Query psy4506
Match_columns 83
No_of_seqs 115 out of 1083
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 18:54:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4506.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4506hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4grv_A Neurotensin receptor ty 99.5 1E-15 3.6E-20 101.8 -0.8 40 29-68 451-490 (510)
2 2rh1_A Beta-2-adrenergic recep 99.4 9.7E-13 3.3E-17 87.1 5.6 65 3-68 413-480 (500)
3 2koe_A Human cannabinoid recep 99.3 2.4E-13 8.3E-18 62.5 1.8 36 30-65 3-38 (40)
4 3eml_A Human adenosine A2A rec 99.3 5.4E-12 1.8E-16 82.3 6.9 68 5-72 403-474 (488)
5 4eiy_A Adenosine receptor A2A/ 99.3 6.9E-12 2.4E-16 81.1 6.6 66 5-70 362-431 (447)
6 3vw7_A Proteinase-activated re 99.3 3.7E-13 1.3E-17 87.9 -0.3 42 27-68 427-468 (484)
7 3v2y_A Sphingosine 1-phosphate 99.3 3.4E-12 1.2E-16 85.0 3.9 43 27-69 455-497 (520)
8 3pbl_A D(3) dopamine receptor, 99.3 1.4E-11 4.7E-16 80.4 6.6 64 5-68 409-475 (481)
9 3uon_A Human M2 muscarinic ace 99.2 1.1E-11 3.9E-16 80.5 5.5 44 25-68 418-461 (467)
10 2lnl_A C-X-C chemokine recepto 99.2 8.1E-12 2.8E-16 77.5 3.7 39 28-66 257-295 (296)
11 3rze_A Histamine H1 receptor, 99.2 1.9E-11 6.5E-16 79.1 3.7 43 26-68 404-446 (452)
12 1u19_A Rhodopsin; G protein-co 99.1 2.8E-10 9.5E-15 71.4 8.6 44 24-67 283-326 (349)
13 4dkl_A MU-type opioid receptor 99.1 2.8E-11 9.7E-16 78.4 4.1 39 27-65 418-456 (464)
14 4amj_A Beta-1 adrenergic recep 99.1 1.4E-10 4.9E-15 71.6 6.4 62 6-68 241-304 (315)
15 2ks9_A Substance-P receptor; w 99.1 3.2E-10 1.1E-14 71.7 6.8 42 26-67 283-324 (364)
16 3odu_A C-X-C chemokine recepto 99.0 6.3E-12 2.2E-16 82.4 -3.0 42 28-69 456-497 (502)
17 3sn6_R Lysozyme, beta-2 adrene 99.0 8.5E-10 2.9E-14 73.2 5.2 43 25-68 452-494 (514)
18 4ea3_A Fusion protein of nocic 98.9 6E-10 2.1E-14 72.5 3.7 39 29-67 374-412 (434)
19 2z73_A Rhodopsin; visual pigme 98.9 5.3E-09 1.8E-13 68.1 7.3 40 26-65 293-332 (448)
20 2ket_A Cathelicidin-6; antimic 71.7 2.7 9.1E-05 16.4 1.5 15 52-66 3-17 (27)
21 3noh_A Putative peptide bindin 45.1 9.3 0.00032 21.3 1.2 23 42-64 26-48 (139)
22 3eyi_A Z-DNA-binding protein 1 45.0 4.2 0.00015 20.3 -0.1 24 30-53 28-52 (72)
No 1
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=99.50 E-value=1e-15 Score=101.78 Aligned_cols=40 Identities=28% Similarity=0.590 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcccCC
Q psy4506 29 IVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFP 68 (83)
Q Consensus 29 ~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~~~ 68 (83)
...++.||+++|||+||+||++.|++||++++++++|+..
