BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy451
(296 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|239790528|dbj|BAH71819.1| ACYPI003905 [Acyrthosiphon pisum]
Length = 375
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 151/276 (54%), Positives = 196/276 (71%), Gaps = 10/276 (3%)
Query: 21 KSNIFETP----FLFGCSEVINIRQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAF 76
K +F+ P FG V+ R +R PR+KYPLW+LQ+ERA+ + LT +N+AF
Sbjct: 6 KRTVFDLPSSFRITFGGPMVLQSRTAHN-VRAPRIKYPLWYLQRERAKDDQQLTGDNRAF 64
Query: 77 IEEVVHDQCGAPAVKSGIETYN--TPLKIEPLQPLEITTSSK--RTGLIGKIIGQYPLWM 132
++E VHD+ G PAV GI TY+ +PL + ++ L + + K RTGLI + +G YP+W+
Sbjct: 65 VKEAVHDKFGMPAVIHGISTYDVRSPLSEDSVECLNVEWNPKLQRTGLIARKLGNYPMWL 124
Query: 133 KNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYR-GEPKRKLGCLLVGAESGDPSLYTK 191
NG+ +TL+QV+DNH+IKYIPP EF P RKPY K+ LGCLLVGAES DP +TK
Sbjct: 125 DNGKSVLSTLLQVIDNHVIKYIPPGEFNPPRKPYSCPNHKKPLGCLLVGAESADPQYFTK 184
Query: 192 EYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVM 251
+YCGLF G+ PKK L RF+++P+A L PGTPL A+HFRP +F+DVRG T+DRGFQGVM
Sbjct: 185 QYCGLFYREGMMPKKYLGRFMVSPEAALQPGTPLLASHFRPGDFIDVRGKTIDRGFQGVM 244
Query: 252 KRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
KR GF GMPATHGVTKSHRRGG + G K R++PG
Sbjct: 245 KRHGFHGMPATHGVTKSHRRGGNVGHGGEKGRIFPG 280
>gi|157134546|ref|XP_001656360.1| Mitochondrial 39S ribosomal protein L3 [Aedes aegypti]
gi|108870456|gb|EAT34681.1| AAEL013116-PA [Aedes aegypti]
Length = 372
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 142/267 (53%), Positives = 194/267 (72%), Gaps = 9/267 (3%)
Query: 26 ETPFLFGCSEVINIRQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQC 85
+T FL G ++ N K ++ PR++ P+WF++KER + E LT N +F++EV+HD+
Sbjct: 14 QTTFLTGLNQTRN----KNYLNRPRLRNPIWFVRKERTVHDEMLTPENTSFVKEVLHDKF 69
Query: 86 GAPAVKSGIETYNTP----LKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTT 141
G PA+ G+ T++ ++ E L ++ KRTG+I + IGQYPLWMK+G K RTT
Sbjct: 70 GPPALIKGVLTFDQSNQSLIRTEELPAVQWRPGLKRTGVIARKIGQYPLWMKDGTKIRTT 129
Query: 142 LVQVVDNHIIKYIPPEEFKPNRKPYRGEP-KRKLGCLLVGAESGDPSLYTKEYCGLFKNS 200
L+QV+DNH++KYIPP EF P +P + + K GCLLVGA+S DPS++TKEYCGLFK+S
Sbjct: 130 LLQVIDNHVVKYIPPAEFNPPLEPRQKKNWKNPYGCLLVGAQSQDPSIFTKEYCGLFKDS 189
Query: 201 GVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMP 260
GV PK+ LCRFI++P+A L PGTPL HF+ +++DVRG TVD GFQGV+KR GFKGMP
Sbjct: 190 GVLPKQHLCRFIVSPEAQLLPGTPLNVTHFKVGDYVDVRGKTVDHGFQGVVKRHGFKGMP 249
Query: 261 ATHGVTKSHRRGGCIASGAGKARVYPG 287
A+HGVTK+HR+ G I +G KARV+PG
Sbjct: 250 ASHGVTKTHRKPGNIGAGGEKARVWPG 276
>gi|195425857|ref|XP_002061179.1| GK10341 [Drosophila willistoni]
gi|194157264|gb|EDW72165.1| GK10341 [Drosophila willistoni]
Length = 375
Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 140/260 (53%), Positives = 185/260 (71%), Gaps = 7/260 (2%)
Query: 33 CSEVINIRQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKS 92
C V +R+K RP R++ P WFL+KER++ + +T N+ F++EVVH+ G+PA+
Sbjct: 23 CVLVTQVREKGHLSRP-RLRNPHWFLRKERSQTDDYVTAENRNFVKEVVHETYGSPALIK 81
Query: 93 GIETYNTPLKIEPLQPLEI-----TTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVD 147
G++TY L P++ + T +R G+I + IGQYPLW+KNGE+ RTTL+Q+VD
Sbjct: 82 GVQTYEQKLIRTPIEKPSVDAEPWTPKVRRCGVIARKIGQYPLWLKNGERVRTTLLQIVD 141
Query: 148 NHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKK 207
NH+IKY PPEE++P+ +P K GCLLVGAES +P+L TKEYCG+F++SGV PKK
Sbjct: 142 NHVIKYTPPEEYQPSHRP-SVHNLHKYGCLLVGAESTNPALLTKEYCGIFRDSGVMPKKN 200
Query: 208 LCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTK 267
+ RFI++P A L PGTPL HFR EF+DVRG TVD GFQGV+KR GFKGMPA+HGVTK
Sbjct: 201 VARFIVSPQAALAPGTPLNVGHFRVGEFVDVRGKTVDHGFQGVVKRHGFKGMPASHGVTK 260
Query: 268 SHRRGGCIASGAGKARVYPG 287
+HRR G I G K RV+PG
Sbjct: 261 THRRAGNIGGGGEKGRVWPG 280
>gi|158296418|ref|XP_316827.4| AGAP000857-PA [Anopheles gambiae str. PEST]
gi|157015287|gb|EAA12062.4| AGAP000857-PA [Anopheles gambiae str. PEST]
Length = 373
Score = 274 bits (701), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 137/254 (53%), Positives = 178/254 (70%), Gaps = 2/254 (0%)
Query: 35 EVINIRQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGI 94
+I +R K ++ PR++ P+WF++K R + E T +N AF+ EV + + A +S
Sbjct: 19 SIIPVRSKN-YLNRPRLRNPVWFVKKTRTLHNEQFTEDNTAFLNEVKRETILSAAQRSQS 77
Query: 95 ETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYI 154
+ Q + KRTG+I K IGQYPLW K+G+K RTTL+Q+VDN ++KYI
Sbjct: 78 NLLKLAHGEQNGQLAQWAPGLKRTGVIAKKIGQYPLWTKDGQKIRTTLLQIVDNEVVKYI 137
Query: 155 PPEEFKPNRKPYRGEPKRK-LGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFII 213
PPEE++P ++P + RK GCLLVGAE GDPSL+TKEY GLF SGV PKK LCRFI+
Sbjct: 138 PPEEYRPAQEPRQSRNWRKPYGCLLVGAEHGDPSLFTKEYAGLFHESGVLPKKHLCRFIV 197
Query: 214 TPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGG 273
+P+A LP GT LT +HFR +F+DVRGLTVDRGFQGV+KR GFKGMP +HGVTK+HRR G
Sbjct: 198 SPEAQLPSGTALTVSHFRVGDFVDVRGLTVDRGFQGVVKRHGFKGMPKSHGVTKTHRRPG 257
Query: 274 CIASGAGKARVYPG 287
I +G KARV+PG
Sbjct: 258 NIGAGGNKARVWPG 271
>gi|307194194|gb|EFN76611.1| 39S ribosomal protein L3, mitochondrial [Harpegnathos saltator]
Length = 348
Score = 273 bits (699), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 141/251 (56%), Positives = 182/251 (72%), Gaps = 9/251 (3%)
Query: 40 RQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNT 99
R K++ I P+ ++P W + +R Y E LT +NK F++EV+ D+ G P G+ +
Sbjct: 7 RSKRIGI--PKYRHPEWLPKPQRVRYEEQLTEDNKEFLQEVIQDKYGLPHADLGMNL--S 62
Query: 100 PLKIEPLQPL-EITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEE 158
PLK++P++P+ + KRTGLI K IG YPLW+K+G K +TL+QVVDN ++KYIPPEE
Sbjct: 63 PLKLDPIEPITKWKPGLKRTGLIAKKIGVYPLWLKDGTKVYSTLLQVVDNEVVKYIPPEE 122
Query: 159 FKP--NRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD 216
F P +KP + KR+LGCL+VGA + +P L TKEY G+FK+SGV PK L RFII+P+
Sbjct: 123 FYPVIGKKPI--QIKRRLGCLVVGAGNINPQLVTKEYSGIFKDSGVMPKLVLRRFIISPE 180
Query: 217 AMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIA 276
A L PGTPL A HF+P E +D+RG T+DRGFQGVMKRWGFKGMPATHGVTK+HRR G I
Sbjct: 181 AALQPGTPLFATHFKPGEVVDIRGKTIDRGFQGVMKRWGFKGMPATHGVTKTHRRPGNIG 240
Query: 277 SGAGKARVYPG 287
SG KARV PG
Sbjct: 241 SGGQKARVMPG 251
>gi|195398797|ref|XP_002058007.1| GJ15729 [Drosophila virilis]
gi|194150431|gb|EDW66115.1| GJ15729 [Drosophila virilis]
Length = 372
Score = 273 bits (697), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 143/256 (55%), Positives = 186/256 (72%), Gaps = 6/256 (2%)
Query: 36 VINIRQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIE 95
V +R+K RP R++ P WF++KER + + +T N++FI+EVVHD G PA+ GI+
Sbjct: 25 VTQVREKGHLSRP-RLRNPYWFIRKERTQTDDLVTGENRSFIKEVVHDTYGKPALIKGIQ 83
Query: 96 TYNTPLKIE-PLQPLEI---TTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHII 151
TY I+ P+ P +I T + +R GLI + IGQYPLW+KNGE+ RTTL+QVVDNH++
Sbjct: 84 TYEQKQLIKTPVAPTDIEPWTPAVRRCGLIARKIGQYPLWLKNGERVRTTLLQVVDNHVV 143
Query: 152 KYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRF 211
KYIPP E+ P ++P R + + GC+LVGAES +P+L TKEYCG+F++SGV P K L RF
Sbjct: 144 KYIPPGEYTPAQRP-RVKHLDRYGCVLVGAESTNPALLTKEYCGIFRDSGVMPTKNLARF 202
Query: 212 IITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRR 271
I++P A L PGTPL HFR EF+DVRG TVD GFQGV+KR GFKGMPA+HGVTK+HRR
Sbjct: 203 IVSPQAALAPGTPLNVGHFRVGEFVDVRGKTVDHGFQGVVKRHGFKGMPASHGVTKTHRR 262
Query: 272 GGCIASGAGKARVYPG 287
G I G K RV+PG
Sbjct: 263 PGNIGGGGEKGRVWPG 278
>gi|340718066|ref|XP_003397493.1| PREDICTED: 39S ribosomal protein L3, mitochondrial-like [Bombus
terrestris]
Length = 367
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 131/240 (54%), Positives = 168/240 (70%), Gaps = 6/240 (2%)
Query: 48 PPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQ 107
PP+ ++P W + R Y E L+ NK F+ E + G ++ +PL E +Q
Sbjct: 37 PPKKRHPEWLPKPTRTRYNEELSPENKEFLSEFISANNGL------LDVQKSPLNTELVQ 90
Query: 108 PLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYR 167
T SKRTGLIGK IG YP+W+KNG+K TTL+Q+VDN ++KY+PPEEF P ++
Sbjct: 91 SATWTPGSKRTGLIGKKIGVYPMWLKNGKKVTTTLIQIVDNEVVKYMPPEEFNPVKRTKH 150
Query: 168 GEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTA 227
+PK K GCL++GA + DP L TKEY G+F +GV PKK L RF+++P+A L PGTPL A
Sbjct: 151 LQPKVKNGCLVLGAVNIDPQLLTKEYYGIFNAAGVTPKKTLMRFVVSPNAALQPGTPLCA 210
Query: 228 AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
AHF+P EF+D+RG T+DRGFQGVMKRWGFKGMPA+HGVTK+HRR G I SG KARV PG
Sbjct: 211 AHFKPGEFIDIRGKTIDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGTKARVMPG 270
>gi|350420889|ref|XP_003492662.1| PREDICTED: 39S ribosomal protein L3, mitochondrial-like [Bombus
impatiens]
Length = 367
Score = 270 bits (691), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 132/240 (55%), Positives = 168/240 (70%), Gaps = 6/240 (2%)
Query: 48 PPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQ 107
PP+ ++P W + R Y E L+ NK F+ E V G V+ +PL E +Q
Sbjct: 37 PPKKRHPQWLPKPTRIRYNEELSPENKEFLSEFVSANNGLLGVQK------SPLNTELVQ 90
Query: 108 PLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYR 167
T SKRTGLIGK IG YP+W+KNG+K TTL+Q+VDN ++KY+PPE+F P ++
Sbjct: 91 SATWTPGSKRTGLIGKKIGVYPMWLKNGKKVTTTLIQIVDNEVVKYMPPEQFNPVKRTKH 150
Query: 168 GEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTA 227
+PK K GCL++GA + DP L TKEY G+F +GV PKK L RF+++P+A L PGTPL A
Sbjct: 151 LQPKVKNGCLVLGAVNIDPQLLTKEYYGIFNEAGVTPKKTLMRFVVSPNAALQPGTPLCA 210
Query: 228 AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
AHF+P EF+D+RG T+DRGFQGVMKRWGFKGMPA+HGVTK+HRR G I SG KARV PG
Sbjct: 211 AHFKPGEFIDIRGKTIDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGTKARVMPG 270
>gi|195059563|ref|XP_001995662.1| GH17642 [Drosophila grimshawi]
gi|193896448|gb|EDV95314.1| GH17642 [Drosophila grimshawi]
Length = 373
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 140/261 (53%), Positives = 178/261 (68%), Gaps = 16/261 (6%)
Query: 36 VINIRQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIE 95
+ +R+K RP R++ P WF++++R + +T N+ FI+EVVHD G PA+ G +
Sbjct: 25 ITQVREKGHLSRP-RLRNPYWFIRQQRTRTDDLVTGENRTFIKEVVHDTYGVPALIKGTQ 83
Query: 96 TYN---------TPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVV 146
TY P EP P + +R GLI + IGQYPLW+KNGE+ RTTL+QVV
Sbjct: 84 TYEQKQLIKTTEAPTDAEPWTP-----AVRRCGLIARKIGQYPLWLKNGERVRTTLLQVV 138
Query: 147 DNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKK 206
DNH+IKYIPPEE++P ++P K GC+LVGAE +P+L TKEYCGLF++SGV PKK
Sbjct: 139 DNHVIKYIPPEEYRPTQRP-NVHHLNKYGCVLVGAECTNPALLTKEYCGLFRDSGVMPKK 197
Query: 207 KLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVT 266
L RFI++P A L GTPL HFR EF+DVRG TVD GFQGV+KR GFKGMPA+HGVT
Sbjct: 198 NLARFIVSPQAALAAGTPLNVGHFRVGEFVDVRGKTVDHGFQGVVKRHGFKGMPASHGVT 257
Query: 267 KSHRRGGCIASGAGKARVYPG 287
K+HRR G I G K RV+PG
Sbjct: 258 KTHRRAGNIGGGGEKGRVWPG 278
>gi|312375540|gb|EFR22896.1| hypothetical protein AND_14042 [Anopheles darlingi]
Length = 1032
Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 134/254 (52%), Positives = 180/254 (70%), Gaps = 2/254 (0%)
Query: 36 VINIRQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIE 95
++N + K ++ PR++ P+WF++K R + E T+ N AF+ EV + A A ++
Sbjct: 677 IVNPARSKNYLNRPRLRNPVWFVKKTRTLHDEQFTQENSAFLGEVRRETVQAAADRNQAN 736
Query: 96 TYNTPLKIEPLQPL-EITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYI 154
