Query psy450
Match_columns 478
No_of_seqs 419 out of 3849
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 18:47:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 2.9E-72 1E-76 602.0 21.2 427 18-470 273-755 (806)
2 4b4t_J 26S protease regulatory 100.0 1.8E-48 6.1E-53 386.0 26.4 250 198-465 139-396 (405)
3 1ypw_A Transitional endoplasmi 100.0 2.3E-50 7.8E-55 440.3 8.5 418 28-470 282-755 (806)
4 4b4t_I 26S protease regulatory 100.0 1.6E-47 5.4E-52 379.7 25.2 251 199-467 174-432 (437)
5 4b4t_M 26S protease regulatory 100.0 1.1E-46 3.8E-51 379.0 26.1 248 199-464 173-428 (434)
6 4b4t_L 26S protease subunit RP 100.0 5.6E-46 1.9E-50 374.2 25.9 247 200-464 174-428 (437)
7 4b4t_H 26S protease regulatory 100.0 6.3E-46 2.2E-50 371.8 25.9 246 200-463 202-455 (467)
8 4b4t_K 26S protease regulatory 100.0 7.1E-46 2.4E-50 372.9 26.2 254 199-469 164-426 (428)
9 3cf2_A TER ATPase, transitiona 100.0 1.3E-39 4.4E-44 349.5 23.3 253 199-461 196-462 (806)
10 2x8a_A Nuclear valosin-contain 100.0 3.8E-38 1.3E-42 302.4 22.0 259 200-467 3-273 (274)
11 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.5E-37 8.5E-42 304.0 24.5 258 200-469 5-310 (322)
12 3cf0_A Transitional endoplasmi 100.0 5.3E-37 1.8E-41 299.2 24.1 263 199-469 7-292 (301)
13 3eie_A Vacuolar protein sortin 100.0 3.9E-36 1.3E-40 296.0 23.6 258 199-468 10-308 (322)
14 2qp9_X Vacuolar protein sortin 100.0 2E-35 6.9E-40 294.3 21.9 260 198-469 42-342 (355)
15 2zan_A Vacuolar protein sortin 100.0 4.4E-35 1.5E-39 300.1 22.5 260 198-469 125-432 (444)
16 2ce7_A Cell division protein F 100.0 7.5E-34 2.6E-38 290.3 24.6 243 201-461 10-259 (476)
17 1lv7_A FTSH; alpha/beta domain 100.0 1.5E-32 5.2E-37 261.7 25.9 242 200-459 5-253 (257)
18 3hu3_A Transitional endoplasmi 100.0 7.5E-33 2.6E-37 285.3 24.8 250 202-461 199-462 (489)
19 3h4m_A Proteasome-activating n 100.0 3.1E-32 1.1E-36 263.4 23.7 244 199-460 9-260 (285)
20 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.5E-32 5.1E-37 262.2 18.4 247 202-466 1-257 (262)
21 2dhr_A FTSH; AAA+ protein, hex 100.0 5.2E-32 1.8E-36 278.3 20.6 243 202-462 26-275 (499)
22 3d8b_A Fidgetin-like protein 1 100.0 1.2E-31 4.1E-36 267.5 21.7 258 200-469 77-345 (357)
23 1ixz_A ATP-dependent metallopr 100.0 1.1E-30 3.8E-35 248.3 26.7 238 199-448 8-252 (254)
24 3b9p_A CG5977-PA, isoform A; A 100.0 1.3E-31 4.5E-36 260.6 20.3 258 199-468 13-282 (297)
25 3vfd_A Spastin; ATPase, microt 100.0 2.3E-30 7.8E-35 261.4 20.7 257 199-467 107-374 (389)
26 1iy2_A ATP-dependent metallopr 100.0 3.3E-29 1.1E-33 241.4 27.5 237 200-448 33-276 (278)
27 2r62_A Cell division protease 100.0 5.3E-32 1.8E-36 259.5 4.1 248 199-464 3-259 (268)
28 1r6b_X CLPA protein; AAA+, N-t 100.0 6E-27 2E-31 256.1 28.2 365 28-429 263-722 (758)
29 3pxi_A Negative regulator of g 99.9 3.1E-26 1.1E-30 250.2 27.7 360 28-430 252-732 (758)
30 4b4t_J 26S protease regulatory 99.9 1.6E-27 5.6E-32 236.0 13.2 155 19-193 218-394 (405)
31 1ypw_A Transitional endoplasmi 99.9 1.8E-26 6E-31 252.0 22.2 245 200-448 197-455 (806)
32 4b4t_I 26S protease regulatory 99.9 4.9E-27 1.7E-31 233.1 10.9 155 19-193 252-428 (437)
33 3t15_A Ribulose bisphosphate c 99.9 3.4E-26 1.2E-30 221.6 14.2 171 234-412 36-221 (293)
34 4b4t_M 26S protease regulatory 99.9 1.4E-26 4.8E-31 232.9 10.3 157 19-195 251-429 (434)
35 4b4t_H 26S protease regulatory 99.9 5.4E-26 1.9E-30 227.7 12.8 155 19-193 279-455 (467)
36 4b4t_L 26S protease subunit RP 99.9 4.7E-26 1.6E-30 229.2 10.8 154 19-192 251-426 (437)
37 1qvr_A CLPB protein; coiled co 99.9 2.1E-24 7.3E-29 238.2 18.9 372 29-430 248-827 (854)
38 4b4t_K 26S protease regulatory 99.9 6.2E-25 2.1E-29 220.8 11.7 151 19-189 242-415 (428)
39 2c9o_A RUVB-like 1; hexameric 99.9 7.1E-25 2.4E-29 225.5 -2.5 206 200-417 30-262 (456)
40 3syl_A Protein CBBX; photosynt 99.9 1E-21 3.4E-26 191.8 14.0 230 207-448 31-290 (309)
41 3m6a_A ATP-dependent protease 99.8 4.1E-20 1.4E-24 193.5 13.5 229 202-448 76-337 (543)
42 3uk6_A RUVB-like 2; hexameric 99.8 3.9E-19 1.3E-23 177.7 18.6 217 201-448 38-326 (368)
43 1ofh_A ATP-dependent HSL prote 99.8 6.1E-19 2.1E-23 171.8 18.7 233 207-448 15-295 (310)
44 3hu3_A Transitional endoplasmi 99.8 6E-20 2.1E-24 189.1 11.5 179 19-215 274-485 (489)
45 3pfi_A Holliday junction ATP-d 99.8 2.3E-18 7.9E-23 170.1 22.0 212 200-448 22-250 (338)
46 1xwi_A SKD1 protein; VPS4B, AA 99.8 2.7E-19 9.2E-24 175.4 14.0 156 21-191 84-302 (322)
47 3hws_A ATP-dependent CLP prote 99.8 1.1E-18 3.8E-23 174.2 16.8 235 208-448 16-345 (363)
48 1d2n_A N-ethylmaleimide-sensit 99.8 2.6E-18 9E-23 164.5 18.0 205 205-419 31-246 (272)
49 3eie_A Vacuolar protein sortin 99.8 1.2E-18 4.1E-23 171.0 15.6 160 18-192 86-302 (322)
50 2x8a_A Nuclear valosin-contain 99.8 8E-19 2.7E-23 167.9 12.5 151 29-193 89-269 (274)
51 2qp9_X Vacuolar protein sortin 99.8 3E-18 1E-22 170.3 15.9 159 19-192 120-335 (355)
52 1g41_A Heat shock protein HSLU 99.8 2.7E-19 9.1E-24 180.3 6.6 162 207-380 15-188 (444)
53 3cf0_A Transitional endoplasmi 99.8 3.9E-18 1.3E-22 165.7 14.4 156 19-191 85-284 (301)
54 1hqc_A RUVB; extended AAA-ATPa 99.8 2.2E-17 7.7E-22 161.9 19.1 212 201-448 6-234 (324)
55 2zan_A Vacuolar protein sortin 99.7 5.2E-18 1.8E-22 173.5 13.7 134 20-168 205-355 (444)
56 2z4s_A Chromosomal replication 99.7 2.7E-17 9.1E-22 167.9 18.1 217 199-448 97-328 (440)
57 2v1u_A Cell division control p 99.7 1.3E-17 4.3E-22 167.4 14.9 219 205-448 17-272 (387)
58 2ce7_A Cell division protein F 99.7 2.4E-17 8.4E-22 168.3 14.2 145 28-191 93-259 (476)
59 1l8q_A Chromosomal replication 99.7 9.4E-17 3.2E-21 157.6 17.8 198 201-421 5-214 (324)
60 1um8_A ATP-dependent CLP prote 99.7 3.5E-17 1.2E-21 164.1 15.0 233 208-448 22-361 (376)
61 1g8p_A Magnesium-chelatase 38 99.7 9.6E-17 3.3E-21 159.1 17.1 216 200-449 17-319 (350)
62 3te6_A Regulatory protein SIR3 99.7 2E-17 7E-22 160.1 10.7 160 209-387 22-214 (318)
63 3pvs_A Replication-associated 99.7 4.8E-17 1.7E-21 165.8 13.9 203 202-448 21-240 (447)
64 4fcw_A Chaperone protein CLPB; 99.7 4.4E-17 1.5E-21 158.9 12.9 207 207-429 17-285 (311)
65 2chg_A Replication factor C sm 99.7 8.6E-16 2.9E-20 141.4 19.3 200 201-448 11-222 (226)
66 2qby_B CDC6 homolog 3, cell di 99.7 2.8E-16 9.4E-21 157.8 15.2 207 207-448 20-266 (384)
67 1jbk_A CLPB protein; beta barr 99.7 1.2E-16 4.2E-21 143.6 10.4 159 203-380 18-194 (195)
68 3u61_B DNA polymerase accessor 99.7 7.8E-16 2.7E-20 151.0 16.3 153 201-383 20-177 (324)
69 1njg_A DNA polymerase III subu 99.7 6.8E-15 2.3E-19 137.1 21.8 202 201-448 17-247 (250)
70 3bos_A Putative DNA replicatio 99.7 7.8E-16 2.7E-20 143.8 15.1 205 201-448 22-239 (242)
71 1lv7_A FTSH; alpha/beta domain 99.7 4.9E-16 1.7E-20 147.3 13.6 143 28-189 89-253 (257)
72 3d8b_A Fidgetin-like protein 1 99.7 1.6E-15 5.3E-20 150.9 16.1 153 28-193 161-339 (357)
73 2dhr_A FTSH; AAA+ protein, hex 99.6 2.8E-16 9.6E-21 161.4 10.8 145 28-191 108-274 (499)
74 2qby_A CDC6 homolog 1, cell di 99.6 7.8E-16 2.7E-20 154.2 13.8 219 203-448 16-268 (386)
75 2r44_A Uncharacterized protein 99.6 1.3E-15 4.3E-20 150.0 14.5 155 206-386 26-200 (331)
76 1in4_A RUVB, holliday junction 99.6 1.8E-14 6.3E-19 141.8 22.8 211 201-448 19-246 (334)
77 1fnn_A CDC6P, cell division co 99.6 3.4E-15 1.2E-19 149.9 17.7 217 204-448 14-270 (389)
78 3h4m_A Proteasome-activating n 99.6 1.8E-15 6.3E-20 145.5 15.1 147 29-194 96-264 (285)
79 1sxj_A Activator 1 95 kDa subu 99.6 1E-15 3.5E-20 159.6 13.9 196 200-418 32-252 (516)
80 1r6b_X CLPA protein; AAA+, N-t 99.6 1.6E-15 5.5E-20 165.7 15.5 223 203-450 182-431 (758)
81 1ixz_A ATP-dependent metallopr 99.6 1.4E-15 4.7E-20 143.9 12.8 138 29-185 94-253 (254)
82 1qvr_A CLPB protein; coiled co 99.6 1.8E-15 6E-20 167.1 14.8 201 203-423 166-393 (854)
83 2qz4_A Paraplegin; AAA+, SPG7, 99.6 8.4E-16 2.9E-20 145.9 10.6 150 26-193 81-254 (262)
84 3pxg_A Negative regulator of g 99.6 2.9E-15 9.9E-20 154.1 14.6 186 203-422 176-385 (468)
85 2p65_A Hypothetical protein PF 99.6 1.3E-15 4.5E-20 136.3 10.4 151 203-370 18-186 (187)
86 3pxi_A Negative regulator of g 99.6 3.7E-15 1.3E-19 162.7 15.0 188 202-423 175-386 (758)
87 3b9p_A CG5977-PA, isoform A; A 99.6 6E-15 2.1E-19 142.8 14.1 152 28-191 98-275 (297)
88 1sxj_D Activator 1 41 kDa subu 99.6 8.4E-15 2.9E-19 145.1 15.4 206 201-448 31-259 (353)
89 1iy2_A ATP-dependent metallopr 99.6 8.7E-15 3E-19 140.4 13.7 138 29-185 118-277 (278)
90 1iqp_A RFCS; clamp loader, ext 99.6 4.4E-14 1.5E-18 138.3 18.6 189 201-418 19-215 (327)
91 3vfd_A Spastin; ATPase, microt 99.6 9.8E-15 3.3E-19 146.9 14.1 156 22-191 187-368 (389)
92 2chq_A Replication factor C sm 99.6 1.6E-14 5.5E-19 140.9 14.8 177 199-402 9-193 (319)
93 2r62_A Cell division protease 99.6 3.4E-16 1.1E-20 149.3 2.8 147 29-193 89-258 (268)
94 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 8.4E-15 2.9E-19 150.6 12.6 204 208-446 23-280 (500)
95 1jr3_A DNA polymerase III subu 99.6 6.7E-14 2.3E-18 139.7 18.5 202 201-448 10-240 (373)
96 1sxj_B Activator 1 37 kDa subu 99.6 5.2E-14 1.8E-18 137.5 15.5 185 201-418 15-212 (323)
97 2bjv_A PSP operon transcriptio 99.5 1.1E-13 3.9E-18 131.6 15.8 193 204-420 3-238 (265)
98 2c9o_A RUVB-like 1; hexameric 99.5 8.5E-16 2.9E-20 157.8 0.4 276 21-449 103-434 (456)
99 1sxj_E Activator 1 40 kDa subu 99.5 3.2E-13 1.1E-17 133.9 15.5 191 199-419 6-241 (354)
100 3f9v_A Minichromosome maintena 99.5 1.3E-14 4.5E-19 153.1 4.0 213 207-448 295-583 (595)
101 1ojl_A Transcriptional regulat 99.5 1E-13 3.5E-18 134.5 9.5 190 207-420 2-233 (304)
102 1sxj_C Activator 1 40 kDa subu 99.4 8.2E-13 2.8E-17 130.3 14.8 157 201-388 19-186 (340)
103 3co5_A Putative two-component 99.4 5.8E-14 2E-18 120.6 4.8 112 208-348 5-116 (143)
104 3n70_A Transport activator; si 99.4 2.9E-13 9.8E-18 116.5 9.0 112 208-348 2-116 (145)
105 1w5s_A Origin recognition comp 99.4 4.3E-12 1.5E-16 128.2 16.7 223 204-448 19-289 (412)
106 3kw6_A 26S protease regulatory 99.4 1.5E-12 5.2E-17 99.2 8.3 75 110-190 1-75 (78)
107 1a5t_A Delta prime, HOLB; zinc 99.3 2.3E-11 7.8E-16 119.6 17.7 160 212-402 7-194 (334)
108 2krk_A 26S protease regulatory 99.3 1.9E-12 6.4E-17 100.2 7.4 77 109-191 8-84 (86)
109 2gno_A DNA polymerase III, gam 99.3 1.2E-11 4.2E-16 119.6 14.3 142 211-384 1-152 (305)
110 3k1j_A LON protease, ATP-depen 99.3 5.9E-12 2E-16 133.6 12.6 217 199-449 33-372 (604)
111 3cmw_A Protein RECA, recombina 99.3 3E-12 1E-16 146.6 10.5 148 200-348 1013-1218(1706)
112 2krk_A 26S protease regulatory 99.3 1.8E-12 6E-17 100.3 5.6 75 370-461 10-84 (86)
113 3vlf_B 26S protease regulatory 99.2 1.7E-11 5.8E-16 95.4 8.0 76 113-194 2-77 (88)
114 3aji_B S6C, proteasome (prosom 99.2 6.9E-12 2.4E-16 96.7 4.5 79 372-468 2-80 (83)
115 3aji_B S6C, proteasome (prosom 99.2 3.2E-11 1.1E-15 93.0 7.1 75 113-193 2-76 (83)
116 3vlf_B 26S protease regulatory 99.2 2.5E-11 8.4E-16 94.5 6.3 78 372-466 2-79 (88)
117 3kw6_A 26S protease regulatory 99.2 3.2E-11 1.1E-15 91.8 6.6 73 371-460 3-75 (78)
118 3t15_A Ribulose bisphosphate c 99.2 7E-11 2.4E-15 113.9 10.6 127 18-156 71-222 (293)
119 3ec2_A DNA replication protein 99.1 3.1E-10 1.1E-14 101.0 10.0 134 201-349 4-144 (180)
120 1g41_A Heat shock protein HSLU 99.1 9.1E-10 3.1E-14 110.9 12.8 172 279-470 238-442 (444)
121 4akg_A Glutathione S-transfera 99.0 1.1E-09 3.7E-14 131.0 14.1 138 234-386 1267-1433(2695)
122 2dzn_B 26S protease regulatory 99.0 7.5E-11 2.6E-15 90.6 2.1 79 374-469 1-80 (82)
123 2kjq_A DNAA-related protein; s 99.0 2.5E-10 8.5E-15 98.4 5.1 106 234-369 36-147 (149)
124 2w58_A DNAI, primosome compone 99.0 1.2E-09 4.1E-14 99.1 9.9 103 202-306 20-128 (202)
125 3syl_A Protein CBBX; photosynt 98.9 1.4E-09 4.9E-14 105.3 8.8 141 21-182 112-280 (309)
126 2dzn_B 26S protease regulatory 98.9 3.8E-10 1.3E-14 86.6 2.3 69 115-189 1-69 (82)
127 3dzd_A Transcriptional regulat 98.9 3.7E-08 1.3E-12 97.7 17.3 122 207-348 129-273 (368)
128 4akg_A Glutathione S-transfera 98.9 2.2E-08 7.6E-13 119.9 16.8 254 43-305 1335-1679(2695)
129 1ny5_A Transcriptional regulat 98.8 8.5E-09 2.9E-13 103.2 10.7 202 208-448 138-383 (387)
130 2qgz_A Helicase loader, putati 98.8 5.4E-09 1.8E-13 101.3 8.2 102 203-306 120-227 (308)
131 2fna_A Conserved hypothetical 98.8 5.2E-07 1.8E-11 88.6 22.5 186 202-415 8-250 (357)
132 2vhj_A Ntpase P4, P4; non- hyd 98.8 3.3E-09 1.1E-13 101.7 5.7 118 234-355 123-242 (331)
133 3uk6_A RUVB-like 2; hexameric 98.8 4.3E-08 1.5E-12 97.3 14.0 132 45-188 190-330 (368)
134 3f8t_A Predicted ATPase involv 98.8 3.9E-08 1.4E-12 98.5 13.0 207 209-448 215-479 (506)
135 2qen_A Walker-type ATPase; unk 98.8 4.6E-07 1.6E-11 88.8 19.7 190 202-415 7-246 (350)
136 2r2a_A Uncharacterized protein 98.7 2E-08 6.9E-13 90.5 6.6 124 234-369 5-152 (199)
137 3m6a_A ATP-dependent protease 98.6 7.9E-08 2.7E-12 100.4 10.7 162 22-188 156-341 (543)
138 2z4s_A Chromosomal replication 98.5 7.5E-07 2.6E-11 90.5 14.4 127 44-189 194-333 (440)
139 1ofh_A ATP-dependent HSL prote 98.5 3.1E-07 1E-11 88.6 10.0 154 30-188 98-299 (310)
140 3cmu_A Protein RECA, recombina 98.4 7.4E-07 2.5E-11 103.7 12.1 112 234-345 1427-1561(2050)
141 3bos_A Putative DNA replicatio 98.4 2.4E-06 8.2E-11 78.8 11.4 126 43-186 103-241 (242)
142 3cmw_A Protein RECA, recombina 98.3 8.4E-07 2.9E-11 102.2 9.4 113 234-346 1431-1566(1706)
143 3pfi_A Holliday junction ATP-d 98.3 4.9E-06 1.7E-10 81.3 13.8 139 43-188 105-254 (338)
144 1svm_A Large T antigen; AAA+ f 98.3 1E-06 3.5E-11 87.2 8.0 114 234-368 169-283 (377)
145 3te6_A Regulatory protein SIR3 98.3 4.1E-06 1.4E-10 80.8 11.5 100 14-128 96-214 (318)
146 1tue_A Replication protein E1; 98.2 7E-07 2.4E-11 79.8 4.8 30 234-263 58-87 (212)
147 2v1u_A Cell division control p 98.2 7.8E-06 2.7E-10 81.1 13.1 141 32-189 118-277 (387)
148 3hws_A ATP-dependent CLP prote 98.2 1.9E-06 6.6E-11 85.3 7.6 145 23-168 92-325 (363)
149 2r44_A Uncharacterized protein 98.2 1.9E-05 6.5E-10 76.9 14.1 139 45-190 110-299 (331)
150 1njg_A DNA polymerase III subu 98.2 1.4E-05 4.9E-10 73.3 12.5 118 43-185 125-248 (250)
151 3pxg_A Negative regulator of g 98.2 8E-06 2.7E-10 83.6 11.5 136 29-189 253-407 (468)
152 3vkg_A Dynein heavy chain, cyt 98.2 8.1E-06 2.8E-10 98.8 12.9 138 234-385 1304-1470(3245)
153 1ye8_A Protein THEP1, hypothet 98.2 1.2E-05 4.1E-10 71.0 10.9 28 236-263 2-29 (178)
154 2chg_A Replication factor C sm 98.2 1.7E-05 5.9E-10 71.8 12.3 119 43-186 101-224 (226)
155 1hqc_A RUVB; extended AAA-ATPa 98.1 1.3E-05 4.5E-10 77.6 11.2 137 43-188 89-238 (324)
156 2qby_A CDC6 homolog 1, cell di 98.1 3.1E-05 1.1E-09 76.6 14.0 140 32-189 116-273 (386)
157 1d2n_A N-ethylmaleimide-sensit 98.1 5E-06 1.7E-10 78.7 7.4 114 30-161 111-245 (272)
158 2qby_B CDC6 homolog 3, cell di 98.1 5.4E-05 1.8E-09 75.1 15.1 134 31-189 122-271 (384)
159 1g8p_A Magnesium-chelatase 38 98.0 2E-05 6.8E-10 77.2 11.1 144 44-192 144-326 (350)
160 3pvs_A Replication-associated 98.0 1.7E-05 6E-10 80.5 10.5 138 30-188 89-244 (447)
161 1u0j_A DNA replication protein 98.0 2.8E-05 9.5E-10 72.7 10.3 27 234-260 104-130 (267)
162 3vkg_A Dynein heavy chain, cyt 98.0 3.6E-05 1.2E-09 93.3 13.6 124 236-380 606-749 (3245)
163 1fnn_A CDC6P, cell division co 98.0 0.0002 6.8E-09 71.0 16.9 135 43-189 124-275 (389)
164 1l8q_A Chromosomal replication 97.9 7.6E-05 2.6E-09 72.4 13.1 105 44-164 98-214 (324)
165 1jr3_D DNA polymerase III, del 97.9 0.00012 4.1E-09 71.6 12.7 141 234-402 18-174 (343)
166 3hr8_A Protein RECA; alpha and 97.8 6E-05 2.1E-09 73.8 10.0 111 234-344 61-194 (356)
167 1z6t_A APAF-1, apoptotic prote 97.8 0.00019 6.6E-09 75.6 14.6 166 206-406 123-320 (591)
168 1xp8_A RECA protein, recombina 97.8 7.3E-05 2.5E-09 73.7 10.2 75 234-308 74-167 (366)
169 2r8r_A Sensor protein; KDPD, P 97.8 0.00035 1.2E-08 63.5 13.8 163 235-425 7-211 (228)
170 1qhx_A CPT, protein (chloramph 97.8 6.4E-05 2.2E-09 65.9 8.6 37 234-270 3-39 (178)
171 3io5_A Recombination and repai 97.8 5.7E-05 2E-09 72.1 8.7 78 231-308 25-126 (333)
172 3sfz_A APAF-1, apoptotic pepti 97.8 0.00032 1.1E-08 80.3 16.7 168 206-406 123-320 (1249)
173 2w0m_A SSO2452; RECA, SSPF, un 97.8 6.3E-05 2.2E-09 68.8 8.8 34 234-267 23-59 (235)
174 1in4_A RUVB, holliday junction 97.8 0.00048 1.6E-08 67.1 15.2 139 44-189 102-251 (334)
175 3nbx_X ATPase RAVA; AAA+ ATPas 97.7 9.3E-05 3.2E-09 75.9 10.0 132 44-182 109-280 (500)
176 4fcw_A Chaperone protein CLPB; 97.7 0.00011 3.7E-09 70.7 10.0 123 40-166 115-279 (311)
177 2cvh_A DNA repair and recombin 97.7 0.00012 4.2E-09 66.3 9.3 36 234-269 20-55 (220)
178 1n0w_A DNA repair protein RAD5 97.7 0.00013 4.3E-09 67.4 8.8 74 234-307 24-133 (243)
179 1jr3_A DNA polymerase III subu 97.6 0.00062 2.1E-08 67.0 14.1 130 30-186 102-242 (373)
180 1sxj_A Activator 1 95 kDa subu 97.6 0.00017 5.8E-09 74.7 10.2 130 32-188 132-274 (516)
181 3upu_A ATP-dependent DNA helic 97.6 0.00022 7.5E-09 72.8 10.2 125 201-347 18-166 (459)
182 2zr9_A Protein RECA, recombina 97.6 0.0002 6.9E-09 70.1 9.2 74 234-307 61-153 (349)
183 2z43_A DNA repair and recombin 97.5 0.0001 3.5E-09 71.6 6.8 73 234-307 107-217 (324)
184 1sxj_D Activator 1 41 kDa subu 97.5 0.0007 2.4E-08 66.1 12.9 124 44-186 133-261 (353)
185 2p5t_B PEZT; postsegregational 97.5 0.00035 1.2E-08 65.2 10.2 37 234-270 32-68 (253)
186 1gvn_B Zeta; postsegregational 97.5 0.00035 1.2E-08 66.5 10.2 37 234-270 33-69 (287)
187 1u94_A RECA protein, recombina 97.5 0.00015 5.1E-09 71.2 7.6 74 234-307 63-155 (356)
188 3cmu_A Protein RECA, recombina 97.5 0.00017 5.6E-09 84.4 9.1 113 234-346 732-867 (2050)
189 3u61_B DNA polymerase accessor 97.5 0.00019 6.7E-09 69.4 8.2 119 44-185 105-234 (324)
190 1jbk_A CLPB protein; beta barr 97.5 8.3E-05 2.8E-09 65.4 4.9 73 31-121 102-194 (195)
191 2chq_A Replication factor C sm 97.5 0.0012 4.3E-08 63.2 13.6 117 43-186 101-224 (319)
192 3e1s_A Exodeoxyribonuclease V, 97.5 0.00048 1.6E-08 72.1 11.1 111 212-347 191-317 (574)
193 3trf_A Shikimate kinase, SK; a 97.5 8.9E-05 3E-09 65.5 4.8 32 234-265 5-36 (185)
194 3dm5_A SRP54, signal recogniti 97.5 0.002 6.8E-08 64.7 15.0 72 234-305 100-194 (443)
195 4a74_A DNA repair and recombin 97.4 0.00012 4.1E-09 66.9 5.4 25 234-258 25-49 (231)
196 1v5w_A DMC1, meiotic recombina 97.4 0.00018 6.3E-09 70.4 6.8 39 231-269 118-166 (343)
197 3lda_A DNA repair protein RAD5 97.4 0.00025 8.5E-09 70.7 7.7 75 234-308 178-288 (400)
198 2b8t_A Thymidine kinase; deoxy 97.4 0.00028 9.5E-09 64.4 7.0 72 234-306 12-102 (223)
199 1um8_A ATP-dependent CLP prote 97.4 0.00073 2.5E-08 66.9 10.4 89 95-183 256-360 (376)
200 2orw_A Thymidine kinase; TMTK, 97.3 0.00014 4.8E-09 64.4 4.5 32 235-266 4-38 (184)
201 1g5t_A COB(I)alamin adenosyltr 97.3 0.0014 4.9E-08 58.1 10.9 117 235-368 29-178 (196)
202 3kb2_A SPBC2 prophage-derived 97.3 0.00014 4.9E-09 63.1 4.1 31 236-266 3-33 (173)
203 1sxj_B Activator 1 37 kDa subu 97.3 0.0022 7.5E-08 61.5 12.9 119 44-187 107-230 (323)
204 2ehv_A Hypothetical protein PH 97.3 0.0011 3.7E-08 61.2 10.4 34 234-267 30-67 (251)
205 2iut_A DNA translocase FTSK; n 97.3 0.0012 4.2E-08 68.1 11.5 73 295-380 345-419 (574)
206 3vaa_A Shikimate kinase, SK; s 97.3 0.00018 6.1E-09 64.5 4.8 32 234-265 25-56 (199)
207 1w5s_A Origin recognition comp 97.3 0.0033 1.1E-07 62.6 14.4 131 43-188 137-293 (412)
208 1zuh_A Shikimate kinase; alpha 97.3 0.00021 7.1E-09 62.0 4.7 32 234-265 7-38 (168)
209 3f9v_A Minichromosome maintena 97.3 0.00065 2.2E-08 71.5 9.2 142 44-191 391-590 (595)
210 1kag_A SKI, shikimate kinase I 97.3 0.00021 7.3E-09 62.2 4.6 29 235-263 5-33 (173)
211 2rhm_A Putative kinase; P-loop 97.2 0.00023 7.9E-09 63.1 4.8 31 234-264 5-35 (193)
212 3iij_A Coilin-interacting nucl 97.2 0.00022 7.4E-09 62.7 4.6 31 234-264 11-41 (180)
213 1via_A Shikimate kinase; struc 97.2 0.0002 7E-09 62.6 4.4 29 236-264 6-34 (175)
214 1pzn_A RAD51, DNA repair and r 97.2 0.00052 1.8E-08 67.2 7.5 35 234-268 131-174 (349)
215 2iyv_A Shikimate kinase, SK; t 97.2 0.00024 8.1E-09 62.6 4.6 29 236-264 4-32 (184)
216 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00084 2.9E-08 62.9 8.5 38 234-271 4-44 (260)
217 2a5y_B CED-4; apoptosis; HET: 97.2 0.0031 1.1E-07 65.7 13.4 44 210-256 131-174 (549)
218 2cdn_A Adenylate kinase; phosp 97.2 0.00035 1.2E-08 62.5 5.3 32 234-265 20-51 (201)
219 1y63_A LMAJ004144AAA protein; 97.2 0.00017 5.8E-09 63.8 3.1 31 234-264 10-41 (184)
220 4gp7_A Metallophosphoesterase; 97.1 0.0005 1.7E-08 60.0 5.8 20 234-253 9-28 (171)
221 2i1q_A DNA repair and recombin 97.1 0.00038 1.3E-08 67.4 5.3 24 234-257 98-121 (322)
222 2fz4_A DNA repair protein RAD2 97.1 0.0016 5.5E-08 60.0 9.4 36 236-271 110-146 (237)
223 1e6c_A Shikimate kinase; phosp 97.1 0.00035 1.2E-08 60.7 4.4 29 236-264 4-32 (173)
224 2ze6_A Isopentenyl transferase 97.1 0.0003 1E-08 65.7 4.2 32 236-267 3-34 (253)
225 1tev_A UMP-CMP kinase; ploop, 97.1 0.00039 1.3E-08 61.6 4.7 36 234-271 3-38 (196)
226 3lw7_A Adenylate kinase relate 97.1 0.00036 1.2E-08 60.5 4.2 29 236-265 3-31 (179)
227 3cm0_A Adenylate kinase; ATP-b 97.1 0.00034 1.2E-08 61.6 4.0 30 234-263 4-33 (186)
228 2dr3_A UPF0273 protein PH0284; 97.1 0.0014 4.8E-08 60.3 8.3 34 234-267 23-59 (247)
229 3t61_A Gluconokinase; PSI-biol 97.1 0.00043 1.5E-08 62.0 4.6 31 234-264 18-48 (202)
230 1sxj_E Activator 1 40 kDa subu 97.1 0.0017 5.9E-08 63.4 9.4 102 44-161 134-240 (354)
231 1zp6_A Hypothetical protein AT 97.0 0.00034 1.2E-08 61.9 3.8 37 234-270 9-45 (191)
232 2vli_A Antibiotic resistance p 97.0 0.0003 1E-08 61.8 3.3 30 234-263 5-34 (183)
233 2c95_A Adenylate kinase 1; tra 97.0 0.00044 1.5E-08 61.4 4.5 32 234-265 9-40 (196)
234 1iqp_A RFCS; clamp loader, ext 97.0 0.0028 9.4E-08 60.9 10.5 118 43-185 109-231 (327)
235 2pez_A Bifunctional 3'-phospho 97.0 0.00066 2.2E-08 59.5 5.4 37 234-270 5-44 (179)
236 1aky_A Adenylate kinase; ATP:A 97.0 0.00051 1.7E-08 62.5 4.7 31 234-264 4-34 (220)
237 1ly1_A Polynucleotide kinase; 97.0 0.00035 1.2E-08 61.1 3.4 34 235-270 3-37 (181)
238 2pt5_A Shikimate kinase, SK; a 97.0 0.00052 1.8E-08 59.3 4.5 29 236-264 2-30 (168)
239 1kht_A Adenylate kinase; phosp 97.0 0.00043 1.5E-08 61.1 4.0 25 235-259 4-28 (192)
240 2ius_A DNA translocase FTSK; n 97.0 0.0022 7.7E-08 65.6 9.7 75 294-381 297-374 (512)
241 2bwj_A Adenylate kinase 5; pho 97.0 0.00051 1.8E-08 61.1 4.4 31 234-264 12-42 (199)
242 3fb4_A Adenylate kinase; psych 97.0 0.00051 1.7E-08 62.2 4.5 30 236-265 2-31 (216)
243 3dl0_A Adenylate kinase; phosp 97.0 0.00049 1.7E-08 62.3 4.3 30 236-265 2-31 (216)
244 3jvv_A Twitching mobility prot 97.0 0.00068 2.3E-08 66.5 5.5 69 235-303 124-206 (356)
245 1knq_A Gluconate kinase; ALFA/ 97.0 0.00071 2.4E-08 59.0 5.1 30 234-263 8-37 (175)
246 1qf9_A UMP/CMP kinase, protein 97.0 0.00054 1.8E-08 60.5 4.3 31 234-264 6-36 (194)
247 3tlx_A Adenylate kinase 2; str 97.0 0.0011 3.7E-08 61.4 6.5 32 234-265 29-60 (243)
248 1ak2_A Adenylate kinase isoenz 97.0 0.00061 2.1E-08 62.6 4.7 31 234-264 16-46 (233)
249 3kl4_A SRP54, signal recogniti 96.9 0.0042 1.4E-07 62.3 11.1 72 234-305 97-191 (433)
250 3umf_A Adenylate kinase; rossm 96.9 0.00061 2.1E-08 61.9 4.5 37 234-272 29-65 (217)
251 3sr0_A Adenylate kinase; phosp 96.9 0.0006 2.1E-08 61.5 4.4 33 237-271 3-35 (206)
252 1zd8_A GTP:AMP phosphotransfer 96.9 0.00057 1.9E-08 62.5 4.2 31 234-264 7-37 (227)
253 3uie_A Adenylyl-sulfate kinase 96.9 0.00095 3.2E-08 59.7 5.5 37 234-270 25-64 (200)
254 1ukz_A Uridylate kinase; trans 96.9 0.00077 2.7E-08 60.3 5.0 32 234-265 15-46 (203)
255 2ga8_A Hypothetical 39.9 kDa p 96.9 0.00034 1.2E-08 67.9 2.5 52 211-264 3-54 (359)
256 4eun_A Thermoresistant glucoki 96.9 0.0008 2.7E-08 60.2 4.7 35 234-270 29-63 (200)
257 3be4_A Adenylate kinase; malar 96.9 0.00077 2.6E-08 61.2 4.4 32 234-265 5-36 (217)
258 1zak_A Adenylate kinase; ATP:A 96.8 0.00057 2E-08 62.2 3.5 31 234-264 5-35 (222)
259 2pbr_A DTMP kinase, thymidylat 96.8 0.00097 3.3E-08 58.9 4.8 30 237-266 3-35 (195)
260 1cke_A CK, MSSA, protein (cyti 96.8 0.00093 3.2E-08 60.8 4.7 30 235-264 6-35 (227)
261 3crm_A TRNA delta(2)-isopenten 96.8 0.00078 2.7E-08 64.8 4.3 34 234-267 5-38 (323)
262 1nks_A Adenylate kinase; therm 96.8 0.00085 2.9E-08 59.2 4.3 35 236-270 3-40 (194)
263 1e4v_A Adenylate kinase; trans 96.8 0.00086 2.9E-08 60.7 4.2 30 236-265 2-31 (214)
264 2p65_A Hypothetical protein PF 96.8 0.0009 3.1E-08 58.4 4.2 65 31-113 102-187 (187)
265 1nlf_A Regulatory protein REPA 96.8 0.0037 1.3E-07 59.0 8.7 25 234-258 30-54 (279)
266 2xb4_A Adenylate kinase; ATP-b 96.7 0.001 3.5E-08 60.7 4.4 34 236-271 2-35 (223)
267 2z0h_A DTMP kinase, thymidylat 96.7 0.0012 4.2E-08 58.5 4.8 30 237-266 3-35 (197)
268 2jaq_A Deoxyguanosine kinase; 96.7 0.00096 3.3E-08 59.5 4.2 29 236-264 2-30 (205)
269 1vma_A Cell division protein F 96.7 0.0032 1.1E-07 60.3 7.9 70 234-303 104-196 (306)
270 2eyu_A Twitching motility prot 96.7 0.00083 2.8E-08 62.9 3.7 69 234-303 25-108 (261)
271 3r20_A Cytidylate kinase; stru 96.7 0.0012 4.2E-08 60.5 4.7 31 234-264 9-39 (233)
272 2zts_A Putative uncharacterize 96.7 0.0016 5.5E-08 60.0 5.5 34 234-267 30-67 (251)
273 2v54_A DTMP kinase, thymidylat 96.7 0.0012 4E-08 59.0 4.2 33 234-266 4-37 (204)
274 3nwj_A ATSK2; P loop, shikimat 96.7 0.0012 4.2E-08 61.3 4.3 31 235-265 49-79 (250)
275 2bbw_A Adenylate kinase 4, AK4 96.7 0.0013 4.5E-08 60.8 4.5 30 234-263 27-56 (246)
276 2if2_A Dephospho-COA kinase; a 96.6 0.0012 4E-08 59.1 4.0 29 236-265 3-31 (204)
277 2r6a_A DNAB helicase, replicat 96.6 0.016 5.3E-07 58.8 12.7 34 234-267 203-240 (454)
278 3bh0_A DNAB-like replicative h 96.6 0.0075 2.6E-07 58.0 9.8 37 231-267 64-104 (315)
279 2grj_A Dephospho-COA kinase; T 96.6 0.0016 5.5E-08 57.9 4.4 35 236-272 14-48 (192)
280 3ake_A Cytidylate kinase; CMP 96.6 0.0016 5.4E-08 58.3 4.4 30 236-265 4-33 (208)
281 1w36_D RECD, exodeoxyribonucle 96.6 0.0079 2.7E-07 63.4 10.3 25 234-258 164-188 (608)
282 2px0_A Flagellar biosynthesis 96.5 0.0099 3.4E-07 56.6 10.0 34 234-267 105-142 (296)
283 1jjv_A Dephospho-COA kinase; P 96.5 0.0014 4.7E-08 58.8 3.7 32 236-270 4-35 (206)
284 1rz3_A Hypothetical protein rb 96.5 0.0052 1.8E-07 54.9 7.5 34 234-267 22-58 (201)
285 2yvu_A Probable adenylyl-sulfa 96.5 0.003 1E-07 55.5 5.7 37 234-270 13-52 (186)
286 1uj2_A Uridine-cytidine kinase 96.5 0.0026 8.9E-08 59.1 5.4 38 234-271 22-67 (252)
287 2plr_A DTMP kinase, probable t 96.5 0.0017 5.8E-08 58.2 3.9 32 234-265 4-37 (213)
288 3k1j_A LON protease, ATP-depen 96.4 0.024 8.2E-07 59.7 13.1 141 43-187 200-374 (604)
289 2wwf_A Thymidilate kinase, put 96.4 0.00079 2.7E-08 60.6 1.4 28 234-261 10-37 (212)
290 3rlf_A Maltose/maltodextrin im 96.4 0.0034 1.2E-07 61.8 6.0 24 235-258 30-53 (381)
291 1uf9_A TT1252 protein; P-loop, 96.4 0.0023 8E-08 56.9 4.4 35 234-271 8-42 (203)
292 2ewv_A Twitching motility prot 96.4 0.0023 8E-08 63.1 4.6 70 234-303 136-219 (372)
293 3a8t_A Adenylate isopentenyltr 96.4 0.0015 5.3E-08 63.0 3.2 35 234-268 40-74 (339)
294 3foz_A TRNA delta(2)-isopenten 96.4 0.002 6.7E-08 61.4 3.8 34 234-267 10-43 (316)
295 4e22_A Cytidylate kinase; P-lo 96.4 0.0028 9.4E-08 59.0 4.7 30 234-263 27-56 (252)
296 1a5t_A Delta prime, HOLB; zinc 96.3 0.014 4.7E-07 56.6 9.8 106 30-159 91-206 (334)
297 2pt7_A CAG-ALFA; ATPase, prote 96.3 0.0021 7.3E-08 62.3 3.9 70 234-303 171-250 (330)
298 2j37_W Signal recognition part 96.3 0.038 1.3E-06 56.5 13.3 34 234-267 101-137 (504)
299 2q6t_A DNAB replication FORK h 96.3 0.023 7.8E-07 57.4 11.6 37 231-267 196-237 (444)
300 4b3f_X DNA-binding protein smu 96.3 0.016 5.3E-07 61.7 10.8 72 210-299 189-263 (646)
301 1nn5_A Similar to deoxythymidy 96.3 0.0011 3.8E-08 59.6 1.6 26 234-259 9-34 (215)
302 2xau_A PRE-mRNA-splicing facto 96.3 0.02 6.9E-07 62.0 11.5 23 235-257 110-132 (773)
303 1vht_A Dephospho-COA kinase; s 96.3 0.0032 1.1E-07 56.9 4.5 30 234-264 4-33 (218)
304 2h92_A Cytidylate kinase; ross 96.2 0.0034 1.2E-07 56.7 4.6 31 234-264 3-33 (219)
305 2qor_A Guanylate kinase; phosp 96.2 0.0024 8.2E-08 57.2 3.5 26 234-259 12-37 (204)
306 1ex7_A Guanylate kinase; subst 96.2 0.0038 1.3E-07 55.1 4.5 28 235-262 2-29 (186)
307 3exa_A TRNA delta(2)-isopenten 96.2 0.0028 9.7E-08 60.4 3.9 35 234-268 3-37 (322)
308 3c8u_A Fructokinase; YP_612366 96.2 0.0039 1.3E-07 56.0 4.7 26 234-259 22-47 (208)
309 1w4r_A Thymidine kinase; type 96.2 0.0036 1.2E-07 55.4 4.2 70 234-305 20-103 (195)
310 1q3t_A Cytidylate kinase; nucl 96.2 0.0041 1.4E-07 57.1 4.6 31 234-264 16-46 (236)
311 3b6e_A Interferon-induced heli 96.1 0.019 6.5E-07 51.3 9.1 24 235-258 49-72 (216)
312 1tf7_A KAIC; homohexamer, hexa 96.1 0.03 1E-06 57.8 11.7 106 234-348 281-417 (525)
313 1m7g_A Adenylylsulfate kinase; 96.1 0.0038 1.3E-07 56.2 4.3 37 234-270 25-65 (211)
314 2bdt_A BH3686; alpha-beta prot 96.1 0.0038 1.3E-07 55.0 4.2 34 236-270 4-37 (189)
315 1kgd_A CASK, peripheral plasma 96.1 0.0033 1.1E-07 55.1 3.6 26 234-259 5-30 (180)
316 3d3q_A TRNA delta(2)-isopenten 96.1 0.0031 1E-07 61.0 3.5 33 235-267 8-40 (340)
317 2v3c_C SRP54, signal recogniti 96.0 0.017 5.8E-07 58.0 8.9 35 234-268 99-136 (432)
318 3tui_C Methionine import ATP-b 96.0 0.008 2.7E-07 58.8 6.3 24 235-258 55-78 (366)
319 3zvl_A Bifunctional polynucleo 96.0 0.0048 1.6E-07 61.9 4.9 30 234-263 258-287 (416)
320 3llm_A ATP-dependent RNA helic 96.0 0.026 8.9E-07 51.6 9.5 22 234-255 76-97 (235)
321 1xx6_A Thymidine kinase; NESG, 96.0 0.0061 2.1E-07 54.0 4.9 71 234-306 8-94 (191)
322 1ltq_A Polynucleotide kinase; 96.0 0.0038 1.3E-07 59.5 3.8 34 235-270 3-37 (301)
323 1odf_A YGR205W, hypothetical 3 96.0 0.0097 3.3E-07 56.5 6.5 26 234-259 31-56 (290)
324 2qmh_A HPR kinase/phosphorylas 96.0 0.0036 1.2E-07 55.5 3.3 32 234-266 34-65 (205)
325 2f6r_A COA synthase, bifunctio 96.0 0.0044 1.5E-07 58.6 4.2 34 234-270 75-108 (281)
326 1ojl_A Transcriptional regulat 96.0 0.0058 2E-07 58.5 5.0 128 44-182 96-246 (304)
327 2axn_A 6-phosphofructo-2-kinas 96.0 0.018 6.3E-07 59.3 9.0 39 234-272 35-76 (520)
328 3tau_A Guanylate kinase, GMP k 96.0 0.0039 1.3E-07 56.1 3.4 26 234-259 8-33 (208)
329 3fdi_A Uncharacterized protein 95.9 0.0048 1.7E-07 55.2 4.0 29 236-264 8-36 (201)
330 3a00_A Guanylate kinase, GMP k 95.9 0.0043 1.5E-07 54.6 3.5 24 236-259 3-26 (186)
331 2j41_A Guanylate kinase; GMP, 95.9 0.0039 1.3E-07 55.6 3.1 25 234-258 6-30 (207)
332 2qt1_A Nicotinamide riboside k 95.9 0.0036 1.2E-07 56.1 2.9 29 234-262 21-50 (207)
333 3e70_C DPA, signal recognition 95.9 0.029 9.9E-07 54.2 9.4 25 234-258 129-153 (328)
334 1x6v_B Bifunctional 3'-phospho 95.9 0.0072 2.5E-07 63.3 5.4 38 233-270 51-91 (630)
335 1q57_A DNA primase/helicase; d 95.9 0.022 7.4E-07 58.6 9.0 37 231-267 238-279 (503)
336 3tr0_A Guanylate kinase, GMP k 95.8 0.005 1.7E-07 54.8 3.6 26 234-259 7-32 (205)
337 1j8m_F SRP54, signal recogniti 95.8 0.035 1.2E-06 52.7 9.7 69 234-302 98-189 (297)
338 2gxq_A Heat resistant RNA depe 95.8 0.088 3E-06 46.5 11.9 18 235-252 39-56 (207)
339 3ney_A 55 kDa erythrocyte memb 95.8 0.0062 2.1E-07 54.2 4.0 26 234-259 19-44 (197)
340 2yhs_A FTSY, cell division pro 95.8 0.04 1.4E-06 55.9 10.4 25 234-258 293-317 (503)
341 2oap_1 GSPE-2, type II secreti 95.8 0.0046 1.6E-07 63.6 3.5 70 234-303 260-343 (511)
342 4a1f_A DNAB helicase, replicat 95.7 0.03 1E-06 54.2 8.8 34 234-267 46-82 (338)
343 3tqc_A Pantothenate kinase; bi 95.7 0.026 9E-07 54.2 8.4 26 234-259 92-117 (321)
344 3asz_A Uridine kinase; cytidin 95.7 0.0056 1.9E-07 54.9 3.5 33 234-266 6-38 (211)
345 3bgw_A DNAB-like replicative h 95.7 0.035 1.2E-06 56.0 9.6 37 231-267 193-233 (444)
346 3thx_B DNA mismatch repair pro 95.7 0.035 1.2E-06 60.9 10.1 22 235-256 674-695 (918)
347 2bjv_A PSP operon transcriptio 95.7 0.031 1.1E-06 52.0 8.5 116 44-164 100-239 (265)
348 1m8p_A Sulfate adenylyltransfe 95.6 0.036 1.2E-06 57.8 9.6 38 234-271 396-437 (573)
349 1lvg_A Guanylate kinase, GMP k 95.6 0.0065 2.2E-07 54.2 3.5 26 234-259 4-29 (198)
350 1zu4_A FTSY; GTPase, signal re 95.6 0.055 1.9E-06 52.0 10.3 34 234-267 105-141 (320)
351 3eph_A TRNA isopentenyltransfe 95.6 0.0066 2.2E-07 60.0 3.7 33 235-267 3-35 (409)
352 2ged_A SR-beta, signal recogni 95.6 0.012 4.3E-07 51.5 5.2 47 212-258 26-72 (193)
353 1hv8_A Putative ATP-dependent 95.5 0.099 3.4E-06 50.5 11.9 33 235-267 45-82 (367)
354 1ls1_A Signal recognition part 95.5 0.035 1.2E-06 52.8 8.1 69 234-302 98-189 (295)
355 2j9r_A Thymidine kinase; TK1, 95.4 0.021 7.1E-07 51.3 6.0 32 236-267 30-64 (214)
356 3gmt_A Adenylate kinase; ssgci 95.4 0.011 3.7E-07 53.9 4.2 33 237-271 11-43 (230)
357 1sxj_C Activator 1 40 kDa subu 95.4 0.044 1.5E-06 53.0 9.0 89 44-148 110-203 (340)
358 1c9k_A COBU, adenosylcobinamid 95.4 0.0086 2.9E-07 52.4 3.3 32 237-269 2-33 (180)
359 2xxa_A Signal recognition part 95.4 0.033 1.1E-06 55.9 8.0 69 234-302 100-192 (433)
360 3vkw_A Replicase large subunit 95.3 0.028 9.5E-07 56.2 7.2 23 234-256 161-183 (446)
361 1gtv_A TMK, thymidylate kinase 95.3 0.0043 1.5E-07 55.7 1.2 24 237-260 3-26 (214)
362 1vt4_I APAF-1 related killer D 95.3 0.041 1.4E-06 60.7 8.9 43 210-257 131-173 (1221)
363 3hdt_A Putative kinase; struct 95.3 0.011 3.7E-07 53.8 3.8 30 235-264 15-44 (223)
364 1htw_A HI0065; nucleotide-bind 95.3 0.01 3.6E-07 50.8 3.4 25 234-258 33-57 (158)
365 1tf7_A KAIC; homohexamer, hexa 95.2 0.051 1.7E-06 56.1 9.0 34 234-267 39-76 (525)
366 1znw_A Guanylate kinase, GMP k 95.2 0.01 3.5E-07 53.2 3.3 26 234-259 20-45 (207)
367 3thx_A DNA mismatch repair pro 95.2 0.068 2.3E-06 58.8 10.3 22 235-256 663-684 (934)
368 1t6n_A Probable ATP-dependent 95.2 0.41 1.4E-05 42.7 14.1 24 235-258 52-75 (220)
369 1z6g_A Guanylate kinase; struc 95.2 0.011 3.9E-07 53.5 3.5 25 234-258 23-47 (218)
370 3tqf_A HPR(Ser) kinase; transf 95.2 0.015 5E-07 50.3 3.9 27 234-261 16-42 (181)
371 2pl3_A Probable ATP-dependent 95.2 0.2 7E-06 45.3 12.1 51 202-252 23-80 (236)
372 1a7j_A Phosphoribulokinase; tr 95.1 0.0079 2.7E-07 57.1 2.4 36 235-270 6-44 (290)
373 4eaq_A DTMP kinase, thymidylat 95.1 0.012 4.1E-07 53.8 3.5 32 234-265 26-59 (229)
374 3p32_A Probable GTPase RV1496/ 95.1 0.1 3.5E-06 50.9 10.4 33 234-266 79-114 (355)
375 1s96_A Guanylate kinase, GMP k 95.1 0.013 4.4E-07 53.2 3.6 26 234-259 16-41 (219)
376 2jeo_A Uridine-cytidine kinase 95.1 0.012 4.1E-07 54.2 3.5 27 235-261 26-52 (245)
377 1p9r_A General secretion pathw 95.1 0.027 9.2E-07 56.3 6.2 92 204-302 144-245 (418)
378 2i3b_A HCR-ntpase, human cance 95.0 0.013 4.5E-07 51.7 3.5 23 236-258 3-25 (189)
379 1qde_A EIF4A, translation init 95.0 0.13 4.6E-06 46.1 10.1 48 203-250 13-67 (224)
380 3aez_A Pantothenate kinase; tr 94.9 0.043 1.5E-06 52.5 6.8 26 234-259 90-115 (312)
381 1q0u_A Bstdead; DEAD protein, 94.8 0.2 6.9E-06 44.8 11.0 19 235-253 42-60 (219)
382 3b9q_A Chloroplast SRP recepto 94.8 0.04 1.4E-06 52.5 6.4 25 234-258 100-124 (302)
383 1xti_A Probable ATP-dependent 94.8 0.26 8.7E-06 48.2 12.5 23 234-256 45-67 (391)
384 2orv_A Thymidine kinase; TP4A 94.8 0.14 4.8E-06 46.4 9.5 69 235-306 20-103 (234)
385 2j0s_A ATP-dependent RNA helic 94.8 0.18 6.2E-06 49.7 11.4 53 203-255 36-95 (410)
386 3fmo_B ATP-dependent RNA helic 94.7 0.22 7.6E-06 47.2 11.5 50 201-251 89-148 (300)
387 1xjc_A MOBB protein homolog; s 94.7 0.032 1.1E-06 48.3 4.9 32 235-266 5-39 (169)
388 1g8f_A Sulfate adenylyltransfe 94.7 0.023 7.9E-07 58.1 4.6 27 234-260 395-421 (511)
389 1wb9_A DNA mismatch repair pro 94.6 0.11 3.7E-06 56.3 9.9 24 234-257 607-630 (800)
390 1sq5_A Pantothenate kinase; P- 94.6 0.077 2.6E-06 50.6 8.0 26 234-259 80-105 (308)
391 2v9p_A Replication protein E1; 94.6 0.021 7.2E-07 54.4 3.8 29 234-262 126-154 (305)
392 2gks_A Bifunctional SAT/APS ki 94.6 0.12 4.1E-06 53.5 9.7 38 234-271 372-412 (546)
393 3fe2_A Probable ATP-dependent 94.6 0.34 1.2E-05 44.1 11.9 52 201-252 26-84 (242)
394 3lnc_A Guanylate kinase, GMP k 94.5 0.013 4.4E-07 53.5 2.1 24 235-258 28-52 (231)
395 1rj9_A FTSY, signal recognitio 94.5 0.025 8.6E-07 54.0 4.2 25 234-258 102-126 (304)
396 1bif_A 6-phosphofructo-2-kinas 94.5 0.1 3.4E-06 53.0 8.9 37 234-270 39-78 (469)
397 3fmp_B ATP-dependent RNA helic 94.5 0.27 9.3E-06 49.8 12.2 49 202-251 90-148 (479)
398 2ffh_A Protein (FFH); SRP54, s 94.5 0.092 3.1E-06 52.4 8.3 70 234-303 98-190 (425)
399 1cr0_A DNA primase/helicase; R 94.5 0.031 1.1E-06 53.0 4.7 33 234-266 35-71 (296)
400 1sky_E F1-ATPase, F1-ATP synth 94.4 0.039 1.3E-06 55.6 5.4 25 234-258 151-175 (473)
401 4i1u_A Dephospho-COA kinase; s 94.4 0.032 1.1E-06 50.0 4.3 29 236-265 11-39 (210)
402 2og2_A Putative signal recogni 94.4 0.059 2E-06 52.6 6.5 25 234-258 157-181 (359)
403 2ocp_A DGK, deoxyguanosine kin 94.4 0.028 9.4E-07 51.6 3.9 26 234-259 2-27 (241)
404 3pey_A ATP-dependent RNA helic 94.3 0.38 1.3E-05 46.8 12.5 21 234-254 44-64 (395)
405 3j16_B RLI1P; ribosome recycli 94.3 0.051 1.7E-06 57.0 6.3 25 234-258 103-127 (608)
406 3kta_A Chromosome segregation 94.3 0.027 9.2E-07 49.0 3.6 25 235-259 27-51 (182)
407 1np6_A Molybdopterin-guanine d 94.3 0.026 8.9E-07 49.1 3.4 24 235-258 7-30 (174)
408 1p5z_B DCK, deoxycytidine kina 94.3 0.012 4.1E-07 54.9 1.3 26 234-259 24-49 (263)
409 3tif_A Uncharacterized ABC tra 94.3 0.018 6.3E-07 52.7 2.5 25 235-259 32-56 (235)
410 2onk_A Molybdate/tungstate ABC 94.2 0.023 7.8E-07 52.3 3.1 23 236-258 26-48 (240)
411 2pcj_A ABC transporter, lipopr 94.1 0.019 6.4E-07 52.3 2.2 25 235-259 31-55 (224)
412 2gk6_A Regulator of nonsense t 94.1 0.034 1.2E-06 58.8 4.5 38 212-258 182-219 (624)
413 4edh_A DTMP kinase, thymidylat 94.1 0.049 1.7E-06 49.1 4.9 33 234-266 6-41 (213)
414 3cr8_A Sulfate adenylyltranfer 94.1 0.026 9E-07 58.4 3.4 38 234-271 369-410 (552)
415 3b85_A Phosphate starvation-in 94.0 0.02 6.9E-07 51.4 2.2 23 235-257 23-45 (208)
416 1vec_A ATP-dependent RNA helic 94.0 0.15 5.2E-06 45.0 8.1 18 235-252 41-58 (206)
417 2cbz_A Multidrug resistance-as 94.0 0.022 7.5E-07 52.3 2.5 25 234-258 31-55 (237)
418 1wp9_A ATP-dependent RNA helic 94.0 0.21 7.3E-06 49.9 10.2 36 236-271 25-65 (494)
419 2qm8_A GTPase/ATPase; G protei 94.0 0.092 3.1E-06 50.8 6.9 25 234-258 55-79 (337)
420 2f1r_A Molybdopterin-guanine d 93.9 0.021 7.1E-07 49.6 2.1 24 236-259 4-27 (171)
421 2r2a_A Uncharacterized protein 93.9 0.054 1.8E-06 48.2 4.8 65 42-117 85-158 (199)
422 1sgw_A Putative ABC transporte 93.9 0.024 8.2E-07 51.1 2.5 25 235-259 36-60 (214)
423 3fvq_A Fe(3+) IONS import ATP- 93.9 0.024 8.3E-07 55.3 2.7 23 236-258 32-54 (359)
424 3sop_A Neuronal-specific septi 93.8 0.031 1.1E-06 52.4 3.2 23 236-258 4-26 (270)
425 1b0u_A Histidine permease; ABC 93.8 0.025 8.7E-07 52.7 2.5 25 235-259 33-57 (262)
426 2p6r_A Afuhel308 helicase; pro 93.8 0.12 4.3E-06 55.2 8.3 34 234-267 40-76 (702)
427 1ewq_A DNA mismatch repair pro 93.8 0.19 6.7E-06 54.0 9.7 23 235-257 577-599 (765)
428 3tmk_A Thymidylate kinase; pho 93.8 0.061 2.1E-06 48.5 4.9 32 234-265 5-36 (216)
429 2v6i_A RNA helicase; membrane, 93.7 0.19 6.7E-06 50.3 9.1 34 234-267 2-39 (431)
430 2d2e_A SUFC protein; ABC-ATPas 93.7 0.032 1.1E-06 51.7 3.0 23 235-257 30-52 (250)
431 1z47_A CYSA, putative ABC-tran 93.7 0.031 1.1E-06 54.5 3.0 24 235-258 42-65 (355)
432 2va8_A SSO2462, SKI2-type heli 93.7 0.53 1.8E-05 50.3 13.1 34 234-267 46-83 (715)
433 3gfo_A Cobalt import ATP-bindi 93.7 0.027 9.4E-07 52.9 2.5 24 235-258 35-58 (275)
434 1lw7_A Transcriptional regulat 93.7 0.039 1.3E-06 54.1 3.7 27 235-261 171-197 (365)
435 2zu0_C Probable ATP-dependent 93.7 0.033 1.1E-06 52.1 3.1 23 235-257 47-69 (267)
436 1mv5_A LMRA, multidrug resista 93.7 0.028 9.6E-07 51.8 2.5 25 234-258 28-52 (243)
437 3v9p_A DTMP kinase, thymidylat 93.7 0.047 1.6E-06 49.7 4.0 25 234-258 25-49 (227)
438 2it1_A 362AA long hypothetical 93.7 0.032 1.1E-06 54.5 3.1 23 236-258 31-53 (362)
439 1g6h_A High-affinity branched- 93.7 0.028 9.5E-07 52.3 2.5 24 235-258 34-57 (257)
440 1ji0_A ABC transporter; ATP bi 93.7 0.028 9.6E-07 51.7 2.5 25 235-259 33-57 (240)
441 1s2m_A Putative ATP-dependent 93.7 0.74 2.5E-05 45.0 13.1 21 235-255 59-79 (400)
442 2ff7_A Alpha-hemolysin translo 93.6 0.028 9.6E-07 51.9 2.5 24 235-258 36-59 (247)
443 3tbk_A RIG-I helicase domain; 93.6 0.73 2.5E-05 47.1 13.6 34 234-267 19-60 (555)
444 2yyz_A Sugar ABC transporter, 93.6 0.033 1.1E-06 54.4 3.0 24 235-258 30-53 (359)
445 2olj_A Amino acid ABC transpor 93.6 0.029 1E-06 52.3 2.5 25 235-259 51-75 (263)
446 1v43_A Sugar-binding transport 93.6 0.034 1.2E-06 54.6 3.1 24 235-258 38-61 (372)
447 3iuy_A Probable ATP-dependent 93.6 0.1 3.6E-06 47.0 6.2 19 234-252 57-75 (228)
448 2pze_A Cystic fibrosis transme 93.5 0.034 1.2E-06 50.7 2.8 24 235-258 35-58 (229)
449 3d31_A Sulfate/molybdate ABC t 93.5 0.029 9.9E-07 54.6 2.4 24 235-258 27-50 (348)
450 2f9l_A RAB11B, member RAS onco 93.5 0.04 1.4E-06 48.6 3.2 22 236-257 7-28 (199)
451 4g1u_C Hemin import ATP-bindin 93.5 0.031 1E-06 52.3 2.5 24 235-258 38-61 (266)
452 2qi9_C Vitamin B12 import ATP- 93.5 0.031 1.1E-06 51.7 2.5 25 235-259 27-51 (249)
453 1oix_A RAS-related protein RAB 93.5 0.037 1.3E-06 48.6 2.9 23 236-258 31-53 (191)
454 2p67_A LAO/AO transport system 93.5 0.34 1.2E-05 46.8 10.1 25 234-258 56-80 (341)
455 1g29_1 MALK, maltose transport 93.5 0.036 1.2E-06 54.5 3.0 24 235-258 30-53 (372)
456 2ixe_A Antigen peptide transpo 93.4 0.032 1.1E-06 52.3 2.5 24 235-258 46-69 (271)
457 1vpl_A ABC transporter, ATP-bi 93.4 0.033 1.1E-06 51.7 2.5 24 235-258 42-65 (256)
458 3ld9_A DTMP kinase, thymidylat 93.4 0.055 1.9E-06 49.0 3.9 27 234-260 21-47 (223)
459 2ihy_A ABC transporter, ATP-bi 93.4 0.033 1.1E-06 52.4 2.5 24 235-258 48-71 (279)
460 2wjy_A Regulator of nonsense t 93.4 0.055 1.9E-06 58.7 4.6 38 212-258 358-395 (800)
461 2ghi_A Transport protein; mult 93.4 0.037 1.3E-06 51.5 2.8 25 234-258 46-70 (260)
462 2wsm_A Hydrogenase expression/ 93.3 0.076 2.6E-06 47.6 4.8 26 234-259 30-55 (221)
463 4f4c_A Multidrug resistance pr 93.3 0.14 4.9E-06 58.8 8.1 26 234-259 444-469 (1321)
464 1gm5_A RECG; helicase, replica 93.3 0.39 1.3E-05 51.8 11.1 34 234-267 389-425 (780)
465 3ly5_A ATP-dependent RNA helic 93.3 0.12 4.1E-06 47.9 6.3 19 235-253 92-110 (262)
466 2gno_A DNA polymerase III, gam 93.3 0.11 3.7E-06 49.6 6.0 77 31-125 66-152 (305)
467 3fht_A ATP-dependent RNA helic 93.3 0.6 2.1E-05 45.8 11.8 51 201-252 22-82 (412)
468 2yz2_A Putative ABC transporte 93.3 0.035 1.2E-06 51.9 2.5 24 235-258 34-57 (266)
469 2nq2_C Hypothetical ABC transp 93.2 0.037 1.3E-06 51.3 2.5 24 235-258 32-55 (253)
470 2dyk_A GTP-binding protein; GT 93.2 0.052 1.8E-06 45.6 3.4 22 236-257 3-24 (161)
471 3eiq_A Eukaryotic initiation f 93.2 0.53 1.8E-05 46.2 11.3 20 234-253 77-96 (414)
472 2gza_A Type IV secretion syste 93.2 0.036 1.2E-06 54.3 2.5 70 234-303 175-262 (361)
473 3k53_A Ferrous iron transport 93.2 0.087 3E-06 49.2 5.1 23 235-257 4-26 (271)
474 4a2p_A RIG-I, retinoic acid in 93.2 0.58 2E-05 48.0 11.9 33 235-267 23-63 (556)
475 2pjz_A Hypothetical protein ST 93.1 0.039 1.3E-06 51.4 2.5 23 236-258 32-54 (263)
476 1oxx_K GLCV, glucose, ABC tran 93.1 0.031 1E-06 54.5 1.8 24 235-258 32-55 (353)
477 3lv8_A DTMP kinase, thymidylat 93.0 0.056 1.9E-06 49.5 3.4 25 234-258 27-51 (236)
478 1z2a_A RAS-related protein RAB 93.0 0.058 2E-06 45.6 3.3 23 235-257 6-28 (168)
479 2zj8_A DNA helicase, putative 92.9 0.29 1E-05 52.5 9.5 34 234-267 39-76 (720)
480 2zej_A Dardarin, leucine-rich 92.9 0.045 1.5E-06 47.6 2.6 21 236-256 4-24 (184)
481 3gd7_A Fusion complex of cysti 92.9 0.044 1.5E-06 54.1 2.7 23 235-257 48-70 (390)
482 2wji_A Ferrous iron transport 92.9 0.054 1.9E-06 46.1 3.0 21 236-256 5-25 (165)
483 1nrj_B SR-beta, signal recogni 92.9 0.061 2.1E-06 48.1 3.5 25 234-258 12-36 (218)
484 3ber_A Probable ATP-dependent 92.9 0.27 9.3E-06 45.1 8.0 19 234-252 80-98 (249)
485 1kao_A RAP2A; GTP-binding prot 92.8 0.064 2.2E-06 45.2 3.4 23 235-257 4-26 (167)
486 3l9o_A ATP-dependent RNA helic 92.8 0.24 8.1E-06 55.8 8.7 34 234-267 199-235 (1108)
487 3dkp_A Probable ATP-dependent 92.7 0.56 1.9E-05 42.6 9.9 18 234-251 66-83 (245)
488 1yrb_A ATP(GTP)binding protein 92.7 0.13 4.4E-06 47.4 5.6 34 234-267 14-49 (262)
489 2ce2_X GTPase HRAS; signaling 92.7 0.061 2.1E-06 45.2 3.0 22 236-257 5-26 (166)
490 2hf9_A Probable hydrogenase ni 92.7 0.13 4.6E-06 46.1 5.5 25 234-258 38-62 (226)
491 1tq4_A IIGP1, interferon-induc 92.7 0.12 4E-06 51.5 5.4 37 217-257 56-92 (413)
492 1ek0_A Protein (GTP-binding pr 92.6 0.069 2.4E-06 45.2 3.3 23 235-257 4-26 (170)
493 1u8z_A RAS-related protein RAL 92.6 0.069 2.4E-06 45.0 3.3 23 235-257 5-27 (168)
494 1wms_A RAB-9, RAB9, RAS-relate 92.6 0.072 2.5E-06 45.5 3.4 23 235-257 8-30 (177)
495 1z0j_A RAB-22, RAS-related pro 92.6 0.073 2.5E-06 45.1 3.4 24 235-258 7-30 (170)
496 2xzl_A ATP-dependent helicase 92.5 0.077 2.6E-06 57.6 4.2 36 212-256 362-397 (802)
497 4tmk_A Protein (thymidylate ki 92.5 0.068 2.3E-06 48.1 3.1 24 235-258 4-27 (213)
498 2nzj_A GTP-binding protein REM 92.5 0.068 2.3E-06 45.6 3.1 22 235-256 5-26 (175)
499 2gj8_A MNME, tRNA modification 92.4 0.067 2.3E-06 46.0 3.0 24 234-257 4-27 (172)
500 3cph_A RAS-related protein SEC 92.4 0.076 2.6E-06 47.1 3.4 24 234-257 20-43 (213)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.9e-72 Score=602.01 Aligned_cols=427 Identities=35% Similarity=0.554 Sum_probs=328.7
Q ss_pred HHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch----------hhHhhhccccccccccccchhhhccCC
Q psy450 18 HLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK----------YVYFKLCSFDSVNVKSNETKDQQCKQQ 87 (478)
Q Consensus 18 ~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r----------~~~~~l~~~d~~~~~~~~~~~~~~~~~ 87 (478)
.++++|.++... +++.+|. .|++.+||||||||+|+|+++| +++++|+.||++ ..+
T Consensus 273 ~l~sk~~gese~-~lr~lF~-~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~------------~~~ 338 (806)
T 3cf2_A 273 EIMSKLAGESES-NLRKAFE-EAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL------------KQR 338 (806)
T ss_dssp HHHSSCTTHHHH-HHHHHHH-HHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHC------------CGG
T ss_pred HhhcccchHHHH-HHHHHHH-HHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcc------------ccc
Confidence 345666666655 9999999 9999999999999999999875 789999999965 445
Q ss_pred CcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHH
Q psy450 88 HKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLV 158 (478)
Q Consensus 88 ~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~ 158 (478)
++|+||| +|||++| |||++|+|+.||.++|.+||+.+++++ ++..++++ +.+|..|+||+|+||..+|
T Consensus 339 ~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~--~~~~dvdl-~~lA~~T~GfsgaDL~~Lv 415 (806)
T 3cf2_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM--KLADDVDL-EQVANETHGHVGADLAALC 415 (806)
T ss_dssp GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSS--EECTTCCH-HHHHHHCCSCCHHHHHHHH
T ss_pred CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCC--CCCcccCH-HHHHHhcCCCCHHHHHHHH
Confidence 6799998 9999999 999999999999999999999999887 56778888 9999999999999999999
Q ss_pred HHHHHHHHHhhc--------------CCCCCCCHHHHHHHHHHhhhhcccCCCCCCCCCCCcccccCcHHHHHHHHHHHH
Q psy450 159 RLSVKNKMLKQG--------------INKRDLQKEDFQQIYDDLQSRYSDQLDAPSVPNVSWEDIGGLSKLKAEILSTFR 224 (478)
Q Consensus 159 ~~a~~~a~~~~~--------------~~~~~it~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~ 224 (478)
++|+..++.+.. .....++.+||..|+..++|+..+.. ....|+++|++++|++++|+.|.+.+.
T Consensus 416 ~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~-~~~~p~v~w~diggl~~~k~~l~e~v~ 494 (806)
T 3cf2_A 416 SEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRET-VVEVPQVTWEDIGGLEDVKRELQELVQ 494 (806)
T ss_dssp HHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCC-CCBCCCCCSTTCCSCHHHHHHHTTTTT
T ss_pred HHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccc-cccCCCCCHHHhCCHHHHHHHHHHHHH
Confidence 999998875411 12456889999999999999876654 567899999999999999999999999
Q ss_pred hhhh------hCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHHHHHHHHHhHhCCCeEE
Q psy450 225 GVNR------TSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVV 297 (478)
Q Consensus 225 ~~~~------~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il 297 (478)
+|.. ..|.. ++++|||||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|..|+...||||
T Consensus 495 ~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~Ii 574 (806)
T 3cf2_A 495 YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVL 574 (806)
T ss_dssp TTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEE
T ss_pred hhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCcee
Confidence 8843 23444 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccccCCCCCC-CCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHH
Q psy450 298 FFDELDSLAPRRGQE-DQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQ 376 (478)
Q Consensus 298 ~iDeid~l~~~~~~~-~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r 376 (478)
||||+|.++++|+.. +...+..++++++||.+||++....+++||+|||+|+.||++++|||||++.|++++ |+.++|
T Consensus 575 fiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~l-Pd~~~R 653 (806)
T 3cf2_A 575 FFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL-PDEKSR 653 (806)
T ss_dssp ECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC------CHH
T ss_pred echhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECC-cCHHHH
Confidence 999999999988643 234456679999999999999888899999999999999999999999999999998 699999
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC---------------CCCCCcccc
Q psy450 377 LGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQ---------------VKSAPVIVT 441 (478)
Q Consensus 377 ~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~---------------~~~~~~~it 441 (478)
.+||+.++++.++..++++..||+.+ +||||+||.++|++|++.|+++.+..... .......||
T Consensus 654 ~~il~~~l~~~~~~~~~dl~~la~~t-~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 732 (806)
T 3cf2_A 654 VAILKANLRKSPVAKDVDLEFLAKMT-NGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIR 732 (806)
T ss_dssp HHTTTTTSSCC--CCC-----------------CHHHHHHHHHHHHHHHHHC-----------------------CCC--
T ss_pred HHHHHHHhcCCCCCCCCCHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccC
Confidence 99999999999999999999999987 89999999999999999999997643210 012234699
Q ss_pred HHHHHhchhccCCCccccccccccccccc
Q psy450 442 MDDFLGACSLATAPDKFSQSVAPDNYSLS 470 (478)
Q Consensus 442 ~~d~~~A~~~~~~l~~~~ps~~~~~~~~~ 470 (478)
++||.+| +++++||++++++..+
T Consensus 733 ~~df~~a------l~~~~pSvs~~~l~~y 755 (806)
T 3cf2_A 733 RDHFEEA------MRFARRSVSDNDIRKY 755 (806)
T ss_dssp --CCTTT------C---------------
T ss_pred HHHHHHH------HHhCCCCCCHHHHHHH
Confidence 9999999 9999999999887654
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-48 Score=385.98 Aligned_cols=250 Identities=35% Similarity=0.614 Sum_probs=227.3
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhhhh------hCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhh
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGVNR------TSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPEL 270 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~------~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l 270 (478)
....|+++|+||+|++++|+.|++.+.+|.. ..|.+ |+|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 139 ~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l 218 (405)
T 4b4t_J 139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAEL 218 (405)
T ss_dssp EECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHh
Confidence 3456999999999999999999999999833 33555 8999999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCC-chhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC
Q psy450 271 LNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQS-SGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349 (478)
Q Consensus 271 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 349 (478)
.++|.|++++.++.+|..|+..+||||||||+|.+++++..++.+ .....+++++|+.+||++....+++||+|||+|+
T Consensus 219 ~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd 298 (405)
T 4b4t_J 219 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLD 298 (405)
T ss_dssp SCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSS
T ss_pred hccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChh
Confidence 999999999999999999999999999999999999887654433 3355688999999999999889999999999999
Q ss_pred CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy450 350 LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITS 429 (478)
Q Consensus 350 ~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~ 429 (478)
.||++++||||||..|++++ |+.++|.+||+.+++++++..++++..+|..+ +||||+||.++|++|++.|+++.
T Consensus 299 ~LDpAllRpGRfD~~I~i~l-Pd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t-~G~SGADi~~l~~eA~~~Air~~--- 373 (405)
T 4b4t_J 299 ILDPALLRPGRIDRKIEFPP-PSVAARAEILRIHSRKMNLTRGINLRKVAEKM-NGCSGADVKGVCTEAGMYALRER--- 373 (405)
T ss_dssp SSCHHHHSTTSSCCEEECCC-CCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHC-CSCCHHHHHHHHHHHHHHHHHTT---
T ss_pred hCCHhHcCCCcCceEEEcCC-cCHHHHHHHHHHHhcCCCCCccCCHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHcC---
Confidence 99999999999999999998 79999999999999999999999999999998 89999999999999999999863
Q ss_pred CCCCCCCCccccHHHHHhchhccCCCcccccccccc
Q psy450 430 APQVKSAPVIVTMDDFLGACSLATAPDKFSQSVAPD 465 (478)
Q Consensus 430 ~~~~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~ 465 (478)
...||++||..| ++++.++..+.