T Consensus 451 ~~~~~~~L~Y~NS~iNPiIY~~~n~~FR~aFk~iL~C~C~ 490 (510)
T 4grv_A 451 FYMLTNALAYASSAINPILYNLVSANFRQVFLSTLACLCP 490 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCC
Confidence 4567889999999999999999999999999999987544
No 2
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=99.35 E-value=9.7e-13 Score=87.12 Aligned_cols=65 Identities=32% Similarity=0.532 Sum_probs=45.0
Q ss_pred cchhhHHHHH-HHHHhhcC--CCCCCcHHHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcccCC
Q psy4506 3 LTGTNLGIYL-YLISTLCG--PPCDCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFP 68 (83)
Q Consensus 3 ~~~~~i~~~~-~~i~~~~~--~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~~~ 68 (83)
++++|+++|. +.+..+.. ..+..+.....+..|++++||++||+||++ +++||++++++++|+..
T Consensus 413 vv~~F~icWlP~~i~~l~~~~~~~~~~~~~~~~~~~L~y~NS~iNPiIY~~-n~~FR~af~~il~~~~~ 480 (500)
T 2rh1_A 413 IMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLCLRRS 480 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHGGGTHHHHGGG-SHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHhhcchhhhc-cHHHHHHHHHHHhhhcc
Confidence 3445555444 44432211 122346778888999999999999999996 99999999999976543
No 3
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=99.35 E-value=2.4e-13 Score=62.46 Aligned_cols=36 Identities=28% Similarity=0.541 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcc
Q psy4506 30 VTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSF 65 (83)
Q Consensus 30 ~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~ 65 (83)
+.++.+++.+||++||+||++.+++||+++++++++
T Consensus 3 ~~~~~~l~~~ns~lNPiIY~~~~~~fr~~~~~~~~~ 38 (40)
T 2koe_A 3 FAFASMLCLLNSTVNPIIYALRSKDLRHAFRSMFPS 38 (40)
T ss_dssp HHHHHHHHHHHHHSSTTTTBTTBHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhhh
Confidence 467788999999999999999999999999998764
No 4
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=99.31 E-value=5.4e-12 Score=82.25 Aligned_cols=68 Identities=24% Similarity=0.335 Sum_probs=48.7
Q ss_pred hhhHHHHHHHHH----hhcCCCCCCcHHHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcccCCCccc
Q psy4506 5 GTNLGIYLYLIS----TLCGPPCDCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFPWCFS 72 (83)
Q Consensus 5 ~~~i~~~~~~i~----~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~~~~~~~ 72 (83)
..+++|+++.+. .+.+...........++.+++++||++||+||++++++||++++++++++..+...
T Consensus 403 ~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~l~~~~~~~~~~ 474 (488)
T 3eml_A 403 LFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQE 474 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHhhhHHHHHHHHhccCccccccHHHHHHHHHHHHHHhhhchhhhhhcCHHHHHHHHHHHhhcccccCC
Confidence 344455555443 23222234456677888999999999999999999999999999999876654433
No 5
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=99.29 E-value=6.9e-12 Score=81.09 Aligned_cols=66 Identities=24% Similarity=0.357 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHH----hhcCCCCCCcHHHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcccCCCc
Q psy4506 5 GTNLGIYLYLIS----TLCGPPCDCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFPWC 70 (83)
Q Consensus 5 ~~~i~~~~~~i~----~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~~~~~ 70 (83)
..+++|.++.+. .+.+...........++.+++++||++||+||++.+++||++++++++++..+.
T Consensus 362 ~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~~~~~r~ 431 (447)
T 4eiy_A 362 LFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQ 431 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTC---
T ss_pred hhheeccHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHhccchhhhHhccHHHHHHHHHHHHHHHhcc
Confidence 344455555443 222222334566778899999999999999999999999999999998765433
No 6
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=99.26 E-value=3.7e-13 Score=87.88 Aligned_cols=42 Identities=12% Similarity=0.256 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcccCC
Q psy4506 27 EYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFP 68 (83)
Q Consensus 27 ~~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~~~ 68 (83)
.....++.+++++||++||+||++++++||++++++++|+..
