RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy450
(478 letters)
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 243 bits (621), Expect = 1e-78
Identities = 81/257 (31%), Positives = 129/257 (50%), Gaps = 19/257 (7%)
Query: 201 VPNVSWEDIGGLSKLKAEI-----LSTFRGVNRTSGLKRS-GLLLYGPPGTGKTLIAKAV 254
P V+++D+ G + K E+ G + G+LL GPPG GKT +A+AV
Sbjct: 3 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAV 62
Query: 255 ATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRG-QED 313
A E R+ F+ G + + ++G +R++F A+ APC+VF DE+D++ +RG
Sbjct: 63 AGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG 122
Query: 314 QSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDR 373
+ ++ ++QLL EMDG + ++ ATNR D+LDPA+LRPGR D+ + + D
Sbjct: 123 GGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP-DV 181
Query: 374 ISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQV 433
+ +L+ R L++DV L L P GAD+ ++ + A A R
Sbjct: 182 KGREQILRIHARGKPLAEDVDLALLAKRTPG-FVGADLENLLNEAALLAAREGRRK---- 236
Query: 434 KSAPVIVTMDDFLGACS 450
+TM D A S
Sbjct: 237 ------ITMKDLEEAAS 247
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 239 bits (612), Expect = 4e-77
Identities = 80/257 (31%), Positives = 136/257 (52%), Gaps = 19/257 (7%)
Query: 199 PSVPNVSWEDIGGLSKLKAEI-----LSTFRGVNRTSGLKRS-GLLLYGPPGTGKTLIAK 252
++ D+ G + K E+ + G K G+L+ GPPGTGKTL+AK
Sbjct: 4 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAK 63
Query: 253 AVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQE 312
A+A E ++ F + G + + ++G +R++F +A+ AAPC++F DE+D++ +RG
Sbjct: 64 AIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG 123
Query: 313 -DQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYE 371
++ ++Q+L EMDG ++ + ++ ATNR D+LDPA+LRPGR D+ + VGL
Sbjct: 124 LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP- 182
Query: 372 DRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAP 431
D + +LK +R+ L+ D+ + P SGAD+ ++ + A A R
Sbjct: 183 DVRGREQILKVHMRRVPLAPDIDAAIIARGTPG-FSGADLANLVNEAALFAARGNKR--- 238
Query: 432 QVKSAPVIVTMDDFLGA 448
+V+M +F A
Sbjct: 239 -------VVSMVEFEKA 248
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 201 bits (511), Expect = 4e-62
Identities = 121/262 (46%), Positives = 162/262 (61%), Gaps = 16/262 (6%)
Query: 201 VPNVSWEDIGGLSKLKAEILST------FRGVNRTSGLKRS-GLLLYGPPGTGKTLIAKA 253
VP V+WEDIGGL +K E+ G+ S G+L YGPPG GKTL+AKA
Sbjct: 1 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKA 60
Query: 254 VATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQED 313
+A EC+ NF+++KGPELL + G+SE N+R +F KAR AAPCV+FFDELDS+A RG
Sbjct: 61 IANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI 120
Query: 314 QS-SGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYED 372
G DRV++Q+L EMDG+ T ++VFI+GATNR D++DPAILRPGRLD+ +Y+ L ++
Sbjct: 121 GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 180
Query: 373 RISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSA-- 430
+ +LKA +RK ++ DV L+ L SGAD+ IC A AIR I S
Sbjct: 181 KSRV-AILKANLRKSPVAKDVDLEFLAKMTN-GFSGADLTEICQRACKLAIRESIESEIR 238
Query: 431 ----PQVKSAPVIVTMDDFLGA 448
Q + + V DD +
Sbjct: 239 RERERQTNPSAMEVEEDDPVPE 260
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 160 bits (405), Expect = 8e-46
Identities = 30/201 (14%), Positives = 67/201 (33%), Gaps = 10/201 (4%)
Query: 232 LKRSGLLLYGPPGTGKTLIAKAVATEC--RMNFLAVKGPELLNKYIGQSEENIRNVFLKA 289
+++ G +GKT + A+ + + V+ E L+ Y + ++
Sbjct: 121 YASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAM 180
Query: 290 RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVD 349
V+ D L ++ + +SG + R LL+++ + S+ ++ + N
Sbjct: 181 LQ--HRVIVIDSLKNVIGAA-GGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTS 237
Query: 350 L---LDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQM 406
+ + R + + V D + VL + L +
Sbjct: 238 NDDKIVELVKEASRSNSTSLVIST-DVDGEWQVLTRTGEGLQRLTHT-LQTSYGEHSVLT 295
Query: 407 SGADIYSICSNAWTRAIRRII 427
S A +AI+ +I
Sbjct: 296 IHTSKQSGGKQASGKAIQTVI 316
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 154 bits (390), Expect = 2e-44
Identities = 98/259 (37%), Positives = 146/259 (56%), Gaps = 18/259 (6%)
Query: 204 VSWEDIGGLSKLKAEILST------FRGVNRTSGLK-RSGLLLYGPPGTGKTLIAKAVAT 256
V ++D+GG K A+I + + G+K G+LLYGPPGTGKTLIA+AVA
Sbjct: 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 60
