BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4504
(219 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P20350|RHOM_DROME Protein rhomboid OS=Drosophila melanogaster GN=rho PE=1 SV=2
Length = 355
Score = 154 bits (388), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 79/130 (60%), Positives = 101/130 (77%), Gaps = 1/130 (0%)
Query: 81 GSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVGFA 140
GSLGTSV+DS+V+LVGASGGVYALLAAHLAN+ LNY M+ +L ++ + S D+G+A
Sbjct: 200 GSLGTSVVDSEVFLVGASGGVYALLAAHLANITLNYAHMKSASTQLGSVVIFVSCDLGYA 259
Query: 141 VYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVYVA 200
+Y +Y A A G VSY+AHLTGALAGLTIG LVLKNF + EQL+WW+ALGVY A
Sbjct: 260 LYTQYFDGSAFA-KGPQVSYIAHLTGALAGLTIGFLVLKNFGHREYEQLIWWLALGVYCA 318
Query: 201 CTIFAVIYNV 210
T+FA+++N+
Sbjct: 319 FTVFAIVFNL 328
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 42/52 (80%), Gaps = 2/52 (3%)
Query: 8 SLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRL--LAIFV 57
SLGTSV+DS+V+LVGASGGVYALLAAHLAN+ LNY M+ +L + IFV
Sbjct: 201 SLGTSVVDSEVFLVGASGGVYALLAAHLANITLNYAHMKSASTQLGSVVIFV 252
>sp|A2AGA4|RHBL2_MOUSE Rhomboid-related protein 2 OS=Mus musculus GN=Rhbdl2 PE=1 SV=1
Length = 302
Score = 117 bits (292), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 91/139 (65%), Gaps = 7/139 (5%)
Query: 79 LRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQM--EFGIVRLLAIFVVASAD 136
L GSL +S+ D LVGASGGVYAL+ + NV++N+ +M FGIVRLL I ++ ++D
Sbjct: 167 LAGSLASSIFDPLKSLVGASGGVYALMGGYFMNVIVNFREMIPAFGIVRLLVIILIVASD 226
Query: 137 VGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALG 196
+GFA+Y R+ +G PVS+ AH+ G AG++IG V F++ L + +WIA+
Sbjct: 227 MGFALYRRFFV----PANGSPVSFAAHIAGGFAGMSIGYTVFSCFDKTLLKDPRFWIAIA 282
Query: 197 VYVACTIFAVIYNV-TSPS 214
YVAC +FAV +N+ SP+
Sbjct: 283 AYVACLLFAVFFNIFLSPA 301
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 8 SLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQM--EFGIVRLLAIFVV 58
SL +S+ D LVGASGGVYAL+ + NV++N+ +M FGIVRLL I ++
Sbjct: 170 SLASSIFDPLKSLVGASGGVYALMGGYFMNVIVNFREMIPAFGIVRLLVIILI 222
>sp|O75783|RHBL1_HUMAN Rhomboid-related protein 1 OS=Homo sapiens GN=RHBDL1 PE=2 SV=1
Length = 438
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 96/147 (65%), Gaps = 5/147 (3%)
Query: 66 FVQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQME--FGI 123
+++SL+ + L GSL S+ D +VG SGGVYAL +AHLANV++N+ M + +
Sbjct: 281 LLRISLL-YLAGVLAGSLTVSITDMRAPVVGGSGGVYALCSAHLANVVMNWAGMRCPYKL 339
Query: 124 VRLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQ 183
+R++ V S++VG AV+ R++ L +G S++AHL GA+ G+++GL +L+++E+
Sbjct: 340 LRMVLALVCMSSEVGRAVWLRFSPPLPASGPQ--PSFMAHLAGAVVGVSMGLTILRSYEE 397
Query: 184 KLREQLMWWIALGVYVACTIFAVIYNV 210
+LR+Q WW+ L Y +FAV +NV
Sbjct: 398 RLRDQCGWWVVLLAYGTFLLFAVFWNV 424
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 8 SLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQME--FGIVRLLAIFVV 58
SL S+ D +VG SGGVYAL +AHLANV++N+ M + ++R++ V
Sbjct: 296 SLTVSITDMRAPVVGGSGGVYALCSAHLANVVMNWAGMRCPYKLLRMVLALVC 348
>sp|Q8VC82|RHBL1_MOUSE Rhomboid-related protein 1 OS=Mus musculus GN=Rhbdl1 PE=2 SV=1
Length = 373
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 96/146 (65%), Gaps = 5/146 (3%)