T Consensus 427 ~~~~~~~~~L~~~ns~iNPiIY~~~~~~fR~~~~~ll~~~~~ 468 (484)
T 3vw7_A 427 YFAYLLCVCVSSISCCIDPLIYYYASSECQRYVYSILCCKES 468 (484)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHTSSCC-------------
T ss_pred HHHHHHHHHHHHhccccchHHHHHhhHHHHHHHHHHHhhccC
Confidence 345568889999999999999999999999999999987654
No 7
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=99.25 E-value=3.4e-12 Score=85.01 Aligned_cols=43 Identities=21% Similarity=0.382 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcccCCC
Q psy4506 27 EYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFPW 69 (83)
Q Consensus 27 ~~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~~~~ 69 (83)
.....++.+++++|||+||+||++++++||++++++++++...
T Consensus 455 ~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~ 497 (520)
T 3v2y_A 455 LFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIMGRPLEV 497 (520)
T ss_dssp TTSCHHHHHHHHHGGGTHHHHHHHHCHHHHHHHHTTCCSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhccc
Confidence 3445677889999999999999999999999999999876643
No 8
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=99.25 E-value=1.4e-11 Score=80.40 Aligned_cols=64 Identities=30% Similarity=0.576 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHhh---cCCCCCCcHHHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcccCC
Q psy4506 5 GTNLGIYLYLISTL---CGPPCDCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFP 68 (83)
Q Consensus 5 ~~~i~~~~~~i~~~---~~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~~~ 68 (83)
..+++|.++.+..+ ....+........+..+++++|+++||+||++++++||++++++++|+.+
T Consensus 409 ~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~c~~~ 475 (481)
T 3pbl_A 409 AFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSCGRP 475 (481)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC---
T ss_pred HHHHHhhHHHHHHHHHhccccccCcHHHHHHHHHHHHHhhccchHHHHHcCHHHHHHHHHHHhccCc
Confidence 34455555544322 22344456778888999999999999999999999999999999986543
No 9
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=99.23 E-value=1.1e-11 Score=80.46 Aligned_cols=44 Identities=36% Similarity=0.709 Sum_probs=37.1
Q ss_pred CcHHHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcccCC
Q psy4506 25 CPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFP 68 (83)
Q Consensus 25 ~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~~~ 68 (83)
.......+..+++++|+++||+||++++++||++++++++|+.+
T Consensus 418 ~~~~~~~i~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~c~~~ 461 (467)
T 3uon_A 418 IPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLLMCHYK 461 (467)
T ss_dssp SCHHHHHHHHHHHHHTTTHHHHHHHHHCHHHHHHHHHHCC----
T ss_pred cchHHHHHHHHHHHHhhhhhhHHHHHcCHHHHHHHHHHHhhhcc
Confidence 45777889999999999999999999999999999999976554
No 10
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=99.21 E-value=8.1e-12 Score=77.48 Aligned_cols=39 Identities=28% Similarity=0.640 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhccc
Q psy4506 28 YIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFV 66 (83)
Q Consensus 28 ~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~ 66 (83)
....++.+++++||++||+||++++++||++++++++|+
T Consensus 257 ~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~ll~cr 295 (296)
T 2lnl_A 257 RALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAMH 295 (296)
T ss_dssp HHHHHHHHHGGGGGTHHHHHHHHHCSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence 345678889999999999999999999999999999864
No 11
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=99.16 E-value=1.9e-11 Score=79.10 Aligned_cols=43 Identities=37% Similarity=0.738 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcccCC
Q psy4506 26 PEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFP 68 (83)
Q Consensus 26 ~~~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~~~ 68 (83)
......+..+++++||++||+||++++++||++++++++|+..