Query: 257 ECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSS 316
E F + GPE+++K G+SE N+R F +A AP ++F DELD++AP+R +
Sbjct: 61 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK--THG 118
Query: 317 GVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQ 376
V R+VSQLL MDG+ V ++ ATNR + +DPA+ R GR D+ + +G D +
Sbjct: 119 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG-IPDATGR 177
Query: 377 LGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIIT-------S 429
L +L+ + KL+DDV L+ + + GAD+ ++CS A +AIR+ + +
Sbjct: 178 LEILQIHTKNMKLADDVDLEQVANETH-GHVGADLAALCSEAALQAIRKKMDLIDLEDET 236
Query: 430 APQVKSAPVIVTMDDFLGA 448
+ VTMDDF A
Sbjct: 237 IDAEVMNSLAVTMDDFRWA 255
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 104 bits (261), Expect = 3e-25
Identities = 31/203 (15%), Positives = 55/203 (27%), Gaps = 26/203 (12%)
Query: 233 KRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKY-IGQSEENIRNVF----- 286
K+ L GP +GKT +A A+ C L V P + +G + + VF
Sbjct: 153 KKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKG 212
Query: 287 -LKARSAAPCVVFFDELDSLAP-RRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGA 344
P + LD+L G + + +
Sbjct: 213 TGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPP----------GIVT 262
Query: 345 TNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRKFKL-SDDVSLDSLVHHFP 403
N R K + + L + ++ K + S L L+ +
Sbjct: 263 MNE---YSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYR- 318
Query: 404 SQMSGADIYSICSNAWTRAIRRI 426
A+ + R+
Sbjct: 319 ---PVAEFAQSIQSRIVEWKERL 338
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 101 bits (253), Expect = 5e-25
Identities = 33/257 (12%), Positives = 65/257 (25%), Gaps = 31/257 (12%)
Query: 204 VSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFL 263
V++ D ++L + +G LL G PG+GKT + A+ E + N +
Sbjct: 4 VNFTDKQFENRLNDNLEELIQGKKAVESPT--AFLLGGQPGSGKTSLRSAIFEETQGNVI 61
Query: 264 AVKGPEL---LNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMD 320
+ + + ++V + + + +G
Sbjct: 62 VIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTT 121
Query: 321 RVVSQLLA---------EMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYE 371
V Q +M + + LG R + + R +
Sbjct: 122 DVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDI-- 179
Query: 372 DRISQLGVLKAVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAP 431
+ L + K L D+ L S + SI
Sbjct: 180 -VVKNLPTNLETLHKTGLFSDIRL--YNREGVKLYSSLETPSISPKETLEKELN------ 230
Query: 432 QVKSAPVIVTMDDFLGA 448
V+ +
Sbjct: 231 ------RKVSGKEIQPT 241
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 101 bits (251), Expect = 6e-25
Identities = 37/245 (15%), Positives = 84/245 (34%), Gaps = 24/245 (9%)
Query: 204 VSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFL 263
+ W D ++++ + + + +LL GPP +GKT +A +A E F+
Sbjct: 12 IKWGD--PVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFI 69
Query: 264 AVKGPELLNKYIGQSEENI-RNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRV 322
+ P+ + + ++ + +F A + V D+++ L + + V
Sbjct: 70 KICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPR---FSNLV 126
Query: 323 VSQLLAEMDGVHTSQDVFI-LGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLK 381
+ LL + + +G T+R D+L + +++V L L
Sbjct: 127 LQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTIHVPNIATGEQLLEAL- 184
Query: 382 AVVRKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIITSAPQVKSAPVIVT 441
D ++ Q+ G ++ I++++
Sbjct: 185 ---ELLGNFKDKERTTIAQ----QVKGKKVWI--------GIKKLLMLIEMSLQMDPEYR 229
Query: 442 MDDFL 446
+ FL
Sbjct: 230 VRKFL 234
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 75.4 bits (184), Expect = 4e-16
Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 11/170 (6%)
Query: 205 SWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLA 264
+ ++ G +LK + L + + LLL+GPPG GKT +A +A E +N
Sbjct: 7 TLDEYIGQERLKQK-LRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRV 65
Query: 265 VKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQ---EDQSSGVMDR 321
GP + L ++F DE+ L+ + + VMD
Sbjct: 66 TSGPAIEKP-------GDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDI 118
Query: 322 VVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYE 371
V+ Q A ++GAT R L+ +L + + L E
Sbjct: 119 VIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPE 168
