l~K~L~rIl~~E~~~~~~~~~ 299 (637)
T TIGR00602 225 ---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNP-IAPTIMKKFLNRIVTIEAKKNGEKIK 299 (637)
T ss_pred ---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCC-CCHHHHHHHHHHHHHhhhhccccccc
Confidence 123333444333 222 133677753344 3567764 6777766666666654321 111
Q ss_pred ----CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 393 ----VSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 393 ----~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
..+..++. .+++|++.++......+.+.. .-........++..|...+
T Consensus 300 ~p~~~~l~~I~~-----~s~GDiRsAIn~LQf~~~~~g---~~a~~~~~~~vs~~hv~~a 351 (637)
T TIGR00602 300 VPKKTSVELLCQ-----GCSGDIRSAINSLQFSSSKSG---SLPIKKRMSTKSDAHASKS 351 (637)
T ss_pred cCCHHHHHHHHH-----hCCChHHHHHHHHHHHHhcCC---ccccccccccccHHHhhhc
Confidence 12444444 345699887766554443220 0001122345666777777
No 232
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.96 E-value=1.8e-08 Score=108.89 Aligned_cols=126 Identities=21% Similarity=0.323 Sum_probs=82.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhh-----hh
Q psy450 203 NVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLN-----KY 274 (478)
Q Consensus 203 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~-----~~ 274 (478)
..+|++++|.+...+.+.+.+...... ..+|||+|++||||+++|+++.+.. +.+|+.++|..+.. ..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~~----~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~el 396 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKS----SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEF 396 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhCc----CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHh
Confidence 456889999988888887777665433 4459999999999999999998765 46999999976531 12
Q ss_pred hcch----HHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC-----C----CCCeEE
Q psy450 275 IGQS----EENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH-----T----SQDVFI 341 (478)
Q Consensus 275 ~g~~----~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~----~~~v~v 341 (478)
.|.. .......|..| ..++|||||++.|.. .....|+..++.-. . .-++.+
T Consensus 397 fg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~-------------~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~ri 460 (638)
T PRK11388 397 LGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSP-------------ELQSALLQVLKTGVITRLDSRRLIPVDVRV 460 (638)
T ss_pred cCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCH-------------HHHHHHHHHHhcCcEEeCCCCceEEeeEEE
Confidence 2211 00000122222 346999999999973 34455555554211 0 115778
Q ss_pred EEEcCCC
Q psy450 342 LGATNRV 348 (478)
Q Consensus 342 I~ttn~~ 348 (478)
|+||+..
T Consensus 461 I~~t~~~ 467 (638)
T PRK11388 461 IATTTAD 467 (638)
T ss_pred EEeccCC
Confidence 9888864
No 233
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.2e-08 Score=96.62 Aligned_cols=60 Identities=28% Similarity=0.416 Sum_probs=48.5
Q ss_pred cccCcHHHHHHHHHHHHhhhhh--------CCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEec
Q psy450 208 DIGGLSKLKAEILSTFRGVNRT--------SGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKG 267 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~~~~--------~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~ 267 (478)
.|+|++++|+.+.-++..-.++ ....|++||..||+|+|||.+||.+|+-.+.||+.+..
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEA 83 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEA 83 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEe
Confidence 4789999999887666554222 23348999999999999999999999999999988754
No 234
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=1.5e-08 Score=99.00 Aligned_cols=129 Identities=20% Similarity=0.307 Sum_probs=91.6
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHHhCCc------------------------EEEEechhhhhhhhcchHHHHHHHH
Q psy450 231 GLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------------FLAVKGPELLNKYIGQSEENIRNVF 286 (478)
Q Consensus 231 ~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------------~~~v~~~~l~~~~~g~~~~~~~~~~ 286 (478)
+..++++||+||+|+||+++|+.+|+.+-+. ++.+...+ ++ .-....++++.
T Consensus 21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~--~I~id~iR~l~ 96 (325)
T PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NK--DIGVDQVREIN 96 (325)
T ss_pred CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CC--CCCHHHHHHHH
Confidence 3447889999999999999999999987331 22222100 00 11344566655
Q ss_pred HHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCC
Q psy450 287 LKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLD 362 (478)
Q Consensus 287 ~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~ 362 (478)
+.+. .+..-|++||++|.+. ....+.|++.++. +..++++|.+|+.++.+.|.+++ |+
T Consensus 97 ~~~~~~~~~g~~KV~iI~~a~~m~-------------~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC- 158 (325)
T PRK06871 97 EKVSQHAQQGGNKVVYIQGAERLT-------------EAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC- 158 (325)
T ss_pred HHHhhccccCCceEEEEechhhhC-------------HHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-
Confidence 4443 2344699999999997 4678999999995 56678888899999999999999 98
Q ss_pred eEEEeCCCCCHHHHHHHHHH
Q psy450 363 KSLYVGLYEDRISQLGVLKA 382 (478)
Q Consensus 363 ~~i~~~~pp~~~~r~~il~~ 382 (478)
..+.++. |+.++....|..
T Consensus 159 ~~~~~~~-~~~~~~~~~L~~ 177 (325)
T PRK06871 159 QTWLIHP-PEEQQALDWLQA 177 (325)
T ss_pred eEEeCCC-CCHHHHHHHHHH
Confidence 4556764 567776666654
No 235
>KOG0744|consensus
Probab=98.93 E-value=4e-09 Score=99.18 Aligned_cols=153 Identities=17% Similarity=0.167 Sum_probs=116.6
Q ss_pred HHHHHhhccCccchhhhhHHHHhhhhc-----CCCeEEEecccccccch--------------hhHhhhccccccccccc
Q psy450 17 SHLLTNYFATPRYHHLNDIVKINLKKY-----NLDIFKYDEVNYLCNVK--------------YVYFKLCSFDSVNVKSN 77 (478)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~if~~~a~~~-----~p~ilfiDe~d~i~~~r--------------~~~~~l~~~d~~~~~~~ 77 (478)
++++|++|.+... .+..+|+ ...+. .-.-+.|||+++|+..| +||.+|++||.+
T Consensus 220 hsLFSKWFsESgK-lV~kmF~-kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl----- 292 (423)
T KOG0744|consen 220 HSLFSKWFSESGK-LVAKMFQ-KIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL----- 292 (423)
T ss_pred hHHHHHHHhhhhh-HHHHHHH-HHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh-----
Confidence 5789999999988 8999998 66542 22345689999999887 899999999976
Q ss_pred cchhhhccCCCcEEEEe-------eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhc---C----CCCC----CChh--
Q psy450 78 ETKDQQCKQQHKKKLVL-------IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCL---G----GDYG----FDAS-- 137 (478)
Q Consensus 78 ~~~~~~~~~~~~v~via-------ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~---~----~~~~----~~~~-- 137 (478)
...++|++++ +|-|+.-|-|.+.+++.|+...|.+|++..+..+ + .... ....
T Consensus 293 -------K~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~ 365 (423)
T KOG0744|consen 293 -------KRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQ 365 (423)
T ss_pred -------ccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhh
Confidence 5678899999 9999999999999999999999999999988663 0 0100 0011
Q ss_pred --HHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHh
Q psy450 138 --LVEYLSSV-TSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDL 188 (478)
Q Consensus 138 --~i~~la~~-t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~ 188 (478)
....+... +.|.||.-++.+---|..+.. ...+++..+|..++..-
T Consensus 366 ~~~~~~~~~~~~~gLSGRtlrkLP~Laha~y~-----~~~~v~~~~fl~al~ea 414 (423)
T KOG0744|consen 366 KALRNILIELSTVGLSGRTLRKLPLLAHAEYF-----RTFTVDLSNFLLALLEA 414 (423)
T ss_pred HhHHHHHHHHhhcCCccchHhhhhHHHHHhcc-----CCCccChHHHHHHHHHH
Confidence 11223333 589999999998776665544 45789999998887654
No 236
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.92 E-value=1.6e-08 Score=96.95 Aligned_cols=128 Identities=10% Similarity=0.099 Sum_probs=91.0
Q ss_pred HHHhhccCccchhhhhHHHHhhhhcCCCeEEEeccccccc-------chhhHhhhccccccccccccchhhhccCCCcEE
Q psy450 19 LLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCN-------VKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKK 91 (478)
Q Consensus 19 ~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~-------~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~ 91 (478)
+++.|++++.. +++.+|+ .|. ++||||||+|.|.. ...++.++..|+. ....++
T Consensus 85 l~~~~~g~~~~-~~~~~~~-~a~---~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~--------------~~~~~~ 145 (261)
T TIGR02881 85 LVGEYIGHTAQ-KTREVIK-KAL---GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMED--------------NRNEFV 145 (261)
T ss_pred hhhhhccchHH-HHHHHHH-hcc---CCEEEEechhhhccCCccchHHHHHHHHHHHHhc--------------cCCCEE
Confidence 56677777654 7888887 553 68999999999874 2256777777773 233344
Q ss_pred EEe------------eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHh---------cCCCC
Q psy450 92 LVL------------IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSV---------TSGFE 150 (478)
Q Consensus 92 via------------ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~---------t~G~s 150 (478)
+|. ++|++++||+..|+|+.++.+++.+|++.++...+.. .+.+.++.+++. ...-+
T Consensus 146 vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~--l~~~a~~~l~~~~~~~~~~~~~~~gn 223 (261)
T TIGR02881 146 LILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYK--LTEEAKWKLREHLYKVDQLSSREFSN 223 (261)
T ss_pred EEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCc--cCHHHHHHHHHHHHHHHhccCCCCch
Confidence 433 6899999999999999999999999999999876333 333333555432 12346
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy450 151 RHDLTCLVRLSVKNKML 167 (478)
Q Consensus 151 ~~di~~l~~~a~~~a~~ 167 (478)
+..+++++..|..+...
T Consensus 224 ~R~~~n~~e~a~~~~~~ 240 (261)
T TIGR02881 224 ARYVRNIIEKAIRRQAV 240 (261)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77888888887776653
No 237
>PRK12377 putative replication protein; Provisional
Probab=98.91 E-value=1.3e-08 Score=95.78 Aligned_cols=131 Identities=15% Similarity=0.159 Sum_probs=77.5
Q ss_pred CCCCCCccccc----CcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhh
Q psy450 200 SVPNVSWEDIG----GLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLN 272 (478)
Q Consensus 200 ~~~~~~~~~i~----g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~ 272 (478)
.....+|+++. |...+......++..... ...+++|+||||||||++|.++++.+ +..+++++..++..
T Consensus 67 ~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~----~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 67 LHRKCSFANYQVQNDGQRYALSQAKSIADELMT----GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS 142 (248)
T ss_pred ccccCCcCCcccCChhHHHHHHHHHHHHHHHHh----cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence 34555676664 333344444444443321 24679999999999999999999987 67788888888766
Q ss_pred hhhcch--HHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q psy450 273 KYIGQS--EENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRV 348 (478)
Q Consensus 273 ~~~g~~--~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~ 348 (478)
...... ......++... ....+|+|||+..... +.+...++..++..-. ....-+|.|||..
T Consensus 143 ~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~--------s~~~~~~l~~ii~~R~----~~~~ptiitSNl~ 206 (248)
T PRK12377 143 RLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRE--------TKNEQVVLNQIIDRRT----ASMRSVGMLTNLN 206 (248)
T ss_pred HHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCC--------CHHHHHHHHHHHHHHH----hcCCCEEEEcCCC
Confidence 432110 00112334443 3446999999976532 1223445555554432 1223367788864
No 238
>PRK08116 hypothetical protein; Validated
Probab=98.89 E-value=1.2e-08 Score=97.60 Aligned_cols=110 Identities=23% Similarity=0.313 Sum_probs=67.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhhhcc----hHHHHHHHHHHhHhCCCeEEEEcCCcccc
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKYIGQ----SEENIRNVFLKARSAAPCVVFFDELDSLA 306 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~~g~----~~~~~~~~~~~a~~~~p~il~iDeid~l~ 306 (478)
+.+++|+|++|||||+||.++++++ +.++++++.+++....... .......+++... ...+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4579999999999999999999986 7889999988876553211 1112223443333 23599999986432
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC-CC----CCccccC
Q psy450 307 PRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRV-DL----LDPAILR 357 (478)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~-~~----ld~~l~~ 357 (478)
. +.+....+..++.... ..+..+|.|||.+ .. ++..+.+
T Consensus 192 ~--------t~~~~~~l~~iin~r~----~~~~~~IiTsN~~~~eL~~~~~~ri~s 235 (268)
T PRK08116 192 D--------TEWAREKVYNIIDSRY----RKGLPTIVTTNLSLEELKNQYGKRIYD 235 (268)
T ss_pred C--------CHHHHHHHHHHHHHHH----HCCCCEEEECCCCHHHHHHHHhHHHHH
Confidence 1 2222333444444321 1223477788865 22 4555655
No 239
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.88 E-value=3.6e-08 Score=92.60 Aligned_cols=133 Identities=17% Similarity=0.174 Sum_probs=79.0
Q ss_pred CCCCCcccccC-cHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhhhc
Q psy450 201 VPNVSWEDIGG-LSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKYIG 276 (478)
Q Consensus 201 ~~~~~~~~i~g-~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~~g 276 (478)
....+|+++.. .+..+..+..+....... .....+++|+|+||||||+++.++++.+ +..++.++.+++......
T Consensus 66 ~~~~tFdnf~~~~~~q~~al~~a~~~~~~~-~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~ 144 (244)
T PRK07952 66 HQNCSFENYRVECEGQMNALSKARQYVEEF-DGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKD 144 (244)
T ss_pred ccCCccccccCCCchHHHHHHHHHHHHHhh-ccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHH
Confidence 44567777643 223333333322222111 1113579999999999999999999988 778888998888754332
Q ss_pred c---hHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q psy450 277 Q---SEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRV 348 (478)
Q Consensus 277 ~---~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~ 348 (478)
. .......+++... ..++|+|||++.... +.+...++..++..-. ..+..+|.|||..
T Consensus 145 ~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~--------s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~ 205 (244)
T PRK07952 145 TFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE--------SRYEKVIINQIVDRRS----SSKRPTGMLTNSN 205 (244)
T ss_pred HHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC--------CHHHHHHHHHHHHHHH----hCCCCEEEeCCCC
Confidence 1 1112233444433 457999999987642 2233456666665422 2234477788864
No 240
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=1.6e-08 Score=99.61 Aligned_cols=129 Identities=18% Similarity=0.220 Sum_probs=91.5
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHHhCCc------------------------EEEEechhhhhhhhcchHHHHHHHH
Q psy450 231 GLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------------FLAVKGPELLNKYIGQSEENIRNVF 286 (478)
Q Consensus 231 ~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------------~~~v~~~~l~~~~~g~~~~~~~~~~ 286 (478)
+..+..+||+||+|+||+++|.++|..+-+. +..+....- . ..-....++.+.
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~--~~I~idqiR~l~ 97 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-K--SSLGVDAVREVT 97 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-c--ccCCHHHHHHHH
Confidence 3448889999999999999999999887331 222221100 0 001233455555
Q ss_pred HHh----HhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCC
Q psy450 287 LKA----RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLD 362 (478)
Q Consensus 287 ~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~ 362 (478)
+.+ ..+...|++||++|.+. ....|.|++.+++ +..+.++|.+|+.++.+.|.++| |+.
T Consensus 98 ~~~~~~~~~g~~kV~iI~~ae~m~-------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq 160 (334)
T PRK07993 98 EKLYEHARLGGAKVVWLPDAALLT-------------DAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR 160 (334)
T ss_pred HHHhhccccCCceEEEEcchHhhC-------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc
Confidence 444 33445799999999997 4678999999995 56678899999999999999999 997
Q ss_pred eEEEeCCCCCHHHHHHHHH
Q psy450 363 KSLYVGLYEDRISQLGVLK 381 (478)
Q Consensus 363 ~~i~~~~pp~~~~r~~il~ 381 (478)
.+.++. |+.++....+.
T Consensus 161 -~~~~~~-~~~~~~~~~L~ 177 (334)
T PRK07993 161 -LHYLAP-PPEQYALTWLS 177 (334)
T ss_pred -cccCCC-CCHHHHHHHHH
Confidence 467775 56766666664
No 241
>KOG0745|consensus
Probab=98.88 E-value=1e-08 Score=99.97 Aligned_cols=98 Identities=32% Similarity=0.556 Sum_probs=73.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh-hhhcch-HHHHHHHHHHhH----hCCCeEEEEcCCccccC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN-KYIGQS-EENIRNVFLKAR----SAAPCVVFFDELDSLAP 307 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~-~~~g~~-~~~~~~~~~~a~----~~~p~il~iDeid~l~~ 307 (478)
..++||.||+|+|||.||+.+|+.++.||...+|..+.. .|+|+. +..+..++..|. +....|+||||+|++..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 567999999999999999999999999999999988863 477775 445666766652 33446999999999984
Q ss_pred CCCCCC---CCchhHHHHHHHHHHhhcCC
Q psy450 308 RRGQED---QSSGVMDRVVSQLLAEMDGV 333 (478)
Q Consensus 308 ~~~~~~---~~~~~~~~~~~~ll~~l~~~ 333 (478)
...+-. +.++ +-+...||+.++|.
T Consensus 306 ~~~~i~~~RDVsG--EGVQQaLLKllEGt 332 (564)
T KOG0745|consen 306 KAESIHTSRDVSG--EGVQQALLKLLEGT 332 (564)
T ss_pred cCccccccccccc--hhHHHHHHHHhccc
Confidence 432211 1122 45778888888763
No 242
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=4.7e-08 Score=95.20 Aligned_cols=144 Identities=17% Similarity=0.198 Sum_probs=98.0
Q ss_pred cHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCC-----------------------cEEEEech
Q psy450 212 LSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRM-----------------------NFLAVKGP 268 (478)
Q Consensus 212 ~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~-----------------------~~~~v~~~ 268 (478)
+....+++...+. .+.-+..+||+||.|+||+++|+.+|+.+-+ .++.+...
T Consensus 8 l~~~~~~l~~~~~-----~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (319)
T PRK06090 8 LVPVWQNWKAGLD-----AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPE 82 (319)
T ss_pred HHHHHHHHHHHHH-----cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecC
Confidence 3445555554432 2334788999999999999999999987732 12223221
Q ss_pred hhhhhhhcchHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEE
Q psy450 269 ELLNKYIGQSEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGA 344 (478)
Q Consensus 269 ~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~t 344 (478)
. .++ .-....++.+.+.+. .+...|++||++|.+. ....|.|++.+++ +..++++|.+
T Consensus 83 ~-~~~--~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~-------------~~AaNaLLKtLEE--Pp~~t~fiL~ 144 (319)
T PRK06090 83 K-EGK--SITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN-------------ESASNALLKTLEE--PAPNCLFLLV 144 (319)
T ss_pred c-CCC--cCCHHHHHHHHHHHhhCcccCCceEEEecchhhhC-------------HHHHHHHHHHhcC--CCCCeEEEEE
Confidence 0 000 012334555544432 2335699999999997 4677999999995 5567888999
Q ss_pred cCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHH
Q psy450 345 TNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKA 382 (478)
Q Consensus 345 tn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~ 382 (478)
|+.++.+.|.++| |+. .+.++. |+.++..+++..
T Consensus 145 t~~~~~lLpTI~S--RCq-~~~~~~-~~~~~~~~~L~~ 178 (319)
T PRK06090 145 THNQKRLLPTIVS--RCQ-QWVVTP-PSTAQAMQWLKG 178 (319)
T ss_pred ECChhhChHHHHh--cce-eEeCCC-CCHHHHHHHHHH
Confidence 9999999999999 984 667775 677777666653
No 243
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=3.6e-08 Score=96.14 Aligned_cols=146 Identities=21% Similarity=0.251 Sum_probs=95.5
Q ss_pred cHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc---------------------EEEEe-chh
Q psy450 212 LSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN---------------------FLAVK-GPE 269 (478)
Q Consensus 212 ~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~---------------------~~~v~-~~~ 269 (478)
+..+.+.+...+. .+.-+..+||+||+|+||+++|.++|+.+-+. +..+. .++
T Consensus 9 ~~~~~~~l~~~~~-----~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~ 83 (319)
T PRK08769 9 QQRAYDQTVAALD-----AGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPN 83 (319)
T ss_pred HHHHHHHHHHHHH-----cCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCC
Confidence 3444555554432 23347789999999999999999999877331 22221 000
Q ss_pred hhhh--hhcchHHHHHHHHHHhHh----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEE
Q psy450 270 LLNK--YIGQSEENIRNVFLKARS----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILG 343 (478)
Q Consensus 270 l~~~--~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ 343 (478)
-.+. ...-....++++.+.+.. +..-|++||++|.+. ....|.|++.++. +..++++|.
T Consensus 84 ~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~-------------~~AaNaLLKtLEE--Pp~~~~fiL 148 (319)
T PRK08769 84 RTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN-------------RAACNALLKTLEE--PSPGRYLWL 148 (319)
T ss_pred cccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC-------------HHHHHHHHHHhhC--CCCCCeEEE
Confidence 0000 000123455666554432 234699999999997 4677999999995 455777888
Q ss_pred EcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHH
Q psy450 344 ATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLK 381 (478)
Q Consensus 344 ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~ 381 (478)
+|+.++.+.|.+++ |+ ..+.++. |+.++-..++.
T Consensus 149 ~~~~~~~lLpTIrS--RC-q~i~~~~-~~~~~~~~~L~ 182 (319)
T PRK08769 149 ISAQPARLPATIRS--RC-QRLEFKL-PPAHEALAWLL 182 (319)
T ss_pred EECChhhCchHHHh--hh-eEeeCCC-cCHHHHHHHHH
Confidence 89999999999999 98 4667765 56766666664
No 244
>PRK08181 transposase; Validated
Probab=98.82 E-value=3.2e-08 Score=94.34 Aligned_cols=100 Identities=23% Similarity=0.317 Sum_probs=65.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhhhcc-hHHHHHHHHHHhHhCCCeEEEEcCCccccCCC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKYIGQ-SEENIRNVFLKARSAAPCVVFFDELDSLAPRR 309 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~~g~-~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~ 309 (478)
..+++|+||||||||+++.++++++ |..+++++..++....... ........+.... .+.+|+|||++.....
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~~- 182 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTKD- 182 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccCC-
Confidence 4579999999999999999999765 7788888988887654221 1112333444433 4469999999876532
Q ss_pred CCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q psy450 310 GQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRV 348 (478)
Q Consensus 310 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~ 348 (478)
......+..++....+ . .-+|.|||.+
T Consensus 183 -------~~~~~~Lf~lin~R~~---~--~s~IiTSN~~ 209 (269)
T PRK08181 183 -------QAETSVLFELISARYE---R--RSILITANQP 209 (269)
T ss_pred -------HHHHHHHHHHHHHHHh---C--CCEEEEcCCC
Confidence 1123445555554322 1 1367788875
No 245
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.78 E-value=6.5e-08 Score=102.48 Aligned_cols=54 Identities=28% Similarity=0.406 Sum_probs=45.4
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
....|+..|+++.|+++++..|...+.. ..+++|+||||||||++++++++.+.
T Consensus 22 ~~~~~~~~~~~vigq~~a~~~L~~~~~~--------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 22 DIEVPERLIDQVIGQEHAVEVIKKAAKQ--------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ecccCcccHHHcCChHHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 4567888999999999999988876543 23699999999999999999998764
No 246
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.77 E-value=6.6e-08 Score=95.04 Aligned_cols=163 Identities=20% Similarity=0.263 Sum_probs=108.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEec-------------hh
Q psy450 203 NVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKG-------------PE 269 (478)
Q Consensus 203 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~-------------~~ 269 (478)
...+.-++|++..|..|.-....|. -.++|+.|+.|||||+++|+++.-+.---....| ..
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~P~------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~ 86 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVDPQ------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDE 86 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcccc------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHH
Confidence 3457788999999887764433322 4579999999999999999999987432221122 11
Q ss_pred -------------------hhhhhhcchHHHHH------HHHHH---------hHhCCCeEEEEcCCccccCCCCCCCCC
Q psy450 270 -------------------LLNKYIGQSEENIR------NVFLK---------ARSAAPCVVFFDELDSLAPRRGQEDQS 315 (478)
Q Consensus 270 -------------------l~~~~~g~~~~~~~------~~~~~---------a~~~~p~il~iDeid~l~~~~~~~~~~ 315 (478)
++..-.+.++..+- ...+. ....+..|+|+||+..|.
T Consensus 87 c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~--------- 157 (423)
T COG1239 87 CRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD--------- 157 (423)
T ss_pred HHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc---------
Confidence 11111233444211 11110 011223599999999887
Q ss_pred chhHHHHHHHHHHhhcCC-----------CCCCCeEEEEEcCCC-CCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHH
Q psy450 316 SGVMDRVVSQLLAEMDGV-----------HTSQDVFILGATNRV-DLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAV 383 (478)
Q Consensus 316 ~~~~~~~~~~ll~~l~~~-----------~~~~~v~vI~ttn~~-~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~ 383 (478)
+.+++.|+..+..- ...-++++|+|.|.- ..|-+.|+. ||...+.+..|.+.++|..|.+..
T Consensus 158 ----d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~ 231 (423)
T COG1239 158 ----DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEIIRRR 231 (423)
T ss_pred ----HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHHHHH
Confidence 56788888766431 123469999999975 357788888 999999998888999999999776
Q ss_pred Hhc
Q psy450 384 VRK 386 (478)
Q Consensus 384 ~~~ 386 (478)
...
T Consensus 232 ~~f 234 (423)
T COG1239 232 LAF 234 (423)
T ss_pred HHh
Confidence 543
No 247
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.76 E-value=1.5e-07 Score=96.96 Aligned_cols=141 Identities=26% Similarity=0.291 Sum_probs=85.4
Q ss_pred CCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcE--EEEechhhhh---------
Q psy450 204 VSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNF--LAVKGPELLN--------- 272 (478)
Q Consensus 204 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~--~~v~~~~l~~--------- 272 (478)
..+.++.|+..+++.+.-.+. ...+++|+||||+|||++++.++..+...- ..+....+.+
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~--------~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~ 259 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAA--------GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQK 259 (506)
T ss_pred cCeEEEECcHHHHhhhheecc--------CCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccC
Confidence 367788888777766432211 156799999999999999999987652110 0111111100
Q ss_pred -----------------hhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC-
Q psy450 273 -----------------KYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH- 334 (478)
Q Consensus 273 -----------------~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~- 334 (478)
..+|.....-...+..|.. .+||+||++.+. ..++..|+..|+.-.
T Consensus 260 ~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~~-------------~~~~~~L~~~LE~g~v 323 (506)
T PRK09862 260 QWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEFE-------------RRTLDALREPIESGQI 323 (506)
T ss_pred CcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhCC-------------HHHHHHHHHHHHcCcE
Confidence 0111111111123444433 499999998875 345666666553211
Q ss_pred ----------CCCCeEEEEEcCCCC---------------------CCCccccCCCCCCeEEEeCCC
Q psy450 335 ----------TSQDVFILGATNRVD---------------------LLDPAILRPGRLDKSLYVGLY 370 (478)
Q Consensus 335 ----------~~~~v~vI~ttn~~~---------------------~ld~~l~~~~Rf~~~i~~~~p 370 (478)
...++.+|+|+|... .++.+++. |||..+.++.|
T Consensus 324 ~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~ 388 (506)
T PRK09862 324 HLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLP 388 (506)
T ss_pred EEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCC
Confidence 134689999999752 36678888 99999999864
No 248
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.76 E-value=5.9e-08 Score=94.48 Aligned_cols=101 Identities=21% Similarity=0.317 Sum_probs=64.6
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhhhcch-HHHHHHHHHHhHhCCCeEEEEcCCccccCC
Q psy450 233 KRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKYIGQS-EENIRNVFLKARSAAPCVVFFDELDSLAPR 308 (478)
Q Consensus 233 ~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~~g~~-~~~~~~~~~~a~~~~p~il~iDeid~l~~~ 308 (478)
...|++|+||+|||||+|+.++|+++ |.++..+..+++........ ...+...++... ...+|+|||+..-..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~~- 231 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQM- 231 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCccc-
Confidence 36789999999999999999999988 77888888887765532211 112334444443 346999999865431
Q ss_pred CCCCCCCchhHH-HHHHHHHHh-hcCCCCCCCeEEEEEcCCC
Q psy450 309 RGQEDQSSGVMD-RVVSQLLAE-MDGVHTSQDVFILGATNRV 348 (478)
Q Consensus 309 ~~~~~~~~~~~~-~~~~~ll~~-l~~~~~~~~v~vI~ttn~~ 348 (478)
+.+.. .++..++.. +. .+...|.|||.+
T Consensus 232 -------s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 232 -------SSWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred -------cHHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 22222 344444432 22 234578889864
No 249
>PRK06526 transposase; Provisional
Probab=98.74 E-value=6.5e-08 Score=91.72 Aligned_cols=100 Identities=16% Similarity=0.273 Sum_probs=62.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhhhcc-hHHHHHHHHHHhHhCCCeEEEEcCCccccCCC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKYIGQ-SEENIRNVFLKARSAAPCVVFFDELDSLAPRR 309 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~~g~-~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~ 309 (478)
+.+++|+||||||||++|.+++.++ |..+..++..++....... ........+... ..+.+|+|||++.+....
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~~~ 175 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPFEP 175 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCCCH
Confidence 5679999999999999999998876 6677777777665543211 111222233332 345799999998875321
Q ss_pred CCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q psy450 310 GQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRV 348 (478)
Q Consensus 310 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~ 348 (478)
.....+.+++....+ . . .+|.|||.+
T Consensus 176 --------~~~~~L~~li~~r~~---~-~-s~IitSn~~ 201 (254)
T PRK06526 176 --------EAANLFFQLVSSRYE---R-A-SLIVTSNKP 201 (254)
T ss_pred --------HHHHHHHHHHHHHHh---c-C-CEEEEcCCC
Confidence 123445555544321 1 1 367788876
No 250
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=1.1e-07 Score=93.53 Aligned_cols=131 Identities=18% Similarity=0.216 Sum_probs=88.9
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHHhCC-------------------------cEEEEechhhhhhhhc-----chHH
Q psy450 231 GLKRSGLLLYGPPGTGKTLIAKAVATECRM-------------------------NFLAVKGPELLNKYIG-----QSEE 280 (478)
Q Consensus 231 ~~~~~~iLl~Gp~GtGKT~la~~la~~~~~-------------------------~~~~v~~~~l~~~~~g-----~~~~ 280 (478)
+..+..+||+||+|+|||++|+.+|+.+.+ .++++....-. ...| -.-.
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id 96 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKID 96 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHH
Confidence 344888999999999999999999998732 13333321100 0001 1345
Q ss_pred HHHHHHHHhHh----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCcccc
Q psy450 281 NIRNVFLKARS----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAIL 356 (478)
Q Consensus 281 ~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~ 356 (478)
.++++.+.+.. ....|+++|+++.+. ....+.+++.++... .++.+|.+|+.++.+.+.++
T Consensus 97 ~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld-------------~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 97 AVREIIDNVYLTSVRGGLRVILIHPAESMN-------------LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHHhhCcccCCceEEEEechhhCC-------------HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHH
Confidence 56776666543 334699999999997 356678888888653 34667778898999999999
Q ss_pred CCCCCCeEEEeCCCCCHHHHHHHHH
Q psy450 357 RPGRLDKSLYVGLYEDRISQLGVLK 381 (478)
Q Consensus 357 ~~~Rf~~~i~~~~pp~~~~r~~il~ 381 (478)
+ |+ ..+.++. |+.++....+.
T Consensus 162 S--Rc-~~~~~~~-~~~~~~~~~L~ 182 (325)
T PRK08699 162 S--RC-RKMVLPA-PSHEEALAYLR 182 (325)
T ss_pred H--Hh-hhhcCCC-CCHHHHHHHHH
Confidence 8 88 4566664 67777666664
No 251
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.71 E-value=2.1e-07 Score=88.36 Aligned_cols=71 Identities=27% Similarity=0.501 Sum_probs=50.5
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhhhcchHH-HHH-HHHHHhHhCCCeEEEEcCCcccc
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKYIGQSEE-NIR-NVFLKARSAAPCVVFFDELDSLA 306 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~~g~~~~-~~~-~~~~~a~~~~p~il~iDeid~l~ 306 (478)
+.+++|+||||+|||+||-|+++++ |.+++.++.++++......-.. ... .+..... ...+|+|||+....
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~--~~dlLIiDDlG~~~ 180 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK--KVDLLIIDDIGYEP 180 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh--cCCEEEEecccCcc
Confidence 6789999999999999999999987 7889999999887664322111 111 1222122 33599999987654
No 252
>PRK06921 hypothetical protein; Provisional
Probab=98.71 E-value=2.7e-07 Score=88.20 Aligned_cols=68 Identities=24% Similarity=0.291 Sum_probs=47.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh----CCcEEEEechhhhhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCcc
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC----RMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDS 304 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~----~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~ 304 (478)
..+++|+||||+|||+|+.++++++ +..+++++..++....... .......+... ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 5679999999999999999999976 5677888877665443211 11122233333 2346999999954
No 253
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.70 E-value=3.2e-08 Score=85.17 Aligned_cols=106 Identities=21% Similarity=0.388 Sum_probs=67.0
Q ss_pred CcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCC---cEEEEechhhhhhhhcchHHHHHHHHH
Q psy450 211 GLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRM---NFLAVKGPELLNKYIGQSEENIRNVFL 287 (478)
Q Consensus 211 g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~---~~~~v~~~~l~~~~~g~~~~~~~~~~~ 287 (478)
|.+...+++.+.+...... ...++|+|++||||+++|+++....+. +++.+++..+. .+.++
T Consensus 2 G~S~~~~~l~~~l~~~a~~----~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~ 66 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKS----SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLE 66 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCS----SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHH
T ss_pred CCCHHHHHHHHHHHHHhCC----CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHH
Confidence 5556666676666665432 456999999999999999999887653 55555655432 33555
Q ss_pred HhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q psy450 288 KARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRV 348 (478)
Q Consensus 288 ~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~ 348 (478)
.+ ....|||+|+|.|.. .....|+..++... ..++.+|++++.+
T Consensus 67 ~a---~~gtL~l~~i~~L~~-------------~~Q~~L~~~l~~~~-~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 67 QA---KGGTLYLKNIDRLSP-------------EAQRRLLDLLKRQE-RSNVRLIASSSQD 110 (138)
T ss_dssp HC---TTSEEEEECGCCS-H-------------HHHHHHHHHHHHCT-TTTSEEEEEECC-
T ss_pred Hc---CCCEEEECChHHCCH-------------HHHHHHHHHHHhcC-CCCeEEEEEeCCC
Confidence 55 445999999999973 34455555554322 3455666666653
No 254
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.67 E-value=1.4e-07 Score=92.70 Aligned_cols=71 Identities=23% Similarity=0.374 Sum_probs=50.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhhhcc---hHHHHHHHHHHhHhCCCeEEEEcCCcccc
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKYIGQ---SEENIRNVFLKARSAAPCVVFFDELDSLA 306 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~~g~---~~~~~~~~~~~a~~~~p~il~iDeid~l~ 306 (478)
..+++|+||+|||||+|+.++|+++ |..+++++..++....... ........+.... ...+|+|||+....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~ 259 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK 259 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC
Confidence 4679999999999999999999987 7789999988876654221 1111112233333 33699999997764
No 255
>PRK09183 transposase/IS protein; Provisional
Probab=98.66 E-value=1.1e-07 Score=90.70 Aligned_cols=72 Identities=24% Similarity=0.410 Sum_probs=50.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhhhcc-hHHHHHHHHHHhHhCCCeEEEEcCCcccc
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKYIGQ-SEENIRNVFLKARSAAPCVVFFDELDSLA 306 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~~g~-~~~~~~~~~~~a~~~~p~il~iDeid~l~ 306 (478)
..+++|+||||||||+++.+++..+ |..+.+++..++...+... ....+...+... ...+.+++|||++...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 5579999999999999999997664 6778888877776443211 111233444443 2456799999998764
No 256
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.66 E-value=1.6e-07 Score=97.20 Aligned_cols=188 Identities=20% Similarity=0.238 Sum_probs=102.6
Q ss_pred ccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhh-----hcch
Q psy450 207 EDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKY-----IGQS 278 (478)
Q Consensus 207 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~-----~g~~ 278 (478)
..++|.....+.+...+..... ...+++++|++||||+++|+++.... +.+|+.++|..+.... .|..
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a~----~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~ 214 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIAP----SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYE 214 (445)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCC
Confidence 4566666666666655544321 14569999999999999999998765 4689999997663221 1100
Q ss_pred H-------HHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC-----C----CCCeEEE
Q psy450 279 E-------ENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH-----T----SQDVFIL 342 (478)
Q Consensus 279 ~-------~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~----~~~v~vI 342 (478)
. ......+.. ...++|||||++.|.. .....|+..++.-. . ..++.+|
T Consensus 215 ~~~~~~~~~~~~g~~~~---a~~gtl~l~~i~~l~~-------------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii 278 (445)
T TIGR02915 215 KGAFTGAVKQTLGKIEY---AHGGTLFLDEIGDLPL-------------NLQAKLLRFLQERVIERLGGREEIPVDVRIV 278 (445)
T ss_pred CCCcCCCccCCCCceeE---CCCCEEEEechhhCCH-------------HHHHHHHHHHhhCeEEeCCCCceeeeceEEE
Confidence 0 000011211 2346999999999973 34455555554211 0 1257888
Q ss_pred EEcCCC-------CCCCccccCCCCCCeEEEeCCCCCHHHHHHH---HHHHHhcC----CCC-CCCC---HHHHHHhcCC
Q psy450 343 GATNRV-------DLLDPAILRPGRLDKSLYVGLYEDRISQLGV---LKAVVRKF----KLS-DDVS---LDSLVHHFPS 404 (478)
Q Consensus 343 ~ttn~~-------~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~i---l~~~~~~~----~~~-~~~~---~~~la~~~~~ 404 (478)
++|+.. ..+.+.|.. |+. .+.+.+||-++.+.+| .+.+++.. +.. ...+ +..|..+
T Consensus 279 ~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--- 352 (445)
T TIGR02915 279 CATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAH--- 352 (445)
T ss_pred EecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhC---
Confidence 888764 223333333 432 2445556666555443 34444322 111 1122 3333322
Q ss_pred CC--CHHHHHHHHHHHHH
Q psy450 405 QM--SGADIYSICSNAWT 420 (478)
Q Consensus 405 ~~--sg~di~~l~~~a~~ 420 (478)
.+ +-+++++++..|+.
