Query psy4503
Match_columns 447
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 29240
Date Fri Aug 16 18:51:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4503.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4503hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g31_A Eukaryotic translation 5.8 1.4E+02 0.0047 25.3 0.3 13 434-446 187-199 (299)
2 3bjk_A Acyl-COA thioester hydr 5.6 8.3E+02 0.028 17.4 4.5 29 322-353 63-91 (153)
3 1yc6_A Coat protein; structura 5.5 3.6E+02 0.012 23.5 2.7 34 298-332 110-145 (154)
4 1cwp_A Coat protein, CCMV; bro 4.2 4E+02 0.014 23.9 2.1 35 298-332 146-182 (190)
5 3ubd_A Ribosomal protein S6 ki 3.9 3.2E+02 0.011 23.7 1.2 13 434-446 183-195 (304)
6 1nlq_A Nucleoplasmin-like prot 3.6 9.7E+02 0.033 18.9 3.8 30 304-333 32-62 (108)
7 4fih_A Serine/threonine-protei 3.4 4E+02 0.014 23.6 1.5 13 434-446 227-239 (346)
8 1za7_A Coat protein; mutant vi 3.3 4.1E+02 0.014 23.4 1.3 34 298-331 121-156 (165)
9 1js9_A Coat protein, capsid pr 3.0 3.1E+02 0.011 24.6 0.2 34 298-332 145-180 (189)
10 1ugi_A UGI, uracil-DNA glycosy 2.9 7.1E+02 0.024 19.6 2.2 19 327-345 64-82 (84)
No 1
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=5.82 E-value=1.4e+02 Score=25.34 Aligned_cols=13 Identities=54% Similarity=0.815 Sum_probs=7.7
Q ss_pred CccccCCCCCCCC
Q psy4503 434 NTGTVGSPTHMSP 446 (447)
Q Consensus 434 ntgtvgspthmsp 446 (447)
.++.+|+|.+|+|
T Consensus 187 ~~~~~GT~~YmAP 199 (299)
T 4g31_A 187 HTGQVGTKLYMSP 199 (299)
T ss_dssp -----CCCTTSCH
T ss_pred cCCcccCccccCH
Confidence 4567899999998
No 2
>3bjk_A Acyl-COA thioester hydrolase HI0827; hotdog fold, trimer of dimers, YCIA, structural GENO structure 2 function project, S2F; HET: CIT; 1.90A {Haemophilus influenzae rd KW20} PDB: 1yli_A*
Probab=5.62 E-value=8.3e+02 Score=17.38 Aligned_cols=29 Identities=14% Similarity=0.387 Sum_probs=18.2
Q ss_pred EEEEEEeeeeeeeecCCcceeeEEEEeeccce
Q psy4503 322 ILEVEYYKPIKIVPQNSATELTAKVFTLGATE 353 (447)
Q Consensus 322 ileveyykpikivpqnsateltakvftlgate 353 (447)
..++.|.+|+++ +..-++.+++--+|.+-
T Consensus 63 ~~~i~f~~pv~~---gd~l~v~~~v~~~g~~s 91 (153)
T 3bjk_A 63 VESMNFIKPISV---GDVVCCYGQCLKVGRSS 91 (153)
T ss_dssp EEEEEECSCCCT---TCEEEEEEEEEEECSSE
T ss_pred EeeEEEeCCccC---CCEEEEEEEEEEecCcE
Confidence 458999999853 44445555665555443
No 3
>1yc6_A Coat protein; structural transition, proteolysis, BMV, ALMV, symmetry, ASS icosahedral virus; 2.90A {Brome mosaic virus} SCOP: b.121.4.5
Probab=5.49 E-value=3.6e+02 Score=23.55 Aligned_cols=34 Identities=32% Similarity=0.498 Sum_probs=24.1
Q ss_pred eeccceeeeEEEeecceeeeeeeEE--EEEEEeeeee
Q psy4503 298 TLGATELTAKVFTLGATELTAKSVI--LEVEYYKPIK 332 (447)
Q Consensus 298 tlgateltakvftlgateltaksvi--leveyykpik 332 (447)
|||--+ .-+++-..+.-+.||+|+ ||||.-+|.-
T Consensus 110 tle~l~-dL~IYlYs~~a~aa~~ivVhlEVEHv~P~f 145 (154)
T 1yc6_A 110 TLGDLL-NLQIYLYASEAVPAKAVVVHLEVEHVRPTF 145 (154)
