Query psy4506
Match_columns 83
No_of_seqs 115 out of 1083
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 18:54:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA03234 DNA packaging protein 99.2 1.6E-11 3.5E-16 79.9 4.3 40 28-67 279-318 (338)
2 KOG4220|consensus 99.0 9.5E-11 2.1E-15 77.7 1.0 66 3-70 423-492 (503)
3 PHA02834 chemokine receptor-li 98.9 1.9E-09 4E-14 69.6 5.3 36 30-65 274-309 (323)
4 PHA03235 DNA packaging protein 98.9 2.5E-09 5.3E-14 71.3 5.4 39 28-66 286-324 (409)
5 PHA02638 CC chemokine receptor 98.9 3.6E-09 7.8E-14 70.7 5.9 39 29-67 361-399 (417)
6 KOG4219|consensus 98.8 1.7E-09 3.7E-14 71.4 1.5 42 26-67 296-337 (423)
7 PHA03087 G protein-coupled che 98.7 3.2E-08 6.9E-13 63.8 5.9 39 30-68 288-326 (335)
8 KOG2087|consensus 97.9 8.1E-06 1.8E-10 53.7 2.0 29 38-66 279-307 (363)
9 PF10320 7TM_GPCR_Srsx: Serpen 97.2 0.00049 1.1E-08 43.5 3.4 37 27-63 221-257 (257)
10 PF00001 7tm_1: 7 transmembran 97.1 0.00069 1.5E-08 41.0 3.1 24 25-48 234-257 (257)
11 PF10324 7TM_GPCR_Srw: Serpent 97.0 0.0015 3.3E-08 42.0 4.7 39 28-66 280-318 (318)
12 PF10323 7TM_GPCR_Srv: Serpent 95.2 0.082 1.8E-06 33.9 5.5 34 32-65 250-283 (283)
13 PF10321 7TM_GPCR_Srt: Serpent 94.4 0.087 1.9E-06 34.5 4.0 42 26-67 268-309 (313)
14 PF05296 TAS2R: Mammalian tast 92.0 0.6 1.3E-05 30.4 5.1 41 26-66 262-302 (303)
15 PF05462 Dicty_CAR: Slime mold 77.9 11 0.00025 24.7 5.5 37 28-64 233-269 (303)
16 PF11970 Git3_C: G protein-cou 77.0 4.3 9.3E-05 21.2 2.8 31 26-56 45-75 (76)
17 PF10328 7TM_GPCR_Srx: Serpent 75.6 5.3 0.00011 25.3 3.5 32 31-62 241-272 (274)
18 PF10317 7TM_GPCR_Srd: Serpent 73.2 9.8 0.00021 24.5 4.3 36 26-61 257-292 (292)
19 PF10318 7TM_GPCR_Srh: Serpent 69.9 14 0.00031 23.6 4.5 37 29-65 266-302 (302)
20 KOG4564|consensus 64.3 14 0.0003 26.0 3.8 33 34-66 388-420 (473)
21 KOG4193|consensus 60.7 61 0.0013 23.7 6.5 25 43-67 559-583 (610)
22 PF10326 7TM_GPCR_Str: Serpent 56.9 0.94 2E-05 29.1 -2.7 29 32-60 279-307 (307)
23 PF04628 Sedlin_N: Sedlin, N-t 31.2 43 0.00094 19.0 1.8 28 37-64 101-131 (132)
24 PF03125 Sre: C. elegans Sre G 30.3 1.7E+02 0.0037 19.6 6.8 35 31-65 287-321 (365)
25 PF02295 z-alpha: Adenosine de 25.7 42 0.00091 16.9 1.0 14 40-53 34-47 (66)
26 PF05391 Lsm_interact: Lsm int 25.5 36 0.00079 13.3 0.6 9 51-59 11-19 (21)
27 PF10327 7TM_GPCR_Sri: Serpent 22.6 1.5E+02 0.0033 19.3 3.3 32 27-58 271-302 (303)
28 PF07325 Curto_V2: Curtovirus 21.9 79 0.0017 17.8 1.6 13 54-66 52-64 (126)
29 PF07746 LigA: Aromatic-ring-o 21.3 1.5E+02 0.0032 15.9 2.6 20 43-62 1-20 (88)
No 1
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.21 E-value=1.6e-11 Score=79.88 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcccC
Q psy4506 28 YIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVF 67 (83)
Q Consensus 28 ~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~~ 67 (83)
..+.++.+++++|||+||+||++.+++||+++++.+++..