T Consensus 353 ~wpgNvreL~~~i~~a~~ 370 (445)
T TIGR02915 353 AWPGNVRELENKVKRAVI 370 (445)
T ss_pred CCCChHHHHHHHHHHHHH
Confidence 23 34677777777764
No 257
>KOG1942|consensus
Probab=98.65 E-value=2.1e-06 Score=80.03 Aligned_cols=58 Identities=24% Similarity=0.283 Sum_probs=42.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
.+...-..++|++.+++..--.+.... ......+.+||.||||||||.+|-++++++|
T Consensus 32 ~~~~~~~g~vGQ~~AReAagiivdlik-~KkmaGravLlaGppgtGKTAlAlaisqELG 89 (456)
T KOG1942|consen 32 NAVEVAAGFVGQENAREAAGIIVDLIK-SKKMAGRAVLLAGPPGTGKTALALAISQELG 89 (456)
T ss_pred CeeecccccccchhhhhhhhHHHHHHH-hhhccCcEEEEecCCCCchhHHHHHHHHHhC
Confidence 344555678999988876543333332 2223378899999999999999999999874
No 258
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.63 E-value=1.6e-07 Score=101.41 Aligned_cols=159 Identities=18% Similarity=0.175 Sum_probs=92.3
Q ss_pred cccCcHHHHHHHHHHHHhhhhh--------------CCCC-CceEEEeCCCCChHHHHHHHHHHHhCC-------cEEEE
Q psy450 208 DIGGLSKLKAEILSTFRGVNRT--------------SGLK-RSGLLLYGPPGTGKTLIAKAVATECRM-------NFLAV 265 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~~~~--------------~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~-------~~~~v 265 (478)
.|.|.+.+|+.+.-.+-.-... ...+ ..+|||+|+||||||.+|+++++.... ++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 5789999998775433221100 0111 448999999999999999999986532 33333
Q ss_pred echhhhhhhhcchHHHH--HHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC---------
Q psy450 266 KGPELLNKYIGQSEENI--RNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH--------- 334 (478)
Q Consensus 266 ~~~~l~~~~~g~~~~~~--~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------- 334 (478)
.+..........+.... ...+ .....++++|||++.+.. .....|+..|+.-.
T Consensus 531 gLTa~~~~~d~~tG~~~le~GaL---vlAdgGtL~IDEidkms~-------------~~Q~aLlEaMEqqtIsI~KaGi~ 594 (915)
T PTZ00111 531 GLTASIKFNESDNGRAMIQPGAV---VLANGGVCCIDELDKCHN-------------ESRLSLYEVMEQQTVTIAKAGIV 594 (915)
T ss_pred cccchhhhcccccCcccccCCcE---EEcCCCeEEecchhhCCH-------------HHHHHHHHHHhCCEEEEecCCcc
Confidence 33222110000000000 0011 112235999999999863 34455555554211
Q ss_pred --CCCCeEEEEEcCCCC-------------CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHH
Q psy450 335 --TSQDVFILGATNRVD-------------LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVV 384 (478)
Q Consensus 335 --~~~~v~vI~ttn~~~-------------~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~ 384 (478)
-+.++.|||++|..+ .+++++++ |||....+..+|+.+.-..|-.+.+
T Consensus 595 ~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 595 ATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred eecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHH
Confidence 134689999999741 37899999 9998876665667665555555444
No 259
>PF13173 AAA_14: AAA domain
Probab=98.63 E-value=2.8e-07 Score=78.12 Aligned_cols=70 Identities=24% Similarity=0.402 Sum_probs=48.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhC--CcEEEEechhhhhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCcccc
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECR--MNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLA 306 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~--~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~ 306 (478)
+.++|+||+|||||++++.+++.+. .+++++++.+.......... +.+.+.......+.+|||||++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc
Confidence 4589999999999999999998886 78888888765432211111 2233332222256799999999884
No 260
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.60 E-value=7.7e-07 Score=92.83 Aligned_cols=156 Identities=22% Similarity=0.332 Sum_probs=91.5
Q ss_pred cccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh-----hhcc
Q psy450 206 WEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK-----YIGQ 277 (478)
Q Consensus 206 ~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~-----~~g~ 277 (478)
+.+++|.....+.+.+.+...... ...++++|++|||||++|+++.... +.+|+.++|+.+... ..|.
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~~~----~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~ 212 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLSRS----SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGH 212 (469)
T ss_pred cccceecCHHHHHHHHHHHHHhcc----CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCC
Confidence 456778777777766665543322 4569999999999999999998876 468999999776321 1111
Q ss_pred hHHH-------HHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC-----C----CCCeEE
Q psy450 278 SEEN-------IRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH-----T----SQDVFI 341 (478)
Q Consensus 278 ~~~~-------~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~----~~~v~v 341 (478)
.... ....|.. ...+.|||||++.|.. .....|+..++... . ..++.+
T Consensus 213 ~~g~~~~~~~~~~g~~~~---a~~Gtl~l~~i~~l~~-------------~~q~~L~~~l~~~~~~~~~~~~~~~~~~ri 276 (469)
T PRK10923 213 EKGAFTGANTIRQGRFEQ---ADGGTLFLDEIGDMPL-------------DVQTRLLRVLADGQFYRVGGYAPVKVDVRI 276 (469)
T ss_pred CCCCCCCCCcCCCCCeeE---CCCCEEEEeccccCCH-------------HHHHHHHHHHhcCcEEeCCCCCeEEeeEEE
Confidence 1000 0011222 2245899999999973 34455555554321 0 124688
Q ss_pred EEEcCCC-------CCCCccccCCCCCCeEEEeCCCCCHHHHHH---HHHHHH
Q psy450 342 LGATNRV-------DLLDPAILRPGRLDKSLYVGLYEDRISQLG---VLKAVV 384 (478)
Q Consensus 342 I~ttn~~-------~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~---il~~~~ 384 (478)
|+||+.. ..+.+.+.. ||. .+.+.+||-++.+.+ ++..++
T Consensus 277 i~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l 326 (469)
T PRK10923 277 IAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFL 326 (469)
T ss_pred EEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHH
Confidence 8888764 134445554 553 244445565544433 334444
No 261
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.58 E-value=7.2e-08 Score=86.50 Aligned_cols=100 Identities=23% Similarity=0.366 Sum_probs=59.8
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhhhcch-HHHHHHHHHHhHhCCCeEEEEcCCccccCCC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKYIGQS-EENIRNVFLKARSAAPCVVFFDELDSLAPRR 309 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~~g~~-~~~~~~~~~~a~~~~p~il~iDeid~l~~~~ 309 (478)
..+++|+||||||||++|.++++++ |.++.+++.+++........ .......+...... .+|+|||+.....
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~--dlLilDDlG~~~~-- 122 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRV--DLLILDDLGYEPL-- 122 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTS--SCEEEETCTSS----
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccc--cEecccccceeee--
Confidence 5689999999999999999999876 88899999988876643221 11223344444433 5999999864321
Q ss_pred CCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q psy450 310 GQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRV 348 (478)
Q Consensus 310 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~ 348 (478)
+.+....+..++..-.+ . + -.|.|||..
T Consensus 123 ------~~~~~~~l~~ii~~R~~---~-~-~tIiTSN~~ 150 (178)
T PF01695_consen 123 ------SEWEAELLFEIIDERYE---R-K-PTIITSNLS 150 (178)
T ss_dssp -------HHHHHCTHHHHHHHHH---T---EEEEEESS-
T ss_pred ------cccccccchhhhhHhhc---c-c-CeEeeCCCc
Confidence 22223444444444321 1 2 356688864
No 262
>KOG0990|consensus
Probab=98.58 E-value=1.9e-07 Score=88.13 Aligned_cols=160 Identities=19% Similarity=0.151 Sum_probs=99.8
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcE------EEEechhhh
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNF------LAVKGPELL 271 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~------~~v~~~~l~ 271 (478)
.+.++...++++++.+++...+.+..... + -.+.|+|||||+|||+...+.|..+-.+. ..++.++-.
T Consensus 32 vekyrP~~l~dv~~~~ei~st~~~~~~~~----~--lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~r 105 (360)
T KOG0990|consen 32 VEKYRPPFLGIVIKQEPIWSTENRYSGMP----G--LPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDR 105 (360)
T ss_pred ccCCCCchhhhHhcCCchhhHHHHhccCC----C--CCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCcc
Confidence 45566777889999998888887762211 1 23899999999999999999999885531 111111100
Q ss_pred hhhhcchHHHHHHHHHHhH-------hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEE
Q psy450 272 NKYIGQSEENIRNVFLKAR-------SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGA 344 (478)
Q Consensus 272 ~~~~g~~~~~~~~~~~~a~-------~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~t 344 (478)
.. .....-...|..++ ...+..+++||+|.+. +...++|-...+.+.. ++.+...
T Consensus 106 --gi-d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT-------------~~AQnALRRviek~t~--n~rF~ii 167 (360)
T KOG0990|consen 106 --GI-DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT-------------RDAQNALRRVIEKYTA--NTRFATI 167 (360)
T ss_pred --CC-cchHHHHHHHHhhccceeccccCceeEEEecchhHhh-------------HHHHHHHHHHHHHhcc--ceEEEEe
Confidence 00 11222223444443 2366799999999997 3445555555554433 4455567
Q ss_pred cCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHh
Q psy450 345 TNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVR 385 (478)
Q Consensus 345 tn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~ 385 (478)
+|.|..+.|++++ ||.+.-+-++ +...-...+..+.+
T Consensus 168 ~n~~~ki~pa~qs--Rctrfrf~pl--~~~~~~~r~shi~e 204 (360)
T KOG0990|consen 168 SNPPQKIHPAQQS--RCTRFRFAPL--TMAQQTERQSHIRE 204 (360)
T ss_pred ccChhhcCchhhc--ccccCCCCCC--ChhhhhhHHHHHHh
Confidence 8999999999998 8865554444 34444444555443
No 263
>KOG2035|consensus
Probab=98.58 E-value=9.9e-07 Score=81.66 Aligned_cols=172 Identities=19% Similarity=0.191 Sum_probs=111.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh-CC--c----------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC-RM--N---------------- 261 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~-~~--~---------------- 261 (478)
+.+.+++.+.+.++....|...... + .-.|+++|||+|+||-|.+.++-+++ |. .
T Consensus 7 yrpksl~~l~~~~e~~~~Lksl~~~-----~-d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kk 80 (351)
T KOG2035|consen 7 YRPKSLDELIYHEELANLLKSLSST-----G-DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKK 80 (351)
T ss_pred cCcchhhhcccHHHHHHHHHHhccc-----C-CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCce
Confidence 3445677788888877777765431 1 13479999999999999999998876 21 1
Q ss_pred --E--------EEEechhhhhhhhcc-hHHHHHHHHHHhHhC---------CCeEEEEcCCccccCCCCCCCCCchhHHH
Q psy450 262 --F--------LAVKGPELLNKYIGQ-SEENIRNVFLKARSA---------APCVVFFDELDSLAPRRGQEDQSSGVMDR 321 (478)
Q Consensus 262 --~--------~~v~~~~l~~~~~g~-~~~~~~~~~~~a~~~---------~p~il~iDeid~l~~~~~~~~~~~~~~~~ 321 (478)
+ +++++++ .|. ..-.+.+++...... ...+++|.|+|.|. +.
T Consensus 81 lEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT-------------~d 142 (351)
T KOG2035|consen 81 LEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT-------------RD 142 (351)
T ss_pred EEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh-------------HH
Confidence 1 1112221 233 233345555444322 23599999999997 34
Q ss_pred HHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCC-CHHHHHH
Q psy450 322 VVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDV-SLDSLVH 400 (478)
Q Consensus 322 ~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~-~~~~la~ 400 (478)
....|-..|+... .++.+|..+|..+.+=+++++ |+ ..+.++- |+.++...++...+++.++.... -+..+++
T Consensus 143 AQ~aLRRTMEkYs--~~~RlIl~cns~SriIepIrS--RC-l~iRvpa-ps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~ 216 (351)
T KOG2035|consen 143 AQHALRRTMEKYS--SNCRLILVCNSTSRIIEPIRS--RC-LFIRVPA-PSDEEITSVLSKVLKKEGLQLPKELLKRIAE 216 (351)
T ss_pred HHHHHHHHHHHHh--cCceEEEEecCcccchhHHhh--he-eEEeCCC-CCHHHHHHHHHHHHHHhcccCcHHHHHHHHH
Confidence 5566666666543 345677778888888899998 76 5667776 68999999999888876654332 2445555
Q ss_pred hc
Q psy450 401 HF 402 (478)
Q Consensus 401 ~~ 402 (478)
.+
T Consensus 217 kS 218 (351)
T KOG2035|consen 217 KS 218 (351)
T ss_pred Hh
Confidence 43
No 264
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.57 E-value=3.4e-07 Score=77.71 Aligned_cols=86 Identities=22% Similarity=0.318 Sum_probs=54.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh--------CCcEEEEechhhhhh----------h----hc-chHHH-HHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC--------RMNFLAVKGPELLNK----------Y----IG-QSEEN-IRNVFLKA 289 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~--------~~~~~~v~~~~l~~~----------~----~g-~~~~~-~~~~~~~a 289 (478)
.+.++++||||+|||++++.+++.+ +.+++.++++...+. . .. .+... ...+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4568999999999999999999987 678888887544311 0 01 12232 33344444
Q ss_pred HhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhc
Q psy450 290 RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMD 331 (478)
Q Consensus 290 ~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~ 331 (478)
......+|+|||+|.+. + ...++.+...++
T Consensus 84 ~~~~~~~lviDe~~~l~-~-----------~~~l~~l~~l~~ 113 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S-----------DEFLEFLRSLLN 113 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T-----------HHHHHHHHHHTC
T ss_pred HhcCCeEEEEeChHhcC-C-----------HHHHHHHHHHHh
Confidence 44444599999999984 1 456666655555
No 265
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.56 E-value=2.5e-07 Score=86.59 Aligned_cols=178 Identities=18% Similarity=0.274 Sum_probs=91.3
Q ss_pred cCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc---EEEEec-hh----hhhhh-------
Q psy450 210 GGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN---FLAVKG-PE----LLNKY------- 274 (478)
Q Consensus 210 ~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~---~~~v~~-~~----l~~~~------- 274 (478)
+|-++..+.|.+.+... +...++++||+|+|||++++.+.+.+... .+++.. .. .....
T Consensus 2 ~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 2 FGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLA 75 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHH
Confidence 45666666666655432 14569999999999999999999988321 112211 00 00000
Q ss_pred ------h-----------------cchHHHHHHHHHHhHhCC-CeEEEEcCCcccc-CCCCCCCCCchhHHHHHHHHHHh
Q psy450 275 ------I-----------------GQSEENIRNVFLKARSAA-PCVVFFDELDSLA-PRRGQEDQSSGVMDRVVSQLLAE 329 (478)
Q Consensus 275 ------~-----------------g~~~~~~~~~~~~a~~~~-p~il~iDeid~l~-~~~~~~~~~~~~~~~~~~~ll~~ 329 (478)
. ......+..++....... ..||+|||++.+. .... .......+...
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~--------~~~~~~~l~~~ 147 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE--------DKDFLKSLRSL 147 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT--------THHHHHHHHHH
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc--------hHHHHHHHHHH
Confidence 0 112344556666654432 3899999999998 2210 13455566666
Q ss_pred hcCCCCCCCeEEEEEcCCCCC------CCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCC---CCCCHHHHHH
Q psy450 330 MDGVHTSQDVFILGATNRVDL------LDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLS---DDVSLDSLVH 400 (478)
Q Consensus 330 l~~~~~~~~v~vI~ttn~~~~------ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~---~~~~~~~la~ 400 (478)
++......++.+|.++..... -...+. +|+.. +.++. -+.++-.++++..++.. .. ++.++..+..
T Consensus 148 ~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~-l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~ 222 (234)
T PF01637_consen 148 LDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKP-LSKEEAREFLKELFKEL-IKLPFSDEDIEEIYS 222 (234)
T ss_dssp HHH----TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE-----HHHHHHHHHHHHHCC-------HHHHHHHHH
T ss_pred HhhccccCCceEEEECCchHHHHHhhcccCccc--cccce-EEEee-CCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHH
Confidence 655444555555555443211 122333 37776 88874 78888888998877665 21 3344666666
Q ss_pred hcCCCCC
Q psy450 401 HFPSQMS 407 (478)
Q Consensus 401 ~~~~~~s 407 (478)
.+ +|+.
T Consensus 223 ~~-gG~P 228 (234)
T PF01637_consen 223 LT-GGNP 228 (234)
T ss_dssp HH-TT-H
T ss_pred Hh-CCCH
Confidence 55 4543
No 266
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=3e-07 Score=91.77 Aligned_cols=77 Identities=22% Similarity=0.348 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHhhhhc--ccCCCCC-CCC---CCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChH
Q psy450 174 RDLQKEDFQQIYDDLQSRY--SDQLDAP-SVP---NVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGK 247 (478)
Q Consensus 174 ~~it~~d~~~a~~~~~~~~--~~~~~~~-~~~---~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGK 247 (478)
......++....+.+.... ....... ... ...|.|+.|++..|..+.-... | .+|+|++|||||||
T Consensus 140 ~v~~~~~l~ev~~~l~g~~~l~~~~~~~~~~~~~~~~D~~DV~GQ~~AKrAleiAAA------G--gHnLl~~GpPGtGK 211 (490)
T COG0606 140 PVYGARYLEEVVNFLEGKLRLPIPIPSEVIESFSLAPDFKDVKGQEQAKRALEIAAA------G--GHNLLLVGPPGTGK 211 (490)
T ss_pred CccchhhHHHHHHHhcCCcCCCCCCccccccccccCcchhhhcCcHHHHHHHHHHHh------c--CCcEEEecCCCCch
Confidence 3344556777777776531 1111010 111 3478899999999998875432 2 67899999999999
Q ss_pred HHHHHHHHHHh
Q psy450 248 TLIAKAVATEC 258 (478)
Q Consensus 248 T~la~~la~~~ 258 (478)
|++|+.+...+
T Consensus 212 Tmla~Rl~~lL 222 (490)
T COG0606 212 TMLASRLPGLL 222 (490)
T ss_pred HHhhhhhcccC
Confidence 99999887655
No 267
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.56 E-value=1.3e-06 Score=90.91 Aligned_cols=151 Identities=22% Similarity=0.288 Sum_probs=85.8
Q ss_pred ccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhh-----hcch
Q psy450 207 EDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKY-----IGQS 278 (478)
Q Consensus 207 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~-----~g~~ 278 (478)
..+.|.+.....+.+.+...... ...++++|++||||+++|+++.... +.+|+.++|..+.... .|..
T Consensus 143 ~~ii~~S~~~~~~~~~~~~~a~~----~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~ 218 (457)
T PRK11361 143 GHILTNSPAMMDICKDTAKIALS----QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHE 218 (457)
T ss_pred cceecccHHHhHHHHHHHHHcCC----CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCC
Confidence 34566655555554444333221 4569999999999999999997764 5689999997663221 1110
Q ss_pred HHH-------HHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC-----C----CCCeEEE
Q psy450 279 EEN-------IRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH-----T----SQDVFIL 342 (478)
Q Consensus 279 ~~~-------~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~----~~~v~vI 342 (478)
... ....+.. ....+|||||++.+.. .....|+..++.-. . ..++.+|
T Consensus 219 ~~~~~~~~~~~~g~~~~---a~~gtl~ld~i~~l~~-------------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii 282 (457)
T PRK11361 219 KGAFTGAQTLRQGLFER---ANEGTLLLDEIGEMPL-------------VLQAKLLRILQEREFERIGGHQTIKVDIRII 282 (457)
T ss_pred CCCCCCCCCCCCCceEE---CCCCEEEEechhhCCH-------------HHHHHHHHHHhcCcEEeCCCCceeeeceEEE
Confidence 000 0011222 2235999999999973 34455555554311 1 1247889
Q ss_pred EEcCCCCCCCccccCCCCCCe-------EEEeCCCCCHHHHHHHH
Q psy450 343 GATNRVDLLDPAILRPGRLDK-------SLYVGLYEDRISQLGVL 380 (478)
Q Consensus 343 ~ttn~~~~ld~~l~~~~Rf~~-------~i~~~~pp~~~~r~~il 380 (478)
+||+..-. .+...|+|.. .+.+.+||-++.+.+|.
T Consensus 283 ~~t~~~l~---~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~ 324 (457)
T PRK11361 283 AATNRDLQ---AMVKEGTFREDLFYRLNVIHLILPPLRDRREDIS 324 (457)
T ss_pred EeCCCCHH---HHHHcCCchHHHHHHhccceecCCChhhchhhHH
Confidence 99986421 2222233333 34555666665555443
No 268
>KOG2680|consensus
Probab=98.54 E-value=4.5e-06 Score=78.16 Aligned_cols=69 Identities=26% Similarity=0.397 Sum_probs=45.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCC--cEEEEechhh
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRM--NFLAVKGPEL 270 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~--~~~~v~~~~l 270 (478)
.|...-+.++|+-++.+..--.+... +......+.+|+.|+||+|||.+|-.+++.+|. ||..+.++++
T Consensus 34 e~~~~s~GmVGQ~~AR~Aagvi~kmi-~egkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI 104 (454)
T KOG2680|consen 34 EPRYVSEGMVGQVKARKAAGVILKMI-REGKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEI 104 (454)
T ss_pred CcccccccchhhHHHHHHhHHHHHHH-HcCcccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeeccee
Confidence 35556677888877665543322222 222223778999999999999999999998853 5555544433
No 269
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.53 E-value=3e-06 Score=88.11 Aligned_cols=207 Identities=18% Similarity=0.208 Sum_probs=111.7
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhh-h-----
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPEL-L----- 271 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l-~----- 271 (478)
...+.+.+.+++....+-.+.++..+...... ..+.+-+||+||||||||++++.+|++++..+.+-..+.. .
T Consensus 10 ~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~-~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~ 88 (519)
T PF03215_consen 10 VEKYAPKTLDELAVHKKKVEEVRSWLEEMFSG-SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQ 88 (519)
T ss_pred chhcCCCCHHHhhccHHHHHHHHHHHHHHhcc-CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccc
Confidence 44566778888888877777777766654321 1124467889999999999999999999988776432211 0
Q ss_pred -hhhhcch---------HHHHHHH-HHHhHh-----------CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHh
Q psy450 272 -NKYIGQS---------EENIRNV-FLKARS-----------AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAE 329 (478)
Q Consensus 272 -~~~~g~~---------~~~~~~~-~~~a~~-----------~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~ 329 (478)
..+.+.. ......+ +..++. ..+.||+|+|+=.++... . .+....|...
T Consensus 89 ~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~------~---~~f~~~L~~~ 159 (519)
T PF03215_consen 89 EDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD------T---SRFREALRQY 159 (519)
T ss_pred cccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh------H---HHHHHHHHHH
Confidence 0111110 0111111 111111 246799999987655321 1 2333334334
Q ss_pred hcCCCCCC-CeEEEEEc-------CCC--------CCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcC------
Q psy450 330 MDGVHTSQ-DVFILGAT-------NRV--------DLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKF------ 387 (478)
Q Consensus 330 l~~~~~~~-~v~vI~tt-------n~~--------~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~------ 387 (478)
+.. ... ++++|.|- |.. ..+++.++...+. ..|.|.+ -...-..+-|+..+...
T Consensus 160 l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNp-Ia~T~mkKaL~rI~~~E~~~~~~ 235 (519)
T PF03215_consen 160 LRS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNP-IAPTFMKKALKRILKKEARSSSG 235 (519)
T ss_pred HHc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecC-CCHHHHHHHHHHHHHHHhhhhcC
Confidence 432 222 66666661 111 1356667664344 4555543 34444444444444322
Q ss_pred --CCCCCCC-HHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q psy450 388 --KLSDDVS-LDSLVHHFPSQMSGADIYSICSNAWTRAI 423 (478)
Q Consensus 388 --~~~~~~~-~~~la~~~~~~~sg~di~~l~~~a~~~a~ 423 (478)
....... ++.|+..+ ++||+.++..-...+.
T Consensus 236 ~~~~p~~~~~l~~I~~~s-----~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 236 KNKVPDKQSVLDSIAESS-----NGDIRSAINNLQFWCL 269 (519)
T ss_pred CccCCChHHHHHHHHHhc-----CchHHHHHHHHHHHhc
Confidence 1222122 55666543 4599998887776666
No 270
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.47 E-value=2.4e-07 Score=78.61 Aligned_cols=76 Identities=17% Similarity=0.200 Sum_probs=60.7
Q ss_pred ccCccchhhhhHHHHhhhhcC-CCeEEEecccccccch----------hhHhhhccccccccccccchhhhccCCCcEEE
Q psy450 24 FATPRYHHLNDIVKINLKKYN-LDIFKYDEVNYLCNVK----------YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKL 92 (478)
Q Consensus 24 ~~~~~~~~~~~if~~~a~~~~-p~ilfiDe~d~i~~~r----------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~v 92 (478)
+.......++++|+ .+++.+ ||||||||+|.+++.. .++.++..+|... ....+++|
T Consensus 38 ~~~~~~~~i~~~~~-~~~~~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~-----------~~~~~~~v 105 (132)
T PF00004_consen 38 YAGDSEQKIRDFFK-KAKKSAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPS-----------SKNSRVIV 105 (132)
T ss_dssp STTHHHHHHHHHHH-HHHHTSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTT-----------TTSSSEEE
T ss_pred cccccccccccccc-cccccccceeeeeccchhcccccccccccccccccceeeecccccc-----------ccccccee
Confidence 33444559999999 998887 9999999999999875 5778888888532 22456888
Q ss_pred Ee-------eCHhHH-hccccEEEeCC
Q psy450 93 VL-------IRKQIQ-KLFLKTINVLP 111 (478)
Q Consensus 93 ia-------ld~al~-rRf~~~i~~~~ 111 (478)
|+ +||++. +||++.|++|+
T Consensus 106 I~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 106 IATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp EEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred EEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 88 999999 89999999974
No 271
>PRK15115 response regulator GlrR; Provisional
Probab=98.46 E-value=7.2e-06 Score=84.95 Aligned_cols=149 Identities=24% Similarity=0.353 Sum_probs=82.3
Q ss_pred cccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhhh-----cchH
Q psy450 208 DIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKYI-----GQSE 279 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~~-----g~~~ 279 (478)
.++|.......+.+....... ....++++|++|||||++|+++.+.. +.+|+.++|..+..... |...
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~----~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~ 210 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ----SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHAR 210 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc----CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCc
Confidence 355555444444333333221 14459999999999999999998765 47899999976532211 1100
Q ss_pred H-------HHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC-----C----CCCeEEEE
Q psy450 280 E-------NIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH-----T----SQDVFILG 343 (478)
Q Consensus 280 ~-------~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~----~~~v~vI~ 343 (478)
. .....+.. ....+|||||+|.|.. .....|+..++.-. . ..++.+|+
T Consensus 211 ~~~~~~~~~~~g~~~~---a~~gtl~l~~i~~l~~-------------~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~ 274 (444)
T PRK15115 211 GAFTGAVSNREGLFQA---AEGGTLFLDEIGDMPA-------------PLQVKLLRVLQERKVRPLGSNRDIDIDVRIIS 274 (444)
T ss_pred CCCCCCccCCCCcEEE---CCCCEEEEEccccCCH-------------HHHHHHHHHHhhCCEEeCCCCceeeeeEEEEE
Confidence 0 00011222 2245999999999973 34455555554211 1 12578888
Q ss_pred EcCCCCCCCccccCCCCCCe-------EEEeCCCCCHHHHHHH
Q psy450 344 ATNRVDLLDPAILRPGRLDK-------SLYVGLYEDRISQLGV 379 (478)
Q Consensus 344 ttn~~~~ld~~l~~~~Rf~~-------~i~~~~pp~~~~r~~i 379 (478)
||+.. ++..+.+ |+|.. .+.+.+||-++.+.+|
T Consensus 275 ~~~~~--l~~~~~~-~~f~~~l~~~l~~~~i~lPpLr~R~eDi 314 (444)
T PRK15115 275 ATHRD--LPKAMAR-GEFREDLYYRLNVVSLKIPALAERTEDI 314 (444)
T ss_pred eCCCC--HHHHHHc-CCccHHHHHhhceeeecCCChHhccccH
Confidence 88863 3333222 45422 3344556655544444
No 272
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=1.5e-06 Score=83.16 Aligned_cols=117 Identities=16% Similarity=0.117 Sum_probs=81.7
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHHhCCc----------------EEEEechhhhhhhhcchHHHHHHHHHHhH----
Q psy450 231 GLKRSGLLLYGPPGTGKTLIAKAVATECRMN----------------FLAVKGPELLNKYIGQSEENIRNVFLKAR---- 290 (478)
Q Consensus 231 ~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~----------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~---- 290 (478)
+.-++.+||+||+|+||+.+|.++|..+-+. ++.+.... .+. .-.-..++++...+.
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~--~I~idqiR~l~~~~~~~p~ 92 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGR--LHSIETPRAIKKQIWIHPY 92 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCC--cCcHHHHHHHHHHHhhCcc
Confidence 3347889999999999999999999887432 22221100 000 012344555555443
Q ss_pred hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeC
Q psy450 291 SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVG 368 (478)
Q Consensus 291 ~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~ 368 (478)
.+...|++||++|.+. ....+.|++.++. +..++++|..|+.++.+.|.+++ |+. .+.++
T Consensus 93 e~~~kv~ii~~ad~mt-------------~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~ 152 (290)
T PRK05917 93 ESPYKIYIIHEADRMT-------------LDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIP 152 (290)
T ss_pred CCCceEEEEechhhcC-------------HHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEcc
Confidence 2334699999999997 4678999999995 56678888889999999999999 884 44554
No 273
>KOG2228|consensus
Probab=98.42 E-value=2.3e-06 Score=81.43 Aligned_cols=164 Identities=18% Similarity=0.322 Sum_probs=105.3
Q ss_pred cccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHH---HHHhCCcEEEEechhhh-----------
Q psy450 206 WEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAV---ATECRMNFLAVKGPELL----------- 271 (478)
Q Consensus 206 ~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~l---a~~~~~~~~~v~~~~l~----------- 271 (478)
.-.+.|..+..+.+.+.+..-..... .+++++.||.|+|||.+.... +++.|.+++.+......
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gE--snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGE--SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcC--CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 34567888888888877766533222 567999999999999976554 33667777665432111
Q ss_pred ----------hhhhcchHHHHHHHHHHhHhC-----CCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCC
Q psy450 272 ----------NKYIGQSEENIRNVFLKARSA-----APCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTS 336 (478)
Q Consensus 272 ----------~~~~g~~~~~~~~~~~~a~~~-----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 336 (478)
.+..|....++..++...+.. .+.|.++||||..++.. -+..++.++..-+ ...
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~---------rQtllYnlfDisq--s~r 169 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS---------RQTLLYNLFDISQ--SAR 169 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch---------hhHHHHHHHHHHh--hcC
Confidence 112344444555555544332 23456688999988642 1345555554433 235
Q ss_pred CCeEEEEEcCCCCC---CCccccCCCCCCeE-EEeCCCCCHHHHHHHHHHHH
Q psy450 337 QDVFILGATNRVDL---LDPAILRPGRLDKS-LYVGLYEDRISQLGVLKAVV 384 (478)
Q Consensus 337 ~~v~vI~ttn~~~~---ld~~l~~~~Rf~~~-i~~~~pp~~~~r~~il~~~~ 384 (478)
.+++||+.|.+.+. +...+.+ ||... |+++.+....+..++++..+
T Consensus 170 ~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 170 APICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred CCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 68999999988754 5677788 99977 67766556778888888766
No 274
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.39 E-value=3.5e-06 Score=87.78 Aligned_cols=195 Identities=17% Similarity=0.238 Sum_probs=101.9
Q ss_pred ccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhh-----hcch
Q psy450 207 EDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKY-----IGQS 278 (478)
Q Consensus 207 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~-----~g~~ 278 (478)
..++|.......+.+.+...... ...+++.|++||||+++|+++.... +.+|+.++|..+.... .|..
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~----~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~ 209 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRS----DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHE 209 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCc----CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCC
Confidence 34677766666666555443211 4569999999999999999998765 5689999997653221 1111
Q ss_pred HHHHHHH----HHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC---------CCCCeEEEEEc
Q psy450 279 EENIRNV----FLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH---------TSQDVFILGAT 345 (478)
Q Consensus 279 ~~~~~~~----~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~vI~tt 345 (478)
....... .........+.|||||++.|.. .....|+..++.-. ...++.+|++|
T Consensus 210 ~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~-------------~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~ 276 (463)
T TIGR01818 210 KGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL-------------DAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAAT 276 (463)
T ss_pred CCCCCCcccCCCCcEEECCCCeEEEEchhhCCH-------------HHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeC
Confidence 0000000 0001122346899999999973 33445555443211 11256788888
Q ss_pred CCCC-------CCCccccCCCCCCeEEEeCCCCCHH---HHHHHHHHHHhcC----CCC-CCCCHHHHHHhcCCCCCH--
Q psy450 346 NRVD-------LLDPAILRPGRLDKSLYVGLYEDRI---SQLGVLKAVVRKF----KLS-DDVSLDSLVHHFPSQMSG-- 408 (478)
Q Consensus 346 n~~~-------~ld~~l~~~~Rf~~~i~~~~pp~~~---~r~~il~~~~~~~----~~~-~~~~~~~la~~~~~~~sg-- 408 (478)
+..- .+.+.+.. |+. .+.+.+||-++ +...++..+++.. +.. ...+-+.+.....-++.|
T Consensus 277 ~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv 353 (463)
T TIGR01818 277 HQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNV 353 (463)
T ss_pred CCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChH
Confidence 7642 23334433 443 23444455443 3334444444322 111 122222222222123433
Q ss_pred HHHHHHHHHHHHH
Q psy450 409 ADIYSICSNAWTR 421 (478)
Q Consensus 409 ~di~~l~~~a~~~ 421 (478)
++|++++..|+..
T Consensus 354 reL~~~~~~~~~~ 366 (463)
T TIGR01818 354 RQLENLCRWLTVM 366 (463)
T ss_pred HHHHHHHHHHHHh
Confidence 6777777776643
No 275
>KOG1970|consensus
Probab=98.37 E-value=2.3e-05 Score=79.36 Aligned_cols=68 Identities=24% Similarity=0.280 Sum_probs=47.9
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhh-hhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEe
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGV-NRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVK 266 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~-~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~ 266 (478)
..+.+...+++.-..+-...++..+... ...++...+-+||+||+||||||.++.+++++|..+..-.
T Consensus 74 eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 74 EKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred HhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 3445566677766655555566555522 2233444667889999999999999999999998887654
No 276
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.33 E-value=3.5e-06 Score=88.81 Aligned_cols=189 Identities=14% Similarity=0.083 Sum_probs=108.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhCC--cEEEEechhhhhhhhcch--HHHH--------HHHHHHhHhCCCeEEEEcCC
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECRM--NFLAVKGPELLNKYIGQS--EENI--------RNVFLKARSAAPCVVFFDEL 302 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~~--~~~~v~~~~l~~~~~g~~--~~~~--------~~~~~~a~~~~p~il~iDei 302 (478)
.|++|.|++|+|||+++++++..+.. +|..+...--....+|.. +..+ ..++..| ...|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A---h~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA---DGGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec---cCCEEEecCc
Confidence 57999999999999999999998854 666554322112222221 1111 1122222 1259999999
Q ss_pred ccccCCCCCCCCCchhHHHHHHHHHHhhcCCC-----------CCCCeEEEEEcCCC---CCCCccccCCCCCCeEEEeC
Q psy450 303 DSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH-----------TSQDVFILGATNRV---DLLDPAILRPGRLDKSLYVG 368 (478)
Q Consensus 303 d~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~vI~ttn~~---~~ld~~l~~~~Rf~~~i~~~ 368 (478)
..+. ..++..|+..|+.-. ...++++|++-|.. +.++++++. ||+..+.+.
T Consensus 103 n~~~-------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~ 167 (584)
T PRK13406 103 ERLE-------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLD 167 (584)
T ss_pred ccCC-------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcC
Confidence 8886 467888888876421 13468888874432 348889999 999999998
Q ss_pred CCCCHHHH------HHHHHHH--HhcCCCCCCCCHHHHHHhc-CCCC-CHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Q psy450 369 LYEDRISQ------LGVLKAV--VRKFKLSDDVSLDSLVHHF-PSQM-SGADIYSICSNAWTRAIRRIITSAPQVKSAPV 438 (478)
Q Consensus 369 ~pp~~~~r------~~il~~~--~~~~~~~~~~~~~~la~~~-~~~~-sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~ 438 (478)
.|+..+.+ .+|.... +.+..++... +..++..+ ..|. +.+--..+++-|...|.-+ ...
