Query psy4503
Match_columns 447
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Fri Aug 16 18:51:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4503.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4503hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d5ya3 d.60.1.2 (A:122-294) R 10.7 58 0.0042 23.2 2.0 11 322-332 157-167 (173)
2 d1csna_ d.144.1.7 (A:) Casein 6.5 74 0.0054 24.3 1.0 16 431-446 167-182 (293)
3 d1ua2a_ d.144.1.7 (A:) Cell di 5.7 1E+02 0.0076 23.1 1.5 31 416-446 139-169 (299)
4 d1cwpa_ b.121.4.5 (A:) Cucumov 5.4 1.4E+02 0.01 24.0 2.1 35 297-331 104-140 (149)
5 d1nvra_ d.144.1.7 (A:) Cell cy 4.7 1.1E+02 0.0083 23.4 1.1 14 433-446 161-174 (271)
6 d1sm2a_ d.144.1.7 (A:) Tyrosin 3.8 1.3E+02 0.0092 22.5 0.6 17 430-446 155-171 (263)
7 d2java1 d.144.1.7 (A:3-271) Se 3.7 90 0.0065 23.8 -0.3 31 416-446 153-183 (269)
8 d1t4ha_ d.144.1.7 (A:) Protein 3.3 2.1E+02 0.015 21.6 1.6 11 436-446 172-182 (270)
9 d1ugia_ d.17.5.1 (A:) Uracil-D 2.9 3.3E+02 0.024 19.6 2.2 19 327-345 63-81 (83)
10 d1yhwa1 d.144.1.7 (A:249-541) 2.9 2.3E+02 0.017 21.8 1.5 14 433-446 172-185 (293)
No 1
>d1d5ya3 d.60.1.2 (A:122-294) Rob transcription factor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.71 E-value=58 Score=23.24 Aligned_cols=11 Identities=36% Similarity=0.528 Sum_probs=9.5
Q ss_pred EEEEEEeeeee
Q psy4503 322 ILEVEYYKPIK 332 (447)
Q Consensus 322 ileveyykpik 332 (447)
.+++|||-|||
T Consensus 157 ~~~~e~~IPIk 167 (173)
T d1d5ya3 157 NLRCELLIPIR 167 (173)
T ss_dssp EEEEEEEEEEE
T ss_pred cEEEEEEEEEE
Confidence 46899999998
No 2
>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=6.48 E-value=74 Score=24.31 Aligned_cols=16 Identities=25% Similarity=0.275 Sum_probs=12.5
Q ss_pred cccCccccCCCCCCCC
Q psy4503 431 IRSNTGTVGSPTHMSP 446 (447)
Q Consensus 431 irsntgtvgspthmsp 446 (447)
.++....+|+|-+|||
T Consensus 167 ~~~~~~~~GT~~y~aP 182 (293)
T d1csna_ 167 YREKKNLSGTARYMSI 182 (293)
T ss_dssp CCCCCCCCSCTTTCCH
T ss_pred ecccCceEEchhhcCH
Confidence 3455667899999998
No 3
>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.75 E-value=1e+02 Score=23.13 Aligned_cols=31 Identities=19% Similarity=0.118 Sum_probs=20.8
Q ss_pred eEEEeeccceecccccccCccccCCCCCCCC
Q psy4503 416 AKVFTLGATELTAKNIRSNTGTVGSPTHMSP 446 (447)
Q Consensus 416 akvftlgateltaknirsntgtvgspthmsp 446 (447)
.|+.-.|.......+.++....+|+|.+|+|
T Consensus 139 ~KL~DFG~a~~~~~~~~~~~~~~gt~~y~aP 169 (299)
T d1ua2a_ 139 LKLADFGLAKSFGSPNRAYTHQVVTRWYRAP 169 (299)
T ss_dssp EEECCCGGGSTTTSCCCCCCCSCCCCTTCCH
T ss_pred cccccCccccccCCCcccccceecChhhccH
Confidence 3555555554444555666678899999988
No 4
>d1cwpa_ b.121.4.5 (A:) Cucumovirus coat protein {Cowpea chlorotic mottle virus [TaxId: 12303]}
Probab=5.42 E-value=1.4e+02 Score=23.97 Aligned_cols=35 Identities=31% Similarity=0.441 Sum_probs=24.3
Q ss_pred EeeccceeeeEEEeecceeeeeeeEE--EEEEEeeee
Q psy4503 297 FTLGATELTAKVFTLGATELTAKSVI--LEVEYYKPI 331 (447)
Q Consensus 297 ftlgateltakvftlgateltaksvi--leveyykpi 331 (447)
.|||--+..-+++-....-+++++|+ ||||.-+|.