T Consensus 279 ~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~~~~~ 318 (338)
T PHA03234 279 ILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACFQDFF 318 (338)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3457888999999999999999999999999998876543
No 2
>KOG4220|consensus
Probab=99.00 E-value=9.5e-11 Score=77.70 Aligned_cols=66 Identities=38% Similarity=0.606 Sum_probs=52.7
Q ss_pred cchhhHHHHHHHHH----hhcCCCCCCcHHHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcccCCCc
Q psy4506 3 LTGTNLGIYLYLIS----TLCGPPCDCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFPWC 70 (83)
Q Consensus 3 ~~~~~i~~~~~~i~----~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~~~~~ 70 (83)
++++++.|.+|.++ .|| .+| .+.....+..||.|+||-+||++|++=|..||+++++++.|+....
T Consensus 423 LlAFIiTWtPYNImVlv~tFC-~~C-iP~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~Cr~~~~ 492 (503)
T KOG4220|consen 423 LLAFILTWTPYNIMVLVNTFC-KNC-IPETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLLCRWKKR 492 (503)
T ss_pred HHHHHHHcccceeeeehHhhc-ccc-cchhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhheeeeccc
Confidence 45666667776553 455 344 4788889999999999999999999999999999999998876533
No 3
>PHA02834 chemokine receptor-like protein; Provisional
Probab=98.94 E-value=1.9e-09 Score=69.64 Aligned_cols=36 Identities=28% Similarity=0.692 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcc
Q psy4506 30 VTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSF 65 (83)
Q Consensus 30 ~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~ 65 (83)
..++.+++++||++||+||++.+++||+++++++++
T Consensus 274 ~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~~~~ 309 (323)
T PHA02834 274 IDIAELISFVHCCVNPIIYAFVGKNFKKVFKNMFCR 309 (323)
T ss_pred HHHHHHHHHhhccccHHHHHHhcHHHHHHHHHHHHh
Confidence 356788999999999999999999999999999864
No 4
>PHA03235 DNA packaging protein UL33; Provisional
Probab=98.92 E-value=2.5e-09 Score=71.33 Aligned_cols=39 Identities=23% Similarity=0.497 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhccc
Q psy4506 28 YIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFV 66 (83)
Q Consensus 28 ~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~ 66 (83)
....++.+++++|||+||+||++.+++||+++++.++++
T Consensus 286 ~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~~ 324 (409)
T PHA03235 286 AVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRGE 324 (409)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhhh
Confidence 345678889999999999999999999999999888643
No 5
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=98.91 E-value=3.6e-09 Score=70.67 Aligned_cols=39 Identities=21% Similarity=0.392 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcccC
Q psy4506 29 IVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVF 67 (83)
Q Consensus 29 ~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~~ 67 (83)
...++..++++|||+||++|++.+++||+++++++++..
T Consensus 361 ~~~vt~~la~~~sclNPiIY~f~~~~FR~~l~~~~~~~~ 399 (417)
T PHA02638 361 AMMLAEAISLTHCCINPLIYTLIGENFRMHLLMIFRNIF 399 (417)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhCHHHHHHHHHHHHHhc
Confidence 345777899999999999999999999999999986554
No 6
>KOG4219|consensus
Probab=98.80 E-value=1.7e-09 Score=71.41 Aligned_cols=42 Identities=19% Similarity=0.667 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcccC
Q psy4506 26 PEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVF 67 (83)
Q Consensus 26 ~~~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~~ 67 (83)
..+.+....|++.+|+|+||+||++.|++||.++++.++++.