T Consensus 374 -------~~~vt~~Df~~A------l~~v~~~~~~~ 396 (405)
T 4b4t_J 374 -------RIHVTQEDFELA------VGKVMNKNQET 396 (405)
T ss_dssp -------CSBCCHHHHHHH------HHHHHHHHTCC
T ss_pred -------CCCcCHHHHHHH------HHHHhCccccc
Confidence 557999999999 88887765443
No 3
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=2.3e-50 Score=440.33 Aligned_cols=418 Identities=36% Similarity=0.556 Sum_probs=333.5
Q ss_pred cchhhhhHHHHhhhhcCCCeEEEecccccccch----------hhHhhhccccccccccccchhhhccCCCcEEEEe---
Q psy450 28 RYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK----------YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL--- 94 (478)
Q Consensus 28 ~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r----------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via--- 94 (478)
...+++.+|+ .+....|+|+|+||+|.++..+ .++.+++.|++. .....+++|+
T Consensus 282 ~~~~l~~vf~-~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~------------~~~~~v~vI~atn 348 (806)
T 1ypw_A 282 SESNLRKAFE-EAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL------------KQRAHVIVMAATN 348 (806)
T ss_dssp HHHHHHHHHH-HHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSS------------CTTSCCEEEEECS
T ss_pred HHHHHHHHHH-HHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhh------------cccccEEEecccC
Confidence 3458999999 9999999999999999998754 567777778754 3445677777
Q ss_pred ----eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q psy450 95 ----IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLK 168 (478)
Q Consensus 95 ----ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~ 168 (478)
+|++++| ||++.+.++.|+.++|.+||+.+++.+ .+..+.++ ..++..++||+++++..++++++..+.++
T Consensus 349 ~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~--~l~~~~~l-~~la~~t~g~~g~dl~~l~~ea~~~a~r~ 425 (806)
T 1ypw_A 349 RPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM--KLADDVDL-EQVANETHGHVGADLAALCSEAALQAIRK 425 (806)
T ss_dssp CTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTS--CCCTTCCT-HHHHHSCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcC--CCcccchh-HHHHHhhcCcchHHHHHHHHHHHHHHHhh
Confidence 9999999 999999999999999999999999877 55566677 99999999999999999999999888654
Q ss_pred hc--------------CCCCCCCHHHHHHHHHHhhhhcccCCCCCCCCCCCcccccCcHHHHHHHHHHHHhhhhh-----
Q psy450 169 QG--------------INKRDLQKEDFQQIYDDLQSRYSDQLDAPSVPNVSWEDIGGLSKLKAEILSTFRGVNRT----- 229 (478)
Q Consensus 169 ~~--------------~~~~~it~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~----- 229 (478)
.. .....++.+|+..++....++..... ....|...|++++|++++|+.|.+.+.++...
T Consensus 426 ~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~-~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~ 504 (806)
T 1ypw_A 426 KMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRET-VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFL 504 (806)
T ss_dssp TTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCC-CCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTT
T ss_pred hccccchhhhccchhhhhhhhhhhhhhhccccccCchhhhhh-cccCccccccccccchhhhhhHHHHHHhhhhchHHHH
Confidence 21 12456788899999988877654432 45678999999999999999999988876332
Q ss_pred -CCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccC
Q psy450 230 -SGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAP 307 (478)
Q Consensus 230 -~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~ 307 (478)
.+.. +.++||+||||||||++|+++|+.++.+++.++++++.+.|.|.++..++.+|+.++...||||||||+|.+.+
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~ 584 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 584 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCC
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhh
Confidence 2323 67899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCC-CCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhc
Q psy450 308 RRGQED-QSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRK 386 (478)
Q Consensus 308 ~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~ 386 (478)
.+++.. ...+...+++++|+..|++.....+++||+|||+|+.+|++++|||||+..+++++ |+.++|..||+.++++
T Consensus 585 ~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~-p~~~~r~~Il~~~l~~ 663 (806)
T 1ypw_A 585 ARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL-PDEKSRVAILKANLRK 663 (806)
T ss_dssp TTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCC-CCCSHHHHHTTTTTSC
T ss_pred hccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCC-CCHHHHHHHHHHHhcc
Confidence 775432 22345678999999999998888899999999999999999999999999999997 6899999999999998
Q ss_pred CCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC---------------CCCCCccccHHHHHhchhc
Q psy450 387 FKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQ---------------VKSAPVIVTMDDFLGACSL 451 (478)
Q Consensus 387 ~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~---------------~~~~~~~it~~d~~~A~~~ 451 (478)
..+..++++..++..+ .||+|+||.++|++|+..|+++....... .......|+.+||.+|
T Consensus 664 ~~~~~~~~l~~la~~t-~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a--- 739 (806)
T 1ypw_A 664 SPVAKDVDLEFLAKMT-NGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEA--- 739 (806)
T ss_dssp C----CCCCSCSCGGG-SSSCCHHHHHHHHHHHHHHHSCC------------------------CCTTTTTTSSCCC---
T ss_pred CCCCcccCHHHHHHhc-cccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccCccCHHHHHHH---
Confidence 8888888999999887 89999999999999999999875432100 0112346999999999
Q ss_pred cCCCccccccccccccccc
Q psy450 452 ATAPDKFSQSVAPDNYSLS 470 (478)
Q Consensus 452 ~~~l~~~~ps~~~~~~~~~ 470 (478)
+++++||++++++..+
T Consensus 740 ---~~~~~~svs~~~~~~y 755 (806)
T 1ypw_A 740 ---MRFARRSVSDNDIRKY 755 (806)
T ss_dssp ---CCC-------------
T ss_pred ---HHhCCCCCCHHHHHHH
Confidence 9999999998876554
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-47 Score=379.71 Aligned_cols=251 Identities=36% Similarity=0.604 Sum_probs=229.7
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhhh------hhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGVN------RTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL 271 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~------~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~ 271 (478)
...|+++|+||+|++++|+.|.+.+.+|. ...|.+ |+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 34689999999999999999999999874 334555 89999999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCC-CchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC
Q psy450 272 NKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQ-SSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDL 350 (478)
Q Consensus 272 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 350 (478)
++|.|++++.++.+|..|+..+||||||||+|.++++|..++. ......+.+++|+.++|++....+++||+|||+|+.
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~ 333 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET 333 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTT
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhh
Confidence 9999999999999999999999999999999999998865433 233556888999999999988889999999999999
Q ss_pred CCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy450 351 LDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSA 430 (478)
Q Consensus 351 ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~ 430 (478)
||++++||||||..|++++ |+.++|.+||+.+++++++..++++..+|..+ +||||+||.++|++|++.|+++.
T Consensus 334 LDpALlRpGRfD~~I~v~l-Pd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T-~GfSGADI~~l~~eA~~~Air~~---- 407 (437)
T 4b4t_I 334 LDPALIRPGRIDRKILFEN-PDLSTKKKILGIHTSKMNLSEDVNLETLVTTK-DDLSGADIQAMCTEAGLLALRER---- 407 (437)
T ss_dssp CCTTSSCTTTEEEEECCCC-CCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHC-CSCCHHHHHHHHHHHHHHHHHTT----
T ss_pred cCHHHhcCCceeEEEEcCC-cCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHcC----
Confidence 9999999999999999998 79999999999999999999999999999987 89999999999999999999874
Q ss_pred CCCCCCCccccHHHHHhchhccCCCcccccccccccc
Q psy450 431 PQVKSAPVIVTMDDFLGACSLATAPDKFSQSVAPDNY 467 (478)
Q Consensus 431 ~~~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~~~ 467 (478)
...||++||..| ++++.|+.+++++
T Consensus 408 ------~~~It~eDf~~A------l~rv~~~~~~e~l 432 (437)
T 4b4t_I 408 ------RMQVTAEDFKQA------KERVMKNKVEENL 432 (437)
T ss_dssp ------CSCBCHHHHHHH------HHHHHHHHCCCSS
T ss_pred ------CCccCHHHHHHH------HHHHhCCCChhhH
Confidence 457999999999 9999999877765
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-46 Score=378.97 Aligned_cols=248 Identities=33% Similarity=0.575 Sum_probs=227.1
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhhhh------hCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGVNR------TSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL 271 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~------~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~ 271 (478)
...|+++|++|+|++++|+.|.+.+.+|.. ..|.+ |+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 456899999999999999999999988843 34655 89999999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCC-chhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC
Q psy450 272 NKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQS-SGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDL 350 (478)
Q Consensus 272 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 350 (478)
++|.|.+++.++.+|..|+..+||||||||+|.++++|..+..+ .....+.+++|+..|+++....+++||+|||+|+.
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~ 332 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh
Confidence 99999999999999999999999999999999999888654332 23456788999999999988889999999999999
Q ss_pred CCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy450 351 LDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSA 430 (478)
Q Consensus 351 ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~ 430 (478)
||++++||||||..|++++ |+.++|.+||+.+++++.+..++++..+|..+ .||||+||.++|++|++.|+++.
T Consensus 333 LD~AllRpGRfD~~I~i~l-Pd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t-~G~sGADi~~l~~eA~~~a~r~~---- 406 (434)
T 4b4t_M 333 LDPALLRSGRLDRKIEFPL-PSEDSRAQILQIHSRKMTTDDDINWQELARST-DEFNGAQLKAVTVEAGMIALRNG---- 406 (434)
T ss_dssp CCTTTCSTTSEEEEEECCC-CCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHC-SSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred cCHhHhcCCceeEEEEeCC-cCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHcC----
Confidence 9999999999999999998 79999999999999999999999999999997 89999999999999999999874
Q ss_pred CCCCCCCccccHHHHHhchhccCCCccccccccc
Q psy450 431 PQVKSAPVIVTMDDFLGACSLATAPDKFSQSVAP 464 (478)
Q Consensus 431 ~~~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~ 464 (478)
...||++||.+| +++++|+.+.
T Consensus 407 ------~~~i~~~Df~~A------l~~v~~~~~~ 428 (434)
T 4b4t_M 407 ------QSSVKHEDFVEG------ISEVQARKSK 428 (434)
T ss_dssp ------CSSBCHHHHHHH------HHSCSSSCCC
T ss_pred ------CCCcCHHHHHHH------HHHHhCCCCc
Confidence 457999999999 9999998764
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-46 Score=374.15 Aligned_cols=247 Identities=35% Similarity=0.556 Sum_probs=224.9
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHhhhh------hCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh
Q psy450 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNR------TSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN 272 (478)
Q Consensus 200 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~------~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~ 272 (478)
..|+++|+||+|++++|+.|.+.+.+|.. ..|.+ |+|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 35899999999999999999999999743 34555 899999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCC-CchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCC
Q psy450 273 KYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQ-SSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLL 351 (478)
Q Consensus 273 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 351 (478)
+|.|+++..++.+|..|+...||||||||+|.++++|.+.+. ......+++++||.+||++....+++||+|||+|+.|
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 999999999999999999999999999999999988855443 3345567889999999999888899999999999999
Q ss_pred CccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q psy450 352 DPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAP 431 (478)
Q Consensus 352 d~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~ 431 (478)
|++++||||||..|++++ |+.++|.+||+.+++++....++++..+|..+ +||||+||.++|++|++.|+++.
T Consensus 334 DpAllRpGRfD~~I~i~l-Pd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t-~G~sGADi~~l~~eA~~~air~~----- 406 (437)
T 4b4t_L 334 DPALLRPGRLDRKVEIPL-PNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMS-DGFNGADIRNCATEAGFFAIRDD----- 406 (437)
T ss_dssp CTTTTSTTSEEEEECCCC-CCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTC-CSCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred CHHHhCCCccceeeecCC-cCHHHHHHHHHHHhcCCCCCcccCHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 999999999999999998 79999999999999999999999999999987 89999999999999999999863
Q ss_pred CCCCCCccccHHHHHhchhccCCCccccccccc
Q psy450 432 QVKSAPVIVTMDDFLGACSLATAPDKFSQSVAP 464 (478)
Q Consensus 432 ~~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~ 464 (478)
...||.+||..| ++++.|+...
T Consensus 407 -----~~~i~~~d~~~A------l~~v~~~~k~ 428 (437)
T 4b4t_L 407 -----RDHINPDDLMKA------VRKVAEVKKL 428 (437)
T ss_dssp -----CSSBCHHHHHHH------HHHHHHTCC-
T ss_pred -----CCCCCHHHHHHH------HHHHHhccCc
Confidence 447999999999 8888887543
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-46 Score=371.77 Aligned_cols=246 Identities=32% Similarity=0.572 Sum_probs=224.5
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHhhh------hhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh
Q psy450 200 SVPNVSWEDIGGLSKLKAEILSTFRGVN------RTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN 272 (478)
Q Consensus 200 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~------~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~ 272 (478)
..|+++|+||+|++++|+.|++.+.+|. ...|.+ |+|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 5689999999999999999999998873 334555 999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCC-chhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCC
Q psy450 273 KYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQS-SGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLL 351 (478)
Q Consensus 273 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 351 (478)
+|+|++++.++.+|..|+..+||||||||+|.++++|+..+.+ .....+.+++++.+|++.....+++||+|||+|+.|
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~L 361 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL 361 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSB
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccC
Confidence 9999999999999999999999999999999999888654332 334567889999999999888999999999999999
Q ss_pred CccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q psy450 352 DPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAP 431 (478)
Q Consensus 352 d~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~ 431 (478)
|++++|||||+..|++++ |+.++|.+||+.+++++.+..++++..||+.+ .||||+||.++|++|++.|+++.
T Consensus 362 DpALlRpGRFD~~I~i~l-Pd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T-~GfSGADI~~l~~eAa~~Air~~----- 434 (467)
T 4b4t_H 362 DPALLRPGRIDRKVEFSL-PDLEGRANIFRIHSKSMSVERGIRWELISRLC-PNSTGAELRSVCTEAGMFAIRAR----- 434 (467)
T ss_dssp CHHHHSTTTCCEEECCCC-CCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHC-CSCCHHHHHHHHHHHHHHHHHHT-----
T ss_pred ChhhhccccccEEEEeCC-cCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 999999999999999998 79999999999999999999999999999988 89999999999999999999874
Q ss_pred CCCCCCccccHHHHHhchhccCCCcccccccc
Q psy450 432 QVKSAPVIVTMDDFLGACSLATAPDKFSQSVA 463 (478)
Q Consensus 432 ~~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~ 463 (478)
...||++||..| ++++.++..
T Consensus 435 -----~~~it~~Df~~A------l~kV~~g~~ 455 (467)
T 4b4t_H 435 -----RKVATEKDFLKA------VDKVISGYK 455 (467)
T ss_dssp -----CSSBCHHHHHHH------HHHHHHHHC
T ss_pred -----CCccCHHHHHHH------HHHHhcCcc
Confidence 457999999999 888877654
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-46 Score=372.90 Aligned_cols=254 Identities=36% Similarity=0.597 Sum_probs=227.4
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhhhh------hCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGVNR------TSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL 271 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~------~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~ 271 (478)
...|+++|+|++|++++|+.|.+.+.+|.. ..|.+ |+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 346889999999999999999999998743 34655 89999999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCC-CchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC
Q psy450 272 NKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQ-SSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDL 350 (478)
Q Consensus 272 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 350 (478)
++|.|+++..++.+|..|+..+||||||||+|.+++.+..... ......+++++|+.+||++....+++||+|||+|+.
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~ 323 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADT 323 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSS
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 9999999999999999999999999999999999988754433 334567899999999999988899999999999999
Q ss_pred CCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy450 351 LDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSA 430 (478)
Q Consensus 351 ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~ 430 (478)
+|++++||||||..|++|.+|+.++|..||+.+++++++..++++..+|..+ +||||+||.++|++|++.|+++.
T Consensus 324 LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t-~G~sgadi~~l~~eA~~~a~r~~---- 398 (428)
T 4b4t_K 324 LDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRN-DSLSGAVIAAIMQEAGLRAVRKN---- 398 (428)
T ss_dssp CCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHTT----
T ss_pred cChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHCC----
Confidence 9999999999999999974479999999999999999999999999999998 89999999999999999999874
Q ss_pred CCCCCCCccccHHHHHhchhccCCCcc-cccccccccccc
Q psy450 431 PQVKSAPVIVTMDDFLGACSLATAPDK-FSQSVAPDNYSL 469 (478)
Q Consensus 431 ~~~~~~~~~it~~d~~~A~~~~~~l~~-~~ps~~~~~~~~ 469 (478)
...||++||.+| +.+ ++++.+.+++.+
T Consensus 399 ------~~~i~~~d~~~A------~~~~~~~~~~~~~~d~ 426 (428)
T 4b4t_K 399 ------RYVILQSDLEEA------YATQVKTDNTVDKFDF 426 (428)
T ss_dssp ------CSSBCHHHHHHH------HHHHSCSCCCSSCCCS
T ss_pred ------CCCCCHHHHHHH------HHHhhCccCCccHhhh
Confidence 457999999999 765 466666665543
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.3e-39 Score=349.52 Aligned_cols=253 Identities=40% Similarity=0.645 Sum_probs=224.8
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhhhh------hCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGVNR------TSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL 271 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~------~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~ 271 (478)
...|.++|++|+|++++++.|++.+.+|.. ..|.. |+|+|||||||||||++|+++|++++.+++.++++++.
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 346789999999999999999999988743 33444 89999999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCC
Q psy450 272 NKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLL 351 (478)
Q Consensus 272 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 351 (478)
+++.|+++..++.+|..|+...||||||||+|.+++++++.. ....++++++|+..|+++....+++||++||+|+.+
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~--~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC--CTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC--ChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 999999999999999999999999999999999999886543 334578999999999999888899999999999999
Q ss_pred CccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q psy450 352 DPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAP 431 (478)
Q Consensus 352 d~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~ 431 (478)
|++++|+|||++.|++++ |+.++|.+||+.++++..+..++++..+|.++ .||+|+||.++|++|+..|++|......
T Consensus 354 D~ALrR~GRFd~~I~i~~-Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T-~GfsgaDL~~Lv~eA~~~A~~r~~~~i~ 431 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGI-PDATGRLEILQIHTKNMKLADDVDLEQVANET-HGHVGADLAALCSEAALQAIRKKMDLID 431 (806)
T ss_dssp CTTTTSTTSSCEEEECCC-CCHHHHHHHHHHTCSSSEECTTCCHHHHHHHC-CSCCHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CHHHhCCcccceEEecCC-CCHHHHHHHHHHHhcCCCCCcccCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999998 79999999999999999999999999999998 8999999999999999999999764321
Q ss_pred CC-------CCCCccccHHHHHhchhccCCCcccccc
Q psy450 432 QV-------KSAPVIVTMDDFLGACSLATAPDKFSQS 461 (478)
Q Consensus 432 ~~-------~~~~~~it~~d~~~A~~~~~~l~~~~ps 461 (478)
.. ......|+++||..| ++.++|+
T Consensus 432 ~~~~~~~~e~~~~~~v~~~Df~~A------l~~~~ps 462 (806)
T 3cf2_A 432 LEDETIDAEVMNSLAVTMDDFRWA------LSQSNPS 462 (806)
T ss_dssp GTCCCCSHHHHHHCEECTTHHHHH------HSSSSCC
T ss_pred ccccccchhhhccceeeHHHHHHH------HHhCCCc
Confidence 10 012456899999999 7666665
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.8e-38 Score=302.43 Aligned_cols=259 Identities=44% Similarity=0.763 Sum_probs=203.4
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHhhhh------hCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh
Q psy450 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNR------TSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN 272 (478)
Q Consensus 200 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~------~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~ 272 (478)
..|+++|++++|++++|+.|.+.+.++.. ..+.. ++|++|+||||||||++++++|..++.+++.+++.++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 46889999999999999999998877632 33444 788999999999999999999999999999999999988
Q ss_pred hhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCC
Q psy450 273 KYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLD 352 (478)
Q Consensus 273 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 352 (478)
.+.+..+..++.+|+.+....|+++++||+|.+.+.++.. ......++.++++..|++...+..++++++||+|+.+|
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~--~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR--ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 160 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSC
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC--cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCC
Confidence 8888899999999999988899999999999988665322 11223467889999999988888899999999999999
Q ss_pred ccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhc---CCCCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy450 353 PAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRK---FKLSDDVSLDSLVHHF-PSQMSGADIYSICSNAWTRAIRRIIT 428 (478)
Q Consensus 353 ~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~---~~~~~~~~~~~la~~~-~~~~sg~di~~l~~~a~~~a~~r~~~ 428 (478)
++++|||||+..|++++ |+.++|.+||+.++++ .....++++..++..+ ++||||+||.++|++|+..|+++...
T Consensus 161 ~al~r~gRfd~~i~~~~-P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGL-PPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239 (274)
T ss_dssp HHHHSTTSSCEEEECCS-CCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhcCcccCCeEEEeCC-cCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998 7999999999998854 3456788999999864 36999999999999999999988653
Q ss_pred cCCC-CCCCCccccHHHHHhchhccCCCcccccccccccc
Q psy450 429 SAPQ-VKSAPVIVTMDDFLGACSLATAPDKFSQSVAPDNY 467 (478)
Q Consensus 429 ~~~~-~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~~~ 467 (478)
.... .......||++||.+| +++++||++.++.
T Consensus 240 ~~~~~~~~~~~~i~~~df~~a------l~~~~ps~~~~~~ 273 (274)
T 2x8a_A 240 RQKSGNEKGELKVSHKHFEEA------FKKVRSSISKKDQ 273 (274)
T ss_dssp ----------CCBCHHHHHHH------HTTCCCCC-----
T ss_pred hccccccccCCeecHHHHHHH------HHHhcCCCChhhc
Confidence 3211 1123457999999999 9999999988764
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=303.97 Aligned_cols=258 Identities=31% Similarity=0.526 Sum_probs=221.9
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHhhhhhC------CCCCceEEEeCCCCChHHHHHHHHHHHh-CCcEEEEechhhhh
Q psy450 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNRTS------GLKRSGLLLYGPPGTGKTLIAKAVATEC-RMNFLAVKGPELLN 272 (478)
Q Consensus 200 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~------~~~~~~iLl~Gp~GtGKT~la~~la~~~-~~~~~~v~~~~l~~ 272 (478)
..|+.+|++|+|++.+|+.|.+.+.++...+ ..+++++||+||||||||++|+++|+++ +.+++.++++++.+
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 4688999999999999999999998874432 2236899999999999999999999999 89999999999999
Q ss_pred hhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC-CCCeEEEEEcCCCCCC
Q psy450 273 KYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT-SQDVFILGATNRVDLL 351 (478)
Q Consensus 273 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~v~vI~ttn~~~~l 351 (478)
.+.|.++..++.+|..++...|+||||||+|.+.+.++.. ......++.++++..++++.. ..+++||++||+|+.+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~l 162 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVL 162 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC--CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc--cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccC
Confidence 9999999999999999999999999999999999877543 334557889999999998753 5689999999999999
Q ss_pred CccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy450 352 DPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLS-DDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSA 430 (478)
Q Consensus 352 d~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~ 430 (478)
|++++| ||+..+++++ |+.++|..|++.++++.+.. .+.++..++..+ .||+|+||..+|++|++.|+++.....
T Consensus 163 d~al~r--Rf~~~i~i~~-P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t-~G~sgadl~~l~~~A~~~a~r~~~~~~ 238 (322)
T 1xwi_A 163 DSAIRR--RFEKRIYIPL-PEPHARAAMFKLHLGTTQNSLTEADFRELGRKT-DGYSGADISIIVRDALMQPVRKVQSAT 238 (322)
T ss_dssp CHHHHH--TCCEEEECCC-CCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTC-TTCCHHHHHHHHHHHHTHHHHHHHHCS
T ss_pred CHHHHh--hcCeEEEeCC-cCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999 9999999997 69999999999999877654 456788999887 899999999999999999999986431
Q ss_pred CC------------------------------------C---CCCCccccHHHHHhchhccCCCcccccccccccccc
Q psy450 431 PQ------------------------------------V---KSAPVIVTMDDFLGACSLATAPDKFSQSVAPDNYSL 469 (478)
Q Consensus 431 ~~------------------------------------~---~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~~~~~ 469 (478)
.. . .....+||++||..| +++++||++++++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a------l~~~~ps~~~~~~~~ 310 (322)
T 1xwi_A 239 HFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRS------LSNTKPTVNEHDLLK 310 (322)
T ss_dssp EEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHH------HHTCCCSCCHHHHHH
T ss_pred hhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHH------HHhCCCCCCHHHHHH
Confidence 00 0 001247999999999 999999999987654
No 12
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=5.3e-37 Score=299.22 Aligned_cols=263 Identities=47% Similarity=0.773 Sum_probs=224.8
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhhhh------hCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGVNR------TSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL 271 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~------~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~ 271 (478)
...|..+|++++|++.+++.|.+.+.++.. ..+.. +.++||+||||||||++|+++|++++.+++.++++++.
T Consensus 7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 86 (301)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHH
Confidence 457889999999999999999999988632 22434 78899999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCC-CCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC
Q psy450 272 NKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQED-QSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDL 350 (478)
Q Consensus 272 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 350 (478)
+.+.|.++..++.+|..+....|++|||||+|.+.+.++... ...+...+++++++..++++....+++||+|||+++.
T Consensus 87 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 87 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 166 (301)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGG
T ss_pred hhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccc
Confidence 999999999999999999999999999999999986653221 1223345788999999998877788999999999999
Q ss_pred CCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy450 351 LDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSA 430 (478)
Q Consensus 351 ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~ 430 (478)
+|++++|+|||+..+++++ |+.++|.+|++.++++.++..++++..++..+ .||+|+||.++|++|+..|+++.....
T Consensus 167 ld~al~r~gRf~~~i~i~~-p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~-~g~sg~dl~~l~~~a~~~a~~~~~~~~ 244 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPL-PDEKSRVAILKANLRKSPVAKDVDLEFLAKMT-NGFSGADLTEICQRACKLAIRESIESE 244 (301)
T ss_dssp SCGGGGSTTSSCEEEECCC-CCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTC-SSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHhcCCccceEEecCC-cCHHHHHHHHHHHHccCCCCccchHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999997 68999999999999988888888999999876 899999999999999999998875321
Q ss_pred CC---------C------CCCCccccHHHHHhchhccCCCcccccccccccccc
Q psy450 431 PQ---------V------KSAPVIVTMDDFLGACSLATAPDKFSQSVAPDNYSL 469 (478)
Q Consensus 431 ~~---------~------~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~~~~~ 469 (478)
.. . ......|+.+||.+| +++++||++++++..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a------l~~~~~s~~~~~~~~ 292 (301)
T 3cf0_A 245 IRRERERQTNPSAMEVEEDDPVPEIRRDHFEEA------MRFARRSVSDNDIRK 292 (301)
T ss_dssp C--------------------CCCBCHHHHHHH------HTTCCCSSCHHHHHH
T ss_pred hhhhhhcccccccccccccccCCccCHHHHHHH------HHHcCCCCCHHHHHH
Confidence 10 0 011247999999999 999999999877653
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=3.9e-36 Score=295.96 Aligned_cols=258 Identities=33% Similarity=0.519 Sum_probs=219.0
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhhhhhC------CCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGVNRTS------GLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN 272 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~------~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~ 272 (478)
...|+.+|++++|++.+++.|.+.+.++...+ ..+++++||+||||||||++|+++|++++.+++.++++++.+
T Consensus 10 ~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 10 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred ecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 45788999999999999999999998774322 233789999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC-CCCCeEEEEEcCCCCCC
Q psy450 273 KYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH-TSQDVFILGATNRVDLL 351 (478)
Q Consensus 273 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~v~vI~ttn~~~~l 351 (478)
.+.|.++..++.+|..++...|+||||||+|.+.++++.. ......++.+.++..+++.. ...+++||+|||+|+.+
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~l 167 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQL 167 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGS
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC--cchHHHHHHHHHHHHhccccccCCceEEEEecCChhhC
Confidence 9999999999999999999999999999999999876433 22344688899999999874 45689999999999999
Q ss_pred CccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy450 352 DPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLS-DDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSA 430 (478)
Q Consensus 352 d~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~ 430 (478)
|+++++ ||+..+++++ |+.++|..|++.++++.... .+.++..++..+ .||+|+||.++|++|+..|+++.....
T Consensus 168 d~al~~--Rf~~~i~~~~-p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t-~g~sg~di~~l~~~a~~~a~r~~~~~~ 243 (322)
T 3eie_A 168 DSAIRR--RFERRIYIPL-PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMT-EGYSGSDIAVVVKDALMQPIRKIQSAT 243 (322)
T ss_dssp CHHHHH--HCCEEEECCC-CCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTT-TTCCHHHHHHHHHHHTTHHHHHHHHCE
T ss_pred CHHHHc--ccCeEEEeCC-CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999 9999999998 79999999999999877644 456688899887 899999999999999999999986531
Q ss_pred CC---------------------------------CCCCCccccHHHHHhchhccCCCccccccccccccc
Q psy450 431 PQ---------------------------------VKSAPVIVTMDDFLGACSLATAPDKFSQSVAPDNYS 468 (478)
Q Consensus 431 ~~---------------------------------~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~~~~ 468 (478)
.. .......||++||.+| +++++||++.+++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~a------l~~~~ps~~~~~~~ 308 (322)
T 3eie_A 244 HFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKA------IKSTRPTVNEDDLL 308 (322)
T ss_dssp EEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHH------HHHSCCSSCTTHHH
T ss_pred hhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHH------HHhcCCCCCHHHHH
Confidence 00 0012356999999999 99999999987654
No 14
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=2e-35 Score=294.31 Aligned_cols=260 Identities=33% Similarity=0.511 Sum_probs=211.5
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhhhhhC------CCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGVNRTS------GLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL 271 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~------~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~ 271 (478)
....|..+|++|+|++.+++.|.+.+.++...+ ..+++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 42 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 42 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp -----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 345688999999999999999999988763321 23368899999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC-CCCeEEEEEcCCCCC
Q psy450 272 NKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT-SQDVFILGATNRVDL 350 (478)
Q Consensus 272 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~v~vI~ttn~~~~ 350 (478)
+.+.|.++..++.+|..++...|+||||||+|.+.+.++.. ......++.++|+..++++.. ..+++||++||+|+.
T Consensus 122 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ 199 (355)
T 2qp9_X 122 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 199 (355)
T ss_dssp SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGG
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC--cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCccc
Confidence 99999999999999999999999999999999999876433 334557888999999987754 467999999999999
Q ss_pred CCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy450 351 LDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLS-DDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITS 429 (478)
Q Consensus 351 ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~ 429 (478)
++++++| ||+..+++++ |+.++|..|++.++++.+.. .+.++..|+..+ .||+|+||.++|++|+..|+++....
T Consensus 200 ld~al~r--Rf~~~i~i~~-P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t-~G~sg~dl~~l~~~A~~~a~~~~~~~ 275 (355)
T 2qp9_X 200 LDSAIRR--RFERRIYIPL-PDLAARTTMFEINVGDTPSVLTKEDYRTLGAMT-EGYSGSDIAVVVKDALMQPIRKIQSA 275 (355)
T ss_dssp SCHHHHH--TCCEEEECCC-CCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHc--ccCEEEEeCC-cCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999 9999999997 79999999999999877643 456788999987 89999999999999999999987542
Q ss_pred CCC---------------------------------CCCCCccccHHHHHhchhccCCCcccccccccccccc
Q psy450 430 APQ---------------------------------VKSAPVIVTMDDFLGACSLATAPDKFSQSVAPDNYSL 469 (478)
Q Consensus 430 ~~~---------------------------------~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~~~~~ 469 (478)
... ......+||++||..| +++++||++++++..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~A------l~~~~ps~~~~~~~~ 342 (355)
T 2qp9_X 276 THFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKA------IKSTRPTVNEDDLLK 342 (355)
T ss_dssp SEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHH------HHHSCCSSCHHHHHH
T ss_pred hhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHH------HHHcCCCCCHHHHHH
Confidence 100 0012346999999999 999999999887643
No 15
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=4.4e-35 Score=300.15 Aligned_cols=260 Identities=31% Similarity=0.516 Sum_probs=213.6
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHhhhhhCC------CCCceEEEeCCCCChHHHHHHHHHHHh-CCcEEEEechhh
Q psy450 198 APSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSG------LKRSGLLLYGPPGTGKTLIAKAVATEC-RMNFLAVKGPEL 270 (478)
Q Consensus 198 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~------~~~~~iLl~Gp~GtGKT~la~~la~~~-~~~~~~v~~~~l 270 (478)
....|..+|++++|++.+++.|.+.+.++...+. .+++++||+||||||||++|+++|+++ +.+|+.++++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l 204 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 204 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC--
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHH
Confidence 3457889999999999999999999987743322 236899999999999999999999999 899999999999
Q ss_pred hhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC-CCCeEEEEEcCCCC
Q psy450 271 LNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT-SQDVFILGATNRVD 349 (478)
Q Consensus 271 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~v~vI~ttn~~~ 349 (478)
.+.+.|.++..++.+|..++...|+||||||+|.+.+.+... ......++.++|+..++++.. ..+++||+|||+|+
T Consensus 205 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~ 282 (444)
T 2zan_A 205 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 282 (444)
T ss_dssp -------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC--CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGG
T ss_pred HhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc--cccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCcc
Confidence 999999999999999999999999999999999998876543 334457889999999998753 56899999999999
Q ss_pred CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy450 350 LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLS-DDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIIT 428 (478)
Q Consensus 350 ~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~ 428 (478)
.++++++| ||+..+++++ |+.++|..|++.++++.+.. .+.++..|+..+ .||+|+||..+|++|+..|+++...
T Consensus 283 ~ld~al~r--Rf~~~i~i~~-P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t-~G~sgadl~~l~~~a~~~a~r~~~~ 358 (444)
T 2zan_A 283 VLDSAIRR--RFEKRIYIPL-PEAHARAAMFRLHLGSTQNSLTEADFQELGRKT-DGYSGADISIIVRDALMQPVRKVQS 358 (444)
T ss_dssp GSCHHHHT--TCCEEEECCC-CCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHT-TTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred ccCHHHHh--hcceEEEeCC-cCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999 9999999997 69999999999999876643 456788999987 8999999999999999999999864
Q ss_pred cCC------------------------------------CC---CCCCccccHHHHHhchhccCCCcccccccccccccc
Q psy450 429 SAP------------------------------------QV---KSAPVIVTMDDFLGACSLATAPDKFSQSVAPDNYSL 469 (478)
Q Consensus 429 ~~~------------------------------------~~---~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~~~~~ 469 (478)
... .. .....+||++||..| +++++||++++++..
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a------~~~~~ps~~~~~~~~ 432 (444)
T 2zan_A 359 ATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRS------LSSTKPTVNEQDLLK 432 (444)
T ss_dssp CSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHH------HHTCCCSCCHHHHHH
T ss_pred hhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHH------HHhCCCCCCHHHHHH
Confidence 310 00 001347999999999 999999999987653
No 16
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=7.5e-34 Score=290.30 Aligned_cols=243 Identities=34% Similarity=0.601 Sum_probs=207.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhh-----hhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhh
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVN-----RTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKY 274 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~-----~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~ 274 (478)
.+..+|++++|++++++.+.+.+.... ...+.. |+++||+||||||||++|++++++++.+|+.++++++...+
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 577899999999999999999887642 223434 78999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCC-CCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCc
Q psy450 275 IGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQED-QSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDP 353 (478)
Q Consensus 275 ~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~ 353 (478)
.|.....++.+|..+....||||||||+|.+.++++... .......+.+++|+..++++....+++||++||+|+.+|+
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~ 169 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDP 169 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCG
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhch
Confidence 999999999999999999999999999999998764321 1122335788999999998777778999999999999999
Q ss_pred cccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy450 354 AILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQV 433 (478)
Q Consensus 354 ~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~ 433 (478)
+++|+|||+..+.+++ |+.++|.+|++.++++.++..++++..++..+ .||+|+||.++|++|+..|.++.
T Consensus 170 allR~gRFd~~i~i~~-Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t-~G~sgadL~~lv~~Aal~A~~~~------- 240 (476)
T 2ce7_A 170 ALLRPGRFDKKIVVDP-PDMLGRKKILEIHTRNKPLAEDVNLEIIAKRT-PGFVGADLENLVNEAALLAAREG------- 240 (476)
T ss_dssp GGGSTTSSCEEEECCC-CCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHTT-------
T ss_pred hhcccCcceeEeecCC-CCHHHHHHHHHHHHHhCCCcchhhHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999997 79999999999999998888888999999887 89999999999999998887642
Q ss_pred CCCCccccHHHHHhchhccCCCcccccc
Q psy450 434 KSAPVIVTMDDFLGACSLATAPDKFSQS 461 (478)
Q Consensus 434 ~~~~~~it~~d~~~A~~~~~~l~~~~ps 461 (478)
...|+.+||..| +.++.++
T Consensus 241 ---~~~I~~~dl~~a------l~~v~~~ 259 (476)
T 2ce7_A 241 ---RDKITMKDFEEA------IDRVIAG 259 (476)
T ss_dssp ---CSSBCHHHHHHH------HHHHC--
T ss_pred ---CCeecHHHHHHH------HHHHhcC
Confidence 457999999999 7766554
No 17
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=1.5e-32 Score=261.70 Aligned_cols=242 Identities=33% Similarity=0.603 Sum_probs=206.9
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHhhhh-----hCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhh
Q psy450 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNR-----TSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK 273 (478)
Q Consensus 200 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~-----~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~ 273 (478)
..+..+|++++|++.+++.+.+.+..... ..+.. +.+++|+||||||||++|+++++.++.+++.+++.++...
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 46778999999999999999988766421 11222 7789999999999999999999999999999999999888
Q ss_pred hhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCC-CCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCC
Q psy450 274 YIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQED-QSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLD 352 (478)
Q Consensus 274 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 352 (478)
+.|.....++.+|..+....|+++||||+|.+.+.+.... .......+.++.++..+++.....+++||++||+++.++
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~ 164 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCC
Confidence 8899999999999999988899999999999987654321 112233467888999999887778899999999999999
Q ss_pred ccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy450 353 PAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQ 432 (478)
Q Consensus 353 ~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~ 432 (478)
+++++++||+..+++++ |+.++|.+|++.++++.++..+.++..++..+ .||+++||.++|+.|...|.++.
T Consensus 165 ~~l~r~~rf~~~i~i~~-P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~-~G~~~~dl~~l~~~a~~~a~~~~------ 236 (257)
T 1lv7_A 165 PALLRPGRFDRQVVVGL-PDVRGREQILKVHMRRVPLAPDIDAAIIARGT-PGFSGADLANLVNEAALFAARGN------ 236 (257)
T ss_dssp GGGGSTTSSCEEEECCC-CCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHcCCCcCCeEEEeCC-CCHHHHHHHHHHHHhcCCCCccccHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhC------
Confidence 99999999999999997 68999999999999988888888888888887 79999999999999998887753
Q ss_pred CCCCCccccHHHHHhchhccCCCcccc
Q psy450 433 VKSAPVIVTMDDFLGACSLATAPDKFS 459 (478)
Q Consensus 433 ~~~~~~~it~~d~~~A~~~~~~l~~~~ 459 (478)
...||.+||.+| ++++.
T Consensus 237 ----~~~i~~~~~~~a------~~~~~ 253 (257)
T 1lv7_A 237 ----KRVVSMVEFEKA------KDKIM 253 (257)
T ss_dssp ----CSSBCHHHHHHH------HHHHT
T ss_pred ----CCcccHHHHHHH------HHHHh
Confidence 457999999999 66554
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=7.5e-33 Score=285.30 Aligned_cols=250 Identities=40% Similarity=0.650 Sum_probs=216.7
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhhhh------hCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhh
Q psy450 202 PNVSWEDIGGLSKLKAEILSTFRGVNR------TSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKY 274 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~~~~~~------~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~ 274 (478)
+..+|++++|++.+++.|.+.+..+.. ..+.. +.++||+||||||||++|++++++++.+|+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 456799999999999999999887632 22333 78999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCcc
Q psy450 275 IGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPA 354 (478)
Q Consensus 275 ~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~ 354 (478)
.|.....++.+|..+....|++|||||+|.+.++++.. ......++++.|+..+++.....+++||+|||+++.++++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~--~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~a 356 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC--CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc--cchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHH
Confidence 99999999999999999999999999999999876432 3445568899999999988778899999999999999999
Q ss_pred ccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy450 355 ILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQVK 434 (478)
Q Consensus 355 l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~~ 434 (478)
++++|||+..+++++ |+.++|.+||+.+++...+..+.++..++..+ .||+++||..+|++|+..|+++.........
T Consensus 357 l~r~gRf~~~i~i~~-P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t-~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~ 434 (489)
T 3hu3_A 357 LRRFGRFDREVDIGI-PDATGRLEILQIHTKNMKLADDVDLEQVANET-HGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (489)
T ss_dssp GGSTTSSCEEEECCC-CCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHTTTTTCCTTC
T ss_pred HhCCCcCceEEEeCC-CCHHHHHHHHHHHHhcCCCcchhhHHHHHHHc-cCCcHHHHHHHHHHHHHHHHHhccccccccc
Confidence 999999999999997 69999999999999999988888999999987 8999999999999999999988654221111
Q ss_pred -------CCCccccHHHHHhchhccCCCcccccc
Q psy450 435 -------SAPVIVTMDDFLGACSLATAPDKFSQS 461 (478)
Q Consensus 435 -------~~~~~it~~d~~~A~~~~~~l~~~~ps 461 (478)
.....||++||..| +++++||
T Consensus 435 ~~~~~~~~~~~~vt~edf~~A------l~~~~ps 462 (489)
T 3hu3_A 435 ETIDAEVMNSLAVTMDDFRWA------LSQSNPS 462 (489)
T ss_dssp SSCCHHHHHHCCBCHHHHHHH------HTSHHHH
T ss_pred cccchhhcccCcCCHHHHHHH------HHhCCch
Confidence 12346999999999 7766654
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.1e-32 Score=263.44 Aligned_cols=244 Identities=44% Similarity=0.703 Sum_probs=212.6
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhhhh------hCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGVNR------TSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL 271 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~------~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~ 271 (478)
...|+.+|++++|++.+++.|.+.+..+.. ..+.. +.++||+||||||||++|+++|+.++.+++.+++.++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 456788999999999999999998877632 22333 78899999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCC-chhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC
Q psy450 272 NKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQS-SGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDL 350 (478)
Q Consensus 272 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 350 (478)
..+.|.....+..+|..+....|+||||||+|.+.+++.+.... .......+..++..+++.....+++||+|||.++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 168 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh
Confidence 99999999999999999999999999999999998776443222 23345677888888888777778999999999999
Q ss_pred CCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy450 351 LDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSA 430 (478)
Q Consensus 351 ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~ 430 (478)
+++++++++||+..+.++. |+.++|.+|++.+++...+..+.++..++..+ .|++++++..+|+.|...|+.+.
T Consensus 169 l~~~l~~~~Rf~~~i~~~~-p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~i~~l~~~a~~~a~~~~---- 242 (285)
T 3h4m_A 169 LDPAILRPGRFDRIIEVPA-PDEKGRLEILKIHTRKMNLAEDVNLEEIAKMT-EGCVGAELKAICTEAGMNAIREL---- 242 (285)
T ss_dssp BCHHHHSTTSEEEEEECCC-CCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHTT----
T ss_pred cCHHHcCCCcCCeEEEECC-CCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhc----
Confidence 9999999999999999987 79999999999999988888888999999987 89999999999999999998764
Q ss_pred CCCCCCCccccHHHHHhchhccCCCccccc
Q psy450 431 PQVKSAPVIVTMDDFLGACSLATAPDKFSQ 460 (478)
Q Consensus 431 ~~~~~~~~~it~~d~~~A~~~~~~l~~~~p 460 (478)
...||.+||.+| ++++.+
T Consensus 243 ------~~~I~~~d~~~a------l~~~~~ 260 (285)
T 3h4m_A 243 ------RDYVTMDDFRKA------VEKIME 260 (285)
T ss_dssp ------CSSBCHHHHHHH------HHHHHH
T ss_pred ------cCcCCHHHHHHH------HHHHHh
Confidence 457999999999 666554
No 20
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=262.23 Aligned_cols=247 Identities=34% Similarity=0.566 Sum_probs=192.0
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhhhh-----hCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhh
Q psy450 202 PNVSWEDIGGLSKLKAEILSTFRGVNR-----TSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYI 275 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~~~~~~-----~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~ 275 (478)
|+.+|++++|++.+++.+.+.+..... ..|.. +.++||+||||||||++|++++++++.+++.++++++...+.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 567899999999999999988776422 12223 788999999999999999999999999999999999988888
Q ss_pred cchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCC--chhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCc
Q psy450 276 GQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQS--SGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDP 353 (478)
Q Consensus 276 g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~ 353 (478)
+.+...++.+|..+....|+||||||+|.+..++...... .......++.++..+++.....+++||+|||.++.+|+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 8888999999999998899999999999998765332111 12234677888888888777778999999999999999
Q ss_pred cccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCC--HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q psy450 354 AILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVS--LDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAP 431 (478)
Q Consensus 354 ~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~--~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~ 431 (478)
+++++|||+..+++++ |+.++|.+|++.+++..++..+.+ ...++..+ .||+|+||..+|+.|+..|.++.
T Consensus 161 ~l~~~~R~~~~i~i~~-p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~~l~~l~~~a~~~a~~~~----- 233 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDL-PTLQERREIFEQHLKSLKLTQSSTFYSQRLAELT-PGFSGADIANICNEAALHAAREG----- 233 (262)
T ss_dssp GGGSTTSCCEEEECCS-CCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTC-TTCCHHHHHHHHHHHHTC----------
T ss_pred HHhcCCcCCeEEEeCC-cCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 9999999999999997 699999999999998887665443 35677766 89999999999999998887664
Q ss_pred CCCCCCccccHHHHHhchhccCCCccccccccccc
Q psy450 432 QVKSAPVIVTMDDFLGACSLATAPDKFSQSVAPDN 466 (478)
Q Consensus 432 ~~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~~ 466 (478)
...|+.+||..| ++++.++....+
T Consensus 234 -----~~~i~~~d~~~a------~~~~~~~~~~~~ 257 (262)
T 2qz4_A 234 -----HTSVHTLNFEYA------VERVLAGTAKKS 257 (262)
T ss_dssp --------CCBCCHHHH------HHHHHHHHHCC-
T ss_pred -----CCCCCHHHHHHH------HHHhccChhhhh
Confidence 347999999999 888877765443
No 21
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=5.2e-32 Score=278.28 Aligned_cols=243 Identities=33% Similarity=0.584 Sum_probs=209.0
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhhhh-----hCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhh
Q psy450 202 PNVSWEDIGGLSKLKAEILSTFRGVNR-----TSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYI 275 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~~~~~~-----~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~ 275 (478)
+..+|++++|+++++..+.+++..... ..+.. +++++|+||||||||++|++++..++.+++.++++++...+.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhh
Confidence 788999999999999999998776422 22333 778999999999999999999999999999999999988888
Q ss_pred cchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCC-CCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCcc
Q psy450 276 GQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQE-DQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPA 354 (478)
Q Consensus 276 g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~-~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~ 354 (478)
+.....++.+|+.+....|+++||||+|.+...++.. ........+.+++++..|++...+..++++++||+|+.+|++
T Consensus 106 g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~a 185 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 185 (499)
T ss_dssp THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTT
T ss_pred hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcc
Confidence 8888899999999888889999999999998765431 112233457789999999988777889999999999999999
Q ss_pred ccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy450 355 ILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQVK 434 (478)
Q Consensus 355 l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~~ 434 (478)
++|+|||+..+++++ |+.++|.+|++.++++..+..++++..++..+ .||+|+||.++|++|+..|.++.
T Consensus 186 Llr~gRfdr~i~i~~-Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t-~G~~gadL~~lv~~Aa~~A~~~~-------- 255 (499)
T 2dhr_A 186 LLRPGRFDRQIAIDA-PDVKGREQILRIHARGKPLAEDVDLALLAKRT-PGFVGADLENLLNEAALLAAREG-------- 255 (499)
T ss_dssp TSSTTSSCCEEECCC-CCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTS-CSCCHHHHHHHHHHHHHHHTTTC--------
T ss_pred cccccccceEEecCC-CCHHHHHHHHHHHHhcCCCChHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhC--------
Confidence 999999999999998 69999999999999888888889999999987 79999999999999998776542
Q ss_pred CCCccccHHHHHhchhccCCCccccccc
Q psy450 435 SAPVIVTMDDFLGACSLATAPDKFSQSV 462 (478)
Q Consensus 435 ~~~~~it~~d~~~A~~~~~~l~~~~ps~ 462 (478)
...||.+||.+| +.++.++.
T Consensus 256 --~~~It~~dl~~a------l~~v~~~~ 275 (499)
T 2dhr_A 256 --RRKITMKDLEEA------ADRVMMLP 275 (499)
T ss_dssp --CSSCCSHHHHHH------HHHHTTCS
T ss_pred --CCccCHHHHHHH------HHHHhccc
Confidence 347999999999 76665543
No 22
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.98 E-value=1.2e-31 Score=267.47 Aligned_cols=258 Identities=31% Similarity=0.521 Sum_probs=210.3
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHhhhhhC------CCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhh
Q psy450 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNRTS------GLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK 273 (478)
Q Consensus 200 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~------~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~ 273 (478)
..+..+|++++|++.+++.|.+.+.++...+ +..+.++||+||||||||++|+++|+.++.+++.++++++...
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 3578899999999999999999998864332 2337899999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC--CCCeEEEEEcCCCCCC
Q psy450 274 YIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT--SQDVFILGATNRVDLL 351 (478)
Q Consensus 274 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~v~vI~ttn~~~~l 351 (478)
+.|..+..++.+|..+....|+||||||+|.+.+.+... ......++++.++..+++... ..+++||++||.++.+
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l 234 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG--EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEI 234 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGB
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC--cchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhC
Confidence 999999999999999999999999999999998766432 223446788899999987653 4579999999999999
Q ss_pred CccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy450 352 DPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLS-DDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSA 430 (478)
Q Consensus 352 d~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~ 430 (478)
++++++ ||+..+++++ |+.++|..|++.+++..... .+..+..++..+ .||+|+||..+|+.|+..++++..+..
T Consensus 235 ~~~l~~--Rf~~~i~i~~-p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t-~G~s~~dl~~l~~~a~~~~ir~l~~~~ 310 (357)
T 3d8b_A 235 DEAARR--RLVKRLYIPL-PEASARKQIVINLMSKEQCCLSEEEIEQIVQQS-DAFSGADMTQLCREASLGPIRSLQTAD 310 (357)
T ss_dssp CHHHHT--TCCEEEECCC-CCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHT-TTCCHHHHHHHHHHHHTHHHHHCCC--
T ss_pred CHHHHh--hCceEEEeCC-cCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999 9999999998 68999999999998765533 234578888887 899999999999999999998653211
Q ss_pred CC--CCCCCccccHHHHHhchhccCCCcccccccccccccc
Q psy450 431 PQ--VKSAPVIVTMDDFLGACSLATAPDKFSQSVAPDNYSL 469 (478)
Q Consensus 431 ~~--~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~~~~~ 469 (478)
.. .......|+.+||..| +++++||++.+++..
T Consensus 311 ~~~~~~~~~~~i~~~d~~~a------l~~~~ps~~~~~~~~ 345 (357)
T 3d8b_A 311 IATITPDQVRPIAYIDFENA------FRTVRPSVSPKDLEL 345 (357)
T ss_dssp --------CCCBCHHHHHHH------HHHHGGGCCCCCHHH
T ss_pred hccccccccCCcCHHHHHHH------HHhcCCCCCHHHHHH
Confidence 11 1234567999999999 999999998876643
No 23
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.98 E-value=1.1e-30 Score=248.34 Aligned_cols=238 Identities=33% Similarity=0.595 Sum_probs=200.7
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhhh-----hhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGVN-----RTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN 272 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~-----~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~ 272 (478)
...|..+|++++|+++++..+........ ...+.. ++|++|+||||||||+++++++..++.+++.+++.++..
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence 45688999999999999999988776542 222333 678999999999999999999999999999999999888
Q ss_pred hhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCC-CCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCC
Q psy450 273 KYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQE-DQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLL 351 (478)
Q Consensus 273 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~-~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 351 (478)
.+.+.....+..+|+.+....|+++++||+|.+...+... ........+.+++++..+++...+..++++++||+|+.+
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~l 167 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 167 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhC
Confidence 7788888889999999887889999999999998665321 112233456788899999988777789999999999999
Q ss_pred CccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q psy450 352 DPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAP 431 (478)
Q Consensus 352 d~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~ 431 (478)
|++++|++||+..++++. |+.++|.+|++.+.++..+..++++..++..+ .||+|+||.++|+.|+..|.++.
T Consensus 168 d~~l~r~~rf~~~i~i~~-p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~-~G~~~~dl~~~~~~a~~~a~~~~----- 240 (254)
T 1ixz_A 168 DPALLRPGRFDRQIAIDA-PDVKGREQILRIHARGKPLAEDVDLALLAKRT-PGFVGADLENLLNEAALLAAREG----- 240 (254)
T ss_dssp CGGGGSTTSSCEEEECCS-CCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred CHHHcCCCcCCeEEeeCC-cCHHHHHHHHHHHHcCCCCCcccCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 999999999999999997 69999999999999888888888999999987 89999999999999998887652
Q ss_pred CCCCCCccccHHHHHhc
Q psy450 432 QVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 432 ~~~~~~~~it~~d~~~A 448 (478)
...||.+||.+|
T Consensus 241 -----~~~I~~~dl~~a 252 (254)
T 1ixz_A 241 -----RRKITMKDLEEA 252 (254)
T ss_dssp -----CSSBCHHHHHHH
T ss_pred -----CCCcCHHHHHHH
Confidence 347999999998
No 24
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.98 E-value=1.3e-31 Score=260.64 Aligned_cols=258 Identities=33% Similarity=0.519 Sum_probs=208.6
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhhhhh------CCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGVNRT------SGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN 272 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~------~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~ 272 (478)
...|+.+|++++|++.+++.+.+.+..+... .+.++.++||+||||||||++|+++++.++.+++.++++++..
T Consensus 13 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp CCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 3467889999999999999999998876432 1233789999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCC---CCeEEEEEcCCCC
Q psy450 273 KYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTS---QDVFILGATNRVD 349 (478)
Q Consensus 273 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~v~vI~ttn~~~ 349 (478)
.+.|.....++.+|..+....|++|||||+|.+...+.... .....+..+.++..+++.... .+++||++||+|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE--HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc--chHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 89999999999999999999999999999999987664322 222356777888888876543 5799999999999
Q ss_pred CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy450 350 LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLS-DDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIIT 428 (478)
Q Consensus 350 ~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~ 428 (478)
.+++++++ ||+..+++++ |+.++|..|++.++++.+.. .+..+..++..+ .||+|+|+..+|+.|+..++++...
T Consensus 171 ~l~~~l~~--R~~~~i~~~~-p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~-~g~~~~~l~~l~~~a~~~a~r~~~~ 246 (297)
T 3b9p_A 171 ELDEAALR--RFTKRVYVSL-PDEQTRELLLNRLLQKQGSPLDTEALRRLAKIT-DGYSGSDLTALAKDAALEPIRELNV 246 (297)
T ss_dssp GBCHHHHH--HCCEEEECCC-CCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHT-TTCCHHHHHHHHHHHTTHHHHTCC-
T ss_pred hCCHHHHh--hCCeEEEeCC-cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999 9999999997 68999999999998876543 234477788876 8999999999999999999987532
Q ss_pred cCCC--CCCCCccccHHHHHhchhccCCCccccccccccccc
Q psy450 429 SAPQ--VKSAPVIVTMDDFLGACSLATAPDKFSQSVAPDNYS 468 (478)
Q Consensus 429 ~~~~--~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~~~~ 468 (478)
.... .......||.+||..| +.+++||++++++.
T Consensus 247 ~~~~~~~~~~~~~i~~~d~~~a------~~~~~~s~~~~~~~ 282 (297)
T 3b9p_A 247 EQVKCLDISAMRAITEQDFHSS------LKRIRRSVAPQSLN 282 (297)
T ss_dssp -------CCCCCCCCHHHHHHH------TTSCCCSSCHHHHH
T ss_pred hhcccccccccCCcCHHHHHHH------HHHcCCCCCHHHHH
Confidence 2111 1223457999999999 99999998876543
No 25
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=2.3e-30 Score=261.43 Aligned_cols=257 Identities=31% Similarity=0.494 Sum_probs=202.2
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhhhhhC------CCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGVNRTS------GLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN 272 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~------~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~ 272 (478)
...+..+|++++|++.+++.|.+.+..+.... +.++.++||+||||||||++|+++|++++.+|+.+++.++.+
T Consensus 107 ~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred ccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 45678899999999999999999998775422 233679999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC--CCCeEEEEEcCCCCC
Q psy450 273 KYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT--SQDVFILGATNRVDL 350 (478)
Q Consensus 273 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~v~vI~ttn~~~~ 350 (478)
.+.|..+..++.+|..+....|+||||||+|.+...+... ......++...|+..+++... ..+++||+|||+++.
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~ 264 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG--EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQE 264 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGG
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc--cchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchh
Confidence 9999999999999999999999999999999998765432 223346788888888887654 457999999999999
Q ss_pred CCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy450 351 LDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLS-DDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITS 429 (478)
Q Consensus 351 ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~ 429 (478)
+++++++ ||+..+++++ |+.++|..|++.++...... .+..+..++..+ .||++++|..+|+.|+..++++..+.
T Consensus 265 l~~~l~~--R~~~~i~i~~-p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~-~g~~~~~l~~L~~~a~~~~~rel~~~ 340 (389)
T 3vfd_A 265 LDEAVLR--RFIKRVYVSL-PNEETRLLLLKNLLCKQGSPLTQKELAQLARMT-DGYSGSDLTALAKDAALGPIRELKPE 340 (389)
T ss_dssp CCHHHHT--TCCEEEECCC-CCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHT-TTCCHHHHHHHHHHHTTHHHHTSCCC
T ss_pred cCHHHHc--CcceEEEcCC-cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999 9999999997 69999999999998775543 233577888877 89999999999999999999885432
Q ss_pred CCC--CCCCCccccHHHHHhchhccCCCcccccccccccc
Q psy450 430 APQ--VKSAPVIVTMDDFLGACSLATAPDKFSQSVAPDNY 467 (478)
Q Consensus 430 ~~~--~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~~~ 467 (478)
... .......|+.+||..| +++++|+++.+++
T Consensus 341 ~~~~~~~~~~~~i~~~d~~~a------l~~~~~s~~~~~l 374 (389)
T 3vfd_A 341 QVKNMSASEMRNIRLSDFTES------LKKIKRSVSPQTL 374 (389)
T ss_dssp ---CCSSSCCCCCCHHHHHHH------HHHCCCSSCHHHH
T ss_pred hhhccchhhcCCcCHHHHHHH------HHHcCCCCCHHHH
Confidence 211 2234567999999999 9999999876544
No 26
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.97 E-value=3.3e-29 Score=241.35 Aligned_cols=237 Identities=33% Similarity=0.598 Sum_probs=199.5
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHhhh-----hhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhh
Q psy450 200 SVPNVSWEDIGGLSKLKAEILSTFRGVN-----RTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK 273 (478)
Q Consensus 200 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~-----~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~ 273 (478)
..|..+|++++|++++++.+........ ...+.. +.+++|+||||||||+++++++..++.+++.+++.++...
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 112 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH
Confidence 3488999999999999999998776542 222333 6779999999999999999999999999999999988887
Q ss_pred hhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCC-CCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCC
Q psy450 274 YIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQE-DQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLD 352 (478)
Q Consensus 274 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~-~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 352 (478)
+.+.....+..+|+.+....|+++++||+|.+...+... ........+.+++++..+++...+..++++++||+|+.+|
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld 192 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILD 192 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSC
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCC
Confidence 778788888999999988889999999999987654321 1112234567788899999877777899999999999999
Q ss_pred ccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy450 353 PAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQ 432 (478)
Q Consensus 353 ~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~ 432 (478)
++++|++||+..++++. |+.++|.+|++.++++..+..++++..++..+ .||+|+||.++|+.|+..|.++.
T Consensus 193 ~~l~r~~rf~~~i~i~~-p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~-~G~~~~dl~~l~~~a~~~a~~~~------ 264 (278)
T 1iy2_A 193 PALLRPGRFDRQIAIDA-PDVKGREQILRIHARGKPLAEDVDLALLAKRT-PGFVGADLENLLNEAALLAAREG------ 264 (278)
T ss_dssp HHHHSTTSSCCEEECCC-CCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHTT------
T ss_pred HhHcCCCcCCeEEEeCC-cCHHHHHHHHHHHHccCCCCcccCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhC------
Confidence 99999999999999997 69999999999999888888888899999887 89999999999999998877642
Q ss_pred CCCCCccccHHHHHhc
Q psy450 433 VKSAPVIVTMDDFLGA 448 (478)
Q Consensus 433 ~~~~~~~it~~d~~~A 448 (478)
...||.+||.+|
T Consensus 265 ----~~~I~~~dl~~a 276 (278)
T 1iy2_A 265 ----RRKITMKDLEEA 276 (278)
T ss_dssp ----CCSBCHHHHHHH
T ss_pred ----CCCcCHHHHHHH
Confidence 347999999998
No 27
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.97 E-value=5.3e-32 Score=259.50 Aligned_cols=248 Identities=33% Similarity=0.559 Sum_probs=200.1
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhhh-----hhCCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGVN-----RTSGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN 272 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~-----~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~ 272 (478)
+..|..+|++++|++.+++.+.+.+.... ...+.. +.++||+||||||||++|++++++++.+++.++++++..
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 35678899999999999999998877532 112333 778999999999999999999999999999999999988
Q ss_pred hhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCC--CchhHHHHHHHHHHhhcCCCC-CCCeEEEEEcCCCC
Q psy450 273 KYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQ--SSGVMDRVVSQLLAEMDGVHT-SQDVFILGATNRVD 349 (478)
Q Consensus 273 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~--~~~~~~~~~~~ll~~l~~~~~-~~~v~vI~ttn~~~ 349 (478)
.+.|.....++.+|..+....|+||||||+|.+.+.+..++. ......+.++.++..+++... ..+++||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 888887777888999998889999999999999876532110 011112345677777776544 34589999999999
Q ss_pred CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy450 350 LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITS 429 (478)
Q Consensus 350 ~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~ 429 (478)
.++++++++|||+..++++. |+.++|.++++.++++..+..+.++..++..+ .||+|+||.++|+.|...|..+
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~-p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~-~g~~g~dl~~l~~~a~~~a~~~---- 236 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDK-PDFNGRVEILKVHIKGVKLANDVNLQEVAKLT-AGLAGADLANIINEAALLAGRN---- 236 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCC-CCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSS-CSSCHHHHHHHHHHHHHTTSSS----
T ss_pred hcCHhHcCCCCCCeEEEecC-cCHHHHHHHHHHHHhcCCCCCccCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHh----
Confidence 99999999999999999997 68899999999999888887788888888876 8999999999999998776543
Q ss_pred CCCCCCCCccccHHHHHhchhccCCCccccccccc
Q psy450 430 APQVKSAPVIVTMDDFLGACSLATAPDKFSQSVAP 464 (478)
Q Consensus 430 ~~~~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~ 464 (478)
....|+.+||.+| ++++.|+...
T Consensus 237 ------~~~~i~~~~~~~a------~~~~~~~~~~ 259 (268)
T 2r62_A 237 ------NQKEVRQQHLKEA------VERGIAGLEK 259 (268)
T ss_dssp ------CCCSCCHHHHHTS------CTTCCCCCC-
T ss_pred ------ccCCcCHHHHHHH------HHHHhhcchh
Confidence 2457999999999 9988887653
No 28
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.95 E-value=6e-27 Score=256.15 Aligned_cols=365 Identities=13% Similarity=0.157 Sum_probs=250.8
Q ss_pred cchhhhhHHHHhhhhcCCCeEEEecccccccchh--------hHhhhccccccccccccchhhhccCCCcEEEEe-----
Q psy450 28 RYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVKY--------VYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL----- 94 (478)
Q Consensus 28 ~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r~--------~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via----- 94 (478)
.+..++.+|+ .++...++||||||+|.+++.+. .+.+... ...+.+.+|+
T Consensus 263 ~e~~l~~~~~-~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~----------------l~~~~~~~I~at~~~ 325 (758)
T 1r6b_X 263 FEKRFKALLK-QLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPL----------------LSSGKIRVIGSTTYQ 325 (758)
T ss_dssp HHHHHHHHHH-HHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSC----------------SSSCCCEEEEEECHH
T ss_pred HHHHHHHHHH-HHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHH----------------HhCCCeEEEEEeCch
Confidence 3447888998 88888899999999999975431 1111111 2234566666
Q ss_pred -------eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcC--CCCCCChhHHHHHHHhcCC-----CCHHHHHHHHHH
Q psy450 95 -------IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLG--GDYGFDASLVEYLSSVTSG-----FERHDLTCLVRL 160 (478)
Q Consensus 95 -------ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~--~~~~~~~~~i~~la~~t~G-----~s~~di~~l~~~ 160 (478)
+|+++.|||+ .+.|+.|+.++|.+||+.+...+. .....+.+.++.++..+.| +.+..+..++++
T Consensus 326 ~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~ 404 (758)
T 1r6b_X 326 EFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDE 404 (758)
T ss_dssp HHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHH
T ss_pred HHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHH
Confidence 6899999997 799999999999999998876521 1233444445777766554 556678888888
Q ss_pred HHHHHHHhh-cCCCCCCCHHHHHHHHHHhhhhcccCCCCCC------CCCCCcccccCcHHHHHHHHHHHHhhhhhC---
Q psy450 161 SVKNKMLKQ-GINKRDLQKEDFQQIYDDLQSRYSDQLDAPS------VPNVSWEDIGGLSKLKAEILSTFRGVNRTS--- 230 (478)
Q Consensus 161 a~~~a~~~~-~~~~~~it~~d~~~a~~~~~~~~~~~~~~~~------~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~--- 230 (478)
|+....... ......++.+|+..++..+.+.......... ....-.++++|++.+++.+...+.......
T Consensus 405 a~~~~~~~~~~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~ 484 (758)
T 1r6b_X 405 AGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHE 484 (758)
T ss_dssp HHHHHHHSSSCCCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCT
T ss_pred HHHHHhcccccccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHhcccCCC
Confidence 876654321 1235679999999999887532211110000 000012358899999999888776654321
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhh------------hhcchHHHHHHHHHHhHhCCCeEEE
Q psy450 231 GLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK------------YIGQSEENIRNVFLKARSAAPCVVF 298 (478)
Q Consensus 231 ~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~------------~~g~~~~~~~~~~~~a~~~~p~il~ 298 (478)
+.+..++||+||||||||++|+++++.++.+++.++++++... |.|..+. ..+....+...++|||
T Consensus 485 ~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~ 562 (758)
T 1r6b_X 485 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLL 562 (758)
T ss_dssp TSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEE
T ss_pred CCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEE
Confidence 2224579999999999999999999999999999999887543 3332221 1223344456678999
Q ss_pred EcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC---------CCCeEEEEEcCCCC--------------------
Q psy450 299 FDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT---------SQDVFILGATNRVD-------------------- 349 (478)
Q Consensus 299 iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---------~~~v~vI~ttn~~~-------------------- 349 (478)
|||+|.+. ..+++.|+..++...- ..+++||+|||.+.
T Consensus 563 lDEi~~~~-------------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~ 629 (758)
T 1r6b_X 563 LDEIEKAH-------------PDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAM 629 (758)
T ss_dssp EETGGGSC-------------HHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CH
T ss_pred EeCccccC-------------HHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHH
Confidence 99999886 3567777777763211 24688999999854
Q ss_pred -----CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcC-----------CCCCCCCHHHHHHh-cCCCCCHHHHH
Q psy450 350 -----LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKF-----------KLSDDVSLDSLVHH-FPSQMSGADIY 412 (478)
Q Consensus 350 -----~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~-----------~~~~~~~~~~la~~-~~~~~sg~di~ 412 (478)
.+++++++ ||+..+.++. ++.+++..|++.++... .++++ -+..++.+ ++.++..+++.
T Consensus 630 ~~~~~~~~~~l~~--R~~~~i~~~~-l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~-a~~~l~~~~~~~~~g~R~l~ 705 (758)
T 1r6b_X 630 EEIKKIFTPEFRN--RLDNIIWFDH-LSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQE-ARNWLAEKGYDRAMGARPMA 705 (758)
T ss_dssp HHHHHHSCHHHHT--TCSEEEECCC-CCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHH-HHHHHHHHHCBTTTBTTTHH
T ss_pred HHHHHhcCHHHHh--hCCcceeeCC-CCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHH-HHHHHHHhCCCcCCCchHHH
Confidence 56788888 9999999985 78999999998877532 22222 25556653 33456678999
Q ss_pred HHHHHHHHHHHHHHHhc
Q psy450 413 SICSNAWTRAIRRIITS 429 (478)
Q Consensus 413 ~l~~~a~~~a~~r~~~~ 429 (478)
++++.+...++.+.+-.
T Consensus 706 ~~i~~~~~~~l~~~~l~ 722 (758)
T 1r6b_X 706 RVIQDNLKKPLANELLF 722 (758)
T ss_dssp HHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999998877776543
No 29
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.95 E-value=3.1e-26 Score=250.17 Aligned_cols=360 Identities=12% Similarity=0.150 Sum_probs=234.6
Q ss_pred cchhhhhHHHHhhhhcCCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe------------e
Q psy450 28 RYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL------------I 95 (478)
Q Consensus 28 ~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via------------l 95 (478)
.+..++.+|+ .++...|+||||| +.....+.++..|+ .+.+.+|| +
T Consensus 252 ~e~~l~~~~~-~~~~~~~~iLfiD-----~~~~~~~~L~~~l~----------------~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 252 FEDRLKKVMD-EIRQAGNIILFID-----AAIDASNILKPSLA----------------RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp -CTTHHHHHH-HHHTCCCCEEEEC-----C--------CCCTT----------------SSSCEEEEECCTTTTHHHHTT
T ss_pred HHHHHHHHHH-HHHhcCCEEEEEc-----CchhHHHHHHHHHh----------------cCCEEEEeCCChHHHHHHhhc
Confidence 3448999999 9998999999999 22333333443333 34577777 7
Q ss_pred CHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCC--CCCCChhHHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHh
Q psy450 96 RKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGG--DYGFDASLVEYLSSV-----TSGFERHDLTCLVRLSVKNKMLK 168 (478)
Q Consensus 96 d~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~--~~~~~~~~i~~la~~-----t~G~s~~di~~l~~~a~~~a~~~ 168 (478)
||+++||| ..|.|+.|+.+++.+||+.+...+.. ....+.+.+..++.. ++++.+.....++++|+..+..+
T Consensus 310 d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 310 DAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLR 388 (758)
T ss_dssp CSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHH
T ss_pred cHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhh
Confidence 99999999 56999999999999999988766421 223344444666554 34667777777787776654322
Q ss_pred hc----------------------------------------------------------CCCCCCCHHHHHHHHHHhhh
Q psy450 169 QG----------------------------------------------------------INKRDLQKEDFQQIYDDLQS 190 (478)
Q Consensus 169 ~~----------------------------------------------------------~~~~~it~~d~~~a~~~~~~ 190 (478)
.. ....+++.+++...+.....
T Consensus 389 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~i~~~v~~~~~ 468 (758)
T 3pxi_A 389 SFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTG 468 (758)
T ss_dssp TTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHCC---CCTHHHHHHHHTTC-
T ss_pred ccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccCHHHHHHHHHHHhC
Confidence 10 12334555555555544432
Q ss_pred hcccCCC------CCCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCC--C-ceEEEeCCCCChHHHHHHHHHHHh---
Q psy450 191 RYSDQLD------APSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLK--R-SGLLLYGPPGTGKTLIAKAVATEC--- 258 (478)
Q Consensus 191 ~~~~~~~------~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~--~-~~iLl~Gp~GtGKT~la~~la~~~--- 258 (478)
....... .......-.++++|++.+++.+...+.........+ | .++||+||||||||++|+++++.+
T Consensus 469 ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~ 548 (758)
T 3pxi_A 469 VPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD 548 (758)
T ss_dssp ------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC
T ss_pred CChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 1111000 000011113568999999999998887764332221 3 379999999999999999999998
Q ss_pred CCcEEEEechhhhhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC----
Q psy450 259 RMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH---- 334 (478)
Q Consensus 259 ~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---- 334 (478)
+.+++.++++++...+... . ..+....+...++||||||+|.+. ..+.+.|+..++...
T Consensus 549 ~~~~i~i~~s~~~~~~~~~-~---~~l~~~~~~~~~~vl~lDEi~~~~-------------~~~~~~Ll~~le~g~~~~~ 611 (758)
T 3pxi_A 549 EESMIRIDMSEYMEKHSTS-G---GQLTEKVRRKPYSVVLLDAIEKAH-------------PDVFNILLQVLEDGRLTDS 611 (758)
T ss_dssp TTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGSC-------------HHHHHHHHHHHHHSBCC--
T ss_pred CcceEEEechhcccccccc-c---chhhHHHHhCCCeEEEEeCccccC-------------HHHHHHHHHHhccCeEEcC
Confidence 6789999999987665443 1 122333445567899999999886 356677777776422
Q ss_pred -----CCCCeEEEEEcCCCCC------------CCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcC-------CCC
Q psy450 335 -----TSQDVFILGATNRVDL------------LDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKF-------KLS 390 (478)
Q Consensus 335 -----~~~~v~vI~ttn~~~~------------ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~-------~~~ 390 (478)
...++++|+|||.+.. +.|.+++ ||+..+.++. ++.+++..|++.++..+ +..
T Consensus 612 ~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~-l~~~~~~~i~~~~l~~~~~~~~~~~~~ 688 (758)
T 3pxi_A 612 KGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHS-LEKKHLTEIVSLMSDQLTKRLKEQDLS 688 (758)
T ss_dssp ---CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC---CHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred CCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCC-CCHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 2346899999997654 7888888 9999999985 78999999998776542 111
Q ss_pred CC---CCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy450 391 DD---VSLDSLVHH-FPSQMSGADIYSICSNAWTRAIRRIITSA 430 (478)
Q Consensus 391 ~~---~~~~~la~~-~~~~~sg~di~~l~~~a~~~a~~r~~~~~ 430 (478)
.. .-+..++.+ +.-.++.++++++++.+...++.+.+-.+
T Consensus 689 ~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~l~~ 732 (758)
T 3pxi_A 689 IELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRG 732 (758)
T ss_dssp EEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHHHTT
T ss_pred EEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHcC
Confidence 11 125556554 33346778999999999988888776443
No 30
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.6e-27 Score=236.02 Aligned_cols=155 Identities=11% Similarity=0.199 Sum_probs=137.6
Q ss_pred HHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhhcc
Q psy450 19 LLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQCK 85 (478)
Q Consensus 19 ~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~~~ 85 (478)
++++|.|++.. ++|.+|. .|++.+||||||||+|+++++| .++++|++||++ .
T Consensus 218 l~sk~vGese~-~vr~lF~-~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~------------~ 283 (405)
T 4b4t_J 218 LVQKYIGEGSR-MVRELFV-MAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF------------E 283 (405)
T ss_dssp GSCSSTTHHHH-HHHHHHH-HHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT------------T
T ss_pred hhccccchHHH-HHHHHHH-HHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc------------C
Confidence 44566666655 9999999 9999999999999999999875 578899999954 5
Q ss_pred CCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHH
Q psy450 86 QQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTC 156 (478)
Q Consensus 86 ~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~ 156 (478)
...+|+||| +|||++| |||+.|+|++||.++|.+||+.+++++ ++..++++ +.||+.|+||||+||+.
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~--~l~~dvdl-~~lA~~t~G~SGADi~~ 360 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM--NLTRGINL-RKVAEKMNGCSGADVKG 360 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS--BCCSSCCH-HHHHHHCCSCCHHHHHH
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCC--CCCccCCH-HHHHHHCCCCCHHHHHH
Confidence 677899998 9999999 999999999999999999999999988 66778888 99999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhcc
Q psy450 157 LVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQSRYS 193 (478)
Q Consensus 157 l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~~~~ 193 (478)
+|++|+..++++ +...|+++||..|++.+.+...
T Consensus 361 l~~eA~~~Air~---~~~~vt~~Df~~Al~~v~~~~~ 394 (405)
T 4b4t_J 361 VCTEAGMYALRE---RRIHVTQEDFELAVGKVMNKNQ 394 (405)
T ss_dssp HHHHHHHHHHHT---TCSBCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc---CCCCcCHHHHHHHHHHHhCccc
Confidence 999999999876 5678999999999999876543
No 31
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.94 E-value=1.8e-26 Score=251.99 Aligned_cols=245 Identities=41% Similarity=0.664 Sum_probs=211.4
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHhhhhh------CCCC-CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh
Q psy450 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNRT------SGLK-RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN 272 (478)
Q Consensus 200 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~------~~~~-~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~ 272 (478)
..+.++|++|+|++++++.|.+.+..+... .+.. +.++||+||||||||++|++++..++.+++.+++.++.+
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 456789999999999999999999886433 2333 778999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCC
Q psy450 273 KYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLD 352 (478)
Q Consensus 273 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld 352 (478)
.+.+..+..++.+|+.+....|+++|+||+|.+.+.++. .......++...++..+++.....++++|++||+++.++
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~--~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK--THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSC--CCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccc--ccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcC
Confidence 999999999999999999999999999999999987643 233445688899999999988788899999999999999
Q ss_pred ccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy450 353 PAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQ 432 (478)
Q Consensus 353 ~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~ 432 (478)
+++++++||+..+.++. |+.++|.+|++.+++++.+..+.++..++..+ .||+++++..+|+.|+..++++.......
T Consensus 355 ~al~r~gRf~~~i~i~~-p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t-~g~~g~dl~~l~~ea~~~a~r~~~~~i~~ 432 (806)
T 1ypw_A 355 PALRRFGRFDREVDIGI-PDATGRLEILQIHTKNMKLADDVDLEQVANET-HGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp TTTTSTTSSCEEECCCC-CCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSC-SSCCHHHHHHHHHHHHHHHHHHTTTTTSC
T ss_pred HHHhcccccccccccCC-CCHHHHHHHHHHHHhcCCCcccchhHHHHHhh-cCcchHHHHHHHHHHHHHHHhhhccccch
Confidence 99999999999999998 69999999999999999988888999999887 89999999999999999988875321110
Q ss_pred -------CCCCCccccHHHHHhc
Q psy450 433 -------VKSAPVIVTMDDFLGA 448 (478)
Q Consensus 433 -------~~~~~~~it~~d~~~A 448 (478)
.......++.+||..+
T Consensus 433 ~~~~~~~~~~~~~~v~~~d~~~a 455 (806)
T 1ypw_A 433 EDETIDAEVMNSLAVTMDDFRWA 455 (806)
T ss_dssp HHHHCCHHHHTTCCCCTTHHHHH
T ss_pred hhhccchhhhhhhhhhhhhhhcc
Confidence 0113456888999988
No 32
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.9e-27 Score=233.06 Aligned_cols=155 Identities=13% Similarity=0.177 Sum_probs=137.8
Q ss_pred HHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhhcc
Q psy450 19 LLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQCK 85 (478)
Q Consensus 19 ~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~~~ 85 (478)
++++|.+++.. .++.+|. .|++.+||||||||+|+++++| .++++|++||++ .