E P+ E KRTG+I K IGQYPLW +NG K RTTL+Q+V+N ++KYI
Sbjct: 737 LLQLRTGGEEAGPVAEWAPGLKRTGVIAKKIGQYPLWTRNGTKIRTTLLQIVENEVVKYI 796
Query: 155 PPEEFKPNRKP-YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFII 213
PPEE++P ++P R +R GCLLVGAE+GDPSL+TKEY GLF+++GV PK+ LCRF++
Sbjct: 797 PPEEYRPAQEPRQRRNWRRPYGCLLVGAENGDPSLFTKEYAGLFQHTGVLPKQHLCRFLV 856
Query: 214 TPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGG 273
+P+A LPPGT LT HFR +++DVRG TVDRGFQGV+KR GFKGMP THGVTK+HRR G
Sbjct: 857 SPEAQLPPGTALTVDHFRVGDYVDVRGKTVDRGFQGVVKRHGFKGMPKTHGVTKTHRRPG 916
Query: 274 CIASGAGKARVYPG 287
I +G KARV+PG
Sbjct: 917 NIGAGGQKARVWPG 930
>gi|170064762|ref|XP_001867661.1| mitochondrial 39S ribosomal protein L3 [Culex quinquefasciatus]
gi|167882034|gb|EDS45417.1| mitochondrial 39S ribosomal protein L3 [Culex quinquefasciatus]
Length = 371
Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 143/268 (53%), Positives = 195/268 (72%), Gaps = 6/268 (2%)
Query: 25 FETPFLFGCSEVINIRQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQ 84
F P F + ++ +R K ++ PR++ P+WF++KER + E +T N +F++EV++++
Sbjct: 9 FSIPQKFTLTGLLQVRAKN-YLNRPRLRNPVWFVRKERTVHDELITPENTSFVKEVLYER 67
Query: 85 CGAPAVKSGIETYN----TPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRT 140
G A+ G+ T++ + +K E L P++ KRTG+I K IGQYPLW K+G K RT
Sbjct: 68 YGPSALIKGVLTFDQSKSSLIKSEELPPVQWQPGMKRTGVIAKKIGQYPLWRKDGTKIRT 127
Query: 141 TLVQVVDNHIIKYIPPEEFKPNRKPYRGEP-KRKLGCLLVGAESGDPSLYTKEYCGLFKN 199
TL+Q++DNH++KYIPPEEF+P R+P + K GCLLVGAES DPS++TKEYCGLFK+
Sbjct: 128 TLLQIIDNHVVKYIPPEEFEPPREPNQKRNWKNPYGCLLVGAESRDPSIFTKEYCGLFKD 187
Query: 200 SGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGM 259
SGV PK+ LCRFII+P+A + PGTPL HFR +F+DVRG TVD GFQGV+KR FKGM
Sbjct: 188 SGVIPKQHLCRFIISPEARILPGTPLNVTHFRVGDFVDVRGKTVDHGFQGVVKRHSFKGM 247
Query: 260 PATHGVTKSHRRGGCIASGAGKARVYPG 287
PA+HGVTK+HRR G I +G KARV+PG
Sbjct: 248 PASHGVTKTHRRPGNIGAGGAKARVWPG 275
>gi|195133722|ref|XP_002011288.1| GI16081 [Drosophila mojavensis]
gi|193907263|gb|EDW06130.1| GI16081 [Drosophila mojavensis]
Length = 369
Score = 266 bits (680), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 141/267 (52%), Positives = 185/267 (69%), Gaps = 17/267 (6%)
Query: 33 CSEVINIRQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKS 92
CS V +R+K RP R++ P WF++++R++ + +T N++FI+EV+HD G PA+
Sbjct: 19 CS-VTQVREKGHLNRP-RLRNPYWFIRQQRSQTDDQVTGENRSFIKEVIHDTYGTPALIK 76
Query: 93 GIETYNT---------PLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLV 143
G++TY P+ EP P + +R G+I + IGQYPLW+KNGE+ RTTL+
Sbjct: 77 GVQTYEQKQLIKTNELPVPTEPWTP-----AVRRCGVIARKIGQYPLWLKNGERIRTTLL 131
Query: 144 QVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVP 203
QVVDNH+IKYIPPEE+KP ++P R GC+LVGAES +P+ TKEYCG+F++SGV
Sbjct: 132 QVVDNHVIKYIPPEEYKPTQRPNVHNLNR-YGCVLVGAESTNPAQLTKEYCGIFRDSGVM 190
Query: 204 PKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATH 263
P K L RFI++P A L PGTPL HFR EF+DVRG TV GFQGV+KR GFKGMPA+H
Sbjct: 191 PTKNLARFIVSPQAALAPGTPLNVGHFRVGEFVDVRGKTVYHGFQGVVKRHGFKGMPASH 250
Query: 264 GVTKSHRRGGCIASGAGKARVYPGGVL 290
GVTK+HRR G I G K RV+PG L
Sbjct: 251 GVTKTHRRPGNIGGGGEKGRVWPGTKL 277
>gi|307189923|gb|EFN74159.1| 39S ribosomal protein L3, mitochondrial [Camponotus floridanus]
Length = 370
Score = 266 bits (680), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 134/242 (55%), Positives = 181/242 (74%), Gaps = 7/242 (2%)
Query: 49 PRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQP 108
P+ ++P W + ++ E+LT++NK FIEE+V D +P ++ G + +PLKI+P++P
Sbjct: 36 PKYRHPEWLPKVTHVKHDEHLTQDNKEFIEEIVQDNYDSP-IEFGTQI--SPLKIDPIEP 92
Query: 109 L-EITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNR--KP 165
+ + +RTGLI K IG YPLW+K+G+K +TL+Q+VDN ++KY+PPE+F P R KP
Sbjct: 93 ITKWRKGLRRTGLIAKKIGVYPLWLKDGKKVSSTLLQIVDNEVVKYMPPEKFHPVRSCKP 152
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+ KR+LGCL+VGAE+ DP TKEY G+FK++GV PK+ L RFII+P+A L PGTPL
Sbjct: 153 PL-QIKRRLGCLVVGAENIDPQWVTKEYYGMFKDTGVIPKRVLRRFIISPEAALQPGTPL 211
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
AAHF+P E +D+R T+DRGFQGVMKRWGFKGMPA+HGVTK+HRR G I SG KARV
Sbjct: 212 IAAHFKPGEIVDIRAKTIDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGRKARVM 271
Query: 286 PG 287
PG
Sbjct: 272 PG 273
>gi|357622884|gb|EHJ74244.1| Mitochondrial 39S ribosomal protein L3 [Danaus plexippus]
Length = 275
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 131/254 (51%), Positives = 178/254 (70%), Gaps = 8/254 (3%)
Query: 36 VINIRQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIE 95
V N+ K+ + +PP+ + P W++ KER + +T++NK FI+EV D+ A
Sbjct: 18 VENVTIKRNFYQPPKYRPPHWYMPKERVLTDDMVTQDNKDFIDEVRQDKLNLQAA----- 72
Query: 96 TYNTPL-KIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYI 154
+PL KIE + L+ +++R GLI + IG YPLW K G+K +TTL+QVVDNH+IKYI
Sbjct: 73 -MESPLSKIESQETLQWDPTTRRVGLIARKIGNYPLWTKTGKKVQTTLLQVVDNHVIKYI 131
Query: 155 PPEEFKPNRK-PYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFII 213
PPEE+ P + + K KLGC+LVG+E+ DP+ TK+YCG+F + G+ PK+ LCRF +
Sbjct: 132 PPEEYTPAKDFKLKKVGKYKLGCMLVGSETIDPTTVTKDYCGIFTSVGMLPKRHLCRFHV 191
Query: 214 TPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGG 273
+P A LP GTPL A HFR ++LD+R T+DRGFQGVMKRWGFKGMPA+HGVTK+HRR G
Sbjct: 192 SPSAQLPTGTPLFATHFRVGDYLDIRAKTIDRGFQGVMKRWGFKGMPASHGVTKTHRRPG 251
Query: 274 CIASGAGKARVYPG 287
I +G KARV+PG
Sbjct: 252 NIGAGGEKARVWPG 265
>gi|289740087|gb|ADD18791.1| mitochondrial ribosomal protein L3 [Glossina morsitans morsitans]
Length = 367
Score = 263 bits (673), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 140/260 (53%), Positives = 182/260 (70%), Gaps = 7/260 (2%)
Query: 36 VINIRQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIE 95
+ +R+K RP ++ P WFL+KER +T NK+F++E+VHD G +V G++
Sbjct: 17 TLQVREKGHLSRP-HLRNPSWFLRKERKMRDNLVTAENKSFVQEIVHDVYGQSSVIKGVQ 75
Query: 96 TYNTPLKIEPLQPLE-----ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI 150
+ N + + ++ + T +++RTG+I + IGQYPLW+KNGEK RTTL+QVV+NH
Sbjct: 76 SPNQICQTQLVKTGDSEVQLWTPNTRRTGVIARKIGQYPLWLKNGEKIRTTLLQVVENHA 135
Query: 151 IKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCR 210
IKY PPEE+KP +P E K GCLLVGAES DPS+ TKEYC LFKNSGV PK+ L R
Sbjct: 136 IKYTPPEEYKPAHRPKVAE-LNKYGCLLVGAESCDPSILTKEYCNLFKNSGVTPKRHLVR 194
Query: 211 FIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
F+I+P A + PGTPL A HFR +++DVRG TVD GFQGV+KR GFKGMPA+HGVTK+HR
Sbjct: 195 FLISPSAAITPGTPLNANHFRVGDYVDVRGKTVDHGFQGVVKRHGFKGMPASHGVTKTHR 254
Query: 271 RGGCIASGAGKARVYPGGVL 290
R G I G K RV+PG L
Sbjct: 255 RPGNIGGGGEKGRVWPGTKL 274
>gi|380013161|ref|XP_003690636.1| PREDICTED: 39S ribosomal protein L3, mitochondrial-like [Apis
florea]
Length = 364
Score = 263 bits (673), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 135/241 (56%), Positives = 167/241 (69%), Gaps = 8/241 (3%)
Query: 48 PPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQ 107
PP+ ++P W + R Y E LT NK F+ E+V G + +PL E +Q
Sbjct: 37 PPKKRHPEWLPKPTRVLYNEELTSENKEFLSEIVSSTKGL------LNKNTSPLNKELIQ 90
Query: 108 P-LEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPY 166
T SKRTGLIGK IG YP+W+KNG+K TTL+Q+VDN ++KYIPPEE+KP KP
Sbjct: 91 SNATWTPGSKRTGLIGKKIGVYPMWLKNGQKVLTTLIQIVDNEVVKYIPPEEYKP-VKPI 149
Query: 167 RGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLT 226
R K K GCL++GA + DP L TKEY G+F ++GV PKK L RF I+P+A+L PGTPL
Sbjct: 150 RHRVKVKNGCLVLGAINIDPQLLTKEYYGIFNSAGVTPKKILMRFTISPNAVLQPGTPLY 209
Query: 227 AAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYP 286
A HF+P EF+D+RG T+DRGFQGVMKRWGFKGMPA+HGVTK+HRR G I SG ARV P
Sbjct: 210 ATHFKPGEFIDIRGKTIDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGALARVMP 269
Query: 287 G 287
G
Sbjct: 270 G 270
>gi|156553318|ref|XP_001600461.1| PREDICTED: 39S ribosomal protein L3, mitochondrial-like [Nasonia
vitripennis]
Length = 375
Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 129/252 (51%), Positives = 175/252 (69%), Gaps = 4/252 (1%)
Query: 40 RQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNT 99
R KK+ PR ++P WF+++ R ++ E+LT+ NK FI+ V+ D+ P + G +
Sbjct: 30 RGKKLLNPYPRKRFPPWFVKQTRVQHEEDLTKENKEFIQTVIRDKYPLPDIGFGSAS--- 86
Query: 100 PLKIEPLQPL-EITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEE 158
PLK+E ++P+ E +R G++ + IG P+WMK+G+K TT+ QV DNH+IKYIPPEE
Sbjct: 87 PLKLETIEPVTEWKPHYQRVGVLARKIGIVPMWMKDGKKVLTTMFQVADNHVIKYIPPEE 146
Query: 159 FKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAM 218
+KP + R GCLLVGA+S DP L+TKEYCGLF +GV PK+ L RF ++P+
Sbjct: 147 YKPMITQKKNPLPRNTGCLLVGADSCDPQLFTKEYCGLFNEAGVMPKRLLARFHVSPEGA 206
Query: 219 LPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASG 278
L PGTPL A H++ +++D+RG T+DRGFQGVMKRWGF GMPA+HGVTK+HRR G I SG
Sbjct: 207 LQPGTPLFATHYKIGQYIDIRGKTIDRGFQGVMKRWGFHGMPASHGVTKTHRRPGNIGSG 266
Query: 279 AGKARVYPGGVL 290
KARV PG L
Sbjct: 267 GKKARVMPGTKL 278
>gi|328781504|ref|XP_625054.3| PREDICTED: 39S ribosomal protein L3, mitochondrial [Apis mellifera]
Length = 364
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 134/241 (55%), Positives = 166/241 (68%), Gaps = 8/241 (3%)
Query: 48 PPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQ 107
PP+ ++P W + R Y E LT NK F+ E+V G + +PL E +Q
Sbjct: 37 PPKKRHPEWLPKPTRVLYNEELTSENKEFLSEIVSSTKGL------LNNNTSPLNNELIQ 90
Query: 108 P-LEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPY 166
T +SKRTGLIGK IG YP+W+KNG K TTL+Q+VDN ++KYIPPEE+KP KP
Sbjct: 91 SNATWTPNSKRTGLIGKKIGVYPMWLKNGRKVLTTLIQIVDNEVVKYIPPEEYKP-VKPI 149
Query: 167 RGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLT 226
R + K GCL++GA + DP L TKEY G+F +GV PKK L RF I+P+A+L PGTPL
Sbjct: 150 RHRIEVKNGCLVLGAINVDPQLLTKEYYGIFNKAGVTPKKVLMRFTISPNAVLQPGTPLY 209
Query: 227 AAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYP 286
A HF+P EF+D+RG T+DRGFQGVMKRWGFKGMPA+HGVTK+HRR G I SG ARV P
Sbjct: 210 ATHFKPGEFIDIRGKTIDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGKLARVMP 269
Query: 287 G 287
G
Sbjct: 270 G 270
>gi|195566964|ref|XP_002107045.1| GD17236 [Drosophila simulans]
gi|194204442|gb|EDX18018.1| GD17236 [Drosophila simulans]
Length = 362
Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 134/256 (52%), Positives = 177/256 (69%), Gaps = 6/256 (2%)
Query: 33 CSEVINIRQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAV-K 91
CS ++ + K + PR++ P WFL+KE +Y + +T NK F+ EV + G PAV K
Sbjct: 18 CSVLVTQVRDKGHLSRPRLRNPQWFLRKEITKYNDLMTAENKQFVNEVGTNNFGVPAVIK 77
Query: 92 SGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHII 151
+ P E + T +S+R G+I + IGQYPLW+KNGE+ RTTL+Q+ DNH+I
Sbjct: 78 DSLVKTEAPTANEAVW----TPNSRRCGVIARKIGQYPLWLKNGERIRTTLLQIADNHVI 133
Query: 152 KYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRF 211
KYIPPEE+ P + P ++ GC+LVG+E+ +P+L TKEY G+F+NSGV PKK L RF
Sbjct: 134 KYIPPEEYLPAQVPKVANLHKR-GCILVGSETTNPALLTKEYAGIFRNSGVLPKKNLARF 192
Query: 212 IITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRR 271
I++P+A L PGTPLT HFR +F+DVRG TVD GFQGV+KR GFKGMPA+HGVTK+HRR
Sbjct: 193 IVSPEAQLAPGTPLTVNHFRIGDFVDVRGKTVDHGFQGVVKRHGFKGMPASHGVTKTHRR 252
Query: 272 GGCIASGAGKARVYPG 287
G I G K RV+PG
Sbjct: 253 AGNIGGGGEKGRVWPG 268
>gi|383854225|ref|XP_003702622.1| PREDICTED: 39S ribosomal protein L3, mitochondrial-like [Megachile