Query: 67 VQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQME--FGIV 124
+++SL+ + L GSL S+ D +VG SGGVYAL +AHLANV++N+ M + ++
Sbjct: 217 LRISLL-YLAGVLAGSLTVSITDMRAPVVGGSGGVYALCSAHLANVVMNWAGMRCPYKLL 275
Query: 125 RLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQK 184
R++ V S++VG AV+ R++ L +G S++AHL GA+ G+++GL +L+++E++
Sbjct: 276 RMVLALVCMSSEVGRAVWLRFSPPLPASGPQ--PSFMAHLAGAVVGVSMGLTILRSYEER 333
Query: 185 LREQLMWWIALGVYVACTIFAVIYNV 210
LR+Q WW+ L Y +FA+ +NV
Sbjct: 334 LRDQCGWWVVLLAYGTFLLFAIFWNV 359
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 8 SLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQME 46
SL S+ D +VG SGGVYAL +AHLANV++N+ M
Sbjct: 231 SLTVSITDMRAPVVGGSGGVYALCSAHLANVVMNWAGMR 269
>sp|Q9NX52|RHBL2_HUMAN Rhomboid-related protein 2 OS=Homo sapiens GN=RHBDL2 PE=1 SV=2
Length = 303
Score = 107 bits (267), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 88/137 (64%), Gaps = 7/137 (5%)
Query: 81 GSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQM--EFGIVRLLAIFVVASADVG 138
GSL +S+ D YLVGASGGVYAL+ + NVL+N+ +M FGI RLL I ++ D+G
Sbjct: 170 GSLASSIFDPLRYLVGASGGVYALMGGYFMNVLVNFQEMIPAFGIFRLLIIILIIVLDMG 229
Query: 139 FAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVY 198
FA+Y R+ G+ PVS+ AH+ G AG++IG V F++ L + +WIA+ Y
Sbjct: 230 FALYRRFFVPEDGS----PVSFAAHIAGGFAGMSIGYTVFSCFDKALLKDPRFWIAIAAY 285
Query: 199 VACTIFAVIYNV-TSPS 214
+AC +FAV +N+ SP+
Sbjct: 286 LACVLFAVFFNIFLSPA 302
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 8 SLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQM--EFGIVR 51
SL +S+ D YLVGASGGVYAL+ + NVL+N+ +M FGI R
Sbjct: 171 SLASSIFDPLRYLVGASGGVYALMGGYFMNVLVNFQEMIPAFGIFR 216
>sp|P58872|RHBL3_HUMAN Rhomboid-related protein 3 OS=Homo sapiens GN=RHBDL3 PE=2 SV=1
Length = 404
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 89/132 (67%), Gaps = 4/132 (3%)
Query: 81 GSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQM--EFGIVRLLAIFVVASADVG 138
GSL SV D +VG+SGGVYAL++AHLAN+++N++ M +F ++R+ + S + G
Sbjct: 261 GSLAVSVADMTAPVVGSSGGVYALVSAHLANIVMNWSGMKCQFKLLRMAVALICMSMEFG 320
Query: 139 FAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVY 198
AV+ R+ A +P S+VAHL G G+T+G++VL+N+EQ+L++Q +WWI + +Y
Sbjct: 321 RAVWLRFHPS-AYPPCPHP-SFVAHLGGVAVGITLGVVVLRNYEQRLQDQSLWWIFVAMY 378
Query: 199 VACTIFAVIYNV 210
+FAV +N+
Sbjct: 379 TVFVLFAVFWNI 390
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%), Gaps = 2/47 (4%)
Query: 8 SLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQM--EFGIVRL 52
SL SV D +VG+SGGVYAL++AHLAN+++N++ M +F ++R+
Sbjct: 262 SLAVSVADMTAPVVGSSGGVYALVSAHLANIVMNWSGMKCQFKLLRM 308
>sp|P58873|RHBL3_MOUSE Rhomboid-related protein 3 OS=Mus musculus GN=Rhbdl3 PE=2 SV=1
Length = 404
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 89/132 (67%), Gaps = 4/132 (3%)
Query: 81 GSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQM--EFGIVRLLAIFVVASADVG 138
GSL SV D +VG+SGGVYAL++AHLAN+++N++ M +F ++R+ + S + G
Sbjct: 261 GSLAVSVADMTAPVVGSSGGVYALVSAHLANIVMNWSGMKCQFKLLRMAVALICMSMEFG 320
Query: 139 FAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVY 198
AV+ R+ A +P S+VAHL G G+T+G++VL+N+EQ+L++Q +WWI + +Y