T Consensus 252 l~sk~vGesek-~ir~lF~-~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~------------~ 317 (437)
T 4b4t_I 252 LIQKYLGDGPR-LCRQIFK-VAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF------------D 317 (437)
T ss_dssp GCCSSSSHHHH-HHHHHHH-HHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC------------C
T ss_pred hhhccCchHHH-HHHHHHH-HHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc------------C
Confidence 45566666655 9999999 9999999999999999999877 577888888854 5
Q ss_pred CCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHH
Q psy450 86 QQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTC 156 (478)
Q Consensus 86 ~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~ 156 (478)
..++|+||| ||||++| |||++|+|++||.++|.+||+.+++++ ++..++++ +.||+.|+||||+||++
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~--~l~~dvdl-~~LA~~T~GfSGADI~~ 394 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM--NLSEDVNL-ETLVTTKDDLSGADIQA 394 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS--CBCSCCCH-HHHHHHCCSCCHHHHHH
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC--CCCCcCCH-HHHHHhCCCCCHHHHHH
Confidence 677899998 9999999 999999999999999999999999988 66778888 99999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhcc
Q psy450 157 LVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQSRYS 193 (478)
Q Consensus 157 l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~~~~ 193 (478)
+|++|+..++++ ....|+.+||..|++.+.++..
T Consensus 395 l~~eA~~~Air~---~~~~It~eDf~~Al~rv~~~~~ 428 (437)
T 4b4t_I 395 MCTEAGLLALRE---RRMQVTAEDFKQAKERVMKNKV 428 (437)
T ss_dssp HHHHHHHHHHHT---TCSCBCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc---CCCccCHHHHHHHHHHHhCCCC
Confidence 999999999876 5677999999999999887654
No 33
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.93 E-value=3.4e-26 Score=221.64 Aligned_cols=171 Identities=24% Similarity=0.343 Sum_probs=132.8
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHHHHHHHHHh----HhCCCeEEEEcCCccccCCC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKA----RSAAPCVVFFDELDSLAPRR 309 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~ 309 (478)
|.++||+||||||||++|+++|++++.+++.++++++.+.+.|.++..++.+|..+ +...|+||||||+|.+.+++
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~ 115 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRM 115 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCC
Confidence 78999999999999999999999999999999999999999999999999999988 57789999999999999865
Q ss_pred CCCCCCchhHHHHHHHHHHhhcCCC-----------CCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHH
Q psy450 310 GQEDQSSGVMDRVVSQLLAEMDGVH-----------TSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLG 378 (478)
Q Consensus 310 ~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~ 378 (478)
++........+.+.+.|+..+++.. ...+++||+|||+++.+|++++|+|||+..++ + |+.++|.+
T Consensus 116 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~-P~~~~r~~ 192 (293)
T 3t15_A 116 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--A-PTREDRIG 192 (293)
T ss_dssp --------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--C-CCHHHHHH
T ss_pred CCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--C-cCHHHHHH
Confidence 4333323334567788888887443 45579999999999999999999999999887 3 59999999
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHH
Q psy450 379 VLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIY 412 (478)
Q Consensus 379 il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~ 412 (478)
|++.++... +++...++..+ .+|++++|.
T Consensus 193 Il~~~~~~~----~~~~~~l~~~~-~~~~~~~l~ 221 (293)
T 3t15_A 193 VCTGIFRTD----NVPAEDVVKIV-DNFPGQSID 221 (293)
T ss_dssp HHHHHHGGG----CCCHHHHHHHH-HHSCSCCHH
T ss_pred HHHHhccCC----CCCHHHHHHHh-CCCCcccHH
Confidence 999888653 45588888776 789998875
No 34
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.4e-26 Score=232.85 Aligned_cols=157 Identities=16% Similarity=0.183 Sum_probs=138.5
Q ss_pred HHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhhcc
Q psy450 19 LLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQCK 85 (478)
Q Consensus 19 ~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~~~ 85 (478)
++++|.+++.. .++.+|. .|+..+||||||||+|+|+++| .++++|++||++ .
T Consensus 251 l~~~~vGese~-~ir~lF~-~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~------------~ 316 (434)
T 4b4t_M 251 LVQMYIGEGAK-LVRDAFA-LAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF------------S 316 (434)
T ss_dssp GCSSCSSHHHH-HHHHHHH-HHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS------------C
T ss_pred hhhcccchHHH-HHHHHHH-HHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc------------C
Confidence 45566666655 9999999 9999999999999999999876 467889999954 5
Q ss_pred CCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHH
Q psy450 86 QQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTC 156 (478)
Q Consensus 86 ~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~ 156 (478)
..++|+||| +|||++| |||+.|+|++||.++|.+||+.+++++ ++..++++ +.||+.|+||||+||++
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~--~~~~dvdl-~~lA~~t~G~sGADi~~ 393 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM--TTDDDINW-QELARSTDEFNGAQLKA 393 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHS--CBCSCCCH-HHHHHHCSSCCHHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCC--CCCCcCCH-HHHHHhCCCCCHHHHHH
Confidence 567789988 9999999 999999999999999999999999988 66778888 99999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhcccC
Q psy450 157 LVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQSRYSDQ 195 (478)
Q Consensus 157 l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~~~~~~ 195 (478)
+|++|+..++++ +...|+++||..|+..++++..+.
T Consensus 394 l~~eA~~~a~r~---~~~~i~~~Df~~Al~~v~~~~~~~ 429 (434)
T 4b4t_M 394 VTVEAGMIALRN---GQSSVKHEDFVEGISEVQARKSKS 429 (434)
T ss_dssp HHHHHHHHHHHH---TCSSBCHHHHHHHHHSCSSSCCCC
T ss_pred HHHHHHHHHHHc---CCCCcCHHHHHHHHHHHhCCCCcC
Confidence 999999999876 567899999999999998765543
No 35
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.4e-26 Score=227.74 Aligned_cols=155 Identities=10% Similarity=0.163 Sum_probs=136.9
Q ss_pred HHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhhcc
Q psy450 19 LLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQCK 85 (478)
Q Consensus 19 ~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~~~ 85 (478)
++++|++++.. .++.+|. .|+..+||||||||+|+++++| .++++|++||+. .
T Consensus 279 L~sk~vGesek-~ir~lF~-~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~------------~ 344 (467)
T 4b4t_H 279 LVQKYVGEGAR-MVRELFE-MARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF------------D 344 (467)
T ss_dssp GCCCSSSHHHH-HHHHHHH-HHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS------------C
T ss_pred hhcccCCHHHH-HHHHHHH-HHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc------------C
Confidence 45566666655 9999999 9999999999999999999876 567888888854 5
Q ss_pred CCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHH
Q psy450 86 QQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTC 156 (478)
Q Consensus 86 ~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~ 156 (478)
..++|+||| ||||++| |||++|+|++||.++|.+||+.+++++ ++..++++ +.||+.|+||||+||+.
T Consensus 345 ~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~--~l~~dvdl-~~LA~~T~GfSGADI~~ 421 (467)
T 4b4t_H 345 PRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSM--SVERGIRW-ELISRLCPNSTGAELRS 421 (467)
T ss_dssp CTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTS--CBCSSCCH-HHHHHHCCSCCHHHHHH
T ss_pred CCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCC--CCCCCCCH-HHHHHHCCCCCHHHHHH
Confidence 677899888 9999999 999999999999999999999999988 66778888 99999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhcc
Q psy450 157 LVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQSRYS 193 (478)
Q Consensus 157 l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~~~~ 193 (478)
+|++|+..++++ +...++++||..|+.++.++..
T Consensus 422 l~~eAa~~Air~---~~~~it~~Df~~Al~kV~~g~~ 455 (467)
T 4b4t_H 422 VCTEAGMFAIRA---RRKVATEKDFLKAVDKVISGYK 455 (467)
T ss_dssp HHHHHHHHHHHH---TCSSBCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc---CCCccCHHHHHHHHHHHhcCcc
Confidence 999999999876 5667999999999999876543
No 36
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.7e-26 Score=229.21 Aligned_cols=154 Identities=10% Similarity=0.159 Sum_probs=136.4
Q ss_pred HHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhhcc
Q psy450 19 LLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQCK 85 (478)
Q Consensus 19 ~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~~~ 85 (478)
++++|.+++.. .++.+|. .|+..+||||||||+|+++++| .++++|++||++ .
T Consensus 251 l~sk~~Gese~-~ir~~F~-~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~------------~ 316 (437)
T 4b4t_L 251 IVDKYIGESAR-IIREMFA-YAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF------------D 316 (437)
T ss_dssp TCCSSSSHHHH-HHHHHHH-HHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS------------S
T ss_pred hccccchHHHH-HHHHHHH-HHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc------------c
Confidence 45667776655 9999999 9999999999999999999876 578899999964 5
Q ss_pred CCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHH
Q psy450 86 QQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTC 156 (478)
Q Consensus 86 ~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~ 156 (478)
..++|+||| +|||++| |||+.|+|++||.++|.+||+.+++++ ++..++++ +.+|+.|+||||+||+.
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~--~~~~d~dl-~~lA~~t~G~sGADi~~ 393 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV--KKTGEFDF-EAAVKMSDGFNGADIRN 393 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTS--CBCSCCCH-HHHHHTCCSCCHHHHHH
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCC--CCCcccCH-HHHHHhCCCCCHHHHHH
Confidence 567788888 9999999 799999999999999999999999988 66778888 99999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhc
Q psy450 157 LVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQSRY 192 (478)
Q Consensus 157 l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~~~ 192 (478)
+|++|+..++++ +...|+.+||..|++.+.+..
T Consensus 394 l~~eA~~~air~---~~~~i~~~d~~~Al~~v~~~~ 426 (437)
T 4b4t_L 394 CATEAGFFAIRD---DRDHINPDDLMKAVRKVAEVK 426 (437)
T ss_dssp HHHHHHHHHHHT---TCSSBCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHc---CCCCCCHHHHHHHHHHHHhcc
Confidence 999999999865 566799999999999987753
No 37
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.92 E-value=2.1e-24 Score=238.21 Aligned_cols=372 Identities=15% Similarity=0.168 Sum_probs=227.1
Q ss_pred chhhhhHHHHhhhhc-CCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe-----------eC
Q psy450 29 YHHLNDIVKINLKKY-NLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL-----------IR 96 (478)
Q Consensus 29 ~~~~~~if~~~a~~~-~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via-----------ld 96 (478)
...++.+|+ .++.. .|+||||||+|.+.+.+.-. ..+|.... .......+.+.+|+ +|
T Consensus 248 ~~~l~~~~~-~~~~~~~~~iL~IDEi~~l~~~~~~~---g~~~~~~~------L~~~l~~~~i~~I~at~~~~~~~~~~d 317 (854)
T 1qvr_A 248 EERLKAVIQ-EVVQSQGEVILFIDELHTVVGAGKAE---GAVDAGNM------LKPALARGELRLIGATTLDEYREIEKD 317 (854)
T ss_dssp HHHHHHHHH-HHHTTCSSEEEEECCC----------------------------HHHHHTTCCCEEEEECHHHHHHHTTC
T ss_pred HHHHHHHHH-HHHhcCCCeEEEEecHHHHhccCCcc---chHHHHHH------HHHHHhCCCeEEEEecCchHHhhhccC
Confidence 347888998 77764 79999999999998654110 00111000 00112234455665 49
Q ss_pred HhHHhccccEEEeCCCCHHHHHHHHHHHHhhcC--CCCCCChhHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHhh
Q psy450 97 KQIQKLFLKTINVLPLTEPERRLLIQYQLDCLG--GDYGFDASLVEYLSSVT-----SGFERHDLTCLVRLSVKNKMLKQ 169 (478)
Q Consensus 97 ~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~--~~~~~~~~~i~~la~~t-----~G~s~~di~~l~~~a~~~a~~~~ 169 (478)
+++.|||+. |.|+.|+.+++.+||+.++..+. .....+.+.+..++..+ ++|.+.....++++|+.....+.
T Consensus 318 ~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~~ 396 (854)
T 1qvr_A 318 PALERRFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMAL 396 (854)
T ss_dssp TTTCSCCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhhc
Confidence 999999985 99999999999999998876431 12223444446666644 45666677777766665443210
Q ss_pred c-------------------------------------------------------------------------------
Q psy450 170 G------------------------------------------------------------------------------- 170 (478)
Q Consensus 170 ~------------------------------------------------------------------------------- 170 (478)
.
T Consensus 397 ~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (854)
T 1qvr_A 397 ESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRRE 476 (854)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0
Q ss_pred ---------------------------------------CCCCCCCHHHHHHHHHHhhhhcccCCCC------CCCCCCC
Q psy450 171 ---------------------------------------INKRDLQKEDFQQIYDDLQSRYSDQLDA------PSVPNVS 205 (478)
Q Consensus 171 ---------------------------------------~~~~~it~~d~~~a~~~~~~~~~~~~~~------~~~~~~~ 205 (478)
.-..+++.+++...+....+........ ...+...
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l 556 (854)
T 1qvr_A 477 IELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEEL 556 (854)
T ss_dssp HHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHH
T ss_pred HHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhhhcccccccCCcCHHHHHHHHHHHhCCChHhhcHHHHHHHHHHHHHH
Confidence 0012233333333333222110000000 0001112
Q ss_pred cccccCcHHHHHHHHHHHHhhhhh---CCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh------
Q psy450 206 WEDIGGLSKLKAEILSTFRGVNRT---SGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK------ 273 (478)
Q Consensus 206 ~~~i~g~~~~k~~l~~~~~~~~~~---~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~------ 273 (478)
+++++|++.+++.+...+...... ++.+..++||+||||||||++|+++++.+ +.+++.++|+++...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l 636 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRL 636 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHH
Confidence 457899999999998888766432 22223589999999999999999999998 789999999876432
Q ss_pred ------hhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC---------CCCC
Q psy450 274 ------YIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH---------TSQD 338 (478)
Q Consensus 274 ------~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~ 338 (478)
|+|... ...+....+...++||||||++.+. ..+++.|+..++... +-.+
T Consensus 637 ~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~-------------~~~~~~Ll~~l~~~~~~~~~g~~vd~~~ 701 (854)
T 1qvr_A 637 IGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH-------------PDVFNILLQILDDGRLTDSHGRTVDFRN 701 (854)
T ss_dssp ----------------CHHHHHHHCSSEEEEESSGGGSC-------------HHHHHHHHHHHTTTEECCSSSCCEECTT
T ss_pred cCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC-------------HHHHHHHHHHhccCceECCCCCEeccCC
Confidence 122222 1223333444556899999999886 467788888887432 1246
Q ss_pred eEEEEEcCCC--------------------------CCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcC-----
Q psy450 339 VFILGATNRV--------------------------DLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKF----- 387 (478)
Q Consensus 339 v~vI~ttn~~--------------------------~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~----- 387 (478)
++||+|||.. ..+.|.|+. ||+..+.+.+ ++.++...|++.++...
T Consensus 702 ~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~p-l~~edi~~i~~~~l~~~~~~~~ 778 (854)
T 1qvr_A 702 TVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRP-LTKEQIRQIVEIQLSYLRARLA 778 (854)
T ss_dssp EEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCC-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 8899999972 246677777 9998888864 78999999998877521
Q ss_pred ------CCCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy450 388 ------KLSDDVSLDSLVHHFP-SQMSGADIYSICSNAWTRAIRRIITSA 430 (478)
Q Consensus 388 ------~~~~~~~~~~la~~~~-~~~sg~di~~l~~~a~~~a~~r~~~~~ 430 (478)
.++++ -+..|+.+.. ..++.+++.++++.+...++.+.+..+
T Consensus 779 ~~~~~~~~~~~-a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~ 827 (854)
T 1qvr_A 779 EKRISLELTEA-AKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAG 827 (854)
T ss_dssp TTTCEEEECHH-HHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHHHT
T ss_pred hCCceEEECHH-HHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHhC
Confidence 12222 2556666531 146778999999999998888876543
No 38
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.2e-25 Score=220.77 Aligned_cols=151 Identities=15% Similarity=0.221 Sum_probs=133.6
Q ss_pred HHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhhcc
Q psy450 19 LLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQCK 85 (478)
Q Consensus 19 ~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~~~ 85 (478)
++++|.+++.. +++.+|. .|++.+||||||||+|++++.| .++++|++||++ .
T Consensus 242 l~~~~~Ge~e~-~ir~lF~-~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~------------~ 307 (428)
T 4b4t_K 242 FVHKYLGEGPR-MVRDVFR-LARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF------------D 307 (428)
T ss_dssp TCCSSCSHHHH-HHHHHHH-HHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS------------C
T ss_pred hhccccchhHH-HHHHHHH-HHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC------------C
Confidence 45566666655 9999999 9999999999999999999876 688999999954 5
Q ss_pred CCCcEEEEe-------eCHhHHh--ccccEEEeC-CCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHH
Q psy450 86 QQHKKKLVL-------IRKQIQK--LFLKTINVL-PLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLT 155 (478)
Q Consensus 86 ~~~~v~via-------ld~al~r--Rf~~~i~~~-~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~ 155 (478)
...+|+||| +|||++| |||+.|+|| +||.++|.+||+.+++++ ++..++++ +.+|..|+||||+||+
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~--~l~~~~dl-~~lA~~t~G~sgadi~ 384 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM--SLAPEADL-DSLIIRNDSLSGAVIA 384 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS--CBCTTCCH-HHHHHHTTTCCHHHHH
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC--CCCcccCH-HHHHHHCCCCCHHHHH
Confidence 567788888 9999999 999999996 899999999999999988 66778888 9999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhh
Q psy450 156 CLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQ 189 (478)
Q Consensus 156 ~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~ 189 (478)
.+|++|+..++++ +...|+++||..|+....
T Consensus 385 ~l~~eA~~~a~r~---~~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 385 AIMQEAGLRAVRK---NRYVILQSDLEEAYATQV 415 (428)
T ss_dssp HHHHHHHHHHHHT---TCSSBCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHC---CCCCCCHHHHHHHHHHhh
Confidence 9999999999876 567899999999998653
No 39
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.88 E-value=7.1e-25 Score=225.53 Aligned_cols=206 Identities=20% Similarity=0.285 Sum_probs=141.4
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC--CcEEEEechhhhhhhhcc
Q psy450 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR--MNFLAVKGPELLNKYIGQ 277 (478)
Q Consensus 200 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~--~~~~~v~~~~l~~~~~g~ 277 (478)
..|...|++++|++++++.+...+...... ..+++++||+||||||||++|+++|++++ .+|+.++++++.+.+.|.
T Consensus 30 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~-~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~ 108 (456)
T 2c9o_A 30 GLAKQAASGLVGQENAREACGVIVELIKSK-KMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKK 108 (456)
T ss_dssp SCBCSEETTEESCHHHHHHHHHHHHHHHTT-CCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCH
T ss_pred cChhhchhhccCHHHHHHHHHHHHHHHHhC-CCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhh
Confidence 356778999999999999999887665432 22368999999999999999999999999 999999999999999999
Q ss_pred hHHHHHHHHHHh---HhCCCeEEEEcCCccccCCCCCCCCCc--hhHH---------------HHHHHHHHhhc--CCCC
Q psy450 278 SEENIRNVFLKA---RSAAPCVVFFDELDSLAPRRGQEDQSS--GVMD---------------RVVSQLLAEMD--GVHT 335 (478)
Q Consensus 278 ~~~~~~~~~~~a---~~~~p~il~iDeid~l~~~~~~~~~~~--~~~~---------------~~~~~ll~~l~--~~~~ 335 (478)
++. ++..|..+ +...|+||||||+|.++++++....+. .... ++...++..++ +...
T Consensus 109 ~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~ 187 (456)
T 2c9o_A 109 TEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEA 187 (456)
T ss_dssp HHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCT
T ss_pred hHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCC
Confidence 987 99999999 778899999999999998875432110 0000 11233444443 3333
Q ss_pred CCCeEEEEEcCCCCCCCccccCCCCCCe--EEEeCCCC-CHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHH
Q psy450 336 SQDVFILGATNRVDLLDPAILRPGRLDK--SLYVGLYE-DRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIY 412 (478)
Q Consensus 336 ~~~v~vI~ttn~~~~ld~~l~~~~Rf~~--~i~~~~pp-~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~ 412 (478)
...++|++|||+++.+|++++|+|||+. .+++++|. +.++|.+|++.+... +++.++..+ .| |+|+.
T Consensus 188 ~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~-------dl~~~a~~t-~g--gadl~ 257 (456)
T 2c9o_A 188 GDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLH-------DLDVANARP-QG--GQDIL 257 (456)
T ss_dssp TEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHH-------HHHHTC-------------
T ss_pred CCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHH-------HHHHHHHhC-CC--hhHHH
Confidence 3446667999999999999999999998 66777742 335566666543321 477777766 67 88999
Q ss_pred HHHHH
Q psy450 413 SICSN 417 (478)
Q Consensus 413 ~l~~~ 417 (478)
++|..
T Consensus 258 ~l~~~ 262 (456)
T 2c9o_A 258 SMMGQ 262 (456)
T ss_dssp -----
T ss_pred HHHhh
Confidence 98854
No 40
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.86 E-value=1e-21 Score=191.79 Aligned_cols=230 Identities=19% Similarity=0.220 Sum_probs=169.9
Q ss_pred ccccCcHHHHHHHHHHHHhhhh-----hC----CCCCceEEEeCCCCChHHHHHHHHHHHh-------CCcEEEEechhh
Q psy450 207 EDIGGLSKLKAEILSTFRGVNR-----TS----GLKRSGLLLYGPPGTGKTLIAKAVATEC-------RMNFLAVKGPEL 270 (478)
Q Consensus 207 ~~i~g~~~~k~~l~~~~~~~~~-----~~----~~~~~~iLl~Gp~GtGKT~la~~la~~~-------~~~~~~v~~~~l 270 (478)
.+++|++++++.+.+.+..+.. .. +..+.++||+||||||||++|+++|+.+ ..+++.+++.++
T Consensus 31 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 31 RELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 3799999999999988876531 11 2235679999999999999999999988 348999999999
Q ss_pred hhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC-
Q psy450 271 LNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD- 349 (478)
Q Consensus 271 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~- 349 (478)
.+.+.|.....+..+|..+ .++||||||+|.+...+++. ......++.|+..++. ...++++|++||.+.
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~----~~~~~~~~~Ll~~l~~--~~~~~~~i~~~~~~~~ 181 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNER----DYGQEAIEILLQVMEN--NRDDLVVILAGYADRM 181 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHH--CTTTCEEEEEECHHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcc----cccHHHHHHHHHHHhc--CCCCEEEEEeCChHHH
Confidence 9999999998888888876 35699999999998654321 1225677888888874 345688888888653
Q ss_pred ----CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCC-HHHHHHhc------CCCCCHHHHHHHHHHH
Q psy450 350 ----LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVS-LDSLVHHF------PSQMSGADIYSICSNA 418 (478)
Q Consensus 350 ----~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~------~~~~sg~di~~l~~~a 418 (478)
.+++++++ ||+..++++. |+.+++..|++.+++..+..-+.+ +..++..+ ...-+++++.+++..|
T Consensus 182 ~~~~~~~~~l~~--R~~~~i~~~~-~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a 258 (309)
T 3syl_A 182 ENFFQSNPGFRS--RIAHHIEFPD-YSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRA 258 (309)
T ss_dssp HHHHHHSTTHHH--HEEEEEEECC-CCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred HHHHhhCHHHHH--hCCeEEEcCC-cCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHH
Confidence 25789999 9999999986 799999999999998765432222 44444432 1223478999999999
Q ss_pred HHHHHHHHHhcC--CCCCCCCccccHHHHHhc
Q psy450 419 WTRAIRRIITSA--PQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 419 ~~~a~~r~~~~~--~~~~~~~~~it~~d~~~A 448 (478)
...+..+..... .....+-..++.+||..+
T Consensus 259 ~~~~~~r~~~~~~~~~~~~~l~~i~~~d~~~~ 290 (309)
T 3syl_A 259 RLRQANRLFTASSGPLDARALSTIAEEDIRAS 290 (309)
T ss_dssp HHHHHHHHHHC---CEEHHHHHEECHHHHHTS
T ss_pred HHHHHHHHHhccCCCCCHHHHhhccHHHhccc
Confidence 999888877531 111122335677777765
No 41
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.82 E-value=4.1e-20 Score=193.47 Aligned_cols=229 Identities=21% Similarity=0.310 Sum_probs=158.4
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh---------
Q psy450 202 PNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN--------- 272 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~--------- 272 (478)
....+++++|++++++.+.+.+.........++.+++|+||||||||++|++++..++.++..+++..+..
T Consensus 76 ~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 76 GRLLDEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp GGTHHHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------------
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHH
Confidence 34446779999999999988776655444445778999999999999999999999999999998866433
Q ss_pred hhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC-------------CCCe
Q psy450 273 KYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT-------------SQDV 339 (478)
Q Consensus 273 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------------~~~v 339 (478)
.+.|.....+...|..+....| |+||||+|.+.+... ....+.|+..++.... ..++
T Consensus 156 ~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~---------~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v 225 (543)
T 3m6a_A 156 TYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR---------GDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKV 225 (543)
T ss_dssp --------CHHHHHHTTCSSSE-EEEEEESSSCC------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSC
T ss_pred HHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc---------cCHHHHHHHHHhhhhcceeecccCCeeecccce
Confidence 4566666677778887766666 999999999986532 1134556666653221 1568
Q ss_pred EEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHH-----hcCCCCC------CCCHHHHHHhcCCCCCH
Q psy450 340 FILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVV-----RKFKLSD------DVSLDSLVHHFPSQMSG 408 (478)
Q Consensus 340 ~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~-----~~~~~~~------~~~~~~la~~~~~~~sg 408 (478)
+||+|||.++.+++++++ ||+ .+.++. |+.+++..|++.++ +..++.. +..+..++..++...+.
T Consensus 226 ~iI~ttN~~~~l~~aL~~--R~~-vi~~~~-~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~v 301 (543)
T 3m6a_A 226 LFIATANNLATIPGPLRD--RME-IINIAG-YTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGV 301 (543)
T ss_dssp EEEEECSSTTTSCHHHHH--HEE-EEECCC-CCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSS
T ss_pred EEEeccCccccCCHHHHh--hcc-eeeeCC-CCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhch
Confidence 999999999999999999 995 688886 68999999998765 2222211 12255666655444556
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 409 ADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 409 ~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
+++++.+..++..+..+..... .....||.+|+.++
T Consensus 302 R~L~~~i~~~~~~aa~~~~~~~----~~~~~It~~~l~~~ 337 (543)
T 3m6a_A 302 RSLERQLAAICRKAAKAIVAEE----RKRITVTEKNLQDF 337 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC----CSCCEECTTTTHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcC----CcceecCHHHHHHH
Confidence 7888888877777776665421 24567999999999
No 42
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.81 E-value=3.9e-19 Score=177.71 Aligned_cols=217 Identities=18% Similarity=0.186 Sum_probs=155.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCC--cEEEEechhhhhhhh---
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRM--NFLAVKGPELLNKYI--- 275 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~--~~~~v~~~~l~~~~~--- 275 (478)
.|...|++++|++.+++.+..+....... ..+++++||+||||||||++|+++++.++. +++.+++..+.+.+.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~~~~-~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMIREG-KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKT 116 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHTT-CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHH
T ss_pred CcCcchhhccChHHHHHHHHHHHHHHHcC-CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchh
Confidence 45666999999999999887766555432 222578999999999999999999999975 788888765332221
Q ss_pred ----------------------------------------------cchHHHHHHHHHHhHh-----C----CCeEEEEc
Q psy450 276 ----------------------------------------------GQSEENIRNVFLKARS-----A----APCVVFFD 300 (478)
Q Consensus 276 ----------------------------------------------g~~~~~~~~~~~~a~~-----~----~p~il~iD 300 (478)
|.....++..+..+.. . .|+|||||
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 1223344445544322 1 26799999
Q ss_pred CCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEc-----------CCCCCCCccccCCCCCCeEEEeCC
Q psy450 301 ELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGAT-----------NRVDLLDPAILRPGRLDKSLYVGL 369 (478)
Q Consensus 301 eid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~tt-----------n~~~~ld~~l~~~~Rf~~~i~~~~ 369 (478)
|+|.+. ....+.|+..++.. ..+++++++. |.+..+++++++ ||.. +.++.
T Consensus 197 Ei~~l~-------------~~~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~~ 258 (368)
T 3uk6_A 197 EVHMLD-------------IESFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTTP 258 (368)
T ss_dssp SGGGSB-------------HHHHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEECC
T ss_pred hccccC-------------hHHHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEecC
Confidence 999986 34567777777643 2345555554 347789999999 9976 78875
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 370 YEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 370 pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
|+.+++..|++..+...+..-+ ..+..++..+ .+.+++++.++|+.|...|..+. ...||.+|+.+|
T Consensus 259 -~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~-~~G~~r~~~~ll~~a~~~A~~~~----------~~~It~~~v~~a 326 (368)
T 3uk6_A 259 -YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIG-LETSLRYAIQLITAASLVCRKRK----------GTEVQVDDIKRV 326 (368)
T ss_dssp -CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHTT----------CSSBCHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhC----------CCCCCHHHHHHH
Confidence 6999999999988876443322 2266677765 43688899999999988876653 557999999999
No 43
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.81 E-value=6.1e-19 Score=171.81 Aligned_cols=233 Identities=17% Similarity=0.261 Sum_probs=159.0
Q ss_pred ccccCcHHHHHHHHHHHHhhhhhC--------CCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh-hhhcc
Q psy450 207 EDIGGLSKLKAEILSTFRGVNRTS--------GLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN-KYIGQ 277 (478)
Q Consensus 207 ~~i~g~~~~k~~l~~~~~~~~~~~--------~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~-~~~g~ 277 (478)
++++|++.+++.+...+..+.... +..+.++||+||||||||++|+++++.++.+++.++++++.. .+.|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 357999999999998887642221 223678999999999999999999999999999999988765 44443
Q ss_pred h-HHHHHHHHHHh-----HhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC--------CCCCeEEEE
Q psy450 278 S-EENIRNVFLKA-----RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH--------TSQDVFILG 343 (478)
Q Consensus 278 ~-~~~~~~~~~~a-----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~v~vI~ 343 (478)
. ...++.++..+ ....++||||||+|.+.+.....+ .......+.+.|+..+++.. ...++++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~-~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~ 173 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSG-ADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 173 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCS-SHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccc-cchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEE
Confidence 2 34456655532 112357999999999987653221 11122234677777777532 234678888
Q ss_pred E----cCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHH----H-------HhcCC----CCCCCCHHHHHHhcC-
Q psy450 344 A----TNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKA----V-------VRKFK----LSDDVSLDSLVHHFP- 403 (478)
Q Consensus 344 t----tn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~----~-------~~~~~----~~~~~~~~~la~~~~- 403 (478)
+ ++.+..+++++++ ||+..+.++. |+.+++..|++. + +...+ ++++ .+..++....
T Consensus 174 ~~~~~~~~~~~l~~~l~~--R~~~~i~~~~-~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~l~~~~~~ 249 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQG--RLPIRVELTA-LSAADFERILTEPHASLTEQYKALMATEGVNIAFTTD-AVKKIAEAAFR 249 (310)
T ss_dssp EECCSSSCGGGSCHHHHH--TCCEEEECCC-CCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHH-HHHHHHHHHHH
T ss_pred cCCcccCCcccCCHHHHh--hCCceEEcCC-cCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHH-HHHHHHHHhhh
Confidence 8 4577889999998 9998899986 789999999982 2 11122 2222 2555665541
Q ss_pred -----CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 404 -----SQMSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 404 -----~~~sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
.+.+.+++.++++.+...+..+.... ......||.+|+.+|
T Consensus 250 ~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~----~~~~~~i~~~~v~~~ 295 (310)
T 1ofh_A 250 VNEKTENIGARRLHTVMERLMDKISFSASDM----NGQTVNIDAAYVADA 295 (310)
T ss_dssp HHHHSCCCTTHHHHHHHHHHSHHHHHHGGGC----TTCEEEECHHHHHHH
T ss_pred hcccccccCcHHHHHHHHHHHHhhhcCCccc----cCCEEEEeeHHHHHH
Confidence 14567888888888876655443211 112335999999999
No 44
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.81 E-value=6e-20 Score=189.10 Aligned_cols=179 Identities=20% Similarity=0.270 Sum_probs=135.7
Q ss_pred HHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch----------hhHhhhccccccccccccchhhhccCCC
Q psy450 19 LLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK----------YVYFKLCSFDSVNVKSNETKDQQCKQQH 88 (478)
Q Consensus 19 ~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r----------~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 88 (478)
+.++|+++... +++.+|. .|...+||||||||+|++++++ .++.|+..||+. ....
T Consensus 274 l~~~~~g~~~~-~~~~~f~-~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~------------~~~~ 339 (489)
T 3hu3_A 274 IMSKLAGESES-NLRKAFE-EAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL------------KQRA 339 (489)
T ss_dssp HHTSCTTHHHH-HHHHHHH-HHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHS------------CTTS
T ss_pred hhhhhcchhHH-HHHHHHH-HHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcc------------ccCC
Confidence 34556655544 8899999 9999999999999999999854 677888888853 3456
Q ss_pred cEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHH
Q psy450 89 KKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVR 159 (478)
Q Consensus 89 ~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~ 159 (478)
.|+||+ +|++++| ||+..++|+.|+.++|.+||+.+++.+ .+..+.++ ..++..+.||+++|+..+|+
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~--~l~~~~~l-~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM--KLADDVDL-EQVANETHGHVGADLAALCS 416 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTS--CBCTTCCH-HHHHHTCTTCCHHHHHHHHH
T ss_pred ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcC--CCcchhhH-HHHHHHccCCcHHHHHHHHH
Confidence 688888 9999999 999999999999999999999999877 55566676 99999999999999999999
Q ss_pred HHHHHHHHhhcC--------------CCCCCCHHHHHHHHHHhhhhcccCCCCCCCCCCCcccccCcHHH
Q psy450 160 LSVKNKMLKQGI--------------NKRDLQKEDFQQIYDDLQSRYSDQLDAPSVPNVSWEDIGGLSKL 215 (478)
Q Consensus 160 ~a~~~a~~~~~~--------------~~~~it~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~ 215 (478)
+|+..+.++... ....++.+||..|++.++|+..+.. ....|+++|+|++|..+.
T Consensus 417 ~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~-~~e~p~v~W~dig~~~~~ 485 (489)
T 3hu3_A 417 EAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRET-VVEVPQVTWEDIGGRSHH 485 (489)
T ss_dssp HHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGG-GC----------------
T ss_pred HHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhcc-cccCCCCCHHHcCCCccc
Confidence 999999865211 1246899999999999999877654 578999999999998653
No 45
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.80 E-value=2.3e-18 Score=170.14 Aligned_cols=212 Identities=15% Similarity=0.193 Sum_probs=155.3
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchH
Q psy450 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSE 279 (478)
Q Consensus 200 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~ 279 (478)
.+.+.+|++++|.+.+++.+...+...... +.++.++||+||||||||++|+++++.++.+++.+++..+. ..
T Consensus 22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------~~ 94 (338)
T 3pfi_A 22 SLRPSNFDGYIGQESIKKNLNVFIAAAKKR-NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------KS 94 (338)
T ss_dssp -CCCCSGGGCCSCHHHHHHHHHHHHHHHHT-TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------SH
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHHhc-CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------ch
Confidence 344568999999999999999888776432 33366799999999999999999999999999999987552 22
Q ss_pred HHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC----------------CCCeEEEE
Q psy450 280 ENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT----------------SQDVFILG 343 (478)
Q Consensus 280 ~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~----------------~~~v~vI~ 343 (478)
..+...+.. ...+++|||||+|.+. ......|+..++.... .+++.+|+
T Consensus 95 ~~~~~~~~~--~~~~~vl~lDEi~~l~-------------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 95 GDLAAILTN--LSEGDILFIDEIHRLS-------------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp HHHHHHHHT--CCTTCEEEEETGGGCC-------------HHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred hHHHHHHHh--ccCCCEEEEechhhcC-------------HHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 334444433 2456899999999986 2345555555554220 12489999
Q ss_pred EcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy450 344 ATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADIYSICSNAWTRA 422 (478)
Q Consensus 344 ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di~~l~~~a~~~a 422 (478)
+||.+..+++++++ ||+..+.++. |+.+++..+++..+...+...+ ..+..++..+ . -+.+++.+++..+...+
T Consensus 160 atn~~~~l~~~L~~--R~~~~i~l~~-~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~-~-G~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 160 ATTRAGMLSNPLRD--RFGMQFRLEF-YKDSELALILQKAALKLNKTCEEKAALEIAKRS-R-STPRIALRLLKRVRDFA 234 (338)
T ss_dssp EESCGGGSCHHHHT--TCSEEEECCC-CCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTT-T-TCHHHHHHHHHHHHHHH
T ss_pred eCCCccccCHHHHh--hcCEEeeCCC-cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-C-cCHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999986 6899999999988877654322 2256666644 3 35678888888776554
Q ss_pred HHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 423 IRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 423 ~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
... ....|+.+++..+
T Consensus 235 ~~~----------~~~~i~~~~~~~~ 250 (338)
T 3pfi_A 235 DVN----------DEEIITEKRANEA 250 (338)
T ss_dssp HHT----------TCSEECHHHHHHH
T ss_pred Hhh----------cCCccCHHHHHHH
Confidence 432 1345788888777
No 46
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.7e-19 Score=175.42 Aligned_cols=156 Identities=14% Similarity=0.217 Sum_probs=127.0
Q ss_pred HhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch----------hhHhhhccccccccccccchhhhccCCCcE
Q psy450 21 TNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK----------YVYFKLCSFDSVNVKSNETKDQQCKQQHKK 90 (478)
Q Consensus 21 ~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r----------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v 90 (478)
++|.++. ...++.+|. .|+..+||||||||+|++++.| .+++++..||++. ....+|
T Consensus 84 ~~~~g~~-~~~~~~lf~-~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~~~v 150 (322)
T 1xwi_A 84 SKWLGES-EKLVKNLFQ-LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG-----------VDNDGI 150 (322)
T ss_dssp CSSCCSC-HHHHHHHHH-HHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS-----------SCCTTE
T ss_pred hhhhhHH-HHHHHHHHH-HHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc-----------ccCCCE
Confidence 3445554 448999999 9999999999999999998754 6788888898642 134668
Q ss_pred EEEe-------eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy450 91 KLVL-------IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVK 163 (478)
Q Consensus 91 ~via-------ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~ 163 (478)
+||| +|++++|||++.+++++|+.++|.+||+.++...+..+ .+.++ +.|++.|+||+|+||..+|++|+.
T Consensus 151 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l-~~la~~t~G~sgadl~~l~~~A~~ 228 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL-TEADF-RELGRKTDGYSGADISIIVRDALM 228 (322)
T ss_dssp EEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC-CHHHH-HHHHHTCTTCCHHHHHHHHHHHHT
T ss_pred EEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHH-HHHHHHcCCCCHHHHHHHHHHHHH
Confidence 8887 99999999999999999999999999999998763222 34455 999999999999999999999999
Q ss_pred HHHHhhc----------------------------------------------CCCCCCCHHHHHHHHHHhhhh
Q psy450 164 NKMLKQG----------------------------------------------INKRDLQKEDFQQIYDDLQSR 191 (478)
Q Consensus 164 ~a~~~~~----------------------------------------------~~~~~it~~d~~~a~~~~~~~ 191 (478)
.++++.. ....+|+++||..|++.++|+
T Consensus 229 ~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps 302 (322)
T 1xwi_A 229 QPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPT 302 (322)
T ss_dssp HHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCS
T ss_pred HHHHHHHhhhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCC
Confidence 8876411 012479999999999988765
No 47
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.79 E-value=1.1e-18 Score=174.23 Aligned_cols=235 Identities=19% Similarity=0.313 Sum_probs=161.4
Q ss_pred cccCcHHHHHHHHHHHHhhhhh---------CCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhh-hhcc
Q psy450 208 DIGGLSKLKAEILSTFRGVNRT---------SGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK-YIGQ 277 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~~~~---------~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~-~~g~ 277 (478)
.++|++.+++.+...+...... ...++.++||+||||||||++|+++|+.++.+|+.++++++... +.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3689999999999887543211 11236789999999999999999999999999999999988743 6776
Q ss_pred h-HHHHHHHHHHh----HhCCCeEEEEcCCccccCCCCCCCCCchh-HHHHHHHHHHhhcCCC-----------------
Q psy450 278 S-EENIRNVFLKA----RSAAPCVVFFDELDSLAPRRGQEDQSSGV-MDRVVSQLLAEMDGVH----------------- 334 (478)
Q Consensus 278 ~-~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~-~~~~~~~ll~~l~~~~----------------- 334 (478)
. ...+..++..+ ....++||||||+|.+.+.+.+.+..... ...+++.|+..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 55667777665 33456899999999999776543322222 2347888888888421
Q ss_pred --CCCCeEEEEEcCCC----------CC-----------------------------------CCccccCCCCCCeEEEe
Q psy450 335 --TSQDVFILGATNRV----------DL-----------------------------------LDPAILRPGRLDKSLYV 367 (478)
Q Consensus 335 --~~~~v~vI~ttn~~----------~~-----------------------------------ld~~l~~~~Rf~~~i~~ 367 (478)
...++++|+++|.. .. +.++|+. ||+..+.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 12345566665532 11 6788887 99998888
Q ss_pred CCCCCHHHHHHHHHH----HHh-------cCCCC---CCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy450 368 GLYEDRISQLGVLKA----VVR-------KFKLS---DDVSLDSLVHH-FPSQMSGADIYSICSNAWTRAIRRIITSAPQ 432 (478)
Q Consensus 368 ~~pp~~~~r~~il~~----~~~-------~~~~~---~~~~~~~la~~-~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~ 432 (478)
.. ++.+++.+|+.. +++ ..+.. .+.-++.|+.+ +...+.+++|++++..+...++.+.....
T Consensus 254 ~p-l~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~-- 330 (363)
T 3hws_A 254 NE-LSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSME-- 330 (363)
T ss_dssp CC-CCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCC--
T ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhccccc--
Confidence 75 799999998875 221 11221 11125566653 33456678999999999988887653221
Q ss_pred CCCCCccccHHHHHhc
Q psy450 433 VKSAPVIVTMDDFLGA 448 (478)
Q Consensus 433 ~~~~~~~it~~d~~~A 448 (478)
......||.+++.+.
T Consensus 331 -~~~~~~I~~~~v~~~ 345 (363)
T 3hws_A 331 -DVEKVVIDESVIDGQ 345 (363)
T ss_dssp -CSEEEECHHHHTTCC
T ss_pred -CCceeEEcHHHHhCc
Confidence 113456889898887
No 48
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.79 E-value=2.6e-18 Score=164.48 Aligned_cols=205 Identities=17% Similarity=0.231 Sum_probs=136.0
Q ss_pred CcccccCcHHHHHHHHHH----HHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhh-hhcchH
Q psy450 205 SWEDIGGLSKLKAEILST----FRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK-YIGQSE 279 (478)
Q Consensus 205 ~~~~i~g~~~~k~~l~~~----~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~-~~g~~~ 279 (478)
..+.++|.+...+.+... ..........++.++||+||||||||++|+++++.++.+++.+++++.... ..+...
T Consensus 31 ~~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~ 110 (272)
T 1d2n_A 31 IMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKC 110 (272)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHH
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHH
Confidence 345678887776666653 222222223347889999999999999999999999999999988653211 112223
Q ss_pred HHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC-CCCeEEEEEcCCCCCCCc-cccC
Q psy450 280 ENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT-SQDVFILGATNRVDLLDP-AILR 357 (478)
Q Consensus 280 ~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~v~vI~ttn~~~~ld~-~l~~ 357 (478)
..++.+|..+....+++|+|||+|.+.+.+..+... ...+++.|...+++... ..+++||+|||.++.+++ .+++
T Consensus 111 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~---~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~ 187 (272)
T 1d2n_A 111 QAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRF---SNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN 187 (272)
T ss_dssp HHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBC---CHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT
T ss_pred HHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhH---HHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc
Confidence 567788888887788999999999997655322221 24566666667766543 346889999999988877 5666
Q ss_pred CCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCC----CHHHHHHHHHHHH
Q psy450 358 PGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQM----SGADIYSICSNAW 419 (478)
Q Consensus 358 ~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~----sg~di~~l~~~a~ 419 (478)
||...+.+|.+..+++...++. ....++ +..+..++..+ .|| +.+++.+++..|.
T Consensus 188 --rf~~~i~~p~l~~r~~i~~i~~---~~~~~~-~~~~~~l~~~~-~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 188 --AFSTTIHVPNIATGEQLLEALE---LLGNFK-DKERTTIAQQV-KGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp --TSSEEEECCCEEEHHHHHHHHH---HHTCSC-HHHHHHHHHHH-TTSEEEECHHHHHHHHHHHT
T ss_pred --ccceEEcCCCccHHHHHHHHHH---hcCCCC-HHHHHHHHHHh-cCCCccccHHHHHHHHHHHh
Confidence 9999998875333344444443 333332 33477777776 566 4455555555443
No 49
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.79 E-value=1.2e-18 Score=171.01 Aligned_cols=160 Identities=13% Similarity=0.204 Sum_probs=130.0
Q ss_pred HHHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch----------hhHhhhccccccccccccchhhhccCC
Q psy450 18 HLLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK----------YVYFKLCSFDSVNVKSNETKDQQCKQQ 87 (478)
Q Consensus 18 ~~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r----------~~~~~l~~~d~~~~~~~~~~~~~~~~~ 87 (478)
.+.++|+++... .++.+|+ .|+..+|+||||||+|++++.| .++.++..||++. ...
T Consensus 86 ~l~~~~~g~~~~-~~~~~f~-~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~ 152 (322)
T 3eie_A 86 DLVSKWMGESEK-LVKQLFA-MARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG-----------NDS 152 (322)
T ss_dssp HHHTTTGGGHHH-HHHHHHH-HHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG-----------TSC
T ss_pred HHhhcccchHHH-HHHHHHH-HHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc-----------ccC
Confidence 345566665554 8999999 9999999999999999998754 5788888888642 234
Q ss_pred CcEEEEe-------eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHH
Q psy450 88 HKKKLVL-------IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRL 160 (478)
Q Consensus 88 ~~v~via-------ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~ 160 (478)
.+|+||| +|++++|||+..+++++|+.++|.+||+.++... +...+...++.++..|+||+|+||..+|++
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~--~~~~~~~~l~~la~~t~g~sg~di~~l~~~ 230 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDT--PCVLTKEDYRTLGAMTEGYSGSDIAVVVKD 230 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTC--CCCCCHHHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccC--CCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5688887 9999999999999999999999999999999876 333333334999999999999999999999
Q ss_pred HHHHHHHhhc----------------------------------------CCCCCCCHHHHHHHHHHhhhhc
Q psy450 161 SVKNKMLKQG----------------------------------------INKRDLQKEDFQQIYDDLQSRY 192 (478)
Q Consensus 161 a~~~a~~~~~----------------------------------------~~~~~it~~d~~~a~~~~~~~~ 192 (478)
|+..++++.. ....+|+.+||..|++.++|+.
T Consensus 231 a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~ 302 (322)
T 3eie_A 231 ALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 302 (322)
T ss_dssp HTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCC
Confidence 9998876410 0125699999999999888764
No 50
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.78 E-value=8e-19 Score=167.94 Aligned_cols=151 Identities=17% Similarity=0.215 Sum_probs=121.0
Q ss_pred chhhhhHHHHhhhhcCCCeEEEecccccccch----------hhHhhhccccccccccccchhhhccCCCcEEEEe----
Q psy450 29 YHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK----------YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL---- 94 (478)
Q Consensus 29 ~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r----------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via---- 94 (478)
..+++.+|+ .++...|||+|+||+|.++..| .+++++.+||+. .....++++|
T Consensus 89 ~~~i~~vf~-~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg------------~~~~~~i~ia~tn~ 155 (274)
T 2x8a_A 89 ERAVRQVFQ-RAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGL------------EARQQVFIMAATNR 155 (274)
T ss_dssp HHHHHHHHH-HHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTC------------CSTTCEEEEEEESC
T ss_pred HHHHHHHHH-HHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcc------------cccCCEEEEeecCC
Confidence 457899999 8988899999999999998654 456677777743 4556677777
Q ss_pred ---eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhc-CCCCCCChhHHHHHHHhc--CCCCHHHHHHHHHHHHHHHH
Q psy450 95 ---IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCL-GGDYGFDASLVEYLSSVT--SGFERHDLTCLVRLSVKNKM 166 (478)
Q Consensus 95 ---ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~-~~~~~~~~~~i~~la~~t--~G~s~~di~~l~~~a~~~a~ 166 (478)
+|||++| |||+.|++++||.++|.+||+.+++.. ..++..++++ +.+|..| +||||+||..+|++|+..++
T Consensus 156 p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~sgadl~~l~~~a~~~a~ 234 (274)
T 2x8a_A 156 PDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNL-EAIAGDLRCDCYTGADLSALVREASICAL 234 (274)
T ss_dssp GGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCH-HHHHTCSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred hhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCH-HHHHHhhccCCcCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999998542 1244567787 9999875 59999999999999999987
Q ss_pred Hhhc--------CCCCCCCHHHHHHHHHHhhhhcc
Q psy450 167 LKQG--------INKRDLQKEDFQQIYDDLQSRYS 193 (478)
Q Consensus 167 ~~~~--------~~~~~it~~d~~~a~~~~~~~~~ 193 (478)
++.. .+...|+++||..|+..++|+..
T Consensus 235 ~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~~ 269 (274)
T 2x8a_A 235 RQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSIS 269 (274)
T ss_dssp HHHC-----------CCBCHHHHHHHHTTCCCCC-
T ss_pred HHHHhhccccccccCCeecHHHHHHHHHHhcCCCC
Confidence 6421 12457999999999999988654
No 51
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.77 E-value=3e-18 Score=170.26 Aligned_cols=159 Identities=13% Similarity=0.216 Sum_probs=125.2
Q ss_pred HHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch----------hhHhhhccccccccccccchhhhccCCC
Q psy450 19 LLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK----------YVYFKLCSFDSVNVKSNETKDQQCKQQH 88 (478)
Q Consensus 19 ~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r----------~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 88 (478)
++++|++... ..++.+|. .|+..+|+||||||+|++++.| .++++|..||++. ....
T Consensus 120 l~~~~~g~~~-~~~~~~f~-~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~ 186 (355)
T 2qp9_X 120 LVSKWMGESE-KLVKQLFA-MARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG-----------NDSQ 186 (355)
T ss_dssp HHSCC---CH-HHHHHHHH-HHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC--------------C
T ss_pred HhhhhcchHH-HHHHHHHH-HHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc-----------ccCC
Confidence 4455655554 48999999 9999999999999999999753 5788888888642 2245
Q ss_pred cEEEEe-------eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHH
Q psy450 89 KKKLVL-------IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLS 161 (478)
Q Consensus 89 ~v~via-------ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a 161 (478)
+|+||| +|++++|||+..+++++|+.++|.+||+.++...+..+ .+.++ +.|+..|+||+|+||..+|++|
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~-~~~~l-~~la~~t~G~sg~dl~~l~~~A 264 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL-TKEDY-RTLGAMTEGYSGSDIAVVVKDA 264 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC-CHHHH-HHHHHHTTTCCHHHHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC-CHHHH-HHHHHHcCCCCHHHHHHHHHHH
Confidence 688887 89999999999999999999999999999998763222 34455 9999999999999999999999
Q ss_pred HHHHHHhhc----------------------------------------CCCCCCCHHHHHHHHHHhhhhc
Q psy450 162 VKNKMLKQG----------------------------------------INKRDLQKEDFQQIYDDLQSRY 192 (478)
Q Consensus 162 ~~~a~~~~~----------------------------------------~~~~~it~~d~~~a~~~~~~~~ 192 (478)
+..++++.. ....+|+.+||..|+..++|+.
T Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~ 335 (355)
T 2qp9_X 265 LMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 335 (355)
T ss_dssp HHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCC
Confidence 999876410 0124699999999999987763
No 52
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.76 E-value=2.7e-19 Score=180.27 Aligned_cols=162 Identities=19% Similarity=0.273 Sum_probs=78.0
Q ss_pred ccccCcHHHHHHHHHHHHhhhhhC--------CCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh-hhhcc
Q psy450 207 EDIGGLSKLKAEILSTFRGVNRTS--------GLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN-KYIGQ 277 (478)
Q Consensus 207 ~~i~g~~~~k~~l~~~~~~~~~~~--------~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~-~~~g~ 277 (478)
++++|++++|+.+...+..+..+. ..+++++||+||||||||++|+++|+.++.+++.++++.+.+ .|.|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 468999999999998887663221 123688999999999999999999999999999999999887 58885
Q ss_pred -hHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEE-cCCCCCCCccc
Q psy450 278 -SEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGA-TNRVDLLDPAI 355 (478)
Q Consensus 278 -~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~t-tn~~~~ld~~l 355 (478)
.+..++.+|..+... +++||++.+.... .....++++++|+..||++.....+ +++ ||+|+.+|++|
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~-----~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL 163 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA-----EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKL 163 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc-----hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHH
Confidence 788999999988765 3488888775332 2334478999999999998665554 454 99999999999
Q ss_pred cCCCCCCeEEEeCCCCCHH-HHHHHH
Q psy450 356 LRPGRLDKSLYVGLYEDRI-SQLGVL 380 (478)
Q Consensus 356 ~~~~Rf~~~i~~~~pp~~~-~r~~il 380 (478)
+|+||||+.|++++| +.. .|.+|+
T Consensus 164 ~rggr~D~~i~i~lP-~~~~~~~ei~ 188 (444)
T 1g41_A 164 REGQLDDKEIEIDVS-AGVSMGVEIM 188 (444)
T ss_dssp --------------------------
T ss_pred HcCCCcceEEEEcCC-CCccchhhhh
Confidence 999999999999995 554 577775
No 53
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.76 E-value=3.9e-18 Score=165.72 Aligned_cols=156 Identities=17% Similarity=0.263 Sum_probs=128.4
Q ss_pred HHHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhhcc
Q psy450 19 LLTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQCK 85 (478)
Q Consensus 19 ~~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~~~ 85 (478)
++++|+++... .++.+|. .|+..+||||||||+|+++..+ .++++|..||++ .
T Consensus 85 l~~~~~g~~~~-~~~~~f~-~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~------------~ 150 (301)
T 3cf0_A 85 LLTMWFGESEA-NVREIFD-KARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM------------S 150 (301)
T ss_dssp HHHHHHTTCTT-HHHHHHH-HHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS------------C
T ss_pred HHhhhcCchHH-HHHHHHH-HHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc------------c
Confidence 34566666655 8999999 9999999999999999998654 468888888854 3
Q ss_pred CCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHH
Q psy450 86 QQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTC 156 (478)
Q Consensus 86 ~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~ 156 (478)
...+|+||+ +|++++| ||++.++|+.|+.++|.+||+.+++.. .+..++++ +.++..|+||+|+||++
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~--~~~~~~~~-~~la~~~~g~sg~dl~~ 227 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS--PVAKDVDL-EFLAKMTNGFSGADLTE 227 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--CBCSSCCH-HHHHHTCSSCCHHHHHH
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccC--CCCccchH-HHHHHHcCCCCHHHHHH
Confidence 345688888 8999999 999999999999999999999999877 44566777 99999999999999999
Q ss_pred HHHHHHHHHHHhhc----------------------CCCCCCCHHHHHHHHHHhhhh
Q psy450 157 LVRLSVKNKMLKQG----------------------INKRDLQKEDFQQIYDDLQSR 191 (478)
Q Consensus 157 l~~~a~~~a~~~~~----------------------~~~~~it~~d~~~a~~~~~~~ 191 (478)
+|++|+..+..+.. .....++.+||..|++..+|+
T Consensus 228 l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s 284 (301)
T 3cf0_A 228 ICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 284 (301)
T ss_dssp HHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCC
Confidence 99999998864310 012578999999999988664
No 54
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.76 E-value=2.2e-17 Score=161.92 Aligned_cols=212 Identities=17% Similarity=0.224 Sum_probs=148.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHH
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEE 280 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~ 280 (478)
+.+.+|++++|.+.+++.+...+...... +..+.+++|+||||||||++|+++++.++.+++.++++.+.. ..
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------~~ 78 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKAR-KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PG 78 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHHH-CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------HH
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHcc-CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------hH
Confidence 44568999999999999999888765432 223567999999999999999999999999999999876521 22
Q ss_pred HHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC----------------CCCCeEEEEE
Q psy450 281 NIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH----------------TSQDVFILGA 344 (478)
Q Consensus 281 ~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~v~vI~t 344 (478)
.+...+..+ ...+++|||||+|.+.. .....++..++... ...++.+|++
T Consensus 79 ~l~~~l~~~-~~~~~~l~lDEi~~l~~-------------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~ 144 (324)
T 1hqc_A 79 DLAAILANS-LEEGDILFIDEIHRLSR-------------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGA 144 (324)
T ss_dssp HHHHHHTTT-CCTTCEEEETTTTSCCH-------------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEE
T ss_pred HHHHHHHHh-ccCCCEEEEECCccccc-------------chHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEe
Confidence 333333221 24567999999999862 23334444443211 1135789999
Q ss_pred cCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q psy450 345 TNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADIYSICSNAWTRAI 423 (478)
Q Consensus 345 tn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di~~l~~~a~~~a~ 423 (478)
||.+..+++++.+ ||+..+.++. |+.+++..+++.++...+..-+ ..+..++..+ .| +.+++.++++.+...+.
T Consensus 145 t~~~~~~~~~l~~--R~~~~i~l~~-~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~G-~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 145 TTRPGLITAPLLS--RFGIVEHLEY-YTPEELAQGVMRDARLLGVRITEEAALEIGRRS-RG-TMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp ESCCSSCSCSTTT--TCSCEEECCC-CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHS-CS-CHHHHHHHHHHHTTTST
T ss_pred CCCcccCCHHHHh--cccEEEecCC-CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-cC-CHHHHHHHHHHHHHHHH
Confidence 9999999999998 9988999986 6889999999988876554322 2266677775 44 45677777776653332
Q ss_pred HHHHhcCCCCCCCCccccHHHHHhc
Q psy450 424 RRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 424 ~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
. .....|+.+++..+
T Consensus 220 ~----------~~~~~i~~~~~~~~ 234 (324)
T 1hqc_A 220 V----------AGEEVITRERALEA 234 (324)
T ss_dssp T----------TSCSCCCHHHHHHH
T ss_pred H----------hcCCCCCHHHHHHH
Confidence 1 11335777777666
No 55
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.75 E-value=5.2e-18 Score=173.50 Aligned_cols=134 Identities=16% Similarity=0.256 Sum_probs=107.6
Q ss_pred HHhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch----------hhHhhhccccccccccccchhhhccCCCc
Q psy450 20 LTNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK----------YVYFKLCSFDSVNVKSNETKDQQCKQQHK 89 (478)
Q Consensus 20 ~~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r----------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 89 (478)
++.|.+.... .++.+|. .++..+|+||||||+|++++.| .++++|..||++. ....+
T Consensus 205 ~~~~~g~~~~-~~~~~f~-~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~-----------~~~~~ 271 (444)
T 2zan_A 205 VSKWLGESEK-LVKNLFQ-LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG-----------VDNDG 271 (444)
T ss_dssp -------CCC-THHHHHH-HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS-----------CCCSS
T ss_pred HhhhcchHHH-HHHHHHH-HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc-----------cCCCC
Confidence 3455555544 8999999 9999999999999999997653 6788999999642 12456
Q ss_pred EEEEe-------eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy450 90 KKLVL-------IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSV 162 (478)
Q Consensus 90 v~via-------ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~ 162 (478)
|+||| +|++++|||++.+++++|+.++|.+||+.++...+..+ .+.++ +.|+..|+||+|+||..+|++|+
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l-~~la~~t~G~sgadl~~l~~~a~ 349 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL-TEADF-QELGRKTDGYSGADISIIVRDAL 349 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC-CHHHH-HHHHHHTTTCCHHHHHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHH-HHHHHHcCCCCHHHHHHHHHHHH
Confidence 88887 99999999999999999999999999999997763222 34555 99999999999999999999999
Q ss_pred HHHHHh
Q psy450 163 KNKMLK 168 (478)
Q Consensus 163 ~~a~~~ 168 (478)
..++++
T Consensus 350 ~~a~r~ 355 (444)
T 2zan_A 350 MQPVRK 355 (444)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 988764
No 56
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.75 E-value=2.7e-17 Score=167.94 Aligned_cols=217 Identities=14% Similarity=0.230 Sum_probs=143.8
Q ss_pred CCCCCCCccccc-CcHH--HHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh-----CCcEEEEechhh
Q psy450 199 PSVPNVSWEDIG-GLSK--LKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC-----RMNFLAVKGPEL 270 (478)
Q Consensus 199 ~~~~~~~~~~i~-g~~~--~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~-----~~~~~~v~~~~l 270 (478)
.-.|..+|++++ |... ....+..... .++. +.+++|+||||||||++|+++++.+ +.+++++++.++
T Consensus 97 ~l~~~~tfd~fv~g~~n~~a~~~~~~~a~----~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 97 PLNPDYTFENFVVGPGNSFAYHAALEVAK----HPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp CCCTTCSGGGCCCCTTTHHHHHHHHHHHH----STTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCCCCCChhhcCCCCchHHHHHHHHHHHh----CCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 345677899987 5333 3333333322 2232 6679999999999999999999988 888999999887
Q ss_pred hhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC
Q psy450 271 LNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDL 350 (478)
Q Consensus 271 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ 350 (478)
...+.+.........|.......+++|+|||++.+.++. .....++..++.....+..+|++|.+.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~-----------~~q~~l~~~l~~l~~~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 172 LNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT-----------GVQTELFHTFNELHDSGKQIVICSDREPQK 240 (440)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH-----------HHHHHHHHHHHHHHTTTCEEEEEESSCGGG
T ss_pred HHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh-----------HHHHHHHHHHHHHHHCCCeEEEEECCCHHH
Confidence 655443322221223333333367899999999997431 122333333333223445566655555544
Q ss_pred ---CCccccCCCCCC--eEEEeCCCCCHHHHHHHHHHHHhcC--CCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q psy450 351 ---LDPAILRPGRLD--KSLYVGLYEDRISQLGVLKAVVRKF--KLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAI 423 (478)
Q Consensus 351 ---ld~~l~~~~Rf~--~~i~~~~pp~~~~r~~il~~~~~~~--~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~ 423 (478)
+++.+++ ||. ..+.++. |+.+++..|++..+... .+++++ +..++..+ +-+.+++..++..+...|.
T Consensus 241 l~~l~~~L~s--R~~~g~~i~l~~-p~~e~r~~iL~~~~~~~~~~i~~e~-l~~la~~~--~gn~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 241 LSEFQDRLVS--RFQMGLVAKLEP-PDEETRKSIARKMLEIEHGELPEEV-LNFVAENV--DDNLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp CSSCCHHHHH--HHHSSBCCBCCC-CCHHHHHHHHHHHHHHHTCCCCTTH-HHHHHHHC--CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--hccCCeEEEeCC-CCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhc--CCCHHHHHHHHHHHHHHHH
Confidence 7899998 886 5667765 79999999998887643 344443 77788776 3477899998888876654
Q ss_pred HHHHhcCCCCCCCCccccHHHHHhc
Q psy450 424 RRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 424 ~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
.. ...||.+++.++
T Consensus 315 ~~-----------~~~It~~~~~~~ 328 (440)
T 2z4s_A 315 TT-----------GKEVDLKEAILL 328 (440)
T ss_dssp HS-----------SSCCCHHHHHHH
T ss_pred Hh-----------CCCCCHHHHHHH
Confidence 21 235899999988
No 57
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.74 E-value=1.3e-17 Score=167.43 Aligned_cols=219 Identities=18% Similarity=0.153 Sum_probs=149.7
Q ss_pred CcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---------CCcEEEEechhhhhh--
Q psy450 205 SWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---------RMNFLAVKGPELLNK-- 273 (478)
Q Consensus 205 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---------~~~~~~v~~~~l~~~-- 273 (478)
..++++|.++.++.+...+..... +..+.+++|+||||||||++++++++.+ +.+++++++....+.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 348899999999999887755422 2236789999999999999999999988 788999997643211
Q ss_pred --------------hhcchHHH-HHHHHHHhHh-CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCC
Q psy450 274 --------------YIGQSEEN-IRNVFLKARS-AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQ 337 (478)
Q Consensus 274 --------------~~g~~~~~-~~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 337 (478)
..|.+... ...++..... ..|++|+|||+|.+...+ .....+..++..++......
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~--------~~~~~l~~l~~~~~~~~~~~ 166 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP--------GGQDLLYRITRINQELGDRV 166 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST--------THHHHHHHHHHGGGCC----
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC--------CCChHHHhHhhchhhcCCCc
Confidence 01222222 3444444433 347899999999997431 01456777777666432255
Q ss_pred CeEEEEEcCCC---CCCCccccCCCCCCe-EEEeCCCCCHHHHHHHHHHHHhc----CCCCCCCCHHHHHHhcCCC--CC
Q psy450 338 DVFILGATNRV---DLLDPAILRPGRLDK-SLYVGLYEDRISQLGVLKAVVRK----FKLSDDVSLDSLVHHFPSQ--MS 407 (478)
Q Consensus 338 ~v~vI~ttn~~---~~ld~~l~~~~Rf~~-~i~~~~pp~~~~r~~il~~~~~~----~~~~~~~~~~~la~~~~~~--~s 407 (478)
++.+|++||.+ +.+++.+.+ ||.. .+.++. ++.++...|++..+.. ..++.+ .+..++..+ .. -.
T Consensus 167 ~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~-l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~l~~~~-~~~~G~ 241 (387)
T 2v1u_A 167 WVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPP-YTAPQLRDILETRAEEAFNPGVLDPD-VVPLCAALA-AREHGD 241 (387)
T ss_dssp -CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCC-CCHHHHHHHHHHHHHHHBCTTTBCSS-HHHHHHHHH-HSSSCC
T ss_pred eEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCC-CCHHHHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH-HHhccC
Confidence 78899999988 678899998 9986 777874 7899999999888764 223332 255666655 31 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 408 GADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 408 g~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
.+.+.++|+.|+..|..+ ....||.+|+.+|
T Consensus 242 ~r~~~~~l~~a~~~a~~~----------~~~~i~~~~v~~a 272 (387)
T 2v1u_A 242 ARRALDLLRVAGEIAERR----------REERVRREHVYSA 272 (387)
T ss_dssp HHHHHHHHHHHHHHHHHT----------TCSCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc----------CCCCcCHHHHHHH
Confidence 556778888887655432 2457999999999
No 58
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.72 E-value=2.4e-17 Score=168.33 Aligned_cols=145 Identities=18% Similarity=0.205 Sum_probs=123.5
Q ss_pred cchhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhhccCCCcEEEEe
Q psy450 28 RYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL 94 (478)
Q Consensus 28 ~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via 94 (478)
...+++.+|. .|+..+||||||||+|++++.| .++++|.+||++ ....+|+||+
T Consensus 93 ~~~~~r~lf~-~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~------------~~~~~viVIa 159 (476)
T 2ce7_A 93 GAARVRDLFA-QAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF------------DSKEGIIVMA 159 (476)
T ss_dssp HHHHHHHHHH-HHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS------------CGGGTEEEEE
T ss_pred cHHHHHHHHH-HHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc------------CCCCCEEEEE
Confidence 4458899999 9999999999999999998754 578888888854 3345688888
Q ss_pred -------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy450 95 -------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNK 165 (478)
Q Consensus 95 -------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a 165 (478)
+||+++| ||++.|.|+.|+.++|.+||+.+++.. ++..++++ ..++..|+||+|+||.++|++|+..+
T Consensus 160 aTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~--~l~~~v~l-~~la~~t~G~sgadL~~lv~~Aal~A 236 (476)
T 2ce7_A 160 ATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK--PLAEDVNL-EIIAKRTPGFVGADLENLVNEAALLA 236 (476)
T ss_dssp EESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCH-HHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred ecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC--CCcchhhH-HHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999999877 55666777 88999999999999999999999988
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHhhhh
Q psy450 166 MLKQGINKRDLQKEDFQQIYDDLQSR 191 (478)
Q Consensus 166 ~~~~~~~~~~it~~d~~~a~~~~~~~ 191 (478)
.++ +...|+.+||..++..+.+.
T Consensus 237 ~~~---~~~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 237 ARE---GRDKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp HHT---TCSSBCHHHHHHHHHHHC--
T ss_pred HHc---CCCeecHHHHHHHHHHHhcC
Confidence 754 45689999999999988643
No 59
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.72 E-value=9.4e-17 Score=157.64 Aligned_cols=198 Identities=14% Similarity=0.229 Sum_probs=129.3
Q ss_pred CCCCCccccc-C--cHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhh
Q psy450 201 VPNVSWEDIG-G--LSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKY 274 (478)
Q Consensus 201 ~~~~~~~~i~-g--~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~ 274 (478)
.|..+|++++ | .......+...+..+ +..+.+++|+||||||||++++++++.+ +.+++++++.++...+
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~----~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~ 80 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL----GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAM 80 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT----TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc----CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHH
Confidence 4667899987 4 344444444444332 2236679999999999999999999998 8999999998876655
Q ss_pred hcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC---CC
Q psy450 275 IGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD---LL 351 (478)
Q Consensus 275 ~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~---~l 351 (478)
.+.........|.... ..+++|||||++.+.+++ .....++..++.....+..+|+++++.|. .+
T Consensus 81 ~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~-----------~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l 148 (324)
T 1l8q_A 81 VEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE-----------RTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGV 148 (324)
T ss_dssp HHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH-----------HHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTS
T ss_pred HHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh-----------HHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHh
Confidence 4433322222333322 236799999999987421 12223333333222334567777777665 58
Q ss_pred CccccCCCCCC--eEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy450 352 DPAILRPGRLD--KSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADIYSICSNAWTR 421 (478)
Q Consensus 352 d~~l~~~~Rf~--~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di~~l~~~a~~~ 421 (478)
++++++ ||. ..+.++ | +.+++..|++..+...++.-+ ..+..++..+ -+.+++.+++..+...
T Consensus 149 ~~~L~s--R~~~~~~i~l~-~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~---g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 149 SDRLVS--RFEGGILVEIE-L-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT---KNVREIEGKIKLIKLK 214 (324)
T ss_dssp CHHHHH--HHHTSEEEECC-C-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC---SSHHHHHHHHHHHHHH
T ss_pred hhHhhh--cccCceEEEeC-C-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC---CCHHHHHHHHHHHHHc
Confidence 899998 886 445554 4 899999999998875544322 2266667664 3567787877776654
No 60
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.72 E-value=3.5e-17 Score=164.15 Aligned_cols=233 Identities=18% Similarity=0.264 Sum_probs=146.8
Q ss_pred cccCcHHHHHHHHHHHHhhhh------------------------hCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEE
Q psy450 208 DIGGLSKLKAEILSTFRGVNR------------------------TSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFL 263 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~~~------------------------~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~ 263 (478)
.++|++.+|+.|...+..... .....+.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 579999999999887732211 11123668999999999999999999999999999
Q ss_pred EEechhhh-hhhhcch-HHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCch-hHHHHHHHHHHhhcCCC--
Q psy450 264 AVKGPELL-NKYIGQS-EENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSG-VMDRVVSQLLAEMDGVH-- 334 (478)
Q Consensus 264 ~v~~~~l~-~~~~g~~-~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~-~~~~~~~~ll~~l~~~~-- 334 (478)
.+++..+. ..+.|.. ...+...+..+. ...++||||||+|.+...+++...... ....+.+.|+..+++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998765 3344543 444555555432 235689999999999876432111111 11236777888777531
Q ss_pred -----------------CCCCeEEEEEcCCC-----------------------------------------CCCCcccc
Q psy450 335 -----------------TSQDVFILGATNRV-----------------------------------------DLLDPAIL 356 (478)
Q Consensus 335 -----------------~~~~v~vI~ttn~~-----------------------------------------~~ld~~l~ 356 (478)
...++++|+++|.. ..+.+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 12456778877620 12456777
Q ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHH----HHh-----------cCCCCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHH
Q psy450 357 RPGRLDKSLYVGLYEDRISQLGVLKA----VVR-----------KFKLSDDVSLDSLVHHF-PSQMSGADIYSICSNAWT 420 (478)
Q Consensus 357 ~~~Rf~~~i~~~~pp~~~~r~~il~~----~~~-----------~~~~~~~~~~~~la~~~-~~~~sg~di~~l~~~a~~ 420 (478)
+ ||+..+.++. .+.++...|+.. +++ .+.++.+ -+..++.+. +.....+++.+++..++.
T Consensus 262 ~--R~~~~i~~~~-l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~l~~~~~~~~~~~R~L~~~le~~~~ 337 (376)
T 1um8_A 262 G--RLPVLSTLDS-ISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEE-AIKEIAQLALERKTGARGLRAIIEDFCL 337 (376)
T ss_dssp T--TCCEEEECCC-CCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHH-HHHHHHHHHHHTTCTGGGHHHHHHHHHH
T ss_pred c--CCCceeeccC-CCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHH-HHHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 7 9988888875 788888888862 211 1112222 256666653 223567899999999988
Q ss_pred HHHHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 421 RAIRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 421 ~a~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
.++.+..... .....||.+++.++
T Consensus 338 ~~~~~~~~~~----~~~~~i~~~~v~~~ 361 (376)
T 1um8_A 338 DIMFDLPKLK----GSEVRITKDCVLKQ 361 (376)
T ss_dssp HHHHTGGGGT----TSEEEECHHHHTTS
T ss_pred HHHhhccCCC----CCEEEEeHHHhcCC
Confidence 8887764321 23456999999988
No 61
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.72 E-value=9.6e-17 Score=159.08 Aligned_cols=216 Identities=19% Similarity=0.202 Sum_probs=132.6
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCC-------c-----------
Q psy450 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRM-------N----------- 261 (478)
Q Consensus 200 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~-------~----------- 261 (478)
..+..+|++++|++.+++.+........ ..++||+||||||||++|+++++.++. +
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 90 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPD 90 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCT
T ss_pred CCCCCCchhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccc
Confidence 3467789999999998776543332211 446999999999999999999998863 1
Q ss_pred ---------------EEEEechhhhhhhhcchHHHHHHHHHHh---------HhCCCeEEEEcCCccccCCCCCCCCCch
Q psy450 262 ---------------FLAVKGPELLNKYIGQSEENIRNVFLKA---------RSAAPCVVFFDELDSLAPRRGQEDQSSG 317 (478)
Q Consensus 262 ---------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a---------~~~~p~il~iDeid~l~~~~~~~~~~~~ 317 (478)
++.+..........|... +...+... ....+++|||||+|.+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~---------- 158 (350)
T 1g8p_A 91 WATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLED---------- 158 (350)
T ss_dssp TCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH----------
T ss_pred hhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhCCH----------
Confidence 221111100111111100 01112111 112357999999999863
Q ss_pred hHHHHHHHHHHhhcCC----CC-------CCCeEEEEEcCCCC-CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHH-
Q psy450 318 VMDRVVSQLLAEMDGV----HT-------SQDVFILGATNRVD-LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVV- 384 (478)
Q Consensus 318 ~~~~~~~~ll~~l~~~----~~-------~~~v~vI~ttn~~~-~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~- 384 (478)
...+.|+..++.- .. ..++++|+|||... .+++++++ ||+..+.++.|++.+++.+|++..+
T Consensus 159 ---~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~~ 233 (350)
T 1g8p_A 159 ---HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRDT 233 (350)
T ss_dssp ---HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHHh
Confidence 3445555554421 11 13688999999744 79999999 9998899998668888878886521
Q ss_pred ------------------------------hcCCCCCCCCHHHHHHhcCC-CC-CHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy450 385 ------------------------------RKFKLSDDVSLDSLVHHFPS-QM-SGADIYSICSNAWTRAIRRIITSAPQ 432 (478)
Q Consensus 385 ------------------------------~~~~~~~~~~~~~la~~~~~-~~-sg~di~~l~~~a~~~a~~r~~~~~~~ 432 (478)
+...+++++ +..++..... +. +.+.+.++++.|...|..+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~-~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~------ 306 (350)
T 1g8p_A 234 YDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTA-LYDCAALCIALGSDGLRGELTLLRSARALAALEG------ 306 (350)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHH-HHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTT------
T ss_pred cccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC------
Confidence 112233222 3444443311 22 56778888887776665432
Q ss_pred CCCCCccccHHHHHhch
Q psy450 433 VKSAPVIVTMDDFLGAC 449 (478)
Q Consensus 433 ~~~~~~~it~~d~~~A~ 449 (478)
...|+.+|+.+|+
T Consensus 307 ----~~~v~~~~v~~a~ 319 (350)
T 1g8p_A 307 ----ATAVGRDHLKRVA 319 (350)
T ss_dssp ----CSBCCHHHHHHHH
T ss_pred ----CCcCCHHHHHHHH
Confidence 3469999999983
No 62
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2e-17 Score=160.07 Aligned_cols=160 Identities=7% Similarity=0.075 Sum_probs=118.3
Q ss_pred ccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh----------CCcEEEEechhhhh------
Q psy450 209 IGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC----------RMNFLAVKGPELLN------ 272 (478)
Q Consensus 209 i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~----------~~~~~~v~~~~l~~------ 272 (478)
+.|.++..+.+...+...... ..+.+++|+||||||||++++.+++++ +..+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~--~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMS--SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 556677777777666655432 347889999999999999999999998 35688999865432
Q ss_pred ----hhh------cchHHHHHHHHHHh--HhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeE
Q psy450 273 ----KYI------GQSEENIRNVFLKA--RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVF 340 (478)
Q Consensus 273 ----~~~------g~~~~~~~~~~~~a--~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~ 340 (478)
... +.....+...|... ....++|++|||+|.+. . +.+++.++.+.. ....+++
T Consensus 100 ~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~-----------q~~L~~l~~~~~--~~~s~~~ 165 (318)
T 3te6_A 100 KIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S-----------EKILQYFEKWIS--SKNSKLS 165 (318)
T ss_dssp HHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C-----------THHHHHHHHHHH--CSSCCEE
T ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c-----------chHHHHHHhccc--ccCCcEE
Confidence 221 33566778888775 35567899999999997 1 356777776543 2456799
Q ss_pred EEEEcCCCCC----CCccccCCCCCC-eEEEeCCCCCHHHHHHHHHHHHhcC
Q psy450 341 ILGATNRVDL----LDPAILRPGRLD-KSLYVGLYEDRISQLGVLKAVVRKF 387 (478)
Q Consensus 341 vI~ttn~~~~----ld~~l~~~~Rf~-~~i~~~~pp~~~~r~~il~~~~~~~ 387 (478)
||+++|..+. +++++++ ||. ..+.|+. ++.++..+|++..++..
