RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4509
(369 letters)
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C,
catalytic domain. The protein architecture and deduced
catalytic mechanism of PP2C phosphatases are similar to
the PP1, PP2A, PP2B family of protein Ser/Thr
phosphatases, with which PP2C shares no sequence
similarity.
Length = 252
Score = 62.0 bits (151), Expect = 5e-11
Identities = 41/183 (22%), Positives = 66/183 (36%), Gaps = 60/183 (32%)
Query: 209 STACIVILNKETSTLYTANIGDSGFVIVRRGKVIHRSEEQ-------------------Q 249
STA + +++ LY AN+GDS V+ R GK + +E+
Sbjct: 102 STAVVALISGNK--LYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVIN 159
Query: 250 HYFNTPFQLS--------LPPLSHTTQVLESCKRRGLVVHGDVILLATDGVFDNVPDSLL 301
N LS P +S V L D ++LA+DG++D + + +
Sbjct: 160 GRVNGVLALSRAIGDFFLKPYVSAEPDV----TVVELTEKDDFLILASDGLWDVLSNQEV 215
Query: 302 LAELVRAQGSKDPMQLQLVANTIALMARTLAFDETYMSPFAIQARANGISTQGGKPDDIT 361
+ ++VR SKDP + A D G D+IT
Sbjct: 216 V-DIVRKHLSKDPKE-----------AAKRLIDLAL---------------ARGSKDNIT 248
Query: 362 VLL 364
V++
Sbjct: 249 VVV 251
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal
transduction mechanisms].
Length = 262
Score = 60.4 bits (147), Expect = 2e-10
Identities = 60/264 (22%), Positives = 99/264 (37%), Gaps = 76/264 (28%)
Query: 121 VADGVGGWRNYGIDPGEF-SSFLMKTCERLVTSGRFSCTEPTSLLARSYYELLENKQPIL 179
VADG+GG GE S ++ RL + L S ELL+
Sbjct: 43 VADGMGGHAA-----GEVASKLAVEALARLFDE------TNFNSLNESLEELLKEA---- 87
Query: 180 GSSTTCIVILNKETSTLYTANIGDSIV-RSSTACIVILNKETSTLYTANIGDSGFVIVRR 238
I+ N+ + + V T +++L + LY AN+GDS ++R
Sbjct: 88 ------ILKANEA---IAEEGQLNEDVRGMGTTLVLLLIRGNK-LYVANVGDSRAYLLRD 137
Query: 239 GKVIHRSEEQ-------QHYFNTPFQL-SLPPLSHTTQVLESCKRRGLVVH--------G 282
G++ +E+ Q TP + S P + T+ L L G
Sbjct: 138 GELKQLTEDHSLVNRLEQRGIITPEEARSHPRRNALTRALGD--FDLLEPDITELELEPG 195
Query: 283 DVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANT-IALMARTLAFDETYMSPF 341
D +LL +DG++D V D ++ ++++ + Q A+ I L
Sbjct: 196 DFLLLCSDGLWDVVSDDEIV-DILKNSET-----PQEAADKLIEL--------------- 234
Query: 342 AIQARANGISTQGGKPDDITVLLA 365
+ +GG PD+ITV+L
Sbjct: 235 ---------ALEGGGPDNITVVLV 249
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic
domain; The protein architecture and deduced catalytic
mechanism of PP2C phosphatases are similar to the PP1,
PP2A, PP2B family of protein Ser/Thr phosphatases, with
which PP2C shares no sequence similarity.