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 69.5 bits (169), Expect = 1e-13
Identities = 41/247 (16%), Positives = 73/247 (29%), Gaps = 35/247 (14%)
Query: 232 LKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNK--YIGQSEENIRNVFLKA 289
+ +L+ GP G GKT IA+ +A F+ V+ + + + IR++ A
Sbjct: 47 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 106
Query: 290 -----RSAAPCVVFFDELDSLAPRRGQEDQSSGVMDR-VVSQLLAEMDG---------VH 334
+VF DE+D + + E + V V LL ++G V
Sbjct: 107 GGAIDAVEQNGIVFIDEIDKICKKG--EYSGADVSREGVQRDLLPLVEGSTVSTKHGMVK 164
Query: 335 TSQDVFIL-GATNRVDLLDPAILRPGRLDKSLYVGLYED-------RISQLGVLKAVVRK 386
T +FI GA D GRL + + + +
Sbjct: 165 TDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKAL 224
Query: 387 FKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRRIIT--------SAPQVKSAPV 438
+ + + N R + ++ SA + V
Sbjct: 225 MATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTV 284
Query: 439 IVTMDDF 445
+
Sbjct: 285 NIDAAYV 291
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 67.5 bits (163), Expect = 4e-13
Identities = 29/242 (11%), Positives = 59/242 (24%), Gaps = 16/242 (6%)
Query: 218 EILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN----FLAVKGPELLNK 273
++ R G L G PGTGKT+ + + + F+ + G N
Sbjct: 27 QLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 86
Query: 274 YIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQ-------EDQSSGVMDRVVSQL 326
E R F L R + +
Sbjct: 87 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIR 146
Query: 327 LAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVVRK 386
L + + + ++ + +L+ + + Q+ + K
Sbjct: 147 LGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAK 206
Query: 387 FKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAI---RRIITSAPQVKSAPVIVTMD 443
L++ + ++ AI R +A Q + +
Sbjct: 207 AGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRK--HIAPE 264
Query: 444 DF 445
D
Sbjct: 265 DV 266
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 57.7 bits (138), Expect = 4e-10
Identities = 38/221 (17%), Positives = 74/221 (33%), Gaps = 10/221 (4%)
Query: 205 SWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLA 264
S ++ G +K + LS + G +LL GPPG GKT +A +A+E + N
Sbjct: 7 SLDEFIGQENVK-KKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV 65
Query: 265 VKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVS 324
GP L+ + + + R + L+ +D ++
Sbjct: 66 TSGPVLVKQ-----GDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIG 120
Query: 325 QLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVLKAVV 384
+ + Q ++GAT R LL + R L + Y + + + +A
Sbjct: 121 KGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAAS 178
Query: 385 RKFKLSDDVSLDSLVHHFPSQMSGADIYSICSNAWTRAIRR 425
+D + + + S+ + +
Sbjct: 179 LMDVEIEDAAAEMIAKR--SRGTPRIAIRLTKRVRDMLTVV 217
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 44.0 bits (102), Expect = 2e-05
Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 17/119 (14%)
Query: 205 SWEDIGGLSKLKAEILS-----------TFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKA 253
+ + + G ++ + +F+ + +LYGPPG GKT A
Sbjct: 12 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHL 71
Query: 254 VATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQE 312
VA E + L ++ +K + + A V +F + G+
Sbjct: 72 VAQELGYDILEQNASDVRSKTL------LNAGVKNALDNMSVVGYFKHNEEAQNLNGKH 124
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 44.0 bits (102), Expect = 2e-05
Identities = 26/243 (10%), Positives = 45/243 (18%), Gaps = 35/243 (14%)
Query: 217 AEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVA--------------------- 255
A I G G GKT +AK
Sbjct: 29 ARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 88
Query: 256 ----TECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFF--DELDSLAPRR 309
+ L V+ + G +I + + DE S+
Sbjct: 89 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSML-SS 147
Query: 310 GQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGL 369
+ V + + DGV+ + + + + I +
Sbjct: 148 PRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLP 207
Query: 370 YEDRISQLGVLKAVVRKFKLSDDVSLDSLVH-------HFPSQMSGADIYSICSNAWTRA 422
+L+ L S A A
Sbjct: 208 AYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMA 267
Query: 423 IRR 425
Sbjct: 268 EAM 270
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 44.4 bits (104), Expect = 2e-05
Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 9/131 (6%)
Query: 232 LKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARS 291
+ +L+ GP G GKT IA+ +A F+ V+ + +G + + ++
Sbjct: 47 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF--TEVGYVGKEVDSIIRDLTD 104
Query: 292 AAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLL 351
+A +V E+ + + +R++ LL + ++ R
Sbjct: 105 SAMKLVRQQEIA-----KNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFR 159
Query: 352 DPAILRPGRLD 362
LR G+LD
Sbjct: 160 KK--LREGQLD 168
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 39.1 bits (91), Expect = 6e-04
Identities = 34/179 (18%), Positives = 59/179 (32%), Gaps = 23/179 (12%)
Query: 208 DIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKA------------VA 255
+ S EIL + ++ +L+ G G GK ++A+ VA
Sbjct: 1 EYVFESPKMKEILEKIKKISCA----ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVA 56
Query: 256 TECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQS 315
+ EL G + + A +F DE+ L Q
Sbjct: 57 LNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGEL-SLEAQAKLL 115
Query: 316 SGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRI 374
+ +L + +V IL ATNR ++ +++ G+ + LY L I
Sbjct: 116 RVIESGKFYRLGGRKE---IEVNVRILAATNR-NI--KELVKEGKFREDLYYRLGVIEI 168
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 39.5 bits (91), Expect = 6e-04
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 236 GLLLYGPPGTGKTLIAKAVAT 256
G+L++G GTGK+ +A+A
Sbjct: 30 GVLVFGDRGTGKSTAVRALAA 50
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 37.3 bits (86), Expect = 0.003
Identities = 26/142 (18%), Positives = 52/142 (36%), Gaps = 25/142 (17%)
Query: 233 KRSGLLLYGPPGTGKTLIAKAVA------------TECRMNFLAVKGPELLNKYIGQSEE 280
+++ LL G G GKT IA+ +A +C + L + KY G E+
Sbjct: 38 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEK 97
Query: 281 NIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVF 340
+ + + ++F DE+ ++ + + L +S +
Sbjct: 98 RFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--------SSGKIR 149
Query: 341 ILGATN-----RVDLLDPAILR 357
++G+T + D A+ R
Sbjct: 150 VIGSTTYQEFSNIFEKDRALAR 171
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 37.1 bits (85), Expect = 0.004
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 224 RGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIR 283
L +S +LL GP G+GKTL+A+ +A + L G E++
Sbjct: 58 LEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSL--TEAGYVGEDVE 115
Query: 284 NVFLKARSAAP--------CVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEM 330
N+ + A+ +VF DE+D ++ + V V Q L ++
Sbjct: 116 NILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 170
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 35.0 bits (80), Expect = 0.010
Identities = 7/72 (9%), Positives = 16/72 (22%), Gaps = 5/72 (6%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLA-----VKGPELLNKYIGQSEENIRNVFLKARS 291
+L+ G + ++ + PE N I +
Sbjct: 18 ILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPEL 77
Query: 292 AAPCVVFFDELD 303
V + +
Sbjct: 78 YTRKYVIVHDCE 89
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 34.9 bits (79), Expect = 0.011
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPEL 270
LLL G PG+GK+ IA+A+A + + +L
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 40
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 34.7 bits (78), Expect = 0.013
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 237 LLLYGPPGTGKTLIAKAVATEC 258
LL+ PG G + A++
Sbjct: 27 LLIQALPGMGDDALIYALSRYL 48
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 34.2 bits (77), Expect = 0.016
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 229 TSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFL 263
T+ +L G G+GK+ +A VA + FL
Sbjct: 1 TTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFL 35
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 34.6 bits (78), Expect = 0.017
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 207 EDIGGLSKLKAEILSTFRGVNR-TSGLKRSGL-LLYGPPGTGKTLIAKAVATECRMN 261
E +G L S G+N T G + + ++ G GK+ + A +
Sbjct: 13 ESVGLLF-------SGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 34.8 bits (78), Expect = 0.018
Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 205 SWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFL 263