rotundata]
Length = 367
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 168/242 (69%), Gaps = 12/242 (4%)
Query: 49 PRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGA--PAVKSGIETYNTPLKIEPL 106
PR ++P W + R + E LT+ NK FI +VV G P + NTPL +
Sbjct: 38 PRKRHPEWLPKPTRVQSNEKLTQENKEFISDVVISTKGLLNPPI-------NTPLNATLI 90
Query: 107 -QPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKP 165
E T +SKRTGLIGK +G YP+W+KNG++ +TL+Q+VDN ++KYIPPEEF P +
Sbjct: 91 PTATEWTANSKRTGLIGKKLGSYPMWLKNGKRIISTLIQIVDNEVVKYIPPEEFNPVVRT 150
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+ K K GCL+VGAE+ DP L TKEY G+F +GV PKK L RFII+P+A+L PGTPL
Sbjct: 151 RHKQVKVKNGCLVVGAENIDPQLLTKEYYGIFNKAGVTPKKMLMRFIISPNAVLQPGTPL 210
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
A HF+P E++D+RG T+DRGFQGVMKRWGF GMPA+HGVTK+HRR G I GA KARV
Sbjct: 211 MATHFKPGEYIDIRGKTIDRGFQGVMKRWGFHGMPASHGVTKTHRRPGNI--GAPKARVM 268
Query: 286 PG 287
PG
Sbjct: 269 PG 270
>gi|195355411|ref|XP_002044185.1| GM22578 [Drosophila sechellia]
gi|194129474|gb|EDW51517.1| GM22578 [Drosophila sechellia]
Length = 362
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 132/256 (51%), Positives = 175/256 (68%), Gaps = 6/256 (2%)
Query: 33 CSEVINIRQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAV-K 91
CS ++ + K + PR++ P WFL+KE +Y + +T NK F+ EV + G PAV K
Sbjct: 18 CSVLVTQVRDKGHLSRPRLRNPQWFLRKEITKYNDLMTAENKQFVNEVGTNNFGVPAVIK 77
Query: 92 SGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHII 151
+ P E + T + +R G+I + IGQYPLW+KNGE+ RTTL+Q+ DNH+I
Sbjct: 78 DSLVRTEAPTANEAVW----TPNLRRCGVIARKIGQYPLWLKNGERIRTTLLQIADNHVI 133
Query: 152 KYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRF 211
KYIPPEE+ P + P ++ GC+LVG+E+ +P+L TKEY G+F+NSGV PKK L RF
Sbjct: 134 KYIPPEEYLPAQVPKVANLHKR-GCILVGSETTNPALLTKEYAGIFRNSGVLPKKNLARF 192
Query: 212 IITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRR 271
I++P+A L PGTPL HFR +F+DVRG TVD GFQGV+KR GFKGMPA+HGVTK+HRR
Sbjct: 193 IVSPEAQLAPGTPLNVNHFRIGDFVDVRGKTVDHGFQGVVKRHGFKGMPASHGVTKTHRR 252
Query: 272 GGCIASGAGKARVYPG 287
G I G K RV+PG
Sbjct: 253 AGNIGGGGEKGRVWPG 268
>gi|194894275|ref|XP_001978039.1| GG17909 [Drosophila erecta]
gi|190649688|gb|EDV46966.1| GG17909 [Drosophila erecta]
Length = 362
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 134/256 (52%), Positives = 175/256 (68%), Gaps = 6/256 (2%)
Query: 33 CSEVINIRQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKS 92
CS ++ + K + PR++ P WFL+KE +Y + +T NK FI EV D G PAVK
Sbjct: 18 CSVMVTQVRDKGHLSRPRLRNPQWFLRKEITKYNDLMTAENKQFINEVGTDNFGVPAVKK 77
Query: 93 GIETYNTPLKIEPLQPLEITTSS-KRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHII 151
N EP + T + +R G+I + IGQYPLW+KNGE+ RTTL+Q+ DNH+I
Sbjct: 78 D----NLVKTAEPSANEAVWTPNLRRCGVIARKIGQYPLWLKNGERIRTTLLQIADNHVI 133
Query: 152 KYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRF 211
KYIPPEE+ P + P ++ GC+LVG+E+ +P+L TKEY G+F+NSGV PKK L RF
Sbjct: 134 KYIPPEEYLPAQVPKIANLHKR-GCILVGSETTNPALLTKEYAGIFRNSGVLPKKNLARF 192
Query: 212 IITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRR 271
I++P+A L GTPL+ HFR +F+DVRG TVD GFQGV+KR GFKGMPA+HGVTK+HRR
Sbjct: 193 IVSPEAQLEAGTPLSVNHFRIGDFVDVRGKTVDHGFQGVVKRHGFKGMPASHGVTKTHRR 252
Query: 272 GGCIASGAGKARVYPG 287
G I G K RV+PG
Sbjct: 253 AGNIGGGGEKGRVWPG 268
>gi|24642280|ref|NP_511166.2| mitochondrial ribosomal protein L3 [Drosophila melanogaster]
gi|22832292|gb|AAF48508.2| mitochondrial ribosomal protein L3 [Drosophila melanogaster]
Length = 362
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/261 (52%), Positives = 178/261 (68%), Gaps = 9/261 (3%)
Query: 30 LFGCSEVI--NIRQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGA 87
L G S V+ +R K RP R++ P WFL+KE +Y + +T NK F+ EV + G
Sbjct: 14 LSGNSSVLVTQVRDKGHLSRP-RLRNPQWFLRKEITKYNDLMTAENKQFVNEVGTNNFGV 72
Query: 88 PAV-KSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVV 146
PAV K + P E + T + +R G+I + IGQYPLW+KNGE+ RTTL+Q+V
Sbjct: 73 PAVIKDSLVKTAGPTANEAVW----TPNLRRCGVIARKIGQYPLWLKNGERIRTTLLQIV 128
Query: 147 DNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKK 206
DNH+IKYIPPEE+ P + P ++ GC+LVG+E+ +P+L TKEY G+F+NSGV PKK
Sbjct: 129 DNHVIKYIPPEEYLPAQVPTVANLHKR-GCILVGSETTNPALLTKEYAGIFRNSGVLPKK 187
Query: 207 KLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVT 266
L RFI++P+A L PGTPL HFR +F+DVRG TVD GFQGV+KR GFKGMPA+HGVT
Sbjct: 188 NLARFIVSPEAQLAPGTPLNVNHFRVGDFVDVRGKTVDHGFQGVVKRHGFKGMPASHGVT 247
Query: 267 KSHRRGGCIASGAGKARVYPG 287
K+HRR G I G K RV+PG
Sbjct: 248 KTHRRAGNIGGGGEKGRVWPG 268
>gi|91082959|ref|XP_973661.1| PREDICTED: similar to Mitochondrial 39S ribosomal protein L3
[Tribolium castaneum]
gi|270007629|gb|EFA04077.1| hypothetical protein TcasGA2_TC014311 [Tribolium castaneum]
Length = 355
Score = 249 bits (637), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 132/272 (48%), Positives = 176/272 (64%), Gaps = 16/272 (5%)
Query: 18 LSRKSNIFETPFLFGCSEVINIRQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFI 77
LS + E L +++R++ PP+++ P WF QK R + + LT N+ F+
Sbjct: 5 LSTTVKLLEDKLLSLTISCMSVRERHKLNPPPKLRNPTWFTQKNRVSFTDPLTTENQEFL 64
Query: 78 EEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEIT--TSSKRTGLIGKIIGQYPLWMKNG 135
+EVV DQC + E + L++ +RTG+I + IG YP+W+KNG
Sbjct: 65 KEVVQDQCNN-------------ISSEKPKDLDVVWRPGLQRTGVIARKIGIYPMWLKNG 111
Query: 136 EKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCG 195
+K TTL+QV+DN +IKY PE + P R P G + GCLL+GAE GDPS +T+EYCG
Sbjct: 112 KKISTTLLQVLDNQVIKYYTPESYNPPR-PRAGRVSNRKGCLLLGAEQGDPSEFTREYCG 170
Query: 196 LFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWG 255
+FK+SGV PKK L RF ++PDA LPPGT ++A HF ++DVRGLT+DRGFQGVMKR G
Sbjct: 171 IFKDSGVIPKKTLARFFVSPDAALPPGTSISALHFCVGNYVDVRGLTIDRGFQGVMKRHG 230
Query: 256 FKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
FKGMPA+HGVTK+HRRGG I G K RV+PG
Sbjct: 231 FKGMPASHGVTKTHRRGGNIGGGGEKGRVWPG 262
>gi|21430844|gb|AAM51100.1| SD19562p [Drosophila melanogaster]
Length = 362
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 136/261 (52%), Positives = 177/261 (67%), Gaps = 9/261 (3%)
Query: 30 LFGCSEVI--NIRQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGA 87
L G S V+ +R K RP R++ P WFL+KE +Y + +T NK F+ EV + G
Sbjct: 14 LSGNSSVLVTQVRDKGHLSRP-RLRNPQWFLRKEITKYNDLMTAENKQFVNEVGTNNFGV 72
Query: 88 PAV-KSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVV 146
P V K + P E + T + +R G+I + IGQYPLW+KNGE+ RTTL+Q+V
Sbjct: 73 PVVIKDCLVKTAGPTANEAVW----TPNLRRCGVIARKIGQYPLWLKNGERIRTTLLQIV 128
Query: 147 DNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKK 206
DNH+IKYIPPEE+ P + P ++ GC+LVG+E+ +P+L TKEY G+F+NSGV PKK
Sbjct: 129 DNHVIKYIPPEEYLPAQVPTVANLHKR-GCILVGSETTNPALLTKEYAGIFRNSGVLPKK 187
Query: 207 KLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVT 266
L RFI++P+A L PGTPL HFR +F+DVRG TVD GFQGV+KR GFKGMPA+HGVT
Sbjct: 188 NLARFIVSPEAQLAPGTPLNVNHFRVGDFVDVRGKTVDHGFQGVVKRHGFKGMPASHGVT 247
Query: 267 KSHRRGGCIASGAGKARVYPG 287
K+HRR G I G K RV+PG
Sbjct: 248 KTHRRAGNIGGGGEKGRVWPG 268
>gi|322799942|gb|EFZ21068.1| hypothetical protein SINV_02593 [Solenopsis invicta]
Length = 366
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 127/243 (52%), Positives = 167/243 (68%), Gaps = 14/243 (5%)
Query: 49 PRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQP 108
PR + P W + +R Y E LT +NK F+ E+V D+ + +PLKI+ ++P
Sbjct: 38 PRYRPPEWLPKTQRILYDEQLTEDNKQFLNEIVEDKYDPSKL--------SPLKIDLIEP 89
Query: 109 -LEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKP---NRK 164
+E KRTGLI K IG YPLW+KNG+K +TL+Q+VDN ++KYIPPE++ P R
Sbjct: 90 TVEWKQGMKRTGLIAKKIGVYPLWLKNGKKVTSTLLQIVDNEVVKYIPPEKYNPVKSKRP 149
Query: 165 PYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTP 224
P + K++ GCL+VGAE+ +P L TKEY +F ++GV PK+ L RF+I+P+A L PGTP
Sbjct: 150 PI--QVKKRRGCLVVGAENINPQLITKEYYSIFNDTGVMPKRVLRRFVISPEAALQPGTP 207
Query: 225 LTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARV 284
L A HF+P E +D+RG TVDRGFQGVMKRWGF G PA+HG TK+HRR G I SG KARV
Sbjct: 208 LFATHFKPGEVVDIRGKTVDRGFQGVMKRWGFHGQPASHGQTKTHRRPGNIGSGGTKARV 267
Query: 285 YPG 287
PG
Sbjct: 268 MPG 270
>gi|195478966|ref|XP_002100716.1| GE17217 [Drosophila yakuba]
gi|194188240|gb|EDX01824.1| GE17217 [Drosophila yakuba]
Length = 359
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 130/256 (50%), Positives = 173/256 (67%), Gaps = 9/256 (3%)
Query: 33 CSEVINIRQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKS 92
CS ++ + K + PR + P WFL+KE +Y + +T NK F+ EV D G
Sbjct: 18 CSVMVTQVRDKGHLSRPRQRNPQWFLRKEITKYNDLMTAENKQFVNEVGTDNYG------ 71
Query: 93 GIETYNTPLKIEPLQPLEITTSS-KRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHII 151
++ N EP + T + +R G+I + IGQYPLW+KNGE+ RTTL+Q+ DNH+I
Sbjct: 72 -VKKDNLVKTAEPSANEAVWTPNLRRCGVIARKIGQYPLWLKNGERIRTTLLQIADNHVI 130
Query: 152 KYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRF 211
KYIPPEE+ P + P ++ GC+LVG+E+ +P+L TKEY G+F+NSGV PKK L RF
Sbjct: 131 KYIPPEEYLPAQVPTVANLHKR-GCILVGSETTNPALLTKEYAGIFRNSGVLPKKNLARF 189
Query: 212 IITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRR 271
I++P+A L PGTPL+ HFR +F+DVRG TVD GFQGV+KR GFKGMPA+HGVTK+HRR
Sbjct: 190 IVSPEAQLEPGTPLSVNHFRIGDFVDVRGKTVDHGFQGVVKRHGFKGMPASHGVTKTHRR 249
Query: 272 GGCIASGAGKARVYPG 287
G I G K RV+PG
Sbjct: 250 AGNIGGGGEKGRVWPG 265
>gi|195175673|ref|XP_002028553.1| GL21035 [Drosophila persimilis]
gi|194104883|gb|EDW26926.1| GL21035 [Drosophila persimilis]
Length = 368
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 126/253 (49%), Positives = 172/253 (67%), Gaps = 13/253 (5%)
Query: 43 KVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIE------- 95
K ++ PR++ P W L+KER + +T N+ F+ E+V+D+ G PA+ I+
Sbjct: 27 KGYLSRPRLRNPYWNLRKERTNTEDFVTAENQHFVNELVYDKYGTPALIKSIQAHANKFI 86
Query: 96 -TYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYI 154
TY+ I P P ++R G+I + IGQYPLW+KNG+K RTTL+Q+ DNH+IKY+
Sbjct: 87 QTYDPEDGIRPWSP-----HTRRCGVIARKIGQYPLWLKNGKKVRTTLLQIADNHVIKYM 141
Query: 155 PPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIIT 214
P EE +P + R + GCLLVGAES +PS+ TKEYCG+F+++GV PKK + RF+++
Sbjct: 142 PHEECRPQKNLSRVHNSNQYGCLLVGAESTNPSMLTKEYCGIFRDAGVVPKKNIMRFMVS 201
Query: 215 PDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
PD L PGTPL + FR E++DVRG TVD GFQGV+KR G+KGMPA+HGVTK+HRR G
Sbjct: 202 PDGALAPGTPLNISRFRVGEYVDVRGKTVDHGFQGVVKRHGYKGMPASHGVTKTHRRPGN 261
Query: 275 IASGAGKARVYPG 287
I G K RV+PG
Sbjct: 262 IGGGGEKGRVWPG 274
>gi|332375120|gb|AEE62701.1| unknown [Dendroctonus ponderosae]
Length = 366
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 138/282 (48%), Positives = 174/282 (61%), Gaps = 12/282 (4%)
Query: 7 LRLALSNCNRILSRKSNIFETPFLFGCSEVINIRQKKVWIRP-PRVKYPLWFLQKERAEY 65
+ L L+ +R S I E L S R+ RP PR++ P W K R
Sbjct: 1 MALTLNVASRSCSVLKLIEEKLRLLSVSTTFQ-RESHYQKRPKPRLRNPSWLTPKARTIG 59
Query: 66 IENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKII 125
EN T N+ F+ E+V D+ KS K P+ T +RTG+I K I
Sbjct: 60 EENFTPENRDFLAEIVDDKLKQCTEKS---------KQIVTSPVPWTPKLQRTGVIAKKI 110
Query: 126 GQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGD 185
G YPLW+KNG + +TTL+QV+DNH+I+Y PEE++P ++ R K GCLLVGAE GD
Sbjct: 111 GIYPLWLKNGTRIQTTLLQVLDNHVIRYYTPEEYEPVQQ-LRPRVYNKKGCLLVGAELGD 169
