RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4504
(219 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 7e-07
Identities = 51/255 (20%), Positives = 80/255 (31%), Gaps = 84/255 (32%)
Query: 3 VW------LRRSLGTSVID-------SDVYLVGASGGVYALLAAHLANVLLNYNQMEF-- 47
VW + + G S++D + G G + NY+ M F
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR---------IRENYSAMIFET 1695
Query: 48 ---GIVRLLAIFVV--------------GKFNTTSFVQVSLITF----FKDFLRGSLGTS 86
G ++ IF G + T F Q +L F+D L+ S G
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFED-LK-SKG-- 1751
Query: 87 VIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFG-IVRLLAIFVVASADVGFAVYNRY 145
+I +D G S G YA LA+ LA+V M +V + V+ R
Sbjct: 1752 LIPADATFAGHSLGEYAALAS-LADV------MSIESLVEV--------------VFYR- 1789
Query: 146 AGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVYVACTIFA 205
G P + + + G + ++ L+ + V
Sbjct: 1790 -GMT--MQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY-----VVERVGKRTGWLV 1841
Query: 206 VI--YNVTSPSYNYV 218
I YNV + YV
Sbjct: 1842 EIVNYNV--ENQQYV 1854
Score = 42.3 bits (99), Expect = 8e-05
Identities = 40/200 (20%), Positives = 70/200 (35%), Gaps = 67/200 (33%)
Query: 7 RSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFG-IVRLLAIFVVGKFNTTS 65
+S G +I +D G S G YA LA+ LA+V M +V ++
Sbjct: 1748 KSKG--LIPADATFAGHSLGEYAALAS-LADV------MSIESLVEVV------------ 1786
Query: 66 FVQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVR 125
F RG + D +G S Y ++A +N ++ +
Sbjct: 1787 ------------FYRGMTMQVAVPRDE--LGRSN--YGMIA-------INPGRVAASFSQ 1823
Query: 126 LLAIFVV--ASADVGFAV----YN----RY--AGELAGAGSGYPVSYVAHLTGALAGLTI 173
+VV G+ V YN +Y AG+L + V ++ + I
Sbjct: 1824 EALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRA------LDTVTNVLNFIKLQKI 1877
Query: 174 GLLVLK---NFEQKLREQLM 190
++ L+ + E ++ L
Sbjct: 1878 DIIELQKSLSLE-EVEGHLF 1896
Score = 36.6 bits (84), Expect = 0.005
Identities = 31/168 (18%), Positives = 55/168 (32%), Gaps = 34/168 (20%)
Query: 52 LLAIF------VVGKFNTTSFVQV---SLITFFKDFLRG----SLGTSVIDSDVYLVGAS 98
L+ F +V F QV L F +L G +L ++ + + +
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 99 GGV---YALLAAHLANVLLN-------YNQMEFGIVRLLAIFVVASADVGFAVYNRYAGE 148
+ Y + A +A + + + G +L+AIF G + Y E
Sbjct: 120 KELIKNY-ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF------GGQGNTDDYFEE 172
Query: 149 LAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQ---LMWWI 193
L Y V L A L+ +K+ Q ++ W+
Sbjct: 173 LRDLYQTYH-VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Score = 28.9 bits (64), Expect = 1.9
Identities = 40/201 (19%), Positives = 66/201 (32%), Gaps = 70/201 (34%)
Query: 29 ALLAAHLANVLLNYNQMEFGIVRLLAIFVVG--------------KFNT-TSFVQVSLIT 73
AL A G +L+AIF G + T V LI
Sbjct: 144 ALFRAVGE-----------GNAQLVAIF--GGQGNTDDYFEELRDLYQTYHVLVG-DLIK 189
Query: 74 FFKDFLRGSLGTSVIDSDVY----------LVGASG--GVYALLAAHLANVLLNYNQMEF 121
F + L L + +D++ L S LL+ ++ L+ Q
Sbjct: 190 FSAETLS-ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ--- 245
Query: 122 GIVRLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLV---- 177
LA +VV + +GF GEL G TG GL + +
Sbjct: 246 -----LAHYVVTAKLLGFTP-----GELRSYLKG--------ATGHSQGLVTAVAIAETD 287
Query: 178 -LKNFEQKLRE--QLMWWIAL 195
++F +R+ ++++I +
Sbjct: 288 SWESFFVSVRKAITVLFFIGV 308
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease,
membrane protein; HET: PA6 PQE; 2.20A {Haemophilus
influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Length = 196
Score = 36.2 bits (84), Expect = 0.004
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 16/99 (16%)
Query: 90 SDVYLVGASGGVYALLAAHLANVLLNYNQMEF--GIVRLLAIFVVASADVGFAVYNRYAG 147
S G SG VYA+L LN++ + G +L + +
Sbjct: 108 SGPAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPLFGVE---- 163
Query: 148 ELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLR 186
+ AH++G + GL G + K + L
