BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4503
         (447 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A7MUT5|RSMC_VIBHB Ribosomal RNA small subunit methyltransferase C OS=Vibrio harveyi
           (strain ATCC BAA-1116 / BB120) GN=rsmC PE=3 SV=1
          Length = 341

 Score = 32.7 bits (73), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 17/115 (14%)

Query: 335 PQNSATELTAKVFTLGATELTAK----VFTLGATELTAKVFTLGATELTAKVFTLGA--- 387
           P N A    +   TLG   LT K    VF+ G  +L +++      +L+ KV   G    
Sbjct: 153 PFNQADWFKSYEITLGEQSLTVKSLPGVFSHGEFDLGSRLLLETLPKLSGKVLDFGCGAG 212

Query: 388 ----------TELTAKVFTLGATELTAKVFTLGATELTAKVFTLGATELTAKNIR 432
                      E+  ++  + A  +T+   TL A  L+ +VF       TAK+ R
Sbjct: 213 VLGAFMAKANPEIAIEMCDINAYAITSSQATLEANGLSGRVFASDIYSDTAKDYR 267


>sp|Q6P6S4|SIL1_RAT Nucleotide exchange factor SIL1 OS=Rattus norvegicus GN=Sil1 PE=2
           SV=1
          Length = 465

 Score = 32.3 bits (72), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 9/116 (7%)

Query: 292 LTAKVFTLGATELTAKVFTLGATELTAKSVILEVEYYKPIKIVP---QNSATELTAKVFT 348
           L  +V TL    +T K+F     ELT +S   +++ Y+ ++++P   +    E+TA++  
Sbjct: 332 LAVRVVTLLYDLVTEKMFAEEEAELTQESSPEKLQQYRQVQLLPGLREQGWCEITAQLLA 391

Query: 349 LGATELTAKVF-TLGATELTAKVFTLGATELTAKVFTLGATELTAKVFTLGATELT 403
           L   +   KV  TLGA   T +       EL+    TLG+  L A+   L + EL 
Sbjct: 392 LPEHDAREKVLQTLGALLATCRDRYRQDLELSR---TLGS--LQAEYQALASLELQ 442


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.127    0.330 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,298,015
Number of Sequences: 539616
Number of extensions: 3609240
Number of successful extensions: 10762
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 10154
Number of HSP's gapped (non-prelim): 195
length of query: 447
length of database: 191,569,459
effective HSP length: 121
effective length of query: 326
effective length of database: 126,275,923
effective search space: 41165950898
effective search space used: 41165950898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)