RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4504
         (219 letters)



>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus
           influenzae [TaxId: 727]}
          Length = 189

 Score = 31.7 bits (71), Expect = 0.041
 Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 12/101 (11%)

Query: 86  SVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVGFAVYNRY 145
               S     G SG VYA+L        LN+    F +       ++    +GF      
Sbjct: 101 QNYVSGPAFFGLSGVVYAVLGYVFIRDKLNH--HLFDLPEGFFTMLLVGIALGFI----- 153

Query: 146 AGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLR 186
                    G  +   AH++G + GL  G +  K  +  L 
Sbjct: 154 -----SPLFGVEMGNAAHISGLIVGLIWGFIDSKLRKNSLE 189


>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase
           {Helicobacter pylori [TaxId: 210]}
          Length = 255

 Score = 28.4 bits (62), Expect = 0.66
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 71  LITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYN 117
           LI +  DFL   +          + G SGG+ + +   L   +   N
Sbjct: 6   LIVYLCDFLEKEVQKRGFKK--VVYGLSGGLDSAVVGVLCQKVFKEN 50


>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
          Length = 180

 Score = 25.1 bits (54), Expect = 5.8
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 12/92 (13%)

Query: 86  SVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVGFAVYNRY 145
               S  +  G SG VYAL+         +     +    L+   ++      F ++   
Sbjct: 99  QQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLF--- 155

Query: 146 AGELAGAGSGYPVSYVAHLTGALAGLTIGLLV 177
                    G  ++  AH+ G   GL +  + 
Sbjct: 156 ---------GMSMANGAHIAGLAVGLAMAFVD 178


>d1nqna_ b.61.1.1 (A:) Avidin {Chicken (Gallus gallus) [TaxId:
           9031]}
          Length = 122

 Score = 24.5 bits (53), Expect = 6.6
 Identities = 6/42 (14%), Positives = 10/42 (23%)

Query: 142 YNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQ 183
           Y       +      P+    +        T G  V   F +
Sbjct: 32  YTTAVTATSNEIKESPLHGTENTINKRTQPTFGFTVNWKFSE 73


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.140    0.410 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 794,891
Number of extensions: 33846
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 6
Length of query: 219
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,281,736
Effective search space: 175597832
Effective search space used: 175597832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.9 bits)