RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4509
(369 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.5 bits (141), Expect = 2e-09
Identities = 60/385 (15%), Positives = 120/385 (31%), Gaps = 119/385 (30%)
Query: 40 TARYKTADVL--EFSSFLMKTCERLVTSGRFSCTEPTS---LLAR--SYYELLENKQPIL 92
TA + A L +F+ L + E EPT+ L+ + Y L +
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAAD-----DEPTTPAELVGKFLGYVSSLVEPSKV- 77
Query: 93 GSSTACI-VILNK-ETSTLCTANI-----------GNSIVRVADGVGGWRNYGIDPGEFS 139
G + + L + E L +I ++V+ + + +NY +
Sbjct: 78 GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI---KNY------IT 128
Query: 140 SFLMKTCERLVTSGRFSCTEPTSLLARSYYELLENKQPIL------GSSTTCIVILNKET 193
+ + + R + S L R+ + E ++ G++ +E
Sbjct: 129 A--------RIMAKRPFDKKSNSALFRA---VGEGNAQLVAIFGGQGNTDDYF----EEL 173
Query: 194 STLYT---ANIGDSIVRSSTAC--IVILNKETSTLYTANIGDSGFVIVRRGKVIHRSEEQ 248
LY +GD I S+ ++ + ++T G I+ + +
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ-----GLNIL---EWLENPSNT 225
Query: 249 --QHYFNT-PFQLSLPPLSHTTQV---LESCKR------------RGLVVHGDVILLATD 290
+ Y + P S P L Q+ + + K +G H ++ A
Sbjct: 226 PDKDYLLSIPI--SCP-LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV- 281
Query: 291 GVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALM----AR-TLAFDETYMSPFAIQ- 344
+ S + V I ++ R A+ T + P ++
Sbjct: 282 --------------AIAETDSWESF-FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 345 ARANGISTQGGKPDDITVLLAIVAL 369
+ N G P + +L+I L
Sbjct: 327 SLENNE----GVP---SPMLSISNL 344
Score = 43.9 bits (103), Expect = 8e-05
Identities = 69/394 (17%), Positives = 122/394 (30%), Gaps = 143/394 (36%)
Query: 4 PSPKEAKLFSAV-SGIPKDFSNNKMF--QLNKYGD-DAYFT---ARYKT-----ADVLEF 51
+ LF AV G + + +F Q G+ D YF Y+T D+++F
Sbjct: 138 DKKSNSALFRAVGEGNAQLVA---IFGGQ----GNTDDYFEELRDLYQTYHVLVGDLIKF 190
Query: 52 SSFLMKTCERLVTSGRFSCTEPTSLLARSY--YELLEN--KQPILGSSTACIVILNKETS 107
S+ +T L+ + + + + E LEN P +
Sbjct: 191 SA---ETLSELIRTT----LDAEKVFTQGLNILEWLENPSNTP--------------DKD 229
Query: 108 TLCTANI---GNSIVRVADGVGGWRNYGIDPGEFSSFLMKTCERLVTSGRFSCTE--PTS 162
L + I ++++A V + G PGE S+L G ++ T+
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL---------KGATGHSQGLVTA 280
Query: 163 LL---ARSYYELLENKQPILGSSTTCIVIL------NKET---STLYTANIGDSI----- 205
+ S+ + I +L E ++L + + DS+
Sbjct: 281 VAIAETDSWESFFVS-------VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 206 -------VRSSTACIVI-----LNK---ETSTLYTANI-GDSGFVI-------------V 236
+ + T V N + + + G V+ +
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 237 RRGKVIHRSEEQQHYFNTPFQLSLPPLSHTTQVLESCKRRGLVV----HGDVILL--ATD 290
R+ K S Q PF S+ R L V H LL A+D
Sbjct: 394 RKAKA--PSGLDQS--RIPFSERKLKFSN----------RFLPVASPFHSH--LLVPASD 437
Query: 291 GVFDNVPDSLLLAELVRAQGSKDPMQLQL-VANT 323
L+ +LV+ S + +Q+ V +T
Sbjct: 438 ---------LINKDLVKNNVSFNAKDIQIPVYDT 462
Score = 35.0 bits (80), Expect = 0.040
Identities = 57/263 (21%), Positives = 86/263 (32%), Gaps = 95/263 (36%)
Query: 4 PSPKEAKLFSAVSGIPKDFSNNKMFQLNKYGDDAYFTARYKTADVLEFSSFLMKTCERLV 63
PSP + S +S + ++ + + + N + +E S L+ + LV
Sbjct: 335 PSP----MLS-ISNLTQEQVQDYVNKTNSHLP---------AGKQVEIS--LVNGAKNLV 378
Query: 64 TSGRFSCTEPTSLLARSYYELLENKQPILGSSTACIVILNKETSTLCTANIGNSIVRVAD 123
SG P SL Y L N L K A G R+
Sbjct: 379 VSG-----PPQSL-----YGL--NLT------------LRKA-----KAPSGLDQSRI-- 407
Query: 124 GVGGWRNYGIDPGEFSSFLMKTCER-LVTSGRF-SCTEP--TSLLARSY----YELLENK 175
FS ER L S RF P + LL + +L++N
Sbjct: 408 -------------PFS-------ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN 447
Query: 176 QPILGSSTTCIVILNKETSTL--YTANIGDSIVRSSTACIVIL--NKETSTLYTAN-I-- 228
V + S L + +I + IV CI+ L ET+T + A I
Sbjct: 448 VSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD----CIIRLPVKWETTTQFKATHILD 503
Query: 229 ----GDSGFVIVRRGKVIHRSEE 247
G SG G + HR+++
Sbjct: 504 FGPGGASGL-----GVLTHRNKD 521
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural
genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus}
Length = 242
Score = 43.1 bits (102), Expect = 6e-05
Identities = 28/179 (15%), Positives = 52/179 (29%), Gaps = 48/179 (26%)
Query: 194 STLYTANIGDSIVRSSTACIVILNKETSTLYTANIGDSGFVIVRRGKVIHRSEEQQHYFN 253
LY G S+ I+ ++ + ++ + ++ R G+ SE
Sbjct: 84 DFLYAMRDGK---VSAALDILSVDLASRSVLVTRNSEVPMLLGRNGEFEQISESG----- 135
Query: 254 TPFQLSLPPL--SHTTQVLESCKRRGLVVHGDVILLATDGVFDNVPDSL----LLAELVR 307
+ T+ G ++L +DG+ LA R
Sbjct: 136 -------GRIGIYRHTRPRVLEFP---AEPGLTVILVSDGIIGAGGRRGQPLEFLATGGR 185
Query: 308 AQGSKDPMQLQLVANTIALMARTLAFDETYMSPFAIQARANGISTQGGKP-DDITVLLA 365
G + P Q + L+ L D G+ DD+TV++
Sbjct: 186 VAGPETPAQ-AIAD---ELLEAALVAD-------------------DGRAGDDMTVVVL 221
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 2e-04
Identities = 37/286 (12%), Positives = 71/286 (24%), Gaps = 91/286 (31%)
Query: 6 PKEAKLFS--AVSGIPKDFSNNK-MFQ-LNKYGDDAYFTARYKTADVLE-------FSSF 54
P+E + +S I + + + D T + +VLE F
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 55 LM---------KTCERLVTSGRFSCTEP-------TSLLAR-------SYYEL-LENKQP 90
+ + S SL+ + S + LE K
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 91 ILGSSTACIVILNK--ETSTLCTANIGNSIVRVADGVGGWRNYGIDPGEFSSFL---MKT 145
+ I++ T + ++ Y F S + +K
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPY---------LDQY------FYSHIGHHLKN 483
Query: 146 CERLVTSGRFSCTEPTSLLARSYYEL--LENK-------QPILGSSTTCIVILNK----- 191
E E +L + + LE K GS + L
Sbjct: 484 IEH---------PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
Query: 192 -ETSTLYTA----------NIGDSIVRSSTACIV--ILNKETSTLY 224
+ Y I ++++ S ++ L E ++
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
Score = 42.1 bits (98), Expect = 2e-04
Identities = 31/236 (13%), Positives = 77/236 (32%), Gaps = 56/236 (23%)
Query: 21 DFSNNKMFQLN--KYGDDAYFTAR-YKTA-----DVLE---FSSFLMKTCERLVTSGRFS 69
D S+N +++ + ++ Y+ +V +++F + C+ L+T+
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-CKILLTTRFKQ 276
Query: 70 CTEPTSLLARSYYELLENKQPILGSSTACIV--ILNKETSTL----CTAN------IGNS 117
T+ S ++ L + + ++ L+ L T N I S
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 118 IVRVADGVGGWRNYGIDPGEFSSFLMKTCERLVTSGRFSCTEPTSLLARSYYELL----E 173
I W++ D + ++ + + L EP R ++ L
Sbjct: 337 IRDGLATWDNWKHVNCD--KLTTIIESSLNVL---------EPAEY--RKMFDRLSVFPP 383
Query: 174 N-KQPILGSSTTCIVILNKETSTLYTANIGDSIVRSSTACIVILNK----ETSTLY 224
+ P + ++ + S + + + + S ++ K T ++
Sbjct: 384 SAHIP---TILLSLIWFDVIKSD--VMVVVNKLHKYS-----LVEKQPKESTISIP 429
Score = 41.8 bits (97), Expect = 3e-04
Identities = 36/235 (15%), Positives = 73/235 (31%), Gaps = 60/235 (25%)
Query: 161 TSLLARSYYELLENKQPILGSSTTCIVILNKETSTLYTANIGDSIVRSSTAC-------I 213
T Y ++L + + C + + S L I D I+ S A
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI-DHIIMSKDAVSGTLRLFW 69
Query: 214 VILNKETSTLYTANIGDS-----GFVIVR-RGKVIHRSEEQQHY-------FN-----TP 255
+L+K+ + + + F++ + + S + Y +N
Sbjct: 70 TLLSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 256 FQLS-LPPLSHTTQVLESCKR-RGLVVHG-----------------DVILLATDGVF--- 293
+ +S L P Q L + + +++ G V +F
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 294 ---DNVPDSLL--LAELVR------AQGSKDPMQLQLVANTIALMARTLAFDETY 337
N P+++L L +L+ S ++L ++I R L + Y
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
>3rnr_A Stage II sporulation E family protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans}
Length = 211
Score = 41.1 bits (97), Expect = 2e-04
Identities = 18/126 (14%), Positives = 45/126 (35%), Gaps = 13/126 (10%)
Query: 209 STACIVILNKETSTLYTANIGDSGFVIVRRGKVIHRSEEQ---QHYFNTPFQLSLPPLSH 265
+T + +N TL A++GD + + G++ S + P
Sbjct: 72 ATMAVAAVNLRDGTLEWASVGDCRVYLFKGGRLSRLSLDHNVSSEMVLLGRGPVPGPAGE 131
Query: 266 T-TQVL--------ESCKRRGLVVHGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQ 316
T + + + + G+ +L+ +DGV+ ++ + +A + +
Sbjct: 132 MITSFIGIENLTEISTSEAPLPLEAGEGVLVVSDGVYRSLHED-RIAMALSRGSDARGIL 190