T Consensus 404 ~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~~~~~ 446 (452)
T 3rze_A 404 NEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRILHIRSG 446 (452)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTC---
T ss_pred cHHHHHHHHHHHHHHhcccchhhhhccHHHHHHHHHHHHhccc
Confidence 3455668889999999999999999999999999999987554
No 12
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=99.15 E-value=2.8e-10 Score=71.40 Aligned_cols=44 Identities=27% Similarity=0.425 Sum_probs=37.7
Q ss_pred CCcHHHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcccC
Q psy4506 24 DCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVF 67 (83)
Q Consensus 24 ~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~~ 67 (83)
........+..+++.+||++||+||.+.+++||++++++++|+.
T Consensus 283 ~~~~~~~~~~~~l~~~ns~~nPiiY~~~~~~fR~~~~~~~~c~~ 326 (349)
T 1u19_A 283 DFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGK 326 (349)
T ss_dssp CCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHTSSC
T ss_pred ccchHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHhcccC
Confidence 33556677888899999999999999999999999999997644
No 13
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=99.14 E-value=2.8e-11 Score=78.42 Aligned_cols=39 Identities=28% Similarity=0.565 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcc
Q psy4506 27 EYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSF 65 (83)
Q Consensus 27 ~~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~ 65 (83)
.....++.+++++||++||+||++++++||+++++++++
T Consensus 418 ~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~lc~~ 456 (464)
T 4dkl_A 418 TVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFCIP 456 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHhhhchhHHHHHHhhHHHHHHHHHHhcc
Confidence 445667888999999999999999999999999998554
No 14
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=99.12 E-value=1.4e-10 Score=71.62 Aligned_cols=62 Identities=29% Similarity=0.596 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHhhcC--CCCCCcHHHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcccCC
Q psy4506 6 TNLGIYLYLISTLCG--PPCDCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFP 68 (83)
Q Consensus 6 ~~i~~~~~~i~~~~~--~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~~~ 68 (83)
.+++|.++.+..... .....+.....+..+++++||++||++|+ ++++||++++++++|+..
T Consensus 241 f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nPiiY~-~~~~fR~~~~~~l~~~~~ 304 (315)
T 4amj_A 241 FTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAFPRK 304 (315)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSSCHHHHHHHHHHHHHGGGTHHHHGG-GSHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhccccHHHHc-CcHHHHHHHHHHhCCCCc
Confidence 445555554432211 12223566777888899999999999999 899999999999986543
No 15
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=99.08 E-value=3.2e-10 Score=71.74 Aligned_cols=42 Identities=21% Similarity=0.544 Sum_probs=36.7
Q ss_pred cHHHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcccC
Q psy4506 26 PEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVF 67 (83)
Q Consensus 26 ~~~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~~ 67 (83)
......+..+++++||++||+||++.+++||++++++++++.
T Consensus 283 ~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~ 324 (364)
T 2ks9_A 283 IQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCP 324 (364)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcC
Confidence 355667788899999999999999999999999999997653
No 16
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=99.02 E-value=6.3e-12 Score=82.37 Aligned_cols=42 Identities=24% Similarity=0.524 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcccCCC
Q psy4506 28 YIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFPW 69 (83)
Q Consensus 28 ~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~~~~ 69 (83)
....++.+++++||++||+||++++++||++++++++|+.++
T Consensus 456 ~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~~~~~~ 497 (502)
T 3odu_A 456 KWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPL 497 (502)
T ss_dssp HHHHHHHHHHTTHHHHHHHHTTTTTCCCCCCHHHHHSSCSSC
T ss_pred HHHHHHHHHHHHhcccchhhhhhcCHHHHHHHHHHhccCCch
Confidence 345678899999999999999999999999999999876543
No 17
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=98.95 E-value=8.5e-10 Score=73.18 Aligned_cols=43 Identities=40% Similarity=0.678 Sum_probs=35.1
Q ss_pred CcHHHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcccCC
Q psy4506 25 CPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVFP 68 (83)
Q Consensus 25 ~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~~~ 68 (83)
.......+..+++++||++||+||. ++++||++++++++++..