T Consensus 166 vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~p-Yt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 166 IICVGGHNVTIREQINIMPSL--KAHFTEIKLNK-VDKNELQQMIITRLKSL 214 (318)
T ss_dssp EEEECCSSCCCHHHHHTCHHH--HTTEEEEECCC-CCHHHHHHHHHHHHHHH
T ss_pred EEEEecCcccchhhcchhhhc--cCCceEEEeCC-CCHHHHHHHHHHHHHhh
Confidence 9999999875 3445566 887 5788875 79999999999888764
No 63
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.71 E-value=4.8e-17 Score=165.84 Aligned_cols=203 Identities=17% Similarity=0.212 Sum_probs=136.8
Q ss_pred CCCCcccccCcHHHH---HHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcch
Q psy450 202 PNVSWEDIGGLSKLK---AEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQS 278 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k---~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~ 278 (478)
.+.+|++++|+++++ ..|...+.... ..++||+||||||||++|+++++.++.+++.+++... .
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~~~------~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-------~ 87 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEAGH------LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-------G 87 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHHTC------CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-------C
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHcCC------CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-------C
Confidence 456799999999998 56666554321 3579999999999999999999999999999986432 3
Q ss_pred HHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEc--CCCCCCC
Q psy450 279 EENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGAT--NRVDLLD 352 (478)
Q Consensus 279 ~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~tt--n~~~~ld 352 (478)
...++.++..+. ...++||||||+|.+... ..+.|+..++. ..+++|++| |....++
T Consensus 88 ~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~-------------~q~~LL~~le~----~~v~lI~att~n~~~~l~ 150 (447)
T 3pvs_A 88 VKEIREAIERARQNRNAGRRTILFVDEVHRFNKS-------------QQDAFLPHIED----GTITFIGATTENPSFELN 150 (447)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-------------------CCHHHHHT----TSCEEEEEESSCGGGSSC
T ss_pred HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH-------------HHHHHHHHHhc----CceEEEecCCCCcccccC
Confidence 334555555543 346789999999999632 23445666653 346666665 3335789
Q ss_pred ccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCC-------CC-CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q psy450 353 PAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFK-------LS-DDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIR 424 (478)
Q Consensus 353 ~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~-------~~-~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~ 424 (478)
+++++ |+. .+.++. ++.+++..+++..+.... +. .+..+..++..+ .| +.+++.+++..++..+..
T Consensus 151 ~aL~s--R~~-v~~l~~-l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~-~G-d~R~lln~Le~a~~~a~~ 224 (447)
T 3pvs_A 151 SALLS--RAR-VYLLKS-LSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELV-NG-DARRALNTLEMMADMAEV 224 (447)
T ss_dssp HHHHT--TEE-EEECCC-CCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHH-CS-CHHHHHHHHHHHHHHSCB
T ss_pred HHHhC--cee-EEeeCC-cCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHC-CC-CHHHHHHHHHHHHHhccc
Confidence 99999 886 566765 689999999998887522 11 112266677765 33 555666666666543211
Q ss_pred HHHhcCCCCCCCCccccHHHHHhc
Q psy450 425 RIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 425 r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
. ......||.+|+.++
T Consensus 225 ~--------~~~~~~It~e~v~~~ 240 (447)
T 3pvs_A 225 D--------DSGKRVLKPELLTEI 240 (447)
T ss_dssp C--------TTSCEECCHHHHHHH
T ss_pred c--------cCCCCccCHHHHHHH
Confidence 0 012357999999999
No 64
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.71 E-value=4.4e-17 Score=158.88 Aligned_cols=207 Identities=17% Similarity=0.241 Sum_probs=142.0
Q ss_pred ccccCcHHHHHHHHHHHHhhhhh---CCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh-----hh
Q psy450 207 EDIGGLSKLKAEILSTFRGVNRT---SGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK-----YI 275 (478)
Q Consensus 207 ~~i~g~~~~k~~l~~~~~~~~~~---~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~-----~~ 275 (478)
++++|++.+++.+...+...... +..+..+++|+||||||||++|+++++.+ +.+++.++++.+... ..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 96 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLI 96 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhc
Confidence 45789999999999888776432 22224579999999999999999999988 557999998765321 11
Q ss_pred cchHH----H-HHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC---------CCCCeEE
Q psy450 276 GQSEE----N-IRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH---------TSQDVFI 341 (478)
Q Consensus 276 g~~~~----~-~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~v 341 (478)
|.... . ...+........+++|||||+|.+. ..+.+.|+..++... ...++++
T Consensus 97 g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~-------------~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ii 163 (311)
T 4fcw_A 97 GAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH-------------PDVFNILLQMLDDGRLTDSHGRTVDFRNTVI 163 (311)
T ss_dssp CCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC-------------HHHHHHHHHHHHHSEEECTTSCEEECTTEEE
T ss_pred CCCCccccccccchHHHHHHhCCCeEEEEeChhhcC-------------HHHHHHHHHHHhcCEEEcCCCCEEECCCcEE
Confidence 11000 0 0112223334455899999999986 345666766665322 1136789
Q ss_pred EEEcCC--------------------------CCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcC-------C
Q psy450 342 LGATNR--------------------------VDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKF-------K 388 (478)
Q Consensus 342 I~ttn~--------------------------~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~-------~ 388 (478)
|+|||. ...+++++++ ||+..+.+++ |+.+++..|++.+++.. .
T Consensus 164 I~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p-~~~~~~~~i~~~~l~~~~~~~~~~~ 240 (311)
T 4fcw_A 164 IMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRP-LTKEQIRQIVEIQMSYLRARLAEKR 240 (311)
T ss_dssp EEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCC-CCHHHHHHHHHHHTHHHHHHHHTTT
T ss_pred EEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCC-CCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999998 4467888888 9999888875 78999999998876542 1
Q ss_pred CCC---CCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy450 389 LSD---DVSLDSLVHHFP-SQMSGADIYSICSNAWTRAIRRIITS 429 (478)
Q Consensus 389 ~~~---~~~~~~la~~~~-~~~sg~di~~l~~~a~~~a~~r~~~~ 429 (478)
... +..+..++.+.. ...+.++++++++.+...+..+.+..
T Consensus 241 ~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~ 285 (311)
T 4fcw_A 241 ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILA 285 (311)
T ss_dssp CEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 111 112555666431 14677899999999999888877544
No 65
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.70 E-value=8.6e-16 Score=141.39 Aligned_cols=200 Identities=19% Similarity=0.187 Sum_probs=137.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh-----CCcEEEEechhhhhhhh
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC-----RMNFLAVKGPELLNKYI 275 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~-----~~~~~~v~~~~l~~~~~ 275 (478)
.++..|++++|.+..++.+...+... .+.+++|+||||||||++++.+++.+ ...++.+++.....
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--- 81 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG--- 81 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTC---
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccC---
Confidence 45667899999999999988877542 13459999999999999999999876 45677887754321
Q ss_pred cchHHHHHHHHHHhH------hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC
Q psy450 276 GQSEENIRNVFLKAR------SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349 (478)
Q Consensus 276 g~~~~~~~~~~~~a~------~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 349 (478)
...+...+.... ...+.+|+|||+|.+.+ .....++..++. ...++.+|++||.+.
T Consensus 82 ---~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-------------~~~~~l~~~l~~--~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 82 ---IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-------------DAQAALRRTMEM--YSKSCRFILSCNYVS 143 (226)
T ss_dssp ---HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-------------HHHHHHHHHHHH--TTTTEEEEEEESCGG
T ss_pred ---hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH-------------HHHHHHHHHHHh--cCCCCeEEEEeCChh
Confidence 122222222221 25678999999999863 234455555553 245678889999999
Q ss_pred CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy450 350 LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIIT 428 (478)
Q Consensus 350 ~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~ 428 (478)
.+++.+.+ ||. .+.++. ++.++...+++..+...+...+ ..+..++..+ .| +.+.+.++++.++..+
T Consensus 144 ~~~~~l~~--r~~-~i~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~g-~~r~l~~~l~~~~~~~------ 211 (226)
T 2chg_A 144 RIIEPIQS--RCA-VFRFKP-VPKEAMKKRLLEICEKEGVKITEDGLEALIYIS-GG-DFRKAINALQGAAAIG------ 211 (226)
T ss_dssp GSCHHHHT--TSE-EEECCC-CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH-TT-CHHHHHHHHHHHHHTC------
T ss_pred hcCHHHHH--hCc-eeecCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CC-CHHHHHHHHHHHHhcC------
Confidence 99999998 987 778875 6888999999888765443322 2355666655 33 4445555555444221
Q ss_pred cCCCCCCCCccccHHHHHhc
Q psy450 429 SAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 429 ~~~~~~~~~~~it~~d~~~A 448 (478)
..||.+|+.++
T Consensus 212 ---------~~I~~~~v~~~ 222 (226)
T 2chg_A 212 ---------EVVDADTIYQI 222 (226)
T ss_dssp ---------SCBCHHHHHHH
T ss_pred ---------ceecHHHHHHH
Confidence 36999999988
No 66
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.68 E-value=2.8e-16 Score=157.76 Aligned_cols=207 Identities=20% Similarity=0.223 Sum_probs=142.6
Q ss_pred ccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh-----------CCcEEEEechhhh-hh-
Q psy450 207 EDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC-----------RMNFLAVKGPELL-NK- 273 (478)
Q Consensus 207 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~-----------~~~~~~v~~~~l~-~~- 273 (478)
++++|.++.++.+...+...... ..+.+++|+||||||||++++++++.+ +.+++++++.... +.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~--~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN--EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT--CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 78999999999999888765432 336689999999999999999999987 8999999976543 11
Q ss_pred ---------h-------hcch-HHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHH-HHHHHHhhcCCCC
Q psy450 274 ---------Y-------IGQS-EENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRV-VSQLLAEMDGVHT 335 (478)
Q Consensus 274 ---------~-------~g~~-~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~-~~~ll~~l~~~~~ 335 (478)
. .+.+ ...+..++..+.... .+|+|||+|.+..... ... +..++...
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~---------~~~~l~~l~~~~----- 162 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRG---------GDIVLYQLLRSD----- 162 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTT---------SHHHHHHHHTSS-----
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCC---------CceeHHHHhcCC-----
Confidence 1 1111 223444444444443 4999999999974321 123 44444332
Q ss_pred CCCeEEEEEcCCC---CCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhc----CCCCCCCCHHHHHHhcCCCC--
Q psy450 336 SQDVFILGATNRV---DLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRK----FKLSDDVSLDSLVHHFPSQM-- 406 (478)
Q Consensus 336 ~~~v~vI~ttn~~---~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~----~~~~~~~~~~~la~~~~~~~-- 406 (478)
.++.+|++||.+ +.+++.+++ ||...+.++. ++.++...|++..++. ..++++ .+..++..+ .+.
T Consensus 163 -~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~-l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~i~~~~-~~~~G 236 (384)
T 2qby_B 163 -ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKP-YDAEQLKFILSKYAEYGLIKGTYDDE-ILSYIAAIS-AKEHG 236 (384)
T ss_dssp -SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECC-CCHHHHHHHHHHHHHHTSCTTSCCSH-HHHHHHHHH-HTTCC
T ss_pred -cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECC-CCHHHHHHHHHHHHHhhcccCCcCHH-HHHHHHHHH-HhccC
Confidence 678899999987 678899988 9888999985 7999999999988763 222222 255666655 322
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 407 SGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 407 sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
+.+.+.++|+.|+..|. ....||.+|+..|
T Consensus 237 ~~r~a~~~l~~a~~~a~------------~~~~i~~~~v~~~ 266 (384)
T 2qby_B 237 DARKAVNLLFRAAQLAS------------GGGIIRKEHVDKA 266 (384)
T ss_dssp CHHHHHHHHHHHHHHTT------------SSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhc------------CCCccCHHHHHHH
Confidence 23445566666654443 1346999999998
No 67
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.67 E-value=1.2e-16 Score=143.60 Aligned_cols=159 Identities=20% Similarity=0.321 Sum_probs=113.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh----------CCcEEEEechhhh-
Q psy450 203 NVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC----------RMNFLAVKGPELL- 271 (478)
Q Consensus 203 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~----------~~~~~~v~~~~l~- 271 (478)
...|++++|.++..+.+.+.+.. ..+.+++|+||||||||++++++++.+ +.+++.+++..+.
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA 91 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHT
T ss_pred hccccccccchHHHHHHHHHHhc------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhc
Confidence 34688999999988888776543 126679999999999999999999986 7889999988776
Q ss_pred -hhhhcchHHHHHHHHHHhH-hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC
Q psy450 272 -NKYIGQSEENIRNVFLKAR-SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349 (478)
Q Consensus 272 -~~~~g~~~~~~~~~~~~a~-~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 349 (478)
..+.+.....+..++..+. ...++||+|||+|.+.+....... ......+..+ ++ ..++.+|++||.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~--~~~~~~l~~~---~~----~~~~~~i~~~~~~~ 162 (195)
T 1jbk_A 92 GAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA--MDAGNMLKPA---LA----RGELHCVGATTLDE 162 (195)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------C--CCCHHHHHHH---HH----TTSCCEEEEECHHH
T ss_pred cCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccch--HHHHHHHHHh---hc----cCCeEEEEeCCHHH
Confidence 3345556667777777654 355789999999999754321111 1112223332 22 34577888888875
Q ss_pred -----CCCccccCCCCCCeEEEeCCCCCHHHHHHHH
Q psy450 350 -----LLDPAILRPGRLDKSLYVGLYEDRISQLGVL 380 (478)
Q Consensus 350 -----~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il 380 (478)
.+++++++ ||. .+.++. |+.+++.+|+
T Consensus 163 ~~~~~~~~~~l~~--r~~-~i~~~~-p~~~~~~~il 194 (195)
T 1jbk_A 163 YRQYIEKDAALER--RFQ-KVFVAE-PSVEDTIAIL 194 (195)
T ss_dssp HHHHTTTCHHHHT--TEE-EEECCC-CCHHHHHTTC
T ss_pred HHHHHhcCHHHHH--Hhc-eeecCC-CCHHHHHHHh
Confidence 68999999 998 688886 6888887665
No 68
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.67 E-value=7.8e-16 Score=151.01 Aligned_cols=153 Identities=20% Similarity=0.210 Sum_probs=113.8
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHH
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEE 280 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~ 280 (478)
+.+.+|++++|++++++.+...+. .+..++.+|++||||||||++++++++.++.+++++++++.. ..
T Consensus 20 ~rP~~~~~ivg~~~~~~~l~~~l~-----~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-------~~ 87 (324)
T 3u61_B 20 YRPSTIDECILPAFDKETFKSITS-----KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-------ID 87 (324)
T ss_dssp SCCCSTTTSCCCHHHHHHHHHHHH-----TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-------HH
T ss_pred hCCCCHHHHhCcHHHHHHHHHHHH-----cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-------HH
Confidence 455789999999999999888776 233366788899999999999999999999999999986532 33
Q ss_pred HHHHHHHHhHhC-----CCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccc
Q psy450 281 NIRNVFLKARSA-----APCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAI 355 (478)
Q Consensus 281 ~~~~~~~~a~~~-----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l 355 (478)
.++..+...... .+.+|+|||+|.+.+ ....+.|+..++.. ..++.+|++||.+..+++++
T Consensus 88 ~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~------------~~~~~~L~~~le~~--~~~~~iI~~~n~~~~l~~~l 153 (324)
T 3u61_B 88 FVRGPLTNFASAASFDGRQKVIVIDEFDRSGL------------AESQRHLRSFMEAY--SSNCSIIITANNIDGIIKPL 153 (324)
T ss_dssp HHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG------------HHHHHHHHHHHHHH--GGGCEEEEEESSGGGSCTTH
T ss_pred HHHHHHHHHHhhcccCCCCeEEEEECCcccCc------------HHHHHHHHHHHHhC--CCCcEEEEEeCCccccCHHH
Confidence 444444433222 568999999999862 12345555555532 24578889999999999999
Q ss_pred cCCCCCCeEEEeCCCCCHHHHHHHHHHH
Q psy450 356 LRPGRLDKSLYVGLYEDRISQLGVLKAV 383 (478)
Q Consensus 356 ~~~~Rf~~~i~~~~pp~~~~r~~il~~~ 383 (478)
++ ||. .+.++. |+.+++..|++.+
T Consensus 154 ~s--R~~-~i~~~~-~~~~e~~~il~~~ 177 (324)
T 3u61_B 154 QS--RCR-VITFGQ-PTDEDKIEMMKQM 177 (324)
T ss_dssp HH--HSE-EEECCC-CCHHHHHHHHHHH
T ss_pred Hh--hCc-EEEeCC-CCHHHHHHHHHHH
Confidence 99 994 688876 6888876665443
No 69
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.67 E-value=6.8e-15 Score=137.12 Aligned_cols=202 Identities=18% Similarity=0.205 Sum_probs=141.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc-------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------- 261 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------- 261 (478)
..+..+++++|.+..++.+...+.. +..+..++|+||||+|||++++.+++.++..
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSL-----GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 91 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHH-----TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHT
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhc
Confidence 3456688999999999998887753 2224579999999999999999999887432
Q ss_pred -----EEEEechhhhhhhhcchHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC
Q psy450 262 -----FLAVKGPELLNKYIGQSEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG 332 (478)
Q Consensus 262 -----~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~ 332 (478)
++.++... ......++.++..+. ...+.+|+|||+|.+. ....+.++..++.
T Consensus 92 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~-------------~~~~~~l~~~l~~ 152 (250)
T 1njg_A 92 GRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-------------RHSFNALLKTLEE 152 (250)
T ss_dssp TCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC-------------HHHHHHHHHHHHS
T ss_pred cCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc-------------HHHHHHHHHHHhc
Confidence 22222211 112334555555442 2357899999999985 2455667777764
Q ss_pred CCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHH
Q psy450 333 VHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADI 411 (478)
Q Consensus 333 ~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di 411 (478)
...++.+|++||.+..+++.+.+ |+ ..+.++. ++.++..++++.++...+...+ ..+..++..+ .| +.+.+
T Consensus 153 --~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~-l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~G-~~~~~ 224 (250)
T 1njg_A 153 --PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKA-LDVEQIRHQLEHILNEEHIAHEPRALQLLARAA-EG-SLRDA 224 (250)
T ss_dssp --CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCC-CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH-TT-CHHHH
T ss_pred --CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCC-CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc-CC-CHHHH
Confidence 24578889999998889999988 75 6778875 7889999999888865543322 2366777776 55 67788
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 412 YSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 412 ~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
.++++.|... ....||.+|+.++
T Consensus 225 ~~~~~~~~~~--------------~~~~i~~~~v~~~ 247 (250)
T 1njg_A 225 LSLTDQAIAS--------------GDGQVSTQAVSAM 247 (250)
T ss_dssp HHHHHHHHTT--------------TTSSBCHHHHHHH
T ss_pred HHHHHHHHhc--------------cCceecHHHHHHH
Confidence 8877766411 1226999999988
No 70
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.67 E-value=7.8e-16 Score=143.83 Aligned_cols=205 Identities=11% Similarity=0.074 Sum_probs=134.3
Q ss_pred CCCCCcccccCc---HHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC---CcEEEEechhhhhhh
Q psy450 201 VPNVSWEDIGGL---SKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR---MNFLAVKGPELLNKY 274 (478)
Q Consensus 201 ~~~~~~~~i~g~---~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~---~~~~~v~~~~l~~~~ 274 (478)
.|..+|++++|. +.+.+.+....... .+.+++|+||||||||++++++++.+. .+++++++.++....
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 95 (242)
T 3bos_A 22 PDDETFTSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIS 95 (242)
T ss_dssp CTTCSTTTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSC
T ss_pred CCCCChhhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 455788998872 45555555544321 267899999999999999999998874 788899987765432
Q ss_pred hcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCe-EEEEEcCCCC---C
Q psy450 275 IGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDV-FILGATNRVD---L 350 (478)
Q Consensus 275 ~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v-~vI~ttn~~~---~ 350 (478)
.. .+.. ...+.+|+|||++.+.... .....++..++.......+ +|++++..+. .
T Consensus 96 ~~--------~~~~--~~~~~vliiDe~~~~~~~~-----------~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 96 TA--------LLEG--LEQFDLICIDDVDAVAGHP-----------LWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp GG--------GGTT--GGGSSEEEEETGGGGTTCH-----------HHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred HH--------HHHh--ccCCCEEEEeccccccCCH-----------HHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 11 1111 1346799999999986421 1122333333322223334 5555554443 3
Q ss_pred CCccccCCCCCC--eEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy450 351 LDPAILRPGRLD--KSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRII 427 (478)
Q Consensus 351 ld~~l~~~~Rf~--~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~ 427 (478)
+++.+.+ ||. ..+.++. |+.+++.++++.+++..+..-+ ..+..++..+ . -+.+++.++++.+...|...
T Consensus 155 ~~~~l~~--r~~~~~~i~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~-g~~r~l~~~l~~~~~~a~~~-- 227 (242)
T 3bos_A 155 VLPDLVS--RMHWGLTYQLQP-MMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRM-A-RDLRTLFDVLDRLDKASMVH-- 227 (242)
T ss_dssp CCHHHHH--HHHHSEEEECCC-CCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHT-T-TCHHHHHHHHHHHHHHHHHH--
T ss_pred hhhhhhh--HhhcCceEEeCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-c-CCHHHHHHHHHHHHHHHHHh--
Confidence 5578887 775 7888886 6889999999988876554322 2256677765 3 36778888888887766433
Q ss_pred hcCCCCCCCCccccHHHHHhc
Q psy450 428 TSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 428 ~~~~~~~~~~~~it~~d~~~A 448 (478)
...||.+|+.++
T Consensus 228 ---------~~~It~~~v~~~ 239 (242)
T 3bos_A 228 ---------QRKLTIPFVKEM 239 (242)
T ss_dssp ---------TCCCCHHHHHHH
T ss_pred ---------CCCCcHHHHHHH
Confidence 235999999988
No 71
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.66 E-value=4.9e-16 Score=147.33 Aligned_cols=143 Identities=17% Similarity=0.190 Sum_probs=121.3
Q ss_pred cchhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhhccCCCcEEEEe
Q psy450 28 RYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL 94 (478)
Q Consensus 28 ~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via 94 (478)
...+++.+|+ .|+...|+|+||||+|.++..+ .++.++..+|++ ....+++||+
T Consensus 89 ~~~~~~~~~~-~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~------------~~~~~~~vI~ 155 (257)
T 1lv7_A 89 GASRVRDMFE-QAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF------------EGNEGIIVIA 155 (257)
T ss_dssp CHHHHHHHHH-HHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC------------CSSSCEEEEE
T ss_pred hHHHHHHHHH-HHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCc------------ccCCCEEEEE
Confidence 3457899999 9988899999999999998643 466777777753 3455677777
Q ss_pred -------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy450 95 -------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNK 165 (478)
Q Consensus 95 -------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a 165 (478)
+|++++| ||++.++++.|+.++|.+||+.+++.. ++..+.++ ..++..++||+++|++.+|++|+..+
T Consensus 156 ~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~--~l~~~~~~-~~la~~~~G~~~~dl~~l~~~a~~~a 232 (257)
T 1lv7_A 156 ATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV--PLAPDIDA-AIIARGTPGFSGADLANLVNEAALFA 232 (257)
T ss_dssp EESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCH-HHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred eeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC--CCCccccH-HHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 8999999 999999999999999999999999876 55566666 89999999999999999999999988
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHhh
Q psy450 166 MLKQGINKRDLQKEDFQQIYDDLQ 189 (478)
Q Consensus 166 ~~~~~~~~~~it~~d~~~a~~~~~ 189 (478)
..+ +...|+.+||..++..+.
T Consensus 233 ~~~---~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 233 ARG---NKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHT---TCSSBCHHHHHHHHHHHT
T ss_pred HHh---CCCcccHHHHHHHHHHHh
Confidence 754 457899999999998875
No 72
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.65 E-value=1.6e-15 Score=150.87 Aligned_cols=153 Identities=12% Similarity=0.144 Sum_probs=122.9
Q ss_pred cchhhhhHHHHhhhhcCCCeEEEecccccccch----------hhHhhhccccccccccccchhhhccCCCcEEEEe---
Q psy450 28 RYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK----------YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL--- 94 (478)
Q Consensus 28 ~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r----------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via--- 94 (478)
....++.+|. .++..+|+||||||+|.+++.+ .++.+|..+|+... ....+|+||+
T Consensus 161 ~~~~~~~~~~-~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~----------~~~~~v~vI~atn 229 (357)
T 3d8b_A 161 GEKMVRALFA-VARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATT----------SSEDRILVVGATN 229 (357)
T ss_dssp HHHHHHHHHH-HHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC--------------CCCCEEEEEEES
T ss_pred HHHHHHHHHH-HHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccc----------cCCCCEEEEEecC
Confidence 3447889998 8998999999999999998753 56778888886421 2345688887
Q ss_pred ----eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc
Q psy450 95 ----IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQG 170 (478)
Q Consensus 95 ----ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~ 170 (478)
+|++++|||+..++++.|+.++|.+|++.++...+ ...+.+.++.++..++||+++|+..+|++|+..++++..
T Consensus 230 ~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~--~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~ 307 (357)
T 3d8b_A 230 RPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQ--CCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQ 307 (357)
T ss_dssp CGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSC--BCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCC
T ss_pred ChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcC--CCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999997763 233444459999999999999999999999988876421
Q ss_pred ---------CCCCCCCHHHHHHHHHHhhhhcc
Q psy450 171 ---------INKRDLQKEDFQQIYDDLQSRYS 193 (478)
Q Consensus 171 ---------~~~~~it~~d~~~a~~~~~~~~~ 193 (478)
.....|+.+||..++..++|+..
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~ 339 (357)
T 3d8b_A 308 TADIATITPDQVRPIAYIDFENAFRTVRPSVS 339 (357)
T ss_dssp C----------CCCBCHHHHHHHHHHHGGGCC
T ss_pred hhhhccccccccCCcCHHHHHHHHHhcCCCCC
Confidence 23568999999999999988643
No 73
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.65 E-value=2.8e-16 Score=161.43 Aligned_cols=145 Identities=15% Similarity=0.187 Sum_probs=123.3
Q ss_pred cchhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhhccCCCcEEEEe
Q psy450 28 RYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL 94 (478)
Q Consensus 28 ~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via 94 (478)
...+++.+|+ .++...|||+||||+|+++..+ .++++|.+||+. .....++|+|
T Consensus 108 ~~~~v~~lfq-~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~------------~~~~~viviA 174 (499)
T 2dhr_A 108 GAARVRDLFE-TAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF------------EKDTAIVVMA 174 (499)
T ss_dssp HHHHHHHHTT-TSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC------------CSSCCCEEEE
T ss_pred HHHHHHHHHH-HHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc------------ccCccEEEEE
Confidence 4457889998 8888899999999999997643 567888888853 4455677887
Q ss_pred -------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy450 95 -------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNK 165 (478)
Q Consensus 95 -------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a 165 (478)
+||+++| ||++.|+|+.||.++|.+||+.+++.. ++..++++ ..++..|+||+|+||+++|++|+..+
T Consensus 175 atn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~--~l~~dv~l-~~lA~~t~G~~gadL~~lv~~Aa~~A 251 (499)
T 2dhr_A 175 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK--PLAEDVDL-ALLAKRTPGFVGADLENLLNEAALLA 251 (499)
T ss_dssp CCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS--CCCCSSTT-HHHHTTSCSCCHHHHHHHHHHHHHHH
T ss_pred ecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC--CCChHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999998766 66677777 99999999999999999999999887
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHhhhh
Q psy450 166 MLKQGINKRDLQKEDFQQIYDDLQSR 191 (478)
Q Consensus 166 ~~~~~~~~~~it~~d~~~a~~~~~~~ 191 (478)
.++ +...|+.+||..++..+.+.
T Consensus 252 ~~~---~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 252 ARE---GRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp TTT---CCSSCCSHHHHHHHHHHTTC
T ss_pred HHh---CCCccCHHHHHHHHHHHhcc
Confidence 643 45689999999999988654
No 74
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.65 E-value=7.8e-16 Score=154.17 Aligned_cols=219 Identities=19% Similarity=0.238 Sum_probs=145.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh------CCcEEEEechhhhh----
Q psy450 203 NVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC------RMNFLAVKGPELLN---- 272 (478)
Q Consensus 203 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~------~~~~~~v~~~~l~~---- 272 (478)
....++++|.++..+.+.+.+...... ..+.+++|+||||||||++++.+++.+ +.+++++++.....
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~~--~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 93 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYRE--EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRV 93 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGGT--CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHH
Confidence 344588999999999998877654322 236689999999999999999999988 88999999764321
Q ss_pred --hh----------hcchHH-HHHHHHHHhHhC-CCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCC
Q psy450 273 --KY----------IGQSEE-NIRNVFLKARSA-APCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQD 338 (478)
Q Consensus 273 --~~----------~g~~~~-~~~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 338 (478)
.. .+.+.. ....++...... .|++|+|||++.+....+ ...+..++..++.. ...+
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~---------~~~l~~l~~~~~~~-~~~~ 163 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN---------DDILYKLSRINSEV-NKSK 163 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC---------STHHHHHHHHHHSC-CC--
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc---------CHHHHHHhhchhhc-CCCe
Confidence 10 111222 234444444433 389999999999874321 13556666666543 3457
Q ss_pred eEEEEEcCCC---CCCCccccCCCCCC-eEEEeCCCCCHHHHHHHHHHHHhc-C---CCCCCCCHHHHHHhcCC--CCCH
Q psy450 339 VFILGATNRV---DLLDPAILRPGRLD-KSLYVGLYEDRISQLGVLKAVVRK-F---KLSDDVSLDSLVHHFPS--QMSG 408 (478)
Q Consensus 339 v~vI~ttn~~---~~ld~~l~~~~Rf~-~~i~~~~pp~~~~r~~il~~~~~~-~---~~~~~~~~~~la~~~~~--~~sg 408 (478)
+.+|++||.+ ..+++.+.+ ||. ..+.++. ++.++..++++..+.. . .++.+ .+..++..+ . .-+.
T Consensus 164 ~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~-l~~~~~~~il~~~~~~~~~~~~~~~~-~~~~l~~~~-~~~~G~~ 238 (386)
T 2qby_A 164 ISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPP-YNAEELEDILTKRAQMAFKPGVLPDN-VIKLCAALA-AREHGDA 238 (386)
T ss_dssp EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECC-CCHHHHHHHHHHHHHHHBCSSCSCHH-HHHHHHHHH-HHTTCCH
T ss_pred EEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCC-CCHHHHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH-HHhcCCH
Confidence 8889999887 457788887 776 4788875 7899999999887653 1 22221 244455544 2 0344
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 409 ADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 409 ~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
+.+.++|..|+..+..+ ....||.+|+..|
T Consensus 239 r~~~~ll~~a~~~a~~~----------~~~~i~~~~v~~a 268 (386)
T 2qby_A 239 RRALDLLRVSGEIAERM----------KDTKVKEEYVYMA 268 (386)
T ss_dssp HHHHHHHHHHHHHHHHT----------TCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc----------CCCccCHHHHHHH
Confidence 56667777776655432 1346999999988
No 75
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.64 E-value=1.3e-15 Score=150.04 Aligned_cols=155 Identities=23% Similarity=0.273 Sum_probs=106.2
Q ss_pred cccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh--hhhhcchHHH-H
Q psy450 206 WEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL--NKYIGQSEEN-I 282 (478)
Q Consensus 206 ~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~--~~~~g~~~~~-~ 282 (478)
+++++|++.+++.+...+.. +.++||+||||||||++|+++++.++.+++.+++..-. ....|..... .
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~--------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~ 97 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT--------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQH 97 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH--------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETT
T ss_pred ccceeCcHHHHHHHHHHHHc--------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCC
Confidence 45788999999887766543 34799999999999999999999999999998873110 1111110000 0
Q ss_pred HHHHHHhHhCC---CeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCC---------CCCCCeEEEEEcCCCC-
Q psy450 283 RNVFLKARSAA---PCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGV---------HTSQDVFILGATNRVD- 349 (478)
Q Consensus 283 ~~~~~~a~~~~---p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~v~vI~ttn~~~- 349 (478)
...+ ....+ .+|+||||++.+.+ ...+.|+..++.. ....+++||+|+|..+
T Consensus 98 ~~~~--~~~~g~l~~~vl~iDEi~~~~~-------------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~ 162 (331)
T 2r44_A 98 KGNF--EVKKGPVFSNFILADEVNRSPA-------------KVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQ 162 (331)
T ss_dssp TTEE--EEEECTTCSSEEEEETGGGSCH-------------HHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCC
T ss_pred CCce--EeccCcccccEEEEEccccCCH-------------HHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcc
Confidence 0000 00011 26999999999862 3455555555421 1234678888888543
Q ss_pred ----CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhc
Q psy450 350 ----LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRK 386 (478)
Q Consensus 350 ----~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~ 386 (478)
.+++++++ ||+..+.++. |+.+++.+|++.....
T Consensus 163 ~~~~~l~~~l~~--Rf~~~i~i~~-p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 163 EGTYPLPEAQVD--RFMMKIHLTY-LDKESELEVMRRVSNM 200 (331)
T ss_dssp SCCCCCCHHHHT--TSSEEEECCC-CCHHHHHHHHHHHHCT
T ss_pred cCcccCCHHHHh--heeEEEEcCC-CCHHHHHHHHHhcccc
Confidence 38999999 9998899987 6999999999887754
No 76
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.64 E-value=1.8e-14 Score=141.83 Aligned_cols=211 Identities=18% Similarity=0.255 Sum_probs=145.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHH
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEE 280 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~ 280 (478)
.....+++++|.+.+++.+...+..... .+.++.+++|+|||||||||+++++|+.++.++...+++.+. ...
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~------~~~ 91 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQG 91 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC------SHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc------CHH
Confidence 4455789999999999888876654422 233457799999999999999999999999988777654332 112
Q ss_pred HHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC----------------CCCCeEEEEE
Q psy450 281 NIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH----------------TSQDVFILGA 344 (478)
Q Consensus 281 ~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~v~vI~t 344 (478)
.+..++... ..++|+||||++.+.+ .....++..++... .-..+.++++
T Consensus 92 ~l~~~~~~~--~~~~v~~iDE~~~l~~-------------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~a 156 (334)
T 1in4_A 92 DMAAILTSL--ERGDVLFIDEIHRLNK-------------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGA 156 (334)
T ss_dssp HHHHHHHHC--CTTCEEEEETGGGCCH-------------HHHHHHHHHHHTSCCCC---------------CCCEEEEE
T ss_pred HHHHHHHHc--cCCCEEEEcchhhcCH-------------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEe
Confidence 233333322 2457999999999863 11222222222111 0124677889
Q ss_pred cCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q psy450 345 TNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADIYSICSNAWTRAI 423 (478)
Q Consensus 345 tn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di~~l~~~a~~~a~ 423 (478)
|+++..+++.+++ ||.....++. ++.+++.+|++...+..++..+ .....++.++ .| +.+.+.++++.+...|.
T Consensus 157 t~~~~~Ls~~l~s--R~~l~~~Ld~-~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~-~G-~~R~a~~ll~~~~~~a~ 231 (334)
T 1in4_A 157 TTRSGLLSSPLRS--RFGIILELDF-YTVKELKEIIKRAASLMDVEIEDAAAEMIAKRS-RG-TPRIAIRLTKRVRDMLT 231 (334)
T ss_dssp ESCGGGSCHHHHT--TCSEEEECCC-CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTS-TT-CHHHHHHHHHHHHHHHH
T ss_pred cCCcccCCHHHHH--hcCceeeCCC-CCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhc-CC-ChHHHHHHHHHHHHHHH
Confidence 9999999999999 9988888886 7999999999988776554422 2266677765 44 55778888887776665
Q ss_pred HHHHhcCCCCCCCCccccHHHHHhc
Q psy450 424 RRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 424 ~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
.+. ...||.+++.+|
T Consensus 232 ~~~----------~~~It~~~v~~a 246 (334)
T 1in4_A 232 VVK----------ADRINTDIVLKT 246 (334)
T ss_dssp HHT----------CSSBCHHHHHHH
T ss_pred HcC----------CCCcCHHHHHHH
Confidence 432 346888888888
No 77
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.64 E-value=3.4e-15 Score=149.92 Aligned_cols=217 Identities=14% Similarity=0.091 Sum_probs=146.4
Q ss_pred CCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh----CCcEEEEechhhhh------h
Q psy450 204 VSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC----RMNFLAVKGPELLN------K 273 (478)
Q Consensus 204 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~----~~~~~~v~~~~l~~------~ 273 (478)
...++++|.++..+.+...+..........+++++|+||||||||++++++++.+ +.+++++++....+ .
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 3447899999999999988876544322112379999999999999999999988 57889998754321 1
Q ss_pred h----------hcchHHH-HHHHHHHhH-hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC--CCCe
Q psy450 274 Y----------IGQSEEN-IRNVFLKAR-SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT--SQDV 339 (478)
Q Consensus 274 ~----------~g~~~~~-~~~~~~~a~-~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~v 339 (478)
. .+.+... ...+..... ...|.+|+|||+|.+. ...+..|+..++.... ..++
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-------------~~~~~~L~~~~~~~~~~~~~~~ 160 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-------------PDILSTFIRLGQEADKLGAFRI 160 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-------------HHHHHHHHHHTTCHHHHSSCCE
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-------------hHHHHHHHHHHHhCCCCCcCCE
Confidence 0 1112222 222222222 2458899999999983 3566777777764322 1478
Q ss_pred EEEEEcCCC---CCCCccccCCCCCCe-EEEeCCCCCHHHHHHHHHHHHhc----CCCCCCCCHHHHHHhcCCC------
Q psy450 340 FILGATNRV---DLLDPAILRPGRLDK-SLYVGLYEDRISQLGVLKAVVRK----FKLSDDVSLDSLVHHFPSQ------ 405 (478)
Q Consensus 340 ~vI~ttn~~---~~ld~~l~~~~Rf~~-~i~~~~pp~~~~r~~il~~~~~~----~~~~~~~~~~~la~~~~~~------ 405 (478)
.+|++||.+ ..+++.+.+ ||.. .+.++. ++.++...+++..+.. ..++ +..+..++..+ .+
T Consensus 161 ~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~p-l~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~l~~~~-~~~~~~~~ 235 (389)
T 1fnn_A 161 ALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSP-YTKDQIFDILLDRAKAGLAEGSYS-EDILQMIADIT-GAQTPLDT 235 (389)
T ss_dssp EEEEEESSTHHHHTSCHHHHH--HHTTCEEECCC-CBHHHHHHHHHHHHHHHBCTTSSC-HHHHHHHHHHH-SBSSTTCT
T ss_pred EEEEEECCchHHHHhCHHhhh--cCCCceEEeCC-CCHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHH-hhcccCCC
Confidence 899999988 667888877 8775 788875 7888999999887754 1222 22255666665 21
Q ss_pred --CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 406 --MSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 406 --~sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
-..+.+.++|+.|+..|..+. ...++.+|+..|
T Consensus 236 ~~G~~r~~~~~l~~a~~~a~~~~----------~~~i~~~~v~~~ 270 (389)
T 1fnn_A 236 NRGDARLAIDILYRSAYAAQQNG----------RKHIAPEDVRKS 270 (389)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHTT----------CSSCCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhC----------CCCcCHHHHHHH
Confidence 244567788888876665432 346899999988
No 78
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.64 E-value=1.8e-15 Score=145.50 Aligned_cols=147 Identities=17% Similarity=0.225 Sum_probs=122.4
Q ss_pred chhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhhccCCCcEEEEe-
Q psy450 29 YHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL- 94 (478)
Q Consensus 29 ~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via- 94 (478)
...++.+|. .++..+|+||||||+|.+++++ .+..++..+|+. ....+++||+
T Consensus 96 ~~~~~~~~~-~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~------------~~~~~~~vI~t 162 (285)
T 3h4m_A 96 ASLVKDIFK-LAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF------------DARGDVKIIGA 162 (285)
T ss_dssp HHHHHHHHH-HHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT------------CSSSSEEEEEE
T ss_pred HHHHHHHHH-HHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC------------CCCCCEEEEEe
Confidence 447888999 9999999999999999997533 345555555532 3455687887
Q ss_pred ------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy450 95 ------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKM 166 (478)
Q Consensus 95 ------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~ 166 (478)
+|++++| ||+..++++.|+.++|.+||+.++... .+..+.++ ..++..+.|+++++++.+|+.|...+.
T Consensus 163 tn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~--~~~~~~~~-~~l~~~~~g~~~~~i~~l~~~a~~~a~ 239 (285)
T 3h4m_A 163 TNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM--NLAEDVNL-EEIAKMTEGCVGAELKAICTEAGMNAI 239 (285)
T ss_dssp CSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCH-HHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcC--CCCCcCCH-HHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999999876 44556676 999999999999999999999999998
Q ss_pred HhhcCCCCCCCHHHHHHHHHHhhhhccc
Q psy450 167 LKQGINKRDLQKEDFQQIYDDLQSRYSD 194 (478)
Q Consensus 167 ~~~~~~~~~it~~d~~~a~~~~~~~~~~ 194 (478)
.+ ....|+.+|+..++..+.+....
T Consensus 240 ~~---~~~~I~~~d~~~al~~~~~~~~~ 264 (285)
T 3h4m_A 240 RE---LRDYVTMDDFRKAVEKIMEKKKV 264 (285)
T ss_dssp HT---TCSSBCHHHHHHHHHHHHHHHCC
T ss_pred Hh---ccCcCCHHHHHHHHHHHHhcccc
Confidence 65 46679999999999998765543
No 79
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=1e-15 Score=159.60 Aligned_cols=196 Identities=20% Similarity=0.258 Sum_probs=123.9
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHhhhhh-------CCC----CCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEech
Q psy450 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNRT-------SGL----KRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGP 268 (478)
Q Consensus 200 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~-------~~~----~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~ 268 (478)
.+.+.+|++++|.+.+++.+.+.+...... .|. .++++||+||||||||++|+++|++++.+++.++++
T Consensus 32 kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 32 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 111 (516)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 345668999999999999999988764211 111 257899999999999999999999999999999987
Q ss_pred hhhhhhhcchHH-------HHHHHHHHh-----HhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCC
Q psy450 269 ELLNKYIGQSEE-------NIRNVFLKA-----RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTS 336 (478)
Q Consensus 269 ~l~~~~~g~~~~-------~~~~~~~~a-----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 336 (478)
+........... .+..+|..+ ....++||+|||+|.+.... ...+..++..++. ..
T Consensus 112 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~----------~~~l~~L~~~l~~--~~ 179 (516)
T 1sxj_A 112 DVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD----------RGGVGQLAQFCRK--TS 179 (516)
T ss_dssp SCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS----------TTHHHHHHHHHHH--CS
T ss_pred CcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh----------HHHHHHHHHHHHh--cC
Confidence 754332111000 011222222 23567899999999997532 1123444444442 22
Q ss_pred CCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhc--CCCCCCCCHHHHHHhcCCCCCHHHHHHH
Q psy450 337 QDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRK--FKLSDDVSLDSLVHHFPSQMSGADIYSI 414 (478)
Q Consensus 337 ~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~~~~sg~di~~l 414 (478)
..+++++++.....++ .++ |+...+.++. |+.+++.++++..+.. ..++++. +..++..+ . +|++.+
T Consensus 180 ~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~-~~~~~~~~~L~~i~~~~~~~i~~~~-l~~la~~s-~----GdiR~~ 248 (516)
T 1sxj_A 180 TPLILICNERNLPKMR-PFD---RVCLDIQFRR-PDANSIKSRLMTIAIREKFKLDPNV-IDRLIQTT-R----GDIRQV 248 (516)
T ss_dssp SCEEEEESCTTSSTTG-GGT---TTSEEEECCC-CCHHHHHHHHHHHHHHHTCCCCTTH-HHHHHHHT-T----TCHHHH
T ss_pred CCEEEEEcCCCCccch-hhH---hceEEEEeCC-CCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHc-C----CcHHHH
Confidence 2344444333333343 344 4456888886 7899998998776654 3444443 77777765 2 355555
Q ss_pred HHHH
Q psy450 415 CSNA 418 (478)
Q Consensus 415 ~~~a 418 (478)
++..
T Consensus 249 i~~L 252 (516)
T 1sxj_A 249 INLL 252 (516)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 80
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.63 E-value=1.6e-15 Score=165.71 Aligned_cols=223 Identities=17% Similarity=0.232 Sum_probs=154.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh----------CCcEEEEechhhh-
Q psy450 203 NVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC----------RMNFLAVKGPELL- 271 (478)
Q Consensus 203 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~----------~~~~~~v~~~~l~- 271 (478)
...+++++|.+..++.+.+.+... .+.+++|+||||||||++|+++++.+ +.+++.++...+.
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~ 255 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA 255 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C
T ss_pred cCCCCCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc
Confidence 346889999999988887765422 36789999999999999999999987 6678888877766
Q ss_pred -hhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC-
Q psy450 272 -NKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD- 349 (478)
Q Consensus 272 -~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~- 349 (478)
..+.|..+..++.++..+....++||||||+|.+.+..+... + .....+ .+..+....++.+|++||.++
T Consensus 256 ~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~---~-~~~~~~----~L~~~l~~~~~~~I~at~~~~~ 327 (758)
T 1r6b_X 256 GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG---G-QVDAAN----LIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_dssp CCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSS---C-HHHHHH----HHSSCSSSCCCEEEEEECHHHH
T ss_pred cccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCc---c-hHHHHH----HHHHHHhCCCeEEEEEeCchHH
Confidence 356788889999999999887889999999999987543211 1 112222 233333456788999998653
Q ss_pred ----CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhc------CCCCCCCCHHHHHHh----cCCCCCHHHHHHHH
Q psy450 350 ----LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRK------FKLSDDVSLDSLVHH----FPSQMSGADIYSIC 415 (478)
Q Consensus 350 ----~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~------~~~~~~~~~~~la~~----~~~~~sg~di~~l~ 415 (478)
.+|+++.+ ||+ .+.++. |+.+++.+|++.+... ..++.+ .+..++.. ..+.+.+..+..++
T Consensus 328 ~~~~~~d~aL~~--Rf~-~i~v~~-p~~~e~~~il~~l~~~~~~~~~v~~~~~-al~~~~~~s~~~i~~~~lp~~~i~ll 402 (758)
T 1r6b_X 328 SNIFEKDRALAR--RFQ-KIDITE-PSIEETVQIINGLKPKYEAHHDVRYTAK-AVRAAVELAVKYINDRHLPDKAIDVI 402 (758)
T ss_dssp HCCCCCTTSSGG--GEE-EEECCC-CCHHHHHHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHHHCTTSCTTHHHHHHH
T ss_pred hhhhhcCHHHHh--Cce-EEEcCC-CCHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHhhhhcccccCchHHHHHH
Confidence 46889999 997 688886 7899999999887654 222222 13334432 23446666788888
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccccHHHHHhchh
Q psy450 416 SNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGACS 450 (478)
Q Consensus 416 ~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A~~ 450 (478)
.+|+..+... . .......|+.+|+.++++
T Consensus 403 d~a~~~~~~~--~----~~~~~~~v~~~di~~~~~ 431 (758)
T 1r6b_X 403 DEAGARARLM--P----VSKRKKTVNVADIESVVA 431 (758)
T ss_dssp HHHHHHHHHS--S----SCCCCCSCCHHHHHHHHH
T ss_pred HHHHHHHhcc--c----ccccCCccCHHHHHHHHH
Confidence 8776433221 0 011245689999999943
No 81
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.63 E-value=1.4e-15 Score=143.95 Aligned_cols=138 Identities=15% Similarity=0.195 Sum_probs=113.9
Q ss_pred chhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhhccCCCcEEEEe-
Q psy450 29 YHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL- 94 (478)
Q Consensus 29 ~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via- 94 (478)
..+++.+|+ .++...|+++|+||+|.++..+ .++.++.+|++. .....++++|
T Consensus 94 ~~~i~~~~~-~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~------------~~~~~~i~~a~ 160 (254)
T 1ixz_A 94 AARVRDLFE-TAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF------------EKDTAIVVMAA 160 (254)
T ss_dssp HHHHHHHHH-HHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTC------------CTTCCEEEEEE
T ss_pred HHHHHHHHH-HHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCC------------CCCCCEEEEEc
Confidence 457889998 8887889999999999987543 356677777742 3445577777
Q ss_pred ------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy450 95 ------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKM 166 (478)
Q Consensus 95 ------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~ 166 (478)
+|++++| ||++.++++.|+.++|.+||+.+.+.. ++..+.++ ..++..|+||+|+|++.++++|+..+.
T Consensus 161 t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~--~~~~~~~~-~~la~~~~G~~~~dl~~~~~~a~~~a~ 237 (254)
T 1ixz_A 161 TNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK--PLAEDVDL-ALLAKRTPGFVGADLENLLNEAALLAA 237 (254)
T ss_dssp ESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS--CBCTTCCH-HHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC--CCCcccCH-HHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999998766 55666777 999999999999999999999999887
Q ss_pred HhhcCCCCCCCHHHHHHHH
Q psy450 167 LKQGINKRDLQKEDFQQIY 185 (478)
Q Consensus 167 ~~~~~~~~~it~~d~~~a~ 185 (478)
.+ +...|+.+|+..++
T Consensus 238 ~~---~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 238 RE---GRRKITMKDLEEAA 253 (254)
T ss_dssp HT---TCSSBCHHHHHHHT
T ss_pred Hh---cCCCcCHHHHHHHh
Confidence 54 45679999998775
No 82
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.63 E-value=1.8e-15 Score=167.07 Aligned_cols=201 Identities=20% Similarity=0.313 Sum_probs=130.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh----------CCcEEEEechhhh-
Q psy450 203 NVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC----------RMNFLAVKGPELL- 271 (478)
Q Consensus 203 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~----------~~~~~~v~~~~l~- 271 (478)
+..+++++|.++....+...+.. ..+++++|+||||||||++++++|+.+ +.+++.++++.+.
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~ 239 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA 239 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----
T ss_pred cCCCcccCCcHHHHHHHHHHHhc------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc
Confidence 34688999999888888776532 125679999999999999999999987 8899999998886
Q ss_pred -hhhhcchHHHHHHHHHHhHhC-CCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC
Q psy450 272 -NKYIGQSEENIRNVFLKARSA-APCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349 (478)
Q Consensus 272 -~~~~g~~~~~~~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 349 (478)
..+.|..+..+..++..+... .|+||||||+|.+.+.....+ . ..+.+.+...++ ..++.+|++||.++
T Consensus 240 g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g--~---~~~~~~L~~~l~----~~~i~~I~at~~~~ 310 (854)
T 1qvr_A 240 GAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG--A---VDAGNMLKPALA----RGELRLIGATTLDE 310 (854)
T ss_dssp ------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------------HHHHH----TTCCCEEEEECHHH
T ss_pred cCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc--h---HHHHHHHHHHHh----CCCeEEEEecCchH
Confidence 567788888999999988765 689999999999986543211 1 122333333333 34577888888764
Q ss_pred ----CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCC------CCCCCCHHHHHHh----cCCCCCHHHHHHHH
Q psy450 350 ----LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFK------LSDDVSLDSLVHH----FPSQMSGADIYSIC 415 (478)
Q Consensus 350 ----~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~------~~~~~~~~~la~~----~~~~~sg~di~~l~ 415 (478)
.+++++.+ ||+. +.++. |+.+++..|++.++.... ++++ .+..++.. .++.|.+.....++
T Consensus 311 ~~~~~~d~aL~r--Rf~~-i~l~~-p~~~e~~~iL~~~~~~~~~~~~~~i~~~-al~~~~~ls~r~i~~~~lp~kai~ll 385 (854)
T 1qvr_A 311 YREIEKDPALER--RFQP-VYVDE-PTVEETISILRGLKEKYEVHHGVRISDS-AIIAAATLSHRYITERRLPDKAIDLI 385 (854)
T ss_dssp HHHHTTCTTTCS--CCCC-EEECC-CCHHHHHHHHHHHHHHHHHHTTCEECHH-HHHHHHHHHHHHCCSSCTHHHHHHHH
T ss_pred HhhhccCHHHHh--CCce-EEeCC-CCHHHHHHHHHhhhhhhhhhcCCCCCHH-HHHHHHHHHhhhcccccChHHHHHHH
Confidence 47999999 9986 88986 689999999987765332 2211 13333332 34567777777777
Q ss_pred HHHHHHHH
Q psy450 416 SNAWTRAI 423 (478)
Q Consensus 416 ~~a~~~a~ 423 (478)
.+|+..+.
T Consensus 386 dea~a~~~ 393 (854)
T 1qvr_A 386 DEAAARLR 393 (854)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77765443
No 83
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.63 E-value=8.4e-16 Score=145.88 Aligned_cols=150 Identities=12% Similarity=0.166 Sum_probs=111.6
Q ss_pred CccchhhhhHHHHhhhhcCCCeEEEecccccccch--------------hhHhhhccccccccccccchhhhccCCCcEE
Q psy450 26 TPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK--------------YVYFKLCSFDSVNVKSNETKDQQCKQQHKKK 91 (478)
Q Consensus 26 ~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r--------------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~ 91 (478)
......++.+|. .++...|+||||||+|.++..+ .++.++..+|.. ....+++
T Consensus 81 ~~~~~~~~~~~~-~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~------------~~~~~~~ 147 (262)
T 2qz4_A 81 GLGAARVRSLFK-EARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM------------GTTDHVI 147 (262)
T ss_dssp THHHHHHHHHHH-HHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTC------------CTTCCEE
T ss_pred ChhHHHHHHHHH-HHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCc------------CCCCCEE
Confidence 334557889999 8988899999999999997543 456677777743 3345677
Q ss_pred EEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhH-HHHHHHhcCCCCHHHHHHHHHHH
Q psy450 92 LVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASL-VEYLSSVTSGFERHDLTCLVRLS 161 (478)
Q Consensus 92 via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~-i~~la~~t~G~s~~di~~l~~~a 161 (478)
||+ +|++++| ||+..++++.|+.++|.+||+.++...+ +..+.+. ...++..+.||+++++..++++|
T Consensus 148 vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~--~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a 225 (262)
T 2qz4_A 148 VLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK--LTQSSTFYSQRLAELTPGFSGADIANICNEA 225 (262)
T ss_dssp EEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT--CCBTHHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred EEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC--CCcchhhHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 777 8899999 9999999999999999999999998874 3333332 37899999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHhhhhcc
Q psy450 162 VKNKMLKQGINKRDLQKEDFQQIYDDLQSRYS 193 (478)
Q Consensus 162 ~~~a~~~~~~~~~~it~~d~~~a~~~~~~~~~ 193 (478)
+..+..+ +...|+.+||..++..+.++..
T Consensus 226 ~~~a~~~---~~~~i~~~d~~~a~~~~~~~~~ 254 (262)
T 2qz4_A 226 ALHAARE---GHTSVHTLNFEYAVERVLAGTA 254 (262)
T ss_dssp HTC-----------CCBCCHHHHHHHHHHHHH
T ss_pred HHHHHHc---CCCCCCHHHHHHHHHHhccChh
Confidence 9988754 4567999999999998876543
No 84
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.62 E-value=2.9e-15 Score=154.14 Aligned_cols=186 Identities=19% Similarity=0.298 Sum_probs=127.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh----------CCcEEEEechhhhh
Q psy450 203 NVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC----------RMNFLAVKGPELLN 272 (478)
Q Consensus 203 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~----------~~~~~~v~~~~l~~ 272 (478)
+..+++++|.+..++.+...+.. ....++||+||||||||++|+++|+.+ +.+++.+++. .
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~ 246 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---T 246 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------
T ss_pred cCCCCCccCcHHHHHHHHHHHhc------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---c
Confidence 45688999999999988877653 125679999999999999999999997 7788888877 6
Q ss_pred hhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC---
Q psy450 273 KYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD--- 349 (478)
Q Consensus 273 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~--- 349 (478)
.+.|..+..++.+|..+....++||||| . . ....+.|+..+ ..+.+.+|++||.++
T Consensus 247 ~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~-~-----------~~a~~~L~~~L----~~g~v~vI~at~~~e~~~ 305 (468)
T 3pxg_A 247 KYRGEFEDRLKKVMDEIRQAGNIILFID-----A-A-----------IDASNILKPSL----ARGELQCIGATTLDEYRK 305 (468)
T ss_dssp ------CTTHHHHHHHHHTCCCCEEEEC-----C--------------------CCCT----TSSSCEEEEECCTTTTHH
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEe-----C-c-----------hhHHHHHHHhh----cCCCEEEEecCCHHHHHH
Confidence 6778777888999999988888999999 1 0 11223343333 345789999999987
Q ss_pred --CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-----CCHHHHHHhc----CCCCCHHHHHHHHHHH
Q psy450 350 --LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-----VSLDSLVHHF----PSQMSGADIYSICSNA 418 (478)
Q Consensus 350 --~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-----~~~~~la~~~----~~~~sg~di~~l~~~a 418 (478)
.+++++++ ||. .+.++. |+.+++..|++.+........+ ..+..++... .+.+.+.....++..|
T Consensus 306 ~~~~~~al~~--Rf~-~i~v~~-p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a 381 (468)
T 3pxg_A 306 YIEKDAALER--RFQ-PIQVDQ-PSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEA 381 (468)
T ss_dssp HHTTCSHHHH--SEE-EEECCC-CCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHH
T ss_pred HhhcCHHHHH--hCc-cceeCC-CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHH
Confidence 58999999 997 588886 6999999999987765321111 1133343322 3334455677777777
Q ss_pred HHHH
Q psy450 419 WTRA 422 (478)
Q Consensus 419 ~~~a 422 (478)
+..+
T Consensus 382 ~~~~ 385 (468)
T 3pxg_A 382 GSKV 385 (468)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 85
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.62 E-value=1.3e-15 Score=136.27 Aligned_cols=151 Identities=19% Similarity=0.306 Sum_probs=108.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh----------CCcEEEEechhhhh
Q psy450 203 NVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC----------RMNFLAVKGPELLN 272 (478)
Q Consensus 203 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~----------~~~~~~v~~~~l~~ 272 (478)
...+++++|.+...+.+.+.+.. ..+.+++|+||||||||++++++++.+ +.+++.+++..+..
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIA 91 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHH
T ss_pred ccccchhhcchHHHHHHHHHHhC------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhc
Confidence 34588999999988887776543 226679999999999999999999987 77888888877653
Q ss_pred h--hhcchHHHHHHHHHHhHhC-CCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC
Q psy450 273 K--YIGQSEENIRNVFLKARSA-APCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349 (478)
Q Consensus 273 ~--~~g~~~~~~~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 349 (478)
. +.+.....+..++..+... .|.+|+|||+|.+.+.+....... .+.+.+...++ ..++.+|+++|.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~----~~~~~l~~~~~----~~~~~ii~~~~~~~ 163 (187)
T 2p65_A 92 GAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGAL----DAGNILKPMLA----RGELRCIGATTVSE 163 (187)
T ss_dssp HCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSC----CTHHHHHHHHH----TTCSCEEEEECHHH
T ss_pred CCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccch----HHHHHHHHHHh----cCCeeEEEecCHHH
Confidence 2 3455566677777776554 678999999999986543111111 12233333333 24677888888765
Q ss_pred -----CCCccccCCCCCCeEEEeCCC
Q psy450 350 -----LLDPAILRPGRLDKSLYVGLY 370 (478)
Q Consensus 350 -----~ld~~l~~~~Rf~~~i~~~~p 370 (478)
.+++++++ ||.. +.++.|
T Consensus 164 ~~~~~~~~~~l~~--R~~~-i~i~~p 186 (187)
T 2p65_A 164 YRQFIEKDKALER--RFQQ-ILVEQP 186 (187)
T ss_dssp HHHHTTTCHHHHH--HEEE-EECCSC
T ss_pred HHHHHhccHHHHH--hcCc-ccCCCC
Confidence 58999999 9984 888763
No 86
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.61 E-value=3.7e-15 Score=162.67 Aligned_cols=188 Identities=20% Similarity=0.305 Sum_probs=130.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh----------CCcEEEEechhhh
Q psy450 202 PNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC----------RMNFLAVKGPELL 271 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~----------~~~~~~v~~~~l~ 271 (478)
....+++++|.++.++.+...+.. ....++||+||||||||++|+++|+.+ +.+++.+++ .
T Consensus 175 ~~~~ld~iiG~~~~i~~l~~~l~~------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g 245 (758)
T 3pxi_A 175 KEDSLDPVIGRSKEIQRVIEVLSR------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---G 245 (758)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------
T ss_pred hhCCCCCccCchHHHHHHHHHHhC------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---c
Confidence 345688999999999998877653 125679999999999999999999997 778888877 5
Q ss_pred hhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC--
Q psy450 272 NKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD-- 349 (478)
Q Consensus 272 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~-- 349 (478)
..|.|..+..++.+|..+....|+||||| .. ....+.|+..++ .+.+.+|++||..+
T Consensus 246 ~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~------------~~~~~~L~~~l~----~~~v~~I~at~~~~~~ 304 (758)
T 3pxi_A 246 TKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA------------IDASNILKPSLA----RGELQCIGATTLDEYR 304 (758)
T ss_dssp -------CTTHHHHHHHHHTCCCCEEEEC-----C--------------------CCCTT----SSSCEEEEECCTTTTH
T ss_pred ccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc------------hhHHHHHHHHHh----cCCEEEEeCCChHHHH
Confidence 56778888899999999998889999999 10 112233433333 56789999999988
Q ss_pred ---CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCC-----HHHHHH----hcCCCCCHHHHHHHHHH
Q psy450 350 ---LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVS-----LDSLVH----HFPSQMSGADIYSICSN 417 (478)
Q Consensus 350 ---~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~-----~~~la~----~~~~~~sg~di~~l~~~ 417 (478)
.++++++| || ..+.++. |+.+++..|++.+.........+. +..++. ..++++.+.....++..
T Consensus 305 ~~~~~d~al~r--Rf-~~i~v~~-p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~ 380 (758)
T 3pxi_A 305 KYIEKDAALER--RF-QPIQVDQ-PSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDE 380 (758)
T ss_dssp HHHTTCSHHHH--SE-EEEECCC-CCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHH
T ss_pred HHhhccHHHHh--hC-cEEEeCC-CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHH
Confidence 69999999 99 5699987 699999999998776533222222 333332 23456777777777777
Q ss_pred HHHHHH
Q psy450 418 AWTRAI 423 (478)
Q Consensus 418 a~~~a~ 423 (478)
|+..+.
T Consensus 381 a~~~~~ 386 (758)
T 3pxi_A 381 AGSKVR 386 (758)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765443
No 87
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.60 E-value=6e-15 Score=142.80 Aligned_cols=152 Identities=18% Similarity=0.251 Sum_probs=120.0
Q ss_pred cchhhhhHHHHhhhhcCCCeEEEecccccccch----------hhHhhhccccccccccccchhhhccCCCcEEEEe---
Q psy450 28 RYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK----------YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL--- 94 (478)
Q Consensus 28 ~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r----------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via--- 94 (478)
....++.+|. .++..+|+||||||+|+++..+ ..+.++..+|+.... .....++||+
T Consensus 98 ~~~~~~~~~~-~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~---------~~~~~v~vi~~tn 167 (297)
T 3b9p_A 98 GEKLVRALFA-VARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN---------PDGDRIVVLAATN 167 (297)
T ss_dssp HHHHHHHHHH-HHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---------------CEEEEEEES
T ss_pred HHHHHHHHHH-HHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc---------CCCCcEEEEeecC
Confidence 3447888998 8999999999999999998653 456677777754221 1234577777
Q ss_pred ----eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhc
Q psy450 95 ----IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQG 170 (478)
Q Consensus 95 ----ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~ 170 (478)
+|++++|||+..+++++|+.++|.+||+.++...+ ...+.+.++.++..+.||+++++..+|++|+..++++..
T Consensus 168 ~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~--~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~ 245 (297)
T 3b9p_A 168 RPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQG--SPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELN 245 (297)
T ss_dssp CGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGS--CCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC
T ss_pred ChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999998763 233444459999999999999999999999998876421
Q ss_pred ---------CCCCCCCHHHHHHHHHHhhhh
Q psy450 171 ---------INKRDLQKEDFQQIYDDLQSR 191 (478)
Q Consensus 171 ---------~~~~~it~~d~~~a~~~~~~~ 191 (478)
.....|+.+||..|+..++|+
T Consensus 246 ~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s 275 (297)
T 3b9p_A 246 VEQVKCLDISAMRAITEQDFHSSLKRIRRS 275 (297)
T ss_dssp --------CCCCCCCCHHHHHHHTTSCCCS
T ss_pred hhhcccccccccCCcCHHHHHHHHHHcCCC
Confidence 124679999999998877654
No 88
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.60 E-value=8.4e-15 Score=145.15 Aligned_cols=206 Identities=16% Similarity=0.125 Sum_probs=135.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC------CcEEEEechhhhhhh
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR------MNFLAVKGPELLNKY 274 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~------~~~~~v~~~~l~~~~ 274 (478)
+.+.+|++++|.+++++.+...+... ...+++|+||||||||++++++++.++ ..++.+++++...
T Consensus 31 ~~p~~~~~i~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~-- 102 (353)
T 1sxj_D 31 YRPKNLDEVTAQDHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERG-- 102 (353)
T ss_dssp TCCSSTTTCCSCCTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCC--
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHhcC------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccc--
Confidence 45667999999999998887765422 134599999999999999999998864 4577887765311
Q ss_pred hcchHHHHHHHHHHhH----------------hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCC
Q psy450 275 IGQSEENIRNVFLKAR----------------SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQD 338 (478)
Q Consensus 275 ~g~~~~~~~~~~~~a~----------------~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 338 (478)
...++..+.... ...+.||+|||+|.+.+ ...+.|+..++.. ..+
T Consensus 103 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~-------------~~~~~Ll~~le~~--~~~ 163 (353)
T 1sxj_D 103 ----ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA-------------DAQSALRRTMETY--SGV 163 (353)
T ss_dssp ----HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-------------HHHHHHHHHHHHT--TTT
T ss_pred ----hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH-------------HHHHHHHHHHHhc--CCC
Confidence 111222111111 13457999999999863 3345666666643 335
Q ss_pred eEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHHHHHHHH
Q psy450 339 VFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADIYSICSN 417 (478)
Q Consensus 339 v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di~~l~~~ 417 (478)
..+|.++|.+..+++++++ |+. .+.++. ++.++...+++..+...++.-+ ..+..++..+ .| +.+.+.++++.
T Consensus 164 ~~~il~~~~~~~l~~~l~s--R~~-~i~~~~-~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~-~G-~~r~~~~~l~~ 237 (353)
T 1sxj_D 164 TRFCLICNYVTRIIDPLAS--QCS-KFRFKA-LDASNAIDRLRFISEQENVKCDDGVLERILDIS-AG-DLRRGITLLQS 237 (353)
T ss_dssp EEEEEEESCGGGSCHHHHH--HSE-EEECCC-CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHT-SS-CHHHHHHHHHH
T ss_pred ceEEEEeCchhhCcchhhc--cCc-eEEeCC-CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc-CC-CHHHHHHHHHH
Confidence 6677788999999999998 885 777775 6888888899887765443222 2366677665 44 34445555555
Q ss_pred HHHHHHHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 418 AWTRAIRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 418 a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
++..+-+.. ....||.+|+.++
T Consensus 238 ~~~~~~~~~---------~~~~It~~~v~~~ 259 (353)
T 1sxj_D 238 ASKGAQYLG---------DGKNITSTQVEEL 259 (353)
T ss_dssp THHHHHHHC---------SCCCCCHHHHHHH
T ss_pred HHHhcCCCc---------cCccccHHHHHHH
Confidence 543322110 1125888888887
No 89
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.59 E-value=8.7e-15 Score=140.37 Aligned_cols=138 Identities=15% Similarity=0.195 Sum_probs=113.4
Q ss_pred chhhhhHHHHhhhhcCCCeEEEecccccccch-------------hhHhhhccccccccccccchhhhccCCCcEEEEe-
Q psy450 29 YHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL- 94 (478)
Q Consensus 29 ~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via- 94 (478)
..+++.+|+ .++...|+++|+||+|.++..+ .++.++.++++. .....++++|
T Consensus 118 ~~~i~~~~~-~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg------------~~~~~~i~~a~ 184 (278)
T 1iy2_A 118 AARVRDLFE-TAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF------------EKDTAIVVMAA 184 (278)
T ss_dssp HHHHHHHHH-HHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTC------------CTTCCEEEEEE
T ss_pred HHHHHHHHH-HHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCC------------CCCCCEEEEEe
Confidence 457888998 8887889999999999987532 456667667642 3344577777
Q ss_pred ------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy450 95 ------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKM 166 (478)
Q Consensus 95 ------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~ 166 (478)
+||+++| ||++.|+|+.|+.++|.+||+.+++.. ++..+.++ ..++..++|++|+||+.++++|+..+.
T Consensus 185 t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~--~~~~~~~~-~~la~~~~G~~~~dl~~l~~~a~~~a~ 261 (278)
T 1iy2_A 185 TNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK--PLAEDVDL-ALLAKRTPGFVGADLENLLNEAALLAA 261 (278)
T ss_dssp ESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCH-HHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC--CCCcccCH-HHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999998766 55666776 899999999999999999999998887
Q ss_pred HhhcCCCCCCCHHHHHHHH
Q psy450 167 LKQGINKRDLQKEDFQQIY 185 (478)
Q Consensus 167 ~~~~~~~~~it~~d~~~a~ 185 (478)
.+ +...|+.+|+..++
T Consensus 262 ~~---~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 262 RE---GRRKITMKDLEEAA 277 (278)
T ss_dssp HT---TCCSBCHHHHHHHT
T ss_pred Hh---CCCCcCHHHHHHHh
Confidence 54 45679999998775
No 90
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=4.4e-14 Score=138.29 Aligned_cols=189 Identities=20% Similarity=0.178 Sum_probs=126.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC-----CcEEEEechhhhhhhh
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR-----MNFLAVKGPELLNKYI 275 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~-----~~~~~v~~~~l~~~~~ 275 (478)
+.+.+|++++|++.+++.+...+... ...+++|+||||||||++|+++++.+. ..++.+++++..+.
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~-- 90 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGI-- 90 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHH--
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCch--
Confidence 45667999999999999998776542 133599999999999999999999863 34777877654221
Q ss_pred cchHHHHHHHHHHh--HhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCc
Q psy450 276 GQSEENIRNVFLKA--RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDP 353 (478)
Q Consensus 276 g~~~~~~~~~~~~a--~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~ 353 (478)
......+....... ....+.+++|||+|.+.+ ...+.|+..++. ...++.+|+++|.+..+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-------------~~~~~L~~~le~--~~~~~~~i~~~~~~~~l~~ 155 (327)
T 1iqp_A 91 NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ-------------DAQQALRRTMEM--FSSNVRFILSCNYSSKIIE 155 (327)
T ss_dssp HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH-------------HHHHHHHHHHHH--TTTTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH-------------HHHHHHHHHHHh--cCCCCeEEEEeCCccccCH
Confidence 11111122211110 114578999999999862 345666666664 2456788889999999999
Q ss_pred cccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHHHHHHHHH
Q psy450 354 AILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADIYSICSNA 418 (478)
Q Consensus 354 ~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di~~l~~~a 418 (478)
.+.+ |+. .+.++. ++.++...+++..++..++.-+ ..+..++..+ .| +.+.+.++++.+
T Consensus 156 ~l~s--r~~-~~~~~~-l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~g-~~r~~~~~l~~~ 215 (327)
T 1iqp_A 156 PIQS--RCA-IFRFRP-LRDEDIAKRLRYIAENEGLELTEEGLQAILYIA-EG-DMRRAINILQAA 215 (327)
T ss_dssp HHHH--TEE-EEECCC-CCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHH-TT-CHHHHHHHHHHH
T ss_pred HHHh--hCc-EEEecC-CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHC-CC-CHHHHHHHHHHH
Confidence 9998 886 677775 6888998999888776554322 2255666655 33 334444444433
No 91
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.58 E-value=9.8e-15 Score=146.91 Aligned_cols=156 Identities=18% Similarity=0.255 Sum_probs=118.6
Q ss_pred hhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch----------hhHhhhccccccccccccchhhhccCCCcEE
Q psy450 22 NYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK----------YVYFKLCSFDSVNVKSNETKDQQCKQQHKKK 91 (478)
Q Consensus 22 ~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r----------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~ 91 (478)
.|.+... ..++.+|+ .++..+|+||||||+|.++..+ .++.++..||+... .....|+
T Consensus 187 ~~~g~~~-~~~~~~~~-~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~----------~~~~~v~ 254 (389)
T 3vfd_A 187 KYVGEGE-KLVRALFA-VARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS----------AGDDRVL 254 (389)
T ss_dssp -----CH-HHHHHHHH-HHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---------------CEE
T ss_pred cccchHH-HHHHHHHH-HHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc----------cCCCCEE
Confidence 3444443 47899999 9999999999999999997654 56677777775421 2245688
Q ss_pred EEe-------eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy450 92 LVL-------IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKN 164 (478)
Q Consensus 92 via-------ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~ 164 (478)
||| +|++++|||+..++|+.|+.++|.+||+.++...+. ..+.+.+..++..++||+++++..+++.|+..
T Consensus 255 vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~ 332 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS--PLTQKELAQLARMTDGYSGSDLTALAKDAALG 332 (389)
T ss_dssp EEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC--CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTH
T ss_pred EEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 887 999999999999999999999999999999977633 33444559999999999999999999999998
Q ss_pred HHHhh---------cCCCCCCCHHHHHHHHHHhhhh
Q psy450 165 KMLKQ---------GINKRDLQKEDFQQIYDDLQSR 191 (478)
Q Consensus 165 a~~~~---------~~~~~~it~~d~~~a~~~~~~~ 191 (478)
++++. ......|+.+||..++....++
T Consensus 333 ~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 333 PIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp HHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCCS
T ss_pred HHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCCC
Confidence 87651 1234679999999999877543
No 92
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.58 E-value=1.6e-14 Score=140.92 Aligned_cols=177 Identities=21% Similarity=0.219 Sum_probs=122.7
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh-----CCcEEEEechhhhhh
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC-----RMNFLAVKGPELLNK 273 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~-----~~~~~~v~~~~l~~~ 273 (478)
..+.+.+|++++|++.+++.+...+.. +. ..+++|+||||||||++|+++++.+ +.+++.+++++..+
T Consensus 9 ~k~~p~~~~~~~g~~~~~~~l~~~l~~-----~~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~- 81 (319)
T 2chq_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVER-----KN-IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG- 81 (319)
T ss_dssp TTTSCSSGGGSCSCHHHHHHHHTTTTT-----TC-CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC-
T ss_pred HhcCCCCHHHHhCCHHHHHHHHHHHhC-----CC-CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC-
Confidence 345667899999999999988876543 21 3349999999999999999999986 34578888765422
Q ss_pred hhcchHHHHHHHHHHh--HhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCC
Q psy450 274 YIGQSEENIRNVFLKA--RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLL 351 (478)
Q Consensus 274 ~~g~~~~~~~~~~~~a--~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~l 351 (478)
.......+....... ....+.+++|||+|.+.. ...+.|+..++. ...++.+|++||.+..+
T Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-------------~~~~~L~~~le~--~~~~~~~i~~~~~~~~l 145 (319)
T 2chq_A 82 -IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-------------DAQAALRRTMEM--YSKSCRFILSCNYVSRI 145 (319)
T ss_dssp -TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-------------HHHHTTGGGTSS--SSSSEEEEEEESCGGGS
T ss_pred -hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-------------HHHHHHHHHHHh--cCCCCeEEEEeCChhhc
Confidence 111122222222111 124578999999999862 345666667764 34568889999999999
Q ss_pred CccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhc
Q psy450 352 DPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHF 402 (478)
Q Consensus 352 d~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~ 402 (478)
.+++.+ |+. .+.++. ++.++...+++..+++.++.-+ ..+..++..+
T Consensus 146 ~~~l~s--r~~-~i~~~~-~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~ 193 (319)
T 2chq_A 146 IEPIQS--RCA-VFRFKP-VPKEAMKKRLLEICEKEGVKITEDGLEALIYIS 193 (319)
T ss_dssp CHHHHT--TCE-EEECCC-CCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTT
T ss_pred chHHHh--hCe-EEEecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 999999 885 778875 6888999999888876554322 1255555543
No 93
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.58 E-value=3.4e-16 Score=149.35 Aligned_cols=147 Identities=12% Similarity=0.192 Sum_probs=119.0
Q ss_pred chhhhhHHHHhhhhcCCCeEEEecccccccch--------------hhHhhhccccccccccccchhhhccCCCcEEEEe
Q psy450 29 YHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK--------------YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL 94 (478)
Q Consensus 29 ~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r--------------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via 94 (478)
...++.+|+ .++..+|+||||||+|.+...+ .++.++..+|+.. .....|+||+
T Consensus 89 ~~~~~~~~~-~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~~v~vi~ 156 (268)
T 2r62_A 89 ASRVRDLFE-TAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG-----------SENAPVIVLA 156 (268)
T ss_dssp SSSSSTTHH-HHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS-----------CSCSCCEEEE
T ss_pred HHHHHHHHH-HHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc-----------cCCCCEEEEE
Confidence 347889999 9998999999999999998764 4667777777532 1234577777
Q ss_pred -------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy450 95 -------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNK 165 (478)
Q Consensus 95 -------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a 165 (478)
+|++++| ||+..++|+.|+.++|.+||+.+++.. .+..+.++ +.++..+.||+|+|++.+++.|+..+
T Consensus 157 ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~--~~~~~~~~-~~la~~~~g~~g~dl~~l~~~a~~~a 233 (268)
T 2r62_A 157 ATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGV--KLANDVNL-QEVAKLTAGLAGADLANIINEAALLA 233 (268)
T ss_dssp CBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSS--CCCSSCCT-TTTTSSSCSSCHHHHHHHHHHHHHTT
T ss_pred ecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcC--CCCCccCH-HHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 8999999 999999999999999999999999776 44556666 88999999999999999999999877
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHhhhhcc
Q psy450 166 MLKQGINKRDLQKEDFQQIYDDLQSRYS 193 (478)
Q Consensus 166 ~~~~~~~~~~it~~d~~~a~~~~~~~~~ 193 (478)
..+ +...|+.+|+..++....++..