Query: 317 LQLVAN 322
++ A
Sbjct: 191 QEVEAQ 196
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling
pathway, cell membr hydrolase, magnesium, manganese,
metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis
thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B*
Length = 316
Score = 41.3 bits (97), Expect = 3e-04
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 209 STACIVILNKETSTLYTANIGDSGFVIVRRGKVI 242
ST+ + ++ S ++ AN GDS V+ R +
Sbjct: 124 STSVVAVVFP--SHIFVANCGDSRAVLCRGKTAL 155
Score = 30.2 bits (68), Expect = 0.94
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 143 MKTCERLVTSGRFSCTEPTSLLARSYY---ELLENKQPILGSSTTCIVILNKETSTLYTA 199
+ + +++ G + L S+ +E+ P ST+ + ++ S ++ A
Sbjct: 82 IAKEKPMLSDGDTWLEKWKKALFNSFLRVDSEIESVAPETVGSTSVVAVVFP--SHIFVA 139
Query: 200 NIGDS 204
N GDS
Sbjct: 140 NCGDS 144
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2,
protein structure initiative, NEW YORK SGX research
center for structural genomics; 2.25A {Homo sapiens}
Length = 274
Score = 40.8 bits (96), Expect = 4e-04
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 209 STACIVILNKETSTLYTANIGDSGFVIVRRGKVI 242
+TA + +L L A++GDS ++ R+GK +
Sbjct: 103 TTATVALLRDGI-ELVVASVGDSRAILCRKGKPM 135
Score = 39.3 bits (92), Expect = 0.001
Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 17/93 (18%)
Query: 121 VADGVGGWRNYGIDPGEFSSFLMKTCERLVTSGRFSCTEPTSLLARSYYEL--------- 171
V DG GG + F E+ + +LL ++ E+
Sbjct: 40 VYDGHGG--------PAAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAFSSHAR 91
Query: 172 LENKQPILGSSTTCIVILNKETSTLYTANIGDS 204
L +L S TT V L ++ L A++GDS
Sbjct: 92 LSADATLLTSGTTATVALLRDGIELVVASVGDS 124
Score = 27.3 bits (61), Expect = 6.9
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 11/78 (14%)
Query: 50 EFSSFLMKTCERLVTSGRFSCTEPTSLLARSYYEL----------LENKQPILGSSTACI 99
+ F E+ + +LL ++ E+ + + +TA +
Sbjct: 48 AAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAFSSHARLSADATLLTSGTTATV 107
Query: 100 VILNKETSTLCTANIGNS 117
+L L A++G+S
Sbjct: 108 ALLRDGI-ELVVASVGDS 124
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted
catalysis, dehydrogenase phosphatase, hydrolase; 2.38A
{Homo sapiens} PDB: 3qht_A 1l2n_A
Length = 389
Score = 40.6 bits (95), Expect = 5e-04
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 209 STACIVILNKETSTLYTANIGDSGFVIVRRGKVI 242
+TA + +L L A++GDS ++ R+GK +
Sbjct: 217 TTATVALLRDGI-ELVVASVGDSRAILCRKGKPM 249
Score = 38.3 bits (89), Expect = 0.003
Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 17/93 (18%)
Query: 121 VADGVGGWRNYGIDPGEFSSFLMKTCERLVTSGRFSCTEPTSLLARSYYEL--------- 171
V DG GG + F E+ + +LL ++ E+
Sbjct: 154 VYDGHGG--------PAAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAFSSHAR 205
Query: 172 LENKQPILGSSTTCIVILNKETSTLYTANIGDS 204
L +L S TT V L ++ L A++GDS
Sbjct: 206 LSADATLLTSGTTATVALLRDGIELVVASVGDS 238
Score = 27.1 bits (60), Expect = 8.8
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 11/76 (14%)
Query: 52 SSFLMKTCERLVTSGRFSCTEPTSLLARSYYEL----------LENKQPILGSSTACIVI 101
+ F E+ + +LL ++ E+ + + +TA + +
Sbjct: 164 ADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAFSSHARLSADATLLTSGTTATVAL 223
Query: 102 LNKETSTLCTANIGNS 117
L L A++G+S
Sbjct: 224 LRDGI-ELVVASVGDS 238
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin,
hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1
d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Length = 382
Score = 40.5 bits (95), Expect = 6e-04
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 209 STACIVILNKETSTLYTANIGDSGFVIVRRGKVI 242
STA V+++ Y N GDS ++ R KV
Sbjct: 127 STAVGVLISP--QHTYFINCGDSRGLLCRNRKVH 158
Score = 29.4 bits (66), Expect = 2.2
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 182 STTCIVILNKETSTLYTANIGDS 204
ST V+++ Y N GDS
Sbjct: 127 STAVGVLISP--QHTYFINCGDS 147
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese
binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus
subtilis} PDB: 3t9q_A*
Length = 242
Score = 39.6 bits (93), Expect = 7e-04
Identities = 26/168 (15%), Positives = 60/168 (35%), Gaps = 54/168 (32%)
Query: 209 STACIVILNKETSTLYTANIGDSGFVIVRRGKVIHRSEEQQHYFNTPFQLSLP------- 261
ST + I++ + ++ +G + I R +V+ +LP
Sbjct: 93 STLDLSIIDLQDASCKFLKVGSTPSFIKRGDQVMKVQAS-----------NLPIGIINEF 141
Query: 262 PLSHTTQVLESCKRRGLVVHGDVILLATDGVFDNVPDS----LLLAELVRAQGSKDPMQL 317
+ ++ L++ GD++++ +DG+F+ L + ++ + DP ++
Sbjct: 142 DVEVVSEQLKA---------GDLLIMMSDGIFEGPKHVENHDLWMKRKMKGLKTNDPQEI 192
Query: 318 QLVANTIALMARTLAFDETYMSPFAIQARANGISTQGGKPDDITVLLA 365
A+ LM + G DD+TV++
Sbjct: 193 ---AD--LLMEEVIRT------------------RSGQIEDDMTVVVV 217
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase,
PSI-2, protein structure initiative; 1.82A {Homo
sapiens}
Length = 307
Score = 40.1 bits (94), Expect = 7e-04
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 209 STACIVILNKETSTLYTANIGDSGFVIVRRGKVIHRSE 246
STA V+++ +Y N GDS V+ R G+V ++
Sbjct: 134 STAVGVMISP--KHIYFINCGDSRAVLYRNGQVCFSTQ 169
Score = 28.5 bits (64), Expect = 3.3
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 182 STTCIVILNKETSTLYTANIGDS 204
ST V+++ +Y N GDS
Sbjct: 134 STAVGVMISP--KHIYFINCGDS 154
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI,
protei structure initiative, NEW YORK SGX research
center for STRU genomics; 1.70A {Anopheles gambiae}
Length = 304
Score = 39.7 bits (93), Expect = 0.001
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 209 STACIVILNKETSTLYTANIGDSGFVIVRRGKVIHRSE 246
TA + +L+ LY AN GDS V+ R GK + S
Sbjct: 132 CTAVVALLHG--KDLYVANAGDSRCVVCRNGKALEMSF 167
Score = 29.3 bits (66), Expect = 1.9
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 162 SLLARSYYELLENKQPILGSSTTCIVILNKETSTLYTANIGDS 204
L S + +P S T +V L LY AN GDS
Sbjct: 111 ELKVLSGDSAGSDAEPGKDSGCTAVVALLHGK-DLYVANAGDS 152
Score = 28.9 bits (65), Expect = 2.7
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 20/85 (23%)
Query: 285 ILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTLAFDETYMSPFAIQ 344
++LA DG+++ + + + V+ + +K M+L + L
Sbjct: 239 MVLACDGIWNFMTSE-QVVQFVQERINKPGMKLSKICE--ELFDH--------------- 280
Query: 345 ARANGISTQGGKPDDITVLLAIVAL 369
A G D++T + IV
Sbjct: 281 CLAPHTRGDGTGCDNMTAI--IVQF 303
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein
interaction,; HET: PEG; 1.75A {Moorella thermoacetica}
Length = 193
Score = 38.8 bits (91), Expect = 0.001
Identities = 22/167 (13%), Positives = 43/167 (25%), Gaps = 62/167 (37%)
Query: 207 RSSTACIVILNKETSTLYTANIGDSGFVIVRRGKVIHRSE--------EQQHYFNTPFQL 258
R + A + +++ A +G+ I+ +I +
Sbjct: 80 RGAVAALCRVDRRQGLWQAAIVGNIHVKILSAKGIITPLATPGILGYNYPHQL--LIAKG 137
Query: 259 SLPPLSHTTQVLESCKRRGLVVHGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQ 318
S GD+ L+ +DG+ + LLA
Sbjct: 138 SYQE-------------------GDLFLIHSDGIQEGAVPLALLA--------------- 163
Query: 319 LVANTIALMARTLAFDETYMSPFAIQARANGISTQGGKPDDITVLLA 365
T + R + G + DD+ V++A
Sbjct: 164 NYRLTAEELVRLI------------------GEKYGRRDDDVAVIVA 192
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain,
PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C
protein phosphatase; HET: A8S; 1.80A {Arabidopsis
thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B*
Length = 337
Score = 39.5 bits (92), Expect = 0.001
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 209 STACIVILNKETSTLYTANIGDSGFVIVRRGKVI 242
STA + ++ S + +N GDS V+ R + +
Sbjct: 153 STAVVALVCS--SHIVVSNCGDSRAVLFRGKEAM 184
Score = 29.1 bits (65), Expect = 2.6
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 181 SSTTCIVILNKETSTLYTANIGDS 204
+T +V L S + +N GDS
Sbjct: 151 VGSTAVVALVCS-SHIVVSNCGDS 173
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate
dehydrogenase phosphatase 1, catalytic subunit, PDP1C,
hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A