Query: 186 PSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDR 245
PS +T+EYCGLFK SGV P K L RF ++PDA LP GT + A HF+ ++DVRG T+DR
Sbjct: 170 PSTFTREYCGLFKESGVLPTKLLGRFFVSPDASLPQGTTINAQHFQVGNYVDVRGKTIDR 229
Query: 246 GFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GFQGVMKR GFKGMPA+HGVTKSHRR G I +G KARV+PG
Sbjct: 230 GFQGVMKRHGFKGMPASHGVTKSHRRVGNIGAGGEKARVWPG 271
>gi|194767737|ref|XP_001965971.1| GF11271 [Drosophila ananassae]
gi|190619814|gb|EDV35338.1| GF11271 [Drosophila ananassae]
Length = 354
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 126/257 (49%), Positives = 170/257 (66%), Gaps = 5/257 (1%)
Query: 34 SEVINIRQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSG 93
S VI++R K RP R++ P WFL+K+ + E T +NK FI ++V + V +
Sbjct: 6 SMVIHVRGKGHLNRP-RIRNPHWFLRKKLSNIGELTTSDNKVFINQLVRENYNEADVSNN 64
Query: 94 IETYNTPL---KIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI 150
++ Y L + P + + ++R G I + IG+YPLW+ NGEK RTTL+Q++DNHI
Sbjct: 65 LKVYEQNLMKTEASISSPSIVISQNRRCGTIARKIGEYPLWLNNGEKIRTTLLQIIDNHI 124
Query: 151 IKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCR 210
I YIPPE++ P P + K GCLLVGA + +P+ TKEYCG+F S V PKK L R
Sbjct: 125 ISYIPPEKYSPAHYP-NVKNVNKFGCLLVGAGTINPTWLTKEYCGIFHESRVMPKKMLAR 183
Query: 211 FIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
F+++P+A L PGT L AH+R EF+DVRG T+D GFQGV+KR+GFKGMPA+HGVTK+HR
Sbjct: 184 FLVSPEAALHPGTALNVAHYRVGEFVDVRGKTIDYGFQGVVKRFGFKGMPASHGVTKTHR 243
Query: 271 RGGCIASGAGKARVYPG 287
R G I G K RV+PG
Sbjct: 244 RVGNIGGGGEKGRVWPG 260
>gi|332028651|gb|EGI68685.1| 39S ribosomal protein L3, mitochondrial [Acromyrmex echinatior]
Length = 271
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/174 (63%), Positives = 137/174 (78%), Gaps = 3/174 (1%)
Query: 116 KRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKP--NRKPYRGEPKRK 173
KRTGLI K IG YPLW+KNG+K +TL+QVVDN I+KYIPPE+F P ++KP + K +
Sbjct: 2 KRTGLIAKKIGVYPLWLKNGKKVNSTLLQVVDNEIVKYIPPEKFFPVKSKKPAI-QIKNR 60
Query: 174 LGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPR 233
GCL+VGAE+ DP L TKEY +F ++GV PK+ L RFI++P+A L PGTPL A HF+P
Sbjct: 61 RGCLVVGAENIDPQLITKEYYNIFNDTGVTPKRVLRRFIVSPEAALQPGTPLFATHFKPG 120
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
E +D+RG T+DRGFQGVMKRWGFKGMPA+HGVTK+HRR G I SG K+RV PG
Sbjct: 121 EIVDIRGKTIDRGFQGVMKRWGFKGMPASHGVTKTHRRPGNIGSGGEKSRVMPG 174
>gi|242019299|ref|XP_002430099.1| 50S ribosomal protein L3, putative [Pediculus humanus corporis]
gi|212515180|gb|EEB17361.1| 50S ribosomal protein L3, putative [Pediculus humanus corporis]
Length = 327
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/222 (53%), Positives = 155/222 (69%), Gaps = 3/222 (1%)
Query: 69 LTRNNKAFIEEVVHDQCGAPAVKSGIETY-NTPLKIEPLQPLEITTSSKRTGLIGKIIGQ 127
LT NK FIEE + ++ G K G +TY +TPL+ EPL + + +R+GLIG IG
Sbjct: 2 LTEENKKFIEEQIVEKYGPATDKHGFKTYEHTPLQKEPLLRGKWFPNCRRSGLIGIKIGV 61
Query: 128 YPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPY--RGEPKRKLGCLLVGAESGD 185
P W NG+ TTL+Q+VDNH+I YIPP++F N+K R + KLGCL+VG+ + D
Sbjct: 62 LPQWHTNGKPLLTTLIQIVDNHVISYIPPKDFIVNKKRLGRRFYKEGKLGCLVVGSVNCD 121
Query: 186 PSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDR 245
P ++T+EY GLF +GV PKK L RF I P A + PGTPL AAHF+ +++D+ G T+ R
Sbjct: 122 PQMFTREYNGLFAKAGVMPKKLLTRFPIHPCAAIQPGTPLYAAHFKVGDYVDITGKTIYR 181
Query: 246 GFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GFQGVMKRWG+KGMPA+HGVTK+HRR G I SG KARV+PG
Sbjct: 182 GFQGVMKRWGYKGMPASHGVTKTHRRPGNIGSGGEKARVFPG 223
>gi|321468355|gb|EFX79340.1| hypothetical protein DAPPUDRAFT_212601 [Daphnia pulex]
Length = 374
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/286 (43%), Positives = 171/286 (59%), Gaps = 19/286 (6%)
Query: 6 NLRLALSNCNRILSRKSNIFETPFLFGCSEVINIRQKKVWIRPPRVKYP-LWFLQKERAE 64
N +L SN ++ S + F FL +V N+ + K R +P W K +
Sbjct: 12 NPKLLPSNVTQLQSLNRSPFLLGFLSNHEQVRNMSRVKR-----RNTHPGYWLSLKNVQK 66
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQ--PLEITTSSKRTGLIG 122
+ ++ +N F+ EV+ D+ +PLK+ LQ E +KR+G+I
Sbjct: 67 KDDKISADNLRFMREVIQDKYKN----------KSPLKVSELQIEKTEWDPKTKRSGVIA 116
Query: 123 KIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEF-KPNRKPYRGEPKRKLGCLLVGA 181
+ IG+ +W K+G K T++ V+DNH+I+YIPPEE+ K +R + K LGCL+VGA
Sbjct: 117 RNIGRQQMWDKDGNKIVCTVLHVLDNHVIRYIPPEEYVKTSRGAIHFKNKTPLGCLVVGA 176
Query: 182 ESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGL 241
E+ +P +T++YC LF G+ PKK L RFIITP+A LPP TP+TA HF + +DV G
Sbjct: 177 EATNPEKFTRQYCNLFAEVGLMPKKTLSRFIITPNAALPPCTPITAGHFLVGQAVDVYGK 236
Query: 242 TVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
TVD GFQGV+KRWGFKG PA+HG TK HRRGG I +G KARV+PG
Sbjct: 237 TVDHGFQGVVKRWGFKGGPASHGATKFHRRGGTIGTGRDKARVWPG 282
>gi|427789777|gb|JAA60340.1| Putative mitochondrial/chloroplast ribosomal protein l3
[Rhipicephalus pulchellus]
Length = 392
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/246 (46%), Positives = 152/246 (61%), Gaps = 21/246 (8%)
Query: 50 RVKYPL--WFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQ 107
R YP W ++ + +++ N F++EV A K ++ +PL+ EP
Sbjct: 51 RKTYPFHWWAPRRRKVRDQDHILPENYTFLQEV--------AQKKYLQPGESPLREEPWP 102
Query: 108 PLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYR 167
T S+RTG+IG+ IG YP+W G++ TTL+QV+DNH+I Y+PPE++ R +R
Sbjct: 103 VATWTPESRRTGVIGRKIGIYPMWTNTGKRILTTLIQVLDNHVIDYLPPEQYAKTRFGFR 162
Query: 168 GEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTA 227
LGCL+VGA S DP + Y LF+ SGV PKKKL RF++TPDA LPPGTPLTA
Sbjct: 163 AP---GLGCLIVGAGSIDPMNFKAPYLKLFEKSGVMPKKKLTRFLVTPDAALPPGTPLTA 219
Query: 228 AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
AHFRP ++++V G T GFQGVMKRWG KG PATHG TK+HRR G I P
Sbjct: 220 AHFRPGDYVNVYGKTQGHGFQGVMKRWGMKGGPATHGTTKAHRRLGAIGG--------PR 271
Query: 288 GVLQRG 293
G++Q+G
Sbjct: 272 GIIQKG 277
>gi|346466035|gb|AEO32862.1| hypothetical protein [Amblyomma maculatum]
Length = 380
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 113/246 (45%), Positives = 152/246 (61%), Gaps = 21/246 (8%)
Query: 50 RVKYPL--WFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQ 107
R YP W ++ + E++ N F++E+ A K ++ +PL+ EP
Sbjct: 39 RKTYPFHWWAPRRRKVRDQEHILPENYTFLQEL--------AQKKYLQPGESPLREEPWP 90
Query: 108 PLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYR 167
T S+RTG+IG+ IG YP+W G++ TTL+QV+DNH+I YIPPE++ R +R
Sbjct: 91 VATWTPESRRTGVIGRKIGIYPMWTSTGKRLLTTLIQVLDNHVIDYIPPEQYANTRFGHR 150
Query: 168 GEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTA 227
+ + GCL+VGA S DP + Y LF+ SGV PKKKL RF+ITPDA +PPGTPLTA
Sbjct: 151 AKGR---GCLVVGAGSADPMNFKAPYLKLFEKSGVMPKKKLTRFLITPDAAIPPGTPLTA 207
Query: 228 AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
AHFRP ++++V G T GFQGVMKRWG KG PATHG TK+HRR G I P
Sbjct: 208 AHFRPGDYVNVYGKTRGHGFQGVMKRWGMKGGPATHGTTKAHRRLGAIGG--------PR 259
Query: 288 GVLQRG 293
G++ +G
Sbjct: 260 GIIHKG 265
>gi|326505122|dbj|BAK02948.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 403
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/247 (43%), Positives = 149/247 (60%), Gaps = 17/247 (6%)
Query: 37 INIRQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIET 96
IN +QK + + +P ++ + Y ENL+ N++F+++VV D+
Sbjct: 45 INYQQKAFYRK--NFSFPRTWVDRRGGGYDENLSAENQSFLDKVVLDRYAE--------- 93
Query: 97 YNTPLKIEPLQPLEITTSS--KRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYI 154
N+PLK P + + S KR GLI +G P W +G+K T++QV+DNH+I Y+
Sbjct: 94 -NSPLKEAPWKRGQFNNDSVNKRIGLIAVKLGSIPQWTNDGKKVYLTMLQVLDNHVIDYV 152
Query: 155 PPEEF--KPNRKPYRGEPKR-KLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRF 211
PPE K N + K +LG +VGA S DP LYT Y LF+NSGVPPK+KL +F
Sbjct: 153 PPEVIMSKSNNSVLKSRTKEGRLGMAIVGALSSDPRLYTPSYLKLFENSGVPPKRKLTKF 212
Query: 212 IITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRR 271
+ITP+A + PGTPL A+HFR +++DV T+ GFQGVMKRWGFKG P +HG TK HR+
Sbjct: 213 MITPNAAVQPGTPLFASHFRVGDYVDVGAKTIGYGFQGVMKRWGFKGGPRSHGATKFHRK 272
Query: 272 GGCIASG 278
G I SG
Sbjct: 273 RGTIGSG 279
>gi|443689377|gb|ELT91781.1| hypothetical protein CAPTEDRAFT_177551 [Capitella teleta]
Length = 365
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 149/242 (61%), Gaps = 13/242 (5%)
Query: 52 KYPLWFLQK--ERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPL 109
K P WF ++ E + Y LT +N F+ EV+ D+ A KS +PLK P
Sbjct: 35 KAPSWFAKRRVEPSIYRNELTADNAEFVREVILDKY---ADKS------SPLKEAPWPRN 85
Query: 110 EITTS-SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRG 168
E S R GL+ IG P W K+G K T++QV+DNH+I+Y PPE F + Y+
Sbjct: 86 EWQPKRSMRGGLLAIKIGTVPQWTKDGRKFNCTMLQVIDNHVIRYTPPEVFTQSAG-YKS 144
Query: 169 EPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAA 228
+ K G L+VGA S DP L++ +Y GLFK +GVPPK+KL RF+I+P+ + PGTPL+A
Sbjct: 145 KWKGAYGSLVVGALSSDPQLFSAQYLGLFKEAGVPPKRKLTRFLISPECAIQPGTPLSAM 204
Query: 229 HFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGG 288
HF+ +++DV+ T+ GFQGV+KRWGFKG PA+HG TK RR G I SG +RV PG
Sbjct: 205 HFKVGDYVDVQAKTIGHGFQGVVKRWGFKGGPASHGPTKFQRRPGSIGSGRKMSRVMPGK 264
Query: 289 VL 290
L
Sbjct: 265 KL 266
>gi|198477055|ref|XP_002136783.1| GA27952 [Drosophila pseudoobscura pseudoobscura]
gi|198145102|gb|EDY71806.1| GA27952 [Drosophila pseudoobscura pseudoobscura]
Length = 229
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 96/208 (46%), Positives = 137/208 (65%), Gaps = 13/208 (6%)
Query: 43 KVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAV--------KSGI 94
K ++ PR++ P W L+KER + +T NK F+ E+V+D+ G PA+ + I
Sbjct: 27 KGYLSRPRLRNPYWNLRKERTNTEDFVTAENKHFVNELVYDKYGTPALIKSIQAHANNFI 86
Query: 95 ETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYI 154
+TY+ I P P ++R G+I + IGQYPLW+KNG+K RTTL+Q+ DNH+IKY+
Sbjct: 87 QTYDPEDGIRPWSP-----HTRRCGVIARKIGQYPLWLKNGKKVRTTLLQIADNHVIKYM 141
Query: 155 PPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIIT 214
P EE +P + R + GCLLVGAES +PS+ TKEYCG+F+++GV PKK + RF+++
Sbjct: 142 PHEECRPQKNLSRVHNSNQYGCLLVGAESTNPSMLTKEYCGIFRDAGVVPKKNIMRFMVS 201
Query: 215 PDAMLPPGTPLTAAHFRPREFLDVRGLT 242
PD L PGTPL + FR E++DVRG T
Sbjct: 202 PDGALAPGTPLNISRFRVGEYVDVRGKT 229
>gi|290462065|gb|ADD24080.1| 39S ribosomal protein L3, mitochondrial [Lepeophtheirus salmonis]
Length = 351
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 110/245 (44%), Positives = 146/245 (59%), Gaps = 29/245 (11%)
Query: 54 PLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIE--PLQPLEI 111
P W ++K E LT NKA+I + +PLK E P +
Sbjct: 31 PFWQIKKSNQVPNEPLTFENKAWIAGL------------------SPLKEEFAPWERQNW 72
Query: 112 TTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNR-------- 163
SS R+G+I + IG PLW K+G + +TL+QV DNH+++YIP EE+
Sbjct: 73 ERSSIRSGIIAQKIGLAPLWTKSGVRIMSTLLQVKDNHVVRYIPAEEYASTHVGEKIKAP 132
Query: 164 KPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGT 223
K P+ L+VGA+S DPS +TK YCGLF SGV PK+ L RFI++P+A+L PGT
Sbjct: 133 KGITDTPRGLNPVLVVGADSRDPSTFTKGYCGLFNGSGVSPKRILSRFIVSPNAILKPGT 192
Query: 224 PLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATH-GVTKSHRRGGCIASGAGKA 282
PL A+HF+ ++DVRG + RGFQGVMKRWGF GMP+ + G TK+HRR G I SG K+
Sbjct: 193 PLYASHFQVGAYVDVRGTGIRRGFQGVMKRWGFHGMPSDNRGATKTHRRPGSIGSGCQKS 252
Query: 283 RVYPG 287
RV+PG
Sbjct: 253 RVWPG 257
>gi|442758101|gb|JAA71209.1| Putative mitochondrial/chloroplast ribosomal protein l3 [Ixodes