T Consensus 296 i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~cp 337 (423)
T KOG4219|consen 296 IQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWCP 337 (423)
T ss_pred HHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhheee
Confidence 356678889999999999999999999999999999998763
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=98.74 E-value=3.2e-08 Score=63.84 Aligned_cols=39 Identities=26% Similarity=0.497 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcccCC
Q psy4506 30 VTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFP 68 (83)
Q Consensus 30 ~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~~~ 68 (83)
..+..+++.+|+++||+||++.+++||++++++++....
T Consensus 288 ~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~~~~~~~~~ 326 (335)
T PHA03087 288 LHVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLKLMFT 326 (335)
T ss_pred HHHHHHHHHHHHhhhhhHHHHcCHHHHHHHHHHHHHHhh
Confidence 356778889999999999999999999999999876554
No 8
>KOG2087|consensus
Probab=97.87 E-value=8.1e-06 Score=53.66 Aligned_cols=29 Identities=45% Similarity=0.664 Sum_probs=25.9
Q ss_pred HhhhhhhhHhHHhccHHHHHHHHHHhccc
Q psy4506 38 YFNSVLNPLMYAYFNRDFREAFKNTLSFV 66 (83)
Q Consensus 38 ~~ns~~nP~iY~~~~~~~r~~~~~~~~~~ 66 (83)
=+|||+||++|++.++.||+.++.++++.
T Consensus 279 Plns~~NP~LYa~fT~~fk~d~~~l~~k~ 307 (363)
T KOG2087|consen 279 PLNSCLNPFLYAFFTPVFKEDLFLLLSKV 307 (363)
T ss_pred EcccccCchhHHHcCHHHHHHHHHHHhhc
Confidence 46999999999999999999999988654
No 9
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=97.18 E-value=0.00049 Score=43.47 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHh
Q psy4506 27 EYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 63 (83)
Q Consensus 27 ~~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~ 63 (83)
........+++..+.+.|-.+|.+++++||+++++++
T Consensus 221 ~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~af~~~~ 257 (257)
T PF10320_consen 221 AIIQMYAGIFVNISYSQNFFVYYWRSSEYRKAFRELF 257 (257)
T ss_pred HHHHHHHHHHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence 3455677888999999999999999999999999863
No 10
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=97.05 E-value=0.00069 Score=40.98 Aligned_cols=24 Identities=29% Similarity=0.768 Sum_probs=21.1
Q ss_pred CcHHHHHHHHHHHHhhhhhhhHhH
Q psy4506 25 CPEYIVTILFWIGYFNSVLNPLMY 48 (83)
Q Consensus 25 ~~~~~~~~~~~l~~~ns~~nP~iY 48 (83)
.......+..+++.+|+++||++|
T Consensus 234 ~~~~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 234 ISSILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhCcEEC
Confidence 356677899999999999999998
No 11
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=97.04 E-value=0.0015 Score=42.03 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhccc
Q psy4506 28 YIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFV 66 (83)
Q Consensus 28 ~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~ 66 (83)
....+...+..+|+..+++||.+.+.+||++++++++|+
T Consensus 280 ~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f~~k 318 (318)
T PF10324_consen 280 QLSIIFNILITINSSIHFFICCFMSSQYRKTVKKLFGCK 318 (318)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHhccC
Confidence 445677888899999999999999999999999999863
No 12
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=95.21 E-value=0.082 Score=33.94 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=29.7
Q ss_pred HHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcc
Q psy4506 32 ILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSF 65 (83)
Q Consensus 32 ~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~ 65 (83)
..-....+.|.+||+.=-+.|++.|+++++.++|
T Consensus 250 ~y~~~~~~~s~inP~~LLi~n~~lr~~~~~~~~~ 283 (283)
T PF10323_consen 250 FYPILNGLLSFINPWMLLIFNKDLRKQVRRMLKC 283 (283)
T ss_pred HHHHHHHHHHhhhhHHhhhccHHHHHHHHHHcCC
Confidence 5556677888999999999999999999998875
No 13
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=94.35 E-value=0.087 Score=34.55 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcccC
Q psy4506 26 PEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVF 67 (83)
Q Consensus 26 ~~~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~~ 67 (83)
++....++-..-.+++..+|+||-..|+..|++++++++.+.