T ss_dssp BTTGGG-GEEEEEEESSCBCTTSEEEEEEEEEECCCC
T ss_pred cHhhhc-ceEEEEEehhhcccCceEEEEEEEecccch
Confidence 455544 455666667778888876 7999988863
No 4
>1cwp_A Coat protein, CCMV; bromovirus, icosahedral virus, virus/RNA complex; 3.20A {Cowpea chlorotic mottle virus} SCOP: b.121.4.5
Probab=4.20 E-value=4e+02 Score=23.89 Aligned_cols=35 Identities=31% Similarity=0.400 Sum_probs=23.5
Q ss_pred eeccceeeeEEEeecceeeeeeeEE--EEEEEeeeee
Q psy4503 298 TLGATELTAKVFTLGATELTAKSVI--LEVEYYKPIK 332 (447)
Q Consensus 298 tlgateltakvftlgateltaksvi--leveyykpik 332 (447)
|||--+-.-+++-..+..+.||+|+ ||||.-+|.-
T Consensus 146 tle~l~~dL~IYlYs~~a~aa~~ivvhlEVEHv~P~f 182 (190)
T 1cwp_A 146 TLEQLAADLTIYLYSSAALTEGDVIVHLEVEHVRPTF 182 (190)
T ss_dssp BHHHHHHHEEEEEEESSCCCEEEEEEEEEEEEECCSG
T ss_pred cHHHHhhccEEEEEehhhcccCceEEEEEEeecccch
Confidence 4444443445566667778888876 7999988853
No 5
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=3.93 E-value=3.2e+02 Score=23.68 Aligned_cols=13 Identities=23% Similarity=0.335 Sum_probs=10.5
Q ss_pred CccccCCCCCCCC
Q psy4503 434 NTGTVGSPTHMSP 446 (447)
Q Consensus 434 ntgtvgspthmsp 446 (447)
....+|+|.+|+|
T Consensus 183 ~~~~~GT~~YmAP 195 (304)
T 3ubd_A 183 AYSFCGTVEYMAP 195 (304)
T ss_dssp CCSCCCCGGGCCH
T ss_pred ccccccCcccCCH
Confidence 3456899999998
No 6
>1nlq_A Nucleoplasmin-like protein; DNLP, chaperone, histone binding, X-RAY crystallography, ligand binding; 1.50A {Drosophila melanogaster} SCOP: b.121.3.1
Probab=3.62 E-value=9.7e+02 Score=18.85 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=16.1
Q ss_pred eeeEEEeecceeeeeeeEEEEEEEe-eeeee
Q psy4503 304 LTAKVFTLGATELTAKSVILEVEYY-KPIKI 333 (447)
Q Consensus 304 ltakvftlgateltaksvileveyy-kpiki 333 (447)
|.-+-..||+.--.-...|+|++.| +|||+
T Consensus 32 L~L~~a~LG~~aK~dE~~vVev~~~~~~~kv 62 (108)
T 1nlq_A 32 LVIKQILLGAEAKENEFNVVEVNTPKDSVQI 62 (108)
T ss_dssp EEEEEEEECTTSCBTCEEEEEEEEGGGTEEE
T ss_pred EEEEEEEcCCCccCCCcEEEEEEeCCCCcEE
Confidence 3444555654311123467888875 46665
No 7
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=3.40 E-value=4e+02 Score=23.64 Aligned_cols=13 Identities=38% Similarity=0.741 Sum_probs=10.7
Q ss_pred CccccCCCCCCCC
Q psy4503 434 NTGTVGSPTHMSP 446 (447)
Q Consensus 434 ntgtvgspthmsp 446 (447)
.+..+|+|.+|+|
T Consensus 227 ~~~~~GTp~YmAP 239 (346)
T 4fih_A 227 RKSLVGTPYWMAP 239 (346)
T ss_dssp BCCCCSCGGGCCH
T ss_pred ccccccCcCcCCH
Confidence 3457899999998
No 8
>1za7_A Coat protein; mutant virus capsid structure, icosahedral particle, stablizing mutation, stable mutant, beta hexamer, beta barrel; 2.70A {Cowpea chlorotic mottle virus}
Probab=3.28 E-value=4.1e+02 Score=23.40 Aligned_cols=34 Identities=32% Similarity=0.444 Sum_probs=23.1
Q ss_pred eeccceeeeEEEeecceeeeeeeEE--EEEEEeeee
Q psy4503 298 TLGATELTAKVFTLGATELTAKSVI--LEVEYYKPI 331 (447)
Q Consensus 298 tlgateltakvftlgateltaksvi--leveyykpi 331 (447)
|||--+-.-+++-..+.-+.||+|+ ||||.-+|.