T Consensus 168 ~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~-l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~----------Gr~ 236 (584)
T PRK13406 168 GLALRDAREIPIDADDIAAARARLPAVGPPPEA-IAALCAAAAALGIASLRAPLLALRAARAAAALA----------GRT 236 (584)
T ss_pred CCChHHhcccCCCHHHHHHHHHHHccCCCCHHH-HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHc----------CCC
Confidence 75433322 1233222 2222222211 22222211 0133 4444444555555444433 355
Q ss_pred cccHHHHHhchhcc
Q psy450 439 IVTMDDFLGACSLA 452 (478)
Q Consensus 439 ~it~~d~~~A~~~~ 452 (478)
.|+.+|+.+|+...
T Consensus 237 ~V~~~dv~~Aa~lv 250 (584)
T PRK13406 237 AVEEEDLALAARLV 250 (584)
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999995543
No 277
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.32 E-value=8.1e-06 Score=84.48 Aligned_cols=148 Identities=23% Similarity=0.340 Sum_probs=81.9
Q ss_pred ccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhh-----hcchHH
Q psy450 209 IGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKY-----IGQSEE 280 (478)
Q Consensus 209 i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~-----~g~~~~ 280 (478)
+.|.......+...+.... .....++++|.+||||+++|+++.... +.+|+.++|..+.... .|....
T Consensus 141 lig~s~~~~~~~~~i~~~~----~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~ 216 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVA----PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKG 216 (441)
T ss_pred eEecCHHHHHHHHHHhhcc----CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCC
Confidence 4555555444444333222 114569999999999999999997654 4689999997653221 111000
Q ss_pred HH-------HHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC---------CCCeEEEEE
Q psy450 281 NI-------RNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT---------SQDVFILGA 344 (478)
Q Consensus 281 ~~-------~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---------~~~v~vI~t 344 (478)
.. ...+ .....++|||||++.|.+ .....|+..++.-.. ..++.+|++
T Consensus 217 ~~~~~~~~~~g~~---~~a~~gtl~ldei~~l~~-------------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~ 280 (441)
T PRK10365 217 AFTGADKRREGRF---VEADGGTLFLDEIGDISP-------------MMQVRLLRAIQEREVQRVGSNQTISVDVRLIAA 280 (441)
T ss_pred CcCCCCcCCCCce---eECCCCEEEEeccccCCH-------------HHHHHHHHHHccCcEEeCCCCceeeeceEEEEe
Confidence 00 0011 122356999999999973 344555555543210 124678888
Q ss_pred cCCCCCCCccccCCCCCCe-------EEEeCCCCCHHHHHHH
Q psy450 345 TNRVDLLDPAILRPGRLDK-------SLYVGLYEDRISQLGV 379 (478)
Q Consensus 345 tn~~~~ld~~l~~~~Rf~~-------~i~~~~pp~~~~r~~i 379 (478)
|+.+- .....+|+|.. .+.+.+||-++.+.+|
T Consensus 281 t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di 319 (441)
T PRK10365 281 THRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDI 319 (441)
T ss_pred CCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhH
Confidence 77642 12222345532 3455556666544433
No 278
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.31 E-value=2.6e-06 Score=81.67 Aligned_cols=138 Identities=18% Similarity=0.301 Sum_probs=76.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCc---EEEEechhhhhhhhcchHHHHHHHHHHh-----------HhCCCeEEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMN---FLAVKGPELLNKYIGQSEENIRNVFLKA-----------RSAAPCVVFF 299 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~---~~~v~~~~l~~~~~g~~~~~~~~~~~~a-----------~~~~p~il~i 299 (478)
..++||+||+|||||++++.+-..+... ...++++... +...+..+++.. ..+...|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 5579999999999999999887766432 2334443221 222222222211 1123479999
Q ss_pred cCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC--------CCCeEEEEEcCCCC---CCCccccCCCCCCeEEEeC
Q psy450 300 DELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT--------SQDVFILGATNRVD---LLDPAILRPGRLDKSLYVG 368 (478)
Q Consensus 300 Deid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--------~~~v~vI~ttn~~~---~ld~~l~~~~Rf~~~i~~~ 368 (478)
||+..-.+...+ +...-+++.+++..- |+-+ -.++.+|++.+.+. .+++.+.| .| ..+.++
T Consensus 107 DDlN~p~~d~yg----tq~~iElLRQ~i~~~-g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~ 178 (272)
T PF12775_consen 107 DDLNMPQPDKYG----TQPPIELLRQLIDYG-GFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIP 178 (272)
T ss_dssp ETTT-S---TTS------HHHHHHHHHHHCS-EEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE--
T ss_pred cccCCCCCCCCC----CcCHHHHHHHHHHhc-CcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEec
Confidence 999877654321 111234555555431 2111 12577888887542 36777886 55 577787
Q ss_pred CCCCHHHHHHHHHHHHhc
Q psy450 369 LYEDRISQLGVLKAVVRK 386 (478)
Q Consensus 369 ~pp~~~~r~~il~~~~~~ 386 (478)
. |+.+....|+..++..
T Consensus 179 ~-p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 179 Y-PSDESLNTIFSSILQS 195 (272)
T ss_dssp ---TCCHHHHHHHHHHHH
T ss_pred C-CChHHHHHHHHHHHhh
Confidence 6 6888888888776653
No 279
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.29 E-value=3.3e-05 Score=80.05 Aligned_cols=205 Identities=11% Similarity=0.166 Sum_probs=125.2
Q ss_pred CCCeEEEecccccccch-hhHhhhccccccccccccchhhhccCCCcEEEEe---------eCHhHHhccc--cEEEeCC
Q psy450 44 NLDIFKYDEVNYLCNVK-YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL---------IRKQIQKLFL--KTINVLP 111 (478)
Q Consensus 44 ~p~ilfiDe~d~i~~~r-~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via---------ld~al~rRf~--~~i~~~~ 111 (478)
++++|+|||++.+.+++ ....++..++.+. ..+..+++.+ +++.+++||. ..+.+..
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~-----------~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~ 279 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALH-----------EAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEP 279 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHH-----------HCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecC
Confidence 58899999999998765 2334555555321 2233354444 6788889996 4899999
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhh
Q psy450 112 LTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQSR 191 (478)
Q Consensus 112 P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~~ 191 (478)
||.++|.+|++...... .+..+.+.++.|+....| +...+..++......+.. .+.+++.+.+..++..+...
T Consensus 280 pd~~~r~~il~~~~~~~--~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~----~~~~it~~~~~~~l~~~~~~ 352 (450)
T PRK00149 280 PDLETRIAILKKKAEEE--GIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASL----TGKPITLELAKEALKDLLAA 352 (450)
T ss_pred CCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHh----hCCCCCHHHHHHHHHHhhcc
Confidence 99999999999999775 445566667999988764 556666666665554432 35679999888888876311
Q ss_pred cccCCCCCCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh
Q psy450 192 YSDQLDAPSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL 271 (478)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~ 271 (478)
.. .-+..+.+.+.+.+..... .. =|.|+.-.-+-..+|.+|-.+-..+...+..++.
T Consensus 353 ~~--------------~~~~~~~i~~~v~~~~~i~-------~~--~l~~~~R~~~~~~aR~iamyl~~~~~~~s~~~Ig 409 (450)
T PRK00149 353 QK--------------KKITIENIQKVVAEYYNIK-------VS--DLKSKSRTRNIARPRQIAMYLAKELTDLSLPEIG 409 (450)
T ss_pred CC--------------CCCCHHHHHHHHHHHcCCC-------HH--HHhCCCCCcccChHHHHHHHHHHHhcCCCHHHHH
Confidence 10 0122344444444332211 11 1234444444456777766665555555555655
Q ss_pred hhhhcchHHHHHHHHHHh
Q psy450 272 NKYIGQSEENIRNVFLKA 289 (478)
Q Consensus 272 ~~~~g~~~~~~~~~~~~a 289 (478)
..+-|.....+....++.
T Consensus 410 ~~fg~rdhstV~~a~~~i 427 (450)
T PRK00149 410 RAFGGRDHTTVLHAVRKI 427 (450)
T ss_pred HHcCCCCHhHHHHHHHHH
Confidence 444345555555444443
No 280
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.27 E-value=6.5e-05 Score=78.86 Aligned_cols=206 Identities=14% Similarity=0.135 Sum_probs=124.7
Q ss_pred cCCCeEEEecccccccch-hhHhhhccccccccccccchhhhccCCCcEEEEe---------eCHhHHhccc--cEEEeC
Q psy450 43 YNLDIFKYDEVNYLCNVK-YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL---------IRKQIQKLFL--KTINVL 110 (478)
Q Consensus 43 ~~p~ilfiDe~d~i~~~r-~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via---------ld~al~rRf~--~~i~~~ 110 (478)
.++++|+|||++.+.++. ....++..++.+. +.+..|+|.+ +++.|++||. ..+.+.
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~-----------e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~ 444 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLH-----------NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQ 444 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHH-----------hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcC
Confidence 358999999999998865 2334455555431 2344566655 7899999995 566999
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhh
Q psy450 111 PLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQS 190 (478)
Q Consensus 111 ~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~ 190 (478)
.||.+.|.+||+...... .+..+.+.+++|+.+.++ +...++.++..-...+.. .+.+++.+.....++.+.+
T Consensus 445 ~PD~EtR~aIL~kka~~r--~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~----~~~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 445 PPELETRIAILRKKAVQE--QLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASL----NRQPVDLGLTEIVLRDLIP 517 (617)
T ss_pred CCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHh----hCCCCCHHHHHHHHHHhhc
Confidence 999999999999999876 456667778999998764 456666666655444432 3566888888777776543
Q ss_pred hcccCCCCCCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhh
Q psy450 191 RYSDQLDAPSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPEL 270 (478)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l 270 (478)
... ...+..+.+++.+.+.+..... =|.|..-.-+-..+|.+|-.+-..+...+..++
T Consensus 518 ~~~-------------~~~it~d~I~~~Va~~f~v~~~---------dl~s~~R~~~i~~aRqiAMYL~r~lt~~Sl~~I 575 (617)
T PRK14086 518 EDS-------------APEITAAAIMAATADYFGLTVE---------DLCGTSRSRVLVTARQIAMYLCRELTDLSLPKI 575 (617)
T ss_pred ccc-------------CCcCCHHHHHHHHHHHhCCCHH---------HHhCCCCCcccchHHHHHHHHHHHHcCCCHHHH
Confidence 210 0112334444444443321111 123444444455677776665444444455554
Q ss_pred hhhhhcchHHHHHHHHHHh
Q psy450 271 LNKYIGQSEENIRNVFLKA 289 (478)
Q Consensus 271 ~~~~~g~~~~~~~~~~~~a 289 (478)
... +|.....+....++.
T Consensus 576 G~~-FgRdHSTV~~A~~kI 593 (617)
T PRK14086 576 GQQ-FGRDHTTVMHADRKI 593 (617)
T ss_pred HHH-hCCChhHHHHHHHHH
Confidence 433 344444444444443
No 281
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=8.6e-06 Score=76.36 Aligned_cols=113 Identities=15% Similarity=0.109 Sum_probs=79.5
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCc----------------------EEEEechhhhhhhhcchHHHHHHHHHHhH-
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMN----------------------FLAVKGPELLNKYIGQSEENIRNVFLKAR- 290 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~----------------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~- 290 (478)
+..+||+||+|+||..+|.++|..+-+. +..+.... ..-....++++.+...
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-----~~I~id~ir~l~~~l~~ 81 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-----NPIKKEDALSIINKLNR 81 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-----ccCCHHHHHHHHHHHcc
Confidence 7789999999999999999999876321 11111100 0112334444444332
Q ss_pred ----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEE
Q psy450 291 ----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLY 366 (478)
Q Consensus 291 ----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~ 366 (478)
.+..-|++|+++|.+. ....+.||+.++. +..++++|.+|+.++.+.+.+++ |+.. +.
T Consensus 82 ~s~e~~~~KV~II~~ae~m~-------------~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq~-~~ 143 (261)
T PRK05818 82 PSVESNGKKIYIIYGIEKLN-------------KQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCVQ-YV 143 (261)
T ss_pred CchhcCCCEEEEeccHhhhC-------------HHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--heee-ee
Confidence 1235799999999997 4678999999995 56678889999999999999999 9854 44
Q ss_pred eCC
Q psy450 367 VGL 369 (478)
Q Consensus 367 ~~~ 369 (478)
++.
T Consensus 144 ~~~ 146 (261)
T PRK05818 144 VLS 146 (261)
T ss_pred cCC
Confidence 543
No 282
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.26 E-value=7e-07 Score=94.23 Aligned_cols=160 Identities=22% Similarity=0.242 Sum_probs=92.7
Q ss_pred ccccCcHHHHHHHHHHHHhh-hhh--CCCC---CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHH
Q psy450 207 EDIGGLSKLKAEILSTFRGV-NRT--SGLK---RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEE 280 (478)
Q Consensus 207 ~~i~g~~~~k~~l~~~~~~~-~~~--~~~~---~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~ 280 (478)
-.|.|++.+|+.+.-.+-.. ... .|.. --|+||.|.||||||.+.+.+++.+...++. ++. .+...|.+..
T Consensus 286 PsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vyt-sgk--gss~~GLTAa 362 (682)
T COG1241 286 PSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYT-SGK--GSSAAGLTAA 362 (682)
T ss_pred ccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEE-ccc--cccccCceeE
Confidence 35789999998875433222 111 1111 3579999999999999999999888665443 211 0111222222
Q ss_pred HHHHHH--H---Hh---HhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC-----------CCCCeEE
Q psy450 281 NIRNVF--L---KA---RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH-----------TSQDVFI 341 (478)
Q Consensus 281 ~~~~~~--~---~a---~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~v 341 (478)
.+++-. + .+ ....++|.+|||+|.+.. .....+...|+.-. -+.+.-|
T Consensus 363 v~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~-------------~dr~aihEaMEQQtIsIaKAGI~atLnARcsv 429 (682)
T COG1241 363 VVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNE-------------EDRVAIHEAMEQQTISIAKAGITATLNARCSV 429 (682)
T ss_pred EEEccCCCeEEEeCCEEEEecCCEEEEEeccCCCh-------------HHHHHHHHHHHhcEeeecccceeeecchhhhh
Confidence 222211 0 11 123457999999999862 23344444444211 1234567
Q ss_pred EEEcCCCC-------------CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHH
Q psy450 342 LGATNRVD-------------LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVV 384 (478)
Q Consensus 342 I~ttn~~~-------------~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~ 384 (478)
+|++|... .++++|++ |||..+.+..-|+.+.-..+..+.+
T Consensus 430 LAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil 483 (682)
T COG1241 430 LAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHIL 483 (682)
T ss_pred hhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHH
Confidence 88888753 37889999 9998887766445543334444433
No 283
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=1.3e-05 Score=76.96 Aligned_cols=129 Identities=15% Similarity=0.168 Sum_probs=83.7
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHHhCCcEE-E-Eec--------------hhhhhhh-hcc--hHHHHHHHHHHhH-
Q psy450 231 GLKRSGLLLYGPPGTGKTLIAKAVATECRMNFL-A-VKG--------------PELLNKY-IGQ--SEENIRNVFLKAR- 290 (478)
Q Consensus 231 ~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~-~-v~~--------------~~l~~~~-~g~--~~~~~~~~~~~a~- 290 (478)
+..+..+||+|| +||+++|+.+|..+-+.-- . -.| +++.--. .|. .-..++++...+.
T Consensus 21 ~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~ 98 (290)
T PRK07276 21 DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQ 98 (290)
T ss_pred CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhh
Confidence 333788999996 6899999999987632110 0 000 1110000 011 2345666555443
Q ss_pred ---hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEe
Q psy450 291 ---SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYV 367 (478)
Q Consensus 291 ---~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~ 367 (478)
.+...|++||++|.+. ....|.|++.++. +..++++|.+|+.++.+-|.+++ |+ ..+.|
T Consensus 99 ~p~~~~~kV~II~~ad~m~-------------~~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f 160 (290)
T PRK07276 99 SGYEGKQQVFIIKDADKMH-------------VNAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RT-QIFHF 160 (290)
T ss_pred CcccCCcEEEEeehhhhcC-------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cc-eeeeC
Confidence 2334699999999997 4577999999995 45568888889999999999999 98 46666
Q ss_pred CCCCCHHHHHHHHH
Q psy450 368 GLYEDRISQLGVLK 381 (478)
Q Consensus 368 ~~pp~~~~r~~il~ 381 (478)
+ +..+...+++.
T Consensus 161 ~--~~~~~~~~~L~ 172 (290)
T PRK07276 161 P--KNEAYLIQLLE 172 (290)
T ss_pred C--CcHHHHHHHHH
Confidence 4 34554444443
No 284
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.24 E-value=1.6e-05 Score=76.37 Aligned_cols=128 Identities=26% Similarity=0.366 Sum_probs=85.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh----
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK---- 273 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~---- 273 (478)
.+...|+.+++.+...+.+.+........ ...+|++|.+||||-.+|+++.... ..||+.+||+.+-..
T Consensus 198 ~~~~~F~~~v~~S~~mk~~v~qA~k~Aml----DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEs 273 (511)
T COG3283 198 QDVSGFEQIVAVSPKMKHVVEQAQKLAML----DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAES 273 (511)
T ss_pred ccccchHHHhhccHHHHHHHHHHHHhhcc----CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHH
Confidence 35667888888877766665544333211 2349999999999999999986554 679999999766432
Q ss_pred -hhcchH--HHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC---------CCCeEE
Q psy450 274 -YIGQSE--ENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT---------SQDVFI 341 (478)
Q Consensus 274 -~~g~~~--~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---------~~~v~v 341 (478)
.+|... +....+|+.|..+ .+|+|||..+.+ ++...|+..+..-.- .-+|.|
T Consensus 274 ElFG~apg~~gk~GffE~AngG---TVlLDeIgEmSp-------------~lQaKLLRFL~DGtFRRVGee~Ev~vdVRV 337 (511)
T COG3283 274 ELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMSP-------------RLQAKLLRFLNDGTFRRVGEDHEVHVDVRV 337 (511)
T ss_pred HHhcCCCCCCCccchhhhccCC---eEEeehhhhcCH-------------HHHHHHHHHhcCCceeecCCcceEEEEEEE
Confidence 222222 3344677776555 899999988874 455666666542211 125889
Q ss_pred EEEcCCC
Q psy450 342 LGATNRV 348 (478)
Q Consensus 342 I~ttn~~ 348 (478)
|++|..+
T Consensus 338 Icatq~n 344 (511)
T COG3283 338 ICATQVN 344 (511)
T ss_pred Eeccccc
Confidence 9999875
No 285
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.22 E-value=3.5e-06 Score=83.87 Aligned_cols=100 Identities=20% Similarity=0.318 Sum_probs=58.9
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHHhCC-cEEEEechhhhhh-------hhcchHHHHHHHHHHhHhCCCeEEEEcCCcc
Q psy450 233 KRSGLLLYGPPGTGKTLIAKAVATECRM-NFLAVKGPELLNK-------YIGQSEENIRNVFLKARSAAPCVVFFDELDS 304 (478)
Q Consensus 233 ~~~~iLl~Gp~GtGKT~la~~la~~~~~-~~~~v~~~~l~~~-------~~g~~~~~~~~~~~~a~~~~p~il~iDeid~ 304 (478)
.++|++|||++|+|||+|.-.+.+.+.. .-..+...++... ..+ ....+..+.+..... ..+|+|||++.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~-~~~~l~~va~~l~~~-~~lLcfDEF~V 138 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRG-QDDPLPQVADELAKE-SRLLCFDEFQV 138 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhC-CCccHHHHHHHHHhc-CCEEEEeeeec
Confidence 3899999999999999999999888754 1111111122111 111 111223333333322 24999999986
Q ss_pred ccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q psy450 305 LAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRV 348 (478)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~ 348 (478)
-... ...++..|+..+= ..++++|+|+|++
T Consensus 139 ~Dia----------DAmil~rLf~~l~----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 139 TDIA----------DAMILKRLFEALF----KRGVVLVATSNRP 168 (362)
T ss_pred cchh----------HHHHHHHHHHHHH----HCCCEEEecCCCC
Confidence 5421 1245555555442 3578999999985
No 286
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=3.5e-05 Score=74.68 Aligned_cols=124 Identities=15% Similarity=0.184 Sum_probs=84.6
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCC-------------cEEEEechhhhhhhhcchHHHHHHHHHHhH-----hCCCe
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRM-------------NFLAVKGPELLNKYIGQSEENIRNVFLKAR-----SAAPC 295 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~-------------~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~-----~~~p~ 295 (478)
++.+||+|+.|.||+.+++.+++.+-+ .+..++... . .-....++.+.+... .+..-
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g---~--~i~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD---K--DLSKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC---C--cCCHHHHHHHHHHhccCCcccCCce
Confidence 667899999999999999999988722 122232100 0 112234555555442 13557
Q ss_pred EEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHH
Q psy450 296 VVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRIS 375 (478)
Q Consensus 296 il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~ 375 (478)
|++||++|.+. ....+.|++.++. +...+++|.+|+.++.+-+.+++ |+ ..+.+.. ++.++
T Consensus 93 vvII~~~e~m~-------------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~-l~~~~ 153 (299)
T PRK07132 93 ILIIKNIEKTS-------------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKE-PDQQK 153 (299)
T ss_pred EEEEecccccC-------------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCC-CCHHH
Confidence 99999998886 4567899999996 45567777777788999999998 87 4567764 56666
Q ss_pred HHHHHH
Q psy450 376 QLGVLK 381 (478)
Q Consensus 376 r~~il~ 381 (478)
...++.
T Consensus 154 l~~~l~ 159 (299)
T PRK07132 154 ILAKLL 159 (299)
T ss_pred HHHHHH
Confidence 555554
No 287
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.20 E-value=4.4e-05 Score=77.79 Aligned_cols=131 Identities=15% Similarity=0.182 Sum_probs=88.7
Q ss_pred cCCCeEEEeccccccc---chhhHhhhccccccccccccchhhhccCCCcEEEEe----------eCHhHHhccc-cEEE
Q psy450 43 YNLDIFKYDEVNYLCN---VKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL----------IRKQIQKLFL-KTIN 108 (478)
Q Consensus 43 ~~p~ilfiDe~d~i~~---~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via----------ld~al~rRf~-~~i~ 108 (478)
..+.||+|||+|.+.. ...++.++..++.. ...++.+|+ +|+.+.+||. ..|.
T Consensus 137 ~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-------------~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~ 203 (394)
T PRK00411 137 DRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-------------PGARIGVIGISSDLTFLYILDPRVKSVFRPEEIY 203 (394)
T ss_pred CCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-------------CCCeEEEEEEECCcchhhhcCHHHHhcCCcceee
Confidence 4679999999999982 23566666665532 122444444 6788888774 6789
Q ss_pred eCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q psy450 109 VLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFER--HDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYD 186 (478)
Q Consensus 109 ~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~--~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~ 186 (478)
|+.++.++..+|++..+..-...-..+.+.++.+++.+.+.+| .....+++.|+..+..+ +...|+.+|+..|+.
T Consensus 204 f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~---~~~~I~~~~v~~a~~ 280 (394)
T PRK00411 204 FPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE---GSRKVTEEDVRKAYE 280 (394)
T ss_pred cCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc---CCCCcCHHHHHHHHH
Confidence 9999999999999998854211112344555888888755332 33346666666665433 457899999999998
Q ss_pred Hhh
Q psy450 187 DLQ 189 (478)
Q Consensus 187 ~~~ 189 (478)
.+.
T Consensus 281 ~~~ 283 (394)
T PRK00411 281 KSE 283 (394)
T ss_pred HHH
Confidence 774
No 288
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.19 E-value=7.6e-06 Score=71.86 Aligned_cols=109 Identities=18% Similarity=0.261 Sum_probs=61.4
Q ss_pred EEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhh----------------------hcc--hHHHHHHHHHHh
Q psy450 237 LLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKY----------------------IGQ--SEENIRNVFLKA 289 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~----------------------~g~--~~~~~~~~~~~a 289 (478)
++++||||+|||+++..++... +.++++++........ ... ...........+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998877 5667776654332110 000 111112233445
Q ss_pred HhCCCeEEEEcCCccccCCCCC-CCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC
Q psy450 290 RSAAPCVVFFDELDSLAPRRGQ-EDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349 (478)
Q Consensus 290 ~~~~p~il~iDeid~l~~~~~~-~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 349 (478)
....|.+++|||+..+...... .........+.+..+..... ..++.+|++++.+.
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 6677889999999988643210 00111122333444443332 23566666666554
No 289
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.18 E-value=1.7e-05 Score=73.96 Aligned_cols=65 Identities=25% Similarity=0.334 Sum_probs=49.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCcccc
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLA 306 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~ 306 (478)
.+-.+.||+|||||.+++.+|+.+|.+++.++|++-. ....+..+|.-+... .+-+++||++.+.
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~------~~~~l~ril~G~~~~-GaW~cfdefnrl~ 97 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM------DYQSLSRILKGLAQS-GAWLCFDEFNRLS 97 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSS
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc------cHHHHHHHHHHHhhc-Cchhhhhhhhhhh
Confidence 3467899999999999999999999999999997643 445566666554433 2689999999987
No 290
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.18 E-value=5.9e-05 Score=77.12 Aligned_cols=127 Identities=12% Similarity=0.218 Sum_probs=90.5
Q ss_pred CCCeEEEecccccccch-hhHhhhccccccccccccchhhhccCCCcEEEEe---------eCHhHHhcccc--EEEeCC
Q psy450 44 NLDIFKYDEVNYLCNVK-YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL---------IRKQIQKLFLK--TINVLP 111 (478)
Q Consensus 44 ~p~ilfiDe~d~i~~~r-~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via---------ld~al~rRf~~--~i~~~~ 111 (478)
.+++|+|||++.+.+++ ....++..++.+. ..+..+++.+ +++.+.+||.. .+.|+.
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~-----------~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~ 267 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALH-----------ENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEP 267 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHH-----------HCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCC
Confidence 47899999999998864 2334555555321 1223344444 67888899974 799999
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHh
Q psy450 112 LTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDL 188 (478)
Q Consensus 112 P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~ 188 (478)
||.++|.+|++..+... .+..+.+.++.+|....| +..+++.++......+.. .+.+++.+....++...
T Consensus 268 pd~~~r~~il~~~~~~~--~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~----~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 268 PDLETRLAILQKKAEEE--GLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASL----TGKPITLELAKEALKDL 337 (405)
T ss_pred CCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHh
Confidence 99999999999999876 445566667999987764 567777777766555432 34678888887777754
No 291
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.16 E-value=8.1e-05 Score=74.98 Aligned_cols=143 Identities=13% Similarity=0.147 Sum_probs=90.2
Q ss_pred hhhhHHHHhhh-hcCCCeEEEecccccccc--hhhHhhhccccccccccccchhhhccCCCcEEEEe----------eCH
Q psy450 31 HLNDIVKINLK-KYNLDIFKYDEVNYLCNV--KYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL----------IRK 97 (478)
Q Consensus 31 ~~~~if~~~a~-~~~p~ilfiDe~d~i~~~--r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via----------ld~ 97 (478)
.++.+++ ... ..++.||+|||+|.+.+. ..++.++...+.. ...+.++.+|+ +++
T Consensus 116 ~~~~l~~-~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~-----------~~~~~~v~lI~i~n~~~~~~~l~~ 183 (365)
T TIGR02928 116 VFRRLYK-ELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNG-----------DLDNAKVGVIGISNDLKFRENLDP 183 (365)
T ss_pred HHHHHHH-HHHhcCCeEEEEECchhhhccCCcHHHHhHhcccccc-----------CCCCCeEEEEEEECCcchHhhcCH
Confidence 3455665 443 345789999999999743 2455555442210 02224455555 788
Q ss_pred hHHhccc-cEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHH---HHhcCCCCHHHHHHHHHHHHHHHHHhhcCCC
Q psy450 98 QIQKLFL-KTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYL---SSVTSGFERHDLTCLVRLSVKNKMLKQGINK 173 (478)
Q Consensus 98 al~rRf~-~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~l---a~~t~G~s~~di~~l~~~a~~~a~~~~~~~~ 173 (478)
.+.+||. ..|.|+.++.++..+|++..+.....+...+.+.++.+ +..+.|.. .....+|+.|+..+..+ +.
T Consensus 184 ~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~-R~al~~l~~a~~~a~~~---~~ 259 (365)
T TIGR02928 184 RVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDA-RKAIDLLRVAGEIAERE---GA 259 (365)
T ss_pred HHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHc---CC
Confidence 8888985 67999999999999999998863111111233333444 44444533 34455677777666533 45
Q ss_pred CCCCHHHHHHHHHHhh
Q psy450 174 RDLQKEDFQQIYDDLQ 189 (478)
Q Consensus 174 ~~it~~d~~~a~~~~~ 189 (478)
..|+.+|+..|...+.
T Consensus 260 ~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 260 ERVTEDHVEKAQEKIE 275 (365)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6799999999988774
No 292
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.16 E-value=0.00027 Score=79.46 Aligned_cols=133 Identities=19% Similarity=0.256 Sum_probs=84.0
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhh------hhhhhcchHH---HHHHHHHHhHhCCCeEEEEcCCcccc
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPEL------LNKYIGQSEE---NIRNVFLKARSAAPCVVFFDELDSLA 306 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l------~~~~~g~~~~---~~~~~~~~a~~~~p~il~iDeid~l~ 306 (478)
.+|+.||+.+|||++...+|.+.|-.|+.++..+. ++.|+..... .-..++-.|.+.+ .-|++||+....
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLAp 968 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLAP 968 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccCc
Confidence 49999999999999999999999999999986443 3333322211 1223444443333 378899986543
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhhcC---------CCCCCCeEEEEEcCCCC------CCCccccCCCCCCeEEEeCCCC
Q psy450 307 PRRGQEDQSSGVMDRVVSQLLAEMDG---------VHTSQDVFILGATNRVD------LLDPAILRPGRLDKSLYVGLYE 371 (478)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~v~vI~ttn~~~------~ld~~l~~~~Rf~~~i~~~~pp 371 (478)
.. .-++++.|+.--.. +.+.+++.+++|-|.|. -+..+++. ||-...+...|
T Consensus 969 TD----------VLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFlE~hFddip- 1035 (4600)
T COG5271 969 TD----------VLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFLEMHFDDIP- 1035 (4600)
T ss_pred HH----------HHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhHhhhcccCc-
Confidence 11 12445555432111 12244688888888874 36778888 99655555554
Q ss_pred CHHHHHHHHHHH
Q psy450 372 DRISQLGVLKAV 383 (478)
Q Consensus 372 ~~~~r~~il~~~ 383 (478)
+.+.+.||...
T Consensus 1036 -edEle~ILh~r 1046 (4600)
T COG5271 1036 -EDELEEILHGR 1046 (4600)
T ss_pred -HHHHHHHHhcc
Confidence 55666777543
No 293
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.15 E-value=0.00013 Score=81.96 Aligned_cols=130 Identities=21% Similarity=0.232 Sum_probs=78.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh------hh-hcc--hHHH-HHHHHHHhHhCCCeEEEEcCCc
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN------KY-IGQ--SEEN-IRNVFLKARSAAPCVVFFDELD 303 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~------~~-~g~--~~~~-~~~~~~~a~~~~p~il~iDeid 303 (478)
.+++||-|.||+|||++..++|++.|..++.++.++-.. .+ .++ .+-. ...-|-.|.+.+ .-+++||+.
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEeehhh
Confidence 456999999999999999999999999999999765321 11 111 1111 122233343332 478899987
Q ss_pred cccCCCCCCCCCchhHHHHHHHHHHhhcCC------------CCCCCeEEEEEcCCC------CCCCccccCCCCCCeEE
Q psy450 304 SLAPRRGQEDQSSGVMDRVVSQLLAEMDGV------------HTSQDVFILGATNRV------DLLDPAILRPGRLDKSL 365 (478)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~------------~~~~~v~vI~ttn~~------~~ld~~l~~~~Rf~~~i 365 (478)
... +.++..|=..+|.- .-.+++.|+++-|.- ..+|..++. ||. ++
T Consensus 1622 LaS-------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV 1685 (4600)
T COG5271 1622 LAS-------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VV 1685 (4600)
T ss_pred hhH-------------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eE
Confidence 554 33444443333321 113467777777654 348888988 995 45
Q ss_pred EeCCCCCHHHHHHHHH
Q psy450 366 YVGLYEDRISQLGVLK 381 (478)
Q Consensus 366 ~~~~pp~~~~r~~il~ 381 (478)
++.. .+.++...|..
T Consensus 1686 ~~d~-lt~dDi~~Ia~ 1700 (4600)
T COG5271 1686 KMDG-LTTDDITHIAN 1700 (4600)
T ss_pred Eecc-cccchHHHHHH
Confidence 5554 24444444443
No 294
>PF05729 NACHT: NACHT domain
Probab=98.14 E-value=2.7e-05 Score=68.66 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=70.5
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCC--------c-EEEEechhhhhh------------hhcchHHHHHHHH-HHhHhCC
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRM--------N-FLAVKGPELLNK------------YIGQSEENIRNVF-LKARSAA 293 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~--------~-~~~v~~~~l~~~------------~~g~~~~~~~~~~-~~a~~~~ 293 (478)
-++++|+||+|||++++.++..+.. . ++.+.+.+.... ............+ .......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 3789999999999999999987611 1 223333222211 0111111111211 2223455
Q ss_pred CeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCC--eEEEeCCCC
Q psy450 294 PCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLD--KSLYVGLYE 371 (478)
Q Consensus 294 p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~--~~i~~~~pp 371 (478)
..+++||.+|.+...... .........+..+ +.. ....++.++.|++. ..... +.+ .+. ..+.+. |-
T Consensus 82 ~~llilDglDE~~~~~~~--~~~~~~~~~l~~l---~~~-~~~~~~~liit~r~-~~~~~-~~~--~~~~~~~~~l~-~~ 150 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS--QERQRLLDLLSQL---LPQ-ALPPGVKLIITSRP-RAFPD-LRR--RLKQAQILELE-PF 150 (166)
T ss_pred ceEEEEechHhcccchhh--hHHHHHHHHHHHH---hhh-ccCCCCeEEEEEcC-ChHHH-HHH--hcCCCcEEEEC-CC
Confidence 679999999999853211 0001111222333 322 11233444444443 22211 222 122 456665 46
Q ss_pred CHHHHHHHHHHHHhc
Q psy450 372 DRISQLGVLKAVVRK 386 (478)
Q Consensus 372 ~~~~r~~il~~~~~~ 386 (478)
+.++...+++.+++.
T Consensus 151 ~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 151 SEEDIKQYLRKYFSN 165 (166)
T ss_pred CHHHHHHHHHHHhhc
Confidence 888888888887753
No 295
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.13 E-value=1.2e-06 Score=86.59 Aligned_cols=160 Identities=22% Similarity=0.230 Sum_probs=81.8
Q ss_pred cccCcHHHHHHHHHHHHhhhhh-CC-----CCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechh-----hhhhhhc
Q psy450 208 DIGGLSKLKAEILSTFRGVNRT-SG-----LKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPE-----LLNKYIG 276 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~~~~-~~-----~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~-----l~~~~~g 276 (478)
+|.|.+.+|..+.-.+-..... .. ...-|+||.|.||||||.+.+.+++.....+ ++++.. +.....-
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~~ 103 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVSR 103 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEECC
T ss_pred cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceecc
Confidence 5778888887664322222111 00 1145899999999999999998876554433 433322 1100000
Q ss_pred ---chHHHHH-HHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC-----------CCCCeEE
Q psy450 277 ---QSEENIR-NVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH-----------TSQDVFI 341 (478)
Q Consensus 277 ---~~~~~~~-~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~v 341 (478)
..+-.+. ..+-.| ..+|++|||+|.+.. .....+...|+.-. -+.+.-|
T Consensus 104 d~~~~~~~leaGalvla---d~GiccIDe~dk~~~-------------~~~~~l~eaMEqq~isi~kagi~~~l~ar~sv 167 (331)
T PF00493_consen 104 DPVTGEWVLEAGALVLA---DGGICCIDEFDKMKE-------------DDRDALHEAMEQQTISIAKAGIVTTLNARCSV 167 (331)
T ss_dssp CGGTSSECEEE-HHHHC---TTSEEEECTTTT--C-------------HHHHHHHHHHHCSCEEECTSSSEEEEE---EE
T ss_pred ccccceeEEeCCchhcc---cCceeeecccccccc-------------hHHHHHHHHHHcCeeccchhhhcccccchhhh
Confidence 0000000 122233 335999999999863 23455666665311 1335778
Q ss_pred EEEcCCCC-------------CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhc
Q psy450 342 LGATNRVD-------------LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRK 386 (478)
Q Consensus 342 I~ttn~~~-------------~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~ 386 (478)
++++|... .+++.+++ |||-.+.+..+++.+.-..+.+..+..