T Consensus 268 p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~~k~ 309 (313)
T PF10321_consen 268 PPWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLGPKK 309 (313)
T ss_pred cHHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHHcccc
Confidence 445555556666789999999999999999999999987543
No 14
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=91.98 E-value=0.6 Score=30.38 Aligned_cols=41 Identities=12% Similarity=-0.005 Sum_probs=34.5
Q ss_pred cHHHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhccc
Q psy4506 26 PEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFV 66 (83)
Q Consensus 26 ~~~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~ 66 (83)
......+....+.+.|...|++--+.|++.|+++++++++.
T Consensus 262 ~~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~~~ 302 (303)
T PF05296_consen 262 NSIWFWVCEIIIALYPSGHSIILILGNPKLRQALLKILWCL 302 (303)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhc
Confidence 34455667778889999999999999999999999998753
No 15
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=77.94 E-value=11 Score=24.72 Aligned_cols=37 Identities=11% Similarity=0.257 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhc
Q psy4506 28 YIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLS 64 (83)
Q Consensus 28 ~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~ 64 (83)
........++-+.-..|.++|...++-.++-+...+.
T Consensus 233 ~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~~ 269 (303)
T PF05462_consen 233 WLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKIL 269 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3333444455566679999999999977766655553
No 16
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=76.99 E-value=4.3 Score=21.20 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHHhhhhhhhHhHHhccHHHH
Q psy4506 26 PEYIVTILFWIGYFNSVLNPLMYAYFNRDFR 56 (83)
Q Consensus 26 ~~~~~~~~~~l~~~ns~~nP~iY~~~~~~~r 56 (83)
......++..+..+|..+|-++|+++.+..|
T Consensus 45 ~~~l~~i~~~~~~~~G~VD~lvf~~~erpw~ 75 (76)
T PF11970_consen 45 SFWLFCIAGFMQPSQGFVDCLVFTLRERPWR 75 (76)
T ss_pred chHHHHHHHHHHHccCHHHhhheeeecccCC
Confidence 4566778888889999999999999876543
No 17
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=75.56 E-value=5.3 Score=25.31 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=23.9
Q ss_pred HHHHHHHHhhhhhhhHhHHhccHHHHHHHHHH
Q psy4506 31 TILFWIGYFNSVLNPLMYAYFNRDFREAFKNT 62 (83)
Q Consensus 31 ~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~ 62 (83)
..+...-.+.-++|++++-..|+++|+..++.
T Consensus 241 ~~~t~~w~~~h~~DG~i~l~fN~~~r~~~~~~ 272 (274)
T PF10328_consen 241 FCTTFSWVLVHALDGLIMLIFNSEIRRKIRKK 272 (274)
T ss_pred HHHHHHHHHHHHhcceeEeEEcHHHHHHHHhc
Confidence 33333344555789999999999999988875
No 18
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=73.24 E-value=9.8 Score=24.45 Aligned_cols=36 Identities=22% Similarity=0.593 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHH
Q psy4506 26 PEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKN 61 (83)
Q Consensus 26 ~~~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~ 61 (83)
....+........+.+.+||++.-..-+.+|+.++|
T Consensus 257 ~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r 292 (292)
T PF10317_consen 257 HPFLEYLIFMLASLPPLIDPLITLYFVRPYRKAILR 292 (292)
T ss_pred cHHHHHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence 334455556677888899999999999999998764
No 19
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=69.95 E-value=14 Score=23.61 Aligned_cols=37 Identities=11% Similarity=0.256 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcc
Q psy4506 29 IVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSF 65 (83)
Q Consensus 29 ~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~ 65 (83)
...+.......+....-+..-+.++.+|+.++++++|
T Consensus 266 ~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~~~ 302 (302)
T PF10318_consen 266 LNNISFIIISLHGIASTIVMILVHKPYRKFLLSLFRC 302 (302)
T ss_pred cchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHhcC
Confidence 3345566678888899999999999999999999875
No 20
>KOG4564|consensus
Probab=64.28 E-value=14 Score=26.03 Aligned_cols=33 Identities=15% Similarity=0.499 Sum_probs=25.0
Q ss_pred HHHHHhhhhhhhHhHHhccHHHHHHHHHHhccc
Q psy4506 34 FWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFV 66 (83)
Q Consensus 34 ~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~ 66 (83)
..+..+.-.+=.++|++.|++.|.++||...+.
