RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4506
         (83 letters)



>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
          Length = 323

 Score = 28.3 bits (63), Expect = 0.33
 Identities = 11/34 (32%), Positives = 22/34 (64%)

Query: 28  YIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKN 61
           Y + I   I + +  +NP++YA+  ++F++ FKN
Sbjct: 272 YSIDIAELISFVHCCVNPIIYAFVGKNFKKVFKN 305


>gnl|CDD|216016 pfam00602, Flu_PB1, Influenza RNA-dependent RNA polymerase subunit
           PB1.  Two GTP binding sites exist in this protein.
          Length = 740

 Score = 27.5 bits (61), Expect = 0.74
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 5/38 (13%)

Query: 39  FNSVLNP----LMYAYFNRDFREAFKNTLSFVFPWCFS 72
           +N  LNP     M  Y  +D  +  K  LS + P  FS
Sbjct: 310 WNECLNPEAMLAMLTYITKDSPQWMKELLS-IAPVLFS 346


>gnl|CDD|181013 PRK07516, PRK07516, acetyl-CoA acetyltransferase; Provisional.
          Length = 389

 Score = 27.2 bits (61), Expect = 0.89
 Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 2/25 (8%)

Query: 40  NSVLNPLMYAYFNRDFREAFKNTLS 64
           N V NP  YA   +D    F  T+S
Sbjct: 175 NGVANP--YAQMRKDLGFEFCRTVS 197


>gnl|CDD|223074 PHA03396, lef-9, late expression factor 9; Provisional.
          Length = 493

 Score = 27.2 bits (61), Expect = 0.92
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 36 IGYFNSVLNPLMYAYFNRDFREAFKNTLS 64
          I YFNS++  L+  Y   + R    + LS
Sbjct: 51 INYFNSLIEQLISVYQECELRNEHTDLLS 79


>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
           This family contains, amongst other G-protein-coupled
           receptors (GCPRs), members of the opsin family, which
           have been considered to be typical members of the
           rhodopsin superfamily. They share several motifs, mainly
           the seven transmembrane helices, GCPRs of the rhodopsin
           superfamily. All opsins bind a chromophore, such as
           11-cis-retinal. The function of most opsins other than
           the photoisomerases is split into two steps: light
           absorption and G-protein activation. Photoisomerases, on
           the other hand, are not coupled to G-proteins - they are
           thought to generate and supply the chromophore that is
           used by visual opsins.
          Length = 251

 Score = 26.5 bits (59), Expect = 1.5
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 14  LISTLCGPPCDCPEYIVTILF-WIGYFNSVLNPLMY 48
           L+ +LC            ++  W+ Y NS LNP++Y
Sbjct: 216 LLDSLCPLSIWRLLPTALLITLWLAYVNSCLNPIIY 251


>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase.
          Length = 539

 Score = 25.4 bits (55), Expect = 3.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 1   MGLTGTNLGIYLYLISTLCGPPCDCPEY 28
           +G      GI+L++ +   G  C CPEY
Sbjct: 309 LGNIAKKYGIWLHVDAAYAGNACICPEY 336


>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine
           Kinase, Cyclin-Dependent protein Kinase 12.
           Serine/Threonine Kinases (STKs), Cyclin-Dependent
           protein Kinase 12 (CDK12) subfamily, catalytic (c)
           domain. STKs catalyze the transfer of the
           gamma-phosphoryl group from ATP to serine/threonine
           residues on protein substrates. The CDK12 subfamily is
           part of a larger superfamily that includes the catalytic
           domains of other protein STKs, protein tyrosine kinases,
           RIO kinases, aminoglycoside phosphotransferase, choline
           kinase, and phosphoinositide 3-kinase. CDKs belong to a
           large family of STKs that are regulated by their cognate
           cyclins. Together, they are involved in the control of
           cell-cycle progression, transcription, and neuronal
           function. CDK12 is also called Cdc2-related protein
           kinase 7 (CRK7) or Cdc2-related kinase
           arginine/serine-rich (CrkRS). It is a unique CDK that
           contains an arginine/serine-rich (RS) domain, which is
           predominantly found in splicing factors. CDK12 is widely
           expressed in tissues. It interacts with cyclins L1 and
           L2, and plays roles in regulating transcription and
           alternative splicing.
          Length = 302

 Score = 24.7 bits (54), Expect = 6.9
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 10/50 (20%)

Query: 12  LYLISTLCGPPCDC--PEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAF 59
           L LIS LCG PC    P+ I      + YFN++     Y    R  RE F
Sbjct: 227 LELISRLCGSPCPAVWPDVIK-----LPYFNTMKPKKQY---RRRLREEF 268


>gnl|CDD|227104 COG4763, COG4763, Predicted membrane protein [Function unknown].
          Length = 388

 Score = 24.5 bits (53), Expect = 7.2
 Identities = 5/32 (15%), Positives = 7/32 (21%)

Query: 34 FWIGYFNSVLNPLMYAYFNRDFREAFKNTLSF 65
            + YF     P     F       F+     
Sbjct: 63 CRMPYFFLYSGPFRMPVFFFISGYLFRRRRYI 94


>gnl|CDD|234038 TIGR02865, spore_II_E, stage II sporulation protein E.  Stage II
           sporulation protein E (SpoIIE) is a multiple membrane
           spanning protein with two separable functions. It plays
           a role in the switch to polar cell division during
           sporulation. By means of it protein phosphatase
           activity, located in the C-terminal region, it activates
           sigma-F. All proteins that score above the trusted
           cutoff to this model are found in endospore-forming
           Gram-positive bacteria. Surprisingly, a sequence from
           the Cyanobacterium-like (and presumably
           non-spore-forming) photosynthesizer Heliobacillus
           mobilis is homologous, and scores between the trusted
           and noise cutoffs [Cellular processes, Sporulation and
           germination].
          Length = 764

 Score = 24.7 bits (54), Expect = 7.9
 Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 39  FNSVLNPLM--YAYFNRDFREAFKNTLSFVFPWCFSCFKNAHT 79
           F  + N L+    +       +    L ++F +   C KN  T
Sbjct: 102 FGYLQNKLVTPLDFILSIVEASLSFVLYYIFNYSIPCLKNGRT 144


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.332    0.147    0.520 

Gapped
Lambda     K      H
   0.267   0.0741    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,151,147
Number of extensions: 326068
Number of successful extensions: 419
Number of sequences better than 10.0: 1
Number of HSP's gapped: 418
Number of HSP's successfully gapped: 24
Length of query: 83
Length of database: 10,937,602
Length adjustment: 52
Effective length of query: 31
Effective length of database: 8,631,194
Effective search space: 267567014
Effective search space used: 267567014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.2 bits)