T Consensus 168 laa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 168 LAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp EEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred HHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEec
Confidence 99998754 37889999 999888766666766666666666644
No 296
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.12 E-value=0.00017 Score=74.26 Aligned_cols=206 Identities=12% Similarity=0.178 Sum_probs=124.4
Q ss_pred CCCeEEEecccccccch-hhHhhhccccccccccccchhhhccCCCcEEEEe---------eCHhHHhccc--cEEEeCC
Q psy450 44 NLDIFKYDEVNYLCNVK-YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL---------IRKQIQKLFL--KTINVLP 111 (478)
Q Consensus 44 ~p~ilfiDe~d~i~~~r-~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via---------ld~al~rRf~--~~i~~~~ 111 (478)
++++|+|||++.+.+.. ....++..++.+. ..+..+++.+ +++.+++||. ..+.+..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~-----------~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~ 262 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELH-----------DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEP 262 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHH-----------HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCC
Confidence 69999999999997754 2234444455321 2233344444 5667777884 5789999
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhh
Q psy450 112 LTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQSR 191 (478)
Q Consensus 112 P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~~ 191 (478)
||.+.|.+|++...... .+..+.+.++.|+....| +...++.++..-...+.. .+.+++.+...+++..+...
T Consensus 263 pd~e~r~~IL~~~~~~~--~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~----~~~~it~~~a~~~L~~~~~~ 335 (440)
T PRK14088 263 PDEETRKKIARKMLEIE--HGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKET----TGEEVDLKEAILLLKDFIKP 335 (440)
T ss_pred CCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHHhcc
Confidence 99999999999998765 344566667999998775 556666666654444332 35678988888888765311
Q ss_pred cccCCCCCCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh
Q psy450 192 YSDQLDAPSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL 271 (478)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~ 271 (478)
... ...+..+.+++.+.+.. +..+ --|.|++-..+-..+|.+|-.+-......+..++.
T Consensus 336 ~~~------------~~~i~~~~I~~~V~~~~-------~i~~--~~l~s~~R~~~i~~aR~iamyl~r~~~~~s~~~Ig 394 (440)
T PRK14088 336 NRV------------KAMDPIDELIEIVAKVT-------GVSR--EEILSNSRNVKALLARRIGMYVAKNYLGSSLRTIA 394 (440)
T ss_pred ccc------------cCCCCHHHHHHHHHHHc-------CCcH--HHHhCCCCCccccHHHHHHHHHHHHHhCCCHHHHH
Confidence 000 01123344444444432 2111 12356666777788888877665444444555554
Q ss_pred hhhhcchHHHHHHHHHHh
Q psy450 272 NKYIGQSEENIRNVFLKA 289 (478)
Q Consensus 272 ~~~~g~~~~~~~~~~~~a 289 (478)
..+ |.+...+....+..
T Consensus 395 ~~f-gr~hstV~~a~~~i 411 (440)
T PRK14088 395 EKF-NRSHPVVVDSVKKV 411 (440)
T ss_pred HHh-CCCHHHHHHHHHHH
Confidence 443 55555555544443
No 297
>KOG2170|consensus
Probab=98.10 E-value=3e-05 Score=72.94 Aligned_cols=125 Identities=18% Similarity=0.213 Sum_probs=76.8
Q ss_pred cccCcHHHHHHHHHHHHhhhhhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCC-----cEEE-------Eechhhhhhh
Q psy450 208 DIGGLSKLKAEILSTFRGVNRTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRM-----NFLA-------VKGPELLNKY 274 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~~~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~-----~~~~-------v~~~~l~~~~ 274 (478)
.+.|+.-+++.+...+.....+.... |--+-|||++||||.++++.||+.+-. +++. ..-...+..|
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Y 162 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDY 162 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHH
Confidence 36788888988888887775554433 666779999999999999999997722 1111 0011112222
Q ss_pred hcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC---C--CCCCCeEEEEEcCCC
Q psy450 275 IGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG---V--HTSQDVFILGATNRV 348 (478)
Q Consensus 275 ~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~---~--~~~~~v~vI~ttn~~ 348 (478)
-.+- ...+...++.+..++.++||+|+|.+ .++..+--.+|. . .+..+-++|.-+|.-
T Consensus 163 k~eL---~~~v~~~v~~C~rslFIFDE~DKmp~-------------gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~g 225 (344)
T KOG2170|consen 163 KEEL---KNRVRGTVQACQRSLFIFDEVDKLPP-------------GLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAG 225 (344)
T ss_pred HHHH---HHHHHHHHHhcCCceEEechhhhcCH-------------hHHHHHhhhhccccccccccccceEEEEEcCCc
Confidence 2222 23344455567778999999999973 233333333331 1 123467777777754
No 298
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.09 E-value=2.8e-05 Score=66.64 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.5
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
+..++++|+||+||||++.-++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 4459999999999999999999877
No 299
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.07 E-value=0.00014 Score=70.65 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=76.6
Q ss_pred CceEEEeCCCCChHHHHHHHHHHH--hCCc---EEEEechh------h----hhhh--------hcchHHHHHHHHHHhH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATE--CRMN---FLAVKGPE------L----LNKY--------IGQSEENIRNVFLKAR 290 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~--~~~~---~~~v~~~~------l----~~~~--------~g~~~~~~~~~~~~a~ 290 (478)
.+-+.|+|++|+|||++|+.+++. .... ++.++... + .... ...........+....
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L 98 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELL 98 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHH
T ss_pred eEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 667899999999999999999977 3332 23333211 1 1111 0112233444444444
Q ss_pred hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCC
Q psy450 291 SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLY 370 (478)
Q Consensus 291 ~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~p 370 (478)
...+++|+||+++... .+..+...+.. ...+..||.||....... ... .-...+.++.
T Consensus 99 ~~~~~LlVlDdv~~~~---------------~~~~l~~~~~~--~~~~~kilvTTR~~~v~~-~~~---~~~~~~~l~~- 156 (287)
T PF00931_consen 99 KDKRCLLVLDDVWDEE---------------DLEELREPLPS--FSSGSKILVTTRDRSVAG-SLG---GTDKVIELEP- 156 (287)
T ss_dssp CCTSEEEEEEEE-SHH---------------HH-------HC--HHSS-EEEEEESCGGGGT-THH---SCEEEEECSS-
T ss_pred ccccceeeeeeecccc---------------ccccccccccc--cccccccccccccccccc-ccc---cccccccccc-
Confidence 5558999999976542 22222222211 122456777777643211 111 1145677774
Q ss_pred CCHHHHHHHHHHHHhcCC----CCCCCCHHHHHHhc
Q psy450 371 EDRISQLGVLKAVVRKFK----LSDDVSLDSLVHHF 402 (478)
Q Consensus 371 p~~~~r~~il~~~~~~~~----~~~~~~~~~la~~~ 402 (478)
.+.++-.++++....... ........++++.+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c 192 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKC 192 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccc
Confidence 788888888887764433 11122256788887
No 300
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.02 E-value=2.6e-05 Score=63.77 Aligned_cols=23 Identities=43% Similarity=0.901 Sum_probs=20.7
Q ss_pred EEEeCCCCChHHHHHHHHHHHhC
Q psy450 237 LLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
|.|+||||+|||++++.++..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988774
No 301
>PHA00729 NTP-binding motif containing protein
Probab=98.01 E-value=1.8e-05 Score=72.87 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=23.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
.+++|+|+||||||++|.++++.++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 302
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.00 E-value=2.8e-05 Score=71.78 Aligned_cols=77 Identities=21% Similarity=0.303 Sum_probs=49.7
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhh----hc-------------------chHHHHH
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKY----IG-------------------QSEENIR 283 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~----~g-------------------~~~~~~~ 283 (478)
|.+ ..-++++||||+|||+++..++... +.++++++..++.... .. +....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 455 5568899999999999999987644 5678888875411000 00 0011133
Q ss_pred HHHHHhHhCCCeEEEEcCCccccC
Q psy450 284 NVFLKARSAAPCVVFFDELDSLAP 307 (478)
Q Consensus 284 ~~~~~a~~~~p~il~iDeid~l~~ 307 (478)
.+...+....+++|+||-+..+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 333334455789999999998863
No 303
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.99 E-value=8.9e-05 Score=85.60 Aligned_cols=55 Identities=25% Similarity=0.338 Sum_probs=42.7
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCC
Q psy450 202 PNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRM 260 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~ 260 (478)
+...+++++|.+...+++...+.... ...+-+-++|++|+||||+|+++++.+..
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 44567889999999998887764221 12556889999999999999999887744
No 304
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.97 E-value=5.9e-05 Score=83.22 Aligned_cols=132 Identities=15% Similarity=0.095 Sum_probs=82.0
Q ss_pred hhhhHHHHhhhhcCCCeEEEecccccccch---hhHhhhccccccccccccch--hhhccCCCcEEEEe-------eCHh
Q psy450 31 HLNDIVKINLKKYNLDIFKYDEVNYLCNVK---YVYFKLCSFDSVNVKSNETK--DQQCKQQHKKKLVL-------IRKQ 98 (478)
Q Consensus 31 ~~~~if~~~a~~~~p~ilfiDe~d~i~~~r---~~~~~l~~~d~~~~~~~~~~--~~~~~~~~~v~via-------ld~a 98 (478)
.+...|. .+...+| |+||||||.+.+.. ..+.+++.+|......-... ....+ ..++++|+ +|++
T Consensus 403 ~i~~~l~-~~~~~~~-villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d-~s~v~~I~TtN~~~~i~~~ 479 (775)
T TIGR00763 403 RIIQGLK-KAKTKNP-LFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFD-LSKVIFIATANSIDTIPRP 479 (775)
T ss_pred hHHHHHH-HhCcCCC-EEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceec-cCCEEEEEecCCchhCCHH
Confidence 5566777 7766666 89999999998743 35677877874211100000 00111 23566667 9999
Q ss_pred HHhccccEEEeCCCCHHHHHHHHHHHHhh-----cCC---CCCCChhHHHHHHHh-cCCCCHHHHHHHHHHHHHHHH
Q psy450 99 IQKLFLKTINVLPLTEPERRLLIQYQLDC-----LGG---DYGFDASLVEYLSSV-TSGFERHDLTCLVRLSVKNKM 166 (478)
Q Consensus 99 l~rRf~~~i~~~~P~~~~r~~il~~~~~~-----~~~---~~~~~~~~i~~la~~-t~G~s~~di~~l~~~a~~~a~ 166 (478)
+++|| ..|+|+.|+.+++.+|++.++.. .+. .+..+.+.+..+++. |.++...+++..+...+.++.
T Consensus 480 L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~~ 555 (775)
T TIGR00763 480 LLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKICRKAA 555 (775)
T ss_pred HhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHHHHHHH
Confidence 99999 47999999999999999988722 111 123334444666653 345556666665555555443
No 305
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.93 E-value=1.4e-05 Score=82.33 Aligned_cols=62 Identities=26% Similarity=0.415 Sum_probs=50.2
Q ss_pred CcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC-CcEEEEe
Q psy450 205 SWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR-MNFLAVK 266 (478)
Q Consensus 205 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~-~~~~~v~ 266 (478)
-|+++.|++++++++.+.+.......+.+...++|.||||+|||++++.|++.+. .+++.+.
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~k 136 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLK 136 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeec
Confidence 3778999999999999988777665555567789999999999999999998773 3555543
No 306
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.92 E-value=0.00015 Score=71.83 Aligned_cols=136 Identities=14% Similarity=0.056 Sum_probs=88.2
Q ss_pred CCCeEEEecccccccchhhHhhhccccccccccccchhhhcc------CCCcEEEEe-------eCHhHHhccccEEEeC
Q psy450 44 NLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCK------QQHKKKLVL-------IRKQIQKLFLKTINVL 110 (478)
Q Consensus 44 ~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~------~~~~v~via-------ld~al~rRf~~~i~~~ 110 (478)
.++||||||+|.+.... ...+.+.|+..... .....+.. .-.++.+|+ +++++++||...+.++
T Consensus 102 ~~~vl~IDEi~~l~~~~-~e~l~~~~e~~~~~--~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~ 178 (328)
T PRK00080 102 EGDVLFIDEIHRLSPVV-EEILYPAMEDFRLD--IMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLE 178 (328)
T ss_pred cCCEEEEecHhhcchHH-HHHHHHHHHhccee--eeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecC
Confidence 58999999999986543 12223333321100 00000000 112244444 8999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHh
Q psy450 111 PLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDL 188 (478)
Q Consensus 111 ~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~ 188 (478)
.|+.+++.+|++...... ....+.+.++.+++.+.|.- ..+..+++.+...+..+ +...++.++...++..+
T Consensus 179 ~~~~~e~~~il~~~~~~~--~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~a~~~---~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 179 FYTVEELEKIVKRSARIL--GVEIDEEGALEIARRSRGTP-RIANRLLRRVRDFAQVK---GDGVITKEIADKALDML 250 (328)
T ss_pred CCCHHHHHHHHHHHHHHc--CCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHc---CCCCCCHHHHHHHHHHh
Confidence 999999999999998876 44455566699999988755 55666666554444322 34578888888888654
No 307
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.91 E-value=0.00061 Score=70.09 Aligned_cols=132 Identities=14% Similarity=0.231 Sum_probs=88.5
Q ss_pred cCCCeEEEecccccccch-hhHhhhccccccccccccchhhhccCCCcEEEEe---------eCHhHHhccc--cEEEeC
Q psy450 43 YNLDIFKYDEVNYLCNVK-YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL---------IRKQIQKLFL--KTINVL 110 (478)
Q Consensus 43 ~~p~ilfiDe~d~i~~~r-~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via---------ld~al~rRf~--~~i~~~ 110 (478)
.++++|+|||++.+.++. ....++..++.+. ..+..+++.+ +++.+++||. ..+.++
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~-----------~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~ 269 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLH-----------TEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLH 269 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHH-----------HCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecC
Confidence 468899999999998754 2233333344321 1233455555 7889999996 789999
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhh
Q psy450 111 PLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQ 189 (478)
Q Consensus 111 ~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~ 189 (478)
.|+.++|.+||+...... .+..+.+.++.++....+ +...+...+...+..... ....+.+++.++...++..+.
T Consensus 270 ~pd~e~r~~iL~~k~~~~--~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~-~~~~~~~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 270 PLTKEGLRSFLERKAEAL--SIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAY-KKLSHQLLYVDDIKALLHDVL 344 (445)
T ss_pred CCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH-HHhhCCCCCHHHHHHHHHHhh
Confidence 999999999999999876 445566677889987664 444555555544322211 112456799999988888653
No 308
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.91 E-value=1.9e-05 Score=81.53 Aligned_cols=188 Identities=20% Similarity=0.283 Sum_probs=103.3
Q ss_pred cCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh--CCcEEEEechhhhhh-----hhcchHHH-
Q psy450 210 GGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC--RMNFLAVKGPELLNK-----YIGQSEEN- 281 (478)
Q Consensus 210 ~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~--~~~~~~v~~~~l~~~-----~~g~~~~~- 281 (478)
++.+...+.+.......... .-.+++.|.|||||-.+++++-... ..+|+.++|..+... ++|.....
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~----~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~Gaf 391 (606)
T COG3284 316 PLLDPSRATLLRKAERVAAT----DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAF 391 (606)
T ss_pred cccCHHHHHHHHHHHHHhhc----CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCcccc
Confidence 34444555444444433222 3359999999999999999997655 568999999655432 22322222
Q ss_pred -------HHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC--------CCCCCCeEEEEEcC
Q psy450 282 -------IRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG--------VHTSQDVFILGATN 346 (478)
Q Consensus 282 -------~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~--------~~~~~~v~vI~ttn 346 (478)
.+..++.|- ...+|+|||..+. -.+...|+..+.. ....-++-||++|+
T Consensus 392 Tga~~kG~~g~~~~A~---gGtlFldeIgd~p-------------~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath 455 (606)
T COG3284 392 TGARRKGYKGKLEQAD---GGTLFLDEIGDMP-------------LALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATH 455 (606)
T ss_pred ccchhccccccceecC---CCccHHHHhhhch-------------HHHHHHHHHHHhhCceeccCCcceeEEEEEEeccC
Confidence 222233332 2489999998886 3455566655432 22122588999998
Q ss_pred CCCCCCccccCCCCCCeEEEeCC-------CCCHH--HHHHHHHHHHh-cCCCCCCCCHHHHHHhcCCCC--CHHHHHHH
Q psy450 347 RVDLLDPAILRPGRLDKSLYVGL-------YEDRI--SQLGVLKAVVR-KFKLSDDVSLDSLVHHFPSQM--SGADIYSI 414 (478)
Q Consensus 347 ~~~~ld~~l~~~~Rf~~~i~~~~-------pp~~~--~r~~il~~~~~-~~~~~~~~~~~~la~~~~~~~--sg~di~~l 414 (478)
++- ..+.+.|||-..+|+.+ ||-++ ++...+..+++ +.......+-+.++....-.. +-+++.++
T Consensus 456 ~dl---~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v 532 (606)
T COG3284 456 RDL---AQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNV 532 (606)
T ss_pred cCH---HHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHH
Confidence 853 24555677776555444 65443 33333444433 222222233223332221112 33567777
Q ss_pred HHHHHH
Q psy450 415 CSNAWT 420 (478)
Q Consensus 415 ~~~a~~ 420 (478)
++.++.
T Consensus 533 ~~~~~~ 538 (606)
T COG3284 533 IERLAA 538 (606)
T ss_pred HHHHHH
Confidence 776663
No 309
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.89 E-value=2.8e-05 Score=64.38 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=41.9
Q ss_pred ccccCcHHHHHHHHHHHHhhhhhCCCC-CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 207 EDIGGLSKLKAEILSTFRGVNRTSGLK-RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 207 ~~i~g~~~~k~~l~~~~~~~~~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
..+.|+.-+.+.+...+.......... |--+.|+|+||||||++++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 357899999999988888776543222 5556799999999999999999985
No 310
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.89 E-value=0.00015 Score=78.06 Aligned_cols=139 Identities=14% Similarity=0.182 Sum_probs=90.4
Q ss_pred hhhhhHHHHhhh--hcCCCeEEEecccccccch--hhHhhhccccccccccccchhhhccCCCcEEEEe----------e
Q psy450 30 HHLNDIVKINLK--KYNLDIFKYDEVNYLCNVK--YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL----------I 95 (478)
Q Consensus 30 ~~~~~if~~~a~--~~~p~ilfiDe~d~i~~~r--~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via----------l 95 (478)
..+..+|. ... ....+||+|||||.|.... ++..++.+.. .....|+||| +
T Consensus 854 evLerLF~-~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--------------~s~SKLiLIGISNdlDLperL 918 (1164)
T PTZ00112 854 KILDRLFN-QNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--------------KINSKLVLIAISNTMDLPERL 918 (1164)
T ss_pred HHHHHHHh-hhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--------------ccCCeEEEEEecCchhcchhh
Confidence 35666775 432 2346799999999998754 4444443322 2345688888 7
Q ss_pred CHhHHhcccc-EEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Q psy450 96 RKQIQKLFLK-TINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKR 174 (478)
Q Consensus 96 d~al~rRf~~-~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~ 174 (478)
+|.+.+||.. .|.|++++.+++.+||+..+... .-..+.+.++.+|+.....+ +|++..+.- +..+... ....
T Consensus 919 dPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A--~gVLdDdAIELIArkVAq~S-GDARKALDI-LRrAgEi--kegs 992 (1164)
T PTZ00112 919 IPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC--KEIIDHTAIQLCARKVANVS-GDIRKALQI-CRKAFEN--KRGQ 992 (1164)
T ss_pred hhhhhhccccccccCCCCCHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHhhhhcC-CHHHHHHHH-HHHHHhh--cCCC
Confidence 8888888854 48899999999999999998764 22345555688887655443 566654332 2222211 1344
Q ss_pred CCCHHHHHHHHHHhh
Q psy450 175 DLQKEDFQQIYDDLQ 189 (478)
Q Consensus 175 ~it~~d~~~a~~~~~ 189 (478)
.|+.+|+..|...+.
T Consensus 993 kVT~eHVrkAleeiE 1007 (1164)
T PTZ00112 993 KIVPRDITEATNQLF 1007 (1164)
T ss_pred ccCHHHHHHHHHHHH
Confidence 788899888887663
No 311
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.88 E-value=0.0001 Score=71.89 Aligned_cols=116 Identities=22% Similarity=0.299 Sum_probs=66.7
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh----------------hhcchHHHHHHHHHHhH
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK----------------YIGQSEENIRNVFLKAR 290 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~----------------~~g~~~~~~~~~~~~a~ 290 (478)
|.+ .+-++++||||||||++|..++... +.++++++..+-... .....+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 555 4568899999999999988775544 667777765332211 01112223333333345
Q ss_pred hCCCeEEEEcCCccccCCCCCCC----CCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcC
Q psy450 291 SAAPCVVFFDELDSLAPRRGQED----QSSGVMDRVVSQLLAEMDGVHTSQDVFILGATN 346 (478)
Q Consensus 291 ~~~p~il~iDeid~l~~~~~~~~----~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn 346 (478)
...+.+|+||-+..+.++..-.+ ...+...+.+.+++..+.......++.+|.|..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 56789999999999986421111 111222344445555554444456677776644
No 312
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.88 E-value=0.0011 Score=68.43 Aligned_cols=210 Identities=11% Similarity=0.123 Sum_probs=124.7
Q ss_pred cCCCeEEEecccccccch-hhHhhhccccccccccccchhhhccCCCcEEEEe---------eCHhHHhccc--cEEEeC
Q psy450 43 YNLDIFKYDEVNYLCNVK-YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL---------IRKQIQKLFL--KTINVL 110 (478)
Q Consensus 43 ~~p~ilfiDe~d~i~~~r-~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via---------ld~al~rRf~--~~i~~~ 110 (478)
..+++|+|||++.+.++. ....+...++.+. +.+..+++.+ +++.+.+||. ..+.+.
T Consensus 205 ~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~-----------~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~ 273 (450)
T PRK14087 205 CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI-----------ENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQ 273 (450)
T ss_pred ccCCEEEEeccccccCCHHHHHHHHHHHHHHH-----------HcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccC
Confidence 368899999999998764 3334444444321 2333465554 7888888995 678899
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhh
Q psy450 111 PLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQS 190 (478)
Q Consensus 111 ~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~ 190 (478)
.|+.++|.+|++..+...+.....+.+.++.|+....| +...+..++......+... ....+++.+....++..+..
T Consensus 274 ~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~--~~~~~it~~~v~~~l~~~~~ 350 (450)
T PRK14087 274 KLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQN--PEEKIITIEIVSDLFRDIPT 350 (450)
T ss_pred CcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcc--cCCCCCCHHHHHHHHhhccc
Confidence 99999999999999976532224566667899988775 5677777777666444321 11367998888888876521
Q ss_pred hcccCCCCCCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhh
Q psy450 191 RYSDQLDAPSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPEL 270 (478)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l 270 (478)
... ..+..+.+.+.+.+....... =|.|.+-+-.-..+|.+|-.+-..+...+.+++
T Consensus 351 ~~~--------------~~~t~~~I~~~Va~~~~i~~~---------dl~s~~R~~~i~~~RqiamyL~r~~t~~sl~~I 407 (450)
T PRK14087 351 SKL--------------GILNVKKIKEVVSEKYGISVN---------AIDGKARSKSIVTARHIAMYLTKEILNHTLAQI 407 (450)
T ss_pred ccc--------------CCCCHHHHHHHHHHHcCCCHH---------HHhCCCCCccccHHHHHHHHHHHHHcCCCHHHH
Confidence 100 113345555555443322211 112333332334566666555444444555555
Q ss_pred hhhhhcchHHHHHHHHHHh
Q psy450 271 LNKYIGQSEENIRNVFLKA 289 (478)
Q Consensus 271 ~~~~~g~~~~~~~~~~~~a 289 (478)
...+-|.....+-...+..
T Consensus 408 G~~FggrdHsTV~~a~~ki 426 (450)
T PRK14087 408 GEEFGGRDHTTVINAERKI 426 (450)
T ss_pred HHHhCCCChHHHHHHHHHH
Confidence 5544445555544444443
No 313
>KOG0478|consensus
Probab=97.87 E-value=4.8e-05 Score=78.73 Aligned_cols=152 Identities=21% Similarity=0.313 Sum_probs=82.4
Q ss_pred cccCcHHHHHHHHHHHHhh----hhhCC-CC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHH
Q psy450 208 DIGGLSKLKAEILSTFRGV----NRTSG-LK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEEN 281 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~----~~~~~-~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~ 281 (478)
+|-|++.+|+-|.-.+-.- ....| .+ .-+|||+|.||||||.+.+.+++.+..-.+. ++. .+..+|.+.-.
T Consensus 430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yT-SGk--GsSavGLTayV 506 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYT-SGK--GSSAVGLTAYV 506 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceee-cCC--ccchhcceeeE
Confidence 5678888888765333221 11111 11 3579999999999999999999877544332 220 00011111100
Q ss_pred -----HHHHHHHh---HhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhh------cCCC--CCCCeEEEEEc
Q psy450 282 -----IRNVFLKA---RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEM------DGVH--TSQDVFILGAT 345 (478)
Q Consensus 282 -----~~~~~~~a---~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l------~~~~--~~~~v~vI~tt 345 (478)
.+++..+. ......|-.|||||++.... +.++.+.+.+- .|+- -+.+.-|+|++
T Consensus 507 trd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dSt----------rSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaA 576 (804)
T KOG0478|consen 507 TKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDST----------RSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAA 576 (804)
T ss_pred EecCccceeeeecCcEEEcCCceEEchhhhhhhHHH----------HHHHHHHHHHhhhhHhhcceeeeccccceeeeee
Confidence 01111111 11233588899999996211 23433333221 1111 13456688898
Q ss_pred CCCC-------------CCCccccCCCCCCeEEEeCCCCCHH
Q psy450 346 NRVD-------------LLDPAILRPGRLDKSLYVGLYEDRI 374 (478)
Q Consensus 346 n~~~-------------~ld~~l~~~~Rf~~~i~~~~pp~~~ 374 (478)
|... .|+|.|++ |||.++-+-.++++.
T Consensus 577 NP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 577 NPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDER 616 (804)
T ss_pred ccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchh
Confidence 8531 37899999 999776554444543
No 314
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.85 E-value=1.5e-05 Score=66.68 Aligned_cols=30 Identities=30% Similarity=0.707 Sum_probs=26.9
Q ss_pred EEEeCCCCChHHHHHHHHHHHhCCcEEEEe
Q psy450 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVK 266 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~~~~~~~v~ 266 (478)
|++.|+||+||||+|+.+++.++.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998876554
No 315
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.85 E-value=0.00025 Score=69.56 Aligned_cols=136 Identities=10% Similarity=0.039 Sum_probs=90.5
Q ss_pred cCCCeEEEecccccccchhhHhhhccccccccccccchhhhc------cCCCcEEEEe-------eCHhHHhccccEEEe
Q psy450 43 YNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQC------KQQHKKKLVL-------IRKQIQKLFLKTINV 109 (478)
Q Consensus 43 ~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~------~~~~~v~via-------ld~al~rRf~~~i~~ 109 (478)
..+.||||||++.+.+.. ...+++.|+..... .....+. ....++.+|+ +++++++||...+.+
T Consensus 80 ~~~~vl~iDEi~~l~~~~-~e~l~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l 156 (305)
T TIGR00635 80 EEGDVLFIDEIHRLSPAV-EELLYPAMEDFRLD--IVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRL 156 (305)
T ss_pred ccCCEEEEehHhhhCHHH-HHHhhHHHhhhhee--eeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEe
Confidence 357899999999987543 23344444422110 0000000 1112355555 899999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q psy450 110 LPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDD 187 (478)
Q Consensus 110 ~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~ 187 (478)
+.|+.+++.++++...... ....+.+.++.+++.+.|.- ..+..++..+...+... +...++.+.+..++..
T Consensus 157 ~~l~~~e~~~il~~~~~~~--~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a~~~---~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 157 EFYTVEELAEIVSRSAGLL--NVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFAQVR---GQKIINRDIALKALEM 228 (305)
T ss_pred CCCCHHHHHHHHHHHHHHh--CCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHc---CCCCcCHHHHHHHHHH
Confidence 9999999999999988766 44555666689999988865 55666777665444322 3456888888888876
No 316
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.84 E-value=0.00016 Score=65.38 Aligned_cols=31 Identities=39% Similarity=0.275 Sum_probs=25.5
Q ss_pred EEEeCCCCChHHHHHHHHHHHh---CCcEEEEec
Q psy450 237 LLLYGPPGTGKTLIAKAVATEC---RMNFLAVKG 267 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~ 267 (478)
++++||||||||+++..++... |.++++++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 7899999999999999887654 667777765
No 317
>PRK08118 topology modulation protein; Reviewed
Probab=97.83 E-value=4e-05 Score=68.05 Aligned_cols=32 Identities=19% Similarity=0.449 Sum_probs=29.6
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEec
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVKG 267 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~ 267 (478)
.|+++||||+||||+|+.+++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 48999999999999999999999999888774
No 318
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.83 E-value=9.7e-05 Score=69.08 Aligned_cols=38 Identities=32% Similarity=0.565 Sum_probs=30.7
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEech
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGP 268 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~ 268 (478)
|.+ ..-++++|+||+|||+++..++... +.++++++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 444 4567999999999999999998754 6788888876
No 319
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.82 E-value=4.4e-05 Score=70.55 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.3
Q ss_pred eEEEeCCCCChHHHHHHHHHHHh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
-+-+.||+||||||+.+.+|.-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999744
No 320
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.80 E-value=0.00015 Score=70.76 Aligned_cols=116 Identities=21% Similarity=0.291 Sum_probs=64.8
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh----------------hhcchHHHHHHHHHHhH
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK----------------YIGQSEENIRNVFLKAR 290 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~----------------~~g~~~~~~~~~~~~a~ 290 (478)
|.+ .+-+.++||||||||++|-.++... +...++++..+-... .....+..+..+-...+
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 555 4457899999999999999876543 667777776331111 01112222222222335
Q ss_pred hCCCeEEEEcCCccccCCCCCCC----CCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcC
Q psy450 291 SAAPCVVFFDELDSLAPRRGQED----QSSGVMDRVVSQLLAEMDGVHTSQDVFILGATN 346 (478)
Q Consensus 291 ~~~p~il~iDeid~l~~~~~~~~----~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn 346 (478)
...+.+|+||-+-.+.++..-.+ ...+...+.+.+.+..+.......++.+|.|..
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 56789999999999986422111 111122234444444444433455666666543
No 321
>KOG0482|consensus
Probab=97.79 E-value=7.8e-05 Score=74.61 Aligned_cols=162 Identities=19% Similarity=0.287 Sum_probs=95.3
Q ss_pred cccCcHHHHHHHHHHHHhh-hhh--CCCC---CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHH
Q psy450 208 DIGGLSKLKAEILSTFRGV-NRT--SGLK---RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEEN 281 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~-~~~--~~~~---~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~ 281 (478)
+|.|.+++|+.|.-++... -+. .|.+ .-+|+|.|.||+.||.|.+.+.+.....++.... .+..+|.+...
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGr---GSSGVGLTAAV 419 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGR---GSSGVGLTAAV 419 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCC---CCCccccchhh
Confidence 6899999999887665543 222 2333 3479999999999999999998876555443321 12234444444
Q ss_pred HHHHHHHh--------HhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHh------hcCCC--CCCCeEEEEEc
Q psy450 282 IRNVFLKA--------RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAE------MDGVH--TSQDVFILGAT 345 (478)
Q Consensus 282 ~~~~~~~a--------~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~------l~~~~--~~~~v~vI~tt 345 (478)
+++-...- .-....|-+|||+|++.... +..+.+.+.+ -.|+. -+-+.-|++++
T Consensus 420 mkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~D----------RtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAA 489 (721)
T KOG0482|consen 420 MKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESD----------RTAIHEVMEQQTISIAKAGINTTLNARTSILAAA 489 (721)
T ss_pred hcCCCCCeeEeccceEEEccCceEeehhhhhhhhhh----------hHHHHHHHHhhhhhhhhhccccchhhhHHhhhhc
Confidence 33211100 01123478899999997421 2222222221 11221 13456788888
Q ss_pred CCCC-------------CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHH
Q psy450 346 NRVD-------------LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVV 384 (478)
Q Consensus 346 n~~~-------------~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~ 384 (478)
|..+ .||.+|++ |||....+..-|+++.-+.+.++..
T Consensus 490 NPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiT 539 (721)
T KOG0482|consen 490 NPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHIT 539 (721)
T ss_pred CccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhH
Confidence 8642 47899999 9996655544356665555555443
No 322
>PRK07261 topology modulation protein; Provisional
Probab=97.78 E-value=4.9e-05 Score=67.80 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=28.7
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEec
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVKG 267 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~ 267 (478)
.|+++|+||+||||+|+.++..++.+++..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 38999999999999999999999988877764
No 323
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.78 E-value=7.9e-05 Score=68.04 Aligned_cols=98 Identities=22% Similarity=0.336 Sum_probs=53.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh----hhcchHHHHHHHHHHhH---------hCCCeEEE
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK----YIGQSEENIRNVFLKAR---------SAAPCVVF 298 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~----~~g~~~~~~~~~~~~a~---------~~~p~il~ 298 (478)
+..++.||||||||++++.+...+ +..++.+....-... ..+.....+...+.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 347889999999999999987655 566766665332211 11111112222222111 12346999
Q ss_pred EcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCC
Q psy450 299 FDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNR 347 (478)
Q Consensus 299 iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~ 347 (478)
|||+..+. ...+..++..... ...++++++-.+.
T Consensus 99 VDEasmv~-------------~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMVD-------------SRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG-B-------------HHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred EecccccC-------------HHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 99988776 3456666666553 2346777766554
No 324
>PRK06893 DNA replication initiation factor; Validated
Probab=97.75 E-value=0.00043 Score=64.87 Aligned_cols=124 Identities=13% Similarity=0.138 Sum_probs=82.9
Q ss_pred CCCeEEEecccccccchh-hHhhhccccccccccccchhhhccCCCcEEEEe----------eCHhHHhcc--ccEEEeC
Q psy450 44 NLDIFKYDEVNYLCNVKY-VYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL----------IRKQIQKLF--LKTINVL 110 (478)
Q Consensus 44 ~p~ilfiDe~d~i~~~r~-~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via----------ld~al~rRf--~~~i~~~ 110 (478)
+.++|+|||++.+.+.+. ...++..++... ..+..++|++ .+|.+.+|+ ...+.++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~-----------~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~ 159 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIK-----------EQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLN 159 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHH-----------HcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCC
Confidence 468999999999987652 223444455321 2334566776 458899875 4789999
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q psy450 111 PLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIY 185 (478)
Q Consensus 111 ~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~ 185 (478)
.||.++|.+|++...... .+..+.+.+++|+.+.+| +.+.+..++..-...+. . .+.++|...+.+++
T Consensus 160 ~pd~e~~~~iL~~~a~~~--~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~-~---~~~~it~~~v~~~L 227 (229)
T PRK06893 160 DLTDEQKIIVLQRNAYQR--GIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASL-Q---AQRKLTIPFVKEIL 227 (229)
T ss_pred CCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH-h---cCCCCCHHHHHHHh
Confidence 999999999999988765 455667777999998774 44555555554332222 1 34568877665554
No 325
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.73 E-value=0.0003 Score=71.40 Aligned_cols=69 Identities=17% Similarity=0.315 Sum_probs=45.8
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCcccc
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLA 306 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~ 306 (478)
.++++||.+||||++++.+.+......++++..+........ ......+..+.......+||||++.+-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~ 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch
Confidence 689999999999999998888876656777766654332221 111122222222244699999999874
No 326
>KOG1968|consensus
Probab=97.73 E-value=7.8e-05 Score=81.47 Aligned_cols=161 Identities=23% Similarity=0.268 Sum_probs=95.8
Q ss_pred EEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhh-----cc--hHHHHHHHH---HH--hHhCCCeEEEEcCCcc
Q psy450 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYI-----GQ--SEENIRNVF---LK--ARSAAPCVVFFDELDS 304 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~-----g~--~~~~~~~~~---~~--a~~~~p~il~iDeid~ 304 (478)
+++.||||+|||+.+.++|.++|..++..|.++..+.+. +. +...+...+ .. .......||++||+|-
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 689999999999999999999999999999876654422 11 111122222 00 0112224999999999
Q ss_pred ccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHH
Q psy450 305 LAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVV 384 (478)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~ 384 (478)
+.... +..+.++..... ....-+|+++|........-+. |-...++|+.| +......-+...+
T Consensus 440 ~~~~d----------Rg~v~~l~~l~~----ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP-~~~~i~~ri~si~ 502 (871)
T KOG1968|consen 440 MFGED----------RGGVSKLSSLCK----KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKP-SSELIRSRIMSIC 502 (871)
T ss_pred ccchh----------hhhHHHHHHHHH----hccCCeEEEecCCCCccccchh--hhcceeeecCC-cHHHHHhhhhhhh
Confidence 98511 122333332222 2234578888887665443333 54567888884 5555544444333
Q ss_pred h--cCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy450 385 R--KFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWT 420 (478)
Q Consensus 385 ~--~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~ 420 (478)
. .+.+..+ .+++++..+ ++||++++..-..
T Consensus 503 ~se~~ki~~~-~l~~~s~~~-----~~DiR~~i~~lq~ 534 (871)
T KOG1968|consen 503 KSEGIKISDD-VLEEISKLS-----GGDIRQIIMQLQF 534 (871)
T ss_pred cccceecCcH-HHHHHHHhc-----ccCHHHHHHHHhh
Confidence 2 2333333 377777654 6788887665443
No 327
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.72 E-value=0.00027 Score=72.76 Aligned_cols=77 Identities=27% Similarity=0.432 Sum_probs=53.8
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhh------hcc--------hHHHHHHHHHHhHhC
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKY------IGQ--------SEENIRNVFLKARSA 292 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~------~g~--------~~~~~~~~~~~a~~~ 292 (478)
|.+ ...++++|+||+|||+++..++... +.++++++..+-..+. .|. .+..+..++......