T Consensus 388 ~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~r~ 420 (473)
T KOG4564|consen 388 LFLGSFQGFFVAVLYCFLNGEVQAELRRKWSRW 420 (473)
T ss_pred HHHHhccchheehheeecCHHHHHHHHHHHHhc
Confidence 334444445668899999999999999987543
No 21
>KOG4193|consensus
Probab=60.75 E-value=61 Score=23.68 Aligned_cols=25 Identities=8% Similarity=0.155 Sum_probs=20.3
Q ss_pred hhhHhHHhccHHHHHHHHHHhcccC
Q psy4506 43 LNPLMYAYFNRDFREAFKNTLSFVF 67 (83)
Q Consensus 43 ~nP~iY~~~~~~~r~~~~~~~~~~~ 67 (83)
.--+.|..+.++.|++.++.++|..
T Consensus 559 fIFi~~cll~~kvr~~~~k~~~~~~ 583 (610)
T KOG4193|consen 559 FIFIFHCLLRKKVRKEYRKWLCCGR 583 (610)
T ss_pred HhhHhhhhhhHHHHHHHHHHhcccC
Confidence 4466789999999999999988543
No 22
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=56.94 E-value=0.94 Score=29.09 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=23.3
Q ss_pred HHHHHHHhhhhhhhHhHHhccHHHHHHHH
Q psy4506 32 ILFWIGYFNSVLNPLMYAYFNRDFREAFK 60 (83)
Q Consensus 32 ~~~~l~~~ns~~nP~iY~~~~~~~r~~~~ 60 (83)
.......+.|++||++--+.-+++|++++
T Consensus 279 ~~~~~~~~yP~iDpl~~i~~ik~yR~~i~ 307 (307)
T PF10326_consen 279 IISILISLYPAIDPLPVIFIIKDYRKAIK 307 (307)
T ss_pred HhhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence 44445677889999999999999998863
No 23
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=31.20 E-value=43 Score=19.01 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=19.3
Q ss_pred HHhhhhhhhHh---HHhccHHHHHHHHHHhc
Q psy4506 37 GYFNSVLNPLM---YAYFNRDFREAFKNTLS 64 (83)
Q Consensus 37 ~~~ns~~nP~i---Y~~~~~~~r~~~~~~~~ 64 (83)
.++....||+. =-+.++.|.+.++++.+
T Consensus 101 ~Y~~~~~NPF~~~~~~I~S~~Fd~~v~~l~~ 131 (132)
T PF04628_consen 101 LYVKALCNPFYQPGTPIKSPKFDSRVRALAK 131 (132)
T ss_dssp HHHHHHTSTTCGCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCCCCCCcCCHHHHHHHHHHhc
Confidence 46677788885 35667788888777653
No 24
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=30.30 E-value=1.7e+02 Score=19.57 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=24.8
Q ss_pred HHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcc
Q psy4506 31 TILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSF 65 (83)
Q Consensus 31 ~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~ 65 (83)
.+.-....+++.+-|.+--...+.+|+++++.+..