Sbjct: 321 RAVWLRFHPS-AYPPCPHP-SFVAHLGGVAVGITLGVVVLRNYEQRLQDQSLWWIFVTMY 378
Query: 199 VACTIFAVIYNV 210
+FAV +N+
Sbjct: 379 TIFVLFAVFWNI 390
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%), Gaps = 2/47 (4%)
Query: 8 SLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQM--EFGIVRL 52
SL SV D +VG+SGGVYAL++AHLAN+++N++ M +F ++R+
Sbjct: 262 SLAVSVADMTAPVVGSSGGVYALVSAHLANIVMNWSGMKCQFKLLRM 308
>sp|O88779|RHBL1_RAT Rhomboid-related protein 1 (Fragment) OS=Rattus norvegicus
GN=Rhbdl1 PE=2 SV=1
Length = 164
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 89/134 (66%), Gaps = 5/134 (3%)
Query: 67 VQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQME--FGIV 124
+++SL+ + L GSL S+ D +VG SGGVYAL +AHLANV++N+ M + ++
Sbjct: 30 LRISLL-YLAGVLAGSLTVSITDMRAPVVGGSGGVYALCSAHLANVVMNWAGMRCPYKLL 88
Query: 125 RLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQK 184
R++ V S++VG AV+ R++ L SG S++AHL GA+ G+++GL +L+++E++
Sbjct: 89 RMVLALVCMSSEVGRAVWLRFSPPLPA--SGPQPSFMAHLAGAVVGVSMGLTILRSYEER 146
Query: 185 LREQLMWWIALGVY 198
LR+Q WW+ L Y
Sbjct: 147 LRDQCGWWVVLLAY 160
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 8 SLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQME 46
SL S+ D +VG SGGVYAL +AHLANV++N+ M
Sbjct: 44 SLTVSITDMRAPVVGGSGGVYALCSAHLANVVMNWAGMR 82
>sp|Q19821|ROM1_CAEEL Rhomboid-related protein 1 OS=Caenorhabditis elegans GN=rom-1 PE=3
SV=2
Length = 356
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 5/136 (3%)
Query: 81 GSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVGFA 140
GSL ID + LVGAS GVYAL+ AH+ANV+LN+++M +R+L +FV D G A
Sbjct: 216 GSLLQYAIDPNSLLVGASAGVYALIFAHVANVILNWHEMPLRWIRVLVLFVFIFLDFGGA 275
Query: 141 VYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVYVA 200
++ R+ + VS++AH+ GA+ GL G +VL N + E+++ ++ L +Y A
Sbjct: 276 IHRRFYTNDCDS-----VSHLAHIAGAVTGLFFGYVVLYNVVEHRIEKIIRYVCLFLYSA 330
Query: 201 CTIFAVIYNVTSPSYN 216
+I+ + Y+
Sbjct: 331 FFATTIIFVIVRQPYS 346
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 36/50 (72%)
Query: 8 SLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFV 57
SL ID + LVGAS GVYAL+ AH+ANV+LN+++M +R+L +FV
Sbjct: 217 SLLQYAIDPNSLLVGASAGVYALIFAHVANVILNWHEMPLRWIRVLVLFV 266
>sp|P34356|ROM2_CAEEL Rhomboid-related protein 2 OS=Caenorhabditis elegans GN=rom-2 PE=3
SV=2
Length = 435
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 8/135 (5%)
Query: 72 ITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFV 131
I +F L GS+ + +D V+L G + G ++L+A+H+ + N+ +ME RL + V
Sbjct: 209 ILYFMGVLFGSILSLALDPTVFLCGGAAGSFSLIASHITTIATNFKEMENATCRLPILIV 268
Query: 132 VASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMW 191
A+ D AVY R+ S Y HL G +AG+ ++ + + + +
Sbjct: 269 FAALDYVLAVYQRFFAPRIDKVSMY-----GHLGGLVAGILFTFILFRGSKPSRFYTVSF 323
Query: 192 WIAL---GVYVACTI 203
W++L G ++A I
Sbjct: 324 WVSLVLSGFFIAICI 338
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 14 IDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVGKFN 62
+D V+L G + G ++L+A+H+ + N+ +ME RL + V +
Sbjct: 225 LDPTVFLCGGAAGSFSLIASHITTIATNFKEMENATCRLPILIVFAALD 273
>sp|B4U6S1|CLPX_HYDS0 ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=clpX PE=3
SV=1
Length = 399