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 444 4567899999999999999998765 5678888865433221 111 112345566666667
Q ss_pred CCeEEEEcCCccccC
Q psy450 293 APCVVFFDELDSLAP 307 (478)
Q Consensus 293 ~p~il~iDeid~l~~ 307 (478)
.|.+|+||++..+..
T Consensus 156 ~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 156 KPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCEEEEechhhhcc
Confidence 889999999998864
No 328
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.69 E-value=0.00015 Score=70.13 Aligned_cols=100 Identities=19% Similarity=0.280 Sum_probs=57.4
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHHhCCcE-EEEechhhh-------hhhhcchHHHHHHHHHHhHhCCCeEEEEcCCcc
Q psy450 233 KRSGLLLYGPPGTGKTLIAKAVATECRMNF-LAVKGPELL-------NKYIGQSEENIRNVFLKARSAAPCVVFFDELDS 304 (478)
Q Consensus 233 ~~~~iLl~Gp~GtGKT~la~~la~~~~~~~-~~v~~~~l~-------~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~ 304 (478)
.++|++|||+-|+|||+|.-...+.+..+- ..+....+. ....|++ .-+..+-.... ....||+|||++.
T Consensus 64 ~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~-~~~~vLCfDEF~V 141 (367)
T COG1485 64 PVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELA-AETRVLCFDEFEV 141 (367)
T ss_pred CCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHH-hcCCEEEeeeeee
Confidence 489999999999999999999988775432 111111111 1112332 11111211111 1224999999875
Q ss_pred ccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q psy450 305 LAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRV 348 (478)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~ 348 (478)
=... ...++..|+..+= ..+|++++|+|.+
T Consensus 142 tDI~----------DAMiL~rL~~~Lf----~~GV~lvaTSN~~ 171 (367)
T COG1485 142 TDIA----------DAMILGRLLEALF----ARGVVLVATSNTA 171 (367)
T ss_pred cChH----------HHHHHHHHHHHHH----HCCcEEEEeCCCC
Confidence 3311 1245566665542 3478999999974
No 329
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.69 E-value=6.1e-05 Score=69.48 Aligned_cols=72 Identities=19% Similarity=0.244 Sum_probs=41.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechh-hhhh---------hhcchHHHHHHHHHHhH--hCCCeEEEEcC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPE-LLNK---------YIGQSEENIRNVFLKAR--SAAPCVVFFDE 301 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~-l~~~---------~~g~~~~~~~~~~~~a~--~~~p~il~iDe 301 (478)
|..+|+||+||+|||++|+.++.. .-++..+... .+.. -...+...+.+.+..+. ...+.+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 566999999999999999998631 1222222211 0000 01112223333333332 24467999999
Q ss_pred CccccC
Q psy450 302 LDSLAP 307 (478)
Q Consensus 302 id~l~~ 307 (478)
++.+..
T Consensus 90 I~~l~~ 95 (220)
T TIGR01618 90 ISALQN 95 (220)
T ss_pred HHHHHH
Confidence 998754
No 330
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.68 E-value=0.00016 Score=72.41 Aligned_cols=74 Identities=26% Similarity=0.413 Sum_probs=51.5
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhh------hcc--------hHHHHHHHHHHhHhCCCeE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKY------IGQ--------SEENIRNVFLKARSAAPCV 296 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~------~g~--------~~~~~~~~~~~a~~~~p~i 296 (478)
..-++++|+||+|||+++..++... +.++++++..+-..+. .|. .+..+..++.......|.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~l 161 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPDL 161 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcE
Confidence 4557899999999999999998765 3578888764322211 111 1223455666666778999
Q ss_pred EEEcCCccccC
Q psy450 297 VFFDELDSLAP 307 (478)
Q Consensus 297 l~iDeid~l~~ 307 (478)
|+||++..+..
T Consensus 162 VVIDSIq~l~~ 172 (372)
T cd01121 162 VIIDSIQTVYS 172 (372)
T ss_pred EEEcchHHhhc
Confidence 99999998864
No 331
>KOG2383|consensus
Probab=97.67 E-value=0.0003 Score=68.85 Aligned_cols=159 Identities=16% Similarity=0.241 Sum_probs=81.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcE--EEEechhhhh-----------hh----hcchHH----HHHHHHHHhHhC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNF--LAVKGPELLN-----------KY----IGQSEE----NIRNVFLKARSA 292 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~--~~v~~~~l~~-----------~~----~g~~~~----~~~~~~~~a~~~ 292 (478)
|+|++|||..|||||+|.-.+-..+.... -.+...++.. .. .|.+.. -+.-+-+... .
T Consensus 114 PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eIa-~ 192 (467)
T KOG2383|consen 114 PKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEIA-E 192 (467)
T ss_pred CceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHHh-h
Confidence 89999999999999999998875542200 0011111110 00 000000 0111111111 1
Q ss_pred CCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC-CCCCccccCCCCCCeEEEeCCCC
Q psy450 293 APCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRV-DLLDPAILRPGRLDKSLYVGLYE 371 (478)
Q Consensus 293 ~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~-~~ld~~l~~~~Rf~~~i~~~~pp 371 (478)
.-++|++||+..-.- ...-+++.|+..+= ..++++++|+|++ +.|-.. -+++..++|
T Consensus 193 ea~lLCFDEfQVTDV----------ADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYkn-----GlQR~~F~P--- 250 (467)
T KOG2383|consen 193 EAILLCFDEFQVTDV----------ADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKN-----GLQRENFIP--- 250 (467)
T ss_pred hceeeeechhhhhhH----------HHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhc-----chhhhhhhh---
Confidence 236999999865421 01234444444331 3478999999984 333221 222233332
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCC--CCHH-HHHHHHHHHH
Q psy450 372 DRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQ--MSGA-DIYSICSNAW 419 (478)
Q Consensus 372 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~--~sg~-di~~l~~~a~ 419 (478)
-..+|+.+++-+.+...+|+...+.....+ |.+. |...++++--
T Consensus 251 ----fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 251 ----FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred ----HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHH
Confidence 245677777777788888887433322122 3444 6666655443
No 332
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.67 E-value=0.0061 Score=56.57 Aligned_cols=172 Identities=18% Similarity=0.175 Sum_probs=87.4
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCC---cEEEEechhh-----hhhh----hcc--------hHHHHHHHHHHh-HhCCC
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRM---NFLAVKGPEL-----LNKY----IGQ--------SEENIRNVFLKA-RSAAP 294 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~---~~~~v~~~~l-----~~~~----~g~--------~~~~~~~~~~~a-~~~~p 294 (478)
-+.++|+.|+|||.++|++...++. ..++++...+ ...+ .+. .+..-+.+.... +...|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 4778999999999999977766632 2334443222 1111 111 111112222222 34556
Q ss_pred eEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccC------CCCCCeEEEeC
Q psy450 295 CVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILR------PGRLDKSLYVG 368 (478)
Q Consensus 295 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~------~~Rf~~~i~~~ 368 (478)
.++++||++.+.... .+.+..|.+.-.+....-.++.++ .|+ |.+.++. .-|++..+..+
T Consensus 133 v~l~vdEah~L~~~~----------le~Lrll~nl~~~~~~~l~ivL~G---qp~-L~~~lr~~~l~e~~~R~~ir~~l~ 198 (269)
T COG3267 133 VVLMVDEAHDLNDSA----------LEALRLLTNLEEDSSKLLSIVLIG---QPK-LRPRLRLPVLRELEQRIDIRIELP 198 (269)
T ss_pred eEEeehhHhhhChhH----------HHHHHHHHhhcccccCceeeeecC---Ccc-cchhhchHHHHhhhheEEEEEecC
Confidence 899999999997421 122222222222111112244443 222 2222221 12777666666
Q ss_pred CCCCHHHHHHHHHHHHhcCCCC----CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q psy450 369 LYEDRISQLGVLKAVVRKFKLS----DDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIR 424 (478)
Q Consensus 369 ~pp~~~~r~~il~~~~~~~~~~----~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~ 424 (478)
|.+.++-...++..++.-..+ ++.....+.... .| .+.-|.++|..|...|..
T Consensus 199 -P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~s-qg-~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 199 -PLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEAS-QG-IPRLINNLATLALDAAYS 255 (269)
T ss_pred -CcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHh-cc-chHHHHHHHHHHHHHHHH
Confidence 467776667777777654332 333355555554 55 344566666655554443
No 333
>PRK04296 thymidine kinase; Provisional
Probab=97.65 E-value=0.00035 Score=63.44 Aligned_cols=70 Identities=23% Similarity=0.246 Sum_probs=41.3
Q ss_pred eEEEeCCCCChHHHHHHHHHHHh---CCcEEEEec--h--h----hhhhhhcch-----HHHHHHHHHHh--HhCCCeEE
Q psy450 236 GLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKG--P--E----LLNKYIGQS-----EENIRNVFLKA--RSAAPCVV 297 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~--~--~----l~~~~~g~~-----~~~~~~~~~~a--~~~~p~il 297 (478)
-.+++||+|+|||+++..++..+ +..++.+.. . . +.+. .|.. ......++..+ ....+.+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 36889999999999998888766 556665543 1 1 1111 1110 01122333332 33456799
Q ss_pred EEcCCcccc
Q psy450 298 FFDELDSLA 306 (478)
Q Consensus 298 ~iDeid~l~ 306 (478)
+|||++.+.
T Consensus 83 iIDEaq~l~ 91 (190)
T PRK04296 83 LIDEAQFLD 91 (190)
T ss_pred EEEccccCC
Confidence 999997663
No 334
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.65 E-value=0.00046 Score=64.65 Aligned_cols=73 Identities=21% Similarity=0.310 Sum_probs=45.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechh----hhhhh--hc-----------------------c--hH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPE----LLNKY--IG-----------------------Q--SE 279 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~----l~~~~--~g-----------------------~--~~ 279 (478)
...+++.|+||||||+++..++... +.+.++++..+ +.... .| . ..
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 103 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEKR 103 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHHH
Confidence 4568999999999999976655433 55666666431 11110 00 0 12
Q ss_pred HHHHHHHHHhHhCCCeEEEEcCCcccc
Q psy450 280 ENIRNVFLKARSAAPCVVFFDELDSLA 306 (478)
Q Consensus 280 ~~~~~~~~~a~~~~p~il~iDeid~l~ 306 (478)
..+..+........|.++++|++-.+.
T Consensus 104 ~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 104 KFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 233444555555678899999988765
No 335
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.65 E-value=0.0015 Score=65.54 Aligned_cols=81 Identities=21% Similarity=0.219 Sum_probs=48.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCC-cEEEEechhhhhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRM-NFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQE 312 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~-~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~ 312 (478)
..++++.||+|||||+++.+++....+ .-..++.+.+..... . ..+.. -..+.+|+|||+..+.-..
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L~----~---~~lg~--v~~~DlLI~DEvgylp~~~--- 276 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNIS----T---RQIGL--VGRWDVVAFDEVATLKFAK--- 276 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHHH----H---HHHhh--hccCCEEEEEcCCCCcCCc---
Confidence 457999999999999999998776200 003334444433211 1 12222 2345799999998865322
Q ss_pred CCCchhHHHHHHHHHHhhcC
Q psy450 313 DQSSGVMDRVVSQLLAEMDG 332 (478)
Q Consensus 313 ~~~~~~~~~~~~~ll~~l~~ 332 (478)
.+..+..+...|..
T Consensus 277 ------~~~~v~imK~yMes 290 (449)
T TIGR02688 277 ------PKELIGILKNYMES 290 (449)
T ss_pred ------hHHHHHHHHHHHHh
Confidence 13455666666653
No 336
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.63 E-value=0.00048 Score=72.63 Aligned_cols=134 Identities=14% Similarity=0.186 Sum_probs=90.9
Q ss_pred cCCCeEEEecccccccchhhHhhhccccccccccc---cch-------------hhhccCCCcEEEEe--------eCHh
Q psy450 43 YNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSN---ETK-------------DQQCKQQHKKKLVL--------IRKQ 98 (478)
Q Consensus 43 ~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~---~~~-------------~~~~~~~~~v~via--------ld~a 98 (478)
....+|||||++.+-..- .+.+|.-|+.-..... ... ..+. ...+.+|+ ++|+
T Consensus 174 a~gG~L~IdEI~~L~~~~-q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~rlI~ATt~~p~~L~pa 250 (531)
T TIGR02902 174 AHGGVLFIDEIGELHPVQ-MNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGL--PADFRLIGATTRNPEEIPPA 250 (531)
T ss_pred cCCcEEEEechhhCCHHH-HHHHHHHHHhCeeeeccccccccCcccccchhhhcccCc--ccceEEEEEecCCcccCChH
Confidence 346899999999986543 4555554442110000 000 0111 12234443 9999
Q ss_pred HHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCH
Q psy450 99 IQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQK 178 (478)
Q Consensus 99 l~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~ 178 (478)
+++|+ ..|.|+.++.+++.+|++..+++.+ +..+.+.++.++..+. +++++.++++.|+..+..+ +...|+.
T Consensus 251 LrsR~-~~I~f~pL~~eei~~Il~~~a~k~~--i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~---~~~~It~ 322 (531)
T TIGR02902 251 LRSRC-VEIFFRPLLDEEIKEIAKNAAEKIG--INLEKHALELIVKYAS--NGREAVNIVQLAAGIALGE---GRKRILA 322 (531)
T ss_pred Hhhhh-heeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhC---CCcEEcH
Confidence 99999 5688999999999999999998874 4445555577776553 8899999999998876543 4467999
Q ss_pred HHHHHHHHH
Q psy450 179 EDFQQIYDD 187 (478)
Q Consensus 179 ~d~~~a~~~ 187 (478)
+|+..++..
T Consensus 323 ~dI~~vl~~ 331 (531)
T TIGR02902 323 EDIEWVAEN 331 (531)
T ss_pred HHHHHHhCC
Confidence 999998763
No 337
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.63 E-value=0.00033 Score=65.74 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=37.7
Q ss_pred EEEeCCC-CHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHH
Q psy450 106 TINVLPL-TEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVR 159 (478)
Q Consensus 106 ~i~~~~P-~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~ 159 (478)
.|.+..| |.++-...|.-+.+.+ ++..+.+ ++|...|.|---++|+-.+.
T Consensus 76 ei~lrnpwdfeevy~~lhdfar~y--~f~~e~e--dylihittgthvaqicwfll 126 (531)
T COG4650 76 EIELRNPWDFEEVYACLHDFARGY--EFQPEKE--DYLIHITTGTHVAQICWFLL 126 (531)
T ss_pred EEEecCcccHHHHHHHHHHHhhcC--CCCCccc--ceEEEEecCccHHHHHHHHH
Confidence 4666666 8999999999999887 5554433 78888999988888876543
No 338
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.63 E-value=0.00027 Score=65.70 Aligned_cols=37 Identities=38% Similarity=0.566 Sum_probs=29.1
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEec
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKG 267 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~ 267 (478)
|.+ ..-++++|+||+|||+++..++... +.++++++.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 444 4558899999999999999998765 567777765
No 339
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.62 E-value=0.00021 Score=61.50 Aligned_cols=35 Identities=31% Similarity=0.641 Sum_probs=28.2
Q ss_pred EEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhh
Q psy450 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK 273 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~ 273 (478)
+++.||||+||||+|+.++..++ ...++...+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~ 36 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRR 36 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHH
Confidence 78999999999999999999998 445665555443
No 340
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.62 E-value=5.6e-05 Score=68.05 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=37.7
Q ss_pred ccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc---EEEEechhh
Q psy450 209 IGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN---FLAVKGPEL 270 (478)
Q Consensus 209 i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~---~~~v~~~~l 270 (478)
++|-++..+++...+. . ..+..++.++++|++|+|||++++.+...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~--~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-A--AQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-G--TSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-H--HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5788888888888775 2 222236789999999999999999988776433 666666544
No 341
>KOG0480|consensus
Probab=97.61 E-value=0.0011 Score=68.40 Aligned_cols=161 Identities=20% Similarity=0.274 Sum_probs=88.6
Q ss_pred cccccCcHHHHHHHHHHHHhh-hhhC--CCC---CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchH
Q psy450 206 WEDIGGLSKLKAEILSTFRGV-NRTS--GLK---RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSE 279 (478)
Q Consensus 206 ~~~i~g~~~~k~~l~~~~~~~-~~~~--~~~---~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~ 279 (478)
+-.|.|.+.+|.-+.-.+-.- .... |.+ --+++++|.||+|||-+.++.+.-+...++.-..+. ...|.+.
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaS---SaAGLTa 420 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKAS---SAAGLTA 420 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCccc---ccccceE
Confidence 456789999998775443322 1111 222 347999999999999999999987765544321110 0111111
Q ss_pred HHHHH-----HHHHh---HhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC-----------CCCCeE
Q psy450 280 ENIRN-----VFLKA---RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH-----------TSQDVF 340 (478)
Q Consensus 280 ~~~~~-----~~~~a---~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~ 340 (478)
..+++ ..-.| .-....|-.|||+|++.-+ -...+...|+.-. -+.+.-
T Consensus 421 aVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~-------------dqvAihEAMEQQtISIaKAGv~aTLnARtS 487 (764)
T KOG0480|consen 421 AVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK-------------DQVAIHEAMEQQTISIAKAGVVATLNARTS 487 (764)
T ss_pred EEEecCCCCceeeecCcEEEccCceEEechhcccChH-------------hHHHHHHHHHhheehheecceEEeecchhh
Confidence 11110 00011 1123358889999999732 1223444443210 123445
Q ss_pred EEEEcCCCC-------------CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHH
Q psy450 341 ILGATNRVD-------------LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVV 384 (478)
Q Consensus 341 vI~ttn~~~-------------~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~ 384 (478)
|+|++|... .+++++++ |||..+-+-.-|++..-..|-++.+
T Consensus 488 IlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIl 542 (764)
T KOG0480|consen 488 ILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHIL 542 (764)
T ss_pred hhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHH
Confidence 778888652 37889999 9996654322255554445555444
No 342
>PRK09354 recA recombinase A; Provisional
Probab=97.60 E-value=0.00033 Score=68.99 Aligned_cols=78 Identities=23% Similarity=0.305 Sum_probs=49.1
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh----------------hhcchHHHHHHHHHHhH
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK----------------YIGQSEENIRNVFLKAR 290 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~----------------~~g~~~~~~~~~~~~a~ 290 (478)
|.+ .+-+.++||||||||+++-.++... +...++++..+-... .....+..+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 555 4567899999999999998876443 667777775431111 01112222222222334
Q ss_pred hCCCeEEEEcCCccccCC
Q psy450 291 SAAPCVVFFDELDSLAPR 308 (478)
Q Consensus 291 ~~~p~il~iDeid~l~~~ 308 (478)
...+.+|+||-+-.+.++
T Consensus 136 s~~~~lIVIDSvaaL~~~ 153 (349)
T PRK09354 136 SGAVDLIVVDSVAALVPK 153 (349)
T ss_pred cCCCCEEEEeChhhhcch
Confidence 567889999999999863
No 343
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.59 E-value=0.0012 Score=67.59 Aligned_cols=130 Identities=13% Similarity=0.205 Sum_probs=86.6
Q ss_pred hhhhHHHHhhhh----cCCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe---------eCH
Q psy450 31 HLNDIVKINLKK----YNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL---------IRK 97 (478)
Q Consensus 31 ~~~~if~~~a~~----~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via---------ld~ 97 (478)
.++.+++ .++. .+..||||||+|.+.... .+.++..++ .+.+++|+ +++
T Consensus 76 ~ir~ii~-~~~~~~~~g~~~vL~IDEi~~l~~~~-q~~LL~~le----------------~~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 76 DLREVIE-EARQRRSAGRRTILFIDEIHRFNKAQ-QDALLPHVE----------------DGTITLIGATTENPSFEVNP 137 (413)
T ss_pred HHHHHHH-HHHHhhhcCCceEEEEechhhhCHHH-HHHHHHHhh----------------cCcEEEEEeCCCChhhhccH
Confidence 4666776 5532 257899999999876433 344454444 23466665 889
Q ss_pred hHHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCC-CCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy450 98 QIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDY-GFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDL 176 (478)
Q Consensus 98 al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~-~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~i 176 (478)
++++|+ ..+.|+.|+.++...+++..+...+..+ ..+.+.++.++..+.| ....+.+++..++.. ...|
T Consensus 138 aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~~--------~~~I 207 (413)
T PRK13342 138 ALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAALG--------VDSI 207 (413)
T ss_pred HHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHc--------cCCC
Confidence 999999 7899999999999999999886532222 4455556788887644 344444444444322 3468
Q ss_pred CHHHHHHHHHHh
Q psy450 177 QKEDFQQIYDDL 188 (478)
Q Consensus 177 t~~d~~~a~~~~ 188 (478)
+.+++..++...
T Consensus 208 t~~~v~~~~~~~ 219 (413)
T PRK13342 208 TLELLEEALQKR 219 (413)
T ss_pred CHHHHHHHHhhh
Confidence 888888777654
No 344
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.0016 Score=65.54 Aligned_cols=123 Identities=11% Similarity=0.131 Sum_probs=68.5
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh-------CCcEEEEechhhhh-------h---------hhcchHHHHHHHHHHhH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC-------RMNFLAVKGPELLN-------K---------YIGQSEENIRNVFLKAR 290 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~-------~~~~~~v~~~~l~~-------~---------~~g~~~~~~~~~~~~a~ 290 (478)
|..++|+||+|+||||++..+|..+ +..+..+++..+.. . ........+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 6679999999999999999998765 23444444332210 0 1122333344444443
Q ss_pred hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCC-CCeEEEEEcCCCCCCCccccCC--CCCCeEEEe
Q psy450 291 SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTS-QDVFILGATNRVDLLDPAILRP--GRLDKSLYV 367 (478)
Q Consensus 291 ~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~v~vI~ttn~~~~ld~~l~~~--~Rf~~~i~~ 367 (478)
....+|+||.+...... ...+..+...++..... ..++|+.+|.....+...+.+- -.++..|.-
T Consensus 253 -~~~DlVLIDTaGr~~~~-----------~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~T 320 (388)
T PRK12723 253 -KDFDLVLVDTIGKSPKD-----------FMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFT 320 (388)
T ss_pred -CCCCEEEEcCCCCCccC-----------HHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEE
Confidence 34579999998766421 11234444444433322 3567777777665555444431 124555655
Q ss_pred CC
Q psy450 368 GL 369 (478)
Q Consensus 368 ~~ 369 (478)
.+
T Consensus 321 Kl 322 (388)
T PRK12723 321 KL 322 (388)
T ss_pred ec
Confidence 54
No 345
>KOG3347|consensus
Probab=97.58 E-value=0.00016 Score=61.09 Aligned_cols=33 Identities=30% Similarity=0.707 Sum_probs=29.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEe
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVK 266 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~ 266 (478)
..+||++|-||||||+++..+|..++.+++.++
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 456999999999999999999999998876654
No 346
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.57 E-value=0.0022 Score=65.59 Aligned_cols=72 Identities=24% Similarity=0.269 Sum_probs=45.6
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhh-------h--------hhc-----chHHHHHHHHHHh
Q psy450 233 KRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLN-------K--------YIG-----QSEENIRNVFLKA 289 (478)
Q Consensus 233 ~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~-------~--------~~g-----~~~~~~~~~~~~a 289 (478)
+|..++++|++|+||||++..+|..+ +.++..+++..+.. . ..+ .....+...+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 37789999999999999999998877 55666666533211 0 011 1122244455555
Q ss_pred HhCCCeEEEEcCCcccc
Q psy450 290 RSAAPCVVFFDELDSLA 306 (478)
Q Consensus 290 ~~~~p~il~iDeid~l~ 306 (478)
... .+|+||..-.+.
T Consensus 174 ~~~--DvVIIDTAGr~~ 188 (437)
T PRK00771 174 KKA--DVIIVDTAGRHA 188 (437)
T ss_pred hcC--CEEEEECCCccc
Confidence 443 699999865543
No 347
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.57 E-value=0.00014 Score=65.64 Aligned_cols=151 Identities=18% Similarity=0.221 Sum_probs=70.0
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCC
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQS 315 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~ 315 (478)
-++++||+|||||.+|-.+|+.+|.+++..+.-.......-.+.+....-+ + .- .=++|||-..-.+.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el---~-~~-~RiyL~~r~l~~G~------- 70 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSEL---K-GT-RRIYLDDRPLSDGI------- 70 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGG---T-T--EEEES----GGG-S-------
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHH---c-cc-ceeeeccccccCCC-------
Confidence 378999999999999999999999999999986665543322222211111 1 11 23778764332211
Q ss_pred chhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccC---CCCCCeEE-EeCCCCCHHHHHHHHHHHHhcCCCCC
Q psy450 316 SGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILR---PGRLDKSL-YVGLYEDRISQLGVLKAVVRKFKLSD 391 (478)
Q Consensus 316 ~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~---~~Rf~~~i-~~~~pp~~~~r~~il~~~~~~~~~~~ 391 (478)
-...+....|+..++.....+.+++=+-+ .+.+..-..+ ...|...+ .+++ |+++....-.+...+++-.++
T Consensus 71 -i~a~ea~~~Li~~v~~~~~~~~~IlEGGS--ISLl~~m~~~~~w~~~f~w~i~rl~l-~d~~~f~~ra~~Rv~~ML~p~ 146 (233)
T PF01745_consen 71 -INAEEAHERLISEVNSYSAHGGLILEGGS--ISLLNCMAQDPYWSLDFRWHIRRLRL-PDEEVFMARAKRRVRQMLRPD 146 (233)
T ss_dssp ---HHHHHHHHHHHHHTTTTSSEEEEEE----HHHHHHHHH-TTTSSSSEEEEEE------HHHHHHHHHHHHHHHHS--
T ss_pred -cCHHHHHHHHHHHHHhccccCceEEeCch--HHHHHHHHhcccccCCCeEEEEEEEC-CChHHHHHHHHHHHHHhcCCC
Confidence 11245667777778777663333333332 2222211111 01455444 4555 577666555555554443322
Q ss_pred C---CCHHHHHHhc
Q psy450 392 D---VSLDSLVHHF 402 (478)
Q Consensus 392 ~---~~~~~la~~~ 402 (478)
+ .-+++++...
T Consensus 147 ~~~~Sll~EL~~lW 160 (233)
T PF01745_consen 147 SSGPSLLEELVALW 160 (233)
T ss_dssp SSS--HHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 1 2266666554
No 348
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.56 E-value=0.0016 Score=64.05 Aligned_cols=134 Identities=16% Similarity=0.196 Sum_probs=85.9
Q ss_pred hhhhhHHHHhhhhcC----CCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe---------eC
Q psy450 30 HHLNDIVKINLKKYN----LDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL---------IR 96 (478)
Q Consensus 30 ~~~~~if~~~a~~~~----p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via---------ld 96 (478)
..+|.+|+ .|++.. ..|||+|||+.+-+.. .-.||--| .++.|++|| ++
T Consensus 87 kdlr~i~e-~a~~~~~~gr~tiLflDEIHRfnK~Q-QD~lLp~v----------------E~G~iilIGATTENPsF~ln 148 (436)
T COG2256 87 KDLREIIE-EARKNRLLGRRTILFLDEIHRFNKAQ-QDALLPHV----------------ENGTIILIGATTENPSFELN 148 (436)
T ss_pred HHHHHHHH-HHHHHHhcCCceEEEEehhhhcChhh-hhhhhhhh----------------cCCeEEEEeccCCCCCeeec
Confidence 46888998 896644 4899999999886544 12233223 367799999 99
Q ss_pred HhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCC-----CChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcC
Q psy450 97 KQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYG-----FDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGI 171 (478)
Q Consensus 97 ~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~-----~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~ 171 (478)
+||++|- +++.+..-+.++-.+++++-+...+..+. .+.+..+.++..++ +|.+..++..-..+...+
T Consensus 149 ~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~----GD~R~aLN~LE~~~~~~~-- 221 (436)
T COG2256 149 PALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSN----GDARRALNLLELAALSAE-- 221 (436)
T ss_pred HHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcC----chHHHHHHHHHHHHHhcC--
Confidence 9999998 67888889999999999984433322333 34444477777666 455555544433332211
Q ss_pred CCCCCCHHHHHHHHHHh
Q psy450 172 NKRDLQKEDFQQIYDDL 188 (478)
Q Consensus 172 ~~~~it~~d~~~a~~~~ 188 (478)
....+..+++...+.+.
T Consensus 222 ~~~~~~~~~l~~~l~~~ 238 (436)
T COG2256 222 PDEVLILELLEEILQRR 238 (436)
T ss_pred CCcccCHHHHHHHHhhh
Confidence 11133455555555544
No 349
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.56 E-value=0.00028 Score=67.43 Aligned_cols=94 Identities=22% Similarity=0.308 Sum_probs=55.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhCC----------cEEEEe-chhhhhhhhcc-------------hHHHHHHHHHHhH
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECRM----------NFLAVK-GPELLNKYIGQ-------------SEENIRNVFLKAR 290 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~~----------~~~~v~-~~~l~~~~~g~-------------~~~~~~~~~~~a~ 290 (478)
.++++.||+|+||||+.++++..+.. .+..++ ..++...+.+- .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 57999999999999999999987732 222222 22332221111 1111334555666
Q ss_pred hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q psy450 291 SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRV 348 (478)
Q Consensus 291 ~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~ 348 (478)
...|.++++||+.. ...+..++..+. .+..+|+++..+
T Consensus 192 ~~~P~villDE~~~---------------~e~~~~l~~~~~-----~G~~vI~ttH~~ 229 (270)
T TIGR02858 192 SMSPDVIVVDEIGR---------------EEDVEALLEALH-----AGVSIIATAHGR 229 (270)
T ss_pred hCCCCEEEEeCCCc---------------HHHHHHHHHHHh-----CCCEEEEEechh
Confidence 68899999999521 223444444442 245677777754
No 350
>PRK10536 hypothetical protein; Provisional
Probab=97.56 E-value=0.0011 Score=62.24 Aligned_cols=48 Identities=25% Similarity=0.279 Sum_probs=32.7
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHH
Q psy450 202 PNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATE 257 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~ 257 (478)
....+..+.+.......+...+.. ...++++||+|||||++|.+++..
T Consensus 50 ~~~~~~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 50 DSRDTSPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred hhcCCccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 344455566655555555544422 225899999999999999999874
No 351
>PRK06762 hypothetical protein; Provisional
Probab=97.56 E-value=0.00036 Score=61.84 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=31.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN 272 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~ 272 (478)
|.-++++|+||+||||+|+.+++.++..++.++...+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~ 40 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR 40 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH
Confidence 345889999999999999999999976677777666554
No 352
>KOG1051|consensus
Probab=97.55 E-value=0.00074 Score=73.55 Aligned_cols=162 Identities=20% Similarity=0.293 Sum_probs=102.0
Q ss_pred cccccCc-HHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh----------CCcEEEEechhhh--h
Q psy450 206 WEDIGGL-SKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC----------RMNFLAVKGPELL--N 272 (478)
Q Consensus 206 ~~~i~g~-~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~----------~~~~~~v~~~~l~--~ 272 (478)
.+.+.|. ++..+.+.+.+.. +. .++-+|.|.||+|||.++.-+++.. +..++.++...+. .
T Consensus 185 ldPvigr~deeirRvi~iL~R---rt---k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa 258 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR---KT---KNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGA 258 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc---cC---CCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCc
Confidence 4556564 4444444443321 11 3568999999999999999999876 3456666665443 3
Q ss_pred hhhcchHHHHHHHHHHhH-hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC--
Q psy450 273 KYIGQSEENIRNVFLKAR-SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD-- 349 (478)
Q Consensus 273 ~~~g~~~~~~~~~~~~a~-~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~-- 349 (478)
++-|+.+..++.+...+. .....|||+||++-+.+.... .+ .....+.| +.+- ..+.+++|+||..-.
T Consensus 259 ~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~----~~-~~d~~nlL-kp~L---~rg~l~~IGatT~e~Y~ 329 (898)
T KOG1051|consen 259 KRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN----YG-AIDAANLL-KPLL---ARGGLWCIGATTLETYR 329 (898)
T ss_pred ccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc----ch-HHHHHHhh-HHHH---hcCCeEEEecccHHHHH
Confidence 456778888999998877 445678899999999865422 11 11222222 2221 234488998877432
Q ss_pred ---CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhc
Q psy450 350 ---LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRK 386 (478)
Q Consensus 350 ---~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~ 386 (478)
.-+|++-+ ||+.. .++. |+.+.-..||...-.+
T Consensus 330 k~iekdPalEr--rw~l~-~v~~-pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 330 KCIEKDPALER--RWQLV-LVPI-PSVENLSLILPGLSER 365 (898)
T ss_pred HHHhhCcchhh--Cccee-Eecc-Ccccchhhhhhhhhhh
Confidence 24889999 99744 4555 4555555667665544
No 353
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.55 E-value=8.6e-05 Score=66.19 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=29.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEe
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVK 266 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~ 266 (478)
+..|+|+|+||||||++|+.+|+.++.+++..+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 567999999999999999999999998887543
No 354
>KOG2543|consensus
Probab=97.54 E-value=0.0022 Score=62.68 Aligned_cols=158 Identities=15% Similarity=0.197 Sum_probs=88.8
Q ss_pred cccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhh--------------
Q psy450 208 DIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK-------------- 273 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~-------------- 273 (478)
.+.+.+.+...|...+.. .....|.++.|+|-+|||||.+.+.+.+.++.+.+++++-+...-
T Consensus 7 ~v~~Re~qi~~L~~Llg~---~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~ 83 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGN---NSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLA 83 (438)
T ss_pred CccchHHHHHHHHHHhCC---CCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccC
Confidence 345566666666654422 122237888999999999999999999999999999988554211
Q ss_pred -hhcc----hHHHHHH---HHHH---hHhC-CCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEE
Q psy450 274 -YIGQ----SEENIRN---VFLK---ARSA-APCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFI 341 (478)
Q Consensus 274 -~~g~----~~~~~~~---~~~~---a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~v 341 (478)
..|. ...++.. .|.+ +.+. ..-.|++|.+|.+-... ..++..++...+ +.....+.+
T Consensus 84 d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~----------a~ll~~l~~L~e-l~~~~~i~i 152 (438)
T KOG2543|consen 84 DKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMD----------AILLQCLFRLYE-LLNEPTIVI 152 (438)
T ss_pred CCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccc----------hHHHHHHHHHHH-HhCCCceEE
Confidence 1111 1122222 2222 1222 34688899999986221 123444443322 223334444
Q ss_pred EEEcCCCCCCCccccCCCCCC-eEEEeCCCCCHHHHHHHHHH
Q psy450 342 LGATNRVDLLDPAILRPGRLD-KSLYVGLYEDRISQLGVLKA 382 (478)
Q Consensus 342 I~ttn~~~~ld~~l~~~~Rf~-~~i~~~~pp~~~~r~~il~~ 382 (478)
+.+...++. .-..+-|-++ ..++||- ++.++-..|+..
T Consensus 153 ils~~~~e~--~y~~n~g~~~i~~l~fP~-Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 153 ILSAPSCEK--QYLINTGTLEIVVLHFPQ-YSVEETQVILSR 191 (438)
T ss_pred EEeccccHH--HhhcccCCCCceEEecCC-CCHHHHHHHHhc
Confidence 443333221 1222234444 4567776 578887777754
No 355
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.54 E-value=6.7e-05 Score=66.55 Aligned_cols=23 Identities=43% Similarity=0.764 Sum_probs=20.5
Q ss_pred eEEEeCCCCChHHHHHHHHHHHh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999887
No 356
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0012 Score=65.95 Aligned_cols=158 Identities=15% Similarity=0.188 Sum_probs=105.3
Q ss_pred HHHHHHHHh-----hccCccchhhhhHHHHhhhhcCCCeEEEecccccccch--hhHhhhccccccccccccchhhhccC
Q psy450 14 DILSHLLTN-----YFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK--YVYFKLCSFDSVNVKSNETKDQQCKQ 86 (478)
Q Consensus 14 ~~l~~~~~~-----~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r--~~~~~l~~~d~~~~~~~~~~~~~~~~ 86 (478)
+++..++.+ ..+.+....++.+++-..+.....|+.+||+|.|.... .++.++...+. .
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~--------------~ 153 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGE--------------N 153 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccc--------------c
Confidence 455556653 34555566667677623344678999999999999985 66666655552 1
Q ss_pred CCcEEEEe----------eCHhHHhcc-ccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHH---hcCCCCHH
Q psy450 87 QHKKKLVL----------IRKQIQKLF-LKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSS---VTSGFERH 152 (478)
Q Consensus 87 ~~~v~via----------ld~al~rRf-~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~---~t~G~s~~ 152 (478)
..+|.||+ +||-+.++| ...|.|++.+.+|-..|++...+..-.+...+.+.++.+|. ...| ...
T Consensus 154 ~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR 232 (366)
T COG1474 154 KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DAR 232 (366)
T ss_pred ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHH
Confidence 44567777 788888876 45689999999999999999986521122333344344444 3344 334
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhh
Q psy450 153 DLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQ 189 (478)
Q Consensus 153 di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~ 189 (478)
---.+++.|+..|-.+ ....++.++...|...+.
