Query psy4503
Match_columns 447
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 46136
Date Fri Aug 16 18:51:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14717 putative glycine/sarc 9.3 2.1E+02 0.0046 25.0 1.8 30 418-447 22-51 (107)
2 PF06713 bPH_4: Bacterial PH d 8.0 3.1E+02 0.0068 20.6 2.1 21 319-339 44-64 (74)
3 PF07407 Seadorna_VP6: Seadorn 8.0 2.7E+02 0.0059 28.7 2.2 26 309-334 267-294 (420)
4 PRK13265 glycine/sarcosine/bet 5.9 3.7E+02 0.0081 24.7 1.8 30 418-447 71-100 (154)
5 PF10528 PA14_2: GLEYA domain; 5.0 2.8E+02 0.006 22.9 0.4 21 319-339 62-82 (113)
6 PF15374 CCDC71L: Coiled-coil 4.6 3.8E+02 0.0083 27.4 1.1 15 432-446 147-161 (376)
7 cd06463 p23_like Proteins cont 4.6 9.5E+02 0.021 16.1 2.8 21 319-341 41-61 (84)
8 cd00237 p23 p23 binds heat sho 4.4 1.2E+03 0.026 18.8 3.7 20 321-342 46-65 (106)
9 PF04723 GRDA: Glycine reducta 4.4 4.7E+02 0.01 24.0 1.4 30 418-447 70-99 (150)
10 cd06469 p23_DYX1C1_like p23_li 4.3 1.2E+03 0.025 16.4 3.2 23 319-343 36-58 (78)
No 1
>PRK14717 putative glycine/sarcosine/betaine reductase complex protein A; Provisional
Probab=9.30 E-value=2.1e+02 Score=25.00 Aligned_cols=30 Identities=43% Similarity=0.593 Sum_probs=26.6
Q ss_pred EEeeccceecccccccCccccCCCCCCCCC
Q psy4503 418 VFTLGATELTAKNIRSNTGTVGSPTHMSPL 447 (447)
Q Consensus 418 vftlgateltaknirsntgtvgspthmspl 447 (447)
|.-||+.|--+..|...|=|.|.||.-.||
T Consensus 22 vV~lG~aeaEaaglaAETVt~GDPTfAGPL 51 (107)
T PRK14717 22 VVILGAAEAEAAGLAAETVTNGDPTFAGPL 51 (107)
T ss_pred EEEecCcchhhccceeeeeccCCCcccccc
Confidence 567889999999999999999999998886
No 2
>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.
Probab=8.05 E-value=3.1e+02 Score=20.64 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=13.3
Q ss_pred eeEEEEEEEeeeeeeeecCCc
Q psy4503 319 KSVILEVEYYKPIKIVPQNSA 339 (447)
Q Consensus 319 ksvileveyykpikivpqnsa 339 (447)
+.+.++-.-|+.|.|.|+|..
T Consensus 44 ~rl~I~y~~~~~i~IsP~~~~ 64 (74)
T PF06713_consen 44 DRLEIYYGKYKSILISPKDKE 64 (74)
T ss_pred cEEEEEECCCCEEEEECCCHH
Confidence 444444333488999999853
No 3
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=8.00 E-value=2.7e+02 Score=28.67 Aligned_cols=26 Identities=31% Similarity=0.657 Sum_probs=16.8
Q ss_pred EeecceeeeeeeEEEEE--EEeeeeeee
Q psy4503 309 FTLGATELTAKSVILEV--EYYKPIKIV 334 (447)
Q Consensus 309 ftlgateltaksvilev--eyykpikiv 334 (447)
+-.|+.=--+.|-++|| .||||+|..
T Consensus 267 YHVG~acR~~EcSVvev~gr~yKP~kc~ 294 (420)
T PF07407_consen 267 YHVGNACRITECSVVEVEGRYYKPLKCS 294 (420)
T ss_pred eeecccceeecceEEEEcCeeccceeec
Confidence 44555444455666666 599999953
No 4
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=5.86 E-value=3.7e+02 Score=24.72 Aligned_cols=30 Identities=43% Similarity=0.593 Sum_probs=26.6
Q ss_pred EEeeccceecccccccCccccCCCCCCCCC
Q psy4503 418 VFTLGATELTAKNIRSNTGTVGSPTHMSPL 447 (447)
Q Consensus 418 vftlgateltaknirsntgtvgspthmspl 447 (447)
|.-||+.|--+..|...|=+.|.||.--||
T Consensus 71 vVllGaaeaEaaglaAETVt~GDPTfAGPL 100 (154)
T PRK13265 71 VVILGAAEAEAAGLAAETVTNGDPTFAGPL 100 (154)
T ss_pred EEEecccchhhccceeeeeccCCCcccccc
Confidence 567889998899999999999999998886
No 5
>PF10528 PA14_2: GLEYA domain; InterPro: IPR018871 This presumed domain is found in fungal adhesins and is related to the PA14 domain. ; PDB: 4A3X_A.