T Consensus 234 ~~~---~~~~i~~~~~~~a~~~~~~~~~ 258 (268)
T 2r62_A 234 GRN---NQKEVRQQHLKEAVERGIAGLE 258 (268)
T ss_dssp SSS---CCCSCCHHHHHTSCTTCCCCCC
T ss_pred HHh---ccCCcCHHHHHHHHHHHhhcch
Confidence 532 4568999999888887765543
No 94
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.57 E-value=8.4e-15 Score=150.65 Aligned_cols=204 Identities=17% Similarity=0.173 Sum_probs=121.3
Q ss_pred cccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCC--cEEEEech-----hhhhhhhcchHH
Q psy450 208 DIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRM--NFLAVKGP-----ELLNKYIGQSEE 280 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~--~~~~v~~~-----~l~~~~~g~~~~ 280 (478)
.++|++.++..+...+.. ..++||+||||||||++|+++++.++. ++..+.+. ++.+.+.+....
T Consensus 23 ~ivGq~~~i~~l~~al~~--------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~ 94 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS--------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALK 94 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH--------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----
T ss_pred hhHHHHHHHHHHHHHHhc--------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHh
Confidence 468999888777654432 457999999999999999999998843 55555543 222211111110
Q ss_pred HHHHHHHHhHhC---CCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC--------CCCCeEEEEEcCCCC
Q psy450 281 NIRNVFLKARSA---APCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH--------TSQDVFILGATNRVD 349 (478)
Q Consensus 281 ~~~~~~~~a~~~---~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~v~vI~ttn~~~ 349 (478)
-...|..+..+ .++|+|||||+.+. ..+.+.|+..|+.-. ..+..++|++||.+.
T Consensus 95 -~~g~~~~~~~g~l~~~~IL~IDEI~r~~-------------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lp 160 (500)
T 3nbx_X 95 -DEGRYERLTSGYLPEAEIVFLDEIWKAG-------------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELP 160 (500)
T ss_dssp ------CBCCTTSGGGCSEEEEESGGGCC-------------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCC
T ss_pred -hchhHHhhhccCCCcceeeeHHhHhhhc-------------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCC
Confidence 11223222222 46799999998765 356677777775311 112234677777532
Q ss_pred C---CCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHh-------------------------cCCCCCCCCHHHHHHh
Q psy450 350 L---LDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVR-------------------------KFKLSDDVSLDSLVHH 401 (478)
Q Consensus 350 ~---ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~-------------------------~~~~~~~~~~~~la~~ 401 (478)
. +.+++++ ||...+.++.|...+++..|++.... +..+++++ .+.++..
T Consensus 161 e~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v-~e~i~~l 237 (500)
T 3nbx_X 161 EADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHV-FELIFML 237 (500)
T ss_dssp CTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHH-HHHHHHH
T ss_pred CccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHH-HHHHHHH
Confidence 2 3458898 99999999986556888888865432 11111111 2223322
Q ss_pred c--------CCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHH
Q psy450 402 F--------PSQMSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFL 446 (478)
Q Consensus 402 ~--------~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~ 446 (478)
. ..+.+++....+++.|...|..+. ...|+.+|+.
T Consensus 238 ~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~g----------r~~Vt~eDv~ 280 (500)
T 3nbx_X 238 RQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSG----------RSAVAPVDLI 280 (500)
T ss_dssp HHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTT----------CSBCCGGGGG
T ss_pred HHHhhcCCCCCccchhHHHHHHHHHHHHHhhcC----------CccccchHHH
Confidence 2 236778877777777765555443 4467888887
No 95
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.57 E-value=6.7e-14 Score=139.73 Aligned_cols=202 Identities=18% Similarity=0.205 Sum_probs=139.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc-------------------
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------- 261 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------- 261 (478)
+.+..|++++|.+.+++.+...+.. +..++.++|+||+|||||++++++++.++..
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~-----~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSL-----GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQ 84 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHH-----TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHT
T ss_pred hCCCchhhccCcHHHHHHHHHHHHh-----CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhc
Confidence 3445789999999999999887753 2235678999999999999999999988542
Q ss_pred -----EEEEechhhhhhhhcchHHHHHHHHHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC
Q psy450 262 -----FLAVKGPELLNKYIGQSEENIRNVFLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG 332 (478)
Q Consensus 262 -----~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~ 332 (478)
++.++... ......++.++..+. ...+.||+|||+|.+. ....+.|+..++.
T Consensus 85 ~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-------------~~~~~~Ll~~le~ 145 (373)
T 1jr3_A 85 GRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-------------RHSFNALLKTLEE 145 (373)
T ss_dssp SCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-------------HHHHHHHHHHHHS
T ss_pred cCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-------------HHHHHHHHHHHhc
Confidence 23332211 011223555665554 2346899999999986 2455677777774
Q ss_pred CCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCC-CHHHHHHhcCCCCCHHHH
Q psy450 333 VHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDV-SLDSLVHHFPSQMSGADI 411 (478)
Q Consensus 333 ~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~sg~di 411 (478)
...++++|++|+.+..+.+.+++ |+ ..+.++. ++.++...+++..++..++..+. .+..++..+ +| +.+++
T Consensus 146 --~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~-l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~-~G-~~r~~ 217 (373)
T 1jr3_A 146 --PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKA-LDVEQIRHQLEHILNEEHIAHEPRALQLLARAA-EG-SLRDA 217 (373)
T ss_dssp --CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCC-CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHS-SS-CHHHH
T ss_pred --CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHC-CC-CHHHH
Confidence 34578888889988889999998 87 6778875 78999999998888665543222 255667665 44 55667
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 412 YSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 412 ~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
.+++..+...+ ...||.+++.++
T Consensus 218 ~~~l~~~~~~~--------------~~~i~~~~v~~~ 240 (373)
T 1jr3_A 218 LSLTDQAIASG--------------DGQVSTQAVSAM 240 (373)
T ss_dssp HHHHHHHHHHT--------------TTCBCHHHHHHH
T ss_pred HHHHHHHHHhc--------------CCcccHHHHHHH
Confidence 67666554211 124777777766
No 96
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=5.2e-14 Score=137.51 Aligned_cols=185 Identities=16% Similarity=0.130 Sum_probs=127.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh-----CCcEEEEechhhhhhhh
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC-----RMNFLAVKGPELLNKYI 275 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~-----~~~~~~v~~~~l~~~~~ 275 (478)
..+..|++++|.+.+++.+...+.. +..+ +++|+||||+|||++|+++++.+ +.+++.+++++..
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~---- 84 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKD-----GNMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR---- 84 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHS-----CCCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC----
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHc-----CCCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc----
Confidence 4456789999999999998887643 2223 39999999999999999999986 3457777765421
Q ss_pred cchHHHHHHHHHHhH-------hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q psy450 276 GQSEENIRNVFLKAR-------SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRV 348 (478)
Q Consensus 276 g~~~~~~~~~~~~a~-------~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~ 348 (478)
....++..+.... ...+.+|+|||+|.+.. ...+.|+..++. ...++.+|++||.+
T Consensus 85 --~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-------------~~~~~L~~~le~--~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 85 --GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-------------GAQQALRRTMEL--YSNSTRFAFACNQS 147 (323)
T ss_dssp --SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH-------------HHHHTTHHHHHH--TTTTEEEEEEESCG
T ss_pred --ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH-------------HHHHHHHHHHhc--cCCCceEEEEeCCh
Confidence 2334455554443 33478999999999862 234556666653 24567788889999
Q ss_pred CCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHhcCCCCCHHHHHHHHHHH
Q psy450 349 DLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD-VSLDSLVHHFPSQMSGADIYSICSNA 418 (478)
Q Consensus 349 ~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~sg~di~~l~~~a 418 (478)
..+.+.+++ |+. .+.++. ++.++...+++..++..++.-+ ..+..++..+ .| +.+.+.+++..+
T Consensus 148 ~~l~~~l~s--r~~-~i~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~G-~~r~a~~~l~~~ 212 (323)
T 1sxj_B 148 NKIIEPLQS--QCA-ILRYSK-LSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTA-EG-DMRQAINNLQST 212 (323)
T ss_dssp GGSCHHHHT--TSE-EEECCC-CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH-TT-CHHHHHHHHHHH
T ss_pred hhchhHHHh--hce-EEeecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CC-CHHHHHHHHHHH
Confidence 999999998 875 778875 7899999999887765443322 2255666665 33 333444444443
No 97
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.53 E-value=1.1e-13 Score=131.57 Aligned_cols=193 Identities=19% Similarity=0.166 Sum_probs=110.0
Q ss_pred CCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC---CcEEEEechhhhhh-----hh
Q psy450 204 VSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR---MNFLAVKGPELLNK-----YI 275 (478)
Q Consensus 204 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~---~~~~~v~~~~l~~~-----~~ 275 (478)
.+|++++|.+...+.+.+.+...... +.++||+||||||||++|+++++.+. .+++.++|+.+... ..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~----~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 78 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPL----DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELF 78 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTS----CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhCC----CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhc
Confidence 46889999999988888777665332 46799999999999999999999874 68999999876322 11
Q ss_pred cchHHH-------HHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC---------CCCCe
Q psy450 276 GQSEEN-------IRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH---------TSQDV 339 (478)
Q Consensus 276 g~~~~~-------~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v 339 (478)
|..... ....+..+ .+++|||||+|.+.. .....|+..++... ...++
T Consensus 79 g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ 142 (265)
T 2bjv_A 79 GHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM-------------MVQEKLLRVIEYGELERVGGSQPLQVNV 142 (265)
T ss_dssp CCC---------CCCCHHHHT---TTSEEEEESGGGSCH-------------HHHHHHHHHHHHCEECCCCC--CEECCC
T ss_pred CCcccccccccccccchhhhc---CCcEEEEechHhcCH-------------HHHHHHHHHHHhCCeecCCCcccccCCe
Confidence 211100 01122222 346999999999863 33445555554210 12357
Q ss_pred EEEEEcCCC-------CCCCccccCCCCCCeEEEeCCCCCH---HHHHHHHHHHHh----cCCCCC--CCC---HHHHHH
Q psy450 340 FILGATNRV-------DLLDPAILRPGRLDKSLYVGLYEDR---ISQLGVLKAVVR----KFKLSD--DVS---LDSLVH 400 (478)
Q Consensus 340 ~vI~ttn~~-------~~ld~~l~~~~Rf~~~i~~~~pp~~---~~r~~il~~~~~----~~~~~~--~~~---~~~la~ 400 (478)
.+|+|||.+ ..+.+.+.+ ||.. +.+.+||-. ++...+++.+++ ..+... ..+ +..+..
T Consensus 143 ~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~ 219 (265)
T 2bjv_A 143 RLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLN 219 (265)
T ss_dssp EEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHH
T ss_pred EEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHh
Confidence 899999985 246788887 8863 334443333 344445444433 233211 222 233333
Q ss_pred hcCCCCCHHHHHHHHHHHHH
Q psy450 401 HFPSQMSGADIYSICSNAWT 420 (478)
Q Consensus 401 ~~~~~~sg~di~~l~~~a~~ 420 (478)
.. -..+.+++.++++.++.
T Consensus 220 ~~-~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 220 YR-WPGNIRELKNVVERSVY 238 (265)
T ss_dssp SC-CTTHHHHHHHHHHHHHH
T ss_pred CC-CCCCHHHHHHHHHHHHH
Confidence 21 11234577777777654
No 98
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.53 E-value=8.5e-16 Score=157.79 Aligned_cols=276 Identities=13% Similarity=0.051 Sum_probs=153.7
Q ss_pred HhhccCccchhhhhHHHHhh---hhcCCCeEEEecccccccchhhH--------------hhhc------------cccc
Q psy450 21 TNYFATPRYHHLNDIVKINL---KKYNLDIFKYDEVNYLCNVKYVY--------------FKLC------------SFDS 71 (478)
Q Consensus 21 ~~~~~~~~~~~~~~if~~~a---~~~~p~ilfiDe~d~i~~~r~~~--------------~~l~------------~~d~ 71 (478)
++|.+++ + .++.+|+ .| +..+||||||||+|+++++|.-+ ++++ .+|.
T Consensus 103 ~~~~~~~-~-~~~~~f~-~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~ 179 (456)
T 2c9o_A 103 STEIKKT-E-VLMENFR-RAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFES 179 (456)
T ss_dssp CSSSCHH-H-HHHHHHH-HTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHH
T ss_pred HHhhhhh-H-HHHHHHH-HHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHH
Confidence 3444443 3 3889998 88 78899999999999999887211 1111 1111
Q ss_pred cccccccchhhhccCCCcEEEEe-------eCHhHHh--cccc--EEEeCCCC--HHHHHHHHHHHHhhcCCCCCCChhH
Q psy450 72 VNVKSNETKDQQCKQQHKKKLVL-------IRKQIQK--LFLK--TINVLPLT--EPERRLLIQYQLDCLGGDYGFDASL 138 (478)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~v~via-------ld~al~r--Rf~~--~i~~~~P~--~~~r~~il~~~~~~~~~~~~~~~~~ 138 (478)
+. ..+...++.|+|+| +|+++.| |||+ .++++.|+ .++|.+|++.++. .++
T Consensus 180 l~-------~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~---------~dl 243 (456)
T 2c9o_A 180 LQ-------KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL---------HDL 243 (456)
T ss_dssp HH-------HTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH---------HHH
T ss_pred Hh-------hccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH---------HHH
Confidence 00 01223333344445 9999988 9999 67788885 4788888876552 255
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhcccCCCCCCCCCCCcccccCcHHHHHH
Q psy450 139 VEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQSRYSDQLDAPSVPNVSWEDIGGLSKLKAE 218 (478)
Q Consensus 139 i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~k~~ 218 (478)
+.++..|+| |+|+..+|.....-. ...+.. ...+.
T Consensus 244 -~~~a~~t~g--gadl~~l~~~i~~p~-------~~~I~~-----------------------------------~lr~~ 278 (456)
T 2c9o_A 244 -DVANARPQG--GQDILSMMGQLMKPK-------KTEITD-----------------------------------KLRGE 278 (456)
T ss_dssp -HHTC-------------------------------------------------------------------------CH
T ss_pred -HHHHHhCCC--hhHHHHHHhhhcccc-------hhhHHH-----------------------------------HHHHH
Confidence 999999999 999999875311000 000000 00000
Q ss_pred HHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHHHHHHHHHhH-hCCCeEE
Q psy450 219 ILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKAR-SAAPCVV 297 (478)
Q Consensus 219 l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~-~~~p~il 297 (478)
+.. .+...+.... ...|.|+
T Consensus 279 I~~-----------------------------------------------------------~l~~~~~~g~~~v~~~Vl 299 (456)
T 2c9o_A 279 INK-----------------------------------------------------------VVNKYIDQGIAELVPGVL 299 (456)
T ss_dssp HHH-----------------------------------------------------------HHHHHHHTTSEEEEECEE
T ss_pred HHH-----------------------------------------------------------HHHHHHHhccccccceEE
Confidence 000 0011111111 0113599
Q ss_pred EEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEE---------cC---CCCCCCccccCCCCCCeEE
Q psy450 298 FFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGA---------TN---RVDLLDPAILRPGRLDKSL 365 (478)
Q Consensus 298 ~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~t---------tn---~~~~ld~~l~~~~Rf~~~i 365 (478)
+|||+|.|. ....+.|++.++... .+++|++| ++ .|+.+++.+++ ||.. +
T Consensus 300 iIDEa~~l~-------------~~a~~aLlk~lEe~~--~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~-~ 361 (456)
T 2c9o_A 300 FVDEVHMLD-------------IECFTYLHRALESSI--APIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI-I 361 (456)
T ss_dssp EEESGGGCB-------------HHHHHHHHHHTTSTT--CCEEEEEECCSEEECBTTSSCEEETTCCHHHHT--TEEE-E
T ss_pred EEechhhcC-------------HHHHHHHHHHhhccC--CCEEEEecCCccccccccccccccccCChhHHh--hcce-e
Confidence 999999996 467889999998543 34555555 33 26789999999 9977 5
Q ss_pred EeCCCCCHHHHHHHHHHHHhcCCCCCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHH
Q psy450 366 YVGLYEDRISQLGVLKAVVRKFKLSDDV-SLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDD 444 (478)
Q Consensus 366 ~~~~pp~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d 444 (478)
.++. ++.++..+|++..+...+..-+. .+..++.... .-+.+....+++.|...|..+. ...||.+|
T Consensus 362 ~~~~-~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~-~g~~r~a~~ll~~a~~~A~~~~----------~~~v~~~~ 429 (456)
T 2c9o_A 362 RTML-YTPQEMKQIIKIRAQTEGINISEEALNHLGEIGT-KTTLRYSVQLLTPANLLAKING----------KDSIEKEH 429 (456)
T ss_dssp ECCC-CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHH-HSCHHHHHHTHHHHHHHHHHTT----------CSSBCHHH
T ss_pred eCCC-CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHhhcC----------CCccCHHH
Confidence 7774 79999999998877544432221 1444444331 2356666777777766665432 45799999
Q ss_pred HHhch
Q psy450 445 FLGAC 449 (478)
Q Consensus 445 ~~~A~ 449 (478)
+.+|+
T Consensus 430 v~~~~ 434 (456)
T 2c9o_A 430 VEEIS 434 (456)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99993
No 99
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=3.2e-13 Score=133.93 Aligned_cols=191 Identities=15% Similarity=0.103 Sum_probs=123.5
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCC------------------
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRM------------------ 260 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~------------------ 260 (478)
..+.+.+|++++|++.+++.+...+. ..+..+. ++|+||+|+|||++++++++.+..
T Consensus 6 ~kyrP~~~~~~vg~~~~~~~l~~~~~----~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~ 80 (354)
T 1sxj_E 6 DKYRPKSLNALSHNEELTNFLKSLSD----QPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN 80 (354)
T ss_dssp TTTCCCSGGGCCSCHHHHHHHHTTTT----CTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------
T ss_pred hccCCCCHHHhcCCHHHHHHHHHHHh----hCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc
Confidence 34567789999999999988876541 1222244 999999999999999999996511
Q ss_pred -----------cEEEEechhhhhhhhcchHHHHHHHHHHhH--------------hCCCeEEEEcCCccccCCCCCCCCC
Q psy450 261 -----------NFLAVKGPELLNKYIGQSEENIRNVFLKAR--------------SAAPCVVFFDELDSLAPRRGQEDQS 315 (478)
Q Consensus 261 -----------~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~--------------~~~p~il~iDeid~l~~~~~~~~~~ 315 (478)
.++.++..+.. ......++..+..+. ...|.|++|||++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~--------- 147 (354)
T 1sxj_E 81 RKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT--------- 147 (354)
T ss_dssp -----CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC---------
T ss_pred ccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC---------
Confidence 12223222110 011112444444332 2357799999999965
Q ss_pred chhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCC--CC
Q psy450 316 SGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSD--DV 393 (478)
Q Consensus 316 ~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~--~~ 393 (478)
....+.++..++.. ..+..+|.+|+.++.+.+.+++ |+ ..+.++. |+.++...+++..++..++.- +.
T Consensus 148 ----~~~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~ 217 (354)
T 1sxj_E 148 ----KDAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPA-PSDSEISTILSDVVTNERIQLETKD 217 (354)
T ss_dssp ----HHHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCC-CCHHHHHHHHHHHHHHHTCEECCSH
T ss_pred ----HHHHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCC-cCHHHHHHHHHHHHHHcCCCCCcHH
Confidence 23455666666643 3357888889999999999999 98 7788875 789999999988876554431 23
Q ss_pred CHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy450 394 SLDSLVHHFPSQMSGADIYSICSNAW 419 (478)
Q Consensus 394 ~~~~la~~~~~~~sg~di~~l~~~a~ 419 (478)
.+..++..+ .| +.+++.++++.+.
T Consensus 218 ~l~~i~~~~-~G-~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 218 ILKRIAQAS-NG-NLRVSLLMLESMA 241 (354)
T ss_dssp HHHHHHHHH-TT-CHHHHHHHHTHHH
T ss_pred HHHHHHHHc-CC-CHHHHHHHHHHHH
Confidence 366777765 33 3444445554443
No 100
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=1.3e-14 Score=153.06 Aligned_cols=213 Identities=15% Similarity=0.133 Sum_probs=128.4
Q ss_pred ccccCcHHHHHHHHHHHHhhhh----hCC-CCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEe----chhhhhhhhcc
Q psy450 207 EDIGGLSKLKAEILSTFRGVNR----TSG-LKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVK----GPELLNKYIGQ 277 (478)
Q Consensus 207 ~~i~g~~~~k~~l~~~~~~~~~----~~~-~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~----~~~l~~~~~g~ 277 (478)
..+.|++.+|+.+...+..... ... ....++||+||||||||++|+++++.++..++... +..+.......
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~ 374 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVRE 374 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSG
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeec
Confidence 4689999988776433221100 000 01237999999999999999999998876654421 12221111100
Q ss_pred h----HHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC-----------CCCCeEEE
Q psy450 278 S----EENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH-----------TSQDVFIL 342 (478)
Q Consensus 278 ~----~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~vI 342 (478)
. .......+..| ..+|+||||+|.+.+ .....|+..|+.-. .+.++.||
T Consensus 375 ~~~g~~~~~~G~l~~A---~~gil~IDEid~l~~-------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 375 KGTGEYYLEAGALVLA---DGGIAVIDEIDKMRD-------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp GGTSSCSEEECHHHHH---SSSEECCTTTTCCCS-------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred cccccccccCCeeEec---CCCcEEeehhhhCCH-------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 0 00000122222 236999999999863 34556666665321 13468899
Q ss_pred EEcCCCC-------------CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCC-------C------------
Q psy450 343 GATNRVD-------------LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKL-------S------------ 390 (478)
Q Consensus 343 ~ttn~~~-------------~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~-------~------------ 390 (478)
+|||.++ .+++++++ |||..+.+..+|+.+ ...|.+..+..... +
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar 515 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR 515 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH
Confidence 9999986 89999999 998666555446777 77777776653220 0
Q ss_pred -------CCCCHHHHHHhc-------------CCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 391 -------DDVSLDSLVHHF-------------PSQMSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 391 -------~~~~~~~la~~~-------------~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
.+...+.+...+ +.+.|.+.+.++++.|...|..+. ...|+.+|+.+|
T Consensus 516 ~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~----------~~~V~~~dv~~A 583 (595)
T 3f9v_A 516 KYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMAL----------KAEVTREDAERA 583 (595)
T ss_dssp HHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTS----------SCCSSHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhC----------cCCCCHHHHHHH
Confidence 111133333331 125677778888887775554432 557999999999
No 101
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.46 E-value=1e-13 Score=134.54 Aligned_cols=190 Identities=19% Similarity=0.262 Sum_probs=113.1
Q ss_pred ccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh-----hhcch
Q psy450 207 EDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK-----YIGQS 278 (478)
Q Consensus 207 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~-----~~g~~ 278 (478)
++++|.+...+.+.+.+...... +.++||+||||||||++|+++++.. +.+|+.++|+.+... ..|..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~----~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~ 77 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPS----DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHE 77 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCST----TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCC
T ss_pred CCcEECCHHHHHHHHHHHHHhCC----CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCcc
Confidence 35788888888888777665322 5679999999999999999999966 578999998765322 11110
Q ss_pred H-------HHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC---------CCCCeEEE
Q psy450 279 E-------ENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH---------TSQDVFIL 342 (478)
Q Consensus 279 ~-------~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~vI 342 (478)
. ......|..+. .++|||||++.+.. .....|+..++... ...++.||
T Consensus 78 ~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI 141 (304)
T 1ojl_A 78 KGAFTGADKRREGRFVEAD---GGTLFLDEIGDISP-------------LMQVRLLRAIQEREVQRVGSNQTISVDVRLI 141 (304)
T ss_dssp SSCCC---CCCCCHHHHHT---TSEEEEESCTTCCH-------------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEE
T ss_pred ccccCchhhhhcCHHHhcC---CCEEEEeccccCCH-------------HHHHHHHHHHhcCEeeecCCcccccCCeEEE
Confidence 0 01122344443 35999999999963 34555666655422 12358899
Q ss_pred EEcCCC-------CCCCccccCCCCCCeEEEeCCCCCH---HHHHHHHHHHHhc----CCCC-CCCC---HHHHHHhcCC
Q psy450 343 GATNRV-------DLLDPAILRPGRLDKSLYVGLYEDR---ISQLGVLKAVVRK----FKLS-DDVS---LDSLVHHFPS 404 (478)
Q Consensus 343 ~ttn~~-------~~ld~~l~~~~Rf~~~i~~~~pp~~---~~r~~il~~~~~~----~~~~-~~~~---~~~la~~~~~ 404 (478)
++||.+ ..+.+.+.. ||. .+.+.+||-. ++...+++.+++. .+.. ...+ +..+..+. -
T Consensus 142 ~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~-w 217 (304)
T 1ojl_A 142 AATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYD-W 217 (304)
T ss_dssp EEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCC-C
T ss_pred EecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCC-C
Confidence 999985 234556666 664 4444454443 3444455555432 2211 1222 33344332 0
Q ss_pred CCCHHHHHHHHHHHHH
Q psy450 405 QMSGADIYSICSNAWT 420 (478)
Q Consensus 405 ~~sg~di~~l~~~a~~ 420 (478)
.-+.+++.+++..++.
T Consensus 218 pGnvReL~~~l~~~~~ 233 (304)
T 1ojl_A 218 PGNIRELENAIERAVV 233 (304)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 1234567777776654
No 102
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=8.2e-13 Score=130.34 Aligned_cols=157 Identities=20% Similarity=0.217 Sum_probs=109.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCC-----cEEEEechhhhhhhh
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRM-----NFLAVKGPELLNKYI 275 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~-----~~~~v~~~~l~~~~~ 275 (478)
+.+..|++++|++.+++.|...+.. |..+ +++|+||||||||++++++++.+.. .+..++.++..
T Consensus 19 ~rp~~~~~~~g~~~~~~~L~~~i~~-----g~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~---- 88 (340)
T 1sxj_C 19 YRPETLDEVYGQNEVITTVRKFVDE-----GKLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR---- 88 (340)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHT-----TCCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC----
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhc-----CCCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc----
Confidence 4567799999999999988876642 2223 4999999999999999999998732 35666654321
Q ss_pred cchHHHHHHHHHHhH------hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC
Q psy450 276 GQSEENIRNVFLKAR------SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349 (478)
Q Consensus 276 g~~~~~~~~~~~~a~------~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 349 (478)
....++..+.... ...+.|++|||+|.+.. ...+.|+..++.. .....+|.+||.+.
T Consensus 89 --~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~-------------~~~~~L~~~le~~--~~~~~~il~~n~~~ 151 (340)
T 1sxj_C 89 --GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN-------------AAQNALRRVIERY--TKNTRFCVLANYAH 151 (340)
T ss_dssp --SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH-------------HHHHHHHHHHHHT--TTTEEEEEEESCGG
T ss_pred --cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH-------------HHHHHHHHHHhcC--CCCeEEEEEecCcc
Confidence 1223333332222 12368999999999862 3456677777643 34567778889999
Q ss_pred CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCC
Q psy450 350 LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFK 388 (478)
Q Consensus 350 ~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~ 388 (478)
.+.+++++ |+. .+.+.. ++.++..++++..++..+
T Consensus 152 ~i~~~i~s--R~~-~~~~~~-l~~~~~~~~l~~~~~~~~ 186 (340)
T 1sxj_C 152 KLTPALLS--QCT-RFRFQP-LPQEAIERRIANVLVHEK 186 (340)
T ss_dssp GSCHHHHT--TSE-EEECCC-CCHHHHHHHHHHHHHTTT
T ss_pred ccchhHHh--hce-eEeccC-CCHHHHHHHHHHHHHHcC
Confidence 99999999 985 666764 677888888887775433
No 103
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.43 E-value=5.8e-14 Score=120.60 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=80.5
Q ss_pred cccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHHHHHHHH
Q psy450 208 DIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFL 287 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~ 287 (478)
+++|.+..++.+.+.+...... +.+++|+||||||||++|+++++..+ +++.+++.++.... ....+.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~----~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~ 72 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKR----TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQ 72 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTC----SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhCC----CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHH
Confidence 5788888888888887765432 55799999999999999999998888 99999998775433 345565
Q ss_pred HhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q psy450 288 KARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRV 348 (478)
Q Consensus 288 ~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~ 348 (478)
.+. +++|||||+|.+.. .....++..++.. ...++.+|+|||.+
T Consensus 73 ~a~---~~~l~lDei~~l~~-------------~~q~~Ll~~l~~~-~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 73 KAE---GGVLYVGDIAQYSR-------------NIQTGITFIIGKA-ERCRVRVIASCSYA 116 (143)
T ss_dssp HTT---TSEEEEEECTTCCH-------------HHHHHHHHHHHHH-TTTTCEEEEEEEEC
T ss_pred hCC---CCeEEEeChHHCCH-------------HHHHHHHHHHHhC-CCCCEEEEEecCCC
Confidence 554 35999999999963 2344455555432 23457788888865
No 104
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.43 E-value=2.9e-13 Score=116.52 Aligned_cols=112 Identities=15% Similarity=0.211 Sum_probs=79.8
Q ss_pred cccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhhhcchHHHHHH
Q psy450 208 DIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKYIGQSEENIRN 284 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~~g~~~~~~~~ 284 (478)
+++|.+...+.+.+.+...... +.++||+||||||||++|+++++.. +.+|+ +++..+... .....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~----~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~ 70 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSET----DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLND 70 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTC----CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHH
T ss_pred CceeCCHHHHHHHHHHHHHhCC----CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhc
Confidence 5788888888888777655322 5579999999999999999999887 67899 999876443 22344
Q ss_pred HHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q psy450 285 VFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRV 348 (478)
Q Consensus 285 ~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~ 348 (478)
.+..+. .++|||||+|.+.. .....|+..+.. ...++.+|+|||.+
T Consensus 71 ~~~~a~---~g~l~ldei~~l~~-------------~~q~~Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 71 FIALAQ---GGTLVLSHPEHLTR-------------EQQYHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp HHHHHT---TSCEEEECGGGSCH-------------HHHHHHHHHHHS--SSCSSCEEEEESSC
T ss_pred HHHHcC---CcEEEEcChHHCCH-------------HHHHHHHHHHhh--cCCCEEEEEECCcC
Confidence 555553 35999999999963 344556665543 23456788889874
No 105
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.40 E-value=4.3e-12 Score=128.22 Aligned_cols=223 Identities=13% Similarity=0.075 Sum_probs=137.2
Q ss_pred CCcccccCcHHHHHHHHHHH-HhhhhhCCCCCceEEE--eCCCCChHHHHHHHHHHHh---------CCcEEEEechhh-
Q psy450 204 VSWEDIGGLSKLKAEILSTF-RGVNRTSGLKRSGLLL--YGPPGTGKTLIAKAVATEC---------RMNFLAVKGPEL- 270 (478)
Q Consensus 204 ~~~~~i~g~~~~k~~l~~~~-~~~~~~~~~~~~~iLl--~Gp~GtGKT~la~~la~~~---------~~~~~~v~~~~l- 270 (478)
...++++|.++..+.|.+.+ .......+..+..+++ +||||+|||++++.+++.+ +..++++++...
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCC
Confidence 33478999999999998887 6544321123667999 9999999999999999876 456788886321
Q ss_pred -----hhhh---h-------cchHHH-HHHHHHHhH-hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCC
Q psy450 271 -----LNKY---I-------GQSEEN-IRNVFLKAR-SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGV 333 (478)
Q Consensus 271 -----~~~~---~-------g~~~~~-~~~~~~~a~-~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 333 (478)
.... . +.+... ...+..... ...|.+|+|||+|.+...+. .. ...+..++..+...
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~---~~----~~~l~~l~~~~~~~ 171 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR---IA----AEDLYTLLRVHEEI 171 (412)
T ss_dssp SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT---SC----HHHHHHHHTHHHHS
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC---cc----hHHHHHHHHHHHhc
Confidence 1110 0 111122 222222222 34578999999999874310 00 23455555544432
Q ss_pred C-CC--CCeEEEEEcCCCCC---CC---ccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCC---CCCCCHHHHHHh
Q psy450 334 H-TS--QDVFILGATNRVDL---LD---PAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKL---SDDVSLDSLVHH 401 (478)
Q Consensus 334 ~-~~--~~v~vI~ttn~~~~---ld---~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~---~~~~~~~~la~~ 401 (478)
. .. .++.+|++|+.++. ++ +.+.+ ++...+.++. ++.++..++++..+..... ..+.....++..
T Consensus 172 ~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~-l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 248 (412)
T 1w5s_A 172 PSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPA-YKSRELYTILEQRAELGLRDTVWEPRHLELISDV 248 (412)
T ss_dssp CCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCC-CCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHH
T ss_pred ccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCC-CCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 2 12 67888888887652 33 55666 6766677764 7888999999776643211 112225556666
Q ss_pred cCC------CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 402 FPS------QMSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 402 ~~~------~~sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
+ . | ++..+..++..|...+..+. ...++.+++..+
T Consensus 249 ~-~~~~~~~G-~p~~~~~l~~~a~~~a~~~~----------~~~i~~~~v~~~ 289 (412)
T 1w5s_A 249 Y-GEDKGGDG-SARRAIVALKMACEMAEAMG----------RDSLSEDLVRKA 289 (412)
T ss_dssp H-CGGGTSCC-CHHHHHHHHHHHHHHHHHTT----------CSSCCHHHHHHH
T ss_pred H-HHhccCCC-cHHHHHHHHHHHHHHHHHcC----------CCCCCHHHHHHH
Confidence 5 4 4 45577777877765554321 345778888777
No 106
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.37 E-value=1.5e-12 Score=99.16 Aligned_cols=75 Identities=11% Similarity=0.166 Sum_probs=68.3
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhh
Q psy450 110 LPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQ 189 (478)
Q Consensus 110 ~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~ 189 (478)
|+||.++|.+||+.+++++ ++..++++ +.||+.|+||||+||..+|++|+..++++ +...|+++||..|+..+.
T Consensus 1 plPd~~~R~~Il~~~l~~~--~~~~~~dl-~~la~~t~G~SGADi~~l~~eA~~~a~~~---~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKM--NLTRGINL-RKIAELMPGASGAEVKGVCTEAGMYALRE---RRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTS--EECTTCCH-HHHHHTCTTCCHHHHHHHHHHHHHHHHHT---TCSEECHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCC--CCCCccCH-HHHHHHcCCCCHHHHHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHH
Confidence 7899999999999999888 55678888 99999999999999999999999999876 567899999999999876
Q ss_pred h
Q psy450 190 S 190 (478)
Q Consensus 190 ~ 190 (478)
.
T Consensus 75 ~ 75 (78)
T 3kw6_A 75 Q 75 (78)
T ss_dssp C
T ss_pred h
Confidence 4
No 107
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.35 E-value=2.3e-11 Score=119.62 Aligned_cols=160 Identities=16% Similarity=0.197 Sum_probs=109.2
Q ss_pred cHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc------------------------EEEEec
Q psy450 212 LSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN------------------------FLAVKG 267 (478)
Q Consensus 212 ~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~------------------------~~~v~~ 267 (478)
+++..+.+...+. .+..++.+||+||||+|||++|+++|+.+.+. ++.++.
T Consensus 7 ~~~~~~~l~~~i~-----~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 81 (334)
T 1a5t_A 7 LRPDFEKLVASYQ-----AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAP 81 (334)
T ss_dssp GHHHHHHHHHHHH-----TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECC
T ss_pred hHHHHHHHHHHHH-----cCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEec
Confidence 4555555555443 23336779999999999999999999987542 333332
Q ss_pred hhhhhhhhcchHHHHHHHHHHhHh----CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEE
Q psy450 268 PELLNKYIGQSEENIRNVFLKARS----AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILG 343 (478)
Q Consensus 268 ~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ 343 (478)
.+- ........++.+++.+.. ..+.|++|||+|.+. ....+.|++.++. +..++++|.
T Consensus 82 ~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~-------------~~a~naLLk~lEe--p~~~~~~Il 143 (334)
T 1a5t_A 82 EKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT-------------DAAANALLKTLEE--PPAETWFFL 143 (334)
T ss_dssp CTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC-------------HHHHHHHHHHHTS--CCTTEEEEE
T ss_pred ccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC-------------HHHHHHHHHHhcC--CCCCeEEEE
Confidence 100 011234456777776643 346899999999996 3456788888885 455788888
Q ss_pred EcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhc
Q psy450 344 ATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHF 402 (478)
Q Consensus 344 ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~ 402 (478)
+||.++.+.+.+++ |+. .+.++. ++.++...+++... .++ +..+..++..+
T Consensus 144 ~t~~~~~l~~ti~S--Rc~-~~~~~~-~~~~~~~~~L~~~~---~~~-~~~~~~l~~~s 194 (334)
T 1a5t_A 144 ATREPERLLATLRS--RCR-LHYLAP-PPEQYAVTWLSREV---TMS-QDALLAALRLS 194 (334)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCC-CCHHHHHHHHHHHC---CCC-HHHHHHHHHHT
T ss_pred EeCChHhCcHHHhh--cce-eeeCCC-CCHHHHHHHHHHhc---CCC-HHHHHHHHHHc
Confidence 99999999999999 984 678875 78888888887654 222 22245566554
No 108
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.34 E-value=1.9e-12 Score=100.18 Aligned_cols=77 Identities=9% Similarity=0.128 Sum_probs=69.6
Q ss_pred eCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHh
Q psy450 109 VLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDL 188 (478)
Q Consensus 109 ~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~ 188 (478)
-.+||.++|.+||+.+++++ ++..++++ +.||+.|+||||+||.++|++|+..++++ ....|+.+||..|+..+
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~--~l~~dvdl-~~LA~~T~G~SGADL~~l~~eAa~~alr~---~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKM--NLTRGINL-RKIAELMPGASGAEVKGVCTEAGMYALRE---RRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTS--EECTTCCC-HHHHHTCSSCCHHHHHHHHHHHHHHHHHT---TCSEECHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCC--CCCcccCH-HHHHHHcCCCCHHHHHHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHH
Confidence 46899999999999999988 56678888 99999999999999999999999999876 46789999999999998
Q ss_pred hhh
Q psy450 189 QSR 191 (478)
Q Consensus 189 ~~~ 191 (478)
.|.
T Consensus 82 ~p~ 84 (86)
T 2krk_A 82 MQK 84 (86)
T ss_dssp HCC
T ss_pred ccC
Confidence 764
No 109
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=1.2e-11 Score=119.60 Aligned_cols=142 Identities=12% Similarity=0.113 Sum_probs=102.6
Q ss_pred CcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh------CCcEEEEechhhhhhhhcchHHHHHH
Q psy450 211 GLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC------RMNFLAVKGPELLNKYIGQSEENIRN 284 (478)
Q Consensus 211 g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~------~~~~~~v~~~~l~~~~~g~~~~~~~~ 284 (478)
|++++.+.|...+.. +. ..++||+||||+|||++|+++++.+ ...++.++.+. .......++.
T Consensus 1 g~~~~~~~L~~~i~~-----~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~id~ir~ 69 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----SE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIGIDDIRT 69 (305)
T ss_dssp ---CHHHHHHHHHHT-----CS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBCHHHHHH
T ss_pred ChHHHHHHHHHHHHC-----CC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCCHHHHHH
Confidence 456666666665532 22 5679999999999999999999864 34677777542 0123445777
Q ss_pred HHHHhHhC----CCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCC
Q psy450 285 VFLKARSA----APCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGR 360 (478)
Q Consensus 285 ~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~R 360 (478)
+++.+... ...|++|||+|.+. ....+.|++.++. +..++++|.+|+.|+.+.+++++ |
T Consensus 70 li~~~~~~p~~~~~kvviIdead~lt-------------~~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~tI~S--R 132 (305)
T 2gno_A 70 IKDFLNYSPELYTRKYVIVHDCERMT-------------QQAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTIKS--R 132 (305)
T ss_dssp HHHHHTSCCSSSSSEEEEETTGGGBC-------------HHHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHHHT--T
T ss_pred HHHHHhhccccCCceEEEeccHHHhC-------------HHHHHHHHHHHhC--CCCCeEEEEEECChHhChHHHHc--e
Confidence 77777532 24799999999996 3457889999985 45567888888889999999999 8
Q ss_pred CCeEEEeCCCCCHHHHHHHHHHHH
Q psy450 361 LDKSLYVGLYEDRISQLGVLKAVV 384 (478)
Q Consensus 361 f~~~i~~~~pp~~~~r~~il~~~~ 384 (478)
.+.++. ++.++...+++..+
T Consensus 133 ---~~~f~~-l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 133 ---VFRVVV-NVPKEFRDLVKEKI 152 (305)
T ss_dssp ---SEEEEC-CCCHHHHHHHHHHH
T ss_pred ---eEeCCC-CCHHHHHHHHHHHh
Confidence 778875 56777777887665
No 110
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.32 E-value=5.9e-12 Score=133.61 Aligned_cols=217 Identities=19% Similarity=0.273 Sum_probs=130.8
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc---EEEEechhhh----
Q psy450 199 PSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN---FLAVKGPELL---- 271 (478)
Q Consensus 199 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~---~~~v~~~~l~---- 271 (478)
..+++..|++++|++.+++.+...+.. ..+++|+||||||||++|++++..+... .+.+.+....
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~--------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p 104 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ--------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMP 104 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT--------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSC
T ss_pred ccccccccceEECchhhHhhccccccC--------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCC
Confidence 346778899999999999887766542 3469999999999999999999987432 1222111000
Q ss_pred ----------hh------------------------------------------hhcchHHHHHHHHHH-----------
Q psy450 272 ----------NK------------------------------------------YIGQSEENIRNVFLK----------- 288 (478)
Q Consensus 272 ----------~~------------------------------------------~~g~~~~~~~~~~~~----------- 288 (478)
.. +..........+|..
T Consensus 105 ~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~ 184 (604)
T 3k1j_A 105 RIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGL 184 (604)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----C
T ss_pred cEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCc
Confidence 00 000000001111110
Q ss_pred ------------hHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCC-------------------CCCC
Q psy450 289 ------------ARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGV-------------------HTSQ 337 (478)
Q Consensus 289 ------------a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~-------------------~~~~ 337 (478)
.....+++|||||++.+. ...++.|+..|+.- ....
T Consensus 185 ~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~-------------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~ 251 (604)
T 3k1j_A 185 GTPAHERVEPGMIHRAHKGVLFIDEIATLS-------------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPC 251 (604)
T ss_dssp CCCGGGGEECCHHHHTTTSEEEETTGGGSC-------------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEEC
T ss_pred cccccccccCceeeecCCCEEEEechhhCC-------------HHHHHHHHHHHHcCcEEecccccccccccCCCCccce
Confidence 112245699999999985 23455555555411 1123
Q ss_pred CeEEEEEcCCC--CCCCccccCCCCCC---eEEEeCC--CCCHHHHHHHHHHHHhcC-------CCCCCCCHHHHHHhcC
Q psy450 338 DVFILGATNRV--DLLDPAILRPGRLD---KSLYVGL--YEDRISQLGVLKAVVRKF-------KLSDDVSLDSLVHHFP 403 (478)
Q Consensus 338 ~v~vI~ttn~~--~~ld~~l~~~~Rf~---~~i~~~~--pp~~~~r~~il~~~~~~~-------~~~~~~~~~~la~~~~ 403 (478)
++.||++||+. +.++++|++ ||. ..+.++. +...+....+++.+.+.. .++. .-+..++..++
T Consensus 252 ~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~-eAl~~Li~~~~ 328 (604)
T 3k1j_A 252 DFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTK-EAVEEIVREAQ 328 (604)
T ss_dssp CCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBH-HHHHHHHHHHH
T ss_pred eEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCH-HHHHHHHHHHh
Confidence 68899999986 579999999 986 4555543 234555656665443321 1221 12455555431
Q ss_pred --CC------CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhch
Q psy450 404 --SQ------MSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGAC 449 (478)
Q Consensus 404 --~~------~sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A~ 449 (478)
.| .+.+++.++++.|...|..+ ....|+.+|+.+|.
T Consensus 329 r~~g~r~~l~~~~R~l~~llr~A~~~A~~~----------~~~~I~~edv~~A~ 372 (604)
T 3k1j_A 329 KRAGRKGHLTLRLRDLGGIVRAAGDIAVKK----------GKKYVEREDVIEAV 372 (604)
T ss_dssp HTTCSTTEEECCHHHHHHHHHHHHHHHHHT----------TCSSBCHHHHHHHH
T ss_pred hhhccccccccCHHHHHHHHHHHHHHHHhc----------CcccccHHHHHHHH
Confidence 34 26889999999987555433 24579999999993
No 111
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.31 E-value=3e-12 Score=146.63 Aligned_cols=148 Identities=21% Similarity=0.322 Sum_probs=106.7
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHhhhhh---------------------------------CCCCCce--EEEeCCCC
Q psy450 200 SVPNVSWEDIGGLSKLKAEILSTFRGVNRT---------------------------------SGLKRSG--LLLYGPPG 244 (478)
Q Consensus 200 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~---------------------------------~~~~~~~--iLl~Gp~G 244 (478)
..+..+|++++|++.+|+.+.+.+.++... .|-.|+| +|+|||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 456689999999999999999998888521 0212344 99999999
Q ss_pred ChHHHHHHHHHHHh---CCcEEEEechhhh------------hhhhcc----hHHHHHHHHHHhHhCCCeEEEEcCCccc
Q psy450 245 TGKTLIAKAVATEC---RMNFLAVKGPELL------------NKYIGQ----SEENIRNVFLKARSAAPCVVFFDELDSL 305 (478)
Q Consensus 245 tGKT~la~~la~~~---~~~~~~v~~~~l~------------~~~~g~----~~~~~~~~~~~a~~~~p~il~iDeid~l 305 (478)
||||++|++++.+. +.+.+.++..+.. +++.++ +++.++.++..|+...||++++|++++|
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhc
Confidence 99999999998876 5566666665432 455566 8999999999999999999999999999
Q ss_pred cCCCC---CC-CCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q psy450 306 APRRG---QE-DQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRV 348 (478)
Q Consensus 306 ~~~~~---~~-~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~ 348 (478)
.+.+. .. +.+.+...+++++++..+++.....+++|| +||+.
T Consensus 1173 ~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1173 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred CcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 98832 22 223367778899999999987777788888 67764
No 112
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.31 E-value=1.8e-12 Score=100.34 Aligned_cols=75 Identities=29% Similarity=0.401 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhch
Q psy450 370 YEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGAC 449 (478)
Q Consensus 370 pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A~ 449 (478)
||+.++|.+||+.+++++++..++++..||+.+ +||||+||.++|++|++.|+++. ...||++||.+|
T Consensus 10 ~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T-~G~SGADL~~l~~eAa~~alr~~----------~~~I~~~df~~A- 77 (86)
T 2krk_A 10 HPNEEARLDILKIHSRKMNLTRGINLRKIAELM-PGASGAEVKGVCTEAGMYALRER----------RVHVTQEDFEMA- 77 (86)
T ss_dssp CCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTC-SSCCHHHHHHHHHHHHHHHHHTT----------CSEECHHHHHHH-
T ss_pred CcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHc----------CCCCCHHHHHHH-
Confidence 789999999999999999988899999999987 89999999999999999999885 457999999999
Q ss_pred hccCCCcccccc
Q psy450 450 SLATAPDKFSQS 461 (478)
Q Consensus 450 ~~~~~l~~~~ps 461 (478)
+++++|.
T Consensus 78 -----l~~v~p~ 84 (86)
T 2krk_A 78 -----VAKVMQK 84 (86)
T ss_dssp -----HHHHHCC
T ss_pred -----HHHHccC
Confidence 8888775
No 113
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.24 E-value=1.7e-11 Score=95.44 Aligned_cols=76 Identities=12% Similarity=0.135 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhc
Q psy450 113 TEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQSRY 192 (478)
Q Consensus 113 ~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~~~ 192 (478)
|.++|.+||+.+++++ ++..++++ +.||+.|+||||+||.++|++|+..++++ ....|+++||..|+..+.++.
T Consensus 2 d~~~R~~Il~~~~~~~--~~~~dvdl-~~lA~~t~G~SGADl~~l~~eAa~~a~r~---~~~~i~~~df~~Al~~v~~~~ 75 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSM--SVERGIRW-ELISRLCPNSTGAELRSVCTEAGMFAIRA---RRKVATEKDFLKAVDKVISGY 75 (88)
T ss_dssp CSSHHHHHHHHHHTTS--CBCSCCCH-HHHHHTCSSCCHHHHHHHHHHHHHHHHHH---SCSSBCHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHCCC--CCCCccCH-HHHHHHcCCCcHHHHHHHHHHHHHHHHHh---ccccCCHHHHHHHHHHHhcCc
Confidence 5679999999999988 66778888 99999999999999999999999999976 457899999999999998765
Q ss_pred cc
Q psy450 193 SD 194 (478)
Q Consensus 193 ~~ 194 (478)
..
T Consensus 76 ~~ 77 (88)
T 3vlf_B 76 KK 77 (88)
T ss_dssp --
T ss_pred cc
Confidence 44
No 114
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.21 E-value=6.9e-12 Score=96.73 Aligned_cols=79 Identities=29% Similarity=0.384 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhchhc
Q psy450 372 DRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGACSL 451 (478)
Q Consensus 372 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A~~~ 451 (478)
+.++|.+||+.+++++++..++++..++..+ +||||+||.++|++|+..|+++. ...||++||..|
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t-~G~SGADi~~l~~eA~~~a~~~~----------~~~i~~~df~~A--- 67 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARP-DKISGADINSICQESGMLAVREN----------RYIVLAKDFEKA--- 67 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSS-CCCCHHHHHHHHHHHHHGGGTSC----------CSSBCHHHHHHH---
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhc----------cCCcCHHHHHHH---
Confidence 6789999999999999988899999999987 89999999999999999998764 457999999999
Q ss_pred cCCCccccccccccccc
Q psy450 452 ATAPDKFSQSVAPDNYS 468 (478)
Q Consensus 452 ~~~l~~~~ps~~~~~~~ 468 (478)
+++++|+++ +++.
T Consensus 68 ---l~~~~ps~~-~~l~ 80 (83)
T 3aji_B 68 ---YKTVIKKDE-QEHE 80 (83)
T ss_dssp ---HHHHCC--------
T ss_pred ---HHHHccCch-HHHH
Confidence 999999998 5543
No 115
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.19 E-value=3.2e-11 Score=92.96 Aligned_cols=75 Identities=13% Similarity=0.200 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhhc
Q psy450 113 TEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQSRY 192 (478)
Q Consensus 113 ~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~~~ 192 (478)
|.++|.+||+.+++++ ++..++++ +.||+.|+||||+||..+|++|+..++++ ....|+++||..|+..++|+.
T Consensus 2 d~~~R~~Il~~~l~~~--~~~~~vdl-~~la~~t~G~SGADi~~l~~eA~~~a~~~---~~~~i~~~df~~Al~~~~ps~ 75 (83)
T 3aji_B 2 DRRQKRLIFSTITSKM--NLSEEVDL-EDYVARPDKISGADINSICQESGMLAVRE---NRYIVLAKDFEKAYKTVIKKD 75 (83)
T ss_dssp CHHHHHHHHHHHHTTS--CBCTTCCT-HHHHTSSCCCCHHHHHHHHHHHHHGGGTS---CCSSBCHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHhCCC--CCCcccCH-HHHHHHcCCCCHHHHHHHHHHHHHHHHHh---ccCCcCHHHHHHHHHHHccCc
Confidence 6889999999999988 56678888 99999999999999999999999999864 457899999999999998875
Q ss_pred c
Q psy450 193 S 193 (478)
Q Consensus 193 ~ 193 (478)
.
T Consensus 76 ~ 76 (83)
T 3aji_B 76 E 76 (83)
T ss_dssp -
T ss_pred h
Confidence 4
No 116
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.18 E-value=2.5e-11 Score=94.50 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhchhc
Q psy450 372 DRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGACSL 451 (478)
Q Consensus 372 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A~~~ 451 (478)
+.++|.+||+.++++.++..++++..||..+ +||||+||.++|++|++.|+++. ...||++||..|
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t-~G~SGADl~~l~~eAa~~a~r~~----------~~~i~~~df~~A--- 67 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLC-PNSTGAELRSVCTEAGMFAIRAR----------RKVATEKDFLKA--- 67 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTC-SSCCHHHHHHHHHHHHHHHHHHS----------CSSBCHHHHHHH---
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHhc----------cccCCHHHHHHH---
Confidence 4578999999999999999999999999987 89999999999999999999984 457999999999
Q ss_pred cCCCccccccccccc
Q psy450 452 ATAPDKFSQSVAPDN 466 (478)
Q Consensus 452 ~~~l~~~~ps~~~~~ 466 (478)
++++.++....+
T Consensus 68 ---l~~v~~~~~~~~ 79 (88)
T 3vlf_B 68 ---VDKVISGYKKFS 79 (88)
T ss_dssp ---HHHHTC------
T ss_pred ---HHHHhcCccccc
Confidence 999999886544
No 117
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.18 E-value=3.2e-11 Score=91.75 Aligned_cols=73 Identities=30% Similarity=0.422 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhchh
Q psy450 371 EDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGACS 450 (478)
Q Consensus 371 p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A~~ 450 (478)
|+.++|.+||+.+++++++..++++..|+..+ +||||+||.++|++|+..|+++. ...||++||..|
T Consensus 3 Pd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t-~G~SGADi~~l~~eA~~~a~~~~----------~~~i~~~d~~~A-- 69 (78)
T 3kw6_A 3 PNEEARLDILKIHSRKMNLTRGINLRKIAELM-PGASGAEVKGVCTEAGMYALRER----------RVHVTQEDFEMA-- 69 (78)
T ss_dssp CCHHHHHHHHHHHHTTSEECTTCCHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHTT----------CSEECHHHHHHH--
T ss_pred CCHHHHHHHHHHHhcCCCCCCccCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhC----------CCCCCHHHHHHH--
Confidence 79999999999999999988899999999987 89999999999999999999874 567999999999
Q ss_pred ccCCCccccc
Q psy450 451 LATAPDKFSQ 460 (478)
Q Consensus 451 ~~~~l~~~~p 460 (478)
++++..
T Consensus 70 ----l~~v~~ 75 (78)
T 3kw6_A 70 ----VAKVMQ 75 (78)
T ss_dssp ----HHHHHC
T ss_pred ----HHHHHh
Confidence 766543
No 118
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.18 E-value=7e-11 Score=113.91 Aligned_cols=127 Identities=8% Similarity=0.016 Sum_probs=82.8
Q ss_pred HHHHhhccCccchhhhhHHHHhh----hhcCCCeEEEecccccccch------------hhHhhhccccccccccccchh
Q psy450 18 HLLTNYFATPRYHHLNDIVKINL----KKYNLDIFKYDEVNYLCNVK------------YVYFKLCSFDSVNVKSNETKD 81 (478)
Q Consensus 18 ~~~~~~~~~~~~~~~~~if~~~a----~~~~p~ilfiDe~d~i~~~r------------~~~~~l~~~d~~~~~~~~~~~ 81 (478)
.+.+.|.+... ..++.+|+ .| +..+||||||||+|++++.+ +.+.+++.||......... .
T Consensus 71 ~l~~~~~g~~~-~~i~~~f~-~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~-~ 147 (293)
T 3t15_A 71 ELESGNAGEPA-KLIRQRYR-EAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG-M 147 (293)
T ss_dssp HHHCC---HHH-HHHHHHHH-HHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC--------
T ss_pred HhhhccCchhH-HHHHHHHH-HHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhcccccccccc-c
Confidence 34455555444 47889998 88 57789999999999998843 3478888888543111000 0
Q ss_pred hhccCCCcEEEEe-------eCHhHHh--ccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHH
Q psy450 82 QQCKQQHKKKLVL-------IRKQIQK--LFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERH 152 (478)
Q Consensus 82 ~~~~~~~~v~via-------ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~ 152 (478)
.......+|+||+ +|+|++| ||++.|+ .|+.++|.+|++.++... +.+. +.+++.++||+++
T Consensus 148 ~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~~------~~~~-~~l~~~~~~~~~~ 218 (293)
T 3t15_A 148 YNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRTD------NVPA-EDVVKIVDNFPGQ 218 (293)
T ss_dssp ----CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGGG------CCCH-HHHHHHHHHSCSC
T ss_pred cccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccCC------CCCH-HHHHHHhCCCCcc
Confidence 0112345577777 8999998 9999887 579999999999988653 3445 8899999999999
Q ss_pred HHHH
Q psy450 153 DLTC 156 (478)
Q Consensus 153 di~~ 156 (478)
++..
T Consensus 219 ~l~~ 222 (293)
T 3t15_A 219 SIDF 222 (293)
T ss_dssp CHHH
T ss_pred cHHH
Confidence 9864
No 119
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.09 E-value=3.1e-10 Score=101.03 Aligned_cols=134 Identities=17% Similarity=0.102 Sum_probs=75.2
Q ss_pred CCCCCcccccCc-HHHHHHHHHHHHhhhhhCCCC-CceEEEeCCCCChHHHHHHHHHHHh----CCcEEEEechhhhhhh
Q psy450 201 VPNVSWEDIGGL-SKLKAEILSTFRGVNRTSGLK-RSGLLLYGPPGTGKTLIAKAVATEC----RMNFLAVKGPELLNKY 274 (478)
Q Consensus 201 ~~~~~~~~i~g~-~~~k~~l~~~~~~~~~~~~~~-~~~iLl~Gp~GtGKT~la~~la~~~----~~~~~~v~~~~l~~~~ 274 (478)
+...+|+++++. ...++.+....... ...... +.+++|+||+|||||++++++++.+ |..+++++..++....
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 82 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFV-HNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRL 82 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHH-HSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHH
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHH-HhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 445678888763 23333333222222 111111 5679999999999999999999877 6677788887776543
Q ss_pred hcchHHH-HHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC
Q psy450 275 IGQSEEN-IRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349 (478)
Q Consensus 275 ~g~~~~~-~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~ 349 (478)
....... ....+... ..|.+|+|||++.... .......+..++.... ..+..+|.|||.+.
T Consensus 83 ~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~~--------~~~~~~~l~~ll~~~~----~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 83 KHLMDEGKDTKFLKTV--LNSPVLVLDDLGSERL--------SDWQRELISYIITYRY----NNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHTCCSHHHHHH--HTCSEEEEETCSSSCC--------CHHHHHHHHHHHHHHH----HTTCEEEEECCCCS
T ss_pred HHHhcCchHHHHHHHh--cCCCEEEEeCCCCCcC--------CHHHHHHHHHHHHHHH----HcCCCEEEEcCCCh
Confidence 2111100 00122222 2567999999975421 1222344445544432 12345677788753
No 120
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.06 E-value=9.1e-10 Score=110.90 Aligned_cols=172 Identities=13% Similarity=0.160 Sum_probs=106.6
Q ss_pred HHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhH-HHHHHHHHHhhcCCC--------CCCCeEEEEEc----
Q psy450 279 EENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVM-DRVVSQLLAEMDGVH--------TSQDVFILGAT---- 345 (478)
Q Consensus 279 ~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~-~~~~~~ll~~l~~~~--------~~~~v~vI~tt---- 345 (478)
....+..+..+..+ .++++||+|++..+.++ ...... ..+...||..+++.. +..++++|+|.
T Consensus 238 ~~~~~~ai~~ae~~--~il~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~ 313 (444)
T 1g41_A 238 EELKQKAIDAVEQN--GIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQV 313 (444)
T ss_dssp HHHHHHHHHHHHHH--CEEEEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSS
T ss_pred HHHHHHHHHHhccC--CeeeHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEecccccc
Confidence 33444555555333 39999999999865431 111222 236778999888742 35678999887
Q ss_pred CCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHH--------H---HHhcCCCCC---CCCHHHHHHh------cCCC
Q psy450 346 NRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLK--------A---VVRKFKLSD---DVSLDSLVHH------FPSQ 405 (478)
Q Consensus 346 n~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~--------~---~~~~~~~~~---~~~~~~la~~------~~~~ 405 (478)
+.|..+-|.|+. ||+..+.++. .+.++...|+. . .+...+... +.-+..+++. ++.+
T Consensus 314 ~~~~dlipel~~--R~~i~i~l~~-lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~ 390 (444)
T 1g41_A 314 ARPSDLIPELQG--RLPIRVELTA-LSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTEN 390 (444)
T ss_dssp CCGGGSCHHHHT--TCCEEEECCC-CCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCC
T ss_pred CChhhcchHHhc--ccceeeeCCC-CCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCcc
Confidence 244445578888 9999999986 79999999983 1 111111111 1125556653 2345
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhchhccCCCccccccccccccccc
Q psy450 406 MSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGACSLATAPDKFSQSVAPDNYSLS 470 (478)
Q Consensus 406 ~sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A~~~~~~l~~~~ps~~~~~~~~~ 470 (478)
..++.++.++...+..+..+.... ......||.+++.+. ..|.+...|++-+
T Consensus 391 ~GaR~L~~~ie~~~~~~~~~~~~~----~~~~~~i~~~~v~~~---------l~~~~~~~dl~~~ 442 (444)
T 1g41_A 391 IGARRLHTVMERLMDKISFSASDM----NGQTVNIDAAYVADA---------LGEVVENEDLSRF 442 (444)
T ss_dssp CGGGHHHHHHHHHHHHHHHHGGGC----TTCEEEECHHHHHHH---------HTTTTTCHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhcccc----CCCeEEEeHHHHHHh---------cCccccCCChhcc
Confidence 556778888877777766665432 123467999999887 3455555555433
No 121
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.03 E-value=1.1e-09 Score=130.99 Aligned_cols=138 Identities=21% Similarity=0.342 Sum_probs=93.6
Q ss_pred CceEEEeCCCCChHHHHHHH-HHHHhCCcEEEEechhhhhhhhcchHHHHHHHHHHhH---------------hCCCeEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKA-VATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKAR---------------SAAPCVV 297 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~-la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~---------------~~~p~il 297 (478)
.+++||+||||||||++|+. +++..+..++.++++...+ ...+...+.... .+.++|+
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 56799999999999999954 5554477788888765432 223334443320 2335799
Q ss_pred EEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCC--------CCeEEEEEcCCCC-----CCCccccCCCCCCeE
Q psy450 298 FFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTS--------QDVFILGATNRVD-----LLDPAILRPGRLDKS 364 (478)
Q Consensus 298 ~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--------~~v~vI~ttn~~~-----~ld~~l~~~~Rf~~~ 364 (478)
||||++.....+.+ +....+++.+++. ..++... .++.+|+|+|+|. .++++++| || ..
T Consensus 1341 FiDEinmp~~d~yg----~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~v 1412 (2695)
T 4akg_A 1341 FCDEINLPKLDKYG----SQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AI 1412 (2695)
T ss_dssp EEETTTCSCCCSSS----CCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EE
T ss_pred EecccccccccccC----chhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eE
Confidence 99999975543321 1222355555553 2222111 2589999999995 79999999 99 78
Q ss_pred EEeCCCCCHHHHHHHHHHHHhc
Q psy450 365 LYVGLYEDRISQLGVLKAVVRK 386 (478)
Q Consensus 365 i~~~~pp~~~~r~~il~~~~~~ 386 (478)
++++. |+.+++..|+..+++.
T Consensus 1413 i~i~~-P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1413 LYLGY-PSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EECCC-CTTTHHHHHHHHHHHH
T ss_pred EEeCC-CCHHHHHHHHHHHHHH
Confidence 99987 6899999999887754
No 122
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.01 E-value=7.5e-11 Score=90.56 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhchhccC
Q psy450 374 ISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGACSLAT 453 (478)
Q Consensus 374 ~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A~~~~~ 453 (478)
++|.+||+.+++++++..++++..++..+ +||||+||.++|++|++.|+++. ...||++||..|
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t-~G~SGADi~~l~~eAa~~ai~~~----------~~~i~~~df~~A----- 64 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRN-DSLSGAVIAAIMQEAGLRAVRKN----------RYVILQSDLEEA----- 64 (82)
T ss_dssp -------------CEECTTCCSTTTTTSS-CCCCHHHHHHHHHHHHHHHHHTT----------CSEECHHHHHHH-----
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhc----------cCCcCHHHHHHH-----
Confidence 36889999999999888899999999987 89999999999999999999874 457999999999
Q ss_pred CCcccc-cccccccccc
Q psy450 454 APDKFS-QSVAPDNYSL 469 (478)
Q Consensus 454 ~l~~~~-ps~~~~~~~~ 469 (478)
++++. |+.+.+++..
T Consensus 65 -l~~v~~~~~~~~~~~~ 80 (82)
T 2dzn_B 65 -YATQVKTDNTVDKFDF 80 (82)
T ss_dssp -HHTTCC----------
T ss_pred -HHHHHcCcCChHHHHh
Confidence 98884 6677666543
No 123
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.00 E-value=2.5e-10 Score=98.41 Aligned_cols=106 Identities=13% Similarity=0.198 Sum_probs=69.5
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRG 310 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~ 310 (478)
...++|+||+|+|||+++++++..+ |...++++..++... +...+|.+|+|||++.+....
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~- 99 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE- 99 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH-
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH-
Confidence 5679999999999999999999987 677888887765432 112356899999998865311
Q ss_pred CCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcC-CCCCCC--ccccCCCCCCeEEEeCC
Q psy450 311 QEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATN-RVDLLD--PAILRPGRLDKSLYVGL 369 (478)
Q Consensus 311 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn-~~~~ld--~~l~~~~Rf~~~i~~~~ 369 (478)
++.+..++..+. ..+..++|.||| .|..+. +.+.+ |+.....+.+
T Consensus 100 ---------~~~l~~li~~~~---~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~~l 147 (149)
T 2kjq_A 100 ---------QALLFSIFNRFR---NSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLVYEV 147 (149)
T ss_dssp ---------HHHHHHHHHHHH---HHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEECCC
T ss_pred ---------HHHHHHHHHHHH---HcCCcEEEEECCCCHHHccccHHHHH--HHhcCeeEEe
Confidence 233334444332 222332344555 454332 77887 8887777665
No 124
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.00 E-value=1.2e-09 Score=99.05 Aligned_cols=103 Identities=22% Similarity=0.235 Sum_probs=62.7
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhhhhhCCC--CCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhhhc
Q psy450 202 PNVSWEDIGGLSKLKAEILSTFRGVNRTSGL--KRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKYIG 276 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~--~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~~g 276 (478)
...+|+++.+.+...+.+.+.+......... .+.+++|+||||||||++|+++++.+ +.+++.++++++......
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKH 99 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHH
Confidence 4567888887553333222222222222111 23789999999999999999999987 678888998877654322
Q ss_pred ch-HHHHHHHHHHhHhCCCeEEEEcCCcccc
Q psy450 277 QS-EENIRNVFLKARSAAPCVVFFDELDSLA 306 (478)
Q Consensus 277 ~~-~~~~~~~~~~a~~~~p~il~iDeid~l~ 306 (478)
.. ...+...+..... +.+|+|||++...
T Consensus 100 ~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 100 SLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp C---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred HhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 11 0011223333333 3599999997654
No 125
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.94 E-value=1.4e-09 Score=105.31 Aligned_cols=141 Identities=11% Similarity=0.091 Sum_probs=97.5
Q ss_pred HhhccCccchhhhhHHHHhhhhcCCCeEEEecccccccc--------hhhHhhhccccccccccccchhhhccCCCcEEE
Q psy450 21 TNYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNV--------KYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKL 92 (478)
Q Consensus 21 ~~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~--------r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~v 92 (478)
+.+++.... .++.+|+ .+ .++||||||+|.+++. ..++.++..|+. ...++++
T Consensus 112 ~~~~g~~~~-~~~~~~~-~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~--------------~~~~~~~ 172 (309)
T 3syl_A 112 GQYIGHTAP-KTKEVLK-RA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN--------------NRDDLVV 172 (309)
T ss_dssp CSSTTCHHH-HHHHHHH-HH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHH--------------CTTTCEE
T ss_pred hhcccccHH-HHHHHHH-hc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhc--------------CCCCEEE
Confidence 344444443 6677786 54 5899999999999743 366777777773 2334455
Q ss_pred Ee------------eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHh-------cCCCCHHH
Q psy450 93 VL------------IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSV-------TSGFERHD 153 (478)
Q Consensus 93 ia------------ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~-------t~G~s~~d 153 (478)
|+ +||++++||+..++|+.|+.+++.+|++.++... ....+.+.++.++.. ...-++.+
T Consensus 173 i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~ 250 (309)
T 3syl_A 173 ILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ--NYQMTPEAETALRAYIGLRRNQPHFANARS 250 (309)
T ss_dssp EEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHT--TCEECHHHHHHHHHHHHHHTTSSSCCHHHH
T ss_pred EEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhccCCCCCcHHH
Confidence 44 4899999999999999999999999999999876 344455555777765 23345899
Q ss_pred HHHHHHHHHHHHHHhhcC-CCCCCCHHHHH
Q psy450 154 LTCLVRLSVKNKMLKQGI-NKRDLQKEDFQ 182 (478)
Q Consensus 154 i~~l~~~a~~~a~~~~~~-~~~~it~~d~~ 182 (478)
+.++++.++..+..+... ....++.+++.
T Consensus 251 l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 251 IRNALDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 999999998866533111 23455555543
No 126
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.90 E-value=3.8e-10 Score=86.56 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhh
Q psy450 115 PERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQ 189 (478)
Q Consensus 115 ~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~ 189 (478)
++|.+||+.+++++ ++..++++ +.||+.|+||||+||.++|++|+..++++ ....|+.+||..|+..+.
T Consensus 1 ~~R~~Il~~~l~~~--~~~~~vdl-~~lA~~t~G~SGADi~~l~~eAa~~ai~~---~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 1 MERRLIFGTIASKM--SLAPEADL-DSLIIRNDSLSGAVIAAIMQEAGLRAVRK---NRYVILQSDLEEAYATQV 69 (82)
T ss_dssp -------------C--EECTTCCS-TTTTTSSCCCCHHHHHHHHHHHHHHHHHT---TCSEECHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCC--CCCCcCCH-HHHHHHcCCCCHHHHHHHHHHHHHHHHHh---ccCCcCHHHHHHHHHHHH
Confidence 47999999999887 55677888 99999999999999999999999999976 457899999999999874
No 127
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.90 E-value=3.7e-08 Score=97.75 Aligned_cols=122 Identities=20% Similarity=0.338 Sum_probs=78.5
Q ss_pred ccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCc--EEEEechhhhhh-----hhcchH
Q psy450 207 EDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN--FLAVKGPELLNK-----YIGQSE 279 (478)
Q Consensus 207 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~--~~~v~~~~l~~~-----~~g~~~ 279 (478)
.+++|.+.....+.+.+...... ...++++|++||||+.+|+++....+.. |+.++|+.+... ..|...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~----~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~ 204 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKS----KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEK 204 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTS----CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECS
T ss_pred ccccccchHHHHHHhhhhhhhcc----chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccc
Confidence 35778777777777666555432 3459999999999999999998877543 999999765321 111110
Q ss_pred H-------HHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCC-----CC----CCCeEEEE
Q psy450 280 E-------NIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGV-----HT----SQDVFILG 343 (478)
Q Consensus 280 ~-------~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----~~----~~~v~vI~ 343 (478)
. .....|..|.. .+|||||++.+. ......|+..++.- .. .-++.+|+
T Consensus 205 g~~tga~~~~~g~~~~a~~---gtlfldei~~l~-------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~ 268 (368)
T 3dzd_A 205 GAFTGALTRKKGKLELADQ---GTLFLDEVGELD-------------QRVQAKLLRVLETGSFTRLGGNQKIEVDIRVIS 268 (368)
T ss_dssp CSSSSCCCCEECHHHHTTT---SEEEEETGGGSC-------------HHHHHHHHHHHHHSEECCBTCCCBEECCCEEEE
T ss_pred cccCCcccccCChHhhcCC---CeEEecChhhCC-------------HHHHHHHHHHHHhCCcccCCCCcceeeeeEEEE
Confidence 0 01124555443 499999999997 34555566555421 11 12577899
Q ss_pred EcCCC
Q psy450 344 ATNRV 348 (478)
Q Consensus 344 ttn~~ 348 (478)
+||..
T Consensus 269 at~~~ 273 (368)
T 3dzd_A 269 ATNKN 273 (368)
T ss_dssp EESSC
T ss_pred ecCCC
Confidence 99863
No 128
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.87 E-value=2.2e-08 Score=119.87 Aligned_cols=254 Identities=15% Similarity=0.127 Sum_probs=140.3
Q ss_pred cCCCeEEEecccccccch----hhHhhhcc-ccc--cccccccchhhhccCCCcEEEEe------------eCHhHHhcc
Q psy450 43 YNLDIFKYDEVNYLCNVK----YVYFKLCS-FDS--VNVKSNETKDQQCKQQHKKKLVL------------IRKQIQKLF 103 (478)
Q Consensus 43 ~~p~ilfiDe~d~i~~~r----~~~~~l~~-~d~--~~~~~~~~~~~~~~~~~~v~via------------ld~al~rRf 103 (478)
.+++||||||++.....+ .+..+|.+ ||. +-..+. .+...-.++.+|| +||+++|||
T Consensus 1335 gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~----~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf 1410 (2695)
T 4akg_A 1335 IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPE----NKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA 1410 (2695)
T ss_dssp SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTT----CCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE
T ss_pred CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCC----CcEEEecCEEEEEecCCCccCCCccCChhhhhee
Confidence 346899999999876654 22233332 231 100000 0000113466666 899999999
Q ss_pred ccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCCh-hHHHHHHH-----------hc-------CCCCHHHHHHHHHHHHHH
Q psy450 104 LKTINVLPLTEPERRLLIQYQLDCLGGDYGFDA-SLVEYLSS-----------VT-------SGFERHDLTCLVRLSVKN 164 (478)
Q Consensus 104 ~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~-~~i~~la~-----------~t-------~G~s~~di~~l~~~a~~~ 164 (478)
..++++.|+.+++..|+..+++.+- ....++ .+.+.++. .. --|+..|+..+++-....
T Consensus 1411 -~vi~i~~P~~~~l~~I~~~il~~~l-~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~~ 1488 (2695)
T 4akg_A 1411 -AILYLGYPSGKSLSQIYEIYYKAIF-KLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTA 1488 (2695)
T ss_dssp -EEEECCCCTTTHHHHHHHHHHHHHT-TSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHHH
T ss_pred -eEEEeCCCCHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHhc
Confidence 8899999999999999999986541 111111 11122221 11 147888888777654332
Q ss_pred HH---------------Hh--hcCCCCCCCHHHHH---HHHHHhhhhcccCCC--C-CCCC-------CCCcccccCcHH
Q psy450 165 KM---------------LK--QGINKRDLQKEDFQ---QIYDDLQSRYSDQLD--A-PSVP-------NVSWEDIGGLSK 214 (478)
Q Consensus 165 a~---------------~~--~~~~~~~it~~d~~---~a~~~~~~~~~~~~~--~-~~~~-------~~~~~~i~g~~~ 214 (478)
.. ++ +.-..+-++.+|-. ..+............ . ...| ...++++. .++
T Consensus 1489 ~~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f~~~~~~~~~~~~~~f~df~~~~Y~~v~-~~~ 1567 (2695)
T 4akg_A 1489 INTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSGLLSLDFKEVN-KTD 1567 (2695)
T ss_dssp HHTSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHHSCCSCCCCCSTTTCCEESSSSSSCEECC-HHH
T ss_pred CchhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccchhhhccCCceeeecCCCcceecC-HHH
Confidence 11 00 11123455555533 233322211111100 0 0000 11234442 344
Q ss_pred HHHHHHHHHHhhh----------------------hhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh
Q psy450 215 LKAEILSTFRGVN----------------------RTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN 272 (478)
Q Consensus 215 ~k~~l~~~~~~~~----------------------~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~ 272 (478)
.++.+.+.+.... +-...+..|+||+|++||||++++|..|...+..++.+..+.-.+
T Consensus 1568 l~~~l~~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~~~~~Y~ 1647 (2695)
T 4akg_A 1568 LVNFIEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSN 1647 (2695)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHHSSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCCCCTTCC
T ss_pred HHHHHHHHHHHHHhhcCCceeeeHHHHHHHHHHHHHHHcCCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEEeeCCCC
Confidence 5555555443321 111123568999999999999999999999999999887643211
Q ss_pred hhhcchHHHHHHHHHHhH-hCCCeEEEEcCCccc
Q psy450 273 KYIGQSEENIRNVFLKAR-SAAPCVVFFDELDSL 305 (478)
Q Consensus 273 ~~~g~~~~~~~~~~~~a~-~~~p~il~iDeid~l 305 (478)
..+-...++.++..|. .+.|.+++++|-+-.
