RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4506
         (83 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 39.6 bits (91), Expect = 8e-06
 Identities = 12/54 (22%), Positives = 19/54 (35%)

Query: 10  IYLYLISTLCGPPCDCPEYIVTILFWIGYFNSVLNPLMYAYFNRDFREAFKNTL 63
                         D     +TI  +    ++V NP++Y   N+ FR     TL
Sbjct: 268 YAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL 321


>d1gxya_ d.166.1.3 (A:) Eukaryotic mono-ADP-ribosyltransferase
           ART2.2 {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 223

 Score = 24.5 bits (53), Expect = 1.7
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 47  MYAYFNRDFREAFKNTLSFVFP 68
           +   FNR  RE  +N   F + 
Sbjct: 79  IAVDFNRAVREFKENPGQFHYK 100


>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse
          mammary tumor virus [TaxId: 11757]}
          Length = 26

 Score = 22.3 bits (47), Expect = 2.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)

Query: 68 PWCFSCFKNAH 78
          P CFSC K  H
Sbjct: 3  PVCFSCGKTGH 13


>d1ne9a2 d.108.1.4 (A:165-335) Peptidyltransferase FemX {Weissella
           viridescens [TaxId: 1629]}
          Length = 171

 Score = 23.6 bits (50), Expect = 3.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 32  ILFWIGYFNSVLNPLMYAYFNRD 54
              +IG  + VL+P +YA   +D
Sbjct: 149 PREYIGEIDKVLDPEVYAELVKD 171


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.332    0.147    0.520 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 332,903
Number of extensions: 13427
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 10
Length of query: 83
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 34
Effective length of database: 1,734,826
Effective search space: 58984084
Effective search space used: 58984084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.0 bits)