ricinus]
Length = 390
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 151/247 (61%), Gaps = 16/247 (6%)
Query: 50 RVKYPL-WFLQKERAEYIEN-LTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQ 107
R YP W+ + R + E+ L + N F++EV A K ++ +PL+ EP +
Sbjct: 47 RKTYPFHWWAPRRRKHFGEDHLLKENIEFLKEV--------AQKMYLQPGESPLRDEPWE 98
Query: 108 PLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYR 167
T S RTG+I + IG YP+W +G++ TTL+QV+DNH+I+YIP EE+ +R ++
Sbjct: 99 KGVWTPDSVRTGVIARKIGIYPMWTTSGKRILTTLLQVLDNHVIRYIPSEEYASSRFGFK 158
Query: 168 GEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTA 227
+ + GCL+VGA S DP L+ Y LF+ SGV PK+KL RF+IT DA + PGTPL+A
Sbjct: 159 AKGR---GCLVVGAGSADPMLFKAPYLRLFQESGVMPKRKLTRFLITDDAAIQPGTPLSA 215
Query: 228 AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAG---KARV 284
HFR ++++V G T GFQGVMKRW KG P THG TK+HRR G I G K +
Sbjct: 216 GHFRVGDYVNVYGKTRGHGFQGVMKRWKMKGGPKTHGTTKAHRRLGAIGGPRGIILKGKR 275
Query: 285 YPGGVLQ 291
PG + Q
Sbjct: 276 MPGHMGQ 282
>gi|241735550|ref|XP_002413953.1| 60S ribosomal protein L3, putative [Ixodes scapularis]
gi|215507807|gb|EEC17261.1| 60S ribosomal protein L3, putative [Ixodes scapularis]
Length = 390
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/247 (43%), Positives = 152/247 (61%), Gaps = 16/247 (6%)
Query: 50 RVKYPL-WFLQKERAEYIEN-LTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQ 107
R YP W+ ++R + E+ L + N F++EV A K ++ +PL+ EP +
Sbjct: 47 RKTYPFHWWAPRKRKHFGEDHLLKENIEFLKEV--------AQKMYLQPGESPLRNEPWE 98
Query: 108 PLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYR 167
T S RTG+I + IG YP+W +G++ TTL+QV+DNH+I+YIP EE+ +R ++
Sbjct: 99 KGVWTPDSVRTGVIARKIGIYPMWTTSGKRILTTLLQVLDNHVIRYIPSEEYASSRFGFK 158
Query: 168 GEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTA 227
+ + GCL+VGA S DP L+ Y LF+ SGV PK+KL RF+IT DA + PGTPL+A
Sbjct: 159 AKGR---GCLVVGAGSADPMLFKAPYLRLFQESGVMPKRKLTRFLITDDAAIQPGTPLSA 215
Query: 228 AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAG---KARV 284
HFR ++++V G T GFQGVMKRW KG P +HG TK+HRR G I G K +
Sbjct: 216 GHFRAGDYVNVYGKTRGHGFQGVMKRWKMKGGPKSHGTTKAHRRLGAIGGPRGIILKGKR 275
Query: 285 YPGGVLQ 291
PG + Q
Sbjct: 276 MPGHMGQ 282
>gi|391324931|ref|XP_003736995.1| PREDICTED: 39S ribosomal protein L3, mitochondrial-like
[Metaseiulus occidentalis]
Length = 386
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/258 (40%), Positives = 153/258 (59%), Gaps = 18/258 (6%)
Query: 33 CSEVINIRQKKVWIRPPRVK-YPL-WFLQKERAEYIENL-TRNNKAFIEEVVHDQCGAPA 89
C + + IR+K +P R K +P W+ K RA+ E+L T N+ F+++V AP
Sbjct: 28 CVQHLQIREKST--KPKRRKVHPFHWWAPKNRADMSEDLLTEKNQVFLQQVAERIYLAPG 85
Query: 90 VKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNH 149
+PL EP S+RTG+I K IG P+W+K+G++ +++ V + +
Sbjct: 86 --------ESPLNEEPWPIGTYQEGSRRTGIIAKKIGVVPMWLKSGKRVLASMLHVCEQN 137
Query: 150 IIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLC 209
+I Y+ PE + R +RG + GCL+VGAES DP+ + +EY LFK SGV PKKKL
Sbjct: 138 VITYMDPETYARTRFGFRG---KGHGCLIVGAESRDPTRFRQEYLDLFKESGVAPKKKLT 194
Query: 210 RFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSH 269
+F++TP+A L PGTPL A HF+ ++++ G T+DRGF G +RWG KG ATHG TK+H
Sbjct: 195 KFLVTPNAALQPGTPLFAGHFKVGNYVNIYGKTIDRGFLGAKRRWGMKGGRATHGTTKNH 254
Query: 270 RRGGCIASGAGKARVYPG 287
R G A G + R+ G
Sbjct: 255 NRMG--AMGGPRGRILKG 270
>gi|345321943|ref|XP_001514282.2| PREDICTED: 39S ribosomal protein L3, mitochondrial-like
[Ornithorhynchus anatinus]
Length = 331
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 142/242 (58%), Gaps = 23/242 (9%)
Query: 51 VKYPLWFLQK-----ERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP 105
+ PLWF + +R + E+L+ N FI+++ ++ GA + P I+P
Sbjct: 14 ARAPLWFGARCVHNLDRTWWNEHLSEENVQFIKKLTQEEYGAQTASKLCPLKDEPWPIQP 73
Query: 106 LQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKP 165
+P S R GLI +G PLW KNG+K TL+QV D H++KY P
Sbjct: 74 WEP-----GSARVGLIALKLGMMPLWTKNGKKHAVTLLQVQDCHVVKYTP---------- 118
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
E KLG L VG ++ P ++E +++ +GVPPK+++ F +T +A + PGTPL
Sbjct: 119 --SEGAGKLGALTVGGKNASPFYKSEESLEMYREAGVPPKQRIKIFRVTENAKIKPGTPL 176
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
AAHFRP +++DV T+ +GFQGVMKRWGFKG PATHG TK+HRR G I++G ARV+
Sbjct: 177 YAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTG-DIARVW 235
Query: 286 PG 287
PG
Sbjct: 236 PG 237
>gi|256087284|ref|XP_002579802.1| 50S ribosomal protein L3 [Schistosoma mansoni]
gi|238665289|emb|CAZ36041.1| 50S ribosomal protein L3, putative [Schistosoma mansoni]
Length = 394
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 137/243 (56%), Gaps = 23/243 (9%)
Query: 52 KYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEI 111
K P W Q+ E++T NK F+E+ D + + +P+ E +
Sbjct: 39 KKPFWVTQEASPYVDEDVTPENKKFLEQQRLDP---------LSSSKSPIITEQWTQVPW 89
Query: 112 T-TSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKP--------- 161
T ++R GLI +G YPLW K G+K T+ Q+ DNH I+Y PP E
Sbjct: 90 TPYVTQRCGLIAIKLGVYPLWTKTGKKMDCTIFQIPDNHAIRYTPPSEIDKYISLLHPRH 149
Query: 162 ----NRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA 217
N++P +++ G LVGA S DP +T E+CGLFK +G+PPK+K+ RF+++PDA
Sbjct: 150 YWLNNKRPPSWITQKRWGIQLVGAFSADPIEFTSEWCGLFKEAGIPPKRKISRFLVSPDA 209
Query: 218 MLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
L PGTPL+ HFR ++LD+ T++RGF+GV++RWG KG PA HG TK HRR G A
Sbjct: 210 ALKPGTPLSVNHFRVGDYLDITARTINRGFEGVIERWGMKGGPAAHGSTKFHRRMGSAAG 269
Query: 278 GAG 280
G
Sbjct: 270 RGG 272
>gi|339253096|ref|XP_003371771.1| electron transfer flavoprotein, alpha subunit [Trichinella
spiralis]
gi|316967931|gb|EFV52284.1| electron transfer flavoprotein, alpha subunit [Trichinella
spiralis]
Length = 822
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 142/243 (58%), Gaps = 22/243 (9%)
Query: 54 PLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEIT- 112
P W+++KE ++N+T N+ F+ ++ ++ Y+ LK
Sbjct: 119 PPWWIKKEAGYVVDNITEANQKFLRDI------------SLDIYSEKLKERKSSNSTFER 166
Query: 113 ----TSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQ----VVDNHIIKYIPPEEFKPNRK 164
T S RTGL+ + IG P + KNG + TL++ V+DNH+I Y PE++ K
Sbjct: 167 GVWETGSVRTGLVCRKIGVIPQYFKNGTRVLCTLLEAKEKVLDNHVISYTDPEKWYKYSK 226
Query: 165 PYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTP 224
+ E + LG L VG +S DP +T Y G+F+ +GV PK+KL F ITP+A + PGT
Sbjct: 227 IGKKEGLKMLGRLTVGVQSDDPQKFTAAYRGIFEKAGVLPKQKLAAFAITPNAQIQPGTR 286
Query: 225 LTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARV 284
L A HF +++DV G T+D GFQGVM RWGFKGMPATHGVTK+HRR G I + AG+A V
Sbjct: 287 LYANHFTVGQYVDVWGHTIDYGFQGVMVRWGFKGMPATHGVTKTHRRPGSIGT-AGQACV 345
Query: 285 YPG 287
PG
Sbjct: 346 KPG 348
>gi|47212780|emb|CAF95545.1| unnamed protein product [Tetraodon nigroviridis]
Length = 336
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/281 (36%), Positives = 152/281 (54%), Gaps = 40/281 (14%)
Query: 9 LALSNCNRILSRKS-NIFETPF-LFGCSEVINIRQKKVWIRPPRVKYPLWFLQKERAEYI 66
+A C +L R E+PF L GC+ VK WF
Sbjct: 1 MAAWTCRFLLRRGPLRTSESPFGLAGCART--------------VKTTTWFE-------- 38
Query: 67 ENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIG 126
E+LT +N+ ++ + + ++ + PLK EP Q E T S+R GL+ +G
Sbjct: 39 EHLTDDNQEYMRKSMGEE-----YRRQTAEKLCPLKDEPWQRHEWTEGSRRVGLVAVKLG 93
Query: 127 QYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDP 186
P+W K GE+ T++QV D H+IKY+P EE+ + L+VG ++ P
Sbjct: 94 MAPIWTKAGERHVVTMLQVQDCHVIKYLPKEEYDGH-----------TAALVVGGKNASP 142
Query: 187 SLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRG 246
+++ +F+N+GVPPK+K+ F I+ DA++ PGTPL AAHFRP +++DV ++ +G
Sbjct: 143 FYKSEQQMEMFRNAGVPPKQKITTFKISDDALIKPGTPLYAAHFRPGQYVDVTAKSIGKG 202
Query: 247 FQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
FQGVMKRWGFKG PA+HG TK+HRR G G A+V+ G
Sbjct: 203 FQGVMKRWGFKGQPASHGQTKTHRRPGASGPGGDPAKVFKG 243
>gi|410910878|ref|XP_003968917.1| PREDICTED: 39S ribosomal protein L3, mitochondrial-like [Takifugu
rubripes]
Length = 335
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 102/280 (36%), Positives = 149/280 (53%), Gaps = 39/280 (13%)
Query: 9 LALSNCNRILSRKS-NIFETPFLFGCSEVINIRQKKVWIRPPRVKYPLWFLQKERAEYIE 67
+A C +L R E PFL GC VK WF E
Sbjct: 1 MAAWTCRFLLRRGPLRTAERPFLLGCVRT--------------VKTTTWFE--------E 38
Query: 68 NLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQ 127
+LT +N+ ++ + + ++ + I PLK EP Q + T S+R GL+ +G
Sbjct: 39 HLTEDNQEYMRKSLGEE-----YRRQIAEKLCPLKDEPWQRHKWTEGSRRVGLVAVKLGM 93
Query: 128 YPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPS 187
P+W K GE+ T++QV D H+IKY+P EE+ + L+VG ++ P
Sbjct: 94 APIWTKTGERHVVTMLQVQDCHVIKYLPKEEYDGH-----------TAALVVGGKNASPF 142
Query: 188 LYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGF 247
++ ++ N+GVPPK+KL F I+ +A++ PGTPL AAHFRP +++DV ++ +GF
Sbjct: 143 CKSQHQMEMYGNAGVPPKQKLTTFKISDNALIKPGTPLYAAHFRPGQYVDVTAKSIGKGF 202
Query: 248 QGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
QGVMKRWGFKG PA+HG TK+HRR G G A+V+ G
Sbjct: 203 QGVMKRWGFKGQPASHGQTKTHRRPGASGPGGDPAKVFKG 242
>gi|147906354|ref|NP_001088168.1| mitochondrial ribosomal protein L3 [Xenopus laevis]
gi|54035102|gb|AAH84076.1| LOC494992 protein [Xenopus laevis]
Length = 341
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 93/223 (41%), Positives = 132/223 (59%), Gaps = 17/223 (7%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKI 124
+ E+L+ NK F++ + ++ A + PLK EP S R GLI
Sbjct: 44 WDEHLSEENKQFLKHLTAEEYNAQTA-----SKLCPLKDEPWPIKSWEPGSNRVGLIAVK 98
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G P+W K+GEK T++QV D H+IKY P EEF K L VG ++
Sbjct: 99 LGMMPIWTKSGEKHAVTMLQVRDCHVIKYTPKEEFD-----------GKTSSLTVGGKNV 147
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
P ++ +++ +GVPPK+K+ F ++ +A++ PGTPL AAHFRP +F+DV T+
Sbjct: 148 SPFYKSESVMEMYREAGVPPKQKISIFKVSDNAIIKPGTPLYAAHFRPGQFVDVTAKTIG 207
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWG+KG PA+HG TK+HRR G I+SG ARV+PG
Sbjct: 208 KGFQGVMKRWGYKGQPASHGQTKTHRRPGAISSG-DPARVFPG 249
>gi|334348921|ref|XP_001379787.2| PREDICTED: 39S ribosomal protein L3, mitochondrial-like
[Monodelphis domestica]
Length = 490
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/223 (41%), Positives = 132/223 (59%), Gaps = 17/223 (7%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKI 124
+ E+L+ N F++++ ++ A + P I P +P S R GLI
Sbjct: 190 WHEHLSEENYEFLKKLTAEEYKAQTASKLCPLKDEPWPIHPWEP-----GSVRVGLIAAK 244
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K+G+K TL+QV D H++KY P EE NR G L+VG ++
Sbjct: 245 LGMMPLWTKDGKKFVVTLLQVQDCHVLKYTPKEECNRNR-----------GALIVGGKNV 293
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
P ++ +++ GVPPK+K F +T +A++ PGTPL AAHFRP +++DV T+
Sbjct: 294 SPFYKSESLMQMYREVGVPPKQKFSTFRVTDNAIIKPGTPLYAAHFRPGQYVDVTAKTIG 353
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWGFKG PA+HG TK+HRR G IA+G ARV+PG
Sbjct: 354 KGFQGVMKRWGFKGQPASHGQTKTHRRPGAIATG-DIARVWPG 395
>gi|348513093|ref|XP_003444077.1| PREDICTED: 39S ribosomal protein L3, mitochondrial-like
[Oreochromis niloticus]
Length = 341
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 135/223 (60%), Gaps = 16/223 (7%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKI 124
+ ENLT +N+ ++ + + ++ + E N PLK EP E T S+R GL+