Sbjct: 164 ----------MGNAAHISGLIVGLIWGFIDSKLRKNSLE 192
Score = 27.3 bits (61), Expect = 3.7
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 16 SDVYLVGASGGVYALLAAHLANVLLNYNQMEF--GIVRLLAIFVV 58
S G SG VYA+L LN++ + G +L + +
Sbjct: 108 SGPAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIA 152
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane
protease; HET: BNG; 1.65A {Escherichia coli} PDB:
2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A*
3txt_A* 2xtv_A* 3b44_A*
Length = 181
Score = 33.8 bits (78), Expect = 0.020
Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 12/91 (13%)
Query: 90 SDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVGFAVYNRYAGEL 149
S + G SG VYAL+ G + + + FA+ AG
Sbjct: 103 SGPWFGGLSGVVYALMGYVWL----------RGERDPQSGIYLQRGLIIFALIWIVAGWF 152
Query: 150 AGAGSGYPVSYVAHLTGALAGLTIGLLVLKN 180
G ++ AH+ G GL + + N
Sbjct: 153 DLFGMS--MANGAHIAGLAVGLAMAFVDSLN 181
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.082
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 155 GYPVSYVA-HLTGALAGLTIGLL--VLKNF---EQKLREQLMWWIALG 196
Y S++ HL + L V +F EQK+R W A G
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Score = 30.2 bits (67), Expect = 0.56
Identities = 32/197 (16%), Positives = 59/197 (29%), Gaps = 61/197 (30%)
Query: 43 NQMEFGIVRLLAIFVVGKFNTTSFVQVSLITFFKDFLRGSLGTSVIDSDVYLVG-ASGGV 101
+ ++ +L++F +FV +D + L ID + + A G
Sbjct: 12 GEHQYQYKDILSVFE------DAFVDNFDCKDVQDMPKSILSKEEID-HIIMSKDAVSGT 64
Query: 102 YALLAAHLANVLLNYNQMEFGIVRLLAIFV--VASADVGF----------------AVYN 143
L LL+ + ++ FV V + F +Y
Sbjct: 65 LRLF-----WTLLSKQE------EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 144 RYAGELAGAG---SGYPVS---YVAHLTGAL------AGLTI-GLL----------VLKN 180
L + Y VS L AL + I G+L V +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 181 FE-QKLREQLMWWIALG 196
++ Q + ++W+ L
Sbjct: 174 YKVQCKMDFKIFWLNLK 190
>3sk9_A Putative uncharacterized protein TTHB187; crispr, CAS, HD domain,
nuclease, hydrolase; 1.80A {Thermus thermophilus HB8}
PDB: 3skd_A
Length = 265
Score = 27.1 bits (59), Expect = 4.6
Identities = 24/127 (18%), Positives = 35/127 (27%), Gaps = 29/127 (22%)
Query: 96 GASGGVYALLAAHLANV------LLNYN------------QMEFGIVRLLAIFVVASADV 137
SG + L AH+ + +L + A +V D+
Sbjct: 17 AKSGNPFHPLLAHMLDTAAVALAVLRMEPPRTRALYAEDWGLPEEGALAWAAALVGLHDL 76
Query: 138 G-----FAVYNRYAGEL---AGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQL 189
G F E AG G + +VAH + +LK R
Sbjct: 77 GKASPVFQAGWEEGKERVQRAGLPFGELLDWVAH---GVFTELFLRRLLKEKGLPERAAN 133
Query: 190 MWWIALG 196
ALG
Sbjct: 134 DLAAALG 140
>3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid
synthase, type III PKS, acyltransferase, transferase;
2.58A {Neurospora crassa}
Length = 465
Score = 26.2 bits (57), Expect = 9.2
Identities = 19/140 (13%), Positives = 40/140 (28%), Gaps = 12/140 (8%)
Query: 61 FNTTSFVQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGVYAL-LAAHLANVLLNYNQM 119
T + + G L + ++ +G SGG+ AL AA+L +
Sbjct: 137 STTCTDSANPGYDHYVAKELG-LSDRLEKVLLHGIGCSGGLAALRTAANLCLGHTARGKP 195
Query: 120 EFGIV----RLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGL 175
+V + + R L + + + A +
Sbjct: 196 ARILVLALEVSTTMVRSELESIDALQETRIGIALFSDCAS---AVILSNGIGEAPGKPAI 252
Query: 176 LVLKNFEQKLR---EQLMWW 192
L +E ++ E + +
Sbjct: 253 YDLLGWENRVIPDSEHDLGF 272
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.140 0.410
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,442,246
Number of extensions: 209362
Number of successful extensions: 666
Number of sequences better than 10.0: 1
Number of HSP's gapped: 657
Number of HSP's successfully gapped: 31
Length of query: 219
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 129
Effective length of database: 4,188,903
Effective search space: 540368487
Effective search space used: 540368487
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.4 bits)