S + +L + S LLLYGP GTGK A+ +
Sbjct: 9 SLNALSHNEELTNFLKSLSD-----QPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGV 62
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 33.6 bits (75), Expect = 0.025
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 233 KRSGLLLYGPPGTGKTLIAKAVATECRMNFL 263
KR+ + L GP G GK+ I + +A + M F
Sbjct: 2 KRN-IFLVGPMGAGKSTIGRQLAQQLNMEFY 31
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 33.8 bits (76), Expect = 0.025
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFL 263
+LL G PG GKT + K +A++ + ++
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYI 33
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 33.8 bits (76), Expect = 0.026
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKG 267
+ L GPPG GKT + + + + + V G
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDG 34
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 33.0 bits (74), Expect = 0.037
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFL 263
+ + G G G T + + +A F+
Sbjct: 5 IFMVGARGCGMTTVGRELARALGYEFV 31
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 33.1 bits (74), Expect = 0.037
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQ 277
++L G GK+ I + + + +LA L+ +
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLK 46
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 32.7 bits (73), Expect = 0.051
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNF 262
+ L G G GKT ++ A+ +
Sbjct: 22 VWLTGLSGAGKTTVSMALEEYLVCHG 47
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 32.7 bits (73), Expect = 0.053
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFL 263
+L G PG+GK+ I + +A + L
Sbjct: 4 AVLVGLPGSGKSTIGRRLAKALGVGLL 30
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 32.4 bits (72), Expect = 0.072
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNF 262
+ L G +GK IA+A+
Sbjct: 9 IFLTGYMNSGKDAIARALQVTLNQQG 34
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 32.8 bits (73), Expect = 0.078
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 226 VNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAV 265
+ + GL+ L+ G TGK+ I K E + ++ +
Sbjct: 21 IEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYL 60
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 32.1 bits (73), Expect = 0.091
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 233 KRSGLLLYGPPGTGKTLIAKAVA 255
K++ L+ GP TGK+ +
Sbjct: 52 KKNCLVFCGPANTGKSYFGMSFI 74
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 31.4 bits (70), Expect = 0.11
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFL 263
++ G G+GK+ +A+A+A + + FL
Sbjct: 3 IVFIGFMGSGKSTLARALAKDLDLVFL 29
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 31.6 bits (70), Expect = 0.13
Identities = 8/44 (18%), Positives = 18/44 (40%)
Query: 238 LLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEEN 281
+ G +GK+++ +A G E + + +G E+
Sbjct: 11 AILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQA 54
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 31.6 bits (70), Expect = 0.16
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 241 GPPGTGKTLIAKAVATECRMNFL 263
GP G GK + KA+A + + L
Sbjct: 10 GPSGAGKGTLCKAMAEALQWHLL 32
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 31.1 bits (69), Expect = 0.18
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNF 262
+L+ G PGTGKT +A+ +A E
Sbjct: 8 ILITGTPGTGKTSMAEMIAAELDGFQ 33
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 31.3 bits (70), Expect = 0.19
Identities = 29/176 (16%), Positives = 47/176 (26%), Gaps = 42/176 (23%)
Query: 205 SWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLA 264
++ D+ G + + + G L G G GKT IA+ +A
Sbjct: 10 TFADVVGQEHVLTALANGLS-----LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 64
Query: 265 VKGPELL----------------------NKYIGQSEENIRNVFLKARSAAPCVVFFDEL 302
P + + + + + NV V DE+
Sbjct: 65 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 124
Query: 303 DSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVFILGATNRVDLLDPAILRP 358
L R + LL ++ + V L AT L IL
Sbjct: 125 HML--SRHSFN-----------ALLKTLE--EPPEHVKFLLATTDPQKLPVTILSR 165
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 31.1 bits (69), Expect = 0.23