T Consensus 233 ~aidilr~A~eiAe~~---~~~~v~~~~v~~a~~~~~ 266 (366)
T COG1474 233 KAIDILRRAGEIAERE---GSRKVSEDHVREAQEEIE 266 (366)
T ss_pred HHHHHHHHHHHHHHhh---CCCCcCHHHHHHHHHHhh
Confidence 4455677777766543 678899999998866554
No 357
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.54 E-value=0.00028 Score=68.81 Aligned_cols=60 Identities=20% Similarity=0.380 Sum_probs=50.6
Q ss_pred ccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC-CcEEEEe
Q psy450 207 EDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR-MNFLAVK 266 (478)
Q Consensus 207 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~-~~~~~v~ 266 (478)
+++.|+++.+.++...+....++.+...+-++|.||+|+|||++++.+-+.+. .+++.+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~ 121 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLK 121 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEec
Confidence 48999999999999999988887777788899999999999999999988773 3444443
No 358
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.54 E-value=0.00025 Score=64.58 Aligned_cols=122 Identities=16% Similarity=0.131 Sum_probs=57.3
Q ss_pred EEEeCCCCChHHHHHHHH-HHH-h--CCcEEEEechhhhhhhhcc----hHH-------------HHHHHHHHhHhCCCe
Q psy450 237 LLLYGPPGTGKTLIAKAV-ATE-C--RMNFLAVKGPELLNKYIGQ----SEE-------------NIRNVFLKARSAAPC 295 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~l-a~~-~--~~~~~~v~~~~l~~~~~g~----~~~-------------~~~~~~~~a~~~~p~ 295 (478)
.+++|.||+|||+.|-.. ... + |.+++. +...+--..... ... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999977554 332 2 555544 433222111100 000 001111111111457
Q ss_pred EEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCC
Q psy450 296 VVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGL 369 (478)
Q Consensus 296 il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~ 369 (478)
+|+|||++.+.+.+...+.. ....+..+...+ ..+.-|+.+|.+|..+|+.++. ..+..+.+.-
T Consensus 82 liviDEa~~~~~~r~~~~~~-------~~~~~~~l~~hR-h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k 145 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKK-------VPEIIEFLAQHR-HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRK 145 (193)
T ss_dssp EEEETTGGGTSB---T-T-----------HHHHGGGGCC-CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE
T ss_pred EEEEECChhhcCCCcccccc-------chHHHHHHHHhC-cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEe
Confidence 99999999999876431111 122223443322 3357788899999999999987 7777776654
No 359
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.53 E-value=0.0002 Score=68.95 Aligned_cols=99 Identities=26% Similarity=0.408 Sum_probs=62.0
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC---CcEEEEe-chhhhhh----
Q psy450 202 PNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR---MNFLAVK-GPELLNK---- 273 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~---~~~~~v~-~~~l~~~---- 273 (478)
...++++++-.....+.+.+.+...... ..++++.||+|+||||+++++...+. ..++.+. ..++.-.
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~~----~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~ 174 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVRG----RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQ 174 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHHT----TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSE
T ss_pred ccccHhhccCchhhHHHHHHHHhhcccc----ceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccce
Confidence 4456777777666666666666655332 55799999999999999999998773 3444443 2222111
Q ss_pred --hhc-chHHHHHHHHHHhHhCCCeEEEEcCCcc
Q psy450 274 --YIG-QSEENIRNVFLKARSAAPCVVFFDELDS 304 (478)
Q Consensus 274 --~~g-~~~~~~~~~~~~a~~~~p~il~iDeid~ 304 (478)
... .......+++..+....|+++++.|+-.
T Consensus 175 ~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 175 IQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp EEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred EEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 001 1233466778888889999999999743
No 360
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.53 E-value=0.00072 Score=63.61 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=29.4
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEec
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKG 267 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~ 267 (478)
|.+ +..++++|+||+|||+++..++... +.++++++.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 555 6678899999999999999997553 667777765
No 361
>PHA02624 large T antigen; Provisional
Probab=97.52 E-value=0.00026 Score=73.64 Aligned_cols=122 Identities=21% Similarity=0.189 Sum_probs=72.6
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCC
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRR 309 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~ 309 (478)
|.+ .+.++|+||||||||+++.+|++.++...+.++++.-.+. . -+.-+... .+.+|||+-.-....
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~-------F---wL~pl~D~--~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN-------F---ELGCAIDQ--FMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH-------H---Hhhhhhhc--eEEEeeecccccccc
Confidence 444 5679999999999999999999999777777875432111 0 11112222 388899975433211
Q ss_pred CCCCCCchhHHHHHHHHHHhhcCC-CC------CCC-----eEEEEEcCCCCCCCccccCCCCCCeEEEeCC
Q psy450 310 GQEDQSSGVMDRVVSQLLAEMDGV-HT------SQD-----VFILGATNRVDLLDPAILRPGRLDKSLYVGL 369 (478)
Q Consensus 310 ~~~~~~~~~~~~~~~~ll~~l~~~-~~------~~~-----v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~ 369 (478)
.. -..|..-.-+..|-+.+||- .- ..+ -..|.|||. +.+|..+.- ||-..+.|..
T Consensus 495 ~~--Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 495 KD--LPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred cc--CCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 00 00110011124455666764 11 001 124667776 778889988 9999999974
No 362
>PRK14974 cell division protein FtsY; Provisional
Probab=97.52 E-value=0.0017 Score=64.04 Aligned_cols=73 Identities=18% Similarity=0.232 Sum_probs=45.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhh-------hhh---h---------c-chHHHHHHHHHHhH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELL-------NKY---I---------G-QSEENIRNVFLKAR 290 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~-------~~~---~---------g-~~~~~~~~~~~~a~ 290 (478)
|.-++|+||+|+||||++..+|..+ +.++..+++..+. ..+ . + .....+...+..+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~ 219 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK 219 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH
Confidence 6678999999999999888888765 4455555543211 000 0 1 11122334444555
Q ss_pred hCCCeEEEEcCCcccc
Q psy450 291 SAAPCVVFFDELDSLA 306 (478)
Q Consensus 291 ~~~p~il~iDeid~l~ 306 (478)
.....+|+||....+.
T Consensus 220 ~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 220 ARGIDVVLIDTAGRMH 235 (336)
T ss_pred hCCCCEEEEECCCccC
Confidence 5556799999976664
No 363
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.52 E-value=0.0003 Score=63.86 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=46.7
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh--------CCcEEEEec-hhhhhhhhcc-------------hHHHHHHHHHHhHhC
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC--------RMNFLAVKG-PELLNKYIGQ-------------SEENIRNVFLKARSA 292 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~--------~~~~~~v~~-~~l~~~~~g~-------------~~~~~~~~~~~a~~~ 292 (478)
.+.|+.|||||||||+.|-+|..+ +..+..++- +++.....|. ..-.-..++...+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 358999999999999999998865 233444443 3333222221 122233455666889
Q ss_pred CCeEEEEcCCccc
Q psy450 293 APCVVFFDELDSL 305 (478)
Q Consensus 293 ~p~il~iDeid~l 305 (478)
.|.|+++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999998654
No 364
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.52 E-value=0.00075 Score=61.75 Aligned_cols=69 Identities=17% Similarity=0.383 Sum_probs=41.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh-----CCcE-------------EEEechhhhhh---hhcchHHHHHHHHHHhHhCC
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC-----RMNF-------------LAVKGPELLNK---YIGQSEENIRNVFLKARSAA 293 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~-----~~~~-------------~~v~~~~l~~~---~~g~~~~~~~~~~~~a~~~~ 293 (478)
.-++|+||+|+||||+++.++... |.++ ..++..+-... ........+..+++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 458899999999999999998533 4322 11111111100 00111234566666665457
Q ss_pred CeEEEEcCCc
Q psy450 294 PCVVFFDELD 303 (478)
Q Consensus 294 p~il~iDeid 303 (478)
|.++++||.-
T Consensus 106 p~llllDEp~ 115 (199)
T cd03283 106 PVLFLLDEIF 115 (199)
T ss_pred CeEEEEeccc
Confidence 8999999953
No 365
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.51 E-value=0.00017 Score=65.92 Aligned_cols=67 Identities=22% Similarity=0.379 Sum_probs=42.9
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCC----cEEEEec-hhhhhh---------hhcchHHHHHHHHHHhHhCCCeEEEEcC
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRM----NFLAVKG-PELLNK---------YIGQSEENIRNVFLKARSAAPCVVFFDE 301 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~----~~~~v~~-~~l~~~---------~~g~~~~~~~~~~~~a~~~~p~il~iDe 301 (478)
-+++.||+|+||||++++++..+.. .++.+.. .++... ..|.....+...+..+....|.++++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3789999999999999999887742 2233221 111100 0122223355566677777899999999
Q ss_pred C
Q psy450 302 L 302 (478)
Q Consensus 302 i 302 (478)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 6
No 366
>PRK08727 hypothetical protein; Validated
Probab=97.50 E-value=0.002 Score=60.54 Aligned_cols=125 Identities=8% Similarity=0.082 Sum_probs=81.0
Q ss_pred CCCeEEEecccccccch-hhHhhhccccccccccccchhhhccCCCcEEEEe---------eCHhHHhcc--ccEEEeCC
Q psy450 44 NLDIFKYDEVNYLCNVK-YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL---------IRKQIQKLF--LKTINVLP 111 (478)
Q Consensus 44 ~p~ilfiDe~d~i~~~r-~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via---------ld~al~rRf--~~~i~~~~ 111 (478)
+..+|+|||++.+.+.. ....++..++.. ...+..|++.+ ++|++.+|| -..+.++.
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~-----------~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~ 161 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRA-----------RAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPV 161 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHH-----------HHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecC
Confidence 56899999999998655 222333333421 12234566666 689999997 56789999
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q psy450 112 LTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYD 186 (478)
Q Consensus 112 P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~ 186 (478)
|+.++|.+|++.+.... .+..+.+.++.|+..++|- ...+.+++......+.. .+.++|...+.+.+.
T Consensus 162 ~~~e~~~~iL~~~a~~~--~l~l~~e~~~~La~~~~rd-~r~~l~~L~~l~~~~~~----~~~~it~~~~~~~l~ 229 (233)
T PRK08727 162 LDDVARAAVLRERAQRR--GLALDEAAIDWLLTHGERE-LAGLVALLDRLDRESLA----AKRRVTVPFLRRVLE 229 (233)
T ss_pred CCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHH----hCCCCCHHHHHHHHh
Confidence 99999999999987665 4556666779999987732 23333334433322221 234677776665554
No 367
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.50 E-value=0.00065 Score=58.81 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=21.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
+..++++||+|||||++.+++|.-.
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhcc
Confidence 3458999999999999999999854
No 368
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.49 E-value=0.00034 Score=66.93 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=59.6
Q ss_pred CCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC---CcEEEEe-chhhhhh------
Q psy450 204 VSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR---MNFLAVK-GPELLNK------ 273 (478)
Q Consensus 204 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~---~~~~~v~-~~~l~~~------ 273 (478)
.++++++-.+...+.+.+++... ...+++.||+|+||||+++++...+. ..++.+. ..++.-.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~~-------~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~ 129 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEKP-------HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQ 129 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhcC-------CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEE
Confidence 45777777777776666554322 23489999999999999999977663 2344442 2222110
Q ss_pred hhcchHHHHHHHHHHhHhCCCeEEEEcCCc
Q psy450 274 YIGQSEENIRNVFLKARSAAPCVVFFDELD 303 (478)
Q Consensus 274 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid 303 (478)
............+..+....|++|+++|+-
T Consensus 130 v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 130 VNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred eCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 001111235667777788899999999974
No 369
>KOG0477|consensus
Probab=97.48 E-value=9.2e-05 Score=75.84 Aligned_cols=152 Identities=20% Similarity=0.234 Sum_probs=79.4
Q ss_pred cccCcHHHHHHHHHHHHhh-hhhCCC--C---CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHH
Q psy450 208 DIGGLSKLKAEILSTFRGV-NRTSGL--K---RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEEN 281 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~-~~~~~~--~---~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~ 281 (478)
.|.|.+.+|..+.-.+-.- ....+. + -.++||.|.||||||..++.+++.....++...- ....+|.+...
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGq---GASavGLTa~v 526 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQ---GASAVGLTAYV 526 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccC---CccccceeEEE
Confidence 5788888888776444322 111111 1 3469999999999999999999887666554321 01111211111
Q ss_pred HHH----HH-HHh---HhCCCeEEEEcCCccccCCCCCCCCCchhHHHH---HHHHHHhhcCCCCCCCeEEEEEcCCC--
Q psy450 282 IRN----VF-LKA---RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRV---VSQLLAEMDGVHTSQDVFILGATNRV-- 348 (478)
Q Consensus 282 ~~~----~~-~~a---~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~---~~~ll~~l~~~~~~~~v~vI~ttn~~-- 348 (478)
.+. -| -.+ .....+|-+|||+|++....-.+-...-..+.+ ...+.+.+ +.+..||+++|..
T Consensus 527 ~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsL-----qArctvIAAanPigG 601 (854)
T KOG0477|consen 527 RKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSL-----QARCTVIAAANPIGG 601 (854)
T ss_pred eeCCccceeeeccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHH-----HhhhhhheecCCCCC
Confidence 111 00 000 112235888999999974311000000000000 00011111 2346689999873
Q ss_pred -C----------CCCccccCCCCCCeEEEeCC
Q psy450 349 -D----------LLDPAILRPGRLDKSLYVGL 369 (478)
Q Consensus 349 -~----------~ld~~l~~~~Rf~~~i~~~~ 369 (478)
+ .+-..+++ |||....+..
T Consensus 602 RY~~s~tFaqNV~ltePIlS--RFDiLcVvkD 631 (854)
T KOG0477|consen 602 RYNPSLTFAQNVDLTEPILS--RFDILCVVKD 631 (854)
T ss_pred ccCCccchhhccccccchhh--hcceeeeeec
Confidence 1 35567888 9997766655
No 370
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.0023 Score=63.68 Aligned_cols=72 Identities=17% Similarity=0.187 Sum_probs=46.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhh-------hhh---------hcchHHHHHHHHHHhHh-CC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELL-------NKY---------IGQSEENIRNVFLKARS-AA 293 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~-------~~~---------~g~~~~~~~~~~~~a~~-~~ 293 (478)
++.++|.||+|+||||++..+|..+ +..+..+++.... ..| ...+...+...+..+.. ..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 5679999999999999999998776 3455555542221 111 12345555666655543 23
Q ss_pred CeEEEEcCCccc
Q psy450 294 PCVVFFDELDSL 305 (478)
Q Consensus 294 p~il~iDeid~l 305 (478)
..+|+||-....
T Consensus 321 ~DvVLIDTaGRs 332 (436)
T PRK11889 321 VDYILIDTAGKN 332 (436)
T ss_pred CCEEEEeCcccc
Confidence 579999975543
No 371
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.47 E-value=0.00053 Score=64.06 Aligned_cols=115 Identities=16% Similarity=0.137 Sum_probs=61.4
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh---C------CcEEEEechhhh-----hh---hh---------------cc
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC---R------MNFLAVKGPELL-----NK---YI---------------GQ 277 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~---~------~~~~~v~~~~l~-----~~---~~---------------g~ 277 (478)
|.+ ..-+.|+||||+|||+++..++... + ..+++++..+-. .. .. ..
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 444 4557899999999999999997653 3 566777654310 00 00 01
Q ss_pred hHHHHHHHHHHh----HhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEc
Q psy450 278 SEENIRNVFLKA----RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGAT 345 (478)
Q Consensus 278 ~~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~tt 345 (478)
+...+...+... ....+.+|+||-+..+...............+.+..++..+..+....++.||.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tn 166 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTN 166 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEE
Confidence 111222233322 24567899999999886432111110111123344444444444344566666554
No 372
>PRK13947 shikimate kinase; Provisional
Probab=97.46 E-value=0.00012 Score=65.22 Aligned_cols=31 Identities=39% Similarity=0.576 Sum_probs=28.4
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEe
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVK 266 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~ 266 (478)
+|++.|+||||||++++.+|+.++.+++..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999987654
No 373
>PRK03839 putative kinase; Provisional
Probab=97.44 E-value=0.00012 Score=65.80 Aligned_cols=31 Identities=26% Similarity=0.518 Sum_probs=27.8
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEe
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVK 266 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~ 266 (478)
.|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999886654
No 374
>PRK00625 shikimate kinase; Provisional
Probab=97.43 E-value=0.00014 Score=64.91 Aligned_cols=31 Identities=32% Similarity=0.487 Sum_probs=28.6
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEe
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVK 266 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~ 266 (478)
+|+|+|.||+|||++++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999987765
No 375
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.41 E-value=0.0025 Score=59.19 Aligned_cols=105 Identities=12% Similarity=0.187 Sum_probs=70.8
Q ss_pred CCCeEEEecccccccch-hhHhhhccccccccccccchhhhccCCCcEEEEe---------eCHhHHhcccc--EEEeCC
Q psy450 44 NLDIFKYDEVNYLCNVK-YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL---------IRKQIQKLFLK--TINVLP 111 (478)
Q Consensus 44 ~p~ilfiDe~d~i~~~r-~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via---------ld~al~rRf~~--~i~~~~ 111 (478)
...+|+||+++.+.++. ....++..++.+. ..+..+++.+ ++|.+.+||.. .+.+..
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~-----------~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~ 165 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLI-----------ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQP 165 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHH-----------HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE--
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHH-----------hhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCC
Confidence 67899999999998875 3344455555431 3345565555 78889999865 899999
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy450 112 LTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSV 162 (478)
Q Consensus 112 P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~ 162 (478)
||.+.|.+|++.+.... .+..+.+.++.|+...+ -+...+..++..-.
T Consensus 166 pd~~~r~~il~~~a~~~--~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 166 PDDEDRRRILQKKAKER--GIELPEEVIEYLARRFR-RDVRELEGALNRLD 213 (219)
T ss_dssp --HHHHHHHHHHHHHHT--T--S-HHHHHHHHHHTT-SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHH
Confidence 99999999999999887 44566777789998866 35666666665443
No 376
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.41 E-value=0.00053 Score=64.45 Aligned_cols=116 Identities=12% Similarity=0.164 Sum_probs=61.2
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh---------CCcEEEEechhhhh-h---------------h-----h--cc
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC---------RMNFLAVKGPELLN-K---------------Y-----I--GQ 277 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~---------~~~~~~v~~~~l~~-~---------------~-----~--g~ 277 (478)
|.+ ..-+.|+||||||||+++..++... +..+++++..+-.. . . . ..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 444 4557899999999999999997543 25677777543100 0 0 0 00
Q ss_pred hHHH----HHHHHHHhHhC-CCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcC
Q psy450 278 SEEN----IRNVFLKARSA-APCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATN 346 (478)
Q Consensus 278 ~~~~----~~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn 346 (478)
+... +..+....... .+.+|+||-+..+...............+.+..++..+..+....++.|+.|..
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 1111 12222222344 789999999998753110011101112234445555554443445666776643
No 377
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.40 E-value=0.0022 Score=62.77 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=27.7
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh---------CCcEEEEech
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC---------RMNFLAVKGP 268 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~---------~~~~~~v~~~ 268 (478)
|.+ ..-+.++||||+|||+++..++-.. +...++++..
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE 139 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTE 139 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcC
Confidence 455 4457799999999999998876422 4567777753
No 378
>PRK13695 putative NTPase; Provisional
Probab=97.39 E-value=0.0017 Score=58.11 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.4
Q ss_pred eEEEeCCCCChHHHHHHHHHHHh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.++|+|++|+|||++++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999987765
No 379
>PF14516 AAA_35: AAA-like domain
Probab=97.39 E-value=0.0094 Score=59.11 Aligned_cols=162 Identities=15% Similarity=0.120 Sum_probs=84.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhh------------------hc-------------chH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKY------------------IG-------------QSE 279 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~------------------~g-------------~~~ 279 (478)
+..+.+.||..+|||++...+.+.+ |...+++++..+.... .+ .+.
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 4458999999999999998887655 6777777764432110 00 011
Q ss_pred HHHHHHHHHh---HhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC---CCCeEEEEEcCCCCCCCc
Q psy450 280 ENIRNVFLKA---RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT---SQDVFILGATNRVDLLDP 353 (478)
Q Consensus 280 ~~~~~~~~~a---~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---~~~v~vI~ttn~~~~ld~ 353 (478)
......|... ....|-||+|||+|.+.... ......+..+-.+.+.-.. ..++.+|.+...+..+..
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~-------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~ 183 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP-------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIIL 183 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCc-------chHHHHHHHHHHHHHhcccCcccceEEEEEecCccccccc
Confidence 1222333321 22468899999999998532 1112333333333221111 123333333322222222
Q ss_pred cc-cCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCC
Q psy450 354 AI-LRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMS 407 (478)
Q Consensus 354 ~l-~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~s 407 (478)
.. .+|..+...+.++. -+.++-..+++.+-. ...... ++.+-..+ +|+.
T Consensus 184 ~~~~SPFNIg~~i~L~~-Ft~~ev~~L~~~~~~--~~~~~~-~~~l~~~t-gGhP 233 (331)
T PF14516_consen 184 DINQSPFNIGQPIELPD-FTPEEVQELAQRYGL--EFSQEQ-LEQLMDWT-GGHP 233 (331)
T ss_pred CCCCCCcccccceeCCC-CCHHHHHHHHHhhhc--cCCHHH-HHHHHHHH-CCCH
Confidence 22 45545555555553 577777666665532 222222 66666655 6644
No 380
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.39 E-value=0.011 Score=59.94 Aligned_cols=72 Identities=13% Similarity=0.098 Sum_probs=46.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh---------------hh----c-chHHHHHHHHHHhH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK---------------YI----G-QSEENIRNVFLKAR 290 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~---------------~~----g-~~~~~~~~~~~~a~ 290 (478)
|.-++|+|++|+||||++..+|..+ |..+..+++..+... +. + .........+..++
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999998776 666666666332100 00 0 11222334555565
Q ss_pred hCCCeEEEEcCCccc
Q psy450 291 SAAPCVVFFDELDSL 305 (478)
Q Consensus 291 ~~~p~il~iDeid~l 305 (478)
.....+|+||=...+
T Consensus 180 ~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 180 KENFDIIIVDTSGRH 194 (429)
T ss_pred hCCCCEEEEECCCCC
Confidence 556679999975443
No 381
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.39 E-value=0.0023 Score=60.49 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=23.6
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRM 260 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~ 260 (478)
+..++|.||+|+|||++++.+++....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 455999999999999999999987754
No 382
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.39 E-value=0.00017 Score=62.87 Aligned_cols=31 Identities=26% Similarity=0.516 Sum_probs=27.8
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEe
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVK 266 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~ 266 (478)
+|+++|+||+|||++++.++..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3899999999999999999999999887554
No 383
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.0029 Score=58.48 Aligned_cols=133 Identities=11% Similarity=0.014 Sum_probs=89.5
Q ss_pred CceEEEeCCCC-ChHHHHHHHHHHHhCC---------cEEEEechhhhhh-hhcchHHHHHHHHHHhH----hCCCeEEE
Q psy450 234 RSGLLLYGPPG-TGKTLIAKAVATECRM---------NFLAVKGPELLNK-YIGQSEENIRNVFLKAR----SAAPCVVF 298 (478)
Q Consensus 234 ~~~iLl~Gp~G-tGKT~la~~la~~~~~---------~~~~v~~~~l~~~-~~g~~~~~~~~~~~~a~----~~~p~il~ 298 (478)
.+.+||.|..+ +||..++.-+++.+.. .++.+....-... ...-....+|++...+. .+..-|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 66799999998 9999999888877632 2444432110000 00113445565555442 33456999
Q ss_pred EcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHH
Q psy450 299 FDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLG 378 (478)
Q Consensus 299 iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~ 378 (478)
|+++|.+. ....+.||+.++. +..++++|.+|+.++.+.|.+++ |+ ..+.++. |....-.+
T Consensus 95 I~~ae~mt-------------~~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~-p~~~~~~e 155 (263)
T PRK06581 95 IYSAELMN-------------LNAANSCLKILED--APKNSYIFLITSRAASIISTIRS--RC-FKINVRS-SILHAYNE 155 (263)
T ss_pred EechHHhC-------------HHHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCC-CCHHHHHH
Confidence 99999997 4678999999995 55677888888889999999999 98 5677876 45554445
Q ss_pred HHHHHHh
Q psy450 379 VLKAVVR 385 (478)
Q Consensus 379 il~~~~~ 385 (478)
++...+.
T Consensus 156 ~~~~~~~ 162 (263)
T PRK06581 156 LYSQFIQ 162 (263)
T ss_pred HHHHhcc
Confidence 5544443
No 384
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.38 E-value=0.0013 Score=55.54 Aligned_cols=23 Identities=43% Similarity=0.534 Sum_probs=20.1
Q ss_pred eEEEeCCCCChHHHHHHHHHHHh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
+++++||+|+|||+++-.++..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 58999999999999888887665
No 385
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0013 Score=64.93 Aligned_cols=151 Identities=25% Similarity=0.406 Sum_probs=91.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC--CcEEEEechhhhhhh------hc--------chHHHHHHHHHHhHhCCCeEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR--MNFLAVKGPELLNKY------IG--------QSEENIRNVFLKARSAAPCVV 297 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~--~~~~~v~~~~l~~~~------~g--------~~~~~~~~~~~~a~~~~p~il 297 (478)
..-+|+-|.||.|||||+-.++..+. .+++|+++.+-..+. .+ ..+.++.++...+....|.++
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lv 172 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLV 172 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEE
Confidence 44577889999999998888877662 379999875543321 11 245567888888888999999
Q ss_pred EEcCCccccCCCCCCC-CCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC-CCCccccCCCCCCeEEEeCCCCCHHH
Q psy450 298 FFDELDSLAPRRGQED-QSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD-LLDPAILRPGRLDKSLYVGLYEDRIS 375 (478)
Q Consensus 298 ~iDeid~l~~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~-~ld~~l~~~~Rf~~~i~~~~pp~~~~ 375 (478)
+||-|+.+....-++. .+-...++....|+..-.. .+-.+++++=-..-. .-.|.++. .-.|..+||.- ++..
T Consensus 173 VIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~--~~i~~fiVGHVTKeG~IAGPrvLE-HmVDtVlyFEG--d~~~ 247 (456)
T COG1066 173 VIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKT--KNIAIFIVGHVTKEGAIAGPRVLE-HMVDTVLYFEG--DRHS 247 (456)
T ss_pred EEeccceeecccccCCCCcHHHHHHHHHHHHHHHHH--cCCeEEEEEEEcccccccCchhee-eeeeEEEEEec--cCCC
Confidence 9999999985542221 1222334555555554331 122344444333222 22445554 24566777763 5556
Q ss_pred HHHHHHHHHhcCCC
Q psy450 376 QLGVLKAVVRKFKL 389 (478)
Q Consensus 376 r~~il~~~~~~~~~ 389 (478)
..+|++..-..++.
T Consensus 248 ~~RiLR~vKNRFG~ 261 (456)
T COG1066 248 RYRILRSVKNRFGA 261 (456)
T ss_pred ceeeeehhcccCCc
Confidence 66677665544443
No 386
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.37 E-value=0.001 Score=73.00 Aligned_cols=145 Identities=12% Similarity=0.113 Sum_probs=91.4
Q ss_pred hhhhcCCCeEEEecccccccch---hhHhhhccccccccccccch--hhhccCCCcEEEEe------eCHhHHhccccEE
Q psy450 39 NLKKYNLDIFKYDEVNYLCNVK---YVYFKLCSFDSVNVKSNETK--DQQCKQQHKKKLVL------IRKQIQKLFLKTI 107 (478)
Q Consensus 39 ~a~~~~p~ilfiDe~d~i~~~r---~~~~~l~~~d~~~~~~~~~~--~~~~~~~~~v~via------ld~al~rRf~~~i 107 (478)
.+...+| |+||||+|.+.+.. ..+.++.-+|.-.+..-... ... -.-.+|++|| ++||++.|| ..|
T Consensus 412 ~~~~~~~-villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~-~dls~v~~i~TaN~~~i~~aLl~R~-~ii 488 (784)
T PRK10787 412 KVGVKNP-LFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVD-YDLSDVMFVATSNSMNIPAPLLDRM-EVI 488 (784)
T ss_pred hcCCCCC-EEEEEChhhcccccCCCHHHHHHHHhccccEEEEeccccccc-ccCCceEEEEcCCCCCCCHHHhcce-eee
Confidence 4443444 89999999998753 25677777773211100000 011 1235688888 999999999 579
Q ss_pred EeCCCCHHHHHHHHHHHHhh--c------CCCCCCChhHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhh----cCCCC
Q psy450 108 NVLPLTEPERRLLIQYQLDC--L------GGDYGFDASLVEYLSSV-TSGFERHDLTCLVRLSVKNKMLKQ----GINKR 174 (478)
Q Consensus 108 ~~~~P~~~~r~~il~~~~~~--~------~~~~~~~~~~i~~la~~-t~G~s~~di~~l~~~a~~~a~~~~----~~~~~ 174 (478)
.+..++.++..+|.+.++.. . +..+..+.+.++.++.. +..+....++..+...+...+.+. .....
T Consensus 489 ~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v 568 (784)
T PRK10787 489 RLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKHI 568 (784)
T ss_pred ecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence 99999999999999999942 1 11234455555677653 445666677777776666554331 22335
Q ss_pred CCCHHHHHHHHH
Q psy450 175 DLQKEDFQQIYD 186 (478)
Q Consensus 175 ~it~~d~~~a~~ 186 (478)
.++.+++...+.
T Consensus 569 ~v~~~~~~~~lg 580 (784)
T PRK10787 569 EINGDNLHDYLG 580 (784)
T ss_pred eecHHHHHHHhC
Confidence 677777665554
No 387
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.35 E-value=0.00062 Score=68.04 Aligned_cols=69 Identities=22% Similarity=0.346 Sum_probs=46.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhC-----CcEEEEec-hhhh-----------hhhhcchHHHHHHHHHHhHhCCCeEE
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECR-----MNFLAVKG-PELL-----------NKYIGQSEENIRNVFLKARSAAPCVV 297 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~-----~~~~~v~~-~~l~-----------~~~~g~~~~~~~~~~~~a~~~~p~il 297 (478)
..++++||+|+||||+++++..... .+++.+.- .++. ...+|.........+..+....|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 3589999999999999999987762 34555432 1221 01112222245567777788899999
Q ss_pred EEcCCc
Q psy450 298 FFDELD 303 (478)
Q Consensus 298 ~iDeid 303 (478)
++.|+-
T Consensus 230 ~vGEiR 235 (372)
T TIGR02525 230 GVGEIR 235 (372)
T ss_pred eeCCCC
Confidence 999974
No 388
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.35 E-value=0.00066 Score=60.03 Aligned_cols=70 Identities=21% Similarity=0.210 Sum_probs=42.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCC--cEEEEechhh--------hhhhhc----ch-HHHHHHHHHHhHhCCCeEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRM--NFLAVKGPEL--------LNKYIG----QS-EENIRNVFLKARSAAPCVVF 298 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~--~~~~v~~~~l--------~~~~~g----~~-~~~~~~~~~~a~~~~p~il~ 298 (478)
...+.|.||+|+|||++++.++..... --+.++..++ .....+ -+ ....+-.+..+....|.+++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ill 105 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLI 105 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEE
Confidence 445889999999999999999876521 1122222111 111111 11 12233455666778899999
Q ss_pred EcCCc
Q psy450 299 FDELD 303 (478)
Q Consensus 299 iDeid 303 (478)
+||--
T Consensus 106 lDEP~ 110 (163)
T cd03216 106 LDEPT 110 (163)
T ss_pred EECCC
Confidence 99954
No 389
>PRK13949 shikimate kinase; Provisional
Probab=97.34 E-value=0.00019 Score=63.82 Aligned_cols=31 Identities=35% Similarity=0.597 Sum_probs=28.7
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEe
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVK 266 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~ 266 (478)
.|+|.|+||+|||++++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5999999999999999999999999887765
No 390
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.32 E-value=0.0012 Score=58.63 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=45.6
Q ss_pred EEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhh-----------------hhcchHHHHHHHHHHhHhCCCeEEEE
Q psy450 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK-----------------YIGQSEENIRNVFLKARSAAPCVVFF 299 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~-----------------~~g~~~~~~~~~~~~a~~~~p~il~i 299 (478)
+|+.|++|+|||++|..++...+.+.+++....-... ...+....+.+.+.... .+.+++|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 6899999999999999999887778877764322111 01112223344442222 4569999
Q ss_pred cCCccccCC
Q psy450 300 DELDSLAPR 308 (478)
Q Consensus 300 Deid~l~~~ 308 (478)
|-+..+...
T Consensus 80 Dclt~~~~n 88 (169)
T cd00544 80 DCLTLWVTN 88 (169)
T ss_pred EcHhHHHHH
Confidence 999887644
No 391
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.32 E-value=0.0015 Score=61.05 Aligned_cols=107 Identities=25% Similarity=0.298 Sum_probs=60.7
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh----CCcEEEEechhhhhh--------------h-----------------
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC----RMNFLAVKGPELLNK--------------Y----------------- 274 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~----~~~~~~v~~~~l~~~--------------~----------------- 274 (478)
|.+ +..+|+.||||+|||+++..++... |.++++++..+-... +
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 444 5678999999999999998876433 788888775221110 0
Q ss_pred --hcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcC
Q psy450 275 --IGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATN 346 (478)
Q Consensus 275 --~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn 346 (478)
..........+.......++.+++||.+..+... ......+..+..+...+. ..++.++.+..
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~-----~~~~~~r~~l~~l~~~l~----~~~~t~llt~~ 159 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLY-----DDPEELRRFLRALIKFLK----SRGVTTLLTSE 159 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTS-----SSGGGHHHHHHHHHHHHH----HTTEEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhc-----CCHHHHHHHHHHHHHHHH----HCCCEEEEEEc
Confidence 0112223344444445567789999999998321 112223455566665553 23344454544
No 392
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.31 E-value=0.0011 Score=60.37 Aligned_cols=70 Identities=21% Similarity=0.281 Sum_probs=41.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhh-------hhh---h---------c-chHHHHHHHHHHhH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELL-------NKY---I---------G-QSEENIRNVFLKAR 290 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~-------~~~---~---------g-~~~~~~~~~~~~a~ 290 (478)
|+-++|.||+|+||||.+-.+|..+ +..+..++...+. ..| . . .......+.++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 4568999999999999888887765 4444444432211 110 0 1 12233455666666
Q ss_pred hCCCeEEEEcCCc
Q psy450 291 SAAPCVVFFDELD 303 (478)
Q Consensus 291 ~~~p~il~iDeid 303 (478)
..+..+|+||-..
T Consensus 81 ~~~~D~vlIDT~G 93 (196)
T PF00448_consen 81 KKGYDLVLIDTAG 93 (196)
T ss_dssp HTTSSEEEEEE-S
T ss_pred hcCCCEEEEecCC
Confidence 6555799999743
No 393
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.31 E-value=0.0016 Score=71.16 Aligned_cols=100 Identities=20% Similarity=0.283 Sum_probs=59.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh---C--CcEEEEechhh----hhhhhcchHHHHHHHHHHhH----------hCCCe
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC---R--MNFLAVKGPEL----LNKYIGQSEENIRNVFLKAR----------SAAPC 295 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~---~--~~~~~v~~~~l----~~~~~g~~~~~~~~~~~~a~----------~~~p~ 295 (478)
+-++++|+||||||++++++...+ + .+++.+....- +....|.....++.++.... .....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 358999999999999999987655 3 34443333221 22223333344455443211 12357
Q ss_pred EEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC
Q psy450 296 VVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDL 350 (478)
Q Consensus 296 il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 350 (478)
+|++||+..+. ...+..|+..+ ....++++++=.+....
T Consensus 419 llIvDEaSMvd-------------~~~~~~Ll~~~---~~~~rlilvGD~~QLps 457 (720)
T TIGR01448 419 LLIVDESSMMD-------------TWLALSLLAAL---PDHARLLLVGDTDQLPS 457 (720)
T ss_pred EEEEeccccCC-------------HHHHHHHHHhC---CCCCEEEEECccccccC
Confidence 99999998875 34556666543 34456777776555433
No 394
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.31 E-value=0.00057 Score=61.18 Aligned_cols=70 Identities=29% Similarity=0.231 Sum_probs=40.5
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCc--EEEEechhh--hhhhhcch-HHHHHHHHHHhHhCCCeEEEEcCCc
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMN--FLAVKGPEL--LNKYIGQS-EENIRNVFLKARSAAPCVVFFDELD 303 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~--~~~v~~~~l--~~~~~g~~-~~~~~~~~~~a~~~~p~il~iDeid 303 (478)
..-+.|.||+|+||||+++.++...... -+.++...+ ..+...-+ ....+-.+..+....|.++++||--
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 3457899999999999999999765211 122221110 01100011 1123334555666788999999954
No 395
>PRK14532 adenylate kinase; Provisional
Probab=97.31 E-value=0.00022 Score=64.64 Aligned_cols=36 Identities=36% Similarity=0.577 Sum_probs=29.1
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK 273 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~ 273 (478)
++++.||||+||||+++.+|+.+|..++ +..+++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 4899999999999999999999987654 45455544
No 396
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.30 E-value=0.0036 Score=58.42 Aligned_cols=129 Identities=17% Similarity=0.279 Sum_probs=70.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCC---cEEEEechhhhhh---h-----hcc--hHHH-----------HHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRM---NFLAVKGPELLNK---Y-----IGQ--SEEN-----------IRNVFLKA 289 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~---~~~~v~~~~l~~~---~-----~g~--~~~~-----------~~~~~~~a 289 (478)
+-.+++.|++|||||+++..+...+.. +++.+.. ..... + +.. .... +.+.....