Length = 254
Score = 55.0 bits (133), Expect = 1e-08
Identities = 46/267 (17%), Positives = 91/267 (34%), Gaps = 73/267 (27%)
Query: 121 VADGVGGWRNYGIDPGEFSSFLMKTCERLVTSGRFSCTEPTSLLARSYYELLENKQPILG 180
V DG GG L++ E +T + L +++ L +++
Sbjct: 35 VFDGHGGHAAGEFASKLLVEELLEELEETLTLSE---EDIEEALRKAF--LRADEE---- 85
Query: 181 SSTTCIVILNKETSTLYTANIGDSIVRSSTACIVILNKETSTLYTANIGDSGFVIVRRGK 240
IL + A G +TA + ++ + LY AN+GDS V+ R G+
Sbjct: 86 -------ILEEAQDEPDDARSG------TTAVVALIRG--NKLYVANVGDSRAVLCRNGE 130
Query: 241 VI-----H---RSEEQQHYFNTPFQLSLPPLSHTTQVLES----CKRRGLVV-------- 280
+ H EE++ ++S + V + + G+
Sbjct: 131 AVQLTKDHKPVNEEERERIEKAGGRVSNGRVPGVLAVTRALGDFDLKPGVSAEPDVTVVK 190
Query: 281 ---HGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTLAFDETY 337
D ++LA+DG++D + + + + +D + A + +A
Sbjct: 191 LTEDDDFLILASDGLWDVLSNQEAVDIVRSELAKEDLQE---AAQELVDLAL-------- 239
Query: 338 MSPFAIQARANGISTQGGKPDDITVLL 364
+ G D+ITV++
Sbjct: 240 ---------------RRGSHDNITVVV 251
>gnl|CDD|214624 smart00331, PP2C_SIG, Sigma factor PP2C-like phosphatases.
Length = 193
Score = 46.2 bits (110), Expect = 5e-06
Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 15/118 (12%)
Query: 207 RSSTACIVILNKETSTLYTANIGDSGFVIVRRGKVIHRSEEQQHYFNTPFQLSLPPLSHT 266
+T + + + TL AN G S ++R + + L L P
Sbjct: 85 MFATLFLALYDFAGGTLSYANAGHSPPYLLRAD-----GGLVEDLDDLGAPLGLEPDVEV 139
Query: 267 TQVLESCKRRGLVVHGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTI 324
+ + GD++LL TDG+ + L L GS +A I
Sbjct: 140 DVRELT------LEPGDLLLLYTDGLTEARNPERLEELLEELLGSPP----AEIAQRI 187
>gnl|CDD|219343 pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This
family contains a number of bacterial stage II
sporulation E proteins (EC:3.1.3.16). These are required
for formation of a normal polar septum during
sporulation. The N-terminal region is hydrophobic and is
expected to contain up to 12 membrane-spanning segments.
Length = 192
Score = 37.3 bits (87), Expect = 0.005
Identities = 37/162 (22%), Positives = 54/162 (33%), Gaps = 34/162 (20%)
Query: 207 RSSTACIVILNKETSTLYTANIGDSGFVIVR--RGKVIHRSEEQQHYFNTPFQLSLPPLS 264
R +TA + + + ET TL AN G +++R G V P + LP
Sbjct: 59 RFATAVLAVYDPETGTLEYANAGHPPPLLLRPDGGVVELLESP-----GLPLGV-LPDAP 112
Query: 265 HTTQVLESCKRRGLVVHGDVILLATDGVFDN-VPDSLLLAELVRAQGSKDPMQLQLVANT 323
+ T + GD +LL TDG+ + PD L + L
Sbjct: 113 YETAEFP-------LEPGDTLLLYTDGLTEARDPDGELFGLERLLALLAERHGLSPEELL 165
Query: 324 IALMARTLAFDETYMSPFAIQARANGISTQGGKPDDITVLLA 365
AL+ L G DDIT+L+
Sbjct: 166 DALLEDLLRLGG------------------GELEDDITLLVL 189
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C. Protein phosphatase 2C is
a Mn++ or Mg++ dependent protein serine/threonine
phosphatase.