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 241 GPPGTGKTLIAKAVATECRMNFL 263
GP +GK+ +AK +A + +L
Sbjct: 10 GPASSGKSTVAKIIAKDFGFTYL 32
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 31.2 bits (69), Expect = 0.25
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 5/46 (10%)
Query: 229 TSGLKRSGL-LLYGPPGTGKTL----IAKAVATECRMNFLAVKGPE 269
+ + L P G GK++ +A +A + +
Sbjct: 23 LPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTG 68
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 30.8 bits (68), Expect = 0.30
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 238 LLYGPPGTGKTLIAKAVATECRM 260
L+G TGK+ + +A C++
Sbjct: 38 ELFGEFRTGKSQLCHTLAVTCQI 60
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 30.5 bits (67), Expect = 0.35
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 231 GLKRSGL-LLYGPPGTGKTLIAKAVATEC 258
G++ + ++G TGKT I +A C
Sbjct: 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation
factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Length = 213
Score = 30.6 bits (68), Expect = 0.35
Identities = 30/193 (15%), Positives = 66/193 (34%), Gaps = 19/193 (9%)
Query: 224 RGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMNFLAVK---GPELLNKYIGQSEE 280
+ G + + +YG GTGKT + +A E + V + + ++
Sbjct: 26 KEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKK 85
Query: 281 NIRNVFLKARSAAPCVVFFDELDSLAPRRGQEDQSSGVMDRVVSQLLAEMDGVHTSQDVF 340
N F + ++ D++ L+ G+E + L E + S
Sbjct: 86 GTINEFRN-MYKSVDLLLLDDVQFLS---GKERTQIEFFHIFNTLYLLEKQIILASDRHP 141
Query: 341 ILGATNRVDLLDPAILRPGRLDKSLYVGLYEDRISQLGVL--KAVVRKFKLSDDVSLDSL 398
L+ R + + V + D ++ ++ K +L +V +D L
Sbjct: 142 QKLDGVSDRLVS-------RFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEV-IDYL 193
Query: 399 VHHFPS--QMSGA 409
+ + + ++ G
Sbjct: 194 LENTKNVREIEGK 206
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 30.1 bits (66), Expect = 0.44
Identities = 17/73 (23%), Positives = 24/73 (32%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVFLKARSAAPCV 296
+L YGPPGTGKT A+ E L LN + +R
Sbjct: 36 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSK 95
Query: 297 VFFDELDSLAPRR 309
+L++
Sbjct: 96 PSKHDLENYPCPP 108
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 29.6 bits (65), Expect = 0.59
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFL 263
++ GP G GK+ K +A + +
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAY 31
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 29.3 bits (64), Expect = 0.59
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 237 LLLYGPPGTGKTLIAKAVATE 257
+L G PG+GK+ A+ +
Sbjct: 5 ILTIGCPGSGKSTWAREFIAK 25
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 29.5 bits (65), Expect = 0.63
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFL 263
++L GPPG GK A + L
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERFHAAHL 31
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 29.6 bits (65), Expect = 0.66
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 231 GLKRSGL-LLYGPPGTGKTLIAKAVATECRMN 261
GL L+ G GTGKTL + +
Sbjct: 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 53
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 29.7 bits (65), Expect = 0.67
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 233 KRSGLLLYGPPGTGKTLIAKAVATECRM 260
++ ++G G+GKT +A +A ++
Sbjct: 35 TQAITEVFGEFGSGKTQLAHTLAVMVQL 62
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 29.5 bits (66), Expect = 0.77
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 218 EILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVA 255
S F G KR+ + L+GP TGKT IA+A+A
Sbjct: 88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIA 125
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 29.2 bits (64), Expect = 0.77
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAV 265
L GTGKT + K + +
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRP 33
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 29.1 bits (64), Expect = 0.81
Identities = 5/29 (17%), Positives = 16/29 (55%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAV 265
+++ G P +GK + + T+ ++ ++
Sbjct: 6 VMISGAPASGKGTQCELIKTKYQLAHISA 34
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 29.5 bits (65), Expect = 0.85
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 231 GLKRSGL-LLYGPPGTGKTLIAKAVATEC 258