Sbjct: 42 FEENLTEDNQEYMRKSMAEEY----RRQTAEKLN-PLKDEPWPRHEWTEGSRRVGLVAMK 96
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G P+W K GE+ T++QV D H+IKY+ EE+ + L+VG ++
Sbjct: 97 LGMVPVWTKTGERHVVTMLQVQDCHVIKYLSKEEYDGHS-----------AALVVGGKNV 145
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
P +++ +F+N+GVPPK+K+ F ++ A++ PGTPL AAHFRP +++DV G ++
Sbjct: 146 SPFHRSEKQMEIFRNAGVPPKQKVTAFKVSDSAIIKPGTPLYAAHFRPGQYVDVTGKSIG 205
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWGFKG PATHG TK+HRR G G A+V+ G
Sbjct: 206 KGFQGVMKRWGFKGQPATHGQTKTHRRPGASGPGGDPAKVFKG 248
>gi|62857890|ref|NP_001016594.1| mitochondrial ribosomal protein L3 [Xenopus (Silurana) tropicalis]
gi|89272068|emb|CAJ81305.1| mitochondrial ribosomal protein L3 [Xenopus (Silurana) tropicalis]
gi|134024406|gb|AAI35276.1| mitochondrial ribosomal protein L3 [Xenopus (Silurana) tropicalis]
Length = 341
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 131/223 (58%), Gaps = 17/223 (7%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKI 124
+ E+L+ NK F++ V ++ A + P +P +P S R G+I
Sbjct: 44 WDEHLSEENKQFLKRVTAEEYHAQTASKLCPLKDEPWPTKPWEP-----GSNRVGVIAVK 98
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G P+W K+G++ T++QV D H++KY P EEF K L VG ++
Sbjct: 99 LGMMPIWTKSGDRHAVTMLQVRDCHVVKYTPKEEFD-----------GKTASLTVGGKNV 147
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
P + L++ +GVPPK+K+ F ++ +A+L PGTPL AAHFRP +F+D+ T+
Sbjct: 148 SPFYKPESAMELYREAGVPPKQKISIFKVSDNAILKPGTPLYAAHFRPGQFVDITAKTIG 207
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWG+KG PA+HG TK+HRR G I+SG ARV+PG
Sbjct: 208 KGFQGVMKRWGYKGQPASHGQTKTHRRPGAISSG-DPARVFPG 249
>gi|395541351|ref|XP_003772608.1| PREDICTED: 39S ribosomal protein L3, mitochondrial, partial
[Sarcophilus harrisii]
Length = 318
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/223 (42%), Positives = 130/223 (58%), Gaps = 17/223 (7%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKI 124
+ E+L+ N F++++ ++ A + P I P +P S R GLI
Sbjct: 18 WHEHLSEENYEFLKQLTAEEYKAQTASKLNPLKDEPWPIHPWEP-----GSVRVGLIAAK 72
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K+G+K TL+QV D HI+KY P EE R G LLVG ++
Sbjct: 73 LGMMPLWTKDGKKHAVTLLQVQDCHILKYTPKEECDGIR-----------GNLLVGGKNV 121
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
++ +++ GVPPK+K F +T +A++ PGTPL AAHFRP +++DV T+
Sbjct: 122 SQFFKSESLMQMYREVGVPPKQKFSLFRVTDNAIIKPGTPLYAAHFRPGQYVDVTAKTIG 181
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWGFKG PATHG TK+HRR G IA+G ARV+PG
Sbjct: 182 KGFQGVMKRWGFKGQPATHGQTKTHRRPGAIATG-DIARVWPG 223
>gi|149018712|gb|EDL77353.1| mitochondrial ribosomal protein L3 (predicted), isoform CRA_b
[Rattus norvegicus]
Length = 304
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 135/230 (58%), Gaps = 21/230 (9%)
Query: 60 KERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKR 117
K + E+L+ N +F++++V D+ K+ + + PLK EP L P E S R
Sbjct: 44 KSSTWWDEHLSEENVSFVKQLVSDEN-----KAQLTSKLNPLKDEPWPLHPWE--PGSSR 96
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
GLI +G PLW K+G+K TL+QV D H++KY P E+ K L
Sbjct: 97 VGLIALKLGMMPLWTKDGQKHAVTLLQVQDCHVLKYTPKEDHN-----------GKTAAL 145
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
VG ++G +++ G+PPK+ + F +T +A++ PGTPL AAHFRP +++D
Sbjct: 146 TVGGKTGSRLYKPNSILEFYRDLGLPPKQTIKIFHVTDNAVIKPGTPLYAAHFRPGQYVD 205
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V T+ +GFQGVMKRWGFKG PA+HG TK+HRR G I++G ARV+PG
Sbjct: 206 VTAKTIGKGFQGVMKRWGFKGQPASHGQTKTHRRPGAISTG-DIARVWPG 254
>gi|157821097|ref|NP_001100322.1| 39S ribosomal protein L3, mitochondrial [Rattus norvegicus]
gi|149018711|gb|EDL77352.1| mitochondrial ribosomal protein L3 (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 348
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 135/230 (58%), Gaps = 21/230 (9%)
Query: 60 KERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKR 117
K + E+L+ N +F++++V D+ K+ + + PLK EP L P E S R
Sbjct: 44 KSSTWWDEHLSEENVSFVKQLVSDEN-----KAQLTSKLNPLKDEPWPLHPWE--PGSSR 96
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
GLI +G PLW K+G+K TL+QV D H++KY P E+ K L
Sbjct: 97 VGLIALKLGMMPLWTKDGQKHAVTLLQVQDCHVLKYTPKEDHN-----------GKTAAL 145
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
VG ++G +++ G+PPK+ + F +T +A++ PGTPL AAHFRP +++D
Sbjct: 146 TVGGKTGSRLYKPNSILEFYRDLGLPPKQTIKIFHVTDNAVIKPGTPLYAAHFRPGQYVD 205
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V T+ +GFQGVMKRWGFKG PA+HG TK+HRR G I++G ARV+PG
Sbjct: 206 VTAKTIGKGFQGVMKRWGFKGQPASHGQTKTHRRPGAISTG-DIARVWPG 254
>gi|281351379|gb|EFB26963.1| hypothetical protein PANDA_011694 [Ailuropoda melanoleuca]
Length = 317
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/225 (41%), Positives = 133/225 (59%), Gaps = 21/225 (9%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKRTGLIG 122
+ E+L+ N AF++++V D+ K+ + + PLK EP L P E S R GLI
Sbjct: 19 WDEHLSEENVAFVKQLVSDEN-----KAQLASKLCPLKDEPWPLHPWE--PGSSRVGLIA 71
Query: 123 KIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAE 182
+G PLW K+G K TL+QV D H++KY P E K+ L VG +
Sbjct: 72 LKLGMMPLWTKDGRKHVVTLLQVQDCHVLKYTPKENHN-----------GKMAALTVGGK 120
Query: 183 SGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLT 242
+ + ++ G+PPK+K+ F +T +A++ PGTPL AAHFRP +++DV T
Sbjct: 121 TASRFHKSTSVLEFYQELGLPPKQKVKIFHVTDNAVIKPGTPLYAAHFRPGQYVDVTAKT 180
Query: 243 VDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +GFQGVMKRWGFKG PATHG TK+HRR G I++G AR++PG
Sbjct: 181 IGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTG-DVARIWPG 224
>gi|301774558|ref|XP_002922699.1| PREDICTED: 39S ribosomal protein L3, mitochondrial-like [Ailuropoda
melanoleuca]
Length = 348
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/225 (41%), Positives = 133/225 (59%), Gaps = 21/225 (9%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKRTGLIG 122
+ E+L+ N AF++++V D+ K+ + + PLK EP L P E S R GLI
Sbjct: 49 WDEHLSEENVAFVKQLVSDEN-----KAQLASKLCPLKDEPWPLHPWE--PGSSRVGLIA 101
Query: 123 KIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAE 182
+G PLW K+G K TL+QV D H++KY P E K+ L VG +
Sbjct: 102 LKLGMMPLWTKDGRKHVVTLLQVQDCHVLKYTPKENHN-----------GKMAALTVGGK 150
Query: 183 SGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLT 242
+ + ++ G+PPK+K+ F +T +A++ PGTPL AAHFRP +++DV T
Sbjct: 151 TASRFHKSTSVLEFYQELGLPPKQKVKIFHVTDNAVIKPGTPLYAAHFRPGQYVDVTAKT 210
Query: 243 VDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +GFQGVMKRWGFKG PATHG TK+HRR G I++G AR++PG
Sbjct: 211 IGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTG-DVARIWPG 254
>gi|426218310|ref|XP_004003392.1| PREDICTED: 39S ribosomal protein L3, mitochondrial [Ovis aries]
Length = 348
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 129/223 (57%), Gaps = 17/223 (7%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKI 124
+ E+L+ N +F++++V D+ A + P I P +P S R GLI
Sbjct: 49 WDEHLSEENVSFVKQLVSDENKAQLASKLCPLKDEPWPIHPWEP-----GSSRVGLIALK 103
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K+G+K TL+QV D H++KY P E K+ L VG ++
Sbjct: 104 LGMMPLWTKDGKKHVVTLLQVQDCHVLKYTPKENHN-----------GKMAALTVGGKTV 152
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
+ ++ G+PPK+K+ F +T +A++ PGTPL AAHFRP +++DV T+
Sbjct: 153 SRFHKSTSILEFYQELGLPPKQKVKMFNVTDNAVIKPGTPLYAAHFRPGQYVDVTAKTIG 212
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWGFKG PATHG TK+HRR G I++G ARV+PG
Sbjct: 213 KGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTG-DVARVWPG 254
>gi|133117|sp|P18665.1|RM03_RAT RecName: Full=39S ribosomal protein L3, mitochondrial; Short=L3mt;
Short=MRP-L3
Length = 347
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 133/230 (57%), Gaps = 21/230 (9%)
Query: 60 KERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKR 117
K + E+L+ N +F++++V D+ K+ + + PLK EP L P E S R
Sbjct: 44 KSSTWWDEHLSEENVSFVKQLVSDEN-----KAQLTSLLNPLKDEPWPLHPWE--PGSSR 96
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
GLI +G PLW K+G+K TL+QV D H++KY P E+ K L
Sbjct: 97 VGLIALKLGMMPLWTKDGQKHAVTLLQVQDCHVLKYTPKEDHN-----------GKTATL 145
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
VG ++G +++ G+PPK+ F +T +A++ GTPL AAHFRP +++D
Sbjct: 146 TVGGKTGSRLYKANSILEFYRDLGLPPKQTTKIFHVTDNAVIKQGTPLYAAHFRPGQYVD 205
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V T+ +GFQGVMKRWGFKG PA+HG TK+HRR G I++G ARV+PG
Sbjct: 206 VTAKTIGKGFQGVMKRWGFKGQPASHGQTKTHRRPGAISTG-DIARVWPG 254
>gi|122692439|ref|NP_001073786.1| 39S ribosomal protein L3, mitochondrial [Bos taurus]
gi|88932613|sp|Q3ZBX6.1|RM03_BOVIN RecName: Full=39S ribosomal protein L3, mitochondrial; Short=L3mt;
Short=MRP-L3
gi|73586745|gb|AAI03048.1| Mitochondrial ribosomal protein L3 [Bos taurus]
gi|296490939|tpg|DAA33052.1| TPA: 39S ribosomal protein L3, mitochondrial [Bos taurus]
Length = 348
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 129/223 (57%), Gaps = 17/223 (7%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKI 124
+ E+L+ N +F++++V D+ A + P I P +P S R GL+
Sbjct: 49 WDEHLSEENVSFVKQLVSDENKAQLASKLCPLKDEPWPIHPWEP-----GSSRVGLVALK 103
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K+G+K TL+QV D H++KY P E K+ L VG ++
Sbjct: 104 LGMMPLWTKDGKKHVVTLLQVQDCHVLKYTPKENHN-----------GKMAALTVGGKTV 152
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
+ ++ G+PPK+K+ F +T +A++ PGTPL AAHFRP +++DV T+
Sbjct: 153 SRFHKSTSILEFYQELGLPPKQKIKMFNVTDNAVIKPGTPLYAAHFRPGQYVDVTAKTIG 212
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWGFKG PATHG TK+HRR G I++G ARV+PG
Sbjct: 213 KGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTG-DVARVWPG 254
>gi|351695215|gb|EHA98133.1| 39S ribosomal protein L3, mitochondrial [Heterocephalus glaber]
Length = 347
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/259 (37%), Positives = 139/259 (53%), Gaps = 28/259 (10%)
Query: 32 GCSEVINIR-QKKVW--IRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAP 88
GC R +W +R K P W + E+L+ N +F++++V D+ A
Sbjct: 20 GCGAAPGSRCSTNIWLFVRSLHGKSPTW--------WDEHLSEENVSFVKQLVSDEDKAQ 71
Query: 89 AVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDN 148
+ P I P +P S R GLI +G PLW K+GEK TL+QV D
Sbjct: 72 LASKLCPLKDEPWPIHPWEP-----GSSRVGLIALKLGMMPLWTKDGEKHAVTLLQVQDC 126
Query: 149 HIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKL 208
H++KY E K+ L VG ++ ++ ++ G+PPK+K+
Sbjct: 127 HVLKYTSKENHN-----------GKMAALTVGGKTVSRFRKSESTLEFYRELGLPPKEKV 175
Query: 209 CRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKS 268
F +T +A++ PGTPL AAHFRP +++DV T+ +GFQGVMKRWGFKG PA+HG TK+
Sbjct: 176 KTFHVTDNAVIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPASHGQTKT 235
Query: 269 HRRGGCIASGAGKARVYPG 287
HRR G IA+G ARV+PG
Sbjct: 236 HRRPGAIATG-DIARVWPG 253
>gi|354470916|ref|XP_003497690.1| PREDICTED: 39S ribosomal protein L3, mitochondrial-like [Cricetulus
griseus]
Length = 415
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 137/240 (57%), Gaps = 26/240 (10%)
Query: 55 LWFL-----QKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQ 107
+WF K + E+L+ N +F++++V D+ K+ + + PLK EP L
Sbjct: 101 IWFFVRNQHSKSSTWWDEHLSEENVSFVKQLVQDE-----NKAQLSSKLNPLKDEPWPLH 155
Query: 108 PLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYR 167
P E S R GLI +G PLW K+G+K TL+QV D H++KY P E+ Y
Sbjct: 156 PWE--PGSSRVGLIALKLGMMPLWTKDGQKHVATLLQVQDCHVLKYTPKED-------YN 206