Length = 252
Score = 36.6 bits (85), Expect = 0.012
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 209 STACIVILNKETSTLYTANIGDSGFVIVRRGKVIHR 244
STA + ++ LY AN+GDS V+ R G I +
Sbjct: 100 STAVVALIRG--QKLYVANVGDSRAVLCRNGNAIKQ 133
Score = 34.6 bits (80), Expect = 0.047
Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 28/155 (18%)
Query: 180 GSSTTCIVILNKETSTLYTANIGDS---IVRSSTACIVILNKE---TSTLYTANIGDSGF 233
GS+ +I + LY AN+GDS + R+ A I L ++ ++ I +G
Sbjct: 99 GSTAVVALIRGQ---KLYVANVGDSRAVLCRNGNA-IKQLTEDHKPSNEDERRRIRGAGG 154
Query: 234 VIVRRGKVI-----HRSEEQQHYF-NTPFQLSLPPLSHTTQVLESCKRRGLVVHGDVILL 287
+ R G+V R+ P +S P + ++ ES + ++L
Sbjct: 155 FVSRNGRVNGVLAVSRAFGDFELKKGKPQPVSAEPDVTSHKITES---------DEFLIL 205
Query: 288 ATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVAN 322
A+DG++D + D + ++VR++ S A
Sbjct: 206 ASDGLWDVLSDQ-EVVDIVRSELSD--GSPMEAAE 237
>gnl|CDD|222308 pfam13672, PP2C_2, Protein phosphatase 2C. Protein phosphatase 2C
is a Mn++ or Mg++ dependent protein serine/threonine
phosphatase.
Length = 211
Score = 35.0 bits (81), Expect = 0.032
Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 12/119 (10%)
Query: 208 SSTACIVILNKETSTLYTANIGDSGFVIVRRGKVIHR-SEEQQH-YFNTPFQLSLPPLSH 265
++T + ++ + IGD V+ + SE Y N L+ P
Sbjct: 97 ATTLLLAVITPGG--IVFFQIGDGAIVVRDGDGELQLLSEPDSGEYANETTFLTSPDALE 154
Query: 266 TTQVLESCKRRGLVVHGDVILLATDGVFDNVPDSLLLAELVR---AQGSKDPMQLQLVA 321
++ RR + GD + L TDG+ D++ ++ QLV
Sbjct: 155 EFRI-----RRLTLEPGDALALMTDGLSDSLVTEEPFRPFFAPLLETLEEEGASEQLVE 208
>gnl|CDD|193604 cd09829, PET_testin, The PET domain of Testin. The PET domain of
Testin: Testin contains a PET domain at the N-terminus
and three C-terminal LIM domains. Testin is a
cytoskeleton associated focal adhesion protein that
localizes along actin stress fibers, at cell-cell
contact areas, and at focal adhesion plaques. Testin
interacts with a variety of cytoskeletal proteins,
including zyxin, mena, VASP, talin, and actin and is
involved in cell motility and adhesion events. Knockout
mice experiments reveal a tumor repressor function of
Testin. The PET domain is a protein-protein interaction
domain and is usually found in conjunction with LIM
domain, which is also involved in protein-protein
interactions. The PET containing proteins serve as
adaptors or scaffolds to support the assembly of
multimeric protein complexes.
Length = 88
Score = 31.1 bits (71), Expect = 0.17
Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 74 TSLLARSYYELL-ENKQPILGSSTA 97
T LAR Y ELL + KQPI GS A
Sbjct: 11 TQELARYYMELLPKEKQPIAGSEGA 35
Score = 30.3 bits (69), Expect = 0.33
Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 161 TSLLARSYYELL-ENKQPILGS 181
T LAR Y ELL + KQPI GS
Sbjct: 11 TQELARYYMELLPKEKQPIAGS 32
>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase;
Reviewed.
Length = 212
Score = 29.4 bits (67), Expect = 2.2
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 111 TANIGNSIVRVADGVGGWRNYG 132
+ N VR DG GW Y
Sbjct: 122 QLGLHNVSVRHGDGWKGWPAYA 143
>gnl|CDD|177121 MTH00046, CYTB, cytochrome b; Validated.
Length = 355
Score = 29.2 bits (66), Expect = 4.0
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 20 KDFSNNKMFQLNKYGDDAYFTARYKTADVLEFSSFLM 56
K S+N +F N Y D YF + + D+ F
Sbjct: 193 KSGSSNPLFSSNGYSDVVYFHSYFTVKDLFLFMVVCS 229
>gnl|CDD|107250 cd01537, PBP1_Repressors_Sugar_Binding_like, Ligand-binding domain
of the LacI-GalR family of transcription regulators and
the sugar-binding domain of ABC-type transport systems.