G + + L G GTGKTL+
Sbjct: 22 GFFKDSIILATGATGTGKTLLVSRFVENA 50
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 29.0 bits (64), Expect = 1.00
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFL 263
+ G PG+GK ++ + + L
Sbjct: 9 AAIMGAPGSGKGTVSSRITKHFELKHL 35
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 28.9 bits (63), Expect = 1.1
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 238 LLYGPPGTGKTLIAKAVATEC 258
+G TGKT ++ +
Sbjct: 41 EAFGEFRTGKTQLSHTLCVTA 61
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 28.9 bits (63), Expect = 1.2
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 231 GLKRSGL-LLYGPPGTGKTLIAKAVATEC 258
GL+ + G G+GKT I
Sbjct: 30 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 58
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 28.8 bits (63), Expect = 1.2
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYI 275
+L GPPG GK A +A + ++L +
Sbjct: 6 AVLLGPPGAGKGTQAPKLAK--NFCVCHLATGDMLRAMV 42
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 28.3 bits (62), Expect = 1.3
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 237 LLLYGPPGTGKTLIAKAVA 255
L+L G PG GK A+ +
Sbjct: 3 LVLMGLPGAGKGTQAEKIV 21
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 28.1 bits (61), Expect = 1.4
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 233 KRSGLLLYGPPGTGKTLIA 251
K +L PG GKT
Sbjct: 6 KGMTTVLDFHPGAGKTRRF 24
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 28.3 bits (62), Expect = 1.5
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 237 LLLYGPPGTGKTLIAKAVATE 257
++ G PG GK+ +
Sbjct: 17 VVAVGFPGAGKSTFIQEHLVS 37
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 28.3 bits (62), Expect = 1.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAV 265
+LL GPPG GK A +A + + ++
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQIST 31
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 28.0 bits (61), Expect = 1.7
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 237 LLLYGPPGTGKTLIAKAVA 255
++L G P GK A+ +
Sbjct: 3 IILLGAPVAGKGTQAQFIM 21
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 27.5 bits (60), Expect = 1.8
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 238 LLYGPPGTGKTL-IAKAVATECRMNFLAVKGPELLN 272
L+ P G+GK+ + A A + +
Sbjct: 12 HLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATL 47
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 28.0 bits (61), Expect = 2.0
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENI 282
+ + G PG GK + + +F+ + +LL G++
Sbjct: 11 IFVLGGPGAGKGTQCEKLVK--DYSFVHLSAGDLLRAEQGRAGSQY 54
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.4 bits (62), Expect = 2.1
Identities = 47/285 (16%), Positives = 93/285 (32%), Gaps = 31/285 (10%)
Query: 204 VSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKT-----LIAKAVATEC 258
VS + +++ KA+ + T GV + LL+ G GTGK+ L +
Sbjct: 21 VSGGKLKRMTREKAKQV-TVAGVPMPRDAEPRHLLVNGATGTGKSVLLRELAYTGLLRGD 79
Query: 259 RMNFLAVKGPELLNKYIGQSEENIR---------NVFLKARSAAPCVVFFDELDSLAPRR 309
RM + G ++L+K+ + + + F + R+ + +
Sbjct: 80 RMVIVDPNG-DMLSKFGRDKDIILNPYDQRTKGWSFFNEIRNDYDWQRYALSVVPRGKTD 138
Query: 310 GQEDQSSGVMDRVVSQLLA-EMDGVHTSQDVFILGATNRVDLLDPAILRPGRLDKSLYVG 368
E+ +S + + G + +++F D L + G L +SL+ G
Sbjct: 139 EAEEWASYGRLLLRETAKKLALIGTPSMRELFHWTTIATFDDLRGFL--EGTLAESLFAG 196
Query: 369 LYED---RISQLGVLKAVVRKFKLSDDVSLDS---------LVHHFPSQMSGADIYSICS 416
E S VL + + D +
Sbjct: 197 SNEASKALTSARFVLSDKLPEHVTMPDGDFSIRSWLEDPNGGNLFITWREDMGPALRPLI 256
Query: 417 NAWTRAIRRIITSAPQVKSAPVIVTMDDFLGACSLATAPDKFSQS 461
+AW + I S P+ + + +D+ LA+ D ++
Sbjct: 257 SAWVDVVCTSILSLPEEPKRRLWLFIDELASLEKLASLADALTKG 301
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 28.0 bits (61), Expect = 2.2
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 237 LLLYGPPGTGKTLIAKAVA 255
+ + G PG GK +
Sbjct: 4 VFVLGGPGAGKGTQCARIV 22
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 27.6 bits (60), Expect = 2.3
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 237 LLLYGPPGTGKTLIAKAVA 255
+ + G PG+GK +
Sbjct: 9 VFVLGGPGSGKGTQCANIV 27
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 27.6 bits (60), Expect = 2.3
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 237 LLLYGPPGTGKTLIAKAVA 255
+ + G PG+GK + +
Sbjct: 11 IFVVGGPGSGKGTQCEKIV 29