Query: 168 GEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTA 227
G K L VG ++ ++ G+PPK+ + F +T +A++ PGTPL A
Sbjct: 207 G----KTSALTVGGKTVSRFYKPDSILEFYRELGLPPKQTIKIFHVTDNAVIKPGTPLYA 262
Query: 228 AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
AHFRP +++DV T+ +GFQGVMKRWGFKG PATHG TK+HRR G I++G ARV PG
Sbjct: 263 AHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTG-DVARVRPG 321
>gi|440912323|gb|ELR61905.1| 39S ribosomal protein L3, mitochondrial [Bos grunniens mutus]
Length = 378
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 130/228 (57%), Gaps = 17/228 (7%)
Query: 60 KERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTG 119
K + E+L+ N +F++++V D+ A + P I P +P S R G
Sbjct: 74 KSGTWWDEHLSEENVSFVKQLVSDENKAQLASKLCPLKDEPWPIHPWEP-----GSSRVG 128
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
L+ +G PLW K+G+K TL+QV D H++KY P E K+ L V
Sbjct: 129 LVALKLGMMPLWTKDGKKHVVTLLQVQDCHVLKYTPKENHN-----------GKMAALTV 177
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
G ++ + ++ G+PPK+K+ F +T +A++ PGTPL AAHFRP +++DV
Sbjct: 178 GGKTVSRFHKSTSILEFYQELGLPPKQKIKMFNVTDNAVIKPGTPLYAAHFRPGQYVDVT 237
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
T+ +GFQGVMKRWGFKG PATHG TK+HRR G I++G ARV+PG
Sbjct: 238 AKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTG-DVARVWPG 284
>gi|225716532|gb|ACO14112.1| Mitochondrial 39S ribosomal protein L3 [Esox lucius]
Length = 341
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 130/221 (58%), Gaps = 16/221 (7%)
Query: 67 ENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIG 126
E+LT +NK+++ + + ++ I PLK EP E T S+R GL+ +G
Sbjct: 46 EHLTEDNKSYMRKSLGEE-----YNQQIAAKFCPLKDEPWPRHEWTKGSRRVGLVAVKLG 100
Query: 127 QYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDP 186
P+W K G++ TL+QV D H++KY+ EE+ + LLVG ++
Sbjct: 101 MAPVWTKMGDRQVVTLLQVQDCHVLKYLSKEEYDGH-----------TAALLVGGKNASS 149
Query: 187 SLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRG 246
++E +F+ +GVPPK+K+ F ++ +A++ PGTPL AAHFRP +++DV T+ G
Sbjct: 150 FYKSQEEMEMFRFAGVPPKQKISTFKVSDNAIIKPGTPLYAAHFRPGQYVDVTAKTIGMG 209
Query: 247 FQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
FQGVMKR+GFKG PATHG TK+HRR G G A+V+ G
Sbjct: 210 FQGVMKRYGFKGQPATHGQTKTHRRPGASGPGGDPAKVFKG 250
>gi|225710684|gb|ACO11188.1| Mitochondrial 39S ribosomal protein L3 [Caligus rogercresseyi]
Length = 342
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 130/221 (58%), Gaps = 16/221 (7%)
Query: 67 ENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIG 126
E+LT +NK+++ + + ++ I PLK EP E T S+R GL+ +G
Sbjct: 46 EHLTEDNKSYMRKSLGEE-----YNRQIAAKLHPLKDEPWPRQEWTKESRRVGLVAVKLG 100
Query: 127 QYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDP 186
P+W K GE+ T++QV D H++ Y+ E++ + L+VG ++ P
Sbjct: 101 MAPVWTKTGERHVVTMLQVQDCHVLNYLSKEKYDGH-----------TAALVVGGKNASP 149
Query: 187 SLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRG 246
T E +F+ +GVPPK+K+ F ++ +A++ PGTPL AAHFRP +++DV T+ +G
Sbjct: 150 FYKTDEEMEMFRLAGVPPKQKVTTFKVSDNAIIKPGTPLYAAHFRPGQYVDVTAKTIGKG 209
Query: 247 FQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
FQGVMKR+GFKG PA+HG TK+HRR G G A+V+ G
Sbjct: 210 FQGVMKRYGFKGQPASHGQTKTHRRPGASGPGGDPAKVFKG 250
>gi|221220576|gb|ACM08949.1| Mitochondrial 39S ribosomal protein L3 [Salmo salar]
Length = 342
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 130/221 (58%), Gaps = 16/221 (7%)
Query: 67 ENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIG 126
E+LT +NK+++ + + ++ I PLK EP E T S+R GL+ +G
Sbjct: 46 EHLTEDNKSYMRKSLGEE-----YNRQIAAKLHPLKDEPWPRQEWTKESRRVGLVAVKLG 100
Query: 127 QYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDP 186
P+W K GE+ T++QV D H++ Y+ E++ + L+VG ++ P
Sbjct: 101 MAPVWTKTGERHVVTMLQVQDCHVLNYLSKEKYDGH-----------TAALVVGGKNASP 149
Query: 187 SLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRG 246
T E +F+ +GVPPK+K+ F ++ +A++ PGTPL AAHFRP +++DV T+ +G
Sbjct: 150 FYKTDEEMEMFRLAGVPPKQKVTTFKVSDNAIIKPGTPLYAAHFRPGQYVDVTAKTIGKG 209
Query: 247 FQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
FQGVMKR+GFKG PA+HG TK+HRR G G A+V+ G
Sbjct: 210 FQGVMKRYGFKGQPASHGQTKTHRRPGASGPGGDPAKVFKG 250
>gi|355704330|gb|AES02191.1| mitochondrial ribosomal protein L3 [Mustela putorius furo]
Length = 366
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 136/240 (56%), Gaps = 26/240 (10%)
Query: 55 LWFLQ-----KERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQ 107
+W L K + E+L+ N F++++V D+ K+ + + PLK EP L
Sbjct: 52 IWLLARSLHGKSGTWWDEHLSEENVPFVKQLVSDEN-----KAQLASKLCPLKDEPWPLH 106
Query: 108 PLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYR 167
P E S R GLI +G PLW K+G+K TL+QV D H++KY P E R
Sbjct: 107 PWE--PGSSRVGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTPKENHNGKR---- 160
Query: 168 GEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTA 227
L VG ++ + ++ G+PPK+K+ F +T +A++ PGTPL A
Sbjct: 161 -------AALTVGGKTVSRFHKSTSVLEFYQELGLPPKQKVKIFHVTDNAVIKPGTPLYA 213
Query: 228 AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
AHFRP +++DV T+ +GFQGVMKRWGFKG PATHG TK+HRR G I++G ARV+PG
Sbjct: 214 AHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTG-DVARVWPG 272
>gi|149729728|ref|XP_001497211.1| PREDICTED: 39S ribosomal protein L3, mitochondrial [Equus caballus]
Length = 348
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 129/223 (57%), Gaps = 17/223 (7%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKI 124
+ E+L+ N F++++V D+ K+ + + PLK EP S R GLI
Sbjct: 49 WDEHLSEENVPFVKQLVSDED-----KAQLASKMCPLKDEPWPTHPWEPGSARVGLIALK 103
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K+G+K TL+QV D H++KY P E R L VG ++
Sbjct: 104 LGMMPLWTKDGQKHVATLLQVQDCHVLKYTPKENHNGKR-----------AALTVGGKTV 152
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
+ ++ G+PPK+K+ F +T +A++ PGTPL AAHFRP +++DV T+
Sbjct: 153 SRFRKSTSILEFYQELGLPPKQKVKIFHVTDNAVIKPGTPLYAAHFRPGQYVDVTAKTIG 212
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWGFKG PATHG TK+HRR G I++G ARV+PG
Sbjct: 213 KGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTG-DVARVWPG 254
>gi|296228096|ref|XP_002759663.1| PREDICTED: 39S ribosomal protein L3, mitochondrial isoform 2
[Callithrix jacchus]
Length = 348
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 128/223 (57%), Gaps = 17/223 (7%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKI 124
+ E+L+ N FI+++V D+ A + P I P +P S R GL+
Sbjct: 49 WDEHLSEENVPFIKQLVSDEDKAQLASKLCPLKDEPWPIHPWEP-----GSSRVGLVAVK 103
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K+G++ TL+QV D H++KYI E K+ L VG ++
Sbjct: 104 LGMMPLWTKDGQRHVVTLLQVRDCHVLKYISKENHD-----------GKMAALSVGGKTV 152
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
+ + ++ G+PPK+K+ F IT +A L PGTPL AAHFRP +++DV T+
Sbjct: 153 SRFHKSTQILEFYRELGLPPKQKVKIFRITDNAALKPGTPLYAAHFRPGQYVDVTAKTIG 212
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWGFKG PATHG TK+HRR G I++G ARV+PG
Sbjct: 213 KGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTG-DVARVWPG 254
>gi|296228094|ref|XP_002759662.1| PREDICTED: 39S ribosomal protein L3, mitochondrial isoform 1
[Callithrix jacchus]
Length = 376
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 128/223 (57%), Gaps = 17/223 (7%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKI 124
+ E+L+ N FI+++V D+ A + P I P +P S R GL+
Sbjct: 77 WDEHLSEENVPFIKQLVSDEDKAQLASKLCPLKDEPWPIHPWEP-----GSSRVGLVAVK 131
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K+G++ TL+QV D H++KYI E K+ L VG ++
Sbjct: 132 LGMMPLWTKDGQRHVVTLLQVRDCHVLKYISKENHD-----------GKMAALSVGGKTV 180
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
+ + ++ G+PPK+K+ F IT +A L PGTPL AAHFRP +++DV T+
Sbjct: 181 SRFHKSTQILEFYRELGLPPKQKVKIFRITDNAALKPGTPLYAAHFRPGQYVDVTAKTIG 240
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWGFKG PATHG TK+HRR G I++G ARV+PG
Sbjct: 241 KGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTGD-VARVWPG 282
>gi|225706142|gb|ACO08917.1| Mitochondrial 39S ribosomal protein L3 [Osmerus mordax]
Length = 345
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 136/223 (60%), Gaps = 16/223 (7%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKI 124
+ E+LT +N++++ + + ++ ++ + + PLK EP E T S+R GL+
Sbjct: 46 WDEHLTEDNQSYMRKSLGEEFNK---QTAAKLH--PLKDEPWPRQEWTDGSRRVGLVAVK 100
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G P+W K+GE+ T++QV D H++K++ EE+ + L+VG +
Sbjct: 101 LGMAPVWTKSGERHVVTMLQVQDCHVLKHLTKEEYDGH-----------TAALVVGGRNA 149
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
P T+E +F+ +GVPPK+K+ F ++ +A++ PGTPL AAHFRP +++DV T+
Sbjct: 150 SPFYKTEENMEMFRIAGVPPKQKVTTFKVSDNAIIKPGTPLHAAHFRPGQYVDVTAKTIG 209
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKR+GFKG PA+HG TK+HRR G G A+V+ G
Sbjct: 210 KGFQGVMKRYGFKGQPASHGQTKTHRRPGASGPGGDPAKVFKG 252
>gi|410971432|ref|XP_003992173.1| PREDICTED: 39S ribosomal protein L3, mitochondrial isoform 1 [Felis
catus]
Length = 348
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 134/225 (59%), Gaps = 21/225 (9%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKRTGLIG 122
+ E+L+ N +F++++V ++ K+ + + PLK EP L P E S R GLI
Sbjct: 49 WDEHLSEENVSFVKQLVSEEN-----KAQLASKLCPLKDEPWPLHPWE--PGSSRVGLIA 101
Query: 123 KIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAE 182
+G PLW K+G+K TL+QV D H++KY P E K+ L VG +
Sbjct: 102 LKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTPKENHD-----------GKMAALTVGGK 150
Query: 183 SGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLT 242
+ + ++ G+PPK+K+ F +T +A++ PGTPL AAHFRP +++DV T
Sbjct: 151 TVSRFYKSPSLLEFYQELGLPPKQKVKIFRVTDNAVIKPGTPLYAAHFRPGQYVDVTAKT 210
Query: 243 VDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +GFQGVMKRWGFKG PATHG TK+HRR G +++G ARV+PG
Sbjct: 211 IGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVSTG-DVARVWPG 254
>gi|431916986|gb|ELK16742.1| 39S ribosomal protein L3, mitochondrial [Pteropus alecto]
Length = 349
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 127/223 (56%), Gaps = 17/223 (7%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKI 124
+ E+L+ N F++++ D+ A + P I P +P S R GL+
Sbjct: 50 WDEHLSEENVTFVKQLASDENKAQLASKLCPLKDEPWPIHPWEP-----GSSRVGLVAVK 104
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K+G+K TL+QV D H++KY P E K+ L VG ++
Sbjct: 105 LGMMPLWTKDGKKHVVTLLQVQDCHVLKYTPKEN-----------NNGKMAALTVGGKTV 153
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
+ ++ G+PPK+K+ F IT +A++ PGTPL AAHFRP +++DV T+
Sbjct: 154 SRFHKSASILEFYQELGLPPKQKVKIFHITDNAVIKPGTPLYAAHFRPGQYVDVTAKTIG 213
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWGFKG PATHG TK+HRR G I++G ARV+PG
Sbjct: 214 KGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTG-DVARVWPG 255
>gi|311268535|ref|XP_001925073.2| PREDICTED: 39S ribosomal protein L3, mitochondrial [Sus scrofa]
Length = 399
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 128/223 (57%), Gaps = 17/223 (7%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKI 124
+ E+L+ N F++++V D+ A + P I P +P S R GLI
Sbjct: 100 WDEHLSEENVPFVKQLVSDENKAQLASKLCPLKDEPWPIHPWEP-----GSSRVGLIALK 154
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K+G+K TL+QV D H++KY P E ++ L VG ++
Sbjct: 155 LGMMPLWTKDGQKHVVTLLQVQDCHVLKYTPKENHN-----------GRMAALTVGGKTV 203