T Consensus 452 ~~~~~~~~~~~l~~~ns~~NPiIY~-~~~~fR~~~~~~l~~~~~ 494 (514)
T 3sn6_R 452 IRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRS 494 (514)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHTTCC----
T ss_pred cchHHHHHHHHHHHHHHhhhHHhhc-CCHHHHHHHHHHhCcCcc
Confidence 3566778888999999999999999 899999999999976554
No 18
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=98.93 E-value=6e-10 Score=72.50 Aligned_cols=39 Identities=31% Similarity=0.660 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcccC
Q psy4506 29 IVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSFVF 67 (83)
Q Consensus 29 ~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~~~ 67 (83)
...+..+++++||++||+||.+++++||++++++++++.
T Consensus 374 ~~~~~~~l~~~ns~lNPiIY~~~~~~fR~~~~~~~~~~~ 412 (434)
T 4ea3_A 374 ILRFCTALGYVNSCLNPILYAFLDENFKACFRKFCCASA 412 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 445667789999999999999999999999999987544
No 19
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=98.90 E-value=5.3e-09 Score=68.07 Aligned_cols=40 Identities=23% Similarity=0.477 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHHHhhhhhhhHhHHhccHHHHHHHHHHhcc
Q psy4506 26 PEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTLSF 65 (83)
Q Consensus 26 ~~~~~~~~~~l~~~ns~~nP~iY~~~~~~~r~~~~~~~~~ 65 (83)
......+..+++.+|+++||+||.+.+++||+++++++++
T Consensus 293 ~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~~ 332 (448)
T 2z73_A 293 TPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPW 332 (448)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHCHHHHHHHHHHCGG
T ss_pred ChHHHHHHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHH
Confidence 4556677788999999999999999999999999999853
No 20
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=71.74 E-value=2.7 Score=16.44 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=11.4
Q ss_pred cHHHHHHHHHHhccc
Q psy4506 52 NRDFREAFKNTLSFV 66 (83)
Q Consensus 52 ~~~~r~~~~~~~~~~ 66 (83)
-++||+.+++++...
T Consensus 3 fkrfrkkfkklfkkl 17 (27)
T 2ket_A 3 FKRFRKKFKKLFKKL 17 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 367899999888653
No 21
>3noh_A Putative peptide binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Ruminococcus gnavus}
Probab=45.09 E-value=9.3 Score=21.25 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.0
Q ss_pred hhhhHhHHhccHHHHHHHHHHhc
Q psy4506 42 VLNPLMYAYFNRDFREAFKNTLS 64 (83)
Q Consensus 42 ~~nP~iY~~~~~~~r~~~~~~~~ 64 (83)
|+||.+=.+.+.++|+.++.+-.
T Consensus 26 ~iNp~ld~~~~~~~R~~Lka~~~ 48 (139)
T 3noh_A 26 CMNPLLDKLSDEDIREQLKAFVT 48 (139)
T ss_dssp EECTTSGGGCCHHHHHHHHHHHT
T ss_pred EeccccCccccHHHHHHHHHHhc
Confidence 68888888899999999999864
No 22
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=44.98 E-value=4.2 Score=20.29 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhhh-hhhHhHHhccH
Q psy4506 30 VTILFWIGYFNSV-LNPLMYAYFNR 53 (83)
Q Consensus 30 ~~~~~~l~~~ns~-~nP~iY~~~~~ 53 (83)
..++.-++.=.+= +||-+|++.++
T Consensus 28 L~IAK~LGlktAK~VNp~LY~m~~~ 52 (72)
T 3eyi_A 28 LVIAQALGMRTAKDVNRDLYRMKSR 52 (72)
T ss_dssp HHHHHHTTCCSGGGTHHHHHHHHHT
T ss_pred HHHHHHhCcchhhhcCHHHHHHHHc
Confidence 3445555544555 99999998765
Done!