Length = 467
Score = 37.1 bits (85), Expect = 0.008
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 209 STACIVILNKETSTLYTANIGDSGFVIVRRGK 240
+TAC+ ++ L+ AN GDS ++ + +
Sbjct: 201 ATACVAHVDGVD--LHVANTGDSRAMLGVQEE 230
Score = 31.3 bits (70), Expect = 0.55
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 181 SSTTCIVILNKETSTLYTANIGDS 204
S T V + L+ AN GDS
Sbjct: 199 SGATACVAH-VDGVDLHVANTGDS 221
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family
phosphatase, hydrolase; 1.28A {Synechococcus elongatus}
PDB: 2j86_A 2y09_A 2xzv_A
Length = 240
Score = 36.0 bits (84), Expect = 0.012
Identities = 51/269 (18%), Positives = 93/269 (34%), Gaps = 82/269 (30%)
Query: 121 VADGVGGWRNYGIDPGEF-SSFLMKT-CERLVTSGRFSCTEPTSLLARSY-------YEL 171
VADG+GG GE S + + L T +P +LL +++ E
Sbjct: 32 VADGMGGHAG-----GEEASRLAVDHIRQYLETHLEDLQHDPVTLLRQAFLAANHAIVEQ 86
Query: 172 LENKQPILGSSTTCI-VILNKETSTLYTANIGDS---IVRSSTACIVILNKETSTLYTAN 227
TT + ++L+++ + A++GDS R L + TS
Sbjct: 87 QRQNSARADMGTTAVVILLDEKGDRAWCAHVGDSRIYRWRKDQ-----LQQITS------ 135
Query: 228 IGDSGFV--IVRRGKVIHRSEEQQHYFNTPFQLSLPPLSHT-TQVL---ESCK---RRGL 278
D ++ V+ G + + +QH P H +Q L + + +
Sbjct: 136 --DHTWIAQAVQLGS-LTIEQARQH-----------PWRHVLSQCLGREDLSQIDIQPID 181
Query: 279 VVHGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTLAFDETYM 338
+ GD +LL +DG+ + + D + + + A L
Sbjct: 182 LEPGDRLLLCSDGLTEELTD----DVISIYLSEPNVQKA----------AAAL------- 220
Query: 339 SPFAIQARANGISTQGGKPDDITVLLAIV 367
+ A A G D++TV++ V
Sbjct: 221 ----VDA-AK----THGGRDNVTVVVISV 240
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese,
phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A
2jft_A 2v06_A
Length = 234
Score = 35.6 bits (83), Expect = 0.015
Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 18/100 (18%)
Query: 112 ANIGNSIVRVADGVGGWRNYGIDPGEFSSFLMKTCERLVTSGRFSCTEPTSLLARSY--- 168
+ VADG G G +S + L F+ L +
Sbjct: 25 CLADGILYAVADGFGA-------RGHHASAT--ALKTLSA--GFAAAPDRDGLLEAVQQA 73
Query: 169 ----YELLENKQPILGSSTTCIVILNKETSTLYTANIGDS 204
+ELL ++ + G++ T + + NIGDS
Sbjct: 74 NLRVFELLGDEPTVSGTTLTAVAVFEPGQGGPLVVNIGDS 113
Score = 34.8 bits (81), Expect = 0.028
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 30/90 (33%)
Query: 279 VVHGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTLAFDETYM 338
GD +L+++DG+F + A +V A S DP R L
Sbjct: 175 CGPGDRLLISSDGLFAAADE----ALIVDAATSPDPQVA----------VRRL------- 213
Query: 339 SPFAIQARANGISTQGGKPDDITVLLAIVA 368
++ AN G D+ TV++ +
Sbjct: 214 ----VEV-AN----DAGGSDNTTVVVIDLG 234
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting
protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles
gambiae}
Length = 358
Score = 36.1 bits (83), Expect = 0.015
Identities = 8/32 (25%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 209 STACIVILNKETSTLYTANIGDSGFVIVRRGK 240
S+A + ++++ S LY NIG+ ++ + +
Sbjct: 155 SSAVLALIHR--SHLYLGNIGNCRALLCKTDE 184
Score = 33.4 bits (76), Expect = 0.095
Identities = 29/246 (11%), Positives = 74/246 (30%), Gaps = 39/246 (15%)
Query: 146 CERLVTSGRFSCTEPTSLLARSYYELLENKQPILGSSTTCIVILNKETSTLYTANIGDS- 204
+ +++ + E + +L + S+ + ++++ S LY NIG+
Sbjct: 119 IQLHLSADGMNQYEISQQFENVLQKLDSLNNALSVGSSAVLALIHR--SHLYLGNIGNCR 176
Query: 205 -IVRSSTACIVILNKETSTLYTANIGD--------SGFVIVRRG------KVIHRSEEQQ 249
++ + + + S + + G + I +
Sbjct: 177 ALLCKTDEHDTLTVTQLSVDHNLLNAEEAARLFRLGLMAQNFEGVPLYSTRCIGNYLGKA 236
Query: 250 HYFNTPFQLS--LPPLSHTTQVLESCKRRGLVVHGDVILLATDGVFDNVPDSLL------ 301
Y + F S P+ +++ + ++L + G+ + +
Sbjct: 237 GYKDCNFLSSATAEPVIFEPEIVGGIQITP---ACRFLVLMSSGLCRALHEIFPGDASTG 293
Query: 302 ---LAELVRAQGSKDPMQLQLVANTIALMARTLAFDETYMSPFAIQARANGISTQGGKPD 358
L ++ + L VA ++ D +Q S D
Sbjct: 294 NRELVRMISEEFQNQ-STLGGVAQSVVHRIVQAHHDT------YMQLVEEHRSVTFNSRD 346
Query: 359 DITVLL 364
D+T+L+
Sbjct: 347 DVTLLI 352
>3ii1_A Cellulase; CELM2, glucanase-xyanase, glucanase, xylanase,