Ligand-binding domain of the LacI-GalR family of
transcription regulators and the sugar-binding domain of
ABC-type transport systems, all of which contain the
type I periplasmic binding protein-like fold. Their
specific ligands include lactose, ribose, fructose,
xylose, arabinose, galactose/glucose, and other sugars.
The LacI family of proteins consists of transcriptional
regulators related to the lac repressor; in general the
sugar binding domain in this family binds a sugar, which
in turn changes the DNA binding activity of the
repressor domain. The core structure of the periplasmic
binding proteins is classified into two types and they
differ in number and order of beta strands in each
domain: type I, which has six beta strands, and type II,
which has five beta strands. These two distinct
structural arrangements may have originated from a
common ancestor.
Length = 264
Score = 28.5 bits (64), Expect = 5.4
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 269 VLESCKRRGLVVHGDVILLATDGVFDNVPDSLLL 302
L + + GL V D+ ++ FD P++LL
Sbjct: 193 ALRALREAGLRVPDDISVIG----FDGTPEALLA 222
>gnl|CDD|219493 pfam07638, Sigma70_ECF, ECF sigma factor. These proteins are
probably RNA polymerase sigma factors belonging to the
extra-cytoplasmic function (ECF) subfamily and show
sequence similarity to pfam04542 and pfam04545.
Length = 185
Score = 27.8 bits (62), Expect = 6.3
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 275 RRGLVVHGDVILLATDGVFDNV----PDSLL-LAELVRAQGSKDPMQLQLVA 321
+RG GDV D V DN PD LL L E + S P Q +LV
Sbjct: 98 KRG----GDVQRRELDEVVDNGDSPNPDLLLDLDEALEQLFSLSPRQARLVE 145
>gnl|CDD|173286 PRK14825, PRK14825, putative deoxyribonucleotide triphosphate
pyrophosphatase; Provisional.
Length = 199
Score = 28.0 bits (62), Expect = 7.0
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 159 EPTSLLARSYYELLENKQPILGS-STTCIVILNKE 192
E + L A++ +E+L NKQP+ S CI LN E
Sbjct: 45 ENSLLKAKALFEILNNKQPVFSEDSGLCIEALNLE 79
Score = 28.0 bits (62), Expect = 7.6
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 72 EPTSLLARSYYELLENKQPILGS-STACIVILNKE 105
E + L A++ +E+L NKQP+ S CI LN E
Sbjct: 45 ENSLLKAKALFEILNNKQPVFSEDSGLCIEALNLE 79
>gnl|CDD|223476 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme
apparently involved in regulation of cell wall
biogenesis [Cell envelope biogenesis, outer membrane].
Length = 374
Score = 28.4 bits (64), Expect = 7.6
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 320 VANTIALMARTLAF-DETYMSPFAIQARANGISTQGGKP 357
A +AL+A + DE + F A AN + G KP
Sbjct: 60 AALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKP 98
>gnl|CDD|221366 pfam11996, DUF3491, Protein of unknown function (DUF3491). This
family of proteins is functionally uncharacterized. This
protein is found in bacteria. Proteins in this family
are typically between 286 to 3225 amino acids in length.
This protein is found associated with pfam04488. This
protein is found associated with pfam04488.
Length = 934
Score = 28.2 bits (63), Expect = 9.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 92 LGSSTACIVILNKETSTLCTANIGNSIVRVADGV 125
G + I I N +TST GN V+ ADG+
Sbjct: 212 EGYNNGGIHISNADTSTKLNHWAGNFTVKTADGI 245
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.381
Gapped
Lambda K H
0.267 0.0697 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,317,699
Number of extensions: 1725157
Number of successful extensions: 1329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1318
Number of HSP's successfully gapped: 27
Length of query: 369
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 271
Effective length of database: 6,590,910
Effective search space: 1786136610
Effective search space used: 1786136610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.0 bits)