T Consensus 1648 --~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~ 1679 (2695)
T 4akg_A 1648 --LSDFDMILKKAISDCSLKESRTCLIIDESNIL 1679 (2695)
T ss_dssp --HHHHHHHHHHHHHHHHHSCCCEEEEEETTTCC
T ss_pred --HHHHHHHHHHHHHHcCCCCCceEEEEeccccc
Confidence 1233456777887774 566788889887643
No 129
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.85 E-value=8.5e-09 Score=103.20 Aligned_cols=202 Identities=17% Similarity=0.226 Sum_probs=112.9
Q ss_pred cccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC---CcEEEEechhhhhh-----hhcchH
Q psy450 208 DIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR---MNFLAVKGPELLNK-----YIGQSE 279 (478)
Q Consensus 208 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~---~~~~~v~~~~l~~~-----~~g~~~ 279 (478)
.++|.+...+.+.+.+...... ..+++++|++|||||++|+++....+ .+|+.++|+.+... ..|...
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~----~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~ 213 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCA----ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEK 213 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTC----CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCT
T ss_pred hhhhccHHhhHHHHHHHHhcCC----CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCC
Confidence 4566666666666555543321 44589999999999999999988764 68999999765322 112110
Q ss_pred H-------HHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCC-----CC----CCCeEEEE
Q psy450 280 E-------NIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGV-----HT----SQDVFILG 343 (478)
Q Consensus 280 ~-------~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----~~----~~~v~vI~ 343 (478)
. .....|..|.. ++|||||++.+.. .....|+..++.- .. ..++.||+
T Consensus 214 g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~ 277 (387)
T 1ny5_A 214 GAFTGAVSSKEGFFELADG---GTLFLDEIGELSL-------------EAQAKLLRVIESGKFYRLGGRKEIEVNVRILA 277 (387)
T ss_dssp TSSTTCCSCBCCHHHHTTT---SEEEEESGGGCCH-------------HHHHHHHHHHHHSEECCBTCCSBEECCCEEEE
T ss_pred CCCCCcccccCCceeeCCC---cEEEEcChhhCCH-------------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEE
Confidence 0 01234445443 4999999999973 4455555554421 11 12578999
Q ss_pred EcCCCC-------CCCccccCCCCCCeEEEeCCCCCHHHHH---HHHHHHHhc----CCCC-CCCC---HHHHHHhcCCC
Q psy450 344 ATNRVD-------LLDPAILRPGRLDKSLYVGLYEDRISQL---GVLKAVVRK----FKLS-DDVS---LDSLVHHFPSQ 405 (478)
Q Consensus 344 ttn~~~-------~ld~~l~~~~Rf~~~i~~~~pp~~~~r~---~il~~~~~~----~~~~-~~~~---~~~la~~~~~~ 405 (478)
+||..- .+.+.+.. |+. .+.+.+||-++.+. .+...++++ .+.. ...+ +..+..+ .
T Consensus 278 at~~~l~~~~~~g~fr~dl~~--rl~-~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~---~ 351 (387)
T 1ny5_A 278 ATNRNIKELVKEGKFREDLYY--RLG-VIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSY---P 351 (387)
T ss_dssp EESSCHHHHHHTTSSCHHHHH--HHT-TEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHS---C
T ss_pred eCCCCHHHHHHcCCccHHHHH--hhc-CCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC---C
Confidence 999741 12222222 332 23344456554333 344444432 2221 1122 3333322 3
Q ss_pred CCH--HHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 406 MSG--ADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 406 ~sg--~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
+.| ++++++++.|+..+ ....|+.+|+...
T Consensus 352 wpGNvreL~~~i~~~~~~~-------------~~~~i~~~~l~~~ 383 (387)
T 1ny5_A 352 WYGNVRELKNVIERAVLFS-------------EGKFIDRGELSCL 383 (387)
T ss_dssp CTTHHHHHHHHHHHHHHHC-------------CSSEECHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhC-------------CCCcCcHHHCcHh
Confidence 444 57777777776432 1346888888665
No 130
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.83 E-value=5.4e-09 Score=101.27 Aligned_cols=102 Identities=17% Similarity=0.234 Sum_probs=59.9
Q ss_pred CCCcccccCcH-HHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhC----CcEEEEechhhhhhhhcc
Q psy450 203 NVSWEDIGGLS-KLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECR----MNFLAVKGPELLNKYIGQ 277 (478)
Q Consensus 203 ~~~~~~i~g~~-~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~----~~~~~v~~~~l~~~~~g~ 277 (478)
..+|+++.+.. .....+.....+........+.+++|+||||||||++|.++++.+. .++++++++++.......
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~ 199 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNA 199 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCC
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHH
Confidence 46788887643 2222222222222221111257899999999999999999998664 788888888776554322
Q ss_pred h-HHHHHHHHHHhHhCCCeEEEEcCCcccc
Q psy450 278 S-EENIRNVFLKARSAAPCVVFFDELDSLA 306 (478)
Q Consensus 278 ~-~~~~~~~~~~a~~~~p~il~iDeid~l~ 306 (478)
. .......+.... .+.+|+|||++...
T Consensus 200 ~~~~~~~~~~~~~~--~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 200 ISNGSVKEEIDAVK--NVPVLILDDIGAEQ 227 (308)
T ss_dssp CC----CCTTHHHH--TSSEEEEETCCC--
T ss_pred hccchHHHHHHHhc--CCCEEEEcCCCCCC
Confidence 1 111222222222 23599999997654
No 131
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.82 E-value=5.2e-07 Score=88.59 Aligned_cols=186 Identities=15% Similarity=0.205 Sum_probs=111.0
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh-------hhh
Q psy450 202 PNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL-------NKY 274 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~-------~~~ 274 (478)
|....+.++|.++..+.|.+ +.. ..++++||+|+|||++++.+++..+..++++++.... ...
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDF 77 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHH
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHH
Confidence 44456789999988888877 542 3699999999999999999999988778888875420 000
Q ss_pred -------h------------------c--------c------hHHHHHHHHHHhHhC--CCeEEEEcCCccccCCCCCCC
Q psy450 275 -------I------------------G--------Q------SEENIRNVFLKARSA--APCVVFFDELDSLAPRRGQED 313 (478)
Q Consensus 275 -------~------------------g--------~------~~~~~~~~~~~a~~~--~p~il~iDeid~l~~~~~~~~ 313 (478)
. + . ....+..++...... .|.+|+|||++.+....+
T Consensus 78 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~--- 154 (357)
T 2fna_A 78 LLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRG--- 154 (357)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTT---
T ss_pred HHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCc---
Confidence 0 0 0 011233444443332 388999999999874210
Q ss_pred CCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCC---------CCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHH
Q psy450 314 QSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDL---------LDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVV 384 (478)
Q Consensus 314 ~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~---------ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~ 384 (478)
... ...+..+.... .++.+|.|++.... ....+. ||+...+.++. .+.++..++++..+
T Consensus 155 --~~~-~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~~~~~~l~--~r~~~~i~l~~-l~~~e~~~~l~~~~ 222 (357)
T 2fna_A 155 --VNL-LPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVEDPESPLF--GRAFSTVELKP-FSREEAIEFLRRGF 222 (357)
T ss_dssp --CCC-HHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTTCTTSTTT--TCCCEEEEECC-CCHHHHHHHHHHHH
T ss_pred --hhH-HHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhccCCCCccc--cCccceeecCC-CCHHHHHHHHHHHH
Confidence 011 12333333221 25666666664321 111222 36667788874 78888888888776
Q ss_pred hcCCCCCCCCHHHHHHhcCCCCCHHHHHHHH
Q psy450 385 RKFKLSDDVSLDSLVHHFPSQMSGADIYSIC 415 (478)
Q Consensus 385 ~~~~~~~~~~~~~la~~~~~~~sg~di~~l~ 415 (478)
...+...+. ...+...+ +|+.. -+..++
T Consensus 223 ~~~~~~~~~-~~~i~~~t-~G~P~-~l~~~~ 250 (357)
T 2fna_A 223 QEADIDFKD-YEVVYEKI-GGIPG-WLTYFG 250 (357)
T ss_dssp HHHTCCCCC-HHHHHHHH-CSCHH-HHHHHH
T ss_pred HHcCCCCCc-HHHHHHHh-CCCHH-HHHHHH
Confidence 543333332 46777776 66543 344443
No 132
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.80 E-value=3.3e-09 Score=101.66 Aligned_cols=118 Identities=18% Similarity=0.201 Sum_probs=67.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEec--hhhhhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKG--PELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQ 311 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~--~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~ 311 (478)
.+.++|+||||||||++|..++...+.++.+++. .+..+.+....+..+..+.+...... +|+||+++.+......
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~ 200 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGG 200 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-----
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccccccc
Confidence 4457999999999999999999876555334433 33333333444555555666555554 9999999999754322
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccc
Q psy450 312 EDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAI 355 (478)
Q Consensus 312 ~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l 355 (478)
.... +...+.+.+++..+.++....++.+|+++| +...++++
T Consensus 201 ~s~~-G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 201 NTTS-GGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred cccc-chHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 1110 111233344444444333344677888888 44455543
No 133
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.80 E-value=4.3e-08 Score=97.27 Aligned_cols=132 Identities=12% Similarity=0.114 Sum_probs=96.6
Q ss_pred CCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe---------eCHhHHhccccEEEeCCCCHH
Q psy450 45 LDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL---------IRKQIQKLFLKTINVLPLTEP 115 (478)
Q Consensus 45 p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via---------ld~al~rRf~~~i~~~~P~~~ 115 (478)
|+||||||+|.+... ..+.++..++..... . .-......+.+|+ +|+++++||.. +.|+.|+.+
T Consensus 190 ~~vl~IDEi~~l~~~-~~~~L~~~le~~~~~---~--~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i~~~~~~~~ 262 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIE-SFSFLNRALESDMAP---V--LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-VSTTPYSEK 262 (368)
T ss_dssp BCEEEEESGGGSBHH-HHHHHHHHTTCTTCC---E--EEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-EEECCCCHH
T ss_pred CceEEEhhccccChH-HHHHHHHHhhCcCCC---e--eeeecccceeeeeccCCCCcccCCHHHHhhccE-EEecCCCHH
Confidence 899999999998643 455666656531100 0 0001111122222 78999999966 899999999
Q ss_pred HHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHh
Q psy450 116 ERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDL 188 (478)
Q Consensus 116 ~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~ 188 (478)
++.+|++.++... ....+.+.++.++..+.|.++.++..+++.|+..+..+ +...|+.+|+..++..+
T Consensus 263 e~~~il~~~~~~~--~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~---~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 263 DTKQILRIRCEEE--DVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR---KGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp HHHHHHHHHHHHT--TCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT---TCSSBCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHc--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHh
Confidence 9999999999775 33455566699999998789999999999999888644 56789999999998864
No 134
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.79 E-value=3.9e-08 Score=98.49 Aligned_cols=207 Identities=17% Similarity=0.098 Sum_probs=115.2
Q ss_pred ccCcHHHHHHHHHHHHhhhhhCCCC-CceEEEeCCCCChHHHHHHHH-HHHhCCcEEEEech-----hhhhhhhcchH-H
Q psy450 209 IGGLSKLKAEILSTFRGVNRTSGLK-RSGLLLYGPPGTGKTLIAKAV-ATECRMNFLAVKGP-----ELLNKYIGQSE-E 280 (478)
Q Consensus 209 i~g~~~~k~~l~~~~~~~~~~~~~~-~~~iLl~Gp~GtGKT~la~~l-a~~~~~~~~~v~~~-----~l~~~~~g~~~-~ 280 (478)
|.|++.+|..+.-.+...... .+ ..++||.|+||| ||++|+++ ++.+.... +.... .+.....+.+. .
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~~ss~~gLt~s~r~~tG~~ 290 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLRRTELTDLTAVLKEDRGWA 290 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGGGCCHHHHSEEEEESSSEE
T ss_pred cCCCHHHHHHHHHHHcCCccc--cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCCCCCccCceEEEEcCCCcc
Confidence 578888877765444221100 11 337999999999 99999999 66654433 33221 11100000000 0
Q ss_pred HHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcC-------CCCCCCeEEEEEcCCCC----
Q psy450 281 NIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDG-------VHTSQDVFILGATNRVD---- 349 (478)
Q Consensus 281 ~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~-------~~~~~~v~vI~ttn~~~---- 349 (478)
.-...+..|.. .++|+||++.+. ......|+..|+. ..-+.++.||+|+|..+
T Consensus 291 ~~~G~l~LAdg---Gvl~lDEIn~~~-------------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~ 354 (506)
T 3f8t_A 291 LRAGAAVLADG---GILAVDHLEGAP-------------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPS 354 (506)
T ss_dssp EEECHHHHTTT---SEEEEECCTTCC-------------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CC
T ss_pred cCCCeeEEcCC---CeeehHhhhhCC-------------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCC
Confidence 00112223322 499999999986 3456666666652 11234689999999865
Q ss_pred -------CCCccccCCCCCCeEEEeCCCCCHHHHH---------HHH---HHHHh--cCC--CCCCCCHHHHHH------
Q psy450 350 -------LLDPAILRPGRLDKSLYVGLYEDRISQL---------GVL---KAVVR--KFK--LSDDVSLDSLVH------ 400 (478)
Q Consensus 350 -------~ld~~l~~~~Rf~~~i~~~~pp~~~~r~---------~il---~~~~~--~~~--~~~~~~~~~la~------ 400 (478)
.|++++++ |||..+.+.-+|+.+.-. +.+ ..+.+ ... ++++. .+.++.
T Consensus 355 ~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea-~~yI~~~y~~tR 431 (506)
T 3f8t_A 355 DPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEA-RKRLEHWYETRR 431 (506)
T ss_dssp SCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHH-HHHHHHHHHHHH
T ss_pred CCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHH-HHHHHHHHHHHh
Confidence 78899999 998766544334432210 111 12223 111 22111 111110
Q ss_pred -h---------cCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHhc
Q psy450 401 -H---------FPSQMSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVTMDDFLGA 448 (478)
Q Consensus 401 -~---------~~~~~sg~di~~l~~~a~~~a~~r~~~~~~~~~~~~~~it~~d~~~A 448 (478)
. ..-+.|.+.+..+++-|...|.-+. ...|+.+|+..|
T Consensus 432 ~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~g----------R~~V~~eDV~~A 479 (506)
T 3f8t_A 432 EEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRL----------SDDVEPEDVDIA 479 (506)
T ss_dssp HHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTT----------CSEECHHHHHHH
T ss_pred cCcccccccccccccccHHHHHHHHHHHHHHHHHcC----------cCCCCHHHHHHH
Confidence 0 2346788888899888876666554 567999999999
No 135
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.76 E-value=4.6e-07 Score=88.76 Aligned_cols=190 Identities=18% Similarity=0.226 Sum_probs=107.6
Q ss_pred CCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh----------
Q psy450 202 PNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL---------- 271 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~---------- 271 (478)
|...-+.++|.++..+.|.+.+.. ...++++||+|+|||++++.+++..+ ++++++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~--------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 76 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN--------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREE 76 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH--------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHH
T ss_pred CCCChHhcCChHHHHHHHHHHHhc--------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHH
Confidence 444567899999999998887653 14699999999999999999999875 6777764431
Q ss_pred --h---hhhcc---------------------hHHHHHHHHH----HhHhCCCeEEEEcCCccccCCCCCCCCCchhHHH
Q psy450 272 --N---KYIGQ---------------------SEENIRNVFL----KARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDR 321 (478)
Q Consensus 272 --~---~~~g~---------------------~~~~~~~~~~----~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 321 (478)
. ...+. ....+..++. .+....|.+|+|||++.+..... ... ..
T Consensus 77 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~---~~~---~~ 150 (350)
T 2qen_A 77 LIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS---RGG---KE 150 (350)
T ss_dssp HHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT---TTT---HH
T ss_pred HHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc---cch---hh
Confidence 0 00000 0011222222 22222489999999999874100 001 12
Q ss_pred HHHHHHHhhcCCCCCCCeEEEEEcCCCC---------CCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCC
Q psy450 322 VVSQLLAEMDGVHTSQDVFILGATNRVD---------LLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDD 392 (478)
Q Consensus 322 ~~~~ll~~l~~~~~~~~v~vI~ttn~~~---------~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~ 392 (478)
....+...++.. .++.+|.|++... .....+. ||+...+.++ |.+.++-.++++..+...+...+
T Consensus 151 ~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~-pl~~~e~~~~l~~~~~~~~~~~~ 224 (350)
T 2qen_A 151 LLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVK-PFDKDTSVEFLKRGFREVNLDVP 224 (350)
T ss_dssp HHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECC-CCCHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCC-CCCHHHHHHHHHHHHHHcCCCCC
Confidence 233332223321 3566666654421 1112222 3666677776 47888888888877654443222
Q ss_pred -CCHHHHHHhcCCCCCHHHHHHHH
Q psy450 393 -VSLDSLVHHFPSQMSGADIYSIC 415 (478)
Q Consensus 393 -~~~~~la~~~~~~~sg~di~~l~ 415 (478)
.....+...+ +|+.. -+..++
T Consensus 225 ~~~~~~i~~~t-gG~P~-~l~~~~ 246 (350)
T 2qen_A 225 ENEIEEAVELL-DGIPG-WLVVFG 246 (350)
T ss_dssp HHHHHHHHHHH-TTCHH-HHHHHH
T ss_pred HHHHHHHHHHh-CCCHH-HHHHHH
Confidence 2355566665 56443 344333
No 136
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.68 E-value=2e-08 Score=90.54 Aligned_cols=124 Identities=19% Similarity=0.175 Sum_probs=77.5
Q ss_pred CceEEEeCCCCChHHHHHHHHHHH--------hC-CcEEEEechhhhhhhh----------cc-----hHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATE--------CR-MNFLAVKGPELLNKYI----------GQ-----SEENIRNVFLKA 289 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~--------~~-~~~~~v~~~~l~~~~~----------g~-----~~~~~~~~~~~a 289 (478)
+...|++|+||+|||+.|...+.. .| .+++..+..++..... .. ....+...+..
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~- 83 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK- 83 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-
Confidence 345789999999999999886543 34 6666666665532211 11 11222222211
Q ss_pred HhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCC
Q psy450 290 RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGL 369 (478)
Q Consensus 290 ~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~ 369 (478)
.....+||+|||++.+.+.+.... +. ..++..+... ....+-+|.+|+.+..++..+++ |++..+++..
T Consensus 84 ~~~~~~vliIDEAq~l~~~~~~~~---e~-----~rll~~l~~~-r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~ 152 (199)
T 2r2a_A 84 PENIGSIVIVDEAQDVWPARSAGS---KI-----PENVQWLNTH-RHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIAS 152 (199)
T ss_dssp GGGTTCEEEETTGGGTSBCCCTTC---CC-----CHHHHGGGGT-TTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEE
T ss_pred cccCceEEEEEChhhhccCccccc---hh-----HHHHHHHHhc-CcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcC
Confidence 233467999999999976542111 11 1244455432 23456678888889999999998 9999998875
No 137
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.65 E-value=7.9e-08 Score=100.38 Aligned_cols=162 Identities=14% Similarity=0.098 Sum_probs=93.7
Q ss_pred hhccCccchhhhhHHHHhhhhcCCCeEEEecccccccch---hhHhhhccccccccccccchhhhc-cCCCcEEEEe---
Q psy450 22 NYFATPRYHHLNDIVKINLKKYNLDIFKYDEVNYLCNVK---YVYFKLCSFDSVNVKSNETKDQQC-KQQHKKKLVL--- 94 (478)
Q Consensus 22 ~~~~~~~~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r---~~~~~l~~~d~~~~~~~~~~~~~~-~~~~~v~via--- 94 (478)
.|.+.... .+...|. .+...+| |+||||+|.+...+ ..+.+|..||......-.....+. -....+++|+
T Consensus 156 ~~ig~~~~-~~~~~~~-~a~~~~~-vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN 232 (543)
T 3m6a_A 156 TYVGAMPG-RIIQGMK-KAGKLNP-VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATAN 232 (543)
T ss_dssp ---------CHHHHHH-TTCSSSE-EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECS
T ss_pred HHhccCch-HHHHHHH-HhhccCC-EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccC
Confidence 44444444 6677887 7776777 99999999999875 457778888753221100000000 0114566666
Q ss_pred ----eCHhHHhccccEEEeCCCCHHHHHHHHHHHHhh-----cCC---CCCCChhHHHHHHHhcCC-CCHHHH----HHH
Q psy450 95 ----IRKQIQKLFLKTINVLPLTEPERRLLIQYQLDC-----LGG---DYGFDASLVEYLSSVTSG-FERHDL----TCL 157 (478)
Q Consensus 95 ----ld~al~rRf~~~i~~~~P~~~~r~~il~~~~~~-----~~~---~~~~~~~~i~~la~~t~G-~s~~di----~~l 157 (478)
+||++++||+ .|+|+.|+.+++.+|++.++.. .+. .+..+.+.+..++....+ ....++ ..+
T Consensus 233 ~~~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~ 311 (543)
T 3m6a_A 233 NLATIPGPLRDRME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAI 311 (543)
T ss_dssp STTTSCHHHHHHEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHH
T ss_pred ccccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHH
Confidence 9999999995 7999999999999999998722 111 122334455776664443 344444 445
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHh
Q psy450 158 VRLSVKNKMLKQGINKRDLQKEDFQQIYDDL 188 (478)
Q Consensus 158 ~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~ 188 (478)
|+.++..... .......|+.+++..++...
T Consensus 312 ~~~aa~~~~~-~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 312 CRKAAKAIVA-EERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp HHHHHHHHHT-TCCSCCEECTTTTHHHHCSC
T ss_pred HHHHHHHHHh-cCCcceecCHHHHHHHhCCc
Confidence 5554444432 22345679999998887643
No 138
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.54 E-value=7.5e-07 Score=90.54 Aligned_cols=127 Identities=13% Similarity=0.225 Sum_probs=94.7
Q ss_pred CCCeEEEecccccccch-hhHhhhccccccccccccchhhhccCCCcEEEEe----------eCHhHHhccc--cEEEeC
Q psy450 44 NLDIFKYDEVNYLCNVK-YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL----------IRKQIQKLFL--KTINVL 110 (478)
Q Consensus 44 ~p~ilfiDe~d~i~~~r-~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via----------ld~al~rRf~--~~i~~~ 110 (478)
+|+||||||++.+.+.+ ....++..++.+ ...+..+|++ +++++++||. ..+.++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l------------~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~ 261 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNEL------------HDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLE 261 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHH------------HTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHH------------HHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeC
Confidence 79999999999998763 344455555532 1233445555 6799999997 789999
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhh
Q psy450 111 PLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQ 189 (478)
Q Consensus 111 ~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~ 189 (478)
.|+.++|.+|++..+...+..+ +.+.++.++..+.| +..++..+++.+...+... +..|+.+++..++....
T Consensus 262 ~p~~e~r~~iL~~~~~~~~~~i--~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~----~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 262 PPDEETRKSIARKMLEIEHGEL--PEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT----GKEVDLKEAILLLKDFI 333 (440)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHS----SSCCCHHHHHHHTSTTT
T ss_pred CCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh----CCCCCHHHHHHHHHHHh
Confidence 9999999999999997653333 34445899988875 7889999988888776532 34699999988887654
No 139
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.51 E-value=3.1e-07 Score=88.61 Aligned_cols=154 Identities=8% Similarity=0.118 Sum_probs=99.8
Q ss_pred hhhhhHHHHhh-----hhcCCCeEEEecccccccch-----------hhHhhhccccccccccccchhhhccCCCcEEEE
Q psy450 30 HHLNDIVKINL-----KKYNLDIFKYDEVNYLCNVK-----------YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLV 93 (478)
Q Consensus 30 ~~~~~if~~~a-----~~~~p~ilfiDe~d~i~~~r-----------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~vi 93 (478)
..++.+|. .+ +...++||||||+|.+...+ +.+.++..++...... ..+......+++|
T Consensus 98 ~~~~~~~~-~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~----~~~~~~~~~~~~i 172 (310)
T 1ofh_A 98 SIIRDLTD-SAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST----KHGMVKTDHILFI 172 (310)
T ss_dssp HHHHHHHH-TTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEE----TTEEEECTTCEEE
T ss_pred HHHHHHHH-HhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEec----ccccccCCcEEEE
Confidence 34666664 32 12348999999999998764 2566777777421100 0011123445555
Q ss_pred e-----------eCHhHHhccccEEEeCCCCHHHHHHHHHH----HH-------hhcCCCCCCChhHHHHHHHhc-----
Q psy450 94 L-----------IRKQIQKLFLKTINVLPLTEPERRLLIQY----QL-------DCLGGDYGFDASLVEYLSSVT----- 146 (478)
Q Consensus 94 a-----------ld~al~rRf~~~i~~~~P~~~~r~~il~~----~~-------~~~~~~~~~~~~~i~~la~~t----- 146 (478)
+ ++|++.+||+..|+|+.|+.+++.+|++. +. ...+..+..+.+.++.++..+
T Consensus 173 ~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 252 (310)
T 1ofh_A 173 ASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNE 252 (310)
T ss_dssp EEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHH
T ss_pred EcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcc
Confidence 4 79999999999999999999999999983 22 112112234555568888776
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHhhcC---CCCCCCHHHHHHHHHHh
Q psy450 147 --SGFERHDLTCLVRLSVKNKMLKQGI---NKRDLQKEDFQQIYDDL 188 (478)
Q Consensus 147 --~G~s~~di~~l~~~a~~~a~~~~~~---~~~~it~~d~~~a~~~~ 188 (478)
++.+...+..+++.+...+..+... ....|+.+++..++...
T Consensus 253 ~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 253 KTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred cccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 3577889999999887665433211 12358999998887754
No 140
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.43 E-value=7.4e-07 Score=103.72 Aligned_cols=112 Identities=21% Similarity=0.336 Sum_probs=77.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhh----hhhhhc------------chHHHHHHHHHHhHhCCC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPEL----LNKYIG------------QSEENIRNVFLKARSAAP 294 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l----~~~~~g------------~~~~~~~~~~~~a~~~~p 294 (478)
+.+++|+||||||||++|.+++.+. |....+++..+. .....| ..+..++.+...++..+|
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~ 1506 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 1506 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcCCC
Confidence 6789999999999999999997765 556777775432 122222 345666677777788899
Q ss_pred eEEEEcCCccccCCC---CCCCC-CchhHHHHHHHHHHhhcCCCCCCCeEEEEEc
Q psy450 295 CVVFFDELDSLAPRR---GQEDQ-SSGVMDRVVSQLLAEMDGVHTSQDVFILGAT 345 (478)
Q Consensus 295 ~il~iDeid~l~~~~---~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~v~vI~tt 345 (478)
++|+||+++.+.+.. +..++ ..+...+++.+++..+.+.....+++||.|-
T Consensus 1507 ~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1507 DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp SEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 999999999888742 11121 2222356777777777776666777776543
No 141
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.35 E-value=2.4e-06 Score=78.81 Aligned_cols=126 Identities=13% Similarity=0.159 Sum_probs=91.2
Q ss_pred cCCCeEEEecccccccch-hhHhhhccccccccccccchhhhccCCCc-EEEEe---------eCHhHHhccc--cEEEe
Q psy450 43 YNLDIFKYDEVNYLCNVK-YVYFKLCSFDSVNVKSNETKDQQCKQQHK-KKLVL---------IRKQIQKLFL--KTINV 109 (478)
Q Consensus 43 ~~p~ilfiDe~d~i~~~r-~~~~~l~~~d~~~~~~~~~~~~~~~~~~~-v~via---------ld~al~rRf~--~~i~~ 109 (478)
.+|.||||||++.+.... ....++..++... ..... +++.+ +++++.+||. ..+++
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~-----------~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l 171 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVA-----------EQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQL 171 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHH-----------HHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEEC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHH-----------HcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEe
Confidence 358999999999987654 2344444444321 11222 44444 4688999996 89999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q psy450 110 LPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYD 186 (478)
Q Consensus 110 ~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~ 186 (478)
+.|+.+++.++++.++...+ ...+.+.++.++..+.| +...+..+++.+...+..+ ...|+.+++..++.
T Consensus 172 ~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~----~~~It~~~v~~~l~ 241 (242)
T 3bos_A 172 QPMMDDEKLAALQRRAAMRG--LQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVH----QRKLTIPFVKEMLR 241 (242)
T ss_dssp CCCCGGGHHHHHHHHHHHTT--CCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHH----TCCCCHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHh----CCCCcHHHHHHHhh
Confidence 99999999999999997663 34556666899998865 7788888888888776432 35699999988764
No 142
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.34 E-value=8.4e-07 Score=102.15 Aligned_cols=113 Identities=20% Similarity=0.283 Sum_probs=73.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHH---hCCcEEEEechh-----hhh-----------hhhcchHHHHHHHHHHhHhCCC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATE---CRMNFLAVKGPE-----LLN-----------KYIGQSEENIRNVFLKARSAAP 294 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~---~~~~~~~v~~~~-----l~~-----------~~~g~~~~~~~~~~~~a~~~~p 294 (478)
.+.+.++||+|||||++|-.++.+ .|....+++..+ +.. .++...+..+..+...++..+|
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~ 1510 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 1510 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCC
Confidence 445999999999999998777543 366677776532 111 1344457777777788889999
Q ss_pred eEEEEcCCccccCCCCCC----CCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcC
Q psy450 295 CVVFFDELDSLAPRRGQE----DQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATN 346 (478)
Q Consensus 295 ~il~iDeid~l~~~~~~~----~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn 346 (478)
++|++|.+..|.++.... +.+-+...+.+++-+..+.+.-...++.+|++..
T Consensus 1511 ~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~ 1566 (1706)
T 3cmw_A 1511 DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1566 (1706)
T ss_dssp SEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCcEEEEeec
Confidence 999999999999875322 2223333455555555555444445556665543
No 143
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.34 E-value=4.9e-06 Score=81.35 Aligned_cols=139 Identities=11% Similarity=0.046 Sum_probs=94.4
Q ss_pred cCCCeEEEecccccccchhhHhhhccccccccccccchh---hhc-cCCCcEEEEe-------eCHhHHhccccEEEeCC
Q psy450 43 YNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKD---QQC-KQQHKKKLVL-------IRKQIQKLFLKTINVLP 111 (478)
Q Consensus 43 ~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~---~~~-~~~~~v~via-------ld~al~rRf~~~i~~~~ 111 (478)
..+++|||||+|.+... ..+.++..++........... ... ....++.+|+ +++++++||+..+.++.
T Consensus 105 ~~~~vl~lDEi~~l~~~-~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~ 183 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSPA-IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEF 183 (338)
T ss_dssp CTTCEEEEETGGGCCHH-HHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCC
T ss_pred cCCCEEEEechhhcCHH-HHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCC
Confidence 46899999999998643 345566656532110000000 000 0111366666 89999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHh
Q psy450 112 LTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDL 188 (478)
Q Consensus 112 P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~ 188 (478)
|+.+++.++++.++... ....+.+.++.++..+.| +...+.++++.+...+... ....++.+++..++...
T Consensus 184 ~~~~e~~~il~~~~~~~--~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~---~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 184 YKDSELALILQKAALKL--NKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDFADVN---DEEIITEKRANEALNSL 254 (338)
T ss_dssp CCHHHHHHHHHHHHHHT--TCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHHHHHT---TCSEECHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHhh---cCCccCHHHHHHHHHHh
Confidence 99999999999999876 334455556888886655 5577888888776655432 45678999998888764
No 144
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.30 E-value=1e-06 Score=87.18 Aligned_cols=114 Identities=21% Similarity=0.274 Sum_probs=72.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccC-CCCCC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAP-RRGQE 312 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~-~~~~~ 312 (478)
+..++|+||||+||||++++++...+..++.+..+.-. ....+. ......++++||++.+.. .+...
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~------~~~~lg------~~~q~~~~l~dd~~~~~~~~r~l~ 236 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR------LNFELG------VAIDQFLVVFEDVKGTGGESRDLP 236 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT------HHHHHG------GGTTCSCEEETTCCCSTTTTTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh------HHHHHH------HhcchhHHHHHHHHHHHHHHhhcc
Confidence 56799999999999999999999887776554332110 000111 112335789999998875 22111
Q ss_pred CCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCCCeEEEeC
Q psy450 313 DQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVG 368 (478)
Q Consensus 313 ~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~ 368 (478)
.. .+. .....+...+++ .+.|+.++|+++.+ +++.+|||++..++..
T Consensus 237 ~~-~~~--~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l 283 (377)
T 1svm_A 237 SG-QGI--NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSV 283 (377)
T ss_dssp CC-SHH--HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCC
T ss_pred cc-Ccc--hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhh
Confidence 11 110 012334444554 24578889999999 7899999988776663
No 145
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.28 E-value=4.1e-06 Score=80.81 Aligned_cols=100 Identities=13% Similarity=0.078 Sum_probs=73.1
Q ss_pred HHHHHHHHhhccC-----ccchhhhhHHHHhh--hhcCCCeEEEecccccccchhhHhhhccccccccccccchhhhccC
Q psy450 14 DILSHLLTNYFAT-----PRYHHLNDIVKINL--KKYNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQ 86 (478)
Q Consensus 14 ~~l~~~~~~~~~~-----~~~~~~~~if~~~a--~~~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~ 86 (478)
+++..++....++ .....++.+|+ .. ....++|+|+||+|.+...++++.++.... ..
T Consensus 96 ~~~~~I~~~L~g~~~~~~~~~~~L~~~f~-~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~--------------~~ 160 (318)
T 3te6_A 96 ALYEKIWFAISKENLCGDISLEALNFYIT-NVPKAKKRKTLILIQNPENLLSEKILQYFEKWIS--------------SK 160 (318)
T ss_dssp HHHHHHHHHHSCCC--CCCCHHHHHHHHH-HSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHH--------------CS
T ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHH-HhhhccCCceEEEEecHHHhhcchHHHHHHhccc--------------cc
Confidence 3455555555443 23457888897 64 456789999999999997777777765432 23
Q ss_pred CCcEEEEe-----------eCHhHHhccc-cEEEeCCCCHHHHHHHHHHHHhhc
Q psy450 87 QHKKKLVL-----------IRKQIQKLFL-KTINVLPLTEPERRLLIQYQLDCL 128 (478)
Q Consensus 87 ~~~v~via-----------ld~al~rRf~-~~i~~~~P~~~~r~~il~~~~~~~ 128 (478)
..++.||+ +++++++||. ..|.|+.++.++..+|++..+...
T Consensus 161 ~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 161 NSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp SCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 44566665 5667788997 689999999999999999999765
No 146
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.25 E-value=7e-07 Score=79.81 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=26.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFL 263 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~ 263 (478)
.++++++||||||||++|.++++.++..++
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 457999999999999999999999865543
No 147
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.25 E-value=7.8e-06 Score=81.08 Aligned_cols=141 Identities=14% Similarity=0.209 Sum_probs=94.7
Q ss_pred hhhHHHHhhhh-cCCCeEEEecccccccc----hhhHhhhccccccccccccchhhhccCCCcEEEEe----------eC
Q psy450 32 LNDIVKINLKK-YNLDIFKYDEVNYLCNV----KYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL----------IR 96 (478)
Q Consensus 32 ~~~if~~~a~~-~~p~ilfiDe~d~i~~~----r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via----------ld 96 (478)
+..++. ..+. ..|+||||||+|.+... ..+..++..++.. ....++.+|+ ++
T Consensus 118 ~~~l~~-~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~------------~~~~~~~~I~~t~~~~~~~~l~ 184 (387)
T 2v1u_A 118 YERLVK-RLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQEL------------GDRVWVSLVGITNSLGFVENLE 184 (387)
T ss_dssp HHHHHH-HHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----------------CEEEEECSCSTTSSSSC
T ss_pred HHHHHH-HHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhc------------CCCceEEEEEEECCCchHhhhC
Confidence 455554 3333 35899999999999865 3455555544421 0023445554 78
Q ss_pred HhHHhcccc-EEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHhhcCC
Q psy450 97 KQIQKLFLK-TINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTS---GFERHDLTCLVRLSVKNKMLKQGIN 172 (478)
Q Consensus 97 ~al~rRf~~-~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~---G~s~~di~~l~~~a~~~a~~~~~~~ 172 (478)
+++.+||.. .+.|+.|+.+++.+|++.++.........+.+.++.++..+. | ....+..+++.++..+..+ +
T Consensus 185 ~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~---~ 260 (387)
T 2v1u_A 185 PRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHG-DARRALDLLRVAGEIAERR---R 260 (387)
T ss_dssp HHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHT---T
T ss_pred HHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHc---C
Confidence 899999975 899999999999999999986411122233344578888776 5 4566777888887665432 4
Q ss_pred CCCCCHHHHHHHHHHhh
Q psy450 173 KRDLQKEDFQQIYDDLQ 189 (478)
Q Consensus 173 ~~~it~~d~~~a~~~~~ 189 (478)
...++.+++..++....
T Consensus 261 ~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 261 EERVRREHVYSARAEIE 277 (387)
T ss_dssp CSCBCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHh
Confidence 57799999999988764
No 148
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.20 E-value=1.9e-06 Score=85.26 Aligned_cols=145 Identities=10% Similarity=0.080 Sum_probs=95.2
Q ss_pred hccCccchhhhhHHHHhh----hhcCCCeEEEecccccccch-------------hhHhhhcccccccccc---c--cc-
Q psy450 23 YFATPRYHHLNDIVKINL----KKYNLDIFKYDEVNYLCNVK-------------YVYFKLCSFDSVNVKS---N--ET- 79 (478)
Q Consensus 23 ~~~~~~~~~~~~if~~~a----~~~~p~ilfiDe~d~i~~~r-------------~~~~~l~~~d~~~~~~---~--~~- 79 (478)
|++......++.+|+ .+ ....|+||||||+|.+...+ +.+.||..||+....- . ..
T Consensus 92 ~~g~~~~~~~~~~~~-~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~ 170 (363)
T 3hws_A 92 YVGEDVENIIQKLLQ-KCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHP 170 (363)
T ss_dssp HHHHHHTHHHHHHHH-HTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC-------------
T ss_pred cccccHHHHHHHHHH-HhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccC
Confidence 555554556777776 55 45679999999999998873 7888999998421100 0 00
Q ss_pred --hhhhccCCCcEEEEe---------------------------------------------------eCHhHHhccccE
Q psy450 80 --KDQQCKQQHKKKLVL---------------------------------------------------IRKQIQKLFLKT 106 (478)
Q Consensus 80 --~~~~~~~~~~v~via---------------------------------------------------ld~al~rRf~~~ 106 (478)
+..-....+.++|.+ ++|++..||+..
T Consensus 171 ~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~ 250 (363)
T 3hws_A 171 QQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVV 250 (363)
T ss_dssp ---CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEE
T ss_pred CCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCee
Confidence 000111222222222 268889999999
Q ss_pred EEeCCCCHHHHHHHHHH----HHhh-------cCCCCCCChhHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHh
Q psy450 107 INVLPLTEPERRLLIQY----QLDC-------LGGDYGFDASLVEYLSS--VTSGFERHDLTCLVRLSVKNKMLK 168 (478)
Q Consensus 107 i~~~~P~~~~r~~il~~----~~~~-------~~~~~~~~~~~i~~la~--~t~G~s~~di~~l~~~a~~~a~~~ 168 (478)
+.|+.|+.+++.+|+.. ++.. .+..+..+.+.++.|++ ....+.+..+++++..++..++.+
T Consensus 251 ~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 251 ATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp EECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 99999999999999986 3322 12223345566688885 445677889999999999888765
No 149
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.18 E-value=1.9e-05 Score=76.91 Aligned_cols=139 Identities=15% Similarity=0.130 Sum_probs=92.2
Q ss_pred CCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe------------eCHhHHhccccEEEeCCC
Q psy450 45 LDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL------------IRKQIQKLFLKTINVLPL 112 (478)
Q Consensus 45 p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via------------ld~al~rRf~~~i~~~~P 112 (478)
.+|+||||++.+.+ ...+.++..|+..... ...........++||+ +++++++||+..+.++.|
T Consensus 110 ~~vl~iDEi~~~~~-~~~~~Ll~~l~~~~~~---~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p 185 (331)
T 2r44_A 110 SNFILADEVNRSPA-KVQSALLECMQEKQVT---IGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYL 185 (331)
T ss_dssp SSEEEEETGGGSCH-HHHHHHHHHHHHSEEE---ETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCC
T ss_pred ccEEEEEccccCCH-HHHHHHHHHHhcCcee---eCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCC
Confidence 38999999998754 3456666666532110 0000112233456665 689999999989999999
Q ss_pred CHHHHHHHHHHHHhhcCC--------------------CCCCChhHHHHHHHhc-------------------CCCCHHH
Q psy450 113 TEPERRLLIQYQLDCLGG--------------------DYGFDASLVEYLSSVT-------------------SGFERHD 153 (478)
Q Consensus 113 ~~~~r~~il~~~~~~~~~--------------------~~~~~~~~i~~la~~t-------------------~G~s~~d 153 (478)
+.++|.+||+.+...... ....+.+.++.++... .|.|...
T Consensus 186 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~ 265 (331)
T 2r44_A 186 DKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRA 265 (331)
T ss_dssp CHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHH
T ss_pred CHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhH
Confidence 999999999998754210 1122334445555432 2568888
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhh
Q psy450 154 LTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQS 190 (478)
Q Consensus 154 i~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~ 190 (478)
...+++.|...+..+ +...++.+|+..++..+..
T Consensus 266 ~~~ll~~a~a~A~l~---g~~~v~~~dv~~~~~~vl~ 299 (331)
T 2r44_A 266 AINLNRVAKAMAFFN---NRDYVLPEDIKEVAYDILN 299 (331)
T ss_dssp HHHHHHHHHHHHHHT---TCSBCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc---CCCCCCHHHHHHHHHHHhH
Confidence 888888877766543 4566999999999887653
No 150
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.18 E-value=1.4e-05 Score=73.25 Aligned_cols=118 Identities=14% Similarity=0.181 Sum_probs=85.4
Q ss_pred cCCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe------eCHhHHhccccEEEeCCCCHHH
Q psy450 43 YNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL------IRKQIQKLFLKTINVLPLTEPE 116 (478)
Q Consensus 43 ~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via------ld~al~rRf~~~i~~~~P~~~~ 116 (478)
..|.+|||||+|.+.. ...+.++..++.. ....++|+. +++++.+|+ ..++++.|+.++
T Consensus 125 ~~~~vlviDe~~~l~~-~~~~~l~~~l~~~-------------~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e 189 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSR-HSFNALLKTLEEP-------------PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQ 189 (250)
T ss_dssp SSSEEEEEETGGGSCH-HHHHHHHHHHHSC-------------CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHH
T ss_pred CCceEEEEECcccccH-HHHHHHHHHHhcC-------------CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHH
Confidence 4589999999999743 3455666666531 122233333 889999997 789999999999
Q ss_pred HHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q psy450 117 RRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIY 185 (478)
Q Consensus 117 r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~ 185 (478)
..++++.++...+ ...+.+.++.+++.+.| +...+..+++.++.. ....|+.+++..++
T Consensus 190 ~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~G-~~~~~~~~~~~~~~~-------~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 190 IRHQLEHILNEEH--IAHEPRALQLLARAAEG-SLRDALSLTDQAIAS-------GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHHHHTT--CCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHTT-------TTSSBCHHHHHHHS
T ss_pred HHHHHHHHHHhcC--CCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc-------cCceecHHHHHHHh
Confidence 9999999997653 33455556899999987 778888888877533 22479999987764
No 151
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.17 E-value=8e-06 Score=83.64 Aligned_cols=136 Identities=11% Similarity=0.092 Sum_probs=89.9
Q ss_pred chhhhhHHHHhhhhcCCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe------------eC
Q psy450 29 YHHLNDIVKINLKKYNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL------------IR 96 (478)
Q Consensus 29 ~~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via------------ld 96 (478)
...++.+|+ .++...|+||||| +.....+.++..|+ .+.+.||+ +|
T Consensus 253 e~~~~~~~~-~~~~~~~~iLfiD-----~~~~a~~~L~~~L~----------------~g~v~vI~at~~~e~~~~~~~~ 310 (468)
T 3pxg_A 253 EDRLKKVMD-EIRQAGNIILFID-----AAIDASNILKPSLA----------------RGELQCIGATTLDEYRKYIEKD 310 (468)
T ss_dssp CTTHHHHHH-HHHTCCCCEEEEC-----C--------CCCTT----------------SSSCEEEEECCTTTTHHHHTTC
T ss_pred HHHHHHHHH-HHHhcCCeEEEEe-----CchhHHHHHHHhhc----------------CCCEEEEecCCHHHHHHHhhcC
Confidence 347889999 8998899999999 22223333443333 34577777 68
Q ss_pred HhHHhccccEEEeCCCCHHHHHHHHHHHHhhcC--CCCCCChhHHHHHHHhcCCCC-----HHHHHHHHHHHHHHHHHhh
Q psy450 97 KQIQKLFLKTINVLPLTEPERRLLIQYQLDCLG--GDYGFDASLVEYLSSVTSGFE-----RHDLTCLVRLSVKNKMLKQ 169 (478)
Q Consensus 97 ~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~--~~~~~~~~~i~~la~~t~G~s-----~~di~~l~~~a~~~a~~~~ 169 (478)
+++.|||. .|.|+.|+.+++.+||+.+...+. .....+.+.+..++..+.+|. +.....++++|+..+..+.
T Consensus 311 ~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~ 389 (468)
T 3pxg_A 311 AALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRS 389 (468)
T ss_dssp SHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhcc
Confidence 99999997 599999999999999999886632 123445555577777765554 4477788888887665432
Q ss_pred cCCCCCCCHHHHHHHHHHhh
Q psy450 170 GINKRDLQKEDFQQIYDDLQ 189 (478)
Q Consensus 170 ~~~~~~it~~d~~~a~~~~~ 189 (478)
...+-...++...+..+.
T Consensus 390 --~~~p~~i~~l~~~i~~l~ 407 (468)
T 3pxg_A 390 --FTTPPNLKELEQKLDEVR 407 (468)
T ss_dssp --TSCCSSTHHHHHHHHHHH
T ss_pred --CCCchHHHHHHHHHHHHH
Confidence 223444455655555554
No 152
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.16 E-value=8.1e-06 Score=98.81 Aligned_cols=138 Identities=20% Similarity=0.243 Sum_probs=87.5
Q ss_pred CceEEEeCCCCChHHHHHHHHHHH-hCCcEEEEechhhhhhhhcchHHHHHHHHHHh----H------------hCCCeE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATE-CRMNFLAVKGPELLNKYIGQSEENIRNVFLKA----R------------SAAPCV 296 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~-~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a----~------------~~~p~i 296 (478)
.+++||+||||||||.++...... .+.+++.++++... +...+...++.. + .+...|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 456999999999999877654443 36667778876532 223333333321 0 122369
Q ss_pred EEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCC-------CCCCeEEEEEcCCCC-----CCCccccCCCCCCeE
Q psy450 297 VFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVH-------TSQDVFILGATNRVD-----LLDPAILRPGRLDKS 364 (478)
Q Consensus 297 l~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~v~vI~ttn~~~-----~ld~~l~~~~Rf~~~ 364 (478)
+||||++.-.....+ +...-+++.+++..-.-+. .-.++.+|+|.|.|. .++++++| ||. .
T Consensus 1378 lFiDDiNmp~~D~yG----tQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~-v 1450 (3245)
T 3vkg_A 1378 VFCDEINLPSTDKYG----TQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP-I 1450 (3245)
T ss_dssp EEETTTTCCCCCTTS----CCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC-E
T ss_pred EEecccCCCCccccc----cccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce-E
Confidence 999999875543221 1122345555554311111 123588999999884 58999998 885 5
Q ss_pred EEeCCCCCHHHHHHHHHHHHh
Q psy450 365 LYVGLYEDRISQLGVLKAVVR 385 (478)
Q Consensus 365 i~~~~pp~~~~r~~il~~~~~ 385 (478)
++++. |+.+....|+..++.
T Consensus 1451 i~i~~-ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1451 LLVDF-PSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp EECCC-CCHHHHHHHHHHHHH
T ss_pred EEeCC-CCHHHHHHHHHHHHH
Confidence 88987 689999999876654
No 153
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.16 E-value=1.2e-05 Score=71.01 Aligned_cols=28 Identities=25% Similarity=0.510 Sum_probs=23.9
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEE
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFL 263 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~ 263 (478)
.+.|.||+|+||||+++.++..++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4789999999999999999998865443
No 154
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.15 E-value=1.7e-05 Score=71.77 Aligned_cols=119 Identities=13% Similarity=0.052 Sum_probs=81.3
Q ss_pred cCCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe-----eCHhHHhccccEEEeCCCCHHHH
Q psy450 43 YNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL-----IRKQIQKLFLKTINVLPLTEPER 117 (478)
Q Consensus 43 ~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via-----ld~al~rRf~~~i~~~~P~~~~r 117 (478)
..++||||||+|.+.... .+.++..++.. ..+..+++++ +++++.+||. .++++.|+.+++
T Consensus 101 ~~~~vliiDe~~~l~~~~-~~~l~~~l~~~------------~~~~~~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~ 166 (226)
T 2chg_A 101 APFKIIFLDEADALTADA-QAALRRTMEMY------------SKSCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAM 166 (226)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHT------------TTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHH
T ss_pred cCceEEEEeChhhcCHHH-HHHHHHHHHhc------------CCCCeEEEEeCChhhcCHHHHHhCc-eeecCCCCHHHH
Confidence 568999999999987543 34455555521 1122233333 8999999997 899999999999
Q ss_pred HHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q psy450 118 RLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYD 186 (478)
Q Consensus 118 ~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~ 186 (478)
.++++.++...+ ...+.+.++.++..+.| +...+.++++.++.. ...|+.+|+..++.
T Consensus 167 ~~~l~~~~~~~~--~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~--------~~~I~~~~v~~~~~ 224 (226)
T 2chg_A 167 KKRLLEICEKEG--VKITEDGLEALIYISGG-DFRKAINALQGAAAI--------GEVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHHT--CCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHT--------CSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc--------CceecHHHHHHHhc
Confidence 999999987653 23445555888887765 444455555444332 15799999988765
No 155
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.11 E-value=1.3e-05 Score=77.62 Aligned_cols=137 Identities=13% Similarity=0.019 Sum_probs=91.3
Q ss_pred cCCCeEEEecccccccchhhHhhhccccccccccccchhhhc------cCCCcEEEEe-------eCHhHHhccccEEEe
Q psy450 43 YNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQC------KQQHKKKLVL-------IRKQIQKLFLKTINV 109 (478)
Q Consensus 43 ~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~------~~~~~v~via-------ld~al~rRf~~~i~~ 109 (478)
..+++|||||+|.+.... ...++..++...... ....+. ....++.+|+ +++++++||+..+.+
T Consensus 89 ~~~~~l~lDEi~~l~~~~-~~~L~~~l~~~~~~~--v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l 165 (324)
T 1hqc_A 89 EEGDILFIDEIHRLSRQA-EEHLYPAMEDFVMDI--VIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHL 165 (324)
T ss_dssp CTTCEEEETTTTSCCHHH-HHHHHHHHHHSEEEE--CCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEEC
T ss_pred cCCCEEEEECCcccccch-HHHHHHHHHhhhhHH--hccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEec
Confidence 568999999999987543 334444444311000 000000 0112355555 889999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHh
Q psy450 110 LPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDL 188 (478)
Q Consensus 110 ~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~ 188 (478)
+.|+.+++.++++.++...+ ...+.+.++.++..+.|. ...+.++++.+...+.. .....++.+++..++...
T Consensus 166 ~~~~~~e~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~G~-~r~l~~~l~~~~~~a~~---~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 166 EYYTPEELAQGVMRDARLLG--VRITEEAALEIGRRSRGT-MRVAKRLFRRVRDFAQV---AGEEVITRERALEALAAL 238 (324)
T ss_dssp CCCCHHHHHHHHHHHHHTTT--CCCCHHHHHHHHHHSCSC-HHHHHHHHHHHTTTSTT---TSCSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHh
Confidence 99999999999999997763 345556668999998664 46777777766544321 135578999988877654
No 156
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.10 E-value=3.1e-05 Score=76.60 Aligned_cols=140 Identities=11% Similarity=0.159 Sum_probs=94.8
Q ss_pred hhhHHHHhhhhc-CCCeEEEecccccccc---hhhHhhhccccccccccccchhhhccCCCcEEEEe----------eCH
Q psy450 32 LNDIVKINLKKY-NLDIFKYDEVNYLCNV---KYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL----------IRK 97 (478)
Q Consensus 32 ~~~if~~~a~~~-~p~ilfiDe~d~i~~~---r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via----------ld~ 97 (478)
++.++. ..+.. .|+||||||++.+... ..+..++..++.. ...++.+|+ +++
T Consensus 116 ~~~l~~-~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~-------------~~~~~~~I~~~~~~~~~~~~~~ 181 (386)
T 2qby_A 116 YRRLVK-AVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV-------------NKSKISFIGITNDVKFVDLLDP 181 (386)
T ss_dssp HHHHHH-HHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC-------------CC--EEEEEEESCGGGGGGCTT
T ss_pred HHHHHH-HHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc-------------CCCeEEEEEEECCCChHhhhCH
Confidence 455554 44433 3999999999999853 3555666555531 223344444 678
Q ss_pred hHHhccc-cEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHhhcCCC
Q psy450 98 QIQKLFL-KTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTS---GFERHDLTCLVRLSVKNKMLKQGINK 173 (478)
Q Consensus 98 al~rRf~-~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~---G~s~~di~~l~~~a~~~a~~~~~~~~ 173 (478)
.+.+||. +.+.++.|+.++..++++.++.........+.+.++.++..+. | +...+..+++.++..+..+ +.
T Consensus 182 ~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G-~~r~~~~ll~~a~~~a~~~---~~ 257 (386)
T 2qby_A 182 RVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG-DARRALDLLRVSGEIAERM---KD 257 (386)
T ss_dssp HHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHT---TC
T ss_pred HHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhc---CC
Confidence 8888986 4899999999999999999886422123445555678887776 4 4455666788777665432 45
Q ss_pred CCCCHHHHHHHHHHhh
Q psy450 174 RDLQKEDFQQIYDDLQ 189 (478)
Q Consensus 174 ~~it~~d~~~a~~~~~ 189 (478)
..++.+++..++....
T Consensus 258 ~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 258 TKVKEEYVYMAKEEIE 273 (386)
T ss_dssp SSCCHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHh
Confidence 6899999999888764
No 157
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.08 E-value=5e-06 Score=78.69 Aligned_cols=114 Identities=16% Similarity=0.169 Sum_probs=73.2
Q ss_pred hhhhhHHHHhhhhcCCCeEEEecccccccch---------hhHhhhccccccccccccchhhhccCCCcEEEEe------
Q psy450 30 HHLNDIVKINLKKYNLDIFKYDEVNYLCNVK---------YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL------ 94 (478)
Q Consensus 30 ~~~~~if~~~a~~~~p~ilfiDe~d~i~~~r---------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via------ 94 (478)
..++.+|+ .+...+++||||||+|.+++.+ .++.+...++... .....++||+
T Consensus 111 ~~~~~~~~-~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~-----------~~~~~~~ii~ttn~~~ 178 (272)
T 1d2n_A 111 QAMKKIFD-DAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAP-----------PQGRKLLIIGTTSRKD 178 (272)
T ss_dssp HHHHHHHH-HHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCC-----------STTCEEEEEEEESCHH
T ss_pred HHHHHHHH-HHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCcc-----------CCCCCEEEEEecCChh
Confidence 36788898 8888889999999999996432 3444444444321 2345677777
Q ss_pred -eCH-hHHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCC----CHHHHHHHHHHH
Q psy450 95 -IRK-QIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGF----ERHDLTCLVRLS 161 (478)
Q Consensus 95 -ld~-al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~----s~~di~~l~~~a 161 (478)
+|+ .+++||+..|++|.++. |.+|.+...... . .+.+.+..++..+.|+ +..++.++++.|
T Consensus 179 ~l~~~~l~~rf~~~i~~p~l~~--r~~i~~i~~~~~--~--~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a 245 (272)
T 1d2n_A 179 VLQEMEMLNAFSTTIHVPNIAT--GEQLLEALELLG--N--FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMS 245 (272)
T ss_dssp HHHHTTCTTTSSEEEECCCEEE--HHHHHHHHHHHT--C--SCHHHHHHHHHHHTTSEEEECHHHHHHHHHHH
T ss_pred hcchhhhhcccceEEcCCCccH--HHHHHHHHHhcC--C--CCHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Confidence 666 67789999988866654 344444433332 2 2344459999999997 445555555443
No 158
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.08 E-value=5.4e-05 Score=75.09 Aligned_cols=134 Identities=12% Similarity=0.172 Sum_probs=89.0
Q ss_pred hhhhHHHHhhhhcCCCeEEEecccccccch---h-hHhhhccccccccccccchhhhccCCCcEEEEe----------eC
Q psy450 31 HLNDIVKINLKKYNLDIFKYDEVNYLCNVK---Y-VYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL----------IR 96 (478)
Q Consensus 31 ~~~~if~~~a~~~~p~ilfiDe~d~i~~~r---~-~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via----------ld 96 (478)
.+..++. .++...+ ||||||+|.+...+ . +..++... .++.+|+ ++
T Consensus 122 ~~~~l~~-~l~~~~~-vlilDEi~~l~~~~~~~~~l~~l~~~~------------------~~~~iI~~t~~~~~~~~l~ 181 (384)
T 2qby_B 122 YIDKIKN-GTRNIRA-IIYLDEVDTLVKRRGGDIVLYQLLRSD------------------ANISVIMISNDINVRDYME 181 (384)
T ss_dssp HHHHHHH-HHSSSCE-EEEEETTHHHHHSTTSHHHHHHHHTSS------------------SCEEEEEECSSTTTTTTSC
T ss_pred HHHHHHH-HhccCCC-EEEEECHHHhccCCCCceeHHHHhcCC------------------cceEEEEEECCCchHhhhC
Confidence 3555554 4444444 99999999997643 2 33333221 2344444 68
Q ss_pred HhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHHhhcCCCC
Q psy450 97 KQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFE--RHDLTCLVRLSVKNKMLKQGINKR 174 (478)
Q Consensus 97 ~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s--~~di~~l~~~a~~~a~~~~~~~~~ 174 (478)
+++.+||...++|+.|+.++..+|++.++...-.....+.+.++.+++.+.+.+ ...+..+++.|...+. +..
T Consensus 182 ~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~-----~~~ 256 (384)
T 2qby_B 182 PRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS-----GGG 256 (384)
T ss_dssp HHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-----SSS
T ss_pred HHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc-----CCC
Confidence 999999988999999999999999999886411122344445588888876332 2344456666655432 456
Q ss_pred CCCHHHHHHHHHHhh
Q psy450 175 DLQKEDFQQIYDDLQ 189 (478)
Q Consensus 175 ~it~~d~~~a~~~~~ 189 (478)
.|+.+++..++....
T Consensus 257 ~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 257 IIRKEHVDKAIVDYE 271 (384)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHh
Confidence 899999999888764
No 159
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.04 E-value=2e-05 Score=77.21 Aligned_cols=144 Identities=15% Similarity=0.038 Sum_probs=91.1
Q ss_pred CCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe--------eCHhHHhccccEEEeCCC-CH
Q psy450 44 NLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL--------IRKQIQKLFLKTINVLPL-TE 114 (478)
Q Consensus 44 ~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via--------ld~al~rRf~~~i~~~~P-~~ 114 (478)
.++||||||+|.+... ..+.++..++.-...-... .........+++|+ +++++++||+..++++.| +.
T Consensus 144 ~~~vl~iDEi~~l~~~-~~~~Ll~~le~~~~~~~~~-g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~ 221 (350)
T 1g8p_A 144 NRGYLYIDECNLLEDH-IVDLLLDVAQSGENVVERD-GLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDV 221 (350)
T ss_dssp TTEEEEETTGGGSCHH-HHHHHHHHHHHSEEEECCT-TCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSH
T ss_pred CCCEEEEeChhhCCHH-HHHHHHHHHhcCceEEEec-ceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcH
Confidence 4789999999998654 3455666555310000000 00011123567776 899999999999999999 68
Q ss_pred HHHHHHHHHHHh---------------------------hcCCCCCCChhHHHHHHHhcCC---CCHHHHHHHHHHHHHH
Q psy450 115 PERRLLIQYQLD---------------------------CLGGDYGFDASLVEYLSSVTSG---FERHDLTCLVRLSVKN 164 (478)
Q Consensus 115 ~~r~~il~~~~~---------------------------~~~~~~~~~~~~i~~la~~t~G---~s~~di~~l~~~a~~~ 164 (478)
++|.+|++..+. .....+..+.+.++.++....+ -+...+..+++.|...
T Consensus 222 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~ 301 (350)
T 1g8p_A 222 ETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARAL 301 (350)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Confidence 888899876321 1001123444445666665443 2568888888887776
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHhhhhc
Q psy450 165 KMLKQGINKRDLQKEDFQQIYDDLQSRY 192 (478)
Q Consensus 165 a~~~~~~~~~~it~~d~~~a~~~~~~~~ 192 (478)
+..+ +...|+.+|+..++..+....
T Consensus 302 A~~~---~~~~v~~~~v~~a~~~~l~~r 326 (350)
T 1g8p_A 302 AALE---GATAVGRDHLKRVATMALSHR 326 (350)
T ss_dssp HHHT---TCSBCCHHHHHHHHHHHHGGG
T ss_pred HHHc---CCCcCCHHHHHHHHHHHHhhc
Confidence 6543 445699999999988775543
No 160
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.03 E-value=1.7e-05 Score=80.45 Aligned_cols=138 Identities=9% Similarity=0.091 Sum_probs=91.8
Q ss_pred hhhhhHHHHhhhh----cCCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe---------eC
Q psy450 30 HHLNDIVKINLKK----YNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL---------IR 96 (478)
Q Consensus 30 ~~~~~if~~~a~~----~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via---------ld 96 (478)
..++.+|+ .++. ..++||||||+|.+.... .+.++..++. +.+++|+ ++
T Consensus 89 ~~ir~~~~-~a~~~~~~~~~~iLfIDEI~~l~~~~-q~~LL~~le~----------------~~v~lI~att~n~~~~l~ 150 (447)
T 3pvs_A 89 KEIREAIE-RARQNRNAGRRTILFVDEVHRFNKSQ-QDAFLPHIED----------------GTITFIGATTENPSFELN 150 (447)
T ss_dssp HHHHHHHH-HHHHHHHTTCCEEEEEETTTCC-------CCHHHHHT----------------TSCEEEEEESSCGGGSSC
T ss_pred HHHHHHHH-HHHHhhhcCCCcEEEEeChhhhCHHH-HHHHHHHHhc----------------CceEEEecCCCCcccccC
Confidence 35667776 6553 468999999999986543 3445544541 3356665 89
Q ss_pred HhHHhccccEEEeCCCCHHHHHHHHHHHHhhcCC-----CCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcC
Q psy450 97 KQIQKLFLKTINVLPLTEPERRLLIQYQLDCLGG-----DYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGI 171 (478)
Q Consensus 97 ~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~-----~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~ 171 (478)
+++++|+. .+.++.|+.+++.++++.++..... ....+.+.++.++..+.| +...+.++++.++..+.. ...
T Consensus 151 ~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~a~~-~~~ 227 (447)
T 3pvs_A 151 SALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADMAEV-DDS 227 (447)
T ss_dssp HHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHSCB-CTT
T ss_pred HHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhccc-ccC
Confidence 99999995 7889999999999999999976321 233455666888888665 556667777766554320 011
Q ss_pred CCCCCCHHHHHHHHHHh
Q psy450 172 NKRDLQKEDFQQIYDDL 188 (478)
Q Consensus 172 ~~~~it~~d~~~a~~~~ 188 (478)
+...|+.+++..++...
T Consensus 228 ~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 228 GKRVLKPELLTEIAGER 244 (447)
T ss_dssp SCEECCHHHHHHHHTCC
T ss_pred CCCccCHHHHHHHHhhh
Confidence 33579999998887643
No 161
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.99 E-value=2.8e-05 Score=72.67 Aligned_cols=27 Identities=44% Similarity=0.700 Sum_probs=24.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRM 260 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~ 260 (478)
.++++|+||||||||++|.++|+.++.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 467999999999999999999997654
No 162
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.98 E-value=3.6e-05 Score=93.30 Aligned_cols=124 Identities=25% Similarity=0.248 Sum_probs=83.7
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhhhhhcchHHHHHHHHHHhHhCCCeEEEEcCCccccCCCCCCCCC
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQS 315 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~ 315 (478)
+..+.||+|||||.+++.+|+.+|.+++.++|++- .....+..+|.-+... .+-.++|||+.+....
T Consensus 606 gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~------~d~~~~g~i~~G~~~~-GaW~cfDEfNrl~~~v------ 672 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEG------FDLQAMSRIFVGLCQC-GAWGCFDEFNRLEERI------ 672 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSC------CCHHHHHHHHHHHHHH-TCEEEEETTTSSCHHH------
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCC------CCHHHHHHHHhhHhhc-CcEEEehhhhcCCHHH------
Confidence 46799999999999999999999999999999753 2334455566555443 2588999999986321
Q ss_pred chhHHHHHHHHHH--------h-----hc-C--CCCCCCeEEEEEcCC----CCCCCccccCCCCCCeEEEeCCCCCHHH
Q psy450 316 SGVMDRVVSQLLA--------E-----MD-G--VHTSQDVFILGATNR----VDLLDPAILRPGRLDKSLYVGLYEDRIS 375 (478)
Q Consensus 316 ~~~~~~~~~~ll~--------~-----l~-~--~~~~~~v~vI~ttn~----~~~ld~~l~~~~Rf~~~i~~~~pp~~~~ 375 (478)
-.++.+.+. . +. | +.-...+.|++|.|. ...|++.++. || +.+.+.. |+.+.
T Consensus 673 ----LSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~-Pd~~~ 744 (3245)
T 3vkg_A 673 ----LSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIK-PDREM 744 (3245)
T ss_dssp ----HHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCS-CCHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeC-CCHHH
Confidence 122222111 1 11 1 222446778888884 3568999998 88 5588887 68776
Q ss_pred HHHHH
Q psy450 376 QLGVL 380 (478)
Q Consensus 376 r~~il 380 (478)
..+|+
T Consensus 745 i~ei~ 749 (3245)
T 3vkg_A 745 IAQVM 749 (3245)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 163
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.97 E-value=0.0002 Score=70.96 Aligned_cols=135 Identities=8% Similarity=0.025 Sum_probs=92.1
Q ss_pred cCCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe--------eCHhHHhcccc-EEEeCCCC
Q psy450 43 YNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL--------IRKQIQKLFLK-TINVLPLT 113 (478)
Q Consensus 43 ~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via--------ld~al~rRf~~-~i~~~~P~ 113 (478)
..|.||||||+|.+ .....+.++..++..... ...+-.+++++ +++.+.+||.. .+.|+.++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~--------~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~ 194 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKL--------GAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYT 194 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHH--------SSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCB
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCC--------CcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCC
Confidence 45899999999998 445566666666532100 00122233333 78888889975 89999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCC--------CCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q psy450 114 EPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSG--------FERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIY 185 (478)
Q Consensus 114 ~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G--------~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~ 185 (478)
.++..++++..+.........+.+.++.++..+.+ -....+..+++.|+..+..+ +...++.+++..+.
T Consensus 195 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~---~~~~i~~~~v~~~~ 271 (389)
T 1fnn_A 195 KDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQN---GRKHIAPEDVRKSS 271 (389)
T ss_dssp HHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHT---TCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHh---CCCCcCHHHHHHHH
Confidence 99999999998865211223455666889998842 24566777888877766533 45679999998888
Q ss_pred HHhh
Q psy450 186 DDLQ 189 (478)
Q Consensus 186 ~~~~ 189 (478)
....
T Consensus 272 ~~~~ 275 (389)
T 1fnn_A 272 KEVL 275 (389)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 7653
No 164
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.95 E-value=7.6e-05 Score=72.38 Aligned_cols=105 Identities=13% Similarity=0.211 Sum_probs=75.1
Q ss_pred CCCeEEEecccccccch-hhHhhhccccccccccccchhhhccCCCcEEEEe---------eCHhHHhccc--cEEEeCC
Q psy450 44 NLDIFKYDEVNYLCNVK-YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL---------IRKQIQKLFL--KTINVLP 111 (478)
Q Consensus 44 ~p~ilfiDe~d~i~~~r-~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via---------ld~al~rRf~--~~i~~~~ 111 (478)
+++||||||++.+.+.+ ....++..++... ..+..+++.+ +++++++||. ..++++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~-----------~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~ 166 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLY-----------LLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL 166 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHH-----------HTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHH-----------HCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC
Confidence 58999999999998753 3334444444321 2223344444 7899999997 6799999
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy450 112 LTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKN 164 (478)
Q Consensus 112 P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~ 164 (478)
+.++|.+|++.++...+ ...+.+.++.++..+ -+..++..++..+...
T Consensus 167 -~~~e~~~il~~~~~~~~--~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 167 -DNKTRFKIIKEKLKEFN--LELRKEVIDYLLENT--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp -CHHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHc
Confidence 99999999999998763 345566669999998 4667777777766654
No 165
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.85 E-value=0.00012 Score=71.59 Aligned_cols=141 Identities=13% Similarity=0.094 Sum_probs=86.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CC-cEEEEechhhhhhhhcchHHHHHHHHHHhH----hCCCeEEEEcCCcc-
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RM-NFLAVKGPELLNKYIGQSEENIRNVFLKAR----SAAPCVVFFDELDS- 304 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~-~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~- 304 (478)
++.+||+||+|+||++.++.+++.+ +. ++..+... + ...++++++.+. -....|++|||+|.
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~k 88 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPENG 88 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCSSC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCCCC
Confidence 5679999999999999999998865 32 22222111 1 112334443332 24457999999988
Q ss_pred ccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC------CCCccccCCCCCCeEEEeCCCCCHHHHHH
Q psy450 305 LAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD------LLDPAILRPGRLDKSLYVGLYEDRISQLG 378 (478)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~------~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~ 378 (478)
+.. ...+.|+..++.. ..++++|.+++.++ .+.+++.+ |+ ..+.+.. ++..+...
T Consensus 89 l~~-------------~~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~-l~~~~l~~ 149 (343)
T 1jr3_D 89 PNA-------------AINEQLLTLTGLL--HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQT-PEQAQLPR 149 (343)
T ss_dssp CCT-------------THHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECC-CCTTHHHH
T ss_pred CCh-------------HHHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeC-CCHHHHHH
Confidence 642 2456778888753 33445554454432 35567777 76 4677764 57777888
Q ss_pred HHHHHHhcCCCCCCCC-HHHHHHhc
Q psy450 379 VLKAVVRKFKLSDDVS-LDSLVHHF 402 (478)
Q Consensus 379 il~~~~~~~~~~~~~~-~~~la~~~ 402 (478)
+++..++..++.-+.+ +..++..+
T Consensus 150 ~l~~~~~~~g~~i~~~a~~~l~~~~ 174 (343)
T 1jr3_D 150 WVAARAKQLNLELDDAANQVLCYCY 174 (343)
T ss_dssp HHHHHHHHTTCEECHHHHHHHHHSS
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 8888887766443322 44555543
No 166
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.83 E-value=6e-05 Score=73.78 Aligned_cols=111 Identities=21% Similarity=0.279 Sum_probs=61.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhh----hhh-----------cc-hHHHHHHHHHHhHhCCC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLN----KYI-----------GQ-SEENIRNVFLKARSAAP 294 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~----~~~-----------g~-~~~~~~~~~~~a~~~~p 294 (478)
..-++|+||||+|||+++..++..+ +.++++++..+... ... .. .+..+..+-...+...+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~ 140 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVV 140 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCC
Confidence 4558899999999999999998764 56777887643211 000 11 12222222222234678
Q ss_pred eEEEEcCCccccCCC---CCCC-CCchhHHHHHHHHHHhhcCCCCCCCeEEEEE
Q psy450 295 CVVFFDELDSLAPRR---GQED-QSSGVMDRVVSQLLAEMDGVHTSQDVFILGA 344 (478)
Q Consensus 295 ~il~iDeid~l~~~~---~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~t 344 (478)
.+++||.+..+.+.. +..+ .+-....+.+.+++..+..+....++.||.+
T Consensus 141 dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 141 DLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp SEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred CeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 999999999988511 1111 1111223445555554444433445555544
No 167
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.82 E-value=0.00019 Score=75.55 Aligned_cols=166 Identities=15% Similarity=0.096 Sum_probs=90.7
Q ss_pred cccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHH-------hCCcEEEEechh-----hhhh
Q psy450 206 WEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATE-------CRMNFLAVKGPE-----LLNK 273 (478)
Q Consensus 206 ~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~-------~~~~~~~v~~~~-----l~~~ 273 (478)
...++|.+...+.|.+.+.... ...+.++++|++|+|||++|..+++. +...++.++.+. +...
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~ 198 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMK 198 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHH
Confidence 4578999999999988765321 12556899999999999999998642 222344443321 1111
Q ss_pred h------hc----------chHHHHHHHHHHh-Hh-CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC
Q psy450 274 Y------IG----------QSEENIRNVFLKA-RS-AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT 335 (478)
Q Consensus 274 ~------~g----------~~~~~~~~~~~~a-~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 335 (478)
. .+ .....+...+... .. ..|.+|+||+++... .+..+
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-------------------~l~~l----- 254 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-------------------VLKAF----- 254 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-------------------HHHTT-----
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-------------------HHHHh-----
Confidence 1 01 1112222222222 22 257899999986421 11222
Q ss_pred CCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCC--CCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCC
Q psy450 336 SQDVFILGATNRVDLLDPAILRPGRLDKSLYVGL--YEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQM 406 (478)
Q Consensus 336 ~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~--pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~ 406 (478)
..+..||.||+.+..... .. .....+.. |.+.++-.+++......-..........+++++ +|.
T Consensus 255 ~~~~~ilvTsR~~~~~~~--~~----~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~-~G~ 320 (591)
T 1z6t_A 255 DSQCQILLTTRDKSVTDS--VM----GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKEC-KGS 320 (591)
T ss_dssp CSSCEEEEEESCGGGGTT--CC----SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHH-TTC
T ss_pred cCCCeEEEECCCcHHHHh--cC----CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHh-CCC
Confidence 234567777776432110 01 22333432 467888888887766431111123467788887 554
No 168
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.80 E-value=7.3e-05 Score=73.66 Aligned_cols=75 Identities=27% Similarity=0.360 Sum_probs=48.8
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhh----hhc-----------chHHHHHHHHHHh-HhCCC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNK----YIG-----------QSEENIRNVFLKA-RSAAP 294 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~----~~g-----------~~~~~~~~~~~~a-~~~~p 294 (478)
...++++||||+|||++|..++... +.++++++...-... ..| .+...+...+... +...+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~ 153 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAI 153 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCC
Confidence 4568899999999999999987654 567888875432111 111 1122223333332 34568
Q ss_pred eEEEEcCCccccCC
Q psy450 295 CVVFFDELDSLAPR 308 (478)
Q Consensus 295 ~il~iDeid~l~~~ 308 (478)
.+|+||.+..+.+.
T Consensus 154 ~lVVIDsl~~l~~~ 167 (366)
T 1xp8_A 154 DVVVVDSVAALTPR 167 (366)
T ss_dssp SEEEEECTTTCCCS
T ss_pred CEEEEeChHHhccc
Confidence 89999999999853
No 169
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.80 E-value=0.00035 Score=63.45 Aligned_cols=163 Identities=17% Similarity=0.198 Sum_probs=85.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEech--------hhhhhhhc----------c--hHHHHHHHHHHhHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGP--------ELLNKYIG----------Q--SEENIRNVFLKARS 291 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~--------~l~~~~~g----------~--~~~~~~~~~~~a~~ 291 (478)
-.+++.|+||+||||++-.+|..+ |..++.++.. .+...... . .+..+..++ .
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L----~ 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALL----K 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHH----H
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHH----h
Confidence 458999999999999999988776 6666655542 12111000 0 112222322 2
Q ss_pred CCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCC------------------CCCCCc
Q psy450 292 AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNR------------------VDLLDP 353 (478)
Q Consensus 292 ~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~------------------~~~ld~ 353 (478)
..|.++++||+-...... .........+ .. .+. .++=|++|+|- .+.++.