Probab=5.02 E-value=2.8e+02 Score=22.89 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=14.4
Q ss_pred eeEEEEEEEeeeeeeeecCCc
Q psy4503 319 KSVILEVEYYKPIKIVPQNSA 339 (447)
Q Consensus 319 ksvileveyykpikivpqnsa 339 (447)
-+|-|+.-.|-||+|+-.|..
T Consensus 62 ~tv~L~aG~yyPiRi~~~N~~ 82 (113)
T PF10528_consen 62 VTVYLTAGTYYPIRIVYANGG 82 (113)
T ss_dssp EEEEE-TT-BEEEEEEEEE-S
T ss_pred EEEEEECCcEEEEEEEEEcCC
Confidence 456677778999999988764
No 6
>PF15374 CCDC71L: Coiled-coil domain-containing protein 71L
Probab=4.56 E-value=3.8e+02 Score=27.37 Aligned_cols=15 Identities=47% Similarity=0.758 Sum_probs=12.9
Q ss_pred ccCccccCCCCCCCC
Q psy4503 432 RSNTGTVGSPTHMSP 446 (447)
Q Consensus 432 rsntgtvgspthmsp 446 (447)
+|+.-+||-|+||-|
T Consensus 147 ~s~~~~~gfP~~~yp 161 (376)
T PF15374_consen 147 TSRGATVGFPAHLYP 161 (376)
T ss_pred ccCCcccccccccCC
Confidence 567788999999988
No 7
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=4.55 E-value=9.5e+02 Score=16.11 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=13.2
Q ss_pred eeEEEEEEEeeeeeeeecCCcce
Q psy4503 319 KSVILEVEYYKPIKIVPQNSATE 341 (447)
Q Consensus 319 ksvileveyykpikivpqnsate 341 (447)
+...++++.|.||+ |+.|.-.
T Consensus 41 ~~~~~~~~L~~~I~--~~~s~~~ 61 (84)
T cd06463 41 KEYLLEGELFGPID--PEESKWT 61 (84)
T ss_pred CceEEeeEccCccc--hhhcEEE
Confidence 44677888888875 5544433
No 8
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=4.41 E-value=1.2e+03 Score=18.81 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=14.8
Q ss_pred EEEEEEEeeeeeeeecCCccee
Q psy4503 321 VILEVEYYKPIKIVPQNSATEL 342 (447)
Q Consensus 321 vileveyykpikivpqnsatel 342 (447)
..+++++|+|| +|.+|-...
T Consensus 46 y~~~l~l~~~I--~pe~Sk~~v 65 (106)
T cd00237 46 IYNEIELYDRV--DPNDSKHKR 65 (106)
T ss_pred EEEEEEeeccc--CcccCeEEe
Confidence 55788999997 577776554
No 9
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=4.40 E-value=4.7e+02 Score=24.03 Aligned_cols=30 Identities=43% Similarity=0.599 Sum_probs=26.7
Q ss_pred EEeeccceecccccccCccccCCCCCCCCC
Q psy4503 418 VFTLGATELTAKNIRSNTGTVGSPTHMSPL 447 (447)
Q Consensus 418 vftlgateltaknirsntgtvgspthmspl 447 (447)
|.-||+.|--+..|...|-+.|.||.-.||
T Consensus 70 vVvlG~aeaE~a~laAETVt~GDPTfaGPL 99 (150)
T PF04723_consen 70 VVVLGAAEAEAAGLAAETVTNGDPTFAGPL 99 (150)
T ss_pred EEEecCCChhhhhhhhhhhccCCCcccccc
Confidence 567899999999999999999999998886
No 10
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=4.33 E-value=1.2e+03 Score=16.37 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=14.9
Q ss_pred eeEEEEEEEeeeeeeeecCCcceee
Q psy4503 319 KSVILEVEYYKPIKIVPQNSATELT 343 (447)
Q Consensus 319 ksvileveyykpikivpqnsatelt 343 (447)
++..++++.|.|| .|++|...+.
T Consensus 36 ~~~~~~~~l~~~I--~~e~~~~~~~ 58 (78)
T cd06469 36 PPYLFELDLAAPI--DDEKSSAKIG 58 (78)
T ss_pred CCEEEEEeCcccc--cccccEEEEe
Confidence 4566777888876 5777654443
Done!