bifunctional enzyme, hydrolase; HET: BGC; 2.25A
{Uncultured bacterium} PDB: 3fw6_A
Length = 535
Score = 35.7 bits (81), Expect = 0.026
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 213 IVILNKETSTLYTANIGDSGFVIVRRGKVIHRSEEQQ-------HYFNTPFQLSLPPLSH 265
++++NK S A I S F + +V + + L+LP S
Sbjct: 467 VMVINKYLSGNTPATINLSNFTAQAQAQVWQLTAANTINHLSNVSLSGSSLSLTLPAQSV 526
Query: 266 TTQVLES 272
T V+ +
Sbjct: 527 TLLVIPA 533
>2yih_A CEL44C, xyloglucanase; hydrolase, GH44, endo-glucanase,
carbohydrate-binding protei; HET: BGC; 1.70A
{Paenibacillus polymyxa} PDB: 2yjq_A* 2ykk_A* 3zq9_A*
Length = 524
Score = 35.0 bits (79), Expect = 0.038
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Query: 190 NKETSTLYTANIGDSIVRSSTACIVILNKETSTLYTANIGDSGFVIVRRGKV-------- 241
+ S+++ + S +V++NK + + A SG GKV
Sbjct: 429 DIVNSSVHASVTNAS---DKELHLVVMNKSMDSAFDAQFDLSGAKTYISGKVWGFDKNSS 485
Query: 242 -IHRSEEQQHYFNTPFQLSLPPLSHTTQVLES 272
I + F ++PPL+ VL +
Sbjct: 486 QIKEAAPITQISGNRFTYTVPPLTAYHIVLTT 517
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics,
protein structure initiative; 2.04A {Toxoplasma gondii}
Length = 324
Score = 34.3 bits (79), Expect = 0.048
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 209 STACIVILNKETSTLYTANIGDSGFVIVRRGK 240
ST+ +L K + ++GDS +
Sbjct: 138 STSVTAVLAKGF--VAVGHLGDSRIAMGVETP 167
Score = 30.0 bits (68), Expect = 1.2
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 170 ELLEN--KQPILGSSTTCIVILNKETSTLYTANIGDS 204
EL++ + +S+T + + + ++GDS
Sbjct: 123 ELVKMCEQLNKDYASSTSVTAV-LAKGFVAVGHLGDS 158
>2e4t_A Endoglucanase, xyloglucanase; TIM barrel, TIM-like barrel,
composite domain of glycosyl HY families 5, 30, 39 and
51, hydrolase; 0.96A {Clostridium thermocellum} PDB:
2e0p_A 2eo7_A* 2ej1_A* 2eex_A* 2eqd_A*
Length = 519
Score = 34.5 bits (78), Expect = 0.050
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 12/94 (12%)
Query: 190 NKETSTLYTANIGDSIVRSSTACIVILNKETSTLYTANIGDSGFVIVRRGKV-------- 241
+ E S+ Y + +G+ S I++LNK T N G V
Sbjct: 428 DIEVSSAYASIVGED---DSKLHIILLNKNYDQPTTFNFSIDSSKNYTIGNVWAFDRGSS 484
Query: 242 -IHRSEEQQHYFNTPFQLSLPPLSHTTQVLESCK 274
I + + + F ++P L+ VLE+ +
Sbjct: 485 NITQRTPIVNIKDNTFTYTVPALTACHIVLEAAE 518
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting
protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding
protein, protein binding; 2.25A {Homo sapiens} PDB:
2pom_A 2pop_A
Length = 401
Score = 34.6 bits (79), Expect = 0.051
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 207 RSSTACIVILNKETSTLYTANIGDSGFVIVRRGK 240
+ A + +L + LY AN+G + ++ +
Sbjct: 164 GGAMAVVAVLLN--NKLYVANVGTNRALLCKSTV 195
Score = 30.4 bits (68), Expect = 0.90
Identities = 30/236 (12%), Positives = 73/236 (30%), Gaps = 41/236 (17%)
Query: 157 CTEPTSLLARSYYELLENKQPILGSSTTCIVILNKETSTLYTANIGDS---IVRSSTACI 213
+ E L+ + + +V + + LY AN+G + + +S+ +
Sbjct: 140 PQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLN-NKLYVANVGTNRALLCKSTVDGL 198
Query: 214 VILN----------KETSTLYTANIGDSGFVIVRR--GKVIHRSEEQQHY------FNTP 255
+ E L + V G+ R +
Sbjct: 199 QVTQLNVDHTTENEDELFRLSQLGLDAGKIKQVGIICGQESTRRIGDYKVKYGYTDIDLL 258
Query: 256 FQLSLPPLSHTTQVLESCKRRGLVVHGDVILLATDGVFDNVPDSLL-------LAELVRA 308
P+ ++ + G ++L ++G++ + + +A ++
Sbjct: 259 SAAKSKPIIAEPEIHGAQPLDG---VTGFLVLMSEGLYKALEAAHGPGQANQEIAAMIDT 315
Query: 309 QGSKDPMQLQLVANTIALMARTLAFDETYMSPFAIQARANGISTQGGKPDDITVLL 364
+ +K Q L A A++ R + +AR + +D+T+L+
Sbjct: 316 EFAK---QTSLDAVAQAVVDRVKRIHSDTFASGGERAR------FCPRHEDMTLLV 362
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases,
PSTP/PPP, structural genomics, PSI, protein structure
initiative; 1.95A {Mycobacterium tuberculosis} SCOP:
d.219.1.1 PDB: 2cm1_A
Length = 237
Score = 33.7 bits (78), Expect = 0.066
Identities = 58/274 (21%), Positives = 94/274 (34%), Gaps = 82/274 (29%)
Query: 111 TANIGNSIVRVADGVGGWRNYGIDPGEF-SSFLMKTCERLVTSGRFSCTEPTSLLARSY- 168
+ G ++ +ADG+GG GE S ++ L + + L +