Score = 37.7 bits (86), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 49 IVRLLAIFVVGKFNTTSFVQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALLAAH 108
I ++L F++G+ + V++ +K LR S T + S++ L+G +G LLA
Sbjct: 63 IKKILDEFIIGQDEAKKILSVAVYNHYKRILRKS-DTDIEKSNILLIGPTGSGKTLLAKT 121
Query: 109 LANVL 113
LA +L
Sbjct: 122 LAKIL 126
>sp|Q8A128|CLPX_BACTN ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bacteroides
thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC
10582 / E50 / VPI-5482) GN=clpX PE=3 SV=1
Length = 414
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 49 IVRLLAIFVVGKFNTTSFVQVSLITFFKDFLRGSLGTSVI--DSDVYLVGASGGVYALLA 106
I + L +V+G+ + F+ VS+ +K L+ G V S++ +VG++G LLA
Sbjct: 70 IKKFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKDSGDDVEIEKSNIIMVGSTGTGKTLLA 129
Query: 107 AHLANVL 113
+A +L
Sbjct: 130 RTIAKLL 136
>sp|A6LN93|RF2_THEM4 Peptide chain release factor 2 OS=Thermosipho melanesiensis (strain
BI429 / DSM 12029) GN=prfB PE=3 SV=1
Length = 369
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 6 RRSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAI--FVVGKFNT 63
RR ++D Y G G+ + + + Y + E G+ RL+ I F K
Sbjct: 155 RRGFDVQIVD---YQPGEEAGIKSAMLYIKGEYVYGYLKYERGVHRLVRISPFDANKRRH 211
Query: 64 TSFVQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGVY 102
TSF V+++ +D + + + D Y +GG Y
Sbjct: 212 TSFASVNVMPEIEDDIDVEINPEDLRIDTYRASGAGGQY 250
>sp|C4L5K9|RF2_EXISA Peptide chain release factor 2 OS=Exiguobacterium sp. (strain ATCC
BAA-1283 / AT1b) GN=prfB PE=3 SV=1
Length = 366
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 19 YLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAI--FVVGKFNTTSFVQVSLITFFK 76
YL G GV ++ + + Y + E GI RL+ I F TSFV ++ F
Sbjct: 167 YLPGEEAGVKSVTLRIVGHNAYGYLKAEKGIHRLVRISPFDSSGRRHTSFVSCDVMPEFD 226
Query: 77 DFLRGSLGTSVIDSDVYLVGASGGVY 102
D + + T + D Y +GG +
Sbjct: 227 DDIEIEVRTEDLRIDTYRASGAGGQH 252
>sp|B5YI39|CLPX_THEYD ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 /
DSM 11347 / YP87) GN=clpX PE=3 SV=1
Length = 409
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 49 IVRLLAIFVVGKFNTTSFVQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALLAAH 108
I + L +V+G+ + V++ +K +G+ + S++ L+G +G LLA
Sbjct: 65 IHKFLNDYVIGQERAKKILSVAVYNHYKRIFKGTSSDEIQKSNIMLIGPTGTGKTLLAQT 124
Query: 109 LANVL 113
LA L
Sbjct: 125 LAKFL 129
>sp|O34560|YECA_BACSU Uncharacterized amino acid permease YecA OS=Bacillus subtilis
(strain 168) GN=yecA PE=3 SV=2
Length = 424
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
Query: 186 REQLMWWIALGVYVACTIFAVIYN 209
R + WW+ALG +VAC AVIY+
Sbjct: 370 RRDIGWWMALGAFVAC---AVIYS 390
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.140 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,347,898
Number of Sequences: 539616
Number of extensions: 3157149
Number of successful extensions: 11774
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 11732
Number of HSP's gapped (non-prelim): 70
length of query: 219
length of database: 191,569,459
effective HSP length: 113
effective length of query: 106
effective length of database: 130,592,851
effective search space: 13842842206
effective search space used: 13842842206
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)