T Consensus 104 itLeql~~dL~IYLYs~~al~a~~vvvhlEVEHv~Pt 140 (149)
T d1cwpa_ 104 ITLEQLAADLTIYLYSSAALTEGDVIVHLEVEHVRPT 140 (149)
T ss_dssp CBHHHHHHHEEEEEEESSCCCEEEEEEEEEEEEECCS
T ss_pred cCHHHHhcccEEEEEehhhcccCcEEEEEEEEecccc
Confidence 35555555555666666678888876 689998885
No 5
>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.68 E-value=1.1e+02 Score=23.39 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=11.6
Q ss_pred cCccccCCCCCCCC
Q psy4503 433 SNTGTVGSPTHMSP 446 (447)
Q Consensus 433 sntgtvgspthmsp 446 (447)
..+..+|+|.+|+|
T Consensus 161 ~~~~~~GT~~Y~AP 174 (271)
T d1nvra_ 161 LLNKMCGTLPYVAP 174 (271)
T ss_dssp CBCCCCSCGGGSCT
T ss_pred cccceeeCcCccCH
Confidence 45567899999999
No 6
>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.76 E-value=1.3e+02 Score=22.52 Aligned_cols=17 Identities=35% Similarity=0.288 Sum_probs=6.4
Q ss_pred ccccCccccCCCCCCCC
Q psy4503 430 NIRSNTGTVGSPTHMSP 446 (447)
Q Consensus 430 nirsntgtvgspthmsp 446 (447)
+..++.+..|+|.+|+|
T Consensus 155 ~~~~~~~~~gt~~y~aP 171 (263)
T d1sm2a_ 155 QYTSSTGTKFPVKWASP 171 (263)
T ss_dssp ----------CTTSCCH
T ss_pred CceeecceecCcccCCh
Confidence 34456677899999988
No 7
>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.74 E-value=90 Score=23.83 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=11.9
Q ss_pred eEEEeeccceecccccccCccccCCCCCCCC
Q psy4503 416 AKVFTLGATELTAKNIRSNTGTVGSPTHMSP 446 (447)
Q Consensus 416 akvftlgateltaknirsntgtvgspthmsp 446 (447)
.|+--.|-...-..+.+.....+|+|.+|+|
T Consensus 153 vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~AP 183 (269)
T d2java1 153 VKLGDFGLARILNHDTSFAKAFVGTPYYMSP 183 (269)
T ss_dssp EEECCHHHHHHC-----------CCCSCCCH
T ss_pred EEEeeccceeecccCCCccccCCCCcccCCH
Confidence 3444444333222333444567899999998
No 8
>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.26 E-value=2.1e+02 Score=21.63 Aligned_cols=11 Identities=36% Similarity=0.972 Sum_probs=9.5
Q ss_pred cccCCCCCCCC
Q psy4503 436 GTVGSPTHMSP 446 (447)
Q Consensus 436 gtvgspthmsp 446 (447)
..+|+|.+|+|
T Consensus 172 ~~~GT~~Y~aP 182 (270)
T d1t4ha_ 172 AVIGTPEFMAP 182 (270)
T ss_dssp ESCSSCCCCCG
T ss_pred CcccCccccCH
Confidence 56899999998
No 9
>d1ugia_ d.17.5.1 (A:) Uracil-DNA glycosylase inhibitor protein {Bacteriophage pbs2 [TaxId: 10684]}
Probab=2.92 E-value=3.3e+02 Score=19.61 Aligned_cols=19 Identities=42% Similarity=0.459 Sum_probs=15.6
Q ss_pred EeeeeeeeecCCcceeeEE
Q psy4503 327 YYKPIKIVPQNSATELTAK 345 (447)
Q Consensus 327 yykpikivpqnsateltak 345 (447)
-|||-..|-|+|.-|-.-|
T Consensus 63 eykpwalviqdsngenkik 81 (83)
T d1ugia_ 63 EYKPWALVIQDSNGENKIK 81 (83)
T ss_dssp TCCEEEEEEECTTCCEEEE
T ss_pred ccCceEEEEEcCCCcceee
Confidence 4999999999998876544
No 10
>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.90 E-value=2.3e+02 Score=21.78 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=10.7
Q ss_pred cCccccCCCCCCCC
Q psy4503 433 SNTGTVGSPTHMSP 446 (447)
Q Consensus 433 sntgtvgspthmsp 446 (447)
.....+|+|.+|+|
T Consensus 172 ~~~~~~gt~~Y~aP 185 (293)
T d1yhwa1 172 KRSTMVGTPYWMAP 185 (293)
T ss_dssp CBCCCCSCGGGCCH
T ss_pred cccccccCCCccCh
Confidence 34556899999988
Done!