BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4509
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 34 GDDAYFTARYKT-----ADVLEFSSFLMKTCERLVTSGRFSCTEPTSLLARSYYELLENK 88
G+ FTA T AD LE + +KT RLV G P SL+AR +E +
Sbjct: 265 GEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGG---SAAPRSLIARFERMGVEVR 321
Query: 89 QPILGSSTACIVILN 103
Q + T+ +V+ N
Sbjct: 322 QGYGLTETSPVVVQN 336
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE
COMPLEXED With Zn2+
Length = 304
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 210 TACIVILNKETSTLYTANIGDSGFVIVRRGKVI-----HRSEEQQHY 251
TA + +L+ + LY AN GDS V+ R GK + H+ E+ Y
Sbjct: 133 TAVVALLHGKD--LYVANAGDSRCVVCRNGKALEMSFDHKPEDTVEY 177
>pdb|3S4Y|A Chain A, Crystal Structure Of Human Thiamin Pyrophosphokinase 1
pdb|3S4Y|B Chain B, Crystal Structure Of Human Thiamin Pyrophosphokinase 1
Length = 247
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 13/105 (12%)
Query: 93 GSSTACIVILNKETSTLCTANIGNSIVRVADGVGGWRNYGIDPGEFSSFLMKTCERLVTS 152
G+ C+VILN+ +++R G R Y I GE SFL + +
Sbjct: 19 GNLKYCLVILNQPLDNYFRHLWNKALLRACADGGANRLYDITEGERESFLPE-----FIN 73
Query: 153 GRFSCTEPTSLLARSYY-----ELLENKQPILGSSTTCIVILNKE 192
G F P R YY EL+ T C+ +L K+
Sbjct: 74 GDFDSIRPE---VREYYATKGCELISTPDQDHTDFTKCLKMLQKK 115
>pdb|1CRL|A Chain A, Insights Into Interfacial Activation From An 'open'
Structure Of Candida Rugosa Lipase
pdb|1TRH|A Chain A, Two Conformational States Of Candida Rugosa Lipase
pdb|3RAR|A Chain A, X-Ray Structure Of A Bound Phosphonate Transition State
Analog And Enantioselectivity Of Candida Rugosa Lipase
Toward Chiral Carboxylic Acids
Length = 534
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 16/163 (9%)
Query: 190 NKETSTLYTANIGDSIVRSSTACIVILNKETSTL--YTANIGDSGFVIVRRGKVIHRSEE 247
+ E TL TA GD I + S ILN T +A +GD GF + RR + H +
Sbjct: 371 DAEIDTLMTAYPGD-ITQGSPFDTGILNALTPQFKRISAVLGDLGFTLARRYFLNHYTGG 429
Query: 248 QQHYFNTPFQLSLPPLS--HTTQVLESCKRRG---LVVHGDVILLATDGVFDNVPDSLLL 302
++ F + LP L H+ ++ G L+ + I ATD D LL+
Sbjct: 430 TKYSFLSKQLSGLPVLGTFHSNDIVFQDYLLGSGSLIYNNAFIAFATD--LDPNTAGLLV 487
Query: 303 AELVRAQGSKDPMQLQLVANTIALMA-----RTLAFDETYMSP 340
S+ L ++ N + L RT +D + +P
Sbjct: 488 KWPEYTSSSQSGNNLMMI-NALGLYTGKDNFRTAGYDALFSNP 529
>pdb|1LPM|A Chain A, A Structural Basis For The Chiral Preferences Of Lipases
pdb|1LPN|A Chain A, Analogs Of Reaction Intermediates Identify A Unique
Substrate Binding Site In Candida Rugosa Lipase
pdb|1LPO|A Chain A, Analogs Of Reaction Intermediates Identify A Unique
Substrate Binding Site In Candida Rugosa Lipase
pdb|1LPP|A Chain A, Analogs Of Reaction Intermediates Identify A Unique
Substrate Binding Site In Candida Rugosa Lipase
pdb|1LPS|A Chain A, A Structural Basis For The Chiral Preferences Of Lipases
Length = 549
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 190 NKETSTLYTANIGDSIVRSSTACIVILNKETSTL--YTANIGDSGFVIVRRGKVIHRSEE 247
+ E TL TA GD I + S ILN T +A +GD GF + RR + H +
Sbjct: 386 DAEIDTLMTAYPGD-ITQGSPFDTGILNALTPQFKRISAVLGDLGFTLARRYFLNHYTGG 444
Query: 248 QQHYFNTPFQLSLPPLS--HTTQVLESCKRRG---LVVHGDVILLATD 290
++ F + LP L H+ ++ G L+ + I ATD
Sbjct: 445 TKYSFLSKQLSGLPVLGTFHSNDIVFQDYLLGSGSLIYNNAFIAFATD 492
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 15 VSGIPKDFSNNKMFQLNKYGDDAYFTARYKTADVLEFSSFLMKTCERLVTSGRFSCTEPT 74
+ GI DF + K D Y+ + F ++M+ +V SG + T PT
Sbjct: 170 IGGIESDFYEGPL-TYEKLNHDLYWQIDLD----IHFGKYVMQKANAVVDSGTSTITAPT 224
Query: 75 SLLARSYYELLENKQPIL 92
S L + + ++ K P L
Sbjct: 225 SFLNKFFRDMNVIKVPFL 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,985,308
Number of Sequences: 62578
Number of extensions: 367625
Number of successful extensions: 774
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 770
Number of HSP's gapped (non-prelim): 12
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)