Sbjct: 23 SVYAGARLLALADGMGGHAA-----GEVASQLVIAALAHLDDDE--PGGDLLAKLDAAVR 75
Query: 169 ------YELLENKQPILGSSTTCIVILNKETSTLYTANIGDS---IVRSSTACIVILNKE 219
+E + + G TT IL + L +IGDS ++R L +
Sbjct: 76 AGNSAIAAQVEMEPDLEGMGTTLTAILFAG-NRLGLVHIGDSRGYLLRDGE-----LTQI 129
Query: 220 TSTLYTANIGDSGFV--IVRRGKVIHRSEEQQHYFNTPFQ------LSLPPLSHTTQVLE 271
T D FV +V G+ I E H P + L+ + T + E
Sbjct: 130 TK--------DDTFVQTLVDEGR-ITPEEAHSH----PQRSLIMRALTGHEVEPTLTMRE 176
Query: 272 SCKRRGLVVHGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTL 331
GD LL +DG+ D V D ++ A + + A L
Sbjct: 177 -------ARAGDRYLLCSDGLSDPVSD----ETILEALQIPEVAES----------AHRL 215
Query: 332 AFDETYMSPFAIQARANGISTQGGKPDDITVLLA 365
I+ A +GG PD++TV++A
Sbjct: 216 -----------IEL-AL----RGGGPDNVTVVVA 233
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein
structure initiative, NEW YORK structural research
consortium, nysgxrc; 2.71A {Toxoplasma gondii}
Length = 377
Score = 33.8 bits (77), Expect = 0.070
Identities = 20/143 (13%), Positives = 38/143 (26%), Gaps = 38/143 (26%)
Query: 222 TLYTANIGDSGFVIVRRGKVI-----H---RSEEQQ---------HYFNTPF----QLSL 260
T++ A++G+S V+ I H +E+ N + +
Sbjct: 167 TIHVASLGNSRCVLKSGRTAIHLSTPHTASSHKERHRVQAAGGVFTTVNGELLLGGVVPM 226
Query: 261 ------------PPLSHTTQVLESCK---RRGLVVHGDVILLATDGVFDNVPDSLLLAEL 305
++ S GD I+ T G F + +
Sbjct: 227 TRAFGSFDFKKGGQGKLQQDLV-SAVPDVTTFFAYPGDDIVAGTAGAFAHFRSHAAI-AA 284
Query: 306 VRAQGSKDPMQLQLVANTIALMA 328
A P + A + + A
Sbjct: 285 AIALYPVSPETVLDAAKAMVVNA 307
>3ik2_A Endoglucanase A; TIM-like barrel, hydrolase; 2.20A {Clostridium
acetobutylicum}
Length = 517
Score = 34.1 bits (77), Expect = 0.076
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 9/67 (13%)
Query: 213 IVILNKETSTLYTANIGDSGFVIVRRGKV---------IHRSEEQQHYFNTPFQLSLPPL 263
I+++NK + N S G+V I + ++ F +P L
Sbjct: 443 IIVMNKNYTDSINFNFNVSSNKNYTSGQVWGFDSNSSNITKRDDVSSISGNKFTYKIPAL 502
Query: 264 SHTTQVL 270
+ VL
Sbjct: 503 TAVHIVL 509
>3eq2_A Probable two-component response regulator; adaptor sigmas,
signaling protein; 3.40A {Pseudomonas aeruginosa} PDB:
3f7a_A
Length = 394
Score = 32.9 bits (75), Expect = 0.17
Identities = 26/170 (15%), Positives = 47/170 (27%), Gaps = 64/170 (37%)
Query: 210 TACIVILNKETSTLYTANIGDSGFVIVRRGKVIHRSE---------EQQHYFNTPFQLSL 260
T +++ E ++L + G ++ E + Y + L
Sbjct: 268 TMLGGVIDLEKNSLTYSIGGHLPLPVLFVEGQAGYLEGRGLPVGLFDDATY--DDRVMEL 325
Query: 261 PPLSHTTQVLESCKRRGLVVHGDVILLATDGVFDNVPDSLL------LAELVRAQGSKDP 314
PP + L +DG+ D +P + L L E V A G
Sbjct: 326 PP-------------------SFSLSLFSDGILDVLPGATLKEKEASLPEQVAAAGG--- 363
Query: 315 MQLQLVANTIALMARTLAFDETYMSPFAIQARANGISTQGGKPDDITVLL 364
T+ + + + PDDI +L+
Sbjct: 364 --------TLDGLRQVFGL-----------------ANLAEMPDDIALLV 388
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling
protein; 2.65A {Streptococcus agalactiae}
Length = 250
Score = 32.2 bits (74), Expect = 0.18
Identities = 51/267 (19%), Positives = 83/267 (31%), Gaps = 84/267 (31%)
Query: 121 VADGVGGWRNYGIDPGEF-SSFLMKTCERLVTSGRFSCTEPTSLLARSYYELLENKQPIL 179
+ADG+GG R G S + FS E EN++ I
Sbjct: 39 LADGMGGHRA-----GNIASEMTVTDLGSDWAETDFSELSEIRDWMLVSIET-ENRK-IY 91
Query: 180 GSS---------TTCIVILNKETSTLYTANIGDS---IVRSSTACIVILNKETSTLYTAN 227
TT + + A++GDS IVR + TS
Sbjct: 92 ELGQSDDYKGMGTTIEAVAIVG-DNIIFAHVGDSRIGIVRQGE-----YHLLTS------ 139
Query: 228 IGDSGFV--IVRRGKVIHRSEEQQHYFNTPFQLSLPPLSHT-TQVL---ESCK---RRGL 278
D V +V+ G+ + E H P + TQ + + L
Sbjct: 140 --DHSLVNELVKAGQ-LTEEEAASH-----------PQKNIITQSIGQANPVEPDLGVHL 185
Query: 279 VVHGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTLAFDETYM 338
+ GD +++ +DG+ + + ++ + L + T+ + L
Sbjct: 186 LEEGDYLVVNSDGLTNMLSNADIATVLTQ-------------EKTLDDKNQDL------- 225
Query: 339 SPFAIQARANGISTQGGKPDDITVLLA 365
I AN G D+ITV L
Sbjct: 226 ----ITL-AN----HRGGLDNITVALV 243
>2hy5_C DSRH; DSRE, DSRF, sulfur, structural genomics, PSI, protein
