RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4503
         (447 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 52.4 bits (125), Expect = 3e-07
 Identities = 73/367 (19%), Positives = 119/367 (32%), Gaps = 88/367 (23%)

Query: 129 FTL--GATELTAKVFT---LGATELTAKVF--TLGA-TELTAKVFTLGATELTAKVFTLG 180
            TL  G+ E    V T     A++L  + F   L   TE  A        E T       
Sbjct: 9   LTLSHGSLEHVLLVPTASFFIASQLQEQ-FNKILPEPTEGFA-----ADDEPTTPA---- 58

Query: 181 ATELTAKVFTLGATELTAKVFTLGATELTAKVFTLGATELTAKVFTLGATELTAKVFTLG 240
             EL  K F LG     + +          +V  L  TE       L   ++ A    L 
Sbjct: 59  --ELVGK-F-LG---YVSSLVEPSKVGQFDQVLNLCLTEFENCY--LEGNDIHALAAKLL 109

Query: 241 ATELTAKVFTLGATELTAKVFTLGATELTAKVFT------L--GATELTAKVFTL----G 288
               T    TL  T+   K + + A  +  + F       L     E  A++  +    G
Sbjct: 110 QENDT----TLVKTKELIKNY-ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164

Query: 289 AT-----ELTAKVFTLGATELTAKVFTLGAT--ELTAKSVILEVEYYKPIKIV-----PQ 336
            T     EL   ++      +   +     T  EL   ++  E  + + + I+     P 
Sbjct: 165 NTDDYFEEL-RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223

Query: 337 NSATE---LTAKV-FTL-GATEL-----TAKVFTLGATELTAKVFTLGATELTAKVFTLG 386
           N+  +   L+  +   L G  +L     TAK+      EL + +   GAT  +  +    
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL--KGATGHSQGL---- 277

Query: 387 ATELTAKVFTLGATELTAKVFTLGATELTAKVFTLGA--------TELTAKNIR-SNTGT 437
              +TA      A   + + F +   +    +F +G         T L    +  S    
Sbjct: 278 ---VTAVAI---AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331

Query: 438 VGSPTHM 444
            G P+ M
Sbjct: 332 EGVPSPM 338



 Score = 33.5 bits (76), Expect = 0.18
 Identities = 33/146 (22%), Positives = 48/146 (32%), Gaps = 37/146 (25%)

Query: 326  EYYKPIKIVPQNSATELTAKVFTLGATELTAKVFTLGATELTAKVFT---LGATELTA-- 380
            E Y  +           T K+F       T+  F      L+A  FT   L   E  A  
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE 1745

Query: 381  -----------KVF---TLGATELTAKVFTLGATELTAKVFTLGAT-ELTAKVFTLGATE 425
                         F   +LG  E  A    L +    A V ++ +  E+   VF  G T 
Sbjct: 1746 DLKSKGLIPADATFAGHSLG--EYAA----LAS---LADVMSIESLVEV---VFYRGMTM 1793

Query: 426  LTA----KNIRSNTGTVG-SPTHMSP 446
              A    +  RSN G +  +P  ++ 
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAA 1819


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.127    0.330 

Gapped
Lambda     K      H
   0.267   0.0377    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,590,244
Number of extensions: 346201
Number of successful extensions: 694
Number of sequences better than 10.0: 1
Number of HSP's gapped: 665
Number of HSP's successfully gapped: 20
Length of query: 447
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 350
Effective length of database: 3,993,456
Effective search space: 1397709600
Effective search space used: 1397709600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.5 bits)