T Consensus 121 tle~l~~dL~IYlYs~~a~aa~~ivVhlEVEHv~P~ 156 (165)
T 1za7_A 121 TLEQLAADLTIYLYSSAALTEGDVIVHLEVEHVRPT 156 (165)
T ss_dssp BHHHHHHHEEEEEEESSCBCTTSEEEEEEEEEECCG
T ss_pred cHHHHhhccEEEEEehhhcccCceEEEEEEeecccc
Confidence 4444443445566667778888876 789998885
No 9
>1js9_A Coat protein, capsid protein; plant virus, bromoviruses, BMV icosahedral virus; 3.40A {Brome mosaic virus} SCOP: b.121.4.5
Probab=2.97 E-value=3.1e+02 Score=24.58 Aligned_cols=34 Identities=32% Similarity=0.498 Sum_probs=23.7
Q ss_pred eeccceeeeEEEeecceeeeeeeEE--EEEEEeeeee
Q psy4503 298 TLGATELTAKVFTLGATELTAKSVI--LEVEYYKPIK 332 (447)
Q Consensus 298 tlgateltakvftlgateltaksvi--leveyykpik 332 (447)
|||--+ .-+++-..+..+.||+|+ ||||.-+|.-
T Consensus 145 tle~l~-dL~IYlYs~~a~aa~~ivvhlEVEHv~P~f 180 (189)
T 1js9_A 145 TLGDLL-NLQIYLYASEAVPAKAVVVHLEVEHVRPTF 180 (189)
T ss_dssp BTTTTT-SCCEEEECSSCBCTTSBCCEEEEEEECCSG
T ss_pred cHhhhc-ceEEEEEehhhcccCceEEEEEEeecccch
Confidence 455544 445666667778888865 7999998853
No 10
>1ugi_A UGI, uracil-DNA glycosylase inhibitor; protein mimicry of DNA, protein inhibitor, hydrolase inhibitor; 1.55A {Bacillus phage PBS2} SCOP: d.17.5.1 PDB: 1eui_C 1lqm_B 1lqg_C 1uug_B 2j8x_B 2ugi_A 2uug_C 2zhx_B 1udi_I 1ugh_I
Probab=2.90 E-value=7.1e+02 Score=19.62 Aligned_cols=19 Identities=42% Similarity=0.459 Sum_probs=15.6
Q ss_pred EeeeeeeeecCCcceeeEE
Q psy4503 327 YYKPIKIVPQNSATELTAK 345 (447)
Q Consensus 327 yykpikivpqnsateltak 345 (447)
-|||-..|-|+|.-|-.-|
T Consensus 64 eykpwalviqdsngenkik 82 (84)
T 1ugi_A 64 EYKPWALVIQDSNGENKIK 82 (84)
T ss_dssp TCCEEEEEEECTTCCEEEE
T ss_pred ccCceEEEEEcCCCcceee
Confidence 4999999999998876544
Done!