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~-~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP-EYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec-CCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 446999999999999999998876643 2222221 11111 1 000 0001 11111111
Q ss_pred Hh---CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEE
Q psy450 290 RS---AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLY 366 (478)
Q Consensus 290 ~~---~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~ 366 (478)
.. ..+++|++||+..-. .-...+..++.. . ..-++.+|.++...-.+|+.++. -.+..+.
T Consensus 92 ~~~k~~~~~LiIlDD~~~~~-----------~k~~~l~~~~~~---g-RH~~is~i~l~Q~~~~lp~~iR~--n~~y~i~ 154 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDKK-----------LKSKILRQFFNN---G-RHYNISIIFLSQSYFHLPPNIRS--NIDYFII 154 (241)
T ss_pred cccCCCCCeEEEEeCCCCch-----------hhhHHHHHHHhc---c-cccceEEEEEeeecccCCHHHhh--cceEEEE
Confidence 11 236899999963210 002334444431 1 12357788888888889999987 7777776
Q ss_pred eCCCCCHHHHHHHHHH
Q psy450 367 VGLYEDRISQLGVLKA 382 (478)
Q Consensus 367 ~~~pp~~~~r~~il~~ 382 (478)
+. .+..+...|++.
T Consensus 155 ~~--~s~~dl~~i~~~ 168 (241)
T PF04665_consen 155 FN--NSKRDLENIYRN 168 (241)
T ss_pred ec--CcHHHHHHHHHh
Confidence 65 355555444443
No 397
>PRK13948 shikimate kinase; Provisional
Probab=97.30 E-value=0.00056 Score=61.49 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=30.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEe
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVK 266 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~ 266 (478)
+..|+|.|.+|+|||++++.+|+.++.+|+..+
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 678999999999999999999999999998655
No 398
>PRK06217 hypothetical protein; Validated
Probab=97.29 E-value=0.00024 Score=64.10 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=28.0
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEe
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVK 266 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~ 266 (478)
.|+|.|+||+||||+++.+++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998876655
No 399
>PRK06696 uridine kinase; Validated
Probab=97.29 E-value=0.00063 Score=63.52 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=30.8
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPEL 270 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l 270 (478)
+.-|.+.|++|+||||+|+.|+..+ |.+++.+...++
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 6668899999999999999999998 667777665554
No 400
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.29 E-value=0.00032 Score=68.36 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=47.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC-----CcEEEEec-hhhhhh-------hhcchHHHHHHHHHHhHhCCCeEEEEc
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR-----MNFLAVKG-PELLNK-------YIGQSEENIRNVFLKARSAAPCVVFFD 300 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~-----~~~~~v~~-~~l~~~-------~~g~~~~~~~~~~~~a~~~~p~il~iD 300 (478)
..++++.||+|+||||+++++...+. ..++.+.. .++.-. ..+.....+.+++..+....|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 45799999999999999999998762 33443332 122100 011111156678888888999999999
Q ss_pred CCc
Q psy450 301 ELD 303 (478)
Q Consensus 301 eid 303 (478)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 973
No 401
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.29 E-value=0.00024 Score=61.03 Aligned_cols=28 Identities=29% Similarity=0.621 Sum_probs=26.0
Q ss_pred EEEeCCCCChHHHHHHHHHHHhCCcEEE
Q psy450 237 LLLYGPPGTGKTLIAKAVATECRMNFLA 264 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~~~~~~~ 264 (478)
|-+.|||||||||+++.+|+.+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6688999999999999999999999876
No 402
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.28 E-value=0.00035 Score=61.37 Aligned_cols=40 Identities=28% Similarity=0.493 Sum_probs=32.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhc
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIG 276 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g 276 (478)
.+|+|.|++|+||||+.+.+|+.++.+|+-.+ .++....|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D--~~Ie~~~g 42 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD--QEIEKRTG 42 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch--HHHHHHHC
Confidence 46999999999999999999999999997665 34444444
No 403
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.28 E-value=0.0036 Score=61.45 Aligned_cols=33 Identities=24% Similarity=0.497 Sum_probs=29.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEe
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVK 266 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~ 266 (478)
...|+|+|+||||||++++.+++.+|.+++.++
T Consensus 133 ~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 133 RRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 667999999999999999999999999998544
No 404
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.00083 Score=66.98 Aligned_cols=108 Identities=24% Similarity=0.390 Sum_probs=59.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh----C-CcEEEEechhhh-------h---hhhc------chHHHHHHHHHHhHhC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC----R-MNFLAVKGPELL-------N---KYIG------QSEENIRNVFLKARSA 292 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~----~-~~~~~v~~~~l~-------~---~~~g------~~~~~~~~~~~~a~~~ 292 (478)
+..++|.||+|+||||++..+|..+ | ..+..+....+. . ...| .+...+...+... .
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l--~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL--R 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh--c
Confidence 4568999999999999999998764 3 344445443321 1 0111 1111223333332 3
Q ss_pred CCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC-CCCeEEEEEcCCCCCCCccc
Q psy450 293 APCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT-SQDVFILGATNRVDLLDPAI 355 (478)
Q Consensus 293 ~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~v~vI~ttn~~~~ld~~l 355 (478)
...+|+||....... +..+...+..+..... ...++|+.+|+..+.+...+
T Consensus 215 ~~DlVLIDTaG~~~~------------d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 215 NKHMVLIDTIGMSQR------------DRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred CCCEEEEcCCCCCcc------------cHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 447999999754321 1233444444443322 23577777777776655443
No 405
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.28 E-value=0.019 Score=55.08 Aligned_cols=133 Identities=16% Similarity=0.205 Sum_probs=89.9
Q ss_pred hhcCCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCC--cEEEEe-------e-CH---hHHhccccEE
Q psy450 41 KKYNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQH--KKKLVL-------I-RK---QIQKLFLKTI 107 (478)
Q Consensus 41 ~~~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~--~v~via-------l-d~---al~rRf~~~i 107 (478)
...++.||+|||++.+.... +..+-.-.+.. ..... .|+++| + ++ .+.+|+...+
T Consensus 120 ~~~~~~vliiDe~~~l~~~~-~~~l~~l~~~~-----------~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~ 187 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPEL-LEELRMLSNFQ-----------TDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASC 187 (269)
T ss_pred hCCCCeEEEEECcccCCHHH-HHHHHHHhCcc-----------cCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeee
Confidence 45678999999999875432 11111001100 01122 344555 2 22 3556888899
Q ss_pred EeCCCCHHHHHHHHHHHHhhcCC--CCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q psy450 108 NVLPLTEPERRLLIQYQLDCLGG--DYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIY 185 (478)
Q Consensus 108 ~~~~P~~~~r~~il~~~~~~~~~--~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~ 185 (478)
+++..+.++..+++...+...+. ....+.+.++.|++.|.|.... |..+|..+...+..+ +...|+.+++..++
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~---~~~~i~~~~v~~~~ 263 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLE---EKREIGGEEVREVI 263 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHc---CCCCCCHHHHHHHH
Confidence 99999999999999988865431 1234445569999999998754 999999998888754 56789999999998
Q ss_pred HHhh
Q psy450 186 DDLQ 189 (478)
Q Consensus 186 ~~~~ 189 (478)
..++
T Consensus 264 ~~~~ 267 (269)
T TIGR03015 264 AEID 267 (269)
T ss_pred HHhh
Confidence 8764
No 406
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.27 E-value=0.00025 Score=63.97 Aligned_cols=35 Identities=20% Similarity=0.443 Sum_probs=28.2
Q ss_pred EEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhh
Q psy450 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK 273 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~ 273 (478)
|+++||||+||||+|+.+|+.++.. +++..+++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EEECChHHHH
Confidence 7899999999999999999999864 4555555443
No 407
>KOG0743|consensus
Probab=97.27 E-value=0.0013 Score=65.61 Aligned_cols=101 Identities=10% Similarity=0.025 Sum_probs=71.9
Q ss_pred CCCeEEEecccccccch-----------------hhHhhhccccccccccccchhhhccCCCcEEEEe------eCHhHH
Q psy450 44 NLDIFKYDEVNYLCNVK-----------------YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL------IRKQIQ 100 (478)
Q Consensus 44 ~p~ilfiDe~d~i~~~r-----------------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via------ld~al~ 100 (478)
+.+||+|.+||+=+..+ .++.||+.+|++-.. -.+++|+|.. |||||+
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSs---------cg~ERIivFTTNh~EkLDPALl 356 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSS---------CGDERIIVFTTNHKEKLDPALL 356 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcccccc---------CCCceEEEEecCChhhcCHhhc
Confidence 57999999999765432 256688888865321 2246788888 999999
Q ss_pred h--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCC--CCHHHHHHHH
Q psy450 101 K--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSG--FERHDLTCLV 158 (478)
Q Consensus 101 r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G--~s~~di~~l~ 158 (478)
| |.|.+|+++.=+.++-..+.+.|+..- .+..+.+.+.+.-+| .|+||+...+
T Consensus 357 RpGRmDmhI~mgyCtf~~fK~La~nYL~~~-----~~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 357 RPGRMDMHIYMGYCTFEAFKTLASNYLGIE-----EDHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred CCCcceeEEEcCCCCHHHHHHHHHHhcCCC-----CCcchhHHHHHHhhcCccCHHHHHHHH
Confidence 9 999999999999999888888888542 122222444444333 6888886643
No 408
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.27 E-value=0.0016 Score=67.13 Aligned_cols=77 Identities=29% Similarity=0.453 Sum_probs=52.0
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhh------hcch--------HHHHHHHHHHhHhC
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKY------IGQS--------EENIRNVFLKARSA 292 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~------~g~~--------~~~~~~~~~~a~~~ 292 (478)
|.+ ..-+++.|+||+|||+++..++... +.++++++..+-..+. .|.. +..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 444 4557899999999999999987755 4577888764332221 1111 11244555566667
Q ss_pred CCeEEEEcCCccccC
Q psy450 293 APCVVFFDELDSLAP 307 (478)
Q Consensus 293 ~p~il~iDeid~l~~ 307 (478)
.|.+++||.+..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999998864
No 409
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.27 E-value=0.002 Score=60.66 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=28.1
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHH---hCCcEEEEec
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATE---CRMNFLAVKG 267 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~---~~~~~~~v~~ 267 (478)
|.+ +..+|++||||+|||+++..++.+ -|.+.++++.
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 555 667899999999999999877554 2667777664
No 410
>KOG2028|consensus
Probab=97.26 E-value=0.0042 Score=60.28 Aligned_cols=140 Identities=13% Similarity=0.117 Sum_probs=92.5
Q ss_pred hhhhhHHHHhhhh-----cCCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe---------e
Q psy450 30 HHLNDIVKINLKK-----YNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL---------I 95 (478)
Q Consensus 30 ~~~~~if~~~a~~-----~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via---------l 95 (478)
.-+|+||+ .++. .+..|||||||+.+-+.. -|.+. +.-.++.|++|| +
T Consensus 204 ~dvR~ife-~aq~~~~l~krkTilFiDEiHRFNksQ--------QD~fL---------P~VE~G~I~lIGATTENPSFql 265 (554)
T KOG2028|consen 204 NDVRDIFE-QAQNEKSLTKRKTILFIDEIHRFNKSQ--------QDTFL---------PHVENGDITLIGATTENPSFQL 265 (554)
T ss_pred HHHHHHHH-HHHHHHhhhcceeEEEeHHhhhhhhhh--------hhccc---------ceeccCceEEEecccCCCccch
Confidence 46899998 8875 357999999999775433 22221 112367799999 9
Q ss_pred CHhHHhccccEEEeCCCCHHHHHHHHHHHHhhc----------CCCC-CCChhHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy450 96 RKQIQKLFLKTINVLPLTEPERRLLIQYQLDCL----------GGDY-GFDASLVEYLSSVTSGFERHDLTCLVRLSVKN 164 (478)
Q Consensus 96 d~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~----------~~~~-~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~ 164 (478)
+.|+++|- +++-+..-...+-..||.+-+..+ +++. ..+...+++++..++|=.-+-+..+--.+.+.
T Consensus 266 n~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~ 344 (554)
T KOG2028|consen 266 NAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMF 344 (554)
T ss_pred hHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 99999987 556666667777888888755422 1111 13456679999999987666655543333333
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHh
Q psy450 165 KMLKQGINKRDLQKEDFQQIYDDL 188 (478)
Q Consensus 165 a~~~~~~~~~~it~~d~~~a~~~~ 188 (478)
..+..+.....++.+|....+..-
T Consensus 345 ~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 345 CTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred HhhcCCcccceecHHHHHHHHhhc
Confidence 333333456788888888777654
No 411
>PRK14531 adenylate kinase; Provisional
Probab=97.25 E-value=0.00031 Score=63.42 Aligned_cols=34 Identities=35% Similarity=0.604 Sum_probs=28.3
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL 271 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~ 271 (478)
.++++||||+||||+++.+|+.+|.+.+. ..+++
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 49999999999999999999999877654 43444
No 412
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.25 E-value=0.00039 Score=62.97 Aligned_cols=69 Identities=22% Similarity=0.358 Sum_probs=44.7
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCC--cEEEEech-hhhhh---h----------hcchHHHHHHHHHHhHhCCCeEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRM--NFLAVKGP-ELLNK---Y----------IGQSEENIRNVFLKARSAAPCVV 297 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~--~~~~v~~~-~l~~~---~----------~g~~~~~~~~~~~~a~~~~p~il 297 (478)
...+++.||+|+||||++++++..+.. ..+.+... ++... . .+.....+.+.+..+....|.++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 456999999999999999999987632 23332211 11100 0 01122345667777778889999
Q ss_pred EEcCC
Q psy450 298 FFDEL 302 (478)
Q Consensus 298 ~iDei 302 (478)
++.|+
T Consensus 105 ~igEi 109 (186)
T cd01130 105 IVGEV 109 (186)
T ss_pred EEEcc
Confidence 99997
No 413
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.24 E-value=0.00031 Score=62.94 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=30.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPEL 270 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l 270 (478)
+-++|.|+||+||||+|+.+++.++.+++.++...+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 458999999999999999999999887776655443
No 414
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.23 E-value=0.0016 Score=56.25 Aligned_cols=69 Identities=22% Similarity=0.326 Sum_probs=40.8
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCc--EEEEech---hhhhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCcc
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMN--FLAVKGP---ELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDS 304 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~--~~~v~~~---~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~ 304 (478)
...+.+.||+|+|||+++++++...... -+.++.. .+.....+ ....+-.+..+...+|.++++||-..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~--G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSG--GEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 4457899999999999999998765311 1111110 00000111 11223345566667889999999543
No 415
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.23 E-value=0.00051 Score=68.43 Aligned_cols=70 Identities=20% Similarity=0.366 Sum_probs=46.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC----CcEEEEec-hhhhh---------hhhcchHHHHHHHHHHhHhCCCeEEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR----MNFLAVKG-PELLN---------KYIGQSEENIRNVFLKARSAAPCVVFF 299 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~----~~~~~v~~-~~l~~---------~~~g~~~~~~~~~~~~a~~~~p~il~i 299 (478)
...+++.||+|+||||+++++...+. ..++.+.. .++.. ...|.........+..+....|.+|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 34589999999999999999988664 23333321 12211 011222233566677777889999999
Q ss_pred cCCc
Q psy450 300 DELD 303 (478)
Q Consensus 300 Deid 303 (478)
||+-
T Consensus 202 gEir 205 (343)
T TIGR01420 202 GEMR 205 (343)
T ss_pred eCCC
Confidence 9973
No 416
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.23 E-value=0.0026 Score=63.32 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
....+++||||+|||++++.+++...
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Confidence 34489999999999999999998763
No 417
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.22 E-value=0.0025 Score=60.53 Aligned_cols=34 Identities=24% Similarity=0.506 Sum_probs=28.1
Q ss_pred EEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhh
Q psy450 237 LLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPEL 270 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l 270 (478)
|+|+|+||+||||+|+.+++.+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999887 456777765444
No 418
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.22 E-value=0.0016 Score=59.32 Aligned_cols=111 Identities=23% Similarity=0.373 Sum_probs=59.9
Q ss_pred hCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccC
Q psy450 229 TSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAP 307 (478)
Q Consensus 229 ~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~ 307 (478)
.+|.+ ...++|.|+-|+|||+..+.|+.+.- .+. +. . .........+ ... -++.+||++.+..
T Consensus 46 ~pg~k~d~~lvl~G~QG~GKStf~~~L~~~~~-----~d~--~~-~--~~~kd~~~~l----~~~--~iveldEl~~~~k 109 (198)
T PF05272_consen 46 EPGCKNDTVLVLVGKQGIGKSTFFRKLGPEYF-----SDS--IN-D--FDDKDFLEQL----QGK--WIVELDELDGLSK 109 (198)
T ss_pred CCCCcCceeeeEecCCcccHHHHHHHHhHHhc-----cCc--cc-c--CCCcHHHHHH----HHh--HheeHHHHhhcch
Confidence 44555 44578899999999999999966521 111 00 0 0111111121 111 3889999988762
Q ss_pred CCCCCCCCchhHHHHHHHHHHh-hcCCCC---------CCCeEEEEEcCCCCCC-CccccCCCCCCeEEEeC
Q psy450 308 RRGQEDQSSGVMDRVVSQLLAE-MDGVHT---------SQDVFILGATNRVDLL-DPAILRPGRLDKSLYVG 368 (478)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~ll~~-l~~~~~---------~~~v~vI~ttn~~~~l-d~~l~~~~Rf~~~i~~~ 368 (478)
.. ...+..++.. .+.++. .+..++|+|||..+.| |+.=-| || ..+.+.
T Consensus 110 ~~----------~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~ 168 (198)
T PF05272_consen 110 KD----------VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVS 168 (198)
T ss_pred hh----------HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEc
Confidence 11 1223333322 222221 2347789999998755 444445 66 444443
No 419
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.22 E-value=0.0021 Score=58.02 Aligned_cols=116 Identities=21% Similarity=0.264 Sum_probs=69.8
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEech----hhhhh-----------------------------
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGP----ELLNK----------------------------- 273 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~----~l~~~----------------------------- 273 (478)
|.| +.-+++.|+.|||||.+++.++.-+ +..+.+++.. ++..+
T Consensus 24 GiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~ 103 (235)
T COG2874 24 GIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNW 103 (235)
T ss_pred CCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccccccc
Confidence 455 5668889999999999999998644 4444444321 11111
Q ss_pred hhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCc
Q psy450 274 YIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDP 353 (478)
Q Consensus 274 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~ 353 (478)
......+.+..+.+..+.+...|++||-+..+.... + ...+..++..+..+.+.++++++ |-+|+.+++
T Consensus 104 ~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~------~---~~~vl~fm~~~r~l~d~gKvIil--Tvhp~~l~e 172 (235)
T COG2874 104 GRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD------S---EDAVLNFMTFLRKLSDLGKVIIL--TVHPSALDE 172 (235)
T ss_pred ChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc------c---HHHHHHHHHHHHHHHhCCCEEEE--EeChhhcCH
Confidence 012233345555666666777899999998877432 1 23445555555555445555444 455677887
Q ss_pred cccC
Q psy450 354 AILR 357 (478)
Q Consensus 354 ~l~~ 357 (478)
+...
T Consensus 173 ~~~~ 176 (235)
T COG2874 173 DVLT 176 (235)
T ss_pred HHHH
Confidence 7654
No 420
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.21 E-value=0.0017 Score=58.68 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=31.8
Q ss_pred HHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEE
Q psy450 283 RNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGA 344 (478)
Q Consensus 283 ~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~t 344 (478)
|-.+.+|....|.++++||--+.. ..+++.+.+..|..+...+-.+++.|
T Consensus 144 RVAIARALaM~P~vmLFDEPTSAL------------DPElv~EVL~vm~~LA~eGmTMivVT 193 (240)
T COG1126 144 RVAIARALAMDPKVMLFDEPTSAL------------DPELVGEVLDVMKDLAEEGMTMIIVT 193 (240)
T ss_pred HHHHHHHHcCCCCEEeecCCcccC------------CHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 345566677889999999965443 23566666666665555554555544
No 421
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.21 E-value=0.0024 Score=57.09 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=19.7
Q ss_pred CceEEEeCCCCChHHHHHHHHHH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVAT 256 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~ 256 (478)
+.-+.|.||+|+||||+.+++..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 34578999999999999999964
No 422
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.19 E-value=0.00073 Score=68.67 Aligned_cols=91 Identities=22% Similarity=0.307 Sum_probs=58.1
Q ss_pred CCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc---EEEEec-hhhh--------
Q psy450 204 VSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN---FLAVKG-PELL-------- 271 (478)
Q Consensus 204 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~---~~~v~~-~~l~-------- 271 (478)
.++++++......+.+.+.+..|. .-+|++||+|+|||+..-++.++++.+ ++.+.- -++.
T Consensus 235 l~l~~Lg~~~~~~~~~~~~~~~p~-------GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~q 307 (500)
T COG2804 235 LDLEKLGMSPFQLARLLRLLNRPQ-------GLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQ 307 (500)
T ss_pred CCHHHhCCCHHHHHHHHHHHhCCC-------eEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceee
Confidence 346677777777777777665442 236788999999999999998888543 322221 1111
Q ss_pred -hhhhcchHHHHHHHHHHhHhCCCeEEEEcCCcc
Q psy450 272 -NKYIGQSEENIRNVFLKARSAAPCVVFFDELDS 304 (478)
Q Consensus 272 -~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~ 304 (478)
+.-.|.+ ....++......|+||++.||-.
T Consensus 308 VN~k~glt---fa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 308 VNPKIGLT---FARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred cccccCCC---HHHHHHHHhccCCCeEEEeccCC
Confidence 0011222 33455666778999999999854
No 423
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.19 E-value=0.007 Score=56.93 Aligned_cols=123 Identities=10% Similarity=0.130 Sum_probs=79.6
Q ss_pred CCeEEEecccccccch-hhHhhhccccccccccccchhhhccCCC-cEEEEe---------eCHhHHhccc--cEEEeCC
Q psy450 45 LDIFKYDEVNYLCNVK-YVYFKLCSFDSVNVKSNETKDQQCKQQH-KKKLVL---------IRKQIQKLFL--KTINVLP 111 (478)
Q Consensus 45 p~ilfiDe~d~i~~~r-~~~~~l~~~d~~~~~~~~~~~~~~~~~~-~v~via---------ld~al~rRf~--~~i~~~~ 111 (478)
-.+|+|||++.+.++. ....+..-++.. .+.+. .+++.+ +.|++++|+. ..+.+..
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~-----------~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~ 166 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRI-----------LESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQP 166 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHH-----------HHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecC
Confidence 3689999999987654 122222333321 02222 344444 6899999996 7899999
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q psy450 112 LTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIY 185 (478)
Q Consensus 112 P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~ 185 (478)
|+.++|.++++...... .+..+.+.+++|+.+.+| +...+..++......+.. .+.+||..-+.+++
T Consensus 167 ~~~~~~~~~l~~~a~~~--~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l~----~~~~it~~~~k~~l 233 (235)
T PRK08084 167 LSDEEKLQALQLRARLR--GFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRASIT----AQRKLTIPFVKEIL 233 (235)
T ss_pred CCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHh----cCCCCCHHHHHHHH
Confidence 99999999999877665 355667777999998774 445666666653322221 24567766655543
No 424
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.19 E-value=0.001 Score=65.73 Aligned_cols=70 Identities=19% Similarity=0.311 Sum_probs=47.5
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCC--cEEEEe-chhhhh-h------------hhcchHHHHHHHHHHhHhCCCeEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRM--NFLAVK-GPELLN-K------------YIGQSEENIRNVFLKARSAAPCVV 297 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~--~~~~v~-~~~l~~-~------------~~g~~~~~~~~~~~~a~~~~p~il 297 (478)
..++++.|++|+||||+++++...... .++.+. ..++.- . ..+...-...+++..+...+|..|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 557999999999999999999987743 333331 112210 0 011122245678888889999999
Q ss_pred EEcCCc
Q psy450 298 FFDELD 303 (478)
Q Consensus 298 ~iDeid 303 (478)
++.|+-
T Consensus 240 ivGEiR 245 (332)
T PRK13900 240 IVGELR 245 (332)
T ss_pred EEEecC
Confidence 999974
No 425
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.18 E-value=0.00035 Score=60.74 Aligned_cols=28 Identities=29% Similarity=0.579 Sum_probs=24.6
Q ss_pred EEEeCCCCChHHHHHHHHHHHhCCcEEE
Q psy450 237 LLLYGPPGTGKTLIAKAVATECRMNFLA 264 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~~~~~~~ 264 (478)
++++|+||+||||+|+.+++.++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876543
No 426
>PTZ00202 tuzin; Provisional
Probab=97.18 E-value=0.026 Score=56.96 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=48.7
Q ss_pred CCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEech
Q psy450 204 VSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGP 268 (478)
Q Consensus 204 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~ 268 (478)
....+++|-+.....|...+...... .+.-+.|+|++|||||++++.+...++.+.+.++..
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~---~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTA---HPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCC---CceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 34568999999999998887643211 145678999999999999999999998777777754
No 427
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.17 E-value=0.00038 Score=60.08 Aligned_cols=30 Identities=30% Similarity=0.604 Sum_probs=27.7
Q ss_pred EEEeCCCCChHHHHHHHHHHHhCCcEEEEe
Q psy450 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVK 266 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~~~~~~~v~ 266 (478)
|.+.|+||||||++|+.++..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999987765
No 428
>PRK14530 adenylate kinase; Provisional
Probab=97.17 E-value=0.00042 Score=64.27 Aligned_cols=30 Identities=30% Similarity=0.541 Sum_probs=26.6
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEE
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAV 265 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v 265 (478)
.|+|.||||+||||+++.+|+.++.+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 599999999999999999999998776543
No 429
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.15 E-value=0.00035 Score=61.70 Aligned_cols=27 Identities=37% Similarity=0.635 Sum_probs=24.0
Q ss_pred EEEeCCCCChHHHHHHHHHHHhCCcEE
Q psy450 237 LLLYGPPGTGKTLIAKAVATECRMNFL 263 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~~~~~~ 263 (478)
+++.||+|+||||+++.+++.++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 478999999999999999999986654
No 430
>PRK13764 ATPase; Provisional
Probab=97.15 E-value=0.00081 Score=70.98 Aligned_cols=70 Identities=23% Similarity=0.347 Sum_probs=42.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCC---cEEEEe-chhh-----hhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCcc
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRM---NFLAVK-GPEL-----LNKYIGQSEENIRNVFLKARSAAPCVVFFDELDS 304 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~---~~~~v~-~~~l-----~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~ 304 (478)
..++|++||||+||||++++++..+.. .+..+. ..++ ..++.. ...........+....|.++++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCCC
Confidence 567999999999999999999987742 232331 1122 112110 001112233333567899999999754
No 431
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.15 E-value=0.0021 Score=55.89 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=29.2
Q ss_pred EEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhh
Q psy450 237 LLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELL 271 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~ 271 (478)
+++.|+||+|||++++.++..+ +.+.+.++...+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 6899999999999999999988 6667777765543
No 432
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.14 E-value=0.0011 Score=68.90 Aligned_cols=94 Identities=19% Similarity=0.239 Sum_probs=58.7
Q ss_pred CCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC---CcEEEEec-hhhhhhh-----
Q psy450 204 VSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR---MNFLAVKG-PELLNKY----- 274 (478)
Q Consensus 204 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~---~~~~~v~~-~~l~~~~----- 274 (478)
.++++++-.++..+.+..++..+ ..-++++||+|+||||++.++.+.+. .+++.+.. .++.-..
T Consensus 219 ~~l~~Lg~~~~~~~~l~~~~~~~-------~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~~~~~q~~ 291 (486)
T TIGR02533 219 LDLETLGMSPELLSRFERLIRRP-------HGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQ 291 (486)
T ss_pred CCHHHcCCCHHHHHHHHHHHhcC-------CCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeecCCCceEE
Confidence 45677777777777776655432 22378999999999999998877663 33444432 1111110
Q ss_pred hc-chHHHHHHHHHHhHhCCCeEEEEcCCcc
Q psy450 275 IG-QSEENIRNVFLKARSAAPCVVFFDELDS 304 (478)
Q Consensus 275 ~g-~~~~~~~~~~~~a~~~~p~il~iDeid~ 304 (478)
++ .........+..+....|.+|++.|+-.
T Consensus 292 v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 292 VNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred EccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 11 1112345566777788999999999743
No 433
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.14 E-value=0.0079 Score=62.33 Aligned_cols=130 Identities=12% Similarity=0.123 Sum_probs=83.9
Q ss_pred hhhhHHHHhhhh----cCCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEE-e------eCHhH
Q psy450 31 HLNDIVKINLKK----YNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLV-L------IRKQI 99 (478)
Q Consensus 31 ~~~~if~~~a~~----~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~vi-a------ld~al 99 (478)
.+|.+.+ .+.. ....|+||||+|.+... ..+.++..++. ..+.+++| + +++++
T Consensus 101 ~iR~i~~-~~~~~p~~~~~kVvIIDE~h~Lt~~-a~~~LLk~LE~--------------p~~~vv~Ilattn~~kl~~~L 164 (472)
T PRK14962 101 EIRKIRD-AVGYRPMEGKYKVYIIDEVHMLTKE-AFNALLKTLEE--------------PPSHVVFVLATTNLEKVPPTI 164 (472)
T ss_pred HHHHHHH-HHhhChhcCCeEEEEEEChHHhHHH-HHHHHHHHHHh--------------CCCcEEEEEEeCChHhhhHHH
Confidence 4565554 3331 13469999999998543 35667777763 22334444 3 88999
Q ss_pred HhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHH
Q psy450 100 QKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKE 179 (478)
Q Consensus 100 ~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~ 179 (478)
++|+ ..+.|..|+.++...+++..+... ....+.+.++.|+..+.| +..++.+.+..+... ....|+.+
T Consensus 165 ~SR~-~vv~f~~l~~~el~~~L~~i~~~e--gi~i~~eal~~Ia~~s~G-dlR~aln~Le~l~~~-------~~~~It~e 233 (472)
T PRK14962 165 ISRC-QVIEFRNISDELIIKRLQEVAEAE--GIEIDREALSFIAKRASG-GLRDALTMLEQVWKF-------SEGKITLE 233 (472)
T ss_pred hcCc-EEEEECCccHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHHHh-------cCCCCCHH
Confidence 9999 589999999999999999988765 334455556888887654 334444444432221 11248888
Q ss_pred HHHHHHHH
Q psy450 180 DFQQIYDD 187 (478)
Q Consensus 180 d~~~a~~~ 187 (478)
++..++..
T Consensus 234 ~V~~~l~~ 241 (472)
T PRK14962 234 TVHEALGL 241 (472)
T ss_pred HHHHHHcC
Confidence 88776653
No 434
>PRK06547 hypothetical protein; Provisional
Probab=97.13 E-value=0.00052 Score=61.17 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=28.7
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEe
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVK 266 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~ 266 (478)
+.-|++.|++|||||++++.+++.++.+++..+
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 566889999999999999999999988777654
No 435
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.13 E-value=0.00041 Score=63.06 Aligned_cols=35 Identities=34% Similarity=0.642 Sum_probs=28.3
Q ss_pred EEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhh
Q psy450 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK 273 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~ 273 (478)
|++.||||+|||++++.||+.++..++ +..+++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l~~~ 36 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDLLRE 36 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHHHHH
Confidence 899999999999999999999887654 44455433
No 436
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.13 E-value=0.011 Score=59.41 Aligned_cols=130 Identities=14% Similarity=0.197 Sum_probs=86.2
Q ss_pred hhhhhHHHHhhhh----cCCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcE-EEEe------eCHh
Q psy450 30 HHLNDIVKINLKK----YNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKK-KLVL------IRKQ 98 (478)
Q Consensus 30 ~~~~~if~~~a~~----~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v-~via------ld~a 98 (478)
..++.+.+ .+.. ....|++|||+|.+-. ...+.+|..++. ..+.+ +|++ +.+.
T Consensus 102 ~~ir~i~~-~~~~~p~~~~~kviIIDEa~~l~~-~a~naLLk~lEe--------------~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 102 EEMREILD-NIYYSPSKSRFKVYLIDEVHMLSR-HSFNALLKTLEE--------------PPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred HHHHHHHH-HHhcCcccCCceEEEEEChhhcCH-HHHHHHHHHHhc--------------CCCCeEEEEEcCChHhhhHH
Confidence 34556654 3321 1245999999998853 345677777773 22233 3333 8888
Q ss_pred HHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCH
Q psy450 99 IQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQK 178 (478)
Q Consensus 99 l~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~ 178 (478)
+.+|+ ..++|+.|+.++..++++..++..+ ...+.+.++.++..+.| +..++.+++..++.. +...++.
T Consensus 166 I~SRc-~~~~~~~l~~~el~~~L~~~~~~~g--~~i~~~al~~ia~~s~G-~~R~al~~l~~~~~~-------~~~~It~ 234 (363)
T PRK14961 166 ILSRC-LQFKLKIISEEKIFNFLKYILIKES--IDTDEYALKLIAYHAHG-SMRDALNLLEHAINL-------GKGNINI 234 (363)
T ss_pred HHhhc-eEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh-------cCCCCCH
Confidence 99898 6799999999999999999887763 33444555888888765 556666666655432 2456888
Q ss_pred HHHHHHHH
Q psy450 179 EDFQQIYD 186 (478)
Q Consensus 179 ~d~~~a~~ 186 (478)
+++..++.
T Consensus 235 ~~v~~~l~ 242 (363)
T PRK14961 235 KNVTDMLG 242 (363)
T ss_pred HHHHHHHC
Confidence 87766654
No 437
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.12 E-value=0.00047 Score=64.36 Aligned_cols=37 Identities=22% Similarity=0.522 Sum_probs=30.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN 272 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~ 272 (478)
+..+++.||||+||||+|+.+|+.++.+++.+. +++.
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g--dllr 42 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINMG--NILR 42 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEECC--hHHH
Confidence 445999999999999999999999987766544 4543
No 438
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.11 E-value=0.0093 Score=59.75 Aligned_cols=129 Identities=16% Similarity=0.240 Sum_probs=84.9
Q ss_pred hhhhHHHHhhhhcCC-----CeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe------eCHhH
Q psy450 31 HLNDIVKINLKKYNL-----DIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL------IRKQI 99 (478)
Q Consensus 31 ~~~~if~~~a~~~~p-----~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via------ld~al 99 (478)
.++.+++ .+. ..| -|++|||+|.+-. ...+.++..++.. ....++|++ +.+++
T Consensus 101 ~~~~l~~-~~~-~~p~~~~~~vviidea~~l~~-~~~~~Ll~~le~~-------------~~~~~lIl~~~~~~~l~~~l 164 (355)
T TIGR02397 101 DIREILD-NVK-YAPSSGKYKVYIIDEVHMLSK-SAFNALLKTLEEP-------------PEHVVFILATTEPHKIPATI 164 (355)
T ss_pred HHHHHHH-HHh-cCcccCCceEEEEeChhhcCH-HHHHHHHHHHhCC-------------ccceeEEEEeCCHHHHHHHH
Confidence 5677776 443 233 5999999998854 3456777777631 122233333 67889
Q ss_pred HhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHH
Q psy450 100 QKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKE 179 (478)
Q Consensus 100 ~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~ 179 (478)
++|+ ..++|+.|+.++..++++.+++..+. ..+.+.+..++..+.| +...+.+.+..+... ....++.+
T Consensus 165 ~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~--~i~~~a~~~l~~~~~g-~~~~a~~~lekl~~~-------~~~~it~~ 233 (355)
T TIGR02397 165 LSRC-QRFDFKRIPLEDIVERLKKILDKEGI--KIEDEALELIARAADG-SLRDALSLLDQLISF-------GNGNITYE 233 (355)
T ss_pred Hhhe-eEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCC-ChHHHHHHHHHHHhh-------cCCCCCHH
Confidence 9999 57899999999999999999977633 3444555788887765 445555555444332 12348888
Q ss_pred HHHHHHH
Q psy450 180 DFQQIYD 186 (478)
Q Consensus 180 d~~~a~~ 186 (478)
++..+..