T Consensus 287 ~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~~ 321 (365)
T PF03125_consen 287 HIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFPK 321 (365)
T ss_pred HHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhhh
Confidence 34444556677766766677888899998888753
No 25
>PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3.5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A ....
Probab=25.65 E-value=42 Score=16.88 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=10.9
Q ss_pred hhhhhhHhHHhccH
Q psy4506 40 NSVLNPLMYAYFNR 53 (83)
Q Consensus 40 ns~~nP~iY~~~~~ 53 (83)
-.-+|+.+|.+..+
T Consensus 34 kk~VN~~LY~L~k~ 47 (66)
T PF02295_consen 34 KKEVNRVLYRLEKQ 47 (66)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
Confidence 35699999988654
No 26
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=25.46 E-value=36 Score=13.29 Aligned_cols=9 Identities=56% Similarity=0.910 Sum_probs=5.1
Q ss_pred ccHHHHHHH
Q psy4506 51 FNRDFREAF 59 (83)
Q Consensus 51 ~~~~~r~~~ 59 (83)
.|.+||+-+
T Consensus 11 SNddFrkmf 19 (21)
T PF05391_consen 11 SNDDFRKMF 19 (21)
T ss_pred chHHHHHHH
Confidence 456666544
No 27
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=22.56 E-value=1.5e+02 Score=19.31 Aligned_cols=32 Identities=19% Similarity=0.131 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhhhhhhHhHHhccHHHHHH
Q psy4506 27 EYIVTILFWIGYFNSVLNPLMYAYFNRDFREA 58 (83)
Q Consensus 27 ~~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~ 58 (83)
+...........++|.+|-++--+.++.||+-
T Consensus 271 q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f 302 (303)
T PF10327_consen 271 QVISEICLAIFSSHSSVNMIVLIITTPPYRKF 302 (303)
T ss_pred HHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence 34455666667888999999999999999863
No 28
>PF07325 Curto_V2: Curtovirus V2 protein; InterPro: IPR009931 This family consists of several Curtovirus V2 proteins. The exact function of V2 is unclear but it is known that the protein is required for a successful host infection process [].
Probab=21.91 E-value=79 Score=17.84 Aligned_cols=13 Identities=23% Similarity=0.325 Sum_probs=10.7
Q ss_pred HHHHHHHHHhccc
Q psy4506 54 DFREAFKNTLSFV 66 (83)
Q Consensus 54 ~~r~~~~~~~~~~ 66 (83)
+|++.+++++++.
T Consensus 52 qFQKevKKLLk~k 64 (126)
T PF07325_consen 52 QFQKEVKKLLKRK 64 (126)
T ss_pred HHHHHHHHHHHHh
Confidence 5899999998754
No 29
>PF07746 LigA: Aromatic-ring-opening dioxygenase LigAB, LigA subunit; InterPro: IPR011986 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A (IPR004183 from INTERPRO) and B (IPR004183 from INTERPRO). LigAB is a protocatechuate 4,5-dioxygenase (1.13.11.8 from EC) that belongs to the extradiol class III enzyme family. The LigA subunit of this enzyme is multi-helical, containing a compact array of 6 short helices [].; PDB: 1BOU_A 1B4U_A.
Probab=21.26 E-value=1.5e+02 Score=15.91 Aligned_cols=20 Identities=25% Similarity=0.394 Sum_probs=14.5
Q ss_pred hhhHhHHhccHHHHHHHHHH
Q psy4506 43 LNPLMYAYFNRDFREAFKNT 62 (83)
Q Consensus 43 ~nP~iY~~~~~~~r~~~~~~ 62 (83)
+|=+++.+..+..|..+++-
T Consensus 1 lNkf~~~L~~~~~r~~F~~D 20 (88)
T PF07746_consen 1 LNKFCWSLNDPENRERFLAD 20 (88)
T ss_dssp HHHHHHGGGSHHHHHHHHH-
T ss_pred ChHHHHHHcCHHHHHHHHHC
Confidence 46778888888888877663
Done!