T Consensus 83 ~~pdlvIVDElG~~~~~~---~r~~~~~qDV-~~---~l~-----sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd 150 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPG---SRHTKRWQDI-QE---LLA-----AGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPD 150 (228)
T ss_dssp HCCSEEEESCTTCBCCTT---CSSSBHHHHH-HH---HHH-----TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCH
T ss_pred cCCCEEEEeCCCCCCccc---chhHHHHHHH-HH---HHc-----CCCCEEEEccccccccHHHHHHHHcCCCcCCcCcc
Confidence 468899999987642211 1111111111 11 121 23346777772 144666
Q ss_pred cccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Q psy450 354 AILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLS-DDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRR 425 (478)
Q Consensus 354 ~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~sg~di~~l~~~a~~~a~~r 425 (478)
.+.. +.+....+++||+. +++. ++.-++. .+..-..+.. -|+.+.+.++-.-|...+..+
T Consensus 151 ~~~~--~a~~v~lvD~~p~~-----l~~r-l~~g~vy~~~~~~~a~~~----~f~~~nl~~lrelal~~~a~~ 211 (228)
T 2r8r_A 151 WVLQ--EAFDLVLIDLPPRE-----LLER-LRDGKVYVPEQARAAIDA----FFTQTNLTALREMAMQTAAAQ 211 (228)
T ss_dssp HHHH--TCSEEEEBCCCHHH-----HHHH-HHTTCCCCTTCCHHHHHH----HCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHh--hCCeEEEecCCHHH-----HHHH-HHCCCccChhHHHHHHHh----hhchhhHHHHHHHHHHHHHHH
Confidence 6776 77888888886433 2232 3332222 2221222222 377777776655455444443
No 170
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.79 E-value=6.4e-05 Score=65.92 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=31.8
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPEL 270 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l 270 (478)
+..|+|+|+||+||||+++.+++.++.+++.++...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 3468999999999999999999999998888765544
No 171
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.79 E-value=5.7e-05 Score=72.07 Aligned_cols=78 Identities=23% Similarity=0.319 Sum_probs=49.3
Q ss_pred CCCCceEEEeCCCCChHHHHHHHHHHHh-----CCcEEEEechhhhh----hhhc-----------chHHHH-HHHHHH-
Q psy450 231 GLKRSGLLLYGPPGTGKTLIAKAVATEC-----RMNFLAVKGPELLN----KYIG-----------QSEENI-RNVFLK- 288 (478)
Q Consensus 231 ~~~~~~iLl~Gp~GtGKT~la~~la~~~-----~~~~~~v~~~~l~~----~~~g-----------~~~~~~-~~~~~~- 288 (478)
|.++.-++++||||+|||+++-.++... +..+++++..+-.. ...| .+...+ ..+.+.
T Consensus 25 Gl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 25 GMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp CBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred CCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 4554457899999999999987776543 56788887643211 1111 122222 222222
Q ss_pred --hHhCCCeEEEEcCCccccCC
Q psy450 289 --ARSAAPCVVFFDELDSLAPR 308 (478)
Q Consensus 289 --a~~~~p~il~iDeid~l~~~ 308 (478)
.+...|.+|+||-+..+.++
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBCC
T ss_pred HHhhccCceEEEEecccccccc
Confidence 35568999999999999853
No 172
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.79 E-value=0.00032 Score=80.31 Aligned_cols=168 Identities=15% Similarity=0.080 Sum_probs=95.6
Q ss_pred cccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh-------CCcEEEEechhh-----h--
Q psy450 206 WEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC-------RMNFLAVKGPEL-----L-- 271 (478)
Q Consensus 206 ~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~-------~~~~~~v~~~~l-----~-- 271 (478)
...++|.+...+.|.+.+.... ..++-+.|+|+.|+|||+||+.+++.. ...++.++.+.. .
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 4568999999999988775332 125568899999999999999887652 223445543221 1
Q ss_pred -----hhh---------hcchHHHHHHHHHHhHhCC--CeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCC
Q psy450 272 -----NKY---------IGQSEENIRNVFLKARSAA--PCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHT 335 (478)
Q Consensus 272 -----~~~---------~g~~~~~~~~~~~~a~~~~--p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 335 (478)
... .......+...+....... +.+|+||+++... .++.+
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~----------------------~~~~~-- 254 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW----------------------VLKAF-- 254 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH----------------------HHTTT--
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH----------------------HHHhh--
Confidence 000 0112223333333333333 7899999987431 11112
Q ss_pred CCCeEEEEEcCCCCCCCccccCCCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHhcCCCC
Q psy450 336 SQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQM 406 (478)
Q Consensus 336 ~~~v~vI~ttn~~~~ld~~l~~~~Rf~~~i~~~~pp~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~ 406 (478)
..+..||.||+.+...... . .....+.++.+.+.++-.++|........-.......++++++ +|.
T Consensus 255 ~~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~-~gl 320 (1249)
T 3sfz_A 255 DNQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKEC-KGS 320 (1249)
T ss_dssp CSSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHT-TTC
T ss_pred cCCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHh-CCC
Confidence 2345678788876442211 1 1234555553357788888887766433222223367788887 443
No 173
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.78 E-value=6.3e-05 Score=68.82 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=26.6
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~ 267 (478)
+..++|.||+|+|||++++.++... +.++++++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 4458899999999999999998654 556666653
No 174
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.76 E-value=0.00048 Score=67.10 Aligned_cols=139 Identities=10% Similarity=0.080 Sum_probs=91.3
Q ss_pred CCCeEEEecccccccchhhHhhhccccccccc----cccchhhhccCCCcEEEEe-------eCHhHHhccccEEEeCCC
Q psy450 44 NLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVK----SNETKDQQCKQQHKKKLVL-------IRKQIQKLFLKTINVLPL 112 (478)
Q Consensus 44 ~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~----~~~~~~~~~~~~~~v~via-------ld~al~rRf~~~i~~~~P 112 (478)
.++|+||||++.+.+.. ...++..+...... .......-...-..+.+++ +++++++||...+.++.|
T Consensus 102 ~~~v~~iDE~~~l~~~~-~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~ 180 (334)
T 1in4_A 102 RGDVLFIDEIHRLNKAV-EELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFY 180 (334)
T ss_dssp TTCEEEEETGGGCCHHH-HHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCC
T ss_pred CCCEEEEcchhhcCHHH-HHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCC
Confidence 57899999999997632 22233222211000 0000000000112345555 899999999988999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhh
Q psy450 113 TEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQ 189 (478)
Q Consensus 113 ~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~ 189 (478)
+.+++.+|++......+ ...+.+.+..++.++.|. ...+..+++.+...+..+ +...|+.+++..++..+.
T Consensus 181 ~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~-~R~a~~ll~~~~~~a~~~---~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 181 TVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGT-PRIAIRLTKRVRDMLTVV---KADRINTDIVLKTMEVLN 251 (334)
T ss_dssp CHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTC-HHHHHHHHHHHHHHHHHH---TCSSBCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHc---CCCCcCHHHHHHHHHHhC
Confidence 99999999999887663 344555568999988874 477788888777666533 456799999999988763
No 175
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.74 E-value=9.3e-05 Score=75.95 Aligned_cols=132 Identities=10% Similarity=0.091 Sum_probs=85.8
Q ss_pred CCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe---eCH------hHHhccccEEEeCCCCH
Q psy450 44 NLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL---IRK------QIQKLFLKTINVLPLTE 114 (478)
Q Consensus 44 ~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via---ld~------al~rRf~~~i~~~~P~~ 114 (478)
.++|||||||+.+ +.+..+.++..|+.-.... ..........++|+| +++ |+++||...++++.|+.
T Consensus 109 ~~~IL~IDEI~r~-~~~~q~~LL~~lee~~v~i---~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~ 184 (500)
T 3nbx_X 109 EAEIVFLDEIWKA-GPAILNTLLTAINERQFRN---GAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKVQD 184 (500)
T ss_dssp GCSEEEEESGGGC-CHHHHHHHHHHHHSSEEEC---SSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCEEEECCSCCC
T ss_pred cceeeeHHhHhhh-cHHHHHHHHHHHHHHhccC---CCCcCCcchhhhhhccccCCCccccHHHHHHHHHHHHHHHHhhh
Confidence 5789999999875 4556777887776421110 000112233466677 555 99999999999999986
Q ss_pred -HHHHHHHHHHHhhcCC---------------------CCCCChhHHHHHHHhc---------CCCCHHHHHHHHHHHHH
Q psy450 115 -PERRLLIQYQLDCLGG---------------------DYGFDASLVEYLSSVT---------SGFERHDLTCLVRLSVK 163 (478)
Q Consensus 115 -~~r~~il~~~~~~~~~---------------------~~~~~~~~i~~la~~t---------~G~s~~di~~l~~~a~~ 163 (478)
+++.+|++........ ....+.+.+++++... .|.|.+....+++.|..
T Consensus 185 ~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A 264 (500)
T 3nbx_X 185 KANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQA 264 (500)
T ss_dssp HHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHH
Confidence 7889999875431100 1223334445555543 47888888888888777
Q ss_pred HHHHhhcCCCCCCCHHHHH
Q psy450 164 NKMLKQGINKRDLQKEDFQ 182 (478)
Q Consensus 164 ~a~~~~~~~~~~it~~d~~ 182 (478)
.+..+ +...++++|+.
T Consensus 265 ~A~l~---gr~~Vt~eDv~ 280 (500)
T 3nbx_X 265 SAFFS---GRSAVAPVDLI 280 (500)
T ss_dssp HHHHT---TCSBCCGGGGG
T ss_pred HHhhc---CCccccchHHH
Confidence 76654 55667888776
No 176
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.73 E-value=0.00011 Score=70.68 Aligned_cols=123 Identities=11% Similarity=0.229 Sum_probs=82.2
Q ss_pred hhhcCCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe---e---------------------
Q psy450 40 LKKYNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL---I--------------------- 95 (478)
Q Consensus 40 a~~~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via---l--------------------- 95 (478)
.+....+||||||+|.+.. ...+.++..|+....... .....+-.+ +++|+ .
T Consensus 115 ~~~~~~~vl~lDEi~~l~~-~~~~~Ll~~le~~~~~~~--~~~~~~~~~-~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~ 190 (311)
T 4fcw_A 115 VRRRPYSVILFDAIEKAHP-DVFNILLQMLDDGRLTDS--HGRTVDFRN-TVIIMTSNLGSPLILEGLQKGWPYERIRDE 190 (311)
T ss_dssp HHHCSSEEEEEETGGGSCH-HHHHHHHHHHHHSEEECT--TSCEEECTT-EEEEEEESTTHHHHHTTTTSCCCSSTHHHH
T ss_pred HHhCCCeEEEEeChhhcCH-HHHHHHHHHHhcCEEEcC--CCCEEECCC-cEEEEecccCHHHHHhhhcccccHHHHHHH
Confidence 3444559999999998854 456777777774221100 000011122 33444 2
Q ss_pred ---------CHhHHhccccEEEeCCCCHHHHHHHHHHHHhhcC-------CCCCCChhHHHHHHHhcC--CCCHHHHHHH
Q psy450 96 ---------RKQIQKLFLKTINVLPLTEPERRLLIQYQLDCLG-------GDYGFDASLVEYLSSVTS--GFERHDLTCL 157 (478)
Q Consensus 96 ---------d~al~rRf~~~i~~~~P~~~~r~~il~~~~~~~~-------~~~~~~~~~i~~la~~t~--G~s~~di~~l 157 (478)
+|++.+||+..+.++.|+.+++.+|++.++.... .....+.+.++.++...- ..+..+++++
T Consensus 191 ~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~ 270 (311)
T 4fcw_A 191 VFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRV 270 (311)
T ss_dssp THHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHH
T ss_pred HHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHH
Confidence 4578889999999999999999999999886631 123345556688888655 6788899999
Q ss_pred HHHHHHHHH
Q psy450 158 VRLSVKNKM 166 (478)
Q Consensus 158 ~~~a~~~a~ 166 (478)
++.++..+.
T Consensus 271 i~~~~~~~~ 279 (311)
T 4fcw_A 271 IQRELETPL 279 (311)
T ss_dssp HHHHTHHHH
T ss_pred HHHHHHHHH
Confidence 998888665
No 177
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.69 E-value=0.00012 Score=66.31 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=29.7
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPE 269 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~ 269 (478)
..-++|+||||+|||+++..++...+.++++++...
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 445889999999999999999886677888887543
No 178
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.65 E-value=0.00013 Score=67.36 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=47.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHH--h-------CCcEEEEechhh------hh--hhhc---------------chHHH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATE--C-------RMNFLAVKGPEL------LN--KYIG---------------QSEEN 281 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~--~-------~~~~~~v~~~~l------~~--~~~g---------------~~~~~ 281 (478)
..-++|+||||+|||++++.++.. . +...++++..+. .. ...+ .+...
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 445889999999999999999984 2 456777775431 00 0011 01111
Q ss_pred ----HHHHHHHhHhCCCeEEEEcCCccccC
Q psy450 282 ----IRNVFLKARSAAPCVVFFDELDSLAP 307 (478)
Q Consensus 282 ----~~~~~~~a~~~~p~il~iDeid~l~~ 307 (478)
+..+........|.+|+||++..+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 104 QTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 22233334456789999999998864
No 179
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.63 E-value=0.00062 Score=67.00 Aligned_cols=130 Identities=13% Similarity=0.199 Sum_probs=89.2
Q ss_pred hhhhhHHHHhhhh----cCCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe-------eCHh
Q psy450 30 HHLNDIVKINLKK----YNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL-------IRKQ 98 (478)
Q Consensus 30 ~~~~~if~~~a~~----~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via-------ld~a 98 (478)
..++.+++ .+.. ..+.|+||||+|.+... ..+.++..++. ....+++|. ++++
T Consensus 102 ~~~~~l~~-~~~~~~~~~~~~vliiDe~~~l~~~-~~~~Ll~~le~--------------~~~~~~~Il~~~~~~~l~~~ 165 (373)
T 1jr3_A 102 EDTRDLLD-NVQYAPARGRFKVYLIDEVHMLSRH-SFNALLKTLEE--------------PPEHVKFLLATTDPQKLPVT 165 (373)
T ss_dssp SCHHHHHH-HTTSCCSSSSSEEEEEECGGGSCHH-HHHHHHHHHHS--------------CCSSEEEEEEESCGGGSCHH
T ss_pred HHHHHHHH-HHhhccccCCeEEEEEECcchhcHH-HHHHHHHHHhc--------------CCCceEEEEEeCChHhCcHH
Confidence 35667776 5442 34789999999998543 35666666663 222333333 7899
Q ss_pred HHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCH
Q psy450 99 IQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQK 178 (478)
Q Consensus 99 l~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~ 178 (478)
+.+|+ ..++++.|+.++..++++.++...+ ...+.+.++.++..+.| +..++.++++.+... ....|+.
T Consensus 166 l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~--~~~~~~a~~~l~~~~~G-~~r~~~~~l~~~~~~-------~~~~i~~ 234 (373)
T 1jr3_A 166 ILSRC-LQFHLKALDVEQIRHQLEHILNEEH--IAHEPRALQLLARAAEG-SLRDALSLTDQAIAS-------GDGQVST 234 (373)
T ss_dssp HHTTS-EEEECCCCCHHHHHHHHHHHHHHHT--CCBCHHHHHHHHHHSSS-CHHHHHHHHHHHHHH-------TTTCBCH
T ss_pred HHhhe-eEeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHh-------cCCcccH
Confidence 99998 7899999999999999999987653 34455555889998876 566777777665432 1245787
Q ss_pred HHHHHHHH
Q psy450 179 EDFQQIYD 186 (478)
Q Consensus 179 ~d~~~a~~ 186 (478)
+++..++.
T Consensus 235 ~~v~~~~~ 242 (373)
T 1jr3_A 235 QAVSAMLG 242 (373)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 77765543
No 180
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.63 E-value=0.00017 Score=74.73 Aligned_cols=130 Identities=12% Similarity=0.024 Sum_probs=82.5
Q ss_pred hhhHHHHhh-----hhcCCCeEEEecccccccch--hhHhhhccccccccccccchhhhccCCCcEEEEe--e-C---Hh
Q psy450 32 LNDIVKINL-----KKYNLDIFKYDEVNYLCNVK--YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL--I-R---KQ 98 (478)
Q Consensus 32 ~~~if~~~a-----~~~~p~ilfiDe~d~i~~~r--~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via--l-d---~a 98 (478)
++.+|. .+ ...+++||||||+|.+.... .++.++..++ .....+++++ . + +.
T Consensus 132 ~~~~~~-~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--------------~~~~~iIli~~~~~~~~l~~ 196 (516)
T 1sxj_A 132 VVGYFK-HNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--------------KTSTPLILICNERNLPKMRP 196 (516)
T ss_dssp STTTTT-C----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--------------HCSSCEEEEESCTTSSTTGG
T ss_pred HHHHHh-hhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--------------hcCCCEEEEEcCCCCccchh
Confidence 455665 44 34578999999999998643 3445554444 2344577777 1 1 22
Q ss_pred HHhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCH
Q psy450 99 IQKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQK 178 (478)
Q Consensus 99 l~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~ 178 (478)
+ +|+...+.|+.|+.+++.++|...+...+..+ +.+.++.+++.+.| |++.+++.....+. ....++.
T Consensus 197 l-~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i--~~~~l~~la~~s~G----diR~~i~~L~~~~~-----~~~~It~ 264 (516)
T 1sxj_A 197 F-DRVCLDIQFRRPDANSIKSRLMTIAIREKFKL--DPNVIDRLIQTTRG----DIRQVINLLSTIST-----TTKTINH 264 (516)
T ss_dssp G-TTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHTTT----CHHHHHHHHTHHHH-----HSSCCCT
T ss_pred h-HhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCC----cHHHHHHHHHHHHh-----cCCCCch
Confidence 3 34557899999999999999998886653333 33445899988754 55554443322222 2456788
Q ss_pred HHHHHHHHHh
Q psy450 179 EDFQQIYDDL 188 (478)
Q Consensus 179 ~d~~~a~~~~ 188 (478)
+++..++...
T Consensus 265 ~~v~~~~~~~ 274 (516)
T 1sxj_A 265 ENINEISKAW 274 (516)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 8877766543
No 181
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.59 E-value=0.00022 Score=72.76 Aligned_cols=125 Identities=15% Similarity=0.269 Sum_probs=66.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CC-cEEEEechhhhhh---
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RM-NFLAVKGPELLNK--- 273 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~-~~~~v~~~~l~~~--- 273 (478)
+.+.+++++. +.+++.+...+...... ...+++.|+||||||+++.+++..+ +. .++.+....-...
T Consensus 18 ~~p~~~~~Ln--~~Q~~av~~~~~~i~~~----~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 18 GSHMTFDDLT--EGQKNAFNIVMKAIKEK----KHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILS 91 (459)
T ss_dssp ---CCSSCCC--HHHHHHHHHHHHHHHSS----SCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHH
T ss_pred cCCCccccCC--HHHHHHHHHHHHHHhcC----CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHH
Confidence 3445566553 34555555444443322 2369999999999999999998876 33 4555544322111
Q ss_pred -hhcchHHHHHHHHHHh----------------HhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCC
Q psy450 274 -YIGQSEENIRNVFLKA----------------RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTS 336 (478)
Q Consensus 274 -~~g~~~~~~~~~~~~a----------------~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 336 (478)
..+.....++.++... ......+|++||+..+. ...+..++..+. ..
T Consensus 92 ~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~-------------~~~~~~l~~~~~---~~ 155 (459)
T 3upu_A 92 KLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYD-------------RKLFKILLSTIP---PW 155 (459)
T ss_dssp HHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCC-------------HHHHHHHHHHSC---TT
T ss_pred hhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCC-------------HHHHHHHHHhcc---CC
Confidence 1111111222333210 01134699999998765 234555555553 33
Q ss_pred CCeEEEEEcCC
Q psy450 337 QDVFILGATNR 347 (478)
Q Consensus 337 ~~v~vI~ttn~ 347 (478)
.++++++-.+.
T Consensus 156 ~~~~~vGD~~Q 166 (459)
T 3upu_A 156 CTIIGIGDNKQ 166 (459)
T ss_dssp CEEEEEECTTS
T ss_pred CEEEEECCHHH
Confidence 45666665544
No 182
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.56 E-value=0.0002 Score=70.12 Aligned_cols=74 Identities=23% Similarity=0.320 Sum_probs=47.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhh----hhhhc-----------chHHHHHHHHH-HhHhCCC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELL----NKYIG-----------QSEENIRNVFL-KARSAAP 294 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~----~~~~g-----------~~~~~~~~~~~-~a~~~~p 294 (478)
..-++++||||+|||+++..++... +.++++++...-. ....| .+...+..+.. .++...|
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~ 140 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAL 140 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCC
Confidence 4558999999999999999998654 5677777753311 11111 11122222222 2335678
Q ss_pred eEEEEcCCccccC
Q psy450 295 CVVFFDELDSLAP 307 (478)
Q Consensus 295 ~il~iDeid~l~~ 307 (478)
.+|+||++..+.+
T Consensus 141 ~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 141 DIIVIDSVAALVP 153 (349)
T ss_dssp SEEEEECGGGCCC
T ss_pred CEEEEcChHhhcc
Confidence 9999999999874
No 183
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.55 E-value=0.0001 Score=71.60 Aligned_cols=73 Identities=12% Similarity=0.190 Sum_probs=47.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---------CCcEEEEechhh---------hhhhhcc----------------hH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---------RMNFLAVKGPEL---------LNKYIGQ----------------SE 279 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---------~~~~~~v~~~~l---------~~~~~g~----------------~~ 279 (478)
..-++++||||+|||+++..++... +.++++++...- ... .|. .+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~-~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA-LGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH-TTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH-hCCCHHHHhccEEEEeCCCHH
Confidence 4568999999999999999998765 457788876431 110 110 11
Q ss_pred ---HHHHHHHHHhHh-CCCeEEEEcCCccccC
Q psy450 280 ---ENIRNVFLKARS-AAPCVVFFDELDSLAP 307 (478)
Q Consensus 280 ---~~~~~~~~~a~~-~~p~il~iDeid~l~~ 307 (478)
..+..+...... ..+.+|+||.+..+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 112233333344 6789999999999863
No 184
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.54 E-value=0.0007 Score=66.06 Aligned_cols=124 Identities=9% Similarity=0.078 Sum_probs=82.5
Q ss_pred CCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe-----eCHhHHhccccEEEeCCCCHHHHH
Q psy450 44 NLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL-----IRKQIQKLFLKTINVLPLTEPERR 118 (478)
Q Consensus 44 ~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via-----ld~al~rRf~~~i~~~~P~~~~r~ 118 (478)
.+.||||||+|.+.... .+.++..|+.. .....+++++ +++++++|+. .+.|+.|+.++..
T Consensus 133 ~~~vliiDE~~~l~~~~-~~~Ll~~le~~------------~~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~ 198 (353)
T 1sxj_D 133 PYKIIILDEADSMTADA-QSALRRTMETY------------SGVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAI 198 (353)
T ss_dssp SCEEEEETTGGGSCHHH-HHHHHHHHHHT------------TTTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHH
T ss_pred CceEEEEECCCccCHHH-HHHHHHHHHhc------------CCCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHH
Confidence 45699999999987543 45566666632 1222344444 8999999996 8999999999999
Q ss_pred HHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q psy450 119 LLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYD 186 (478)
Q Consensus 119 ~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~ 186 (478)
.+++..+... ....+.+.++.++..+.|. ...+.++++.++..+-.. .....|+.+|+..+..
T Consensus 199 ~~l~~~~~~~--~~~i~~~~l~~l~~~~~G~-~r~~~~~l~~~~~~~~~~--~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 199 DRLRFISEQE--NVKCDDGVLERILDISAGD-LRRGITLLQSASKGAQYL--GDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHHTT--TCCCCHHHHHHHHHHTSSC-HHHHHHHHHHTHHHHHHH--CSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHh--CCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHHHhcCCC--ccCccccHHHHHHHhC
Confidence 9999988665 3344556669999988864 344444444444332211 1112689888876655
No 185
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.54 E-value=0.00035 Score=65.18 Aligned_cols=37 Identities=30% Similarity=0.462 Sum_probs=32.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPEL 270 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l 270 (478)
+..++|.|+||+||||+++.++..++..++.++...+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 6679999999999999999999999876777777655
No 186
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.53 E-value=0.00035 Score=66.52 Aligned_cols=37 Identities=30% Similarity=0.522 Sum_probs=30.7
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPEL 270 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l 270 (478)
+..++|.||||+||||+++.++..++..++.+++..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 6678999999999999999999998655677776444
No 187
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.52 E-value=0.00015 Score=71.16 Aligned_cols=74 Identities=22% Similarity=0.350 Sum_probs=48.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechh----hhhhhhc-----------chHHHHHHHHHHh-HhCCC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPE----LLNKYIG-----------QSEENIRNVFLKA-RSAAP 294 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~----l~~~~~g-----------~~~~~~~~~~~~a-~~~~p 294 (478)
...++++|+||+|||++|..++... +.++++++... ......| .+...+..++... +...+
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~ 142 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 142 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCC
Confidence 4568999999999999999998654 66788887632 1111111 1222333333332 34678
Q ss_pred eEEEEcCCccccC
Q psy450 295 CVVFFDELDSLAP 307 (478)
Q Consensus 295 ~il~iDeid~l~~ 307 (478)
.+|+||.+..+.+
T Consensus 143 ~lVVIDsl~~l~~ 155 (356)
T 1u94_A 143 DVIVVDSVAALTP 155 (356)
T ss_dssp SEEEEECGGGCCC
T ss_pred CEEEEcCHHHhcc
Confidence 8999999999875
No 188
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.52 E-value=0.00017 Score=84.42 Aligned_cols=113 Identities=19% Similarity=0.332 Sum_probs=71.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhh----hc--------chHHHHHHHHHHhHh----CCC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKY----IG--------QSEENIRNVFLKARS----AAP 294 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~----~g--------~~~~~~~~~~~~a~~----~~p 294 (478)
+..++|+|+||+|||++|..+|..+ +.++++++..+...+. .| ..+..+.+++..++. ..|
T Consensus 732 G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~~~~ 811 (2050)
T 3cmu_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 811 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhccCC
Confidence 5568999999999999999998876 4568888875433322 22 111223444444433 678
Q ss_pred eEEEEcCCccccC-CC--CC-CCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcC
Q psy450 295 CVVFFDELDSLAP-RR--GQ-EDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATN 346 (478)
Q Consensus 295 ~il~iDeid~l~~-~~--~~-~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn 346 (478)
++|+||.++.+.. .. +. ++.+.+...+.+.+++..+..+....++.||++..
T Consensus 812 ~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Q 867 (2050)
T 3cmu_A 812 DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (2050)
T ss_dssp SEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 9999999999985 21 11 11122333445666666666655666777777654
No 189
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.50 E-value=0.00019 Score=69.41 Aligned_cols=119 Identities=11% Similarity=0.007 Sum_probs=69.9
Q ss_pred CCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe-----eCHhHHhccccEEEeCCCCHHHHH
Q psy450 44 NLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL-----IRKQIQKLFLKTINVLPLTEPERR 118 (478)
Q Consensus 44 ~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via-----ld~al~rRf~~~i~~~~P~~~~r~ 118 (478)
.+.||||||+|.+.+....+.++..++.. .....+++.+ +++++.+|| ..++|+.|+.++|.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~------------~~~~~iI~~~n~~~~l~~~l~sR~-~~i~~~~~~~~e~~ 171 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAY------------SSNCSIIITANNIDGIIKPLQSRC-RVITFGQPTDEDKI 171 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHH------------GGGCEEEEEESSGGGSCTTHHHHS-EEEECCCCCHHHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhC------------CCCcEEEEEeCCccccCHHHHhhC-cEEEeCCCCHHHHH
Confidence 67999999999997455566677666632 1122233333 899999999 47999999999988
Q ss_pred HHHHHHHhhcC-----CCCCCCh-hHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q psy450 119 LLIQYQLDCLG-----GDYGFDA-SLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIY 185 (478)
Q Consensus 119 ~il~~~~~~~~-----~~~~~~~-~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~ 185 (478)
+|++.+..... .....+. +.++.++..+.|-.. ++.+.++.++ ....|+.+++..+.
T Consensus 172 ~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R-~a~~~L~~~~---------~~~~i~~~~v~~~~ 234 (324)
T 3u61_B 172 EMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFR-KTIGELDSYS---------SKGVLDAGILSLVT 234 (324)
T ss_dssp HHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTT-HHHHHHHHHG---------GGTCBCC-------
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHH-HHHHHHHHHh---------ccCCCCHHHHHHHh
Confidence 77666553320 0223333 555888888665432 2333333332 12346666665443
No 190
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.49 E-value=8.3e-05 Score=65.44 Aligned_cols=73 Identities=12% Similarity=0.119 Sum_probs=48.3
Q ss_pred hhhhHHHHhh-hhcCCCeEEEecccccccch-------hhHhhhccccccccccccchhhhccCCCcEEEEe--------
Q psy450 31 HLNDIVKINL-KKYNLDIFKYDEVNYLCNVK-------YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL-------- 94 (478)
Q Consensus 31 ~~~~if~~~a-~~~~p~ilfiDe~d~i~~~r-------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via-------- 94 (478)
.++.+|. .+ +...|+||||||+|.+.+.+ ..+.+...++ .+.+.+|+
T Consensus 102 ~~~~~~~-~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~----------------~~~~~~i~~~~~~~~~ 164 (195)
T 1jbk_A 102 RLKGVLN-DLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA----------------RGELHCVGATTLDEYR 164 (195)
T ss_dssp HHHHHHH-HHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH----------------TTSCCEEEEECHHHHH
T ss_pred HHHHHHH-HHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc----------------cCCeEEEEeCCHHHHH
Confidence 5666776 44 34568999999999997543 1111111111 22333333
Q ss_pred ----eCHhHHhccccEEEeCCCCHHHHHHHH
Q psy450 95 ----IRKQIQKLFLKTINVLPLTEPERRLLI 121 (478)
Q Consensus 95 ----ld~al~rRf~~~i~~~~P~~~~r~~il 121 (478)
+|+++.+||+ .++++.|+.++|.+||
T Consensus 165 ~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 165 QYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred HHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 5899999998 6999999999998876
No 191
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.49 E-value=0.0012 Score=63.16 Aligned_cols=117 Identities=12% Similarity=0.056 Sum_probs=77.2
Q ss_pred cCCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe-------eCHhHHhccccEEEeCCCCHH
Q psy450 43 YNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL-------IRKQIQKLFLKTINVLPLTEP 115 (478)
Q Consensus 43 ~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via-------ld~al~rRf~~~i~~~~P~~~ 115 (478)
..+.|+||||+|.+... ..+.++..++. ....+.+|. +++++.+|+. .+.|+.|+.+
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~L~~~le~--------------~~~~~~~i~~~~~~~~l~~~l~sr~~-~i~~~~~~~~ 164 (319)
T 2chq_A 101 APFKIIFLDEADALTAD-AQAALRRTMEM--------------YSKSCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKE 164 (319)
T ss_dssp CCCEEEEEETGGGSCHH-HHHTTGGGTSS--------------SSSSEEEEEEESCGGGSCHHHHTTCE-EEECCCCCHH
T ss_pred CCceEEEEeCCCcCCHH-HHHHHHHHHHh--------------cCCCCeEEEEeCChhhcchHHHhhCe-EEEecCCCHH
Confidence 45899999999998653 34556666663 122233333 8999999995 8999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q psy450 116 ERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYD 186 (478)
Q Consensus 116 ~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~ 186 (478)
++.+++..++... ....+.+.++.++..+.| +...+.++++.++ . ....++.+++.....
T Consensus 165 ~~~~~l~~~~~~~--~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~---~-----~~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 165 AMKKRLLEICEKE--GVKITEDGLEALIYISGG-DFRKAINALQGAA---A-----IGEVVDADTIYQITA 224 (319)
T ss_dssp HHHHHHHHHHHTT--CCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHH---H-----SSSCBCHHHHHHHTT
T ss_pred HHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH---H-----cCCCCCHHHHHHHHC
Confidence 9999999998765 334455555888876654 2333333333332 1 134688877765543
No 192
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.47 E-value=0.00048 Score=72.08 Aligned_cols=111 Identities=20% Similarity=0.273 Sum_probs=62.6
Q ss_pred cHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhh----hcchHHHHHH
Q psy450 212 LSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKY----IGQSEENIRN 284 (478)
Q Consensus 212 ~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~----~g~~~~~~~~ 284 (478)
.+.+++.+...+. ...++++||||||||+++.+++..+ +.++..+..+.-.... .+.....+..
T Consensus 191 ~~~Q~~Av~~~~~---------~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ 261 (574)
T 3e1s_A 191 SEEQASVLDQLAG---------HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHR 261 (574)
T ss_dssp CHHHHHHHHHHTT---------CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHH
T ss_pred CHHHHHHHHHHHh---------CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHH
Confidence 4556655554431 3468999999999999999998755 6666655443221111 1111112222
Q ss_pred HHHHh---------HhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCC
Q psy450 285 VFLKA---------RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNR 347 (478)
Q Consensus 285 ~~~~a---------~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~ 347 (478)
++... ......+|+|||+..+. ...+..++..+. ...++++++-.+.
T Consensus 262 ll~~~~~~~~~~~~~~~~~dvlIIDEasml~-------------~~~~~~Ll~~~~---~~~~lilvGD~~Q 317 (574)
T 3e1s_A 262 LLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG-------------DALMLSLLAAVP---PGARVLLVGDTDQ 317 (574)
T ss_dssp HTTEETTEESCSSSSCCSCSEEEECCGGGCC-------------HHHHHHHHTTSC---TTCEEEEEECTTS
T ss_pred HHcCCcchhhhhhcccccCCEEEEcCccCCC-------------HHHHHHHHHhCc---CCCEEEEEecccc
Confidence 22110 11134799999998775 234555554433 3445667765554
No 193
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.47 E-value=8.9e-05 Score=65.46 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=28.6
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAV 265 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v 265 (478)
+..|+|+|+|||||||+++.+++.++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45699999999999999999999999988654
No 194
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.47 E-value=0.002 Score=64.69 Aligned_cols=72 Identities=15% Similarity=0.058 Sum_probs=49.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhh----------h----------hhcchHHHHHHHHHHhH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLN----------K----------YIGQSEENIRNVFLKAR 290 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~----------~----------~~g~~~~~~~~~~~~a~ 290 (478)
|.-+++.|++|+||||++..+|..+ |..+..+++..+.. . ........+...+..+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999998766 66676666532210 0 01223444566777777
Q ss_pred hCCCeEEEEcCCccc
Q psy450 291 SAAPCVVFFDELDSL 305 (478)
Q Consensus 291 ~~~p~il~iDeid~l 305 (478)
...+.+++||....+
T Consensus 180 ~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRH 194 (443)
T ss_dssp HTTCSEEEEECCCCS
T ss_pred hCCCCEEEEECCCcc
Confidence 777789999987443
No 195
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.44 E-value=0.00012 Score=66.91 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.6
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
..-+.|.||+|+||||+++.++...
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4458899999999999999999754
No 196
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.42 E-value=0.00018 Score=70.35 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=29.9
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh---------CCcEEEEechh
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC---------RMNFLAVKGPE 269 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~---------~~~~~~v~~~~ 269 (478)
|.+ ..-++++||||+|||+++..++... +.++++++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 444 4457899999999999999998862 45677877643
No 197
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.41 E-value=0.00025 Score=70.67 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=45.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---------CCcEEEEechhhh--------hhhhcch------------------
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---------RMNFLAVKGPELL--------NKYIGQS------------------ 278 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---------~~~~~~v~~~~l~--------~~~~g~~------------------ 278 (478)
..-+.|+||||+|||++++.++-.. +...++++..+.. ....|..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~~~ 257 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADH 257 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCChHH
Confidence 4458899999999999999776432 2347777754310 0001110
Q ss_pred -HHHHHHHHHHhHhCCCeEEEEcCCccccCC
Q psy450 279 -EENIRNVFLKARSAAPCVVFFDELDSLAPR 308 (478)
Q Consensus 279 -~~~~~~~~~~a~~~~p~il~iDeid~l~~~ 308 (478)
...+..+........|.+|+||++-.+...
T Consensus 258 ~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 258 QLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred HHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 111222333334567899999999888753
No 198
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.38 E-value=0.00028 Score=64.40 Aligned_cols=72 Identities=19% Similarity=0.149 Sum_probs=44.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechh-------hhhhhhcch-----HHHHHHHHHHhHh----CCC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPE-------LLNKYIGQS-----EENIRNVFLKARS----AAP 294 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~-------l~~~~~g~~-----~~~~~~~~~~a~~----~~p 294 (478)
..-++++||+|+|||+++..++..+ +..++.++... +.+. .|.. .....+++..+.. ..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 3447789999999999998887766 56666664321 1111 1110 0011234444443 357
Q ss_pred eEEEEcCCcccc
Q psy450 295 CVVFFDELDSLA 306 (478)
Q Consensus 295 ~il~iDeid~l~ 306 (478)
.+|+|||++.+.
T Consensus 91 dvViIDEaQ~l~ 102 (223)
T 2b8t_A 91 KVIGIDEVQFFD 102 (223)
T ss_dssp CEEEECSGGGSC
T ss_pred CEEEEecCccCc
Confidence 899999998764
No 199
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.36 E-value=0.00073 Score=66.89 Aligned_cols=89 Identities=7% Similarity=0.004 Sum_probs=60.2
Q ss_pred eCHhHHhccccEEEeCCCCHHHHHHHHHH----HHhh-------cCCCCCCChhHHHHHHHhcC--CCCHHHHHHHHHHH
Q psy450 95 IRKQIQKLFLKTINVLPLTEPERRLLIQY----QLDC-------LGGDYGFDASLVEYLSSVTS--GFERHDLTCLVRLS 161 (478)
Q Consensus 95 ld~al~rRf~~~i~~~~P~~~~r~~il~~----~~~~-------~~~~~~~~~~~i~~la~~t~--G~s~~di~~l~~~a 161 (478)
+.|++.+||+..+.|+.++.++..+|+.. ++.. .+..+..+.+.++.|+.... +.....+++++..+
T Consensus 256 ~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~ 335 (376)
T 1um8_A 256 LIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDF 335 (376)
T ss_dssp CCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHH
T ss_pred CChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHH
Confidence 35777888989999999999999999962 2211 11123345555678877643 46788999999999
Q ss_pred HHHHHHhhc---CCCCCCCHHHHHH
Q psy450 162 VKNKMLKQG---INKRDLQKEDFQQ 183 (478)
Q Consensus 162 ~~~a~~~~~---~~~~~it~~d~~~ 183 (478)
+..++.+.. .....|+.+++..
T Consensus 336 ~~~~~~~~~~~~~~~~~i~~~~v~~ 360 (376)
T 1um8_A 336 CLDIMFDLPKLKGSEVRITKDCVLK 360 (376)
T ss_dssp HHHHHHTGGGGTTSEEEECHHHHTT
T ss_pred HHHHHhhccCCCCCEEEEeHHHhcC
Confidence 888765422 2234577777644
No 200
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.35 E-value=0.00014 Score=64.41 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=23.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEe
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVK 266 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~ 266 (478)
.-++++||+|+|||+++..++..+ +.+++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 347899999999999987666544 55555543
No 201
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.34 E-value=0.0014 Score=58.06 Aligned_cols=117 Identities=15% Similarity=0.134 Sum_probs=66.7
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEech---------hhhhhhh-----------------cchHHHHHHH
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGP---------ELLNKYI-----------------GQSEENIRNV 285 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~---------~l~~~~~-----------------g~~~~~~~~~ 285 (478)
..+++++++|.||||+|-++|-.. |.++..+... .+..... ..........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 458999999999999999997655 7777777321 2333220 0012334444
Q ss_pred HHHhH----hCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCCCCCccccCCCCC
Q psy450 286 FLKAR----SAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRL 361 (478)
Q Consensus 286 ~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~~ld~~l~~~~Rf 361 (478)
+..++ .....+|++||+-....-.- - -...++..+.. ...+.-||.|+|.+ ++.|.. .-
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~----l------~~~ev~~~l~~--Rp~~~~vIlTGr~a---p~~l~e--~A 171 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDY----L------PLEEVISALNA--RPGHQTVIITGRGC---HRDILD--LA 171 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTS----S------CHHHHHHHHHT--SCTTCEEEEECSSC---CHHHHH--HC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCC----C------CHHHHHHHHHh--CcCCCEEEEECCCC---cHHHHH--hC
Confidence 54443 35578999999965421110 0 01234444442 23456788888874 455554 44
Q ss_pred CeEEEeC
Q psy450 362 DKSLYVG 368 (478)
Q Consensus 362 ~~~i~~~ 368 (478)
|.+-++.
T Consensus 172 D~VTem~ 178 (196)
T 1g5t_A 172 DTVSELR 178 (196)
T ss_dssp SEEEECC
T ss_pred cceeeec
Confidence 5444443
No 202
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.31 E-value=0.00014 Score=63.10 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=27.6
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEe
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVK 266 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~ 266 (478)
.|+|.|+||+||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4889999999999999999999998876554
No 203
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.31 E-value=0.0022 Score=61.53 Aligned_cols=119 Identities=9% Similarity=0.039 Sum_probs=78.4
Q ss_pred CCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe-----eCHhHHhccccEEEeCCCCHHHHH
Q psy450 44 NLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL-----IRKQIQKLFLKTINVLPLTEPERR 118 (478)
Q Consensus 44 ~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via-----ld~al~rRf~~~i~~~~P~~~~r~ 118 (478)
.+.|+||||+|.+.... .+.++..++.. ..+..+++++ +++++.+|+. .+.|+.|+.++..
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~------------~~~~~~il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~ 172 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELY------------SNSTRFAFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVL 172 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHT------------TTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHH
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhcc------------CCCceEEEEeCChhhchhHHHhhce-EEeecCCCHHHHH
Confidence 48899999999986543 44555555521 1122233333 8899999985 8999999999999
Q ss_pred HHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q psy450 119 LLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDD 187 (478)
Q Consensus 119 ~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~ 187 (478)
++++.++...+ ...+.+.++.++..+.|-. ..+.++++.+... ...++.+++..++..
T Consensus 173 ~~l~~~~~~~~--~~~~~~~~~~l~~~~~G~~-r~a~~~l~~~~~~--------~~~i~~~~v~~~~~~ 230 (323)
T 1sxj_B 173 KRLLQIIKLED--VKYTNDGLEAIIFTAEGDM-RQAINNLQSTVAG--------HGLVNADNVFKIVDS 230 (323)
T ss_dssp HHHHHHHHHHT--CCBCHHHHHHHHHHHTTCH-HHHHHHHHHHHHH--------HSSBCHHHHHHHHTS
T ss_pred HHHHHHHHHcC--CCCCHHHHHHHHHHcCCCH-HHHHHHHHHHHhc--------CCCcCHHHHHHHHCC
Confidence 99999887653 3344555588988886643 3344444433321 135888888776653
No 204
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.31 E-value=0.0011 Score=61.20 Aligned_cols=34 Identities=29% Similarity=0.222 Sum_probs=24.9
Q ss_pred CceEEEeCCCCChHHHHHHHHH--HH--hCCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVA--TE--CRMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la--~~--~~~~~~~v~~ 267 (478)
+.-+.|.||+|+||||+++.++ .. .+...+.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 4458899999999999999998 32 2445555543
No 205
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.31 E-value=0.0012 Score=68.12 Aligned_cols=73 Identities=14% Similarity=0.258 Sum_probs=50.2
Q ss_pred eEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC--CCCccccCCCCCCeEEEeCCCCC
Q psy450 295 CVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD--LLDPAILRPGRLDKSLYVGLYED 372 (478)
Q Consensus 295 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~--~ld~~l~~~~Rf~~~i~~~~pp~ 372 (478)
-+|+|||++.+.... .......+..+... ...-++.+|.+|.+|. .++..++. -|...|.+.. .+
T Consensus 345 ivvVIDE~~~L~~~~------~~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv-~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV------GKKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQV-SS 411 (574)
T ss_dssp EEEEESCCTTHHHHT------CHHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECC-SC
T ss_pred EEEEEeCHHHHhhhh------hHHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEc-CC
Confidence 589999999886421 11122333333322 2345799999999997 78888887 8899999988 67
Q ss_pred HHHHHHHH
Q psy450 373 RISQLGVL 380 (478)
Q Consensus 373 ~~~r~~il 380 (478)
..+...|+
T Consensus 412 ~~Dsr~IL 419 (574)
T 2iut_A 412 KIDSRTIL 419 (574)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77766666
No 206
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.30 E-value=0.00018 Score=64.48 Aligned_cols=32 Identities=31% Similarity=0.477 Sum_probs=28.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAV 265 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v 265 (478)
+..++|.|||||||||+++.+++.++.+++..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 45699999999999999999999999887643
No 207
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.29 E-value=0.0033 Score=62.58 Aligned_cols=131 Identities=11% Similarity=0.152 Sum_probs=86.8
Q ss_pred cCCCeEEEecccccccc-----hhhHhhhccccccccccccchhhhccCC--CcEEEEe----------eC---HhHHhc
Q psy450 43 YNLDIFKYDEVNYLCNV-----KYVYFKLCSFDSVNVKSNETKDQQCKQQ--HKKKLVL----------IR---KQIQKL 102 (478)
Q Consensus 43 ~~p~ilfiDe~d~i~~~-----r~~~~~l~~~d~~~~~~~~~~~~~~~~~--~~v~via----------ld---~al~rR 102 (478)
.+|.||+|||++.+... ..+..++..++... ..+ .++.+|+ ++ +.+.+|
T Consensus 137 ~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~-----------~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~ 205 (412)
T 1w5s_A 137 NHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIP-----------SRDGVNRIGFLLVASDVRALSYMREKIPQVESQ 205 (412)
T ss_dssp TCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSC-----------CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTT
T ss_pred CCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcc-----------cCCCCceEEEEEEeccccHHHHHhhhcchhhhh
Confidence 56999999999998753 34444444444210 012 4555554 33 667778
Q ss_pred cccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy450 103 FLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTS------GFERHDLTCLVRLSVKNKMLKQGINKRDL 176 (478)
Q Consensus 103 f~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~------G~s~~di~~l~~~a~~~a~~~~~~~~~~i 176 (478)
|...+.++.++.++..++++..+.........+.+.++.++..+. |. +..+..+++.+...+..+ +...+
T Consensus 206 ~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~-p~~~~~l~~~a~~~a~~~---~~~~i 281 (412)
T 1w5s_A 206 IGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGS-ARRAIVALKMACEMAEAM---GRDSL 281 (412)
T ss_dssp CSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCC-HHHHHHHHHHHHHHHHHT---TCSSC
T ss_pred cCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHHHHHHc---CCCCC
Confidence 877799999999999999988775432122344555688888888 64 456777777776655432 44568
Q ss_pred CHHHHHHHHHHh
Q psy450 177 QKEDFQQIYDDL 188 (478)
Q Consensus 177 t~~d~~~a~~~~ 188 (478)
+.+++..++...
T Consensus 282 ~~~~v~~~~~~~ 293 (412)
T 1w5s_A 282 SEDLVRKAVSEN 293 (412)
T ss_dssp CHHHHHHHHHHC
T ss_pred CHHHHHHHHHHH
Confidence 888888777654
No 208
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.27 E-value=0.00021 Score=62.04 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=28.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAV 265 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v 265 (478)
..+++|.|+|||||||+++.+++.++.+++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 34699999999999999999999999988653
No 209
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.27 E-value=0.00065 Score=71.45 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=87.0
Q ss_pred CCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe--------------------eCHhHHhcc
Q psy450 44 NLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL--------------------IRKQIQKLF 103 (478)
Q Consensus 44 ~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via--------------------ld~al~rRf 103 (478)
..+|+||||+|.+... ..+.++..|+.-...-.... ....-..++.||| +++|+++||
T Consensus 391 ~~gil~IDEid~l~~~-~q~~Ll~~le~~~i~i~~~g-~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RF 468 (595)
T 3f9v_A 391 DGGIAVIDEIDKMRDE-DRVAIHEAMEQQTVSIAKAG-IVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRF 468 (595)
T ss_dssp SSSEECCTTTTCCCSH-HHHHHHHHHHSSSEEEESSS-SEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGC
T ss_pred CCCcEEeehhhhCCHh-HhhhhHHHHhCCEEEEecCC-cEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhC
Confidence 4689999999998554 45667777764211000000 0011123445555 467999999
Q ss_pred c-cEEEeCCCCHHHHHHHHHHHHhhcCC-----CC------------------CCChhHHHHHHHh--------------
Q psy450 104 L-KTINVLPLTEPERRLLIQYQLDCLGG-----DY------------------GFDASLVEYLSSV-------------- 145 (478)
Q Consensus 104 ~-~~i~~~~P~~~~r~~il~~~~~~~~~-----~~------------------~~~~~~i~~la~~-------------- 145 (478)
| ..+..+.|+.+ ...|.+..+..... .+ ..+.+..+.+...
T Consensus 469 Dl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~ 547 (595)
T 3f9v_A 469 DLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDS 547 (595)
T ss_dssp SCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSS
T ss_pred eEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCc
Confidence 8 56677788888 88888877754210 00 0011111333332
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhh
Q psy450 146 TSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIYDDLQSR 191 (478)
Q Consensus 146 t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~~~~~~~ 191 (478)
+.+.|...+..+++.|...|..+ ....++.+|+..|+.-+..+
T Consensus 548 ~~~~s~R~l~~lirla~a~A~l~---~~~~V~~~dv~~Ai~l~~~s 590 (595)
T 3f9v_A 548 PILITPRQLEALIRISEAYAKMA---LKAEVTREDAERAINIMRLF 590 (595)
T ss_dssp CBCSSTTTTTHHHHHHHHHHHTT---SSCCSSHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHh---CcCCCCHHHHHHHHHHHHHH
Confidence 34778888888888887777544 56779999999998877654
No 210
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.25 E-value=0.00021 Score=62.16 Aligned_cols=29 Identities=34% Similarity=0.699 Sum_probs=25.7
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhCCcEE
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECRMNFL 263 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~~~~~ 263 (478)
..+.|+||+||||||+++.++..++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 45899999999999999999999987554
No 211
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.25 E-value=0.00023 Score=63.08 Aligned_cols=31 Identities=35% Similarity=0.584 Sum_probs=27.6
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLA 264 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~ 264 (478)
+..|+|.|+||+||||+++.+++.++.+++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 5568999999999999999999999887655
No 212
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.25 E-value=0.00022 Score=62.67 Aligned_cols=31 Identities=32% Similarity=0.679 Sum_probs=27.6
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLA 264 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~ 264 (478)
+..|+|+|+||+||||+++.+++.++.+++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 4569999999999999999999999887754
No 213
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.25 E-value=0.0002 Score=62.57 Aligned_cols=29 Identities=31% Similarity=0.593 Sum_probs=26.3
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEE
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLA 264 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~ 264 (478)
.++|.|+||+||||+++.+++.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 48999999999999999999999987654
No 214
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.22 E-value=0.00052 Score=67.23 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=27.8
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---------CCcEEEEech
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---------RMNFLAVKGP 268 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---------~~~~~~v~~~ 268 (478)
..-+.|+||||+|||++++.++... +..+++++..
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e 174 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 174 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC
Confidence 4557899999999999999999876 2355777653
No 215
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.22 E-value=0.00024 Score=62.63 Aligned_cols=29 Identities=31% Similarity=0.558 Sum_probs=26.5
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEE
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLA 264 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~ 264 (478)
.|+|.|+||+||||+++.+++.+|.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 48999999999999999999999988764
No 216
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.21 E-value=0.00084 Score=62.85 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=31.5
Q ss_pred CceEEEeCCCCChHHHHHHHHHHH---hCCcEEEEechhhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATE---CRMNFLAVKGPELL 271 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~---~~~~~~~v~~~~l~ 271 (478)
+.-|+|.|+||+||||+++.++.. .|.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 446899999999999999999998 68888767765554
No 217
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.19 E-value=0.0031 Score=65.68 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=35.2
Q ss_pred cCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHH
Q psy450 210 GGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVAT 256 (478)
Q Consensus 210 ~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~ 256 (478)
+|.+..++.|.+.+.... +...+.+.++|+.|+|||++|+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 499999999888775431 11256688999999999999999997
No 218
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.18 E-value=0.00035 Score=62.54 Aligned_cols=32 Identities=31% Similarity=0.506 Sum_probs=28.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAV 265 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v 265 (478)
+..|+|.|+||+||||+++.+++.++.+++..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 55699999999999999999999999876543
No 219
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.17 E-value=0.00017 Score=63.78 Aligned_cols=31 Identities=39% Similarity=0.603 Sum_probs=26.6
Q ss_pred CceEEEeCCCCChHHHHHHHHHHH-hCCcEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATE-CRMNFLA 264 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~-~~~~~~~ 264 (478)
+..|+|+|+|||||||+++.+++. +|.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 456999999999999999999998 6766644
No 220
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.14 E-value=0.0005 Score=59.97 Aligned_cols=20 Identities=40% Similarity=0.571 Sum_probs=17.2
Q ss_pred CceEEEeCCCCChHHHHHHH
Q psy450 234 RSGLLLYGPPGTGKTLIAKA 253 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~ 253 (478)
+.-+.|.||+|+||||++++
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 34578999999999999994
No 221
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.13 E-value=0.00038 Score=67.44 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=21.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATE 257 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~ 257 (478)
..-++++||||+|||+++..++..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 455889999999999999999875
No 222
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.13 E-value=0.0016 Score=60.00 Aligned_cols=36 Identities=31% Similarity=0.254 Sum_probs=29.1
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEech-hhh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVKGP-ELL 271 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~-~l~ 271 (478)
.++++||+|+|||.++..++...+.+++.+... ++.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~ 146 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHH
Confidence 489999999999999999998887777666543 443
No 223
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.11 E-value=0.00035 Score=60.70 Aligned_cols=29 Identities=21% Similarity=0.465 Sum_probs=26.2
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEE
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLA 264 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~ 264 (478)
.|+|.|+||+||||+++.+++.++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 48999999999999999999999987654
No 224
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.10 E-value=0.0003 Score=65.69 Aligned_cols=32 Identities=34% Similarity=0.462 Sum_probs=28.7
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEec
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVKG 267 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~ 267 (478)
.+++.||||+||||+|+.+|+.++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999998877664
No 225
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.09 E-value=0.00039 Score=61.58 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=29.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL 271 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~ 271 (478)
+..|+|.|+||+||||+++.+++.++.+++ +..++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~~ 38 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL--SAGELL 38 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHHH
Confidence 456899999999999999999999987654 444443
No 226
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.07 E-value=0.00036 Score=60.47 Aligned_cols=29 Identities=31% Similarity=0.520 Sum_probs=25.3
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEE
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAV 265 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v 265 (478)
-|+|.||||+||||+++.+ +.+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8888886653
No 227
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.07 E-value=0.00034 Score=61.64 Aligned_cols=30 Identities=33% Similarity=0.568 Sum_probs=26.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFL 263 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~ 263 (478)
+..|+|.|+||+||||+++.+++.++.+++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 345899999999999999999999987654
No 228
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.06 E-value=0.0014 Score=60.31 Aligned_cols=34 Identities=32% Similarity=0.343 Sum_probs=26.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~ 267 (478)
...++++||||+|||+++..++... +.++++++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4458899999999999988886543 566777664
No 229
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.06 E-value=0.00043 Score=62.01 Aligned_cols=31 Identities=26% Similarity=0.650 Sum_probs=27.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLA 264 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~ 264 (478)
+..|+|.|++|+||||+++.+++.++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4569999999999999999999999877654
No 230
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.05 E-value=0.0017 Score=63.38 Aligned_cols=102 Identities=9% Similarity=0.029 Sum_probs=69.2
Q ss_pred CCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe-----eCHhHHhccccEEEeCCCCHHHHH
Q psy450 44 NLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL-----IRKQIQKLFLKTINVLPLTEPERR 118 (478)
Q Consensus 44 ~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via-----ld~al~rRf~~~i~~~~P~~~~r~ 118 (478)
+|.|++|||++++ .....+.++..++.. ..+..+++++ +.+++++|+ ..+.|+.|+.++..
T Consensus 134 ~~~vlilDE~~~L-~~~~~~~L~~~le~~------------~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~ 199 (354)
T 1sxj_E 134 RYKCVIINEANSL-TKDAQAALRRTMEKY------------SKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEIS 199 (354)
T ss_dssp CCEEEEEECTTSS-CHHHHHHHHHHHHHS------------TTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHH
T ss_pred CCeEEEEeCcccc-CHHHHHHHHHHHHhh------------cCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHH
Confidence 5779999999994 444456666666632 1222344444 889999999 88999999999999
Q ss_pred HHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHH
Q psy450 119 LLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLS 161 (478)
Q Consensus 119 ~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a 161 (478)
++++..+...+..+.. .+.++.++..+.| +..++..+++.+
T Consensus 200 ~~l~~~~~~~~~~~~~-~~~l~~i~~~~~G-~~r~a~~~l~~~ 240 (354)
T 1sxj_E 200 TILSDVVTNERIQLET-KDILKRIAQASNG-NLRVSLLMLESM 240 (354)
T ss_dssp HHHHHHHHHHTCEECC-SHHHHHHHHHHTT-CHHHHHHHHTHH
T ss_pred HHHHHHHHHcCCCCCc-HHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 9999998765322221 3445888888765 334444444433
No 231
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.04 E-value=0.00034 Score=61.94 Aligned_cols=37 Identities=35% Similarity=0.451 Sum_probs=30.7
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPEL 270 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l 270 (478)
+..+.|.||||+||||+++.++...+...+.++..++
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 4568899999999999999999887777777776554
No 232
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.04 E-value=0.0003 Score=61.77 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=23.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFL 263 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~ 263 (478)
+..|+|.|+||+||||+++.+++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999998876
No 233
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.03 E-value=0.00044 Score=61.36 Aligned_cols=32 Identities=19% Similarity=0.391 Sum_probs=27.6
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAV 265 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v 265 (478)
+..|+|.|+||+||||+++.+++.++.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45689999999999999999999999876543
No 234
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.03 E-value=0.0028 Score=60.94 Aligned_cols=118 Identities=11% Similarity=0.112 Sum_probs=76.2
Q ss_pred cCCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe-----eCHhHHhccccEEEeCCCCHHHH
Q psy450 43 YNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL-----IRKQIQKLFLKTINVLPLTEPER 117 (478)
Q Consensus 43 ~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via-----ld~al~rRf~~~i~~~~P~~~~r 117 (478)
..+.|+||||+|.+... ..+.++..++.. ..+..+++++ +++++.+|+. .+.|+.|+.++.
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~------------~~~~~~i~~~~~~~~l~~~l~sr~~-~~~~~~l~~~~~ 174 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMF------------SSNVRFILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDI 174 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHT------------TTTEEEEEEESCGGGSCHHHHHTEE-EEECCCCCHHHH
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhc------------CCCCeEEEEeCCccccCHHHHhhCc-EEEecCCCHHHH
Confidence 45889999999998643 345566666631 1111233333 8899999996 799999999999
Q ss_pred HHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q psy450 118 RLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKEDFQQIY 185 (478)
Q Consensus 118 ~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d~~~a~ 185 (478)
.++++..+... ....+.+.++.++..+.| +...+.++++.+.. ....++.+++....
T Consensus 175 ~~~l~~~~~~~--~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~--------~~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 175 AKRLRYIAENE--GLELTEEGLQAILYIAEG-DMRRAINILQAAAA--------LDKKITDENVFMVA 231 (327)
T ss_dssp HHHHHHHHHTT--TCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHT--------TCSEECHHHHHHHT
T ss_pred HHHHHHHHHhc--CCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHh--------cCCCCCHHHHHHHH
Confidence 99999988765 333455556888888765 33444444443321 12356766665443
No 235
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.02 E-value=0.00066 Score=59.50 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=31.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPEL 270 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l 270 (478)
+..+.|.|++|+||||+++.++..+ |.+++.++...+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 4568899999999999999999988 888888875433
No 236
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.01 E-value=0.00051 Score=62.47 Aligned_cols=31 Identities=32% Similarity=0.516 Sum_probs=27.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLA 264 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~ 264 (478)
+..|+|.|+||+||||+++.+++.++.+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 4568999999999999999999999976654
No 237
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.01 E-value=0.00035 Score=61.09 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=25.7
Q ss_pred ceEEEeCCCCChHHHHHHHHHH-HhCCcEEEEechhh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVAT-ECRMNFLAVKGPEL 270 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~-~~~~~~~~v~~~~l 270 (478)
.-|+|.|+||+||||+++.+++ .++ +..++...+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~d~~ 37 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDY 37 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCC--cEEecHHHH
Confidence 4589999999999999999998 454 444444333
No 238
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.00 E-value=0.00052 Score=59.31 Aligned_cols=29 Identities=17% Similarity=0.317 Sum_probs=26.2
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEE
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLA 264 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~ 264 (478)
.|+|.|+||+||||+++.+++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 38899999999999999999999987764
No 239
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.99 E-value=0.00043 Score=61.11 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=23.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
..|+|.|+||+||||+++.+++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999999887
No 240
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.99 E-value=0.0022 Score=65.57 Aligned_cols=75 Identities=17% Similarity=0.313 Sum_probs=48.1
Q ss_pred Ce-EEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCCC--CCCccccCCCCCCeEEEeCCC
Q psy450 294 PC-VVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD--LLDPAILRPGRLDKSLYVGLY 370 (478)
Q Consensus 294 p~-il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~~--~ld~~l~~~~Rf~~~i~~~~p 370 (478)
|. +++|||+..+.... .......+..+... ...-++.+|.+|.+|. .++..++. .|...|.+..
T Consensus 297 P~ivlvIDE~~~ll~~~------~~~~~~~l~~Lar~----gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv- 363 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV------GKKVEELIARLAQK----ARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTV- 363 (512)
T ss_dssp CEEEEEEETHHHHHHHH------HHHHHHHHHHHHHH----CGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECC-
T ss_pred CcEEEEEeCHHHHHhhh------hHHHHHHHHHHHHH----hhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEc-
Confidence 54 88999998776310 11112222222221 1233688889999987 57887887 8888999988
Q ss_pred CCHHHHHHHHH
Q psy450 371 EDRISQLGVLK 381 (478)
Q Consensus 371 p~~~~r~~il~ 381 (478)
.+..+...|+.
T Consensus 364 ~s~~dsr~ilg 374 (512)
T 2ius_A 364 SSKIDSRTILD 374 (512)
T ss_dssp SSHHHHHHHHS
T ss_pred CCHHHHHHhcC
Confidence 67777766663
No 241
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.99 E-value=0.00051 Score=61.10 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=26.7
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLA 264 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~ 264 (478)
+.-|+|.|+||+||||+++.+++.++.+++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 4458999999999999999999999866544
No 242
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.99 E-value=0.00051 Score=62.16 Aligned_cols=30 Identities=23% Similarity=0.506 Sum_probs=26.4
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEE
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAV 265 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v 265 (478)
.|+|.||||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999998876544
No 243
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.99 E-value=0.00049 Score=62.34 Aligned_cols=30 Identities=23% Similarity=0.489 Sum_probs=26.3
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEE
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAV 265 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v 265 (478)
.|+|.||||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 388999999999999999999998776554
No 244
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.98 E-value=0.00068 Score=66.46 Aligned_cols=69 Identities=17% Similarity=0.315 Sum_probs=44.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh----CCcEEEEec-hhhhh--------h-hhcchHHHHHHHHHHhHhCCCeEEEEc
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC----RMNFLAVKG-PELLN--------K-YIGQSEENIRNVFLKARSAAPCVVFFD 300 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~----~~~~~~v~~-~~l~~--------~-~~g~~~~~~~~~~~~a~~~~p~il~iD 300 (478)
..+++.||+|+||||++++++..+ +..++.+.. .++.. + ..+.....+...+..+....|.+|++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 358899999999999999998765 234433321 11100 0 011111234457777888899999999
Q ss_pred CCc
Q psy450 301 ELD 303 (478)
Q Consensus 301 eid 303 (478)
|.-
T Consensus 204 Ep~ 206 (356)
T 3jvv_A 204 EMR 206 (356)
T ss_dssp CCC
T ss_pred CCC
Confidence 963
No 245
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.97 E-value=0.00071 Score=58.96 Aligned_cols=30 Identities=33% Similarity=0.521 Sum_probs=25.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFL 263 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~ 263 (478)
+..++|.||+|+||||+++.++..+|..++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 456899999999999999999998876554
No 246
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.96 E-value=0.00054 Score=60.54 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=26.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLA 264 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~ 264 (478)
+..|+|.|+|||||||+++.+++.++.+++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~ 36 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEee
Confidence 4568999999999999999999999876554
No 247
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.96 E-value=0.0011 Score=61.42 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=27.8
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAV 265 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v 265 (478)
+..|+|.||||+||||+++.+++.++.+++..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 66799999999999999999999998765543
No 248
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.95 E-value=0.00061 Score=62.62 Aligned_cols=31 Identities=35% Similarity=0.493 Sum_probs=27.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLA 264 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~ 264 (478)
+..|+|.|+||+||||+++.+++.++.+++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4569999999999999999999999976654
No 249
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.95 E-value=0.0042 Score=62.27 Aligned_cols=72 Identities=17% Similarity=0.047 Sum_probs=46.8
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhh----------hhhh---------c-chHHHHHHHHHHhH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELL----------NKYI---------G-QSEENIRNVFLKAR 290 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~----------~~~~---------g-~~~~~~~~~~~~a~ 290 (478)
+.-+++.||+|+||||++..+|..+ |..+..+++..+. .... + .........+..+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 5678899999999999999998766 6666666543111 0000 1 12222345566666
Q ss_pred hCCCeEEEEcCCccc
Q psy450 291 SAAPCVVFFDELDSL 305 (478)
Q Consensus 291 ~~~p~il~iDeid~l 305 (478)
...+.++++|....+
T Consensus 177 ~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTCSEEEEEECCCS
T ss_pred hcCCCEEEEECCCCc
Confidence 667889999987543
No 250
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.94 E-value=0.00061 Score=61.88 Aligned_cols=37 Identities=22% Similarity=0.447 Sum_probs=30.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN 272 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~ 272 (478)
++-|+|.||||+||+|.|+.|++.++.+ +++..+++.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdllR 65 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLLR 65 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHHH
Confidence 6678899999999999999999999865 455555553
No 251
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.93 E-value=0.0006 Score=61.45 Aligned_cols=33 Identities=36% Similarity=0.614 Sum_probs=27.6
Q ss_pred EEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh
Q psy450 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL 271 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~ 271 (478)
|+|.||||+||+|.|+.|++.++.+. ++..+++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 78999999999999999999998765 5555554
No 252
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.93 E-value=0.00057 Score=62.51 Aligned_cols=31 Identities=23% Similarity=0.500 Sum_probs=27.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLA 264 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~ 264 (478)
+..|+|.|+||+||||+++.+++.++.+++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 4569999999999999999999999876654
No 253
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.91 E-value=0.00095 Score=59.70 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=29.5
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPEL 270 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l 270 (478)
+..+.|.||+|+||||+++.++..+ |...+.++...+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 5568899999999999999999988 555456665444
No 254
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.91 E-value=0.00077 Score=60.28 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=27.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAV 265 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v 265 (478)
+..|+|.|+|||||||+++.+++.++.+++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 45689999999999999999999998765543
No 255
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.88 E-value=0.00034 Score=67.94 Aligned_cols=52 Identities=23% Similarity=0.404 Sum_probs=35.5
Q ss_pred CcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCCcEEE
Q psy450 211 GLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLA 264 (478)
Q Consensus 211 g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~ 264 (478)
.++...+.+...+...... |. ..+++|.|++|+|||+++++++..++.+|+.
T Consensus 3 ~~~~L~~~il~~l~~~i~~-g~-~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIED-NY-RVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTT-CS-CEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcc-CC-eeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 4455555555444433221 21 3469999999999999999999999877643
No 256
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.87 E-value=0.0008 Score=60.20 Aligned_cols=35 Identities=31% Similarity=0.543 Sum_probs=27.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPEL 270 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l 270 (478)
+..+.|.||+|+||||+++.++..+|..+ ++..++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 45688999999999999999999997644 444443
No 257
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.85 E-value=0.00077 Score=61.20 Aligned_cols=32 Identities=28% Similarity=0.552 Sum_probs=27.5
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAV 265 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v 265 (478)
+..|+|.|+||+||||+++.+++.++.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 34589999999999999999999999776543
No 258
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.84 E-value=0.00057 Score=62.21 Aligned_cols=31 Identities=16% Similarity=0.405 Sum_probs=26.8
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLA 264 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~ 264 (478)
+..|+|.|+||+||||+++.+++.++..++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4569999999999999999999999975543
No 259
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.83 E-value=0.00097 Score=58.94 Aligned_cols=30 Identities=23% Similarity=0.180 Sum_probs=27.2
Q ss_pred EEEeCCCCChHHHHHHHHHHHh---CCcEEEEe
Q psy450 237 LLLYGPPGTGKTLIAKAVATEC---RMNFLAVK 266 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~ 266 (478)
|.|.|++|+||||+++.+++.+ |.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999988 88887765
No 260
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.81 E-value=0.00093 Score=60.83 Aligned_cols=30 Identities=30% Similarity=0.517 Sum_probs=26.2
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhCCcEEE
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECRMNFLA 264 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~~~~~~ 264 (478)
..+.|.||+||||||+++.++..++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 358899999999999999999999876643
No 261
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.81 E-value=0.00078 Score=64.77 Aligned_cols=34 Identities=29% Similarity=0.496 Sum_probs=30.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~ 267 (478)
+..++|.||+|+|||++++.+|+.++..++.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 3468999999999999999999999988888764
No 262
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.81 E-value=0.00085 Score=59.22 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=27.3
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhC---CcEEEEechhh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECR---MNFLAVKGPEL 270 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~---~~~~~v~~~~l 270 (478)
.|+|.|+||+||||+++.+++.++ .++..++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 488999999999999999999885 33555554443
No 263
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.78 E-value=0.00086 Score=60.67 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=26.3
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEE
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAV 265 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v 265 (478)
.|+|.|+||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 389999999999999999999998776554
No 264
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.78 E-value=0.0009 Score=58.43 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=42.9
Q ss_pred hhhhHHHHhhhhc-CCCeEEEecccccccch--------hhHhhhccccccccccccchhhhccCCCcEEEEe-------
Q psy450 31 HLNDIVKINLKKY-NLDIFKYDEVNYLCNVK--------YVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL------- 94 (478)
Q Consensus 31 ~~~~if~~~a~~~-~p~ilfiDe~d~i~~~r--------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via------- 94 (478)
.++.+|. .+... .|+||||||+|.+.+.+ ..+.+...++ ...+.+|+
T Consensus 102 ~~~~~~~-~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~----------------~~~~~ii~~~~~~~~ 164 (187)
T 2p65_A 102 RLKSILK-EVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLA----------------RGELRCIGATTVSEY 164 (187)
T ss_dssp HHHHHHH-HHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHH----------------TTCSCEEEEECHHHH
T ss_pred HHHHHHH-HHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHh----------------cCCeeEEEecCHHHH
Confidence 5677776 55554 78999999999997432 1222222122 23344444
Q ss_pred -----eCHhHHhccccEEEeCCCC
Q psy450 95 -----IRKQIQKLFLKTINVLPLT 113 (478)
Q Consensus 95 -----ld~al~rRf~~~i~~~~P~ 113 (478)
+|++++|||+. ++++.|+
T Consensus 165 ~~~~~~~~~l~~R~~~-i~i~~p~ 187 (187)
T 2p65_A 165 RQFIEKDKALERRFQQ-ILVEQPS 187 (187)
T ss_dssp HHHTTTCHHHHHHEEE-EECCSCC
T ss_pred HHHHhccHHHHHhcCc-ccCCCCC
Confidence 68999999984 9999996
No 265
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.77 E-value=0.0037 Score=59.00 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
..-++|+||+|+|||+++..++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4458899999999999999998644
No 266
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.74 E-value=0.001 Score=60.70 Aligned_cols=34 Identities=21% Similarity=0.538 Sum_probs=27.3
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL 271 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~ 271 (478)
.|+|.|+||+||||+++.+++.++.+++ +..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i--~~dd~~ 35 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHI--ESGGIF 35 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE--chHHHH
Confidence 3789999999999999999999987554 443443
No 267
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.74 E-value=0.0012 Score=58.49 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=26.2
Q ss_pred EEEeCCCCChHHHHHHHHHHHh---CCcEEEEe
Q psy450 237 LLLYGPPGTGKTLIAKAVATEC---RMNFLAVK 266 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~ 266 (478)
|.|.|++||||||+++.+++.+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999998 88887654
No 268
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.74 E-value=0.00096 Score=59.49 Aligned_cols=29 Identities=17% Similarity=0.478 Sum_probs=25.9
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEE
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLA 264 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~ 264 (478)
.|.|.|++|+||||+++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999987654
No 269
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.73 E-value=0.0032 Score=60.33 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=45.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhh-------hh------------h-cchHHHHHHHHHHhH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLN-------KY------------I-GQSEENIRNVFLKAR 290 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~-------~~------------~-g~~~~~~~~~~~~a~ 290 (478)
+.-+++.||+|+||||++..+|..+ +..+..+++..+.. .+ . +.........+..+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~ 183 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHAL 183 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHH
Confidence 5568899999999999999999766 55565555422110 00 0 112222234455556
Q ss_pred hCCCeEEEEcCCc
Q psy450 291 SAAPCVVFFDELD 303 (478)
Q Consensus 291 ~~~p~il~iDeid 303 (478)
...|.++++|+.-
T Consensus 184 ~~~~dvvIiDtpg 196 (306)
T 1vma_A 184 ARNKDVVIIDTAG 196 (306)
T ss_dssp HTTCSEEEEEECC
T ss_pred hcCCCEEEEECCC
Confidence 6788899999864
No 270
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.72 E-value=0.00083 Score=62.93 Aligned_cols=69 Identities=19% Similarity=0.390 Sum_probs=42.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC----CcEEEEechhh--hhh---------hhcchHHHHHHHHHHhHhCCCeEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR----MNFLAVKGPEL--LNK---------YIGQSEENIRNVFLKARSAAPCVVF 298 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~----~~~~~v~~~~l--~~~---------~~g~~~~~~~~~~~~a~~~~p~il~ 298 (478)
...+++.||+|+||||++++++..+. ..+.... ..+ ... ..|.....++..+..+....|.+|+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g-~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~ill 103 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE-DPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 103 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC-CcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEE
Confidence 44588999999999999999987652 2232221 111 000 0011112345566666667899999
Q ss_pred EcCCc
Q psy450 299 FDELD 303 (478)
Q Consensus 299 iDeid 303 (478)
+||.-
T Consensus 104 lDEp~ 108 (261)
T 2eyu_A 104 VGEMR 108 (261)
T ss_dssp ESCCC
T ss_pred eCCCC
Confidence 99963
No 271
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.71 E-value=0.0012 Score=60.47 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=26.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLA 264 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~ 264 (478)
+..+.|.||||+||||+++.+++.++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4568999999999999999999999876643
No 272
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.70 E-value=0.0016 Score=60.00 Aligned_cols=34 Identities=29% Similarity=0.226 Sum_probs=26.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHH----hCCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATE----CRMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~----~~~~~~~v~~ 267 (478)
..-++++|+||+|||++|..++.. .+.++++++.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 445889999999999999887543 3667777664
No 273
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.67 E-value=0.0012 Score=59.03 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=28.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh-CCcEEEEe
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC-RMNFLAVK 266 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~-~~~~~~v~ 266 (478)
+..|.|.|++|+||||+++.+++.+ |.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4568999999999999999999998 57777665
No 274
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.65 E-value=0.0012 Score=61.26 Aligned_cols=31 Identities=29% Similarity=0.466 Sum_probs=27.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhCCcEEEE
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECRMNFLAV 265 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v 265 (478)
..+.|.|++|+||||+++.++..++.+++..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 4599999999999999999999999877653
No 275
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.65 E-value=0.0013 Score=60.82 Aligned_cols=30 Identities=27% Similarity=0.577 Sum_probs=26.5
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFL 263 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~ 263 (478)
+..+.|.||+|+||||+++.+++.+|....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 567999999999999999999999987543
No 276
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.64 E-value=0.0012 Score=59.14 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=24.9
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEE
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAV 265 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v 265 (478)
.|.|.|++||||||+++.++. +|.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 488999999999999999999 88766543
No 277
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.63 E-value=0.016 Score=58.84 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=27.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh----CCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC----RMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~----~~~~~~v~~ 267 (478)
+.-+++.|+||+|||+++..++... |.++++++.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 4458899999999999999987654 557777764
No 278
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.63 E-value=0.0075 Score=58.04 Aligned_cols=37 Identities=27% Similarity=0.188 Sum_probs=28.3
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEec
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKG 267 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~ 267 (478)
|.. ..-+++.|+||+|||+++..+|... +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 444 4458899999999999999998654 457777764
No 279
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.58 E-value=0.0016 Score=57.94 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=28.3
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhhh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLN 272 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~~ 272 (478)
.|.|+|++||||||+++.+++.+|.+++. +..+..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid--~D~~~~ 48 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN--VDRIGH 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE--HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE--CcHHHH
Confidence 37899999999999999999988877654 444443
No 280
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.58 E-value=0.0016 Score=58.27 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=26.8
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEE
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAV 265 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v 265 (478)
.+.|.|++|+||||+++.+++.+|.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 588999999999999999999999877653
No 281
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.57 E-value=0.0079 Score=63.37 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=20.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.+.++++|+||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3458999999999999988776544
No 282
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.55 E-value=0.0099 Score=56.60 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=27.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh----CCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC----RMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~----~~~~~~v~~ 267 (478)
+..+++.||+|+||||++..+|..+ |..+..++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 5568899999999999999998755 556666664
No 283
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.54 E-value=0.0014 Score=58.80 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=26.0
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPEL 270 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l 270 (478)
.+.|.||+|+||||+++.++. +|.+++ +...+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~ 35 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVV 35 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc--chHHH
Confidence 478999999999999999987 787765 44444
No 284
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.54 E-value=0.0052 Score=54.90 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=27.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~ 267 (478)
+.-+.+.|++|+||||+++.++..+ +.++...+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 4568899999999999999999876 556665543
No 285
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.51 E-value=0.003 Score=55.53 Aligned_cols=37 Identities=30% Similarity=0.300 Sum_probs=28.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPEL 270 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l 270 (478)
+..++|.|++|+||||+++.++..+ +.++..++...+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 5568899999999999999999887 344556665433
No 286
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.49 E-value=0.0026 Score=59.11 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=31.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCc--------EEEEechhhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMN--------FLAVKGPELL 271 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~--------~~~v~~~~l~ 271 (478)
+..|.|.|++|+||||+++.+++.++.+ +..++..++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 5568999999999999999999999876 3456666554
No 287
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.48 E-value=0.0017 Score=58.24 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=26.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCc--EEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMN--FLAV 265 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~--~~~v 265 (478)
+.-|+|.|+||+||||+++.+++.++.. ++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 4458999999999999999999998763 5443
No 288
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.44 E-value=0.024 Score=59.68 Aligned_cols=141 Identities=17% Similarity=0.134 Sum_probs=83.4
Q ss_pred cCCCeEEEecccccccchhhHhhhccccccccccccch----hh---hccCCCcEEEEe---------eCHhHHhccc--
Q psy450 43 YNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETK----DQ---QCKQQHKKKLVL---------IRKQIQKLFL-- 104 (478)
Q Consensus 43 ~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~----~~---~~~~~~~v~via---------ld~al~rRf~-- 104 (478)
..+.+|||||++.+- ....+.++..|+.-........ .. ...-...+.||+ +||++++||+
T Consensus 200 a~~gvL~LDEi~~l~-~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~l~~R~~v~ 278 (604)
T 3k1j_A 200 AHKGVLFIDEIATLS-LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRSRIRGY 278 (604)
T ss_dssp TTTSEEEETTGGGSC-HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHHHHHHHHHH
T ss_pred cCCCEEEEechhhCC-HHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCHHHHHHhhcc
Confidence 467899999999973 4455666666663211110000 00 000012344444 8999999996
Q ss_pred -cEEEeCC--C-CHHHHHHHHHHHHhhcC---CCCCCChhHHHHHHHhc---CCC------CHHHHHHHHHHHHHHHHHh
Q psy450 105 -KTINVLP--L-TEPERRLLIQYQLDCLG---GDYGFDASLVEYLSSVT---SGF------ERHDLTCLVRLSVKNKMLK 168 (478)
Q Consensus 105 -~~i~~~~--P-~~~~r~~il~~~~~~~~---~~~~~~~~~i~~la~~t---~G~------s~~di~~l~~~a~~~a~~~ 168 (478)
..+.++. | ..+....+++.+..... .....+.+.+..|.+.. .|- +..++.++++.|...+..+
T Consensus 279 ~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~ 358 (604)
T 3k1j_A 279 GYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKK 358 (604)
T ss_dssp SEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHT
T ss_pred ceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhc
Confidence 4555543 2 35566777665554321 12234444446666533 553 7899999999987666433
Q ss_pred hcCCCCCCCHHHHHHHHHH
Q psy450 169 QGINKRDLQKEDFQQIYDD 187 (478)
Q Consensus 169 ~~~~~~~it~~d~~~a~~~ 187 (478)
....|+.+|+..|+..