T Consensus 234 ~v~~~~~ 240 (355)
T TIGR02397 234 DVNELLG 240 (355)
T ss_pred HHHHHhC
Confidence 8866554
No 439
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.11 E-value=0.0054 Score=56.71 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHH
Q psy450 235 SGLLLYGPPGTGKTLIAKAVAT 256 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~ 256 (478)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5689999999999999999983
No 440
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.11 E-value=0.003 Score=56.16 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=28.4
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEech
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVKGP 268 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~ 268 (478)
.+++.|+||+|||++|..++..++.+++++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~ 35 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATA 35 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence 489999999999999999999988777776643
No 441
>PRK10867 signal recognition particle protein; Provisional
Probab=97.11 E-value=0.039 Score=56.41 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=46.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh----CCcEEEEechhhhhh----------------h---hc-chHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC----RMNFLAVKGPELLNK----------------Y---IG-QSEENIRNVFLKA 289 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~----~~~~~~v~~~~l~~~----------------~---~g-~~~~~~~~~~~~a 289 (478)
|.-++++|++|+||||++..+|..+ |..+..+++..+... + .+ .........+..+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a 179 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEA 179 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHH
Confidence 6678999999999999888777654 566777766422211 0 01 1223334555666
Q ss_pred HhCCCeEEEEcCCccc
Q psy450 290 RSAAPCVVFFDELDSL 305 (478)
Q Consensus 290 ~~~~p~il~iDeid~l 305 (478)
+.....+|++|=.-.+
T Consensus 180 ~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 180 KENGYDVVIVDTAGRL 195 (433)
T ss_pred HhcCCCEEEEeCCCCc
Confidence 6666789999976544
No 442
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.11 E-value=0.00067 Score=66.41 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=46.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh-----CCcEEEEe-chhhhhh------hhcchHHHHHHHHHHhHhCCCeEEEEcC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC-----RMNFLAVK-GPELLNK------YIGQSEENIRNVFLKARSAAPCVVFFDE 301 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~-----~~~~~~v~-~~~l~~~------~~g~~~~~~~~~~~~a~~~~p~il~iDe 301 (478)
..++++.|++|+||||+++++.... +..++.+. ..++.-. ......-....++..+...+|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4569999999999999999998876 23344433 2222110 0011122366778888889999999999
Q ss_pred C
Q psy450 302 L 302 (478)
Q Consensus 302 i 302 (478)
+
T Consensus 224 i 224 (323)
T PRK13833 224 V 224 (323)
T ss_pred c
Confidence 6
No 443
>PF13245 AAA_19: Part of AAA domain
Probab=97.10 E-value=0.00092 Score=50.77 Aligned_cols=31 Identities=35% Similarity=0.570 Sum_probs=21.6
Q ss_pred EEEeCCCCChHH-HHHHHHHHHh------CCcEEEEec
Q psy450 237 LLLYGPPGTGKT-LIAKAVATEC------RMNFLAVKG 267 (478)
Q Consensus 237 iLl~Gp~GtGKT-~la~~la~~~------~~~~~~v~~ 267 (478)
+++.|||||||| ++++.++... +..++.+..
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 566999999999 5666666555 445665554
No 444
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.10 E-value=0.00057 Score=60.87 Aligned_cols=31 Identities=32% Similarity=0.493 Sum_probs=28.1
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEe
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVK 266 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~ 266 (478)
.++|+|++|+|||++++.+|+.+|.+++..+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 5899999999999999999999999987654
No 445
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.09 E-value=0.00055 Score=61.10 Aligned_cols=34 Identities=29% Similarity=0.605 Sum_probs=29.8
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~ 267 (478)
...|+|.|++|+|||++++.+++.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4469999999999999999999999998876653
No 446
>PRK13946 shikimate kinase; Provisional
Probab=97.09 E-value=0.00048 Score=62.24 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=30.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEe
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVK 266 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~ 266 (478)
+..|++.|.+|||||++++.+|+.+|.+++..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 567999999999999999999999999987665
No 447
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.09 E-value=0.0038 Score=58.94 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=28.4
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh----CCcEEEEec
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC----RMNFLAVKG 267 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~----~~~~~~v~~ 267 (478)
|.+ ..-+++.|+||+|||+++..++... +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 444 4468899999999999998886654 778877774
No 448
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.08 E-value=0.00052 Score=67.55 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=19.0
Q ss_pred EEEeCCCCChHHHHHHHHHHH
Q psy450 237 LLLYGPPGTGKTLIAKAVATE 257 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~ 257 (478)
+-|.||+||||||+.|+||.-
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 559999999999999999973
No 449
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.0007 Score=66.26 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.4
Q ss_pred eEEEeCCCCChHHHHHHHHHHHh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
-+.|.||+||||||+.+.||.-.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999743
No 450
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.06 E-value=0.0036 Score=67.88 Aligned_cols=115 Identities=23% Similarity=0.304 Sum_probs=63.3
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHH---HhCCcEEEEechhhhhh----------------hhcchHHHHHHHHHHhH
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVAT---ECRMNFLAVKGPELLNK----------------YIGQSEENIRNVFLKAR 290 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~---~~~~~~~~v~~~~l~~~----------------~~g~~~~~~~~~~~~a~ 290 (478)
|.+ ...++++||||||||+++..++. ..|...++++..+-... .....+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 455 55678999999999999976543 33666777765432210 01112222222222234
Q ss_pred hCCCeEEEEcCCccccCCCCCCC---C-CchhHHHHHHHHHHhhcCCCCCCCeEEEEEc
Q psy450 291 SAAPCVVFFDELDSLAPRRGQED---Q-SSGVMDRVVSQLLAEMDGVHTSQDVFILGAT 345 (478)
Q Consensus 291 ~~~p~il~iDeid~l~~~~~~~~---~-~~~~~~~~~~~ll~~l~~~~~~~~v~vI~tt 345 (478)
...+.+|+||-+..+.++..-.+ . ..+...+.+.+++..+.......++.+|.|-
T Consensus 136 ~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 136 SGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred cCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 56789999999999986321111 1 1112233444555544444445566666653
No 451
>PRK14528 adenylate kinase; Provisional
Probab=97.06 E-value=0.00059 Score=61.73 Aligned_cols=34 Identities=26% Similarity=0.566 Sum_probs=28.3
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL 271 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~ 271 (478)
.+++.||||+|||++++.+++.++.+.+. ..++.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is--~~~~l 36 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIS--TGDIL 36 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee--CCHHH
Confidence 48999999999999999999999877655 34443
No 452
>PRK10436 hypothetical protein; Provisional
Probab=97.04 E-value=0.0022 Score=66.13 Aligned_cols=93 Identities=19% Similarity=0.270 Sum_probs=59.9
Q ss_pred CCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC---CcEEEEec-hhhhhhh-----
Q psy450 204 VSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR---MNFLAVKG-PELLNKY----- 274 (478)
Q Consensus 204 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~---~~~~~v~~-~~l~~~~----- 274 (478)
.++++++-.+...+.+.+.+..+ ...+|++||+|+||||++.++...++ .+++.+.- .++.-..
T Consensus 195 ~~L~~LG~~~~~~~~l~~~~~~~-------~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l~gi~Q~~ 267 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQALQQP-------QGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQ 267 (462)
T ss_pred CCHHHcCcCHHHHHHHHHHHHhc-------CCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccCCCcceEe
Confidence 46677777777777777665433 23488999999999999888776663 33444331 1221110
Q ss_pred hc-chHHHHHHHHHHhHhCCCeEEEEcCCc
Q psy450 275 IG-QSEENIRNVFLKARSAAPCVVFFDELD 303 (478)
Q Consensus 275 ~g-~~~~~~~~~~~~a~~~~p~il~iDeid 303 (478)
++ .........+..+....|.+|++.|+-
T Consensus 268 v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 268 IHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred eCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 11 112235667777788999999999974
No 453
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.04 E-value=0.0083 Score=67.96 Aligned_cols=33 Identities=24% Similarity=0.151 Sum_probs=26.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~ 267 (478)
.+-++++||+|.|||+++...+...+ ++..++.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l 64 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL 64 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence 34589999999999999999887766 6555543
No 454
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.04 E-value=0.0009 Score=65.68 Aligned_cols=70 Identities=19% Similarity=0.339 Sum_probs=46.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh-----CCcEEEEe-chhhhh------hhhcchHHHHHHHHHHhHhCCCeEEEEcC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC-----RMNFLAVK-GPELLN------KYIGQSEENIRNVFLKARSAAPCVVFFDE 301 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~-----~~~~~~v~-~~~l~~------~~~g~~~~~~~~~~~~a~~~~p~il~iDe 301 (478)
..++++.|++|+|||+++++++... ...++.+. ..++.- .+.....-...+++..+...+|..|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 4579999999999999999999764 12333322 122210 00111122466788888889999999999
Q ss_pred Cc
Q psy450 302 LD 303 (478)
Q Consensus 302 id 303 (478)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 63
No 455
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.04 E-value=0.0047 Score=59.03 Aligned_cols=37 Identities=27% Similarity=0.283 Sum_probs=27.9
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEec
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKG 267 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~ 267 (478)
|.+ ...++++||||||||+++..++... |.++++++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 444 5568899999999999999886543 556666664
No 456
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.04 E-value=0.00086 Score=60.05 Aligned_cols=34 Identities=32% Similarity=0.653 Sum_probs=26.7
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL 271 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~ 271 (478)
.+++.||||+||||+|+.|++.++ +.+++..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhHHh
Confidence 489999999999999999999954 4555544443
No 457
>PRK09087 hypothetical protein; Validated
Probab=97.04 E-value=0.0081 Score=56.07 Aligned_cols=122 Identities=10% Similarity=0.027 Sum_probs=81.7
Q ss_pred CeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe----------eCHhHHhccc--cEEEeCCCC
Q psy450 46 DIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL----------IRKQIQKLFL--KTINVLPLT 113 (478)
Q Consensus 46 ~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via----------ld~al~rRf~--~~i~~~~P~ 113 (478)
..|+||+++.+.... ..++..++.+ ...+..+|++ ..|++++||. ..+++..|+
T Consensus 89 ~~l~iDDi~~~~~~~--~~lf~l~n~~------------~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd 154 (226)
T PRK09087 89 GPVLIEDIDAGGFDE--TGLFHLINSV------------RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPD 154 (226)
T ss_pred CeEEEECCCCCCCCH--HHHHHHHHHH------------HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCC
Confidence 578999999874332 3344445532 2334455555 4788999996 789999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHh
Q psy450 114 EPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDL 188 (478)
Q Consensus 114 ~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~ 188 (478)
.++|.+|++..+... .+..+.+.++.|+++.+| +...+..++..-...+.. .+.++|..-+.++++.+
T Consensus 155 ~e~~~~iL~~~~~~~--~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~----~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 155 DALLSQVIFKLFADR--QLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALE----RKSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhh
Confidence 999999999999876 455667777999998773 223333333333333321 35678888777777654
No 458
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.03 E-value=0.0032 Score=62.29 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=27.2
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh---------CCcEEEEec
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC---------RMNFLAVKG 267 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~---------~~~~~~v~~ 267 (478)
|.+ ..-..|+||||||||+++..++-.. +..+++++.
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdT 168 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDT 168 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEc
Confidence 555 4456799999999999999886322 246777775
No 459
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.02 E-value=0.012 Score=61.35 Aligned_cols=135 Identities=14% Similarity=0.151 Sum_probs=92.0
Q ss_pred chhhhhHHHHhhhhc----CCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe------eCHh
Q psy450 29 YHHLNDIVKINLKKY----NLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL------IRKQ 98 (478)
Q Consensus 29 ~~~~~~if~~~a~~~----~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via------ld~a 98 (478)
-..++.+.+ .+... ..-|++|||+|.+.. ...+.|+..++. .....++|++ +.++
T Consensus 110 vd~Ir~iie-~a~~~P~~~~~KVvIIDEa~~Ls~-~a~naLLk~LEe-------------pp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 110 VDDIRRIIE-SAEYKPLQGKHKIFIIDEVHMLSK-GAFNALLKTLEE-------------PPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred HHHHHHHHH-HHHhccccCCcEEEEEEChhhcCH-HHHHHHHHHHhh-------------cCCCEEEEEEeCChHHhhHH
Confidence 346677775 55321 235999999998854 346777777773 1223344444 8889
Q ss_pred HHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCH
Q psy450 99 IQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQK 178 (478)
Q Consensus 99 l~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~ 178 (478)
+.+|. ..++|..++.++...+++..++.. ....+.+.++.++..++| +..+..++++.+..... .....|+.
T Consensus 175 I~SRc-~~~ef~~ls~~el~~~L~~i~~~e--gi~ie~eAL~~Ia~~s~G-slR~al~~Ldkai~~~~----~~~~~It~ 246 (507)
T PRK06645 175 IISRC-QRYDLRRLSFEEIFKLLEYITKQE--NLKTDIEALRIIAYKSEG-SARDAVSILDQAASMSA----KSDNIISP 246 (507)
T ss_pred HHhcc-eEEEccCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhhc----cCCCCcCH
Confidence 99999 679999999999999999999776 334455555889988776 77788777777654321 11235777
Q ss_pred HHHHHHHH
Q psy450 179 EDFQQIYD 186 (478)
Q Consensus 179 ~d~~~a~~ 186 (478)
+++...+.
T Consensus 247 ~~V~~llg 254 (507)
T PRK06645 247 QVINQMLG 254 (507)
T ss_pred HHHHHHHC
Confidence 77665544
No 460
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.02 E-value=0.0086 Score=52.00 Aligned_cols=58 Identities=22% Similarity=0.215 Sum_probs=40.2
Q ss_pred eCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHHHHHHHHHhHhCCCeEEEEcC
Q psy450 240 YGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDE 301 (478)
Q Consensus 240 ~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDe 301 (478)
.+.+||||||++.+|++-++- +-.+...++.++ ...+.+..+++.+......+++.|-
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDR 62 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADR 62 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 588999999999999999984 444555555433 3444555666666444556888885
No 461
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.02 E-value=0.0025 Score=56.81 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
...+.+.||+|+|||++++.++...
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4458899999999999999999865
No 462
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.01 E-value=0.00047 Score=60.03 Aligned_cols=30 Identities=27% Similarity=0.490 Sum_probs=26.3
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEe
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVK 266 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~ 266 (478)
.+.++|.|||||||+++.++ ++|.+.++++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 37899999999999999999 8988876654
No 463
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.01 E-value=0.0012 Score=49.16 Aligned_cols=30 Identities=23% Similarity=0.458 Sum_probs=23.7
Q ss_pred EEEeCCCCChHHHHHHHHHHHh-CCcEEEEe
Q psy450 237 LLLYGPPGTGKTLIAKAVATEC-RMNFLAVK 266 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~-~~~~~~v~ 266 (478)
+.+.|+||+|||++++.+++.+ +.++..++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 6789999999999999999986 23444443
No 464
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.01 E-value=0.0053 Score=62.11 Aligned_cols=107 Identities=7% Similarity=0.033 Sum_probs=75.3
Q ss_pred hhhhhHHHHhhhh----cCCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe------eCHhH
Q psy450 30 HHLNDIVKINLKK----YNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL------IRKQI 99 (478)
Q Consensus 30 ~~~~~if~~~a~~----~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via------ld~al 99 (478)
.++|.+++ .+.. ....|+||||+|.+...- .|.+|..|+. .+.+.++|++ +.|.+
T Consensus 100 ~~iR~l~~-~~~~~p~~~~~kViiIDead~m~~~a-anaLLk~LEe-------------p~~~~~fIL~a~~~~~llpTI 164 (394)
T PRK07940 100 DEVRELVT-IAARRPSTGRWRIVVIEDADRLTERA-ANALLKAVEE-------------PPPRTVWLLCAPSPEDVLPTI 164 (394)
T ss_pred HHHHHHHH-HHHhCcccCCcEEEEEechhhcCHHH-HHHHHHHhhc-------------CCCCCeEEEEECChHHChHHH
Confidence 35788887 6543 223599999999996554 5888888874 2334555555 89999
Q ss_pred HhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHH
Q psy450 100 QKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVR 159 (478)
Q Consensus 100 ~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~ 159 (478)
++|. ..++|+.|+.++..+.|.. .. . .+.+..+.++..++|..+..+.-+..
T Consensus 165 rSRc-~~i~f~~~~~~~i~~~L~~---~~--~--~~~~~a~~la~~s~G~~~~A~~l~~~ 216 (394)
T PRK07940 165 RSRC-RHVALRTPSVEAVAEVLVR---RD--G--VDPETARRAARASQGHIGRARRLATD 216 (394)
T ss_pred HhhC-eEEECCCCCHHHHHHHHHH---hc--C--CCHHHHHHHHHHcCCCHHHHHHHhcC
Confidence 9999 7899999999997777653 21 1 12233478899999988876655443
No 465
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.00 E-value=0.00072 Score=61.06 Aligned_cols=34 Identities=21% Similarity=0.434 Sum_probs=27.4
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL 271 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~ 271 (478)
-+++.||||+||||+++.+++.+|... ++..++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~~~ 38 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGDLL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHHHH
Confidence 478999999999999999999987654 4554444
No 466
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.00 E-value=0.0037 Score=57.01 Aligned_cols=23 Identities=48% Similarity=0.686 Sum_probs=18.3
Q ss_pred eEEEeCCCCChHHHHHHHHHHHh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
-+.+.||.|||||++|-+.|-++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 48899999999999999998655
No 467
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.00 E-value=0.0015 Score=61.90 Aligned_cols=68 Identities=22% Similarity=0.418 Sum_probs=47.6
Q ss_pred EEEeCCCCChHHHHHHHHHHHhCC----cEEEEe---------chhhh-hhhhcchHHHHHHHHHHhHhCCCeEEEEcCC
Q psy450 237 LLLYGPPGTGKTLIAKAVATECRM----NFLAVK---------GPELL-NKYIGQSEENIRNVFLKARSAAPCVVFFDEL 302 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~~~----~~~~v~---------~~~l~-~~~~g~~~~~~~~~~~~a~~~~p~il~iDei 302 (478)
||++||+|+||||...++-...+. +.+.+. ...++ ..-+|.........++.|....|+||++-|+
T Consensus 128 ILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvGEm 207 (353)
T COG2805 128 ILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVGEM 207 (353)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEecc
Confidence 788899999999988888777743 333332 12222 2235666666777788888899999999886
Q ss_pred cc
Q psy450 303 DS 304 (478)
Q Consensus 303 d~ 304 (478)
-.
T Consensus 208 RD 209 (353)
T COG2805 208 RD 209 (353)
T ss_pred cc
Confidence 43
No 468
>PLN02200 adenylate kinase family protein
Probab=97.00 E-value=0.00075 Score=63.37 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=31.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK 273 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~ 273 (478)
+..+++.|+||+||||+|+.+++.+|.. +++..+++..
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~ 80 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRR 80 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHH
Confidence 5568999999999999999999999865 5666666543
No 469
>PRK02496 adk adenylate kinase; Provisional
Probab=96.99 E-value=0.00065 Score=61.32 Aligned_cols=30 Identities=30% Similarity=0.579 Sum_probs=26.1
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEE
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAV 265 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v 265 (478)
.+++.||||+|||++++.+++.++.+.+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 389999999999999999999998765543
No 470
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.99 E-value=0.0017 Score=63.70 Aligned_cols=70 Identities=20% Similarity=0.402 Sum_probs=45.8
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCC--cEEEEec-hhhhhh---h---------hcchHHHHHHHHHHhHhCCCeEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRM--NFLAVKG-PELLNK---Y---------IGQSEENIRNVFLKARSAAPCVVF 298 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~--~~~~v~~-~~l~~~---~---------~g~~~~~~~~~~~~a~~~~p~il~ 298 (478)
..++++.||+|+||||+++++...+.. ..+.+.. .++.-. . .+...-.+.+++..+....|.+|+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii 223 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRII 223 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEE
Confidence 567999999999999999999987632 2223221 111100 0 011123356677778888999999
Q ss_pred EcCCc
Q psy450 299 FDELD 303 (478)
Q Consensus 299 iDeid 303 (478)
+||+-
T Consensus 224 ~gE~r 228 (308)
T TIGR02788 224 LGELR 228 (308)
T ss_pred EeccC
Confidence 99964
No 471
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.99 E-value=0.056 Score=55.20 Aligned_cols=72 Identities=26% Similarity=0.206 Sum_probs=46.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh----CCcEEEEechhhhhh-------h------------hcch-HHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC----RMNFLAVKGPELLNK-------Y------------IGQS-EENIRNVFLKA 289 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~----~~~~~~v~~~~l~~~-------~------------~g~~-~~~~~~~~~~a 289 (478)
|.-+++.|++|+||||++..+|..+ |.++..+++..+... + .+.. .......+..+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~ 178 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYA 178 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHH
Confidence 6678999999999999988887664 556777776432210 0 0111 22334556666
Q ss_pred HhCCCeEEEEcCCccc
Q psy450 290 RSAAPCVVFFDELDSL 305 (478)
Q Consensus 290 ~~~~p~il~iDeid~l 305 (478)
......+|++|-.-.+
T Consensus 179 ~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 179 KENGFDVVIVDTAGRL 194 (428)
T ss_pred HhcCCCEEEEeCCCcc
Confidence 6666779999975443
No 472
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.99 E-value=0.011 Score=54.93 Aligned_cols=122 Identities=11% Similarity=0.164 Sum_probs=79.6
Q ss_pred CCCeEEEecccccccch-hhHhhhccccccccccccchhhhccCCCcEEEEe------e---CHhHHhccc--cEEEeCC
Q psy450 44 NLDIFKYDEVNYLCNVK-YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL------I---RKQIQKLFL--KTINVLP 111 (478)
Q Consensus 44 ~p~ilfiDe~d~i~~~r-~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via------l---d~al~rRf~--~~i~~~~ 111 (478)
.+.+|+|||+|.+.... ....+...++... ..+..+++.+ + ++.+.+||. ..+.++.
T Consensus 90 ~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~-----------~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~ 158 (226)
T TIGR03420 90 QADLVCLDDVEAIAGQPEWQEALFHLYNRVR-----------EAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPP 158 (226)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHH-----------HcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCC
Confidence 35699999999987543 1333443344211 1223344433 2 277887874 7899999
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHH
Q psy450 112 LTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQ 183 (478)
Q Consensus 112 P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~ 183 (478)
|+.+++..+++.+.... ....+.+.++.|+.. -+-+..++..+++.+...+.. .+..|+.+...+
T Consensus 159 l~~~e~~~~l~~~~~~~--~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~----~~~~i~~~~~~~ 223 (226)
T TIGR03420 159 LSDEEKIAALQSRAARR--GLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLA----AKRKITIPFVKE 223 (226)
T ss_pred CCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH----hCCCCCHHHHHH
Confidence 99999999999988765 344556666888885 667888899988886654432 234576655443
No 473
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.99 E-value=0.0073 Score=53.80 Aligned_cols=32 Identities=34% Similarity=0.368 Sum_probs=26.5
Q ss_pred EEEeCCCCChHHHHHHHHHHHh---CCcEEEEech
Q psy450 237 LLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGP 268 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~ 268 (478)
+++.|+||+|||+++..++..+ +..+..+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 6889999999999999998776 5667777654
No 474
>PRK06620 hypothetical protein; Validated
Probab=96.98 E-value=0.015 Score=53.82 Aligned_cols=117 Identities=10% Similarity=0.160 Sum_probs=74.8
Q ss_pred CCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe---------eCHhHHhccc--cEEEeCCC
Q psy450 44 NLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL---------IRKQIQKLFL--KTINVLPL 112 (478)
Q Consensus 44 ~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via---------ld~al~rRf~--~~i~~~~P 112 (478)
+.++|+|||+|.+-. . .++..++.+ ...+..+|++ + |++++|+. ..+.+..|
T Consensus 85 ~~d~lliDdi~~~~~-~---~lf~l~N~~------------~e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~p 147 (214)
T PRK06620 85 KYNAFIIEDIENWQE-P---ALLHIFNII------------NEKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSP 147 (214)
T ss_pred cCCEEEEeccccchH-H---HHHHHHHHH------------HhcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCC
Confidence 457999999995421 1 223333322 1233455555 6 88999995 26999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q psy450 113 TEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQI 184 (478)
Q Consensus 113 ~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a 184 (478)
|.+.+.++++...... .+..+.+.++.|+...+| +...+..++......+.. ...+||...+.++
T Consensus 148 d~~~~~~~l~k~~~~~--~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~----~~~~it~~~~~~~ 212 (214)
T PRK06620 148 DDELIKILIFKHFSIS--SVTISRQIIDFLLVNLPR-EYSKIIEILENINYFALI----SKRKITISLVKEV 212 (214)
T ss_pred CHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH----cCCCCCHHHHHHH
Confidence 9999999999998765 455666677999998763 445565555553222221 2356776665544
No 475
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.97 E-value=0.0027 Score=62.64 Aligned_cols=39 Identities=26% Similarity=0.367 Sum_probs=29.2
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh---------CCcEEEEechh
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC---------RMNFLAVKGPE 269 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~---------~~~~~~v~~~~ 269 (478)
|.+ +.-++++||||||||+++..++... +..+++++..+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 444 5557899999999999999998653 33677777543
No 476
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.0024 Score=55.92 Aligned_cols=71 Identities=25% Similarity=0.393 Sum_probs=42.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCc--EEEEechhhh-------hhhhc----ch-HHHHHHHHHHhHhCCCeEEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMN--FLAVKGPELL-------NKYIG----QS-EENIRNVFLKARSAAPCVVFF 299 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~--~~~v~~~~l~-------~~~~g----~~-~~~~~~~~~~a~~~~p~il~i 299 (478)
...+.|.||+|+|||+++++++..+... -+.++...+. ....+ .+ ....+-.+..+....|.++++
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3468899999999999999999866321 1233322111 01011 11 122233355555667889999
Q ss_pred cCCcc
Q psy450 300 DELDS 304 (478)
Q Consensus 300 Deid~ 304 (478)
||...
T Consensus 105 DEp~~ 109 (157)
T cd00267 105 DEPTS 109 (157)
T ss_pred eCCCc
Confidence 99654
No 477
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.97 E-value=0.0054 Score=56.25 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHH
Q psy450 235 SGLLLYGPPGTGKTLIAKAVAT 256 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~ 256 (478)
.-++|+||.|+|||++++.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 3589999999999999999983
No 478
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.96 E-value=0.0022 Score=57.22 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=21.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
...+.|.||+|+|||++++.++...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3458899999999999999999865
No 479
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.96 E-value=0.032 Score=56.01 Aligned_cols=34 Identities=24% Similarity=0.503 Sum_probs=25.9
Q ss_pred eEEEeCCCCChHHHHH--HHHHHHhCCcEEEEechhhh
Q psy450 236 GLLLYGPPGTGKTLIA--KAVATECRMNFLAVKGPELL 271 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la--~~la~~~~~~~~~v~~~~l~ 271 (478)
-|+++||.|+||+.++ +++.. ..++++++|..+.
T Consensus 19 FIvV~GPrGSGK~elV~d~~L~~--r~~vL~IDC~~i~ 54 (431)
T PF10443_consen 19 FIVVQGPRGSGKRELVMDHVLKD--RKNVLVIDCDQIV 54 (431)
T ss_pred EEEEECCCCCCccHHHHHHHHhC--CCCEEEEEChHhh
Confidence 3788999999999999 55544 3457888886664
No 480
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.95 E-value=0.016 Score=59.35 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=27.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh-----CCcEEEEechh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC-----RMNFLAVKGPE 269 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~-----~~~~~~v~~~~ 269 (478)
+..++|.||+|+||||++..+|..+ +..+..++...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4568899999999999988887654 34666676654
No 481
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.94 E-value=0.021 Score=53.30 Aligned_cols=124 Identities=13% Similarity=0.194 Sum_probs=81.8
Q ss_pred CCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe---------eCHhHHhcc--ccEEEeCCC
Q psy450 44 NLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL---------IRKQIQKLF--LKTINVLPL 112 (478)
Q Consensus 44 ~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via---------ld~al~rRf--~~~i~~~~P 112 (478)
...+|+|||+|.+.... ...++..++... .....+++++ +.+.+.+|| ...++++.|
T Consensus 90 ~~~~liiDdi~~l~~~~-~~~L~~~~~~~~-----------~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl 157 (227)
T PRK08903 90 EAELYAVDDVERLDDAQ-QIALFNLFNRVR-----------AHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPL 157 (227)
T ss_pred cCCEEEEeChhhcCchH-HHHHHHHHHHHH-----------HcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCC
Confidence 46899999999875433 333444444211 1222345554 456777787 469999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q psy450 113 TEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYD 186 (478)
Q Consensus 113 ~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~ 186 (478)
+.+++..+++.+.... .+..+.+.++.|+.. -+-+..++..+++.-...+.. .+.+||.....+++.
T Consensus 158 ~~~~~~~~l~~~~~~~--~v~l~~~al~~L~~~-~~gn~~~l~~~l~~l~~~~~~----~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 158 SDADKIAALKAAAAER--GLQLADEVPDYLLTH-FRRDMPSLMALLDALDRYSLE----QKRPVTLPLLREMLA 224 (227)
T ss_pred CHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH----hCCCCCHHHHHHHHh
Confidence 9999999999888766 455666677889984 445677777777764443322 346788777666654
No 482
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.94 E-value=0.0026 Score=67.59 Aligned_cols=94 Identities=17% Similarity=0.249 Sum_probs=58.7
Q ss_pred CCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC---CcEEEEech-hhhhh-----h
Q psy450 204 VSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR---MNFLAVKGP-ELLNK-----Y 274 (478)
Q Consensus 204 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~---~~~~~v~~~-~l~~~-----~ 274 (478)
.++++++-.+...+.+.+.+..+ ...+|++||+|+||||+..++.+.++ .+++.+.-+ ++.-. .
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~~-------~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~~~~~q~~ 365 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHKP-------QGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVN 365 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHhc-------CCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecCCCceEEE
Confidence 34567776766666666655433 23478999999999999988877764 234433221 11100 0
Q ss_pred hc-chHHHHHHHHHHhHhCCCeEEEEcCCcc
Q psy450 275 IG-QSEENIRNVFLKARSAAPCVVFFDELDS 304 (478)
Q Consensus 275 ~g-~~~~~~~~~~~~a~~~~p~il~iDeid~ 304 (478)
++ .........++.+....|.+|++.|+-.
T Consensus 366 v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 366 VNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred eccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 11 1112356677778889999999999743
No 483
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.94 E-value=0.00077 Score=62.29 Aligned_cols=34 Identities=38% Similarity=0.680 Sum_probs=27.9
Q ss_pred EEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh
Q psy450 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN 272 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~ 272 (478)
|++.||||+||||+|+.+|+.+|.+.+. ..+++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHHH
Confidence 7899999999999999999999876654 444443
No 484
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.93 E-value=0.0046 Score=59.46 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=26.7
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh----CCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC----RMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~----~~~~~~v~~ 267 (478)
...+++.|+||+|||+++..++..+ +.++++++.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 4458899999999999999887654 667777665
No 485
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.93 E-value=0.0061 Score=54.65 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=22.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
+..+.+.||+|+|||++++.++...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4458899999999999999998865
No 486
>PRK05973 replicative DNA helicase; Provisional
Probab=96.93 E-value=0.0057 Score=57.22 Aligned_cols=34 Identities=29% Similarity=0.277 Sum_probs=26.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~ 267 (478)
...+++.|+||+|||+++-.++... |.++++++.
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 4468899999999999998886644 777777764
No 487
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.92 E-value=0.007 Score=56.60 Aligned_cols=37 Identities=27% Similarity=0.315 Sum_probs=27.2
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEec
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKG 267 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~ 267 (478)
|.+ ...+++.||||+|||+++..++... +.+.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 444 5668999999999999998876432 556666664
No 488
>PRK04040 adenylate kinase; Provisional
Probab=96.92 E-value=0.00096 Score=60.41 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=25.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh--CCcEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC--RMNFL 263 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~--~~~~~ 263 (478)
+..++++|+|||||||+++.+++.+ +.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 4468999999999999999999999 55543
No 489
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.92 E-value=0.0034 Score=61.71 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=29.3
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh---------CCcEEEEechh
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC---------RMNFLAVKGPE 269 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~---------~~~~~~v~~~~ 269 (478)
|.+ ..-++++||||+|||+++-.++... +..+++++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 444 4557899999999999999998653 23677887544
No 490
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.92 E-value=0.0046 Score=55.84 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=18.1
Q ss_pred EEEeCCCCChHHHHHHHHH
Q psy450 237 LLLYGPPGTGKTLIAKAVA 255 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la 255 (478)
++|+||.|+|||++++.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 491
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.92 E-value=0.0017 Score=56.62 Aligned_cols=35 Identities=34% Similarity=0.591 Sum_probs=28.7
Q ss_pred EeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhh
Q psy450 239 LYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYI 275 (478)
Q Consensus 239 l~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~ 275 (478)
+.||||+|||++|+.||+.++. .+++..+++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHHH
Confidence 5899999999999999999975 5667777765544
No 492
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.91 E-value=0.022 Score=54.76 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=27.7
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEech
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGP 268 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~ 268 (478)
++-+.|+||+|+||||++..+|..+ +..+..+++.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5678899999999999999998766 5566666553
No 493
>PRK05642 DNA replication initiation factor; Validated
Probab=96.91 E-value=0.013 Score=55.05 Aligned_cols=121 Identities=7% Similarity=0.121 Sum_probs=80.6
Q ss_pred CCeEEEecccccccch-hhHhhhccccccccccccchhhhccCCCcEEEEe----------eCHhHHhccc--cEEEeCC
Q psy450 45 LDIFKYDEVNYLCNVK-YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL----------IRKQIQKLFL--KTINVLP 111 (478)
Q Consensus 45 p~ilfiDe~d~i~~~r-~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via----------ld~al~rRf~--~~i~~~~ 111 (478)
..+|+||+++.+.++. ....++.-++.. ...+..+|++ ..|.+++||. ..+.+..
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~------------~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~ 165 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRL------------RDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRG 165 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHH------------HhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCC
Confidence 4689999999987754 234455555532 2334556666 5899999995 6778899
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q psy450 112 LTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQI 184 (478)
Q Consensus 112 P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a 184 (478)
|+.++|.++++...... .+..+.+.+++|+...+ -+.+.+..++..-...+.. .+.+||..-+.++
T Consensus 166 ~~~e~~~~il~~ka~~~--~~~l~~ev~~~L~~~~~-~d~r~l~~~l~~l~~~~l~----~~~~it~~~~~~~ 231 (234)
T PRK05642 166 LSDEDKLRALQLRASRR--GLHLTDEVGHFILTRGT-RSMSALFDLLERLDQASLQ----AQRKLTIPFLKET 231 (234)
T ss_pred CCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH----cCCcCCHHHHHHH
Confidence 99999999999777555 34556667789998876 4556666655544433321 2456776544444
No 494
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.91 E-value=0.011 Score=56.78 Aligned_cols=132 Identities=14% Similarity=0.121 Sum_probs=86.1
Q ss_pred HHHHhhhhcCCCeEEEecccccccchh--hHhhhccccccccccccchhhhccCCCcEEEEe---------eCHhHHhcc
Q psy450 35 IVKINLKKYNLDIFKYDEVNYLCNVKY--VYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL---------IRKQIQKLF 103 (478)
Q Consensus 35 if~~~a~~~~p~ilfiDe~d~i~~~r~--~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via---------ld~al~rRf 103 (478)
+.. ..+..++-+|+|||++.++.... .-.+++.+=.+ +..-+-.++.+| -|+-+.+||
T Consensus 137 ~~~-llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L----------~NeL~ipiV~vGt~~A~~al~~D~QLa~RF 205 (302)
T PF05621_consen 137 VLR-LLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFL----------GNELQIPIVGVGTREAYRALRTDPQLASRF 205 (302)
T ss_pred HHH-HHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHH----------hhccCCCeEEeccHHHHHHhccCHHHHhcc
Confidence 344 56788899999999999754331 11112111111 112234566777 799999999
Q ss_pred ccEEEeCCCC-HHHHHHHHHHHHhhcCCCCC---CChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHH
Q psy450 104 LKTINVLPLT-EPERRLLIQYQLDCLGGDYG---FDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKE 179 (478)
Q Consensus 104 ~~~i~~~~P~-~~~r~~il~~~~~~~~~~~~---~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~ 179 (478)
+ .+.+|... .++-..++..+-..++.... .+.++...|-..|+|..| ++..++..|+..|+.. +...|+.+
T Consensus 206 ~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~s---G~E~It~~ 280 (302)
T PF05621_consen 206 E-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRS---GEERITRE 280 (302)
T ss_pred C-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhc---CCceecHH
Confidence 4 56667664 44556677777766642222 234555778888999885 6889999999999865 67778877
Q ss_pred HHH
Q psy450 180 DFQ 182 (478)
Q Consensus 180 d~~ 182 (478)
.+.
T Consensus 281 ~l~ 283 (302)
T PF05621_consen 281 ILD 283 (302)
T ss_pred HHh
Confidence 664
No 495
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.0055 Score=54.94 Aligned_cols=23 Identities=52% Similarity=0.806 Sum_probs=21.5
Q ss_pred EEEeCCCCChHHHHHHHHHHHhC
Q psy450 237 LLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
++|+|+||+|||++|+-+|+++.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 78999999999999999999883
No 496
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.0016 Score=61.00 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.0
Q ss_pred eEEEeCCCCChHHHHHHHHHHHh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
-+-+.||.|+|||||.+++..-+
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999998743
No 497
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.89 E-value=0.0034 Score=61.41 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=27.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL 271 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~ 271 (478)
.-+++.|+|||||||+|+.+++.+. .+..++...+.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r 38 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLR 38 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHH
Confidence 3478899999999999999999983 33445544443
No 498
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.89 E-value=0.003 Score=57.78 Aligned_cols=40 Identities=20% Similarity=0.405 Sum_probs=30.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh-CCcEEEEechhhhhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC-RMNFLAVKGPELLNK 273 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~-~~~~~~v~~~~l~~~ 273 (478)
|.-+++.|+||+|||+++..+...+ +..++.++..++...
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 7789999999999999999999988 778888888766433
No 499
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.88 E-value=0.011 Score=54.10 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=19.0
Q ss_pred eEEEeCCCCChHHHHHHHHH
Q psy450 236 GLLLYGPPGTGKTLIAKAVA 255 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la 255 (478)
.++|+||.|+|||++.+.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 59999999999999999998
No 500
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.87 E-value=0.00097 Score=61.84 Aligned_cols=29 Identities=38% Similarity=0.679 Sum_probs=25.9
Q ss_pred EEEeCCCCChHHHHHHHHHHHhCCcEEEE
Q psy450 237 LLLYGPPGTGKTLIAKAVATECRMNFLAV 265 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~~~~~~~v 265 (478)
|+++||||+|||++++.+|+.++...+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999998766553
Done!