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 27.6 bits (60), Expect = 2.5
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKG 267
+++ G P GKT I+K + + +
Sbjct: 5 IVMVGLPARGKTYISKKLTRYLNFIGVPTRE 35
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 27.5 bits (60), Expect = 2.5
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 237 LLLYGPPGTGKTLIAKAVA 255
++L G PG GK A +
Sbjct: 3 IVLMGLPGAGKGTQADRIV 21
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 27.9 bits (61), Expect = 2.5
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 202 PNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKTLIAKAVATECRMN 261
N+++ L++ + L RG+ + L G +GK+ +A + + +
Sbjct: 2 TNITFHA-SALTRSERTELRNQRGLT---------IWLTGLSASGKSTLAVELEHQLVRD 51
Query: 262 F 262
Sbjct: 52 R 52
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 28.1 bits (62), Expect = 2.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 238 LLYGPPGTGKTLIAKAVA 255
+L G PG GKT I + +A
Sbjct: 47 VLIGEPGVGKTAIVEGLA 64
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 28.0 bits (61), Expect = 2.8
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 233 KRSGLLLYGPPGTGKTLIA 251
K+ ++ PG GKT
Sbjct: 8 KKRLTIMDLHPGAGKTKRY 26
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 27.6 bits (60), Expect = 2.8
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNFLAVKGPEL 270
LL GPPG GKT A A+A E EL
Sbjct: 48 LLFAGPPGVGKTTAALALARELFGENWRHNFLEL 81
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 27.2 bits (59), Expect = 3.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNF 262
+++ GP GTGK+ + K + E +F
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSF 29
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 27.0 bits (58), Expect = 3.9
Identities = 7/46 (15%), Positives = 19/46 (41%)
Query: 241 GPPGTGKTLIAKAVATECRMNFLAVKGPELLNKYIGQSEENIRNVF 286
G +GKT +A ++ R ++V + + + +++
Sbjct: 29 GLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNE 74
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 26.9 bits (58), Expect = 5.1
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 238 LLYGPPGTGKTLIAKAVATECRMNFLAV 265
++ G PG G T ++ R +
Sbjct: 5 VVTGVPGVGSTTSSQLAMDNLRKEGVNY 32
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 26.5 bits (57), Expect = 5.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 237 LLLYGPPGTGKTLIAKAVA 255
+++ G PG GKT + K +
Sbjct: 3 IIITGEPGVGKTTLVKKIV 21
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 26.5 bits (57), Expect = 5.8
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 238 LLYGPPGTGKTLIAKAVATECRMNFLAV 265
++ G PG GK+ + V +
Sbjct: 5 IVTGIPGVGKSTVLAKVKEILDNQGINN 32
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 26.4 bits (57), Expect = 6.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNF 262
++L GP G GK+ + K + E F
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQEHSSIF 28
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 26.7 bits (58), Expect = 6.9
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 5/66 (7%)
Query: 189 QSRYSDQLDAPSVPNVSWEDIGGLSKLKAEILSTFRGVNRTSGLKRSGLLLYGPPGTGKT 248
+ +L +VP ++ L L L+G G+GK+
Sbjct: 4 RQMLDRKLLLGNVPKQM--TCYIREYHVDRVIKKLD---EMCDLDSFFLFLHGRAGSGKS 58
Query: 249 LIAKAV 254
+IA
Sbjct: 59 VIASQA 64
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 25.9 bits (55), Expect = 8.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 232 LKRSGLLLYGPPGTGKTLIA 251
K + L+ P G GKTLIA
Sbjct: 21 CKETNCLIVLPTGLGKTLIA 40
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 25.6 bits (55), Expect = 9.9
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 237 LLLYGPPGTGKTLIAKAVATECRMNF 262
L+L G G G+ I + T+ F
Sbjct: 6 LVLLGAHGVGRRHIKNTLITKHPDRF 31
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.392
Gapped
Lambda K H
0.267 0.0444 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,711,870
Number of extensions: 80367
Number of successful extensions: 351
Number of sequences better than 10.0: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 92
Length of query: 478
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 389
Effective length of database: 1,185,626
Effective search space: 461208514
Effective search space used: 461208514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.7 bits)