T Consensus 359 ---~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 359 ---GKKYVEREDVIEAVKM 374 (604)
T ss_dssp ---TCSSBCHHHHHHHHHH
T ss_pred ---CcccccHHHHHHHHHh
Confidence 5667999999998854
No 289
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.43 E-value=0.00079 Score=60.56 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=24.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCc
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMN 261 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~ 261 (478)
+.-|+|.|+||+||||+++.+++.++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 5568999999999999999999987543
No 290
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.43 E-value=0.0034 Score=61.80 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=20.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.-+.|.||+||||||++++|+...
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 347799999999999999999755
No 291
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.40 E-value=0.0023 Score=56.92 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=28.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL 271 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~ 271 (478)
+..|.|.|++||||||+++.+++. |.+++ +...+.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~~ 42 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDALA 42 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHHH
Confidence 556899999999999999999998 76665 444443
No 292
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.39 E-value=0.0023 Score=63.13 Aligned_cols=70 Identities=20% Similarity=0.421 Sum_probs=43.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC----CcEEEEech-hhh--h--hhhcc-----hHHHHHHHHHHhHhCCCeEEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR----MNFLAVKGP-ELL--N--KYIGQ-----SEENIRNVFLKARSAAPCVVFF 299 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~----~~~~~v~~~-~l~--~--~~~g~-----~~~~~~~~~~~a~~~~p~il~i 299 (478)
...+++.||+|+||||++++++..+. ..++.+..+ ++. . .++.+ ....+...+..+....|.+|++
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~ill 215 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFV 215 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEEE
Confidence 44588999999999999999988652 333333311 100 0 00111 1122345566666678999999
Q ss_pred cCCc
Q psy450 300 DELD 303 (478)
Q Consensus 300 Deid 303 (478)
||+-
T Consensus 216 dE~~ 219 (372)
T 2ewv_A 216 GEMR 219 (372)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9973
No 293
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.39 E-value=0.0015 Score=62.98 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=30.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEech
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGP 268 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~ 268 (478)
+..|+|.||+|+|||+++..||+.++..++..+.-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 45689999999999999999999999888776654
No 294
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.37 E-value=0.002 Score=61.39 Aligned_cols=34 Identities=24% Similarity=0.469 Sum_probs=29.5
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~ 267 (478)
+.-+++.||+|+|||+++..+|+.++..++..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 4568899999999999999999999887777654
No 295
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.36 E-value=0.0028 Score=58.98 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=26.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFL 263 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~ 263 (478)
...+.|.||+|+||||+++.+++.+|..++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 345889999999999999999999997654
No 296
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.34 E-value=0.014 Score=56.61 Aligned_cols=106 Identities=7% Similarity=0.081 Sum_probs=70.1
Q ss_pred hhhhhHHHHhhhh----cCCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe------eCHhH
Q psy450 30 HHLNDIVKINLKK----YNLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL------IRKQI 99 (478)
Q Consensus 30 ~~~~~if~~~a~~----~~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via------ld~al 99 (478)
..+|.+++ .+.. ....|++|||+|.+-.. ..|.++..++. .+.+.++|+. +.|.+
T Consensus 91 ~~ir~l~~-~~~~~~~~~~~kvviIdead~l~~~-a~naLLk~lEe-------------p~~~~~~Il~t~~~~~l~~ti 155 (334)
T 1a5t_A 91 DAVREVTE-KLNEHARLGGAKVVWVTDAALLTDA-AANALLKTLEE-------------PPAETWFFLATREPERLLATL 155 (334)
T ss_dssp HHHHHHHH-HTTSCCTTSSCEEEEESCGGGBCHH-HHHHHHHHHTS-------------CCTTEEEEEEESCGGGSCHHH
T ss_pred HHHHHHHH-HHhhccccCCcEEEEECchhhcCHH-HHHHHHHHhcC-------------CCCCeEEEEEeCChHhCcHHH
Confidence 35677776 5542 34689999999998643 46778877773 1122233333 89999
Q ss_pred HhccccEEEeCCCCHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHhcCCCCHHHHHHHHH
Q psy450 100 QKLFLKTINVLPLTEPERRLLIQYQLDCLGGDYGFDASLVEYLSSVTSGFERHDLTCLVR 159 (478)
Q Consensus 100 ~rRf~~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~i~~la~~t~G~s~~di~~l~~ 159 (478)
++|. ..++|+.|+.++..++++... ..+.+.++.++..+.| +......+++
T Consensus 156 ~SRc-~~~~~~~~~~~~~~~~L~~~~-------~~~~~~~~~l~~~s~G-~~r~a~~~l~ 206 (334)
T 1a5t_A 156 RSRC-RLHYLAPPPEQYAVTWLSREV-------TMSQDALLAALRLSAG-SPGAALALFQ 206 (334)
T ss_dssp HTTS-EEEECCCCCHHHHHHHHHHHC-------CCCHHHHHHHHHHTTT-CHHHHHHTTS
T ss_pred hhcc-eeeeCCCCCHHHHHHHHHHhc-------CCCHHHHHHHHHHcCC-CHHHHHHHhc
Confidence 9998 579999999999888887654 1233444778877765 3333433333
No 297
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.33 E-value=0.0021 Score=62.32 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=45.6
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCC--cEEEEechhhhh-----h---hhcchHHHHHHHHHHhHhCCCeEEEEcCCc
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRM--NFLAVKGPELLN-----K---YIGQSEENIRNVFLKARSAAPCVVFFDELD 303 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~--~~~~v~~~~l~~-----~---~~g~~~~~~~~~~~~a~~~~p~il~iDeid 303 (478)
...+++.||+|+||||++++++..... ..+.++...... . +........+..+..+....|.+|++||.-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 345999999999999999999987632 344444321100 0 110012234556677777889999999964
No 298
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.32 E-value=0.038 Score=56.46 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=27.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~ 267 (478)
+..|+++|++|+||||++..+|..+ |..+..+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 5678999999999999999999766 666766665
No 299
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.31 E-value=0.023 Score=57.40 Aligned_cols=37 Identities=22% Similarity=0.151 Sum_probs=28.4
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh----CCcEEEEec
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC----RMNFLAVKG 267 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~----~~~~~~v~~ 267 (478)
|.. +.-+++.|+||+|||+++..+|... +.++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 444 4457899999999999999887643 567777765
No 300
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.31 E-value=0.016 Score=61.65 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=42.1
Q ss_pred cCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhhhhhcchHHHHHHHH
Q psy450 210 GGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLNKYIGQSEENIRNVF 286 (478)
Q Consensus 210 ~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~~~~g~~~~~~~~~~ 286 (478)
.-.+++++.+..++.. ..-.|++||||||||+++-.+...+ +.+++.+..+ ...+..+.
T Consensus 189 ~LN~~Q~~AV~~al~~--------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T----------N~AvD~i~ 250 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQ--------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS----------NIAVDNLV 250 (646)
T ss_dssp TCCHHHHHHHHHHHHC--------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS----------HHHHHHHH
T ss_pred CCCHHHHHHHHHHhcC--------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc----------hHHHHHHH
Confidence 3467777777766532 1237899999999998655544333 5566555543 33444555
Q ss_pred HHhHhCCCeEEEE
Q psy450 287 LKARSAAPCVVFF 299 (478)
Q Consensus 287 ~~a~~~~p~il~i 299 (478)
.+.......++-+
T Consensus 251 erL~~~~~~ilRl 263 (646)
T 4b3f_X 251 ERLALCKQRILRL 263 (646)
T ss_dssp HHHHHTTCCEEEC
T ss_pred HHHHhcCCceEEe
Confidence 5544444445443
No 301
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.29 E-value=0.0011 Score=59.64 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=23.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
+..|+|.|++|+||||+++.+++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999864
No 302
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.27 E-value=0.02 Score=61.99 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=18.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHHH
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATE 257 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~ 257 (478)
..+++.||+|+|||+++..+...
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999977776543
No 303
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.25 E-value=0.0032 Score=56.91 Aligned_cols=30 Identities=33% Similarity=0.435 Sum_probs=25.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLA 264 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~ 264 (478)
+.-|.|.|++|+||||+++.++. +|.+++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 34588999999999999999998 7776544
No 304
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.25 E-value=0.0034 Score=56.72 Aligned_cols=31 Identities=39% Similarity=0.567 Sum_probs=26.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLA 264 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~ 264 (478)
+..+.|.|++|||||++++.++..+|.+++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 3458999999999999999999999977654
No 305
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.24 E-value=0.0024 Score=57.21 Aligned_cols=26 Identities=35% Similarity=0.546 Sum_probs=23.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
+.-++|.||||+||||+++.++..++
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45689999999999999999999875
No 306
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.21 E-value=0.0038 Score=55.10 Aligned_cols=28 Identities=32% Similarity=0.584 Sum_probs=23.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhCCcE
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECRMNF 262 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~~~~ 262 (478)
+.|+|.||+|+|||++++.+.......+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 3489999999999999999988765433
No 307
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.21 E-value=0.0028 Score=60.40 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=28.8
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEech
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGP 268 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~ 268 (478)
+.-+++.||+|+|||+++..+|+.++..++..+.-
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 34578999999999999999999998777665543
No 308
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.21 E-value=0.0039 Score=56.03 Aligned_cols=26 Identities=31% Similarity=0.563 Sum_probs=23.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
+.-+.|.||+|+||||+++.|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 55678999999999999999998875
No 309
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.20 E-value=0.0036 Score=55.42 Aligned_cols=70 Identities=19% Similarity=0.162 Sum_probs=41.5
Q ss_pred CceEEEeCCCCChHH-HHHHHHHHHh--CCcEEEEech---hhhhhh---hcc-----hHHHHHHHHHHhHhCCCeEEEE
Q psy450 234 RSGLLLYGPPGTGKT-LIAKAVATEC--RMNFLAVKGP---ELLNKY---IGQ-----SEENIRNVFLKARSAAPCVVFF 299 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT-~la~~la~~~--~~~~~~v~~~---~l~~~~---~g~-----~~~~~~~~~~~a~~~~p~il~i 299 (478)
..-.+++||.|+||| +|.+++.+.. +..++.++.. .+.... .|. ......+++...+ ...+|+|
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlI 97 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGI 97 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEE
Confidence 344788999999999 8888887644 6777777643 111100 000 0011122333322 3469999
Q ss_pred cCCccc
Q psy450 300 DELDSL 305 (478)
Q Consensus 300 Deid~l 305 (478)
||++-+
T Consensus 98 DEaQFf 103 (195)
T 1w4r_A 98 DEGQFF 103 (195)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999988
No 310
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.15 E-value=0.0041 Score=57.09 Aligned_cols=31 Identities=26% Similarity=0.542 Sum_probs=27.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLA 264 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~ 264 (478)
+..+.|.|++|+|||++++.++..+|.+++.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 4468899999999999999999999977654
No 311
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.15 E-value=0.019 Score=51.26 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=20.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.++++.+|+|+|||.++-..+...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999888776643
No 312
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.15 E-value=0.03 Score=57.84 Aligned_cols=106 Identities=20% Similarity=0.226 Sum_probs=61.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechh----hhhhh--hc----------------------chHHHH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPE----LLNKY--IG----------------------QSEENI 282 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~----l~~~~--~g----------------------~~~~~~ 282 (478)
...++|.||+|+|||++++.++... |.+++++...+ +.... .| ......
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~q 360 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHL 360 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHHH
Confidence 4458899999999999999998654 44555554321 11000 00 123345
Q ss_pred HHHHHHhHhCCCeEEEEcCCccccCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCeEEEEEcCCC
Q psy450 283 RNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRV 348 (478)
Q Consensus 283 ~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vI~ttn~~ 348 (478)
+.++..+....|.+|++|-+..+..... ....+..+..++..+. .. ++.+|.++...
T Consensus 361 ~~~~a~~l~~~p~llilDp~~~Ld~~~~-----~~~~~~~i~~ll~~l~---~~-g~tvilvsh~~ 417 (525)
T 1tf7_A 361 QIIKSEINDFKPARIAIDSLSALARGVS-----NNAFRQFVIGVTGYAK---QE-EITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHTTCCSEEEEECHHHHTSSSC-----HHHHHHHHHHHHHHHH---HT-TCEEEEEEECS
T ss_pred HHHHHHHHhhCCCEEEEcChHHHHhhCC-----hHHHHHHHHHHHHHHH---hC-CCEEEEEECcc
Confidence 5566666778899999997766664311 1113444555555553 22 34455555543
No 313
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.14 E-value=0.0038 Score=56.21 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=29.7
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC----CcEEEEechhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR----MNFLAVKGPEL 270 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~----~~~~~v~~~~l 270 (478)
+..++|.|++|+||||+++.++..++ .+++.++...+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45688999999999999999998764 55777775444
No 314
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.13 E-value=0.0038 Score=55.01 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=25.7
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPEL 270 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l 270 (478)
-+.|.||+|+||||+++.++...+. .+.++..++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 4789999999999999999986543 244555444
No 315
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.10 E-value=0.0033 Score=55.07 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=22.6
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
+.-+.|.||+|+||||+++.++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 44588999999999999999998764
No 316
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.09 E-value=0.0031 Score=61.05 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=27.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhCCcEEEEec
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECRMNFLAVKG 267 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~ 267 (478)
.-|+|.||+|+|||++++.++..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 358899999999999999999999876665543
No 317
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.05 E-value=0.017 Score=58.01 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=28.5
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEech
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGP 268 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~ 268 (478)
+..++++|++|+||||++..+|..+ |..+..+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4579999999999999999998876 4666666653
No 318
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.05 E-value=0.008 Score=58.78 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.-+-|.||+|+||||++++++...
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 347899999999999999998754
No 319
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.04 E-value=0.0048 Score=61.86 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=26.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFL 263 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~ 263 (478)
+.-|++.|+||+||||+++.++..++..++
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 556889999999999999999998876554
No 320
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.03 E-value=0.026 Score=51.57 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=17.7
Q ss_pred CceEEEeCCCCChHHHHHHHHH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVA 255 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la 255 (478)
...+++.||+|||||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4569999999999998766553
No 321
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.01 E-value=0.0061 Score=54.05 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=42.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEech--h------hhhhhhcch-----HHHHHHHHHHhHhCCCeEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGP--E------LLNKYIGQS-----EENIRNVFLKARSAAPCVV 297 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~--~------l~~~~~g~~-----~~~~~~~~~~a~~~~p~il 297 (478)
..-.+++||.|+|||+.+-.++..+ +..++.+... . +.+ ..|.. .....+++..+.. ...+|
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s-~~g~~~~a~~~~~~~~i~~~~~~-~~dvV 85 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVS-HMGEKEQAVAIKNSREILKYFEE-DTEVI 85 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEEC-TTSCEEECEEESSSTHHHHHCCT-TCSEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHh-hcCCceeeEeeCCHHHHHHHHhc-cCCEE
Confidence 3457889999999999888887766 6666665421 0 000 01100 0001244544432 35799
Q ss_pred EEcCCcccc
Q psy450 298 FFDELDSLA 306 (478)
Q Consensus 298 ~iDeid~l~ 306 (478)
+|||++.+.
T Consensus 86 iIDEaqfl~ 94 (191)
T 1xx6_A 86 AIDEVQFFD 94 (191)
T ss_dssp EECSGGGSC
T ss_pred EEECCCCCC
Confidence 999998865
No 322
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.01 E-value=0.0038 Score=59.48 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=26.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh-CCcEEEEechhh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC-RMNFLAVKGPEL 270 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~-~~~~~~v~~~~l 270 (478)
.-|+|.|+||+||||+++.+++.+ +. ..++...+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~--~~i~~D~~ 37 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGF--YNINRDDY 37 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTE--EEECHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCc--EEecccHH
Confidence 458999999999999999999864 54 44444444
No 323
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.00 E-value=0.0097 Score=56.48 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=23.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
+.-+.+.||+|+||||+++.++..++
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 55688999999999999999998875
No 324
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.00 E-value=0.0036 Score=55.48 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.5
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEe
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVK 266 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~ 266 (478)
..+++|.||+|+|||++|..+++..+ .++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 56799999999999999999998876 555444
No 325
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.99 E-value=0.0044 Score=58.59 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=27.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEechhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPEL 270 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l 270 (478)
+.-|.|+|++||||||+++.++ .+|.+++ ++..+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~i--d~D~~ 108 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYII--DSDHL 108 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEE--EHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEE--ehhHH
Confidence 4568999999999999999999 6787654 44444
No 326
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.97 E-value=0.0058 Score=58.47 Aligned_cols=128 Identities=12% Similarity=0.080 Sum_probs=69.1
Q ss_pred CCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe--------------eCHhHHhccccEEEe
Q psy450 44 NLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL--------------IRKQIQKLFLKTINV 109 (478)
Q Consensus 44 ~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via--------------ld~al~rRf~~~i~~ 109 (478)
..++|||||++.+... ....++..++.....+. .. .......+.||+ +++++..||. .+.+
T Consensus 96 ~~g~L~LDEi~~l~~~-~q~~Ll~~l~~~~~~~~--g~-~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~-~~~i 170 (304)
T 1ojl_A 96 DGGTLFLDEIGDISPL-MQVRLLRAIQEREVQRV--GS-NQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLN-VVAI 170 (304)
T ss_dssp TTSEEEEESCTTCCHH-HHHHHHHHHHSSBCCBT--TB-CCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHS-SEEE
T ss_pred CCCEEEEeccccCCHH-HHHHHHHHHhcCEeeec--CC-cccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcC-eeEE
Confidence 3689999999998654 34556666664211100 00 001122344444 3566777885 5666
Q ss_pred CCCCHHHH----HHHHHHHHhhc----CC-CCCCChhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCHHH
Q psy450 110 LPLTEPER----RLLIQYQLDCL----GG-DYGFDASLVEYLSSVTSGFERHDLTCLVRLSVKNKMLKQGINKRDLQKED 180 (478)
Q Consensus 110 ~~P~~~~r----~~il~~~~~~~----~~-~~~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~a~~~~~~~~~~it~~d 180 (478)
..|...+| ..+++.++... +. ....+.+.++.+....-.-+..+++++++.++..+ ....|+.+|
T Consensus 171 ~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~------~~~~i~~~~ 244 (304)
T 1ojl_A 171 EMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL------TGEYISERE 244 (304)
T ss_dssp ECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHC------CSSSBCGGG
T ss_pred eccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC------CCCcccHHh
Confidence 66665544 44666665442 11 12344455566766552335567777777666532 234577666
Q ss_pred HH
Q psy450 181 FQ 182 (478)
Q Consensus 181 ~~ 182 (478)
+.
T Consensus 245 l~ 246 (304)
T 1ojl_A 245 LP 246 (304)
T ss_dssp SC
T ss_pred hh
Confidence 63
No 327
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.97 E-value=0.018 Score=59.28 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=30.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLN 272 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~ 272 (478)
+.-|+++|.||+||||+++.+++.+ +.....++..++..
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~ 76 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRR 76 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHH
Confidence 4468899999999999999999988 44555666655543
No 328
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.95 E-value=0.0039 Score=56.10 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
+.-+.|.||+|+||||+++.++..+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45588999999999999999998874
No 329
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.94 E-value=0.0048 Score=55.20 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=26.8
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEE
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLA 264 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~ 264 (478)
-|.|.|++|||||++++.+|+.+|.+++.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 48899999999999999999999999873
No 330
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.91 E-value=0.0043 Score=54.62 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=21.4
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhC
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
-+.|.||+|+||||+++.++..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999998764
No 331
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.90 E-value=0.0039 Score=55.64 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
+.-+.|.||+|+||||+++.++..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4458899999999999999999876
No 332
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.88 E-value=0.0036 Score=56.07 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=23.8
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh-CCcE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC-RMNF 262 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~-~~~~ 262 (478)
+.-+.+.|++|+||||+++.++..+ +..+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~ 50 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSV 50 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 3457899999999999999999877 4443
No 333
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.87 E-value=0.029 Score=54.15 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=22.5
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
+.-+.|.||+|+||||+++.++..+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5668899999999999999999866
No 334
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.87 E-value=0.0072 Score=63.34 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=32.7
Q ss_pred CCceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhh
Q psy450 233 KRSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPEL 270 (478)
Q Consensus 233 ~~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l 270 (478)
++..|+|.|.||+||||+++.+++.+ |.+++.++...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 36679999999999999999999999 999988875443
No 335
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.86 E-value=0.022 Score=58.58 Aligned_cols=37 Identities=8% Similarity=0.014 Sum_probs=28.7
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh----CCcEEEEec
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC----RMNFLAVKG 267 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~----~~~~~~v~~ 267 (478)
|.. ..-+++.|+||+|||+++..+|... +.++++++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 444 4558899999999999999998765 457777765
No 336
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.84 E-value=0.005 Score=54.85 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=22.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
+.-+.|.||+|+||||+++.++....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34578999999999999999998763
No 337
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.83 E-value=0.035 Score=52.75 Aligned_cols=69 Identities=19% Similarity=0.055 Sum_probs=44.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhhh-------hh------------hc-chHHHHHHHHHHhH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELLN-------KY------------IG-QSEENIRNVFLKAR 290 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~~-------~~------------~g-~~~~~~~~~~~~a~ 290 (478)
+..+.+.|++|+||||++..+|..+ +..+..+++..... .+ .+ .....+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4567889999999999999998766 66676666531100 00 01 12223345666665
Q ss_pred hCCCeEEEEcCC
Q psy450 291 SAAPCVVFFDEL 302 (478)
Q Consensus 291 ~~~p~il~iDei 302 (478)
.....+++||-.
T Consensus 178 ~~~~D~ViIDTp 189 (297)
T 1j8m_F 178 SEKMEIIIVDTA 189 (297)
T ss_dssp HTTCSEEEEECC
T ss_pred hCCCCEEEEeCC
Confidence 456679999974
No 338
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.81 E-value=0.088 Score=46.54 Aligned_cols=18 Identities=39% Similarity=0.418 Sum_probs=15.3
Q ss_pred ceEEEeCCCCChHHHHHH
Q psy450 235 SGLLLYGPPGTGKTLIAK 252 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~ 252 (478)
+++++.+|+|+|||..+-
T Consensus 39 ~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 569999999999998643
No 339
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.81 E-value=0.0062 Score=54.21 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=23.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
+.-+.|.||+|+|||++++.++....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 55688999999999999999998765
No 340
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.81 E-value=0.04 Score=55.86 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
+.-+.|.|++|+||||+++.|+..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4568899999999999999999866
No 341
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.79 E-value=0.0046 Score=63.61 Aligned_cols=70 Identities=14% Similarity=0.273 Sum_probs=44.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC--CcEEEEechh-hhhh---h--------hcchHHHHHHHHHHhHhCCCeEEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR--MNFLAVKGPE-LLNK---Y--------IGQSEENIRNVFLKARSAAPCVVFF 299 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~--~~~~~v~~~~-l~~~---~--------~g~~~~~~~~~~~~a~~~~p~il~i 299 (478)
+.++++.||+|+||||++++++..+. ...+.+.... +... . .+.....+...+..+....|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 44599999999999999999988774 3455554322 1100 0 0111113445566666788999999
Q ss_pred cCCc
Q psy450 300 DELD 303 (478)
Q Consensus 300 Deid 303 (478)
.|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9963
No 342
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.73 E-value=0.03 Score=54.16 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=27.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~ 267 (478)
..-+++.|+||+|||+++..+|... +.++.+++.
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3458899999999999999998764 667777654
No 343
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.73 E-value=0.026 Score=54.17 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=23.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
|.-+.|.||+||||||+++.++..++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 55688999999999999999998875
No 344
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.73 E-value=0.0056 Score=54.90 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=25.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEEe
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAVK 266 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~ 266 (478)
+.-+.|.||+|+||||+++.++..++..+.++.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 445789999999999999999998873333444
No 345
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.72 E-value=0.035 Score=56.00 Aligned_cols=37 Identities=27% Similarity=0.188 Sum_probs=28.7
Q ss_pred CCC-CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEec
Q psy450 231 GLK-RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKG 267 (478)
Q Consensus 231 ~~~-~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~ 267 (478)
|.. +.-+++.|+||+|||+++..+|... |.++.+++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 444 4458899999999999999887655 667777764
No 346
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.69 E-value=0.035 Score=60.92 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHH
Q psy450 235 SGLLLYGPPGTGKTLIAKAVAT 256 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~ 256 (478)
.-+.|+||.|+||||+.+.++.
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHH
Confidence 3478999999999999999874
No 347
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.67 E-value=0.031 Score=51.97 Aligned_cols=116 Identities=16% Similarity=0.003 Sum_probs=60.1
Q ss_pred CCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe--------------eCHhHHhccccEEEe
Q psy450 44 NLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL--------------IRKQIQKLFLKTINV 109 (478)
Q Consensus 44 ~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via--------------ld~al~rRf~~~i~~ 109 (478)
..++|||||++.+... ....++..++.....+. .. .......+.+|+ +++++.+||.. +.+
T Consensus 100 ~~~~l~lDEi~~l~~~-~q~~Ll~~l~~~~~~~~--g~-~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~-~~i 174 (265)
T 2bjv_A 100 DGGTLFLDELATAPMM-VQEKLLRVIEYGELERV--GG-SQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAF-DVV 174 (265)
T ss_dssp TTSEEEEESGGGSCHH-HHHHHHHHHHHCEECCC--CC---CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCS-EEE
T ss_pred CCcEEEEechHhcCHH-HHHHHHHHHHhCCeecC--CC-cccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcC-cEE
Confidence 4689999999998754 34556666663211000 00 000112233444 35778889964 455
Q ss_pred CCCCHHH----HHHHHHHHHhh----cCCCC--CCChhHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy450 110 LPLTEPE----RRLLIQYQLDC----LGGDY--GFDASLVEYLSSVTSGFERHDLTCLVRLSVKN 164 (478)
Q Consensus 110 ~~P~~~~----r~~il~~~~~~----~~~~~--~~~~~~i~~la~~t~G~s~~di~~l~~~a~~~ 164 (478)
..|...+ ...+++.++.. .+.+. ..+.+.++.+....-..+..+++++++.++..
T Consensus 175 ~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 175 QLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (265)
T ss_dssp ECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred eCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 5555444 44455555433 22211 33444446665543334556777777776654
No 348
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.65 E-value=0.036 Score=57.77 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=31.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC----CcEEEEechhhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR----MNFLAVKGPELL 271 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~----~~~~~v~~~~l~ 271 (478)
+..|+|.|+||+||||+|+.+++.++ .+++.++...+.
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir 437 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVR 437 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHH
Confidence 55689999999999999999999986 778888765543
No 349
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.65 E-value=0.0065 Score=54.15 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=22.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
+..+.|.||+|+||||+++.++....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 34589999999999999999988663
No 350
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.63 E-value=0.055 Score=52.00 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=27.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~ 267 (478)
+..++++|++|+||||++..+|..+ +..+..+++
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 5568899999999999999998765 556666654
No 351
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.63 E-value=0.0066 Score=59.97 Aligned_cols=33 Identities=15% Similarity=0.320 Sum_probs=27.7
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhCCcEEEEec
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECRMNFLAVKG 267 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~ 267 (478)
.-+++.||+|+|||+++..+|..++..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 347899999999999999999999877666543
No 352
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.012 Score=51.49 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=28.7
Q ss_pred cHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh
Q psy450 212 LSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 212 ~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.....+.+.+.+.............+++.|++|+|||+++..+....
T Consensus 26 ~~~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 26 ISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CHHHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44555555554443332222235579999999999999999998643
No 353
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.53 E-value=0.099 Score=50.53 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=23.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh-----CCcEEEEec
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC-----RMNFLAVKG 267 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~-----~~~~~~v~~ 267 (478)
.++++.+|+|+|||..+-..+... +...+.+.+
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P 82 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTP 82 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECS
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcC
Confidence 579999999999999866554433 344555443
No 354
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.47 E-value=0.035 Score=52.77 Aligned_cols=69 Identities=29% Similarity=0.249 Sum_probs=43.6
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechh----hhh---hh--------h----c-chHHHHHHHHHHhH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPE----LLN---KY--------I----G-QSEENIRNVFLKAR 290 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~----l~~---~~--------~----g-~~~~~~~~~~~~a~ 290 (478)
+..+.+.|++|+||||++..+|..+ +..+..++..- ... .+ . + ......+..+..+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~ 177 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 177 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5567888999999999999998765 55666555421 000 00 0 1 11222355666665
Q ss_pred hCCCeEEEEcCC
Q psy450 291 SAAPCVVFFDEL 302 (478)
Q Consensus 291 ~~~p~il~iDei 302 (478)
...+.+|+||+-
T Consensus 178 ~~~~D~viiDtp 189 (295)
T 1ls1_A 178 LEARDLILVDTA 189 (295)
T ss_dssp HHTCCEEEEECC
T ss_pred hCCCCEEEEeCC
Confidence 566789999985
No 355
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.45 E-value=0.021 Score=51.30 Aligned_cols=32 Identities=13% Similarity=0.029 Sum_probs=24.6
Q ss_pred eEEEeCCCCChHHHHHHHHHHHh---CCcEEEEec
Q psy450 236 GLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKG 267 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~ 267 (478)
-.+++||.|+|||+.+-.++..+ +.+++.+..
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 35689999999999888887655 667766653
No 356
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.45 E-value=0.011 Score=53.93 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=27.3
Q ss_pred EEEeCCCCChHHHHHHHHHHHhCCcEEEEechhhh
Q psy450 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELL 271 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~l~ 271 (478)
+-|.|+||+||||.++.+++.++.+.+ +..+++
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdll 43 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQI--STGDML 43 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCee--echHHH
Confidence 678999999999999999999987765 444444
No 357
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.44 E-value=0.044 Score=53.04 Aligned_cols=89 Identities=10% Similarity=0.089 Sum_probs=60.8
Q ss_pred CCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe-----eCHhHHhccccEEEeCCCCHHHHH
Q psy450 44 NLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL-----IRKQIQKLFLKTINVLPLTEPERR 118 (478)
Q Consensus 44 ~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via-----ld~al~rRf~~~i~~~~P~~~~r~ 118 (478)
.+.|++|||+|.+... ..+.++..++.. .....+++++ +.|++++|+. .+.|+.++.++..
T Consensus 110 ~~~viiiDe~~~l~~~-~~~~L~~~le~~------------~~~~~~il~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~ 175 (340)
T 1sxj_C 110 GFKLIILDEADAMTNA-AQNALRRVIERY------------TKNTRFCVLANYAHKLTPALLSQCT-RFRFQPLPQEAIE 175 (340)
T ss_dssp SCEEEEETTGGGSCHH-HHHHHHHHHHHT------------TTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHH
T ss_pred CceEEEEeCCCCCCHH-HHHHHHHHHhcC------------CCCeEEEEEecCccccchhHHhhce-eEeccCCCHHHHH
Confidence 3689999999988653 345566556531 1122233333 8999999995 7899999999999
Q ss_pred HHHHHHHhhcCCCCCCChhHHHHHHHhcCC
Q psy450 119 LLIQYQLDCLGGDYGFDASLVEYLSSVTSG 148 (478)
Q Consensus 119 ~il~~~~~~~~~~~~~~~~~i~~la~~t~G 148 (478)
+++...+... .+..+.+.++.++..+.|
T Consensus 176 ~~l~~~~~~~--~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 176 RRIANVLVHE--KLKLSPNAEKALIELSNG 203 (340)
T ss_dssp HHHHHHHHTT--TCCBCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHc--CCCCCHHHHHHHHHHcCC
Confidence 9998888554 233444555778876654
No 358
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.41 E-value=0.0086 Score=52.37 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=27.9
Q ss_pred EEEeCCCCChHHHHHHHHHHHhCCcEEEEechh
Q psy450 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPE 269 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~~~~~~~v~~~~ 269 (478)
+|++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999987 88888887643
No 359
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.37 E-value=0.033 Score=55.89 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=45.5
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh----CCcEEEEechhhhhh----------hh---------c-chHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC----RMNFLAVKGPELLNK----------YI---------G-QSEENIRNVFLKA 289 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~----~~~~~~v~~~~l~~~----------~~---------g-~~~~~~~~~~~~a 289 (478)
++.+++.|++|+||||++-.+|..+ |..+..+++...... .. + .....+...+..+
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 6678899999999999999998665 677777776432110 00 0 1122335566666
Q ss_pred HhCCCeEEEEcCC
Q psy450 290 RSAAPCVVFFDEL 302 (478)
Q Consensus 290 ~~~~p~il~iDei 302 (478)
......+++||-.
T Consensus 180 ~~~~~D~VIIDTp 192 (433)
T 2xxa_A 180 KLKFYDVLLVDTA 192 (433)
T ss_dssp HHTTCSEEEEECC
T ss_pred HhCCCCEEEEECC
Confidence 6555679999874
No 360
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.34 E-value=0.028 Score=56.23 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=19.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVAT 256 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~ 256 (478)
.+-.++.|+||||||+++..++.
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Confidence 44578999999999999988764
No 361
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.33 E-value=0.0043 Score=55.70 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=21.8
Q ss_pred EEEeCCCCChHHHHHHHHHHHhCC
Q psy450 237 LLLYGPPGTGKTLIAKAVATECRM 260 (478)
Q Consensus 237 iLl~Gp~GtGKT~la~~la~~~~~ 260 (478)
|.|.|++|+||||+++.++..++.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999998853
No 362
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.32 E-value=0.041 Score=60.71 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=34.1
Q ss_pred cCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHH
Q psy450 210 GGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATE 257 (478)
Q Consensus 210 ~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~ 257 (478)
+|.+..++.|.+.+... . ..+-+.++|+.|+|||++|+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~---d--~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL---R--PAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC---C--SSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc---C--CCeEEEEEcCCCccHHHHHHHHHHh
Confidence 88888888888876532 1 1456889999999999999999853
No 363
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.32 E-value=0.011 Score=53.79 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=26.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhCCcEEE
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECRMNFLA 264 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~~~~~~ 264 (478)
.-|.+.|++|||||++++.+|+.+|.+++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 357889999999999999999999998854
No 364
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.27 E-value=0.01 Score=50.78 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
..-+.|.||.|+||||++++++..+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3457899999999999999999987
No 365
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.22 E-value=0.051 Score=56.13 Aligned_cols=34 Identities=26% Similarity=0.182 Sum_probs=24.9
Q ss_pred CceEEEeCCCCChHHHHHHHH--HHHh--CCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIAKAV--ATEC--RMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~l--a~~~--~~~~~~v~~ 267 (478)
...++|.||+|+||||+++.+ +... +...++++.
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 456899999999999999994 3332 444566654
No 366
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.22 E-value=0.01 Score=53.19 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=22.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
+.-+.|.||+|+||||++++++..+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34478999999999999999998774
No 367
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.18 E-value=0.068 Score=58.77 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHH
Q psy450 235 SGLLLYGPPGTGKTLIAKAVAT 256 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~ 256 (478)
.-++|+||.|+||||+.+.++-
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999853
No 368
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.18 E-value=0.41 Score=42.68 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=18.6
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
..+++.+|+|+|||..+-..+-..
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHHh
Confidence 469999999999998766555433
No 369
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.17 E-value=0.011 Score=53.45 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
+.-+.|.||+|+||||+++.++...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3458899999999999999999876
No 370
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.17 E-value=0.015 Score=50.31 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=22.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCc
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMN 261 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~ 261 (478)
..+++|.|+||+|||++|..+... |..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~ 42 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQ 42 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCe
Confidence 568999999999999999999874 443
No 371
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.17 E-value=0.2 Score=45.29 Aligned_cols=51 Identities=20% Similarity=0.090 Sum_probs=30.0
Q ss_pred CCCCcccccCcHHHHHHHHHHHH-hh--hhh----CCCCCceEEEeCCCCChHHHHHH
Q psy450 202 PNVSWEDIGGLSKLKAEILSTFR-GV--NRT----SGLKRSGLLLYGPPGTGKTLIAK 252 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~~-~~--~~~----~~~~~~~iLl~Gp~GtGKT~la~ 252 (478)
+..+|+++.-.+...+.|.+.-. .+ .+. .-...+++++.+|+|+|||..+-
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 34568888777777766654210 00 000 00014569999999999998643
No 372
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.14 E-value=0.0079 Score=57.13 Aligned_cols=36 Identities=14% Similarity=0.354 Sum_probs=24.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhC---CcEEEEechhh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECR---MNFLAVKGPEL 270 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~---~~~~~v~~~~l 270 (478)
.-|.|.||+|+||||+++.+++.++ ..+..++..++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 3488999999999999999998775 44555665444
No 373
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.13 E-value=0.012 Score=53.79 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=26.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC--CcEEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR--MNFLAV 265 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~--~~~~~v 265 (478)
+.-|.|.||||+||||+++.+++.++ ..++..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 44588999999999999999999986 455443
No 374
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.10 E-value=0.1 Score=50.91 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=26.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEe
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVK 266 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~ 266 (478)
...+.+.|+||+|||+++..++..+ |.++..++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 4568999999999999999998776 55554444
No 375
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.10 E-value=0.013 Score=53.18 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=22.5
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
+.-+.|.||+|+||||+++.++....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34578999999999999999998764
No 376
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.09 E-value=0.012 Score=54.22 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=23.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhCCc
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECRMN 261 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~~~ 261 (478)
.-+-|.||+|+||||+++.++..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 347799999999999999999988743
No 377
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.07 E-value=0.027 Score=56.26 Aligned_cols=92 Identities=20% Similarity=0.265 Sum_probs=51.8
Q ss_pred CCcccccCcHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHhCC---cEEEEech-hhhhh-----h
Q psy450 204 VSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRM---NFLAVKGP-ELLNK-----Y 274 (478)
Q Consensus 204 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~~~---~~~~v~~~-~l~~~-----~ 274 (478)
.++++++-....+..+..++. .+...+++.||+|+||||++++++..+.. .++.+..+ ++... .
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~-------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~ 216 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIK-------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQ 216 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHT-------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEE
T ss_pred CCHHHcCCCHHHHHHHHHHHH-------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEE
Confidence 456677655555555554421 11344789999999999999999988742 34433221 11000 0
Q ss_pred hc-chHHHHHHHHHHhHhCCCeEEEEcCC
Q psy450 275 IG-QSEENIRNVFLKARSAAPCVVFFDEL 302 (478)
Q Consensus 275 ~g-~~~~~~~~~~~~a~~~~p~il~iDei 302 (478)
.. ...-.....+..+....|.++++.|+
T Consensus 217 v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 217 VNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp CBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred EccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 00 00011233444555567889999885
No 378
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.05 E-value=0.013 Score=51.75 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=20.9
Q ss_pred eEEEeCCCCChHHHHHHHHHHHh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.+.|.||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 37899999999999999999876
No 379
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.96 E-value=0.13 Score=46.06 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=28.7
Q ss_pred CCCcccccCcHHHHHHHHHHHH-hh--hhhC----CCCCceEEEeCCCCChHHHH
Q psy450 203 NVSWEDIGGLSKLKAEILSTFR-GV--NRTS----GLKRSGLLLYGPPGTGKTLI 250 (478)
Q Consensus 203 ~~~~~~i~g~~~~k~~l~~~~~-~~--~~~~----~~~~~~iLl~Gp~GtGKT~l 250 (478)
..+|+++.-.+...+.+.+.-- .+ .+.. -...+++++.+|+|+|||..
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHH
Confidence 4567777766666666654310 00 0000 00135699999999999987
No 380
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.88 E-value=0.043 Score=52.55 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=22.6
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
+.-+.|.||+|+||||+++.|+..+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 45578999999999999999998763
No 381
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.84 E-value=0.2 Score=44.78 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=15.7
Q ss_pred ceEEEeCCCCChHHHHHHH
Q psy450 235 SGLLLYGPPGTGKTLIAKA 253 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~ 253 (478)
+.+++.+|+|+|||..+-.
T Consensus 42 ~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCEEEECCSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 4699999999999986443
No 382
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.83 E-value=0.04 Score=52.54 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
+.-+.|.||+|+||||+++.+|..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999876
No 383
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.80 E-value=0.26 Score=48.16 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=17.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVAT 256 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~ 256 (478)
..++++.+|+|+|||..+-..+-
T Consensus 45 ~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 45 GMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp TCCEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHHH
Confidence 35699999999999987654443
No 384
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.79 E-value=0.14 Score=46.38 Aligned_cols=69 Identities=17% Similarity=0.137 Sum_probs=37.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEech-------hhhhhhhcch-----HHHHHHHHHHhHhCCCeEEEE
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGP-------ELLNKYIGQS-----EENIRNVFLKARSAAPCVVFF 299 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~-------~l~~~~~g~~-----~~~~~~~~~~a~~~~p~il~i 299 (478)
.-.+++||.|+|||+.+-..+... |.+++.+... .+.+.. |.. -....+++..+ ....+|+|
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvViI 96 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIGI 96 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEEE
Confidence 346788999999998766665544 5566655521 011110 000 00001234443 34579999
Q ss_pred cCCcccc
Q psy450 300 DELDSLA 306 (478)
Q Consensus 300 Deid~l~ 306 (478)
||++-+.
T Consensus 97 DEaQF~~ 103 (234)
T 2orv_A 97 DEGQFFP 103 (234)
T ss_dssp SSGGGCT
T ss_pred Echhhhh
Confidence 9998874
No 385
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.77 E-value=0.18 Score=49.72 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=31.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHh-h--hhhC----CCCCceEEEeCCCCChHHHHHHHHH
Q psy450 203 NVSWEDIGGLSKLKAEILSTFRG-V--NRTS----GLKRSGLLLYGPPGTGKTLIAKAVA 255 (478)
Q Consensus 203 ~~~~~~i~g~~~~k~~l~~~~~~-~--~~~~----~~~~~~iLl~Gp~GtGKT~la~~la 255 (478)
..+|+++.-.+...+.+...--. + .+.. -...+++++.+|+|+|||..+-..+
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHH
Confidence 45688887777777666542100 0 0000 0013569999999999997665443
No 386
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=94.75 E-value=0.22 Score=47.17 Aligned_cols=50 Identities=18% Similarity=0.084 Sum_probs=31.8
Q ss_pred CCCCCcccccCcHHHHHHHHHHH----------HhhhhhCCCCCceEEEeCCCCChHHHHH
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTF----------RGVNRTSGLKRSGLLLYGPPGTGKTLIA 251 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~----------~~~~~~~~~~~~~iLl~Gp~GtGKT~la 251 (478)
.+..+|+++.-.+...+.|...- ..+....+ +++++++.+|+|+|||...
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~-~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAE-PPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSS-SCCCEEEECCTTSSHHHHH
T ss_pred CCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcC-CCCeEEEECCCCCCccHHH
Confidence 34567888887777777665420 00111111 2467999999999999864
No 387
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.73 E-value=0.032 Score=48.26 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=25.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEe
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVK 266 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~ 266 (478)
.-+.+.|++|+|||+++..++..+ +.++..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 358899999999999999998876 45555555
No 388
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.68 E-value=0.023 Score=58.11 Aligned_cols=27 Identities=7% Similarity=0.030 Sum_probs=24.6
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRM 260 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~ 260 (478)
+..|+|.|.+||||||+++++++.++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999975
No 389
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.65 E-value=0.11 Score=56.35 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.8
Q ss_pred CceEEEeCCCCChHHHHHHHHHHH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATE 257 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~ 257 (478)
+.-+.|+||.|+||||+.+.++..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 345889999999999999999864
No 390
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.63 E-value=0.077 Score=50.64 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=22.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
+.-+.|.||+|+||||+++.++..++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44578999999999999999998775
No 391
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.60 E-value=0.021 Score=54.42 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=24.1
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNF 262 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~ 262 (478)
...+.|+||+|+||||+++.|+..+.-.+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 45588999999999999999998874333
No 392
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.58 E-value=0.12 Score=53.50 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=30.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC---CcEEEEechhhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR---MNFLAVKGPELL 271 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~---~~~~~v~~~~l~ 271 (478)
+..|+|+|++|+||||+++.+++.++ .++..++...+.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir 412 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR 412 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhh
Confidence 45688999999999999999998774 567777765443
No 393
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.56 E-value=0.34 Score=44.06 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=29.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHh-h--hhhC----CCCCceEEEeCCCCChHHHHHH
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFRG-V--NRTS----GLKRSGLLLYGPPGTGKTLIAK 252 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~~-~--~~~~----~~~~~~iLl~Gp~GtGKT~la~ 252 (478)
.|..+|+++.-.+.+.+.+.+.--. + .+.. -...+.+++.+|+|+|||...-
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred CccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 3456677776666665555431000 0 0000 0013569999999999998743
No 394
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.55 E-value=0.013 Score=53.45 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=15.3
Q ss_pred ceEEEeCCCCChHHHHHHHHH-HHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVA-TEC 258 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la-~~~ 258 (478)
.-+.|.||+|+||||+++.++ ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 457899999999999999999 765
No 395
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.54 E-value=0.025 Score=53.99 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
+.-+.|.||+|+||||+++.++..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 5568899999999999999999876
No 396
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.52 E-value=0.1 Score=53.05 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=28.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC---CcEEEEechhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR---MNFLAVKGPEL 270 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~---~~~~~v~~~~l 270 (478)
+..|++.|.||+||||+++.+++.++ .+...++..++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~ 78 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQY 78 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchh
Confidence 45689999999999999999998874 34455554333
No 397
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=94.49 E-value=0.27 Score=49.76 Aligned_cols=49 Identities=18% Similarity=0.093 Sum_probs=30.3
Q ss_pred CCCCcccccCcHHHHHHHHHHH----------HhhhhhCCCCCceEEEeCCCCChHHHHH
Q psy450 202 PNVSWEDIGGLSKLKAEILSTF----------RGVNRTSGLKRSGLLLYGPPGTGKTLIA 251 (478)
Q Consensus 202 ~~~~~~~i~g~~~~k~~l~~~~----------~~~~~~~~~~~~~iLl~Gp~GtGKT~la 251 (478)
+..+|+++.-.+...+.|...- ..+....+ .++.+++.||+|+|||..+
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~-~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAE-PPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSB-SCCEEEEECCSSSSHHHHH
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcC-CCCcEEEEcCCCCchhHHH
Confidence 3457888877777666664310 00000011 2467999999999999874
No 398
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.47 E-value=0.092 Score=52.42 Aligned_cols=70 Identities=30% Similarity=0.258 Sum_probs=43.6
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEechhhh-------hhh---h---------cch-HHHHHHHHHHhH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKGPELL-------NKY---I---------GQS-EENIRNVFLKAR 290 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~~~l~-------~~~---~---------g~~-~~~~~~~~~~a~ 290 (478)
+..+.+.|++|+||||++..+|..+ +..+..+++.... ..+ . +.. .......+..++
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~ 177 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 177 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHH
Confidence 5568889999999999999999876 4566666542110 000 0 011 222355666665
Q ss_pred hCCCeEEEEcCCc
Q psy450 291 SAAPCVVFFDELD 303 (478)
Q Consensus 291 ~~~p~il~iDeid 303 (478)
.....+++||=.-
T Consensus 178 ~~~~DvVIIDTaG 190 (425)
T 2ffh_A 178 LEARDLILVDTAG 190 (425)
T ss_dssp HTTCSEEEEECCC
T ss_pred HCCCCEEEEcCCC
Confidence 4556799998643
No 399
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.46 E-value=0.031 Score=52.97 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=25.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh----CCcEEEEe
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC----RMNFLAVK 266 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~----~~~~~~v~ 266 (478)
..-++|.||||+|||++++.++..+ |.++++++
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4458899999999999999998765 44566654
No 400
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.41 E-value=0.039 Score=55.57 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=21.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
...++|+||+|+|||++++.++...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhh
Confidence 3458999999999999999887654
No 401
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.40 E-value=0.032 Score=50.01 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=25.2
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhCCcEEEE
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECRMNFLAV 265 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~~~~~~v 265 (478)
.|-|+|..||||||+++.+++ +|.+++..
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vida 39 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDT 39 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEEC
Confidence 488999999999999999987 88877543
No 402
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.38 E-value=0.059 Score=52.58 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
+.-+.|.||+|+||||+++.+|..+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4568899999999999999999876
No 403
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.36 E-value=0.028 Score=51.59 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=23.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
+.-|.+.|++|+||||+++.+++.++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 44588999999999999999999984
No 404
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.34 E-value=0.38 Score=46.82 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=17.2
Q ss_pred CceEEEeCCCCChHHHHHHHH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAV 254 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~l 254 (478)
++++++.+|+|+|||..+-..
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 367999999999999865544
No 405
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.33 E-value=0.051 Score=57.01 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=21.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
..-+-|.||+|+||||+++.++..+
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3457899999999999999998754
No 406
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.31 E-value=0.027 Score=49.01 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
.-.+|+||.|+|||+++++|...++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3468999999999999999988775
No 407
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.30 E-value=0.026 Score=49.11 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=21.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.-+.+.|++|+||||+++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 458899999999999999998765
No 408
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.29 E-value=0.012 Score=54.87 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=23.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
+.-|.|.|++|+||||+++.+++.++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 55688999999999999999999983
No 409
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.25 E-value=0.018 Score=52.72 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=21.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
.-+.|.||+|+||||+++.++....
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3478999999999999999987654
No 410
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.23 E-value=0.023 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.6
Q ss_pred eEEEeCCCCChHHHHHHHHHHHh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
-+.|.||+|+||||++++++...
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999765
No 411
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.14 E-value=0.019 Score=52.29 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=21.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
.-+.|.||+|+||||++++++....
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3477999999999999999987653
No 412
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.13 E-value=0.034 Score=58.77 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh
Q psy450 212 LSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 212 ~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.+.+++.+...+. ....+++||||||||+++..+...+
T Consensus 182 n~~Q~~av~~~l~---------~~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 182 NHSQVYAVKTVLQ---------RPLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp CHHHHHHHHHHHT---------CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---------CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4666666665442 2347899999999999887776543
No 413
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.09 E-value=0.049 Score=49.06 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=25.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEe
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVK 266 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~ 266 (478)
+.-|.|.|++|+||||+++.+++.+ +.+++...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 4457889999999999999999887 45555443
No 414
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.07 E-value=0.026 Score=58.43 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=30.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC----CcEEEEechhhh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR----MNFLAVKGPELL 271 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~----~~~~~v~~~~l~ 271 (478)
+..+.|.|++|+||||++++|+..++ ..+..++...+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 45688999999999999999999885 345557776554
No 415
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.03 E-value=0.02 Score=51.42 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHHH
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATE 257 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~ 257 (478)
.-+.|.||+|+||||++++++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 34789999999999999999865
No 416
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.03 E-value=0.15 Score=44.96 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=15.3
Q ss_pred ceEEEeCCCCChHHHHHH
Q psy450 235 SGLLLYGPPGTGKTLIAK 252 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~ 252 (478)
+++++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 569999999999997554
No 417
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.02 E-value=0.022 Score=52.29 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
..-+.|.||+|+||||+++.++...
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999998754
No 418
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.02 E-value=0.21 Score=49.94 Aligned_cols=36 Identities=33% Similarity=0.364 Sum_probs=26.8
Q ss_pred eEEEeCCCCChHHHHHHHHHHHh----CCcEEEEech-hhh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATEC----RMNFLAVKGP-ELL 271 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~----~~~~~~v~~~-~l~ 271 (478)
++++.+|+|+|||..+-.++... +.+++.+.+. .+.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~ 65 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLV 65 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHH
Confidence 69999999999999888776554 5566666553 443
No 419
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.96 E-value=0.092 Score=50.84 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.6
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
..-+.|.||||+||||++++++..+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4457899999999999999998765
No 420
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.95 E-value=0.021 Score=49.58 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.4
Q ss_pred eEEEeCCCCChHHHHHHHHHHHhC
Q psy450 236 GLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
.+.|.|++|+||||+++.++..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999998763
No 421
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.95 E-value=0.054 Score=48.19 Aligned_cols=65 Identities=11% Similarity=0.048 Sum_probs=45.0
Q ss_pred hcCCCeEEEecccccccch-h---hHhhhccccccccccccchhhhccCCCcEEEEe-----eCHhHHhccccEEEeCCC
Q psy450 42 KYNLDIFKYDEVNYLCNVK-Y---VYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL-----IRKQIQKLFLKTINVLPL 112 (478)
Q Consensus 42 ~~~p~ilfiDe~d~i~~~r-~---~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via-----ld~al~rRf~~~i~~~~P 112 (478)
....+||+|||++.+.+.+ . ...+++.+.. .....-.|++++ +|.+++.|++..+++..|
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~-----------~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNT-----------HRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGG-----------TTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred ccCceEEEEEChhhhccCccccchhHHHHHHHHh-----------cCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence 3568999999999997654 1 1123333332 223345688888 999999999999999987
Q ss_pred CHHHH
Q psy450 113 TEPER 117 (478)
Q Consensus 113 ~~~~r 117 (478)
....+
T Consensus 154 ~~~~~ 158 (199)
T 2r2a_A 154 KMGMR 158 (199)
T ss_dssp SSCCE
T ss_pred ccCcc
Confidence 65544
No 422
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.94 E-value=0.024 Score=51.14 Aligned_cols=25 Identities=32% Similarity=0.495 Sum_probs=21.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
.-+.|.||+|+||||++++++....
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3478999999999999999987653
No 423
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.94 E-value=0.024 Score=55.27 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.5
Q ss_pred eEEEeCCCCChHHHHHHHHHHHh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
-+.|.||+||||||++++|+...
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47799999999999999999754
No 424
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.84 E-value=0.031 Score=52.36 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=20.9
Q ss_pred eEEEeCCCCChHHHHHHHHHHHh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.+.+.||+|+||||+.++++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999866
No 425
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.82 E-value=0.025 Score=52.72 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=21.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
.-+.|.||+|+||||++++++....
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3477999999999999999987653
No 426
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=93.81 E-value=0.12 Score=55.21 Aligned_cols=34 Identities=35% Similarity=0.347 Sum_probs=23.0
Q ss_pred CceEEEeCCCCChHHHHHHHHH-HHh--CCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVA-TEC--RMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la-~~~--~~~~~~v~~ 267 (478)
..++++.||+|+|||+.+-... +.+ +...+++.+
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P 76 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVP 76 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 4569999999999999874333 222 445555543
No 427
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.80 E-value=0.19 Score=53.99 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.1
Q ss_pred ceEEEeCCCCChHHHHHHHHHHH
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATE 257 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~ 257 (478)
..+.|+||.|+||||+.+.++..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 45789999999999999999864
No 428
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.76 E-value=0.061 Score=48.48 Aligned_cols=32 Identities=22% Similarity=0.172 Sum_probs=26.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCCcEEEE
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRMNFLAV 265 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~~~~~v 265 (478)
+.-|.|.|++|+||||.++.+++.++.+...+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 44588999999999999999999998754333
No 429
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=93.74 E-value=0.19 Score=50.28 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=22.1
Q ss_pred CceEEEeCCCCChHHHHH-HHHHH---HhCCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIA-KAVAT---ECRMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la-~~la~---~~~~~~~~v~~ 267 (478)
.+.+++.||+|+|||..+ ..+.+ .-+...+.+.+
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~P 39 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAP 39 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECc
Confidence 356999999999999975 43332 22444554443
No 430
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.73 E-value=0.032 Score=51.65 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=20.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHHH
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATE 257 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~ 257 (478)
.-+.|.||+|+||||+++.++..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34789999999999999999974
No 431
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.71 E-value=0.031 Score=54.49 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=20.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.-+.|.||+||||||++++|+...
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 347799999999999999999754
No 432
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=93.71 E-value=0.53 Score=50.34 Aligned_cols=34 Identities=35% Similarity=0.360 Sum_probs=23.5
Q ss_pred CceEEEeCCCCChHHHHHHHHH-HH---hCCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVA-TE---CRMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la-~~---~~~~~~~v~~ 267 (478)
..++++.||+|+|||+.+-... +. -+...+++.+
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P 83 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTP 83 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECS
T ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 5679999999999999884433 22 2455555543
No 433
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.70 E-value=0.027 Score=52.87 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=20.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.-+.|.||+|+||||++++++...
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 347899999999999999998754
No 434
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.68 E-value=0.039 Score=54.13 Aligned_cols=27 Identities=15% Similarity=0.341 Sum_probs=23.6
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhCCc
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECRMN 261 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~~~ 261 (478)
..+.|.||+|+||||+++.|+..+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 458899999999999999999987654
No 435
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.67 E-value=0.033 Score=52.09 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHHH
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATE 257 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~ 257 (478)
.-+.|.||+|+||||+++.++..
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34789999999999999999975
No 436
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.67 E-value=0.028 Score=51.76 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
...+.|.||+|+||||++++++...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999998754
No 437
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.67 E-value=0.047 Score=49.65 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=19.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
+.-|.|.|++|+||||+++.+++.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457889999999999999999887
No 438
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.66 E-value=0.032 Score=54.52 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.5
Q ss_pred eEEEeCCCCChHHHHHHHHHHHh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
-+.|.||+||||||++++|+...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47799999999999999999754
No 439
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.66 E-value=0.028 Score=52.29 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=20.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.-+.|.||+|+||||++++++...
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 347799999999999999998755
No 440
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.66 E-value=0.028 Score=51.67 Aligned_cols=25 Identities=36% Similarity=0.410 Sum_probs=21.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
.-+.|.||+|+||||+++.++....
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3478999999999999999987653
No 441
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.65 E-value=0.74 Score=45.03 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=16.8
Q ss_pred ceEEEeCCCCChHHHHHHHHH
Q psy450 235 SGLLLYGPPGTGKTLIAKAVA 255 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la 255 (478)
+++++.+|+|+|||..+-..+
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHH
Confidence 469999999999998655443
No 442
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.65 E-value=0.028 Score=51.92 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.-+.|.||+|+||||+++.++...
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 347899999999999999998765
No 443
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=93.63 E-value=0.73 Score=47.13 Aligned_cols=34 Identities=15% Similarity=0.345 Sum_probs=24.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh--------CCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC--------RMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~--------~~~~~~v~~ 267 (478)
.+++++.+|+|+|||..+-..+... +..++.+.+
T Consensus 19 ~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 60 (555)
T 3tbk_A 19 GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFAN 60 (555)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 3469999999999998866665443 455555544
No 444
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.62 E-value=0.033 Score=54.42 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=20.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.-+.|.||+||||||++++++...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 347799999999999999999754
No 445
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.59 E-value=0.029 Score=52.30 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=21.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
.-+.|.||+|+||||+++.++....
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 3478999999999999999987653
No 446
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.58 E-value=0.034 Score=54.59 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=20.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.-+.|.||+||||||++++|+...
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 347799999999999999999754
No 447
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.58 E-value=0.1 Score=47.01 Aligned_cols=19 Identities=37% Similarity=0.431 Sum_probs=15.7
Q ss_pred CceEEEeCCCCChHHHHHH
Q psy450 234 RSGLLLYGPPGTGKTLIAK 252 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~ 252 (478)
.+++++.+|+|+|||..+-
T Consensus 57 ~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCChHHHHHH
Confidence 4569999999999998644
No 448
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.53 E-value=0.034 Score=50.67 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.2
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.-+.|.||+|+||||+++.++..+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999998765
No 449
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.52 E-value=0.029 Score=54.57 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=20.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.-+.|.||+||||||+++.|+...
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 347799999999999999999754
No 450
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.52 E-value=0.04 Score=48.64 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=20.1
Q ss_pred eEEEeCCCCChHHHHHHHHHHH
Q psy450 236 GLLLYGPPGTGKTLIAKAVATE 257 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~ 257 (478)
.+.+.|++|+|||++++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999875
No 451
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.51 E-value=0.031 Score=52.28 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=20.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.-+.|.||+|+||||++++++...
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 347899999999999999998755
No 452
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.50 E-value=0.031 Score=51.65 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=21.6
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
..+.|.||+|+||||+++.++....
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3478999999999999999987654
No 453
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.49 E-value=0.037 Score=48.58 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.6
Q ss_pred eEEEeCCCCChHHHHHHHHHHHh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.+.+.|++|+|||++++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999998754
No 454
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.48 E-value=0.34 Score=46.80 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.7
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
...+.+.|+||+||||++..++..+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999998765
No 455
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.47 E-value=0.036 Score=54.47 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=20.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.-+.|.||+||||||++++|+...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 347799999999999999999755
No 456
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.42 E-value=0.032 Score=52.31 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.-+.|.||+|+|||||++.++...
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 347899999999999999998755
No 457
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.42 E-value=0.033 Score=51.75 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.-+.|.||+|+||||++++++...
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 347899999999999999998755
No 458
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.39 E-value=0.055 Score=49.03 Aligned_cols=27 Identities=22% Similarity=0.159 Sum_probs=23.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhCC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECRM 260 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~~ 260 (478)
+.-|.|.|++|+||||+++.+++.++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 555888999999999999999987654
No 459
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.38 E-value=0.033 Score=52.43 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.-+.|.||+|+||||+++.++...
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 347899999999999999998765
No 460
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.37 E-value=0.055 Score=58.70 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHHh
Q psy450 212 LSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 212 ~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.+.+++.+...+. ....+++||||||||+++..+...+
T Consensus 358 n~~Q~~Av~~~l~---------~~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 358 NHSQVYAVKTVLQ---------RPLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp CHHHHHHHHHHHT---------SSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcc---------CCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4666666665442 2347899999999999877776543
No 461
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.36 E-value=0.037 Score=51.54 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=21.4
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
+..+.|.||+|+||||+++.++...
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3458899999999999999998754
No 462
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.33 E-value=0.076 Score=47.57 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.7
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
...+++.|++|+|||+++..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45689999999999999999998764
No 463
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.32 E-value=0.14 Score=58.78 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=22.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR 259 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~ 259 (478)
+..+.++||+|+||||+++.+...+.
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred CcEEEEEecCCCcHHHHHHHhccccc
Confidence 34588999999999999999988763
No 464
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.31 E-value=0.39 Score=51.81 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=24.5
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~ 267 (478)
+.++++.||+|+|||..+-..+-.. +...+.+.+
T Consensus 389 ~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaP 425 (780)
T 1gm5_A 389 PMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVP 425 (780)
T ss_dssp CCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4579999999999999776554332 556665554
No 465
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=93.29 E-value=0.12 Score=47.93 Aligned_cols=19 Identities=37% Similarity=0.403 Sum_probs=15.7
Q ss_pred ceEEEeCCCCChHHHHHHH
Q psy450 235 SGLLLYGPPGTGKTLIAKA 253 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~ 253 (478)
+.+++.+|+|+|||..+-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 4599999999999986543
No 466
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.28 E-value=0.11 Score=49.55 Aligned_cols=77 Identities=10% Similarity=0.051 Sum_probs=56.6
Q ss_pred hhhhHHHHhhhhc----CCCeEEEecccccccchhhHhhhccccccccccccchhhhccCCCcEEEEe------eCHhHH
Q psy450 31 HLNDIVKINLKKY----NLDIFKYDEVNYLCNVKYVYFKLCSFDSVNVKSNETKDQQCKQQHKKKLVL------IRKQIQ 100 (478)
Q Consensus 31 ~~~~if~~~a~~~----~p~ilfiDe~d~i~~~r~~~~~l~~~d~~~~~~~~~~~~~~~~~~~v~via------ld~al~ 100 (478)
.+|.+.+ .+... ..-|+||||+|.+-.. ..|.+|..|+. .+...++|++ +.|+++
T Consensus 66 ~ir~li~-~~~~~p~~~~~kvviIdead~lt~~-a~naLLk~LEe-------------p~~~t~fIl~t~~~~kl~~tI~ 130 (305)
T 2gno_A 66 DIRTIKD-FLNYSPELYTRKYVIVHDCERMTQQ-AANAFLKALEE-------------PPEYAVIVLNTRRWHYLLPTIK 130 (305)
T ss_dssp HHHHHHH-HHTSCCSSSSSEEEEETTGGGBCHH-HHHHTHHHHHS-------------CCTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHH-HHhhccccCCceEEEeccHHHhCHH-HHHHHHHHHhC-------------CCCCeEEEEEECChHhChHHHH
Confidence 5788887 66532 2369999999998544 36778877873 1223344444 899999
Q ss_pred hccccEEEeCCCCHHHHHHHHHHHH
Q psy450 101 KLFLKTINVLPLTEPERRLLIQYQL 125 (478)
Q Consensus 101 rRf~~~i~~~~P~~~~r~~il~~~~ 125 (478)
+| .++|+.|+.++..+.++..+
T Consensus 131 SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 131 SR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp TT---SEEEECCCCHHHHHHHHHHH
T ss_pred ce---eEeCCCCCHHHHHHHHHHHh
Confidence 99 89999999999888887766
No 467
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=93.28 E-value=0.6 Score=45.75 Aligned_cols=51 Identities=18% Similarity=0.076 Sum_probs=31.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHH-hh---------hhhCCCCCceEEEeCCCCChHHHHHH
Q psy450 201 VPNVSWEDIGGLSKLKAEILSTFR-GV---------NRTSGLKRSGLLLYGPPGTGKTLIAK 252 (478)
Q Consensus 201 ~~~~~~~~i~g~~~~k~~l~~~~~-~~---------~~~~~~~~~~iLl~Gp~GtGKT~la~ 252 (478)
.+..+|+++.-.+...+.+.+.-. .+ ....+ .+..+++.+|+|+|||..+-
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAE-PPQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSS-SCCCEEEECCTTSCHHHHHH
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCCeEEEECCCCchHHHHHH
Confidence 445668887777777666654210 00 00011 24679999999999998753
No 468
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.26 E-value=0.035 Score=51.87 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=20.8
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.-+.|.||+|+||||+++.++...
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 347799999999999999998754
No 469
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.23 E-value=0.037 Score=51.33 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.0
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.-+.|.||+|+||||+++.++...
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 347899999999999999998765
No 470
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.23 E-value=0.052 Score=45.58 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=19.8
Q ss_pred eEEEeCCCCChHHHHHHHHHHH
Q psy450 236 GLLLYGPPGTGKTLIAKAVATE 257 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~ 257 (478)
.+++.|++|+|||++++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999764
No 471
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.21 E-value=0.53 Score=46.22 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=16.2
Q ss_pred CceEEEeCCCCChHHHHHHH
Q psy450 234 RSGLLLYGPPGTGKTLIAKA 253 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~ 253 (478)
.+.+++.+|+|+|||..+-.
T Consensus 77 ~~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp TCCEEECCCSCSSSHHHHHH
T ss_pred CCCEEEECCCCCcccHHHHH
Confidence 34599999999999987443
No 472
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.18 E-value=0.036 Score=54.33 Aligned_cols=70 Identities=19% Similarity=0.310 Sum_probs=41.6
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHhC--CcEEEEech-hhhh-----h--hhc-c-------hHHHHHHHHHHhHhCCCe
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATECR--MNFLAVKGP-ELLN-----K--YIG-Q-------SEENIRNVFLKARSAAPC 295 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~~--~~~~~v~~~-~l~~-----~--~~g-~-------~~~~~~~~~~~a~~~~p~ 295 (478)
...+++.||+|+||||++++++.... ...+.++.. ++.. . +.. + ....++..+..+....|.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd 254 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPT 254 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCC
Confidence 34599999999999999999998764 234444421 1100 0 010 0 111244555566666778
Q ss_pred EEEEcCCc
Q psy450 296 VVFFDELD 303 (478)
Q Consensus 296 il~iDeid 303 (478)
.++++|+.
T Consensus 255 ~~l~~e~r 262 (361)
T 2gza_A 255 RILLAELR 262 (361)
T ss_dssp EEEESCCC
T ss_pred EEEEcCch
Confidence 88888864
No 473
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.17 E-value=0.087 Score=49.17 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=20.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHHH
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATE 257 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~ 257 (478)
..+.|.|+||+|||++.+++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999753
No 474
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=93.16 E-value=0.58 Score=48.00 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=23.6
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh--------CCcEEEEec
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC--------RMNFLAVKG 267 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~--------~~~~~~v~~ 267 (478)
.++++.+|+|+|||..+-..+... +..++.+.+
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 63 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 63 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeC
Confidence 459999999999998876655443 455555544
No 475
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.09 E-value=0.039 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=20.5
Q ss_pred eEEEeCCCCChHHHHHHHHHHHh
Q psy450 236 GLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.+.|.||+|+||||+++.++...
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998765
No 476
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.05 E-value=0.031 Score=54.54 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.-+.|.||+||||||++++|+...
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 347799999999999999999754
No 477
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.00 E-value=0.056 Score=49.47 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.3
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
+.-|.|.|++|+||||+++.+++.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4558899999999999999999877
No 478
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.98 E-value=0.058 Score=45.60 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=20.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHHH
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATE 257 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~ 257 (478)
-.+++.|++|+|||++++.+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 479
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.95 E-value=0.29 Score=52.46 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=23.0
Q ss_pred CceEEEeCCCCChHHHHHH-HHHHH---hCCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIAK-AVATE---CRMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~-~la~~---~~~~~~~v~~ 267 (478)
..++++.||+|+|||+.+. .+.+. -+...+++.+
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P 76 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVP 76 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECS
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 5679999999999999873 33222 2455555543
No 480
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.94 E-value=0.045 Score=47.61 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=19.2
Q ss_pred eEEEeCCCCChHHHHHHHHHH
Q psy450 236 GLLLYGPPGTGKTLIAKAVAT 256 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~ 256 (478)
.+++.|++|+|||++++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999999975
No 481
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.92 E-value=0.044 Score=54.13 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.3
Q ss_pred ceEEEeCCCCChHHHHHHHHHHH
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATE 257 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~ 257 (478)
.-+.|.||+||||||++++|+..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 34789999999999999999864
No 482
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.91 E-value=0.054 Score=46.13 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.4
Q ss_pred eEEEeCCCCChHHHHHHHHHH
Q psy450 236 GLLLYGPPGTGKTLIAKAVAT 256 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~ 256 (478)
.+.+.|++|+|||++.+.+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999975
No 483
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.91 E-value=0.061 Score=48.06 Aligned_cols=25 Identities=24% Similarity=0.571 Sum_probs=22.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
...+++.|++|+|||+++..+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4569999999999999999998754
No 484
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=92.88 E-value=0.27 Score=45.10 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=15.8
Q ss_pred CceEEEeCCCCChHHHHHH
Q psy450 234 RSGLLLYGPPGTGKTLIAK 252 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~ 252 (478)
.+.+++.+|+|+|||..+-
T Consensus 80 ~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 80 GRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEEcCCCCCchhHhH
Confidence 3569999999999998643
No 485
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.84 E-value=0.064 Score=45.15 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.2
Q ss_pred ceEEEeCCCCChHHHHHHHHHHH
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATE 257 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~ 257 (478)
-.+++.|++|+|||+++..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998764
No 486
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=92.80 E-value=0.24 Score=55.78 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=24.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh---CCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC---RMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~---~~~~~~v~~ 267 (478)
...+++.||+|+|||..+...+... +...+++.+
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P 235 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 235 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence 4569999999999999876554433 555555544
No 487
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=92.75 E-value=0.56 Score=42.57 Aligned_cols=18 Identities=44% Similarity=0.600 Sum_probs=15.2
Q ss_pred CceEEEeCCCCChHHHHH
Q psy450 234 RSGLLLYGPPGTGKTLIA 251 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la 251 (478)
.+++++.+|+|+|||..+
T Consensus 66 ~~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAF 83 (245)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 346999999999999864
No 488
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.71 E-value=0.13 Score=47.40 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=27.2
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh--CCcEEEEec
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC--RMNFLAVKG 267 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~--~~~~~~v~~ 267 (478)
...+++.|.+|+||||++..++..+ +.++..++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 5568889999999999999998776 556666653
No 489
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.70 E-value=0.061 Score=45.18 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=20.0
Q ss_pred eEEEeCCCCChHHHHHHHHHHH
Q psy450 236 GLLLYGPPGTGKTLIAKAVATE 257 (478)
Q Consensus 236 ~iLl~Gp~GtGKT~la~~la~~ 257 (478)
.+++.|++|+|||++++.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 490
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.67 E-value=0.13 Score=46.09 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=22.0
Q ss_pred CceEEEeCCCCChHHHHHHHHHHHh
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
...+++.|++|+|||+++..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4558899999999999999998875
No 491
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.65 E-value=0.12 Score=51.51 Aligned_cols=37 Identities=14% Similarity=0.307 Sum_probs=26.1
Q ss_pred HHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHHH
Q psy450 217 AEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATE 257 (478)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~~ 257 (478)
..+++.+...... +..+.|.||+|+||||+.++++..
T Consensus 56 ~~i~~~L~~~~~~----~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 56 SAISDALKEIDSS----VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HHHHHHHHHHHHC----CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred hhhhhhhhhcccC----CeEEEEECCCCCcHHHHHHHHhCC
Confidence 4444444444322 335789999999999999999873
No 492
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.64 E-value=0.069 Score=45.15 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.2
Q ss_pred ceEEEeCCCCChHHHHHHHHHHH
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATE 257 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~ 257 (478)
-.+++.|++|+|||+++..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999764
No 493
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.64 E-value=0.069 Score=44.98 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=20.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHHH
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATE 257 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~ 257 (478)
..+++.|++|+|||++++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999999864
No 494
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.57 E-value=0.072 Score=45.55 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.4
Q ss_pred ceEEEeCCCCChHHHHHHHHHHH
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATE 257 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~ 257 (478)
..+++.|++|+|||++++.+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999753
No 495
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.56 E-value=0.073 Score=45.05 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.9
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
-.+++.|++|+|||++++.+...-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998653
No 496
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.51 E-value=0.077 Score=57.59 Aligned_cols=36 Identities=31% Similarity=0.487 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHHhhhhhCCCCCceEEEeCCCCChHHHHHHHHHH
Q psy450 212 LSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVAT 256 (478)
Q Consensus 212 ~~~~k~~l~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~la~~la~ 256 (478)
.+.+++.+...+. ....+++||||||||+++..+..
T Consensus 362 n~~Q~~Av~~~l~---------~~~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 362 NSSQSNAVSHVLQ---------RPLSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp CHHHHHHHHHHTT---------CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---------CCCEEEECCCCCCHHHHHHHHHH
Confidence 4666666655432 22478999999999998766644
No 497
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.48 E-value=0.068 Score=48.10 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.5
Q ss_pred ceEEEeCCCCChHHHHHHHHHHHh
Q psy450 235 SGLLLYGPPGTGKTLIAKAVATEC 258 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~~~ 258 (478)
.-|.|.|++|+||||.++.+++.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 347889999999999999999877
No 498
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.47 E-value=0.068 Score=45.56 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.6
Q ss_pred ceEEEeCCCCChHHHHHHHHHH
Q psy450 235 SGLLLYGPPGTGKTLIAKAVAT 256 (478)
Q Consensus 235 ~~iLl~Gp~GtGKT~la~~la~ 256 (478)
-.+++.|++|+|||++++.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 3589999999999999999864
No 499
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.43 E-value=0.067 Score=45.99 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=20.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATE 257 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~ 257 (478)
...+.+.|++|+|||++.+.++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345899999999999999999864
No 500
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.43 E-value=0.076 Score=47.07 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.9
Q ss_pred CceEEEeCCCCChHHHHHHHHHHH
Q psy450 234 RSGLLLYGPPGTGKTLIAKAVATE 257 (478)
Q Consensus 234 ~~~iLl~Gp~GtGKT~la~~la~~ 257 (478)
...|++.|++|+|||+++..+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446999999999999999999753
Done!