RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4509
         (369 letters)



>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase
           pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 235

 Score = 47.2 bits (111), Expect = 8e-07
 Identities = 42/265 (15%), Positives = 85/265 (32%), Gaps = 70/265 (26%)

Query: 114 IGNSIVRVADGVGGWRNYGIDPGEFSSFLMKTCERLVTSGRFSCTEPTSLLARSYYELLE 173
            G  ++ +ADG+GG        GE +S                       L  +    L+
Sbjct: 24  AGARLLALADGMGGHAA-----GEVASQ----------------------LVIAALAHLD 56

Query: 174 NKQPILGSSTTCIVILNKETSTLYTANIGDSIVRSSTACIVILNKETSTLYTANIGDSGF 233
           + +P           +    S +      +  +      +  +    + L   +IGDS  
Sbjct: 57  DDEPGGDLLAKLDAAVRAGNSAIAAQVEMEPDLEGMGTTLTAILFAGNRLGLVHIGDSRG 116

Query: 234 VIVRRGKVIHRSEEQQHYFNTPFQLSL--------PPLSHTTQVLESCKRRGLVVH---- 281
            ++R G++   +++         +  +        P  S   + L   +    +      
Sbjct: 117 YLLRDGELTQITKDDTFVQTLVDEGRITPEEAHSHPQRSLIMRALTGHEVEPTLTMREAR 176

Query: 282 -GDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTLAFDETYMSP 340
            GD  LL +DG+ D V D      ++ A    +  +    A+ +  +A            
Sbjct: 177 AGDRYLLCSDGLSDPVSDE----TILEALQIPEVAE---SAHRLIELAL----------- 218

Query: 341 FAIQARANGISTQGGKPDDITVLLA 365
                       +GG PD++TV++A
Sbjct: 219 ------------RGGGPDNVTVVVA 231


>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase
           2C, catalytic domain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 295

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 42/280 (15%), Positives = 82/280 (29%), Gaps = 42/280 (15%)

Query: 97  ACIVILNKETSTLCTANIGNSIVRVADGVGGWRNYGIDPGEFSSFLMKTCERLVTSGRFS 156
           A   ++   +     +        V DG  G +            +    +   ++G  S
Sbjct: 38  AHTAVIGLPSGLESWSFFA-----VYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPS 92

Query: 157 CTEPTSLLARSYYELLEN------KQPILGSSTTCIVILNKETSTLYTANIGDSIV---- 206
                + +   + E+ E+      K+     S +  V +       Y  N GDS      
Sbjct: 93  VENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCR 152

Query: 207 RSSTACIVILNKETSTLYTANIGDSG--FVIVRRGKVIHRSEEQQHYFNTPFQLSLPPLS 264
                     +K ++ L    I ++G   +I R    +  S     +         P   
Sbjct: 153 NRKVHFFTQDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQ 212

Query: 265 HTTQVLESCKRRGLVVHGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTI 324
             +   E             I+LA DG++D + +   L + VR++       L+ V N +
Sbjct: 213 LVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNE-ELCDFVRSRLEVTD-DLEKVCNEV 270

Query: 325 ALMARTLAFDETYMSPFAIQARANGISTQGGKPDDITVLL 364
                                         G  D+++V+L
Sbjct: 271 VDTCL-----------------------YKGSRDNMSVIL 287


>d2hy5c1 c.114.1.2 (C:402-502) DsrH {Chromatium vinosum [TaxId:
           1049]}
          Length = 101

 Score = 26.3 bits (58), Expect = 2.8
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 265 HTTQVLESCKRRGLVVHGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTI 324
                LESC +      G  +LL  DG++  +  + + +++  A G     +L+L     
Sbjct: 11  FERNSLESCLK--FATEGASVLLFEDGIYAALAGTRVESQVTEALG-----KLKLYVLGP 63

Query: 325 ALMARTLA 332
            L AR  +
Sbjct: 64  DLKARGFS 71


>d2d1pc1 c.114.1.2 (C:1-95) tRNA 2-thiouridine synthesizing protein
           B, TusB {Escherichia coli [TaxId: 562]}
          Length = 95

 Score = 25.5 bits (56), Expect = 4.2
 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 270 LESCKRRGLVVHGDVILLATDGVFDNVPDSLLLAELVRAQGS 311
             +  R  L+  GD +LL  DGV   V  +  L  L  A   
Sbjct: 14  FAALLR--LLSEGDELLLLQDGVTAAVDGNRYLESLRNAPIK 53


>d1nxza2 c.116.1.5 (A:74-247) Hypothetical protein HI0303
           {Haemophilus influenzae [TaxId: 727]}
          Length = 174

 Score = 25.5 bits (55), Expect = 8.3
 Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 5/33 (15%)

Query: 200 NIGDSIVRSSTACIVILNKETSTLYTANIGDSG 232
            +G  ++R+ TA +  +     +      GD G
Sbjct: 144 LLGKRVLRTETASLAAI-----SALQICFGDLG 171


>d1v6za2 c.116.1.5 (A:67-228) Hypothetical protein TTHA0657 (TT1575)
           {Thermus thermophilus [TaxId: 274]}
          Length = 162

 Score = 25.5 bits (55), Expect = 8.3
 Identities = 6/17 (35%), Positives = 12/17 (70%)

Query: 200 NIGDSIVRSSTACIVIL 216
           ++G  I+R+ TA + +L
Sbjct: 137 SLGRRILRAETAALALL 153


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0644    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,292,157
Number of extensions: 57033
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 7
Length of query: 369
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 282
Effective length of database: 1,213,086
Effective search space: 342090252
Effective search space used: 342090252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)