initiative, berkeley structural genomics center, BSGC,
TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.2
PDB: 2hyb_C
Length = 102
Score = 28.5 bits (64), Expect = 1.1
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 258 LSLPPLSHTTQVLESCKRRGLVVHGDVILLATDGVFDNVPDSLLLAELVRAQGS 311
++ P + LESC + G +LL DG++ + + + +++ A G
Sbjct: 7 VNKSPFERNS--LESCLK--FATEGASVLLFEDGIYAALAGTRVESQVTEALGK 56
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, tructural genomics;
1.80A {Alicyclobacillus acidocaldarius subsp}
Length = 242
Score = 29.7 bits (66), Expect = 1.3
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 9/85 (10%)
Query: 284 VILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTLAFDETYMSPFAI 343
IL+ TDG + PD + A G +V N I ++ R E
Sbjct: 12 QILVITDGCSNIGPDPVEAARRAHRHG--------IVVNVIGIVGRG-DAGEQGYQEAHS 62
Query: 344 QARANGISTQGGKPDDITVLLAIVA 368
A A G + +P DI+ ++
Sbjct: 63 IADAGGGMCRIVQPADISATAQMMT 87
>2d1p_C TUSB, hypothetical protein YHEL; tRNA modification, sulfur
transfer, structural genomics, translation; 2.15A
{Escherichia coli} SCOP: c.114.1.2
Length = 95
Score = 27.4 bits (61), Expect = 2.6
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 264 SHTTQVLESCKRRGLVVHGDVILLATDGVFDNVPDSLLLAELVRAQGS 311
S + R L+ GD +LL DGV V + L L A
Sbjct: 8 SPWLTDFAALLR--LLSEGDELLLLQDGVTAAVDGNRYLESLRNAPIK 53
>3f79_A Probable two-component response regulator; adaptor, signaling
protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A
Length = 255
Score = 28.4 bits (64), Expect = 3.2
Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 34/90 (37%)
Query: 282 GDVILLATDGVFDNVPDSLL------LAELVRAQGSKDPMQLQLVANTIALMARTLAFDE 335
+ L +DG+ D +P + L L E V A G T+ + +
Sbjct: 189 SFSLSLFSDGILDVLPGATLKEKEASLPEQVAAAG-----------GTLDGLRQVFGL-- 235
Query: 336 TYMSPFAIQARANGISTQGGKPDDITVLLA 365
+ PDDI +L+
Sbjct: 236 ---------------ANLAEMPDDIALLVL 250
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport;
2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Length = 140
Score = 27.5 bits (61), Expect = 4.7
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 290 DGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTLAFDE 335
+ +F++ S +LA L++ S P L+ AN L+ + D+
Sbjct: 1 NVIFEDEEKSKMLARLLK---SSHPEDLRA-ANK--LIKEMVQEDQ 40
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium,
sulfate structural genomics, PSI-2, protein structure
initiative; 1.90A {Toxoplasma gondii}
Length = 364
Score = 27.3 bits (60), Expect = 7.9
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Query: 189 LNKETSTLYTANIGDSIVRSSTACIVILNKETSTLYTANIGDSGFVIVRR-GKVI 242
+ +E + +G I + NIGDS ++ G +
Sbjct: 142 IQEEEEAEHPELVGRYPRVPDVQQKTIPAGSF-LVTAINIGDSRATLIHSDGGLT 195
>3pj0_A LMO0305 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Length = 359
Score = 27.3 bits (61), Expect = 8.7
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 259 SLPPLSHTTQVLESCKRRGLVVHGD 283
LP ++ E C +G+ +H D
Sbjct: 153 QLPAFEELEKISEYCHEQGISLHLD 177
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase;
structural genomics, joint center for structural
genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium
sibiricum}
Length = 357
Score = 27.3 bits (61), Expect = 9.6
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 259 SLPPLSHTTQVLESCKRRGLVVHGD 283
P S + C+ RG+ +H D
Sbjct: 151 VAPAFSELETISRYCRERGIRLHLD 175
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.381
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,420,921
Number of extensions: 311891
Number of successful extensions: 631
Number of sequences better than 10.0: 1
Number of HSP's gapped: 612
Number of HSP's successfully gapped: 62
Length of query: 369
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 274
Effective length of database: 4,049,298
Effective search space: 1109507652
Effective search space used: 1109507652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.4 bits)