RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4504
         (219 letters)



>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family.  This family contains
           integral membrane proteins that are related to
           Drosophila rhomboid protein. Members of this family are
           found in bacteria and eukaryotes. Rhomboid promotes the
           cleavage of the membrane-anchored TGF-alpha-like growth
           factor Spitz, allowing it to activate the Drosophila EGF
           receptor. Analysis has shown that Rhomboid-1 is an
           intramembrane serine protease (EC:3.4.21.105).
           Parasite-encoded rhomboid enzymes are also important for
           invasion of host cells by Toxoplasma and the malaria
           parasite.
          Length = 146

 Score = 49.5 bits (119), Expect = 8e-08
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 18/102 (17%)

Query: 81  GSLGTSVIDSDVY-LVGASGGVYALLAAHLANVLLNYNQMEF--GIVRLLAIFVVASADV 137
           GSL + +        VGASG ++ LL A L  +  N   +    G + LL   ++ +  +
Sbjct: 57  GSLLSYLFSPASSPSVGASGAIFGLLGALLVLLPRNRILLFNFPGALLLLLGIILLNLLL 116

Query: 138 GFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLK 179
           GF                  +S  AHL G +AGL +G L+L+
Sbjct: 117 GFLPG---------------ISNFAHLGGLIAGLLLGFLLLR 143



 Score = 34.9 bits (81), Expect = 0.010
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 8   SLGTSVIDSDVY-LVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVV 58
           SL + +        VGASG ++ LL A L  +  N   +      LL +  +
Sbjct: 58  SLLSYLFSPASSPSVGASGAIFGLLGALLVLLPRNRILLFNFPGALLLLLGI 109


>gnl|CDD|198356 cd07778, FGGY_L-RBK_like, L-ribulokinase-like proteins; a subfamily
           of the FGGY family of carbohydrate kinases.  This
           subfamily is composed of a group of putative bacterial
           L-ribulokinases (RBK; EC 2.7.1.16) and similar proteins.
           L-RBK catalyzes the MgATP-dependent phosphorylation of a
           variety of sugar substrates. Members of this subfamily
           belong to the FGGY family of carbohydrate kinases, the
           monomers of which contain two large domains, which are
           separated by a deep cleft that forms the active site.
           This model includes both the N-terminal domain, which
           adopts a ribonuclease H-like fold, and the structurally
           related C-terminal domain.
          Length = 466

 Score = 28.4 bits (64), Expect = 2.8
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 16/61 (26%)

Query: 138 GFAVYNRYAGE-LAGAGSGYPVSYV--------------AHLTGALAGLTIGLLVLKNFE 182
           G   YN Y+GE + G   G P+ +V              AHL  A   L IG+ +L   E
Sbjct: 355 GLLSYNYYSGEPITGLEEGRPL-FVRTPDAKFNLANFMRAHLYSAFGALKIGMDILLKEE 413

Query: 183 Q 183
           +
Sbjct: 414 K 414


>gnl|CDD|221560 pfam12402, nlz1, NocA-like zinc-finger protein 1.  This domain
           family is found in eukaryotes, and is typically between
           42 and 57 amino acids in length. There is a conserved
           GAY sequence motif. There is a single completely
           conserved residue G that may be functionally important.
           Nlz1 self-associated via its C terminus, interacted with
           Nlz2, and bound to histone deacetylases.
          Length = 53

 Score = 26.2 bits (57), Expect = 3.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 145 YAGELAGAGSGYPVSYVAHL 164
           Y G LAGA +GYP  ++  L
Sbjct: 5   YPGSLAGAYAGYPEQFLPGL 24


>gnl|CDD|117200 pfam08627, CRT-like, CRT-like.  This region is found in proteins
           related to Plasmodium falciparum chloroquine resistance
           transporter (CRT).
          Length = 130

 Score = 27.2 bits (60), Expect = 4.5
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 68  QVSLITFFKDFLRGSLGTSVIDSDVYLV--GASGGVYALLAAHLANVLLNY 116
           + SL   FK FL+ S+    +   +Y+V    SG + ++L   + N   NY
Sbjct: 36  KESLSNKFKSFLKNSMSKETLTILIYVVLYIISGVINSVLLKKVMNKFTNY 86


>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid
           transport and metabolism].
          Length = 228

 Score = 27.0 bits (60), Expect = 6.1
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 9/101 (8%)

Query: 92  VYLVGASGGVYALLAAHLANVLLNYNQM-EFGIVRLLAIFVVASADVGFAVYNRYAGELA 150
              +GASG ++ LL A+          +    + R   I ++                  
Sbjct: 131 APSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILILIWLLYSLF--------SG 182

Query: 151 GAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMW 191
               G  V++ AHL G + GL +  L+ +   ++  ++ + 
Sbjct: 183 AGSFGPSVAWSAHLGGLIGGLLLAALLSRKLRKRRLKRSIL 223


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.326    0.140    0.410 

Gapped
Lambda     K      H
   0.267   0.0759    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,629,816
Number of extensions: 1154137
Number of successful extensions: 1890
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1877
Number of HSP's successfully gapped: 90
Length of query: 219
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 126
Effective length of database: 6,812,680
Effective search space: 858397680
Effective search space used: 858397680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.7 bits)