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
+ ++ G+PPK+K+ F +T +A++ PGTPL AAHFRP +++DV T+
Sbjct: 204 SHFHKSASILEFYQELGLPPKQKVKIFNVTENAVIKPGTPLYAAHFRPGQYVDVTAKTIG 263
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVM+RWGFKG PATHG TK+HRR G I++G ARV+PG
Sbjct: 264 KGFQGVMRRWGFKGQPATHGQTKTHRRPGAISTG-DVARVWPG 305
>gi|359322601|ref|XP_003639871.1| PREDICTED: 39S ribosomal protein L3, mitochondrial-like [Canis
lupus familiaris]
Length = 348
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 132/225 (58%), Gaps = 21/225 (9%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKRTGLIG 122
+ E+L+ N F++++ D+ K+ + + PLK EP L P E S R GLI
Sbjct: 49 WDEHLSEENVTFVKQLASDEN-----KAQLASKLCPLKDEPWPLHPWE--PGSSRVGLIA 101
Query: 123 KIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAE 182
+G PLW K+G++ TL+QV D H++KY P E K+ L VG +
Sbjct: 102 LKLGMMPLWTKDGKRHVVTLLQVQDCHVLKYTPKENHN-----------GKMAALTVGGK 150
Query: 183 SGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLT 242
+ + ++ G+PPK+K+ F +T +A++ PGTPL AAHFRP +++DV T
Sbjct: 151 TVSRFHKSTSVLEFYQELGLPPKQKVKIFHVTDNAVIKPGTPLYAAHFRPGQYVDVTAKT 210
Query: 243 VDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +GFQGVMKRWGFKG PATHG TK+HRR G I++G ARV+PG
Sbjct: 211 IGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTG-DVARVWPG 254
>gi|403265859|ref|XP_003925129.1| PREDICTED: 39S ribosomal protein L3, mitochondrial isoform 1
[Saimiri boliviensis boliviensis]
Length = 348
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 129/223 (57%), Gaps = 17/223 (7%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKI 124
+ E+L+ N FI+++V D+ K+ + + PLK EP S R GL+
Sbjct: 49 WDEHLSEENVPFIKQLVSDED-----KAQLASKLCPLKDEPWPIRPWEQGSARVGLVAVK 103
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K+G++ TL+QV D H++KYI E+ K+ L VG ++
Sbjct: 104 LGMMPLWTKDGQRHVVTLLQVQDCHVLKYISKEDHD-----------GKMAALSVGGKTV 152
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
++ G+PPK+K+ F IT +A L PGTPL AAHFRP +++DV T+
Sbjct: 153 SRFRKPTHILEFYQELGLPPKQKVKIFRITENAALKPGTPLYAAHFRPGQYVDVTAKTIG 212
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWGFKG PATHG TK+HRR G I++G ARV+PG
Sbjct: 213 KGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTG-DVARVWPG 254
>gi|348582013|ref|XP_003476771.1| PREDICTED: 39S ribosomal protein L3, mitochondrial-like [Cavia
porcellus]
Length = 348
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/275 (35%), Positives = 146/275 (53%), Gaps = 28/275 (10%)
Query: 16 RILSRKSNIFETPFLFGCSEVINIRQK-KVW--IRPPRVKYPLWFLQKERAEYIENLTRN 72
R+L++ F G + +R + +W +R K P W + E+L+
Sbjct: 5 RLLAQAGAQFLGCSTGGLAAAPGLRSRTNIWLFVRSLHDKSPTW--------WDEHLSEE 56
Query: 73 NKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWM 132
N +F++++V D+ A + P I P +P S R GLI +G PLW
Sbjct: 57 NTSFVKKLVSDEDKAQLASKLCPLKDEPWPINPWEP-----GSSRVGLIALKLGMMPLWT 111
Query: 133 KNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKE 192
K+G+K TL+QV D H++KY E K+ L VG ++ ++
Sbjct: 112 KDGQKHAVTLLQVQDCHVLKYTSKENHN-----------GKMAALTVGGKTVSRFRKSES 160
Query: 193 YCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMK 252
++ G+PPK+ + F +T +A++ PGTPL AAHFRP +++DV T+ +GFQGVMK
Sbjct: 161 VLEFYRELGLPPKQTVKIFHVTDNAVIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMK 220
Query: 253 RWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
RWGFKG PA+HG TK+HRR G I++G ARV+PG
Sbjct: 221 RWGFKGQPASHGQTKTHRRPGAISTG-DIARVWPG 254
>gi|15029810|gb|AAH11128.1| Mitochondrial ribosomal protein L3 [Mus musculus]
Length = 348
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 134/230 (58%), Gaps = 21/230 (9%)
Query: 60 KERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKR 117
K + E+L+ N +F++++V D+ K+ + + PLK EP L P E S R
Sbjct: 44 KSSTWWDEHLSEENLSFVKQLVSDEN-----KTQLTSKLNPLKDEPWPLHPWE--PGSFR 96
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
GLI +G PLW K+G+K TL+QV D H++KY P E+ K+ L
Sbjct: 97 VGLIALKLGMMPLWTKDGQKHAVTLLQVQDCHVLKYTPKEDHN-----------GKIAAL 145
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
VG ++ +++ G+PPK+ F +T +A++ PGTPL AAHFRP +++D
Sbjct: 146 TVGGKTVSRFYKPDSRLEFYRDLGLPPKQIHKIFHVTDNAVIKPGTPLYAAHFRPGQYVD 205
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V T+ +GFQGVMKRWGFKG PA+HG TK+HRR G I++G ARV+PG
Sbjct: 206 VTAKTIGKGFQGVMKRWGFKGQPASHGQTKTHRRPGAISTG-DIARVWPG 254
>gi|31981470|ref|NP_444389.2| 39S ribosomal protein L3, mitochondrial [Mus musculus]
gi|17865553|sp|Q99N95.1|RM03_MOUSE RecName: Full=39S ribosomal protein L3, mitochondrial; Short=L3mt;
Short=MRP-L3
gi|13559357|dbj|BAB40838.1| mitochondrial ribosomal protein L3 (L3mt) [Mus musculus]
gi|22028310|gb|AAH34877.1| Mitochondrial ribosomal protein L3 [Mus musculus]
gi|26346775|dbj|BAC37036.1| unnamed protein product [Mus musculus]
gi|74141933|dbj|BAE41032.1| unnamed protein product [Mus musculus]
gi|74216950|dbj|BAE26589.1| unnamed protein product [Mus musculus]
gi|148689151|gb|EDL21098.1| mitochondrial ribosomal protein L3, isoform CRA_c [Mus musculus]
Length = 348
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 134/230 (58%), Gaps = 21/230 (9%)
Query: 60 KERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKR 117
K + E+L+ N +F++++V D+ K+ + + PLK EP L P E S R
Sbjct: 44 KSSTWWDEHLSEENLSFVKQLVSDEN-----KTQLTSKLNPLKDEPWPLHPWE--PGSFR 96
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
GLI +G PLW K+G+K TL+QV D H++KY P E+ K+ L
Sbjct: 97 VGLIALKLGMMPLWTKDGQKHAVTLLQVQDCHVLKYTPKEDHN-----------GKIAAL 145
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
VG ++ +++ G+PPK+ F +T +A++ PGTPL AAHFRP +++D
Sbjct: 146 TVGGKTVSRFYKPDSRLEFYRDLGLPPKQIHKIFHVTDNAVIKPGTPLYAAHFRPGQYVD 205
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V T+ +GFQGVMKRWGFKG PA+HG TK+HRR G I++G ARV+PG
Sbjct: 206 VTAKTIGKGFQGVMKRWGFKGQPASHGQTKTHRRPGAISTG-DIARVWPG 254
>gi|291411673|ref|XP_002722112.1| PREDICTED: 39S ribosomal protein L3, mitochondrial-like
[Oryctolagus cuniculus]
Length = 348
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 132/225 (58%), Gaps = 21/225 (9%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKRTGLIG 122
+ E+L+ N F++++V D+ K+ + + +PLK EP L P E S R GLI
Sbjct: 49 WDEHLSEENVPFVKQLVSDED-----KAQLASKLSPLKDEPWPLHPWE--PGSSRVGLIA 101
Query: 123 KIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAE 182
+G PLW K+G + TL+QV D H++KY E K+ L VG +
Sbjct: 102 LKLGMMPLWTKDGHRHVVTLLQVQDCHVLKYTSKENHN-----------GKMAALTVGGK 150
Query: 183 SGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLT 242
+ + ++ G+PPK+K+ F +T +A++ PGTPL AAHFRP +++DV T
Sbjct: 151 TVSRFRKSTSVLEFYQELGLPPKQKVKIFHVTDNAVIKPGTPLYAAHFRPGQYVDVTART 210
Query: 243 VDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +GFQGVMKRWGFKG PATHG TK+HRR G I++G ARV+PG
Sbjct: 211 IGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTG-DVARVWPG 254
>gi|148689149|gb|EDL21096.1| mitochondrial ribosomal protein L3, isoform CRA_a [Mus musculus]
Length = 304
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 134/230 (58%), Gaps = 21/230 (9%)
Query: 60 KERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKR 117
K + E+L+ N +F++++V D+ K+ + + PLK EP L P E S R
Sbjct: 44 KSSTWWDEHLSEENLSFVKQLVSDEN-----KTQLTSKLNPLKDEPWPLHPWE--PGSFR 96
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
GLI +G PLW K+G+K TL+QV D H++KY P E+ K+ L
Sbjct: 97 VGLIALKLGMMPLWTKDGQKHAVTLLQVQDCHVLKYTPKEDHNG-----------KIAAL 145
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
VG ++ +++ G+PPK+ F +T +A++ PGTPL AAHFRP +++D
Sbjct: 146 TVGGKTVSRFYKPDSRLEFYRDLGLPPKQIHKIFHVTDNAVIKPGTPLYAAHFRPGQYVD 205
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V T+ +GFQGVMKRWGFKG PA+HG TK+HRR G I++G ARV+PG
Sbjct: 206 VTAKTIGKGFQGVMKRWGFKGQPASHGQTKTHRRPGAISTGD-IARVWPG 254
>gi|395816522|ref|XP_003781750.1| PREDICTED: 39S ribosomal protein L3, mitochondrial-like isoform 1
[Otolemur garnettii]
Length = 348
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 127/228 (55%), Gaps = 17/228 (7%)
Query: 60 KERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTG 119
K + E+L+ N FI+++V D+ A + P I P +P S R G
Sbjct: 44 KSATWWDEHLSEENVPFIKQLVSDEDKAQLASKLCPLKDEPWPIHPWEP-----GSSRVG 98
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
LI +G PLW K+G+K TL+QV D H++KY E K+ L V
Sbjct: 99 LIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKESHN-----------GKMAALHV 147
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
G ++ ++ G+PPK+K+ F +T +A++ PGTPL AAHFRP +++DV
Sbjct: 148 GGKTVSRFHKPPSSLEFYRELGLPPKQKVKIFHVTDNAIIKPGTPLYAAHFRPGQYVDVT 207
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
T+ +GFQGVMKRWGFKG PATHG TK+HRR G IA+G ARV+PG
Sbjct: 208 AKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAIATG-DIARVWPG 254
>gi|417399366|gb|JAA46703.1| Putative 39s ribosomal protein l3 mitochondrial [Desmodus rotundus]
Length = 348
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 126/223 (56%), Gaps = 17/223 (7%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKI 124
+ E+L+ N F++++V D+ A + P I P +P S R GL+
Sbjct: 49 WDEHLSEENVPFVKQLVSDEDKAQLASKLCPLKDEPWPIHPWKP-----GSARVGLVALK 103
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K+G+K TL+QV D H++KY P E K L VG ++
Sbjct: 104 LGMMPLWTKDGQKHVATLLQVQDCHVLKYTPKEN-----------NDGKKATLTVGGKTV 152
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
+ ++ G+PPK+K+ F IT +A + PGTPL AAHFRP +++DV T+
Sbjct: 153 SRFYKSTSKLEFYQELGLPPKQKIKIFRITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIG 212
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWGFKG PATHG TK+HRR G +++G ARV+PG
Sbjct: 213 KGFQGVMKRWGFKGQPATHGQTKTHRRPGAVSTG-DVARVWPG 254
>gi|417399364|gb|JAA46702.1| Putative 39s ribosomal protein l3 mitochondrial [Desmodus rotundus]
Length = 348
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 126/223 (56%), Gaps = 17/223 (7%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKI 124
+ E+L+ N F++++V D+ A + P I P +P S R GL+
Sbjct: 49 WDEHLSEENVPFVKQLVSDEDKAQLASKLCPLKDEPWPIHPWKP-----GSARVGLVALK 103
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K+G+K TL+QV D H++KY P E K L VG ++
Sbjct: 104 LGMMPLWTKDGQKHVATLLQVQDCHVLKYTPKEN-----------NDGKKATLTVGGKTV 152
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
+ ++ G+PPK+K+ F IT +A + PGTPL AAHFRP +++DV T+
Sbjct: 153 SRFYKSTPKLEFYQELGLPPKQKIKIFRITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIG 212
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWGFKG PATHG TK+HRR G +++G ARV+PG
Sbjct: 213 KGFQGVMKRWGFKGQPATHGQTKTHRRPGAVSTG-DVARVWPG 254
>gi|387017102|gb|AFJ50669.1| 39S ribosomal protein L3, mitochondrial-like [Crotalus adamanteus]
Length = 354
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 132/225 (58%), Gaps = 21/225 (9%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKRTGLIG 122
+ E+L+ N F++++ ++ K+ I + PLK EP L P E SKR GLI
Sbjct: 55 WDEHLSEENVEFLKKLSTEE-----YKAQIASKLCPLKDEPWPLHPWE--PGSKRVGLIA 107
Query: 123 KIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAE 182
+G PLW K GEK T++QV D H++KY P EE K L VG +
Sbjct: 108 VKLGMMPLWTKQGEKIPVTMLQVQDCHVLKYTPKEE-----------SDGKTPSLTVGGK 156
Query: 183 SGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLT 242
+ + L++ G+PPK+K+ F ++ +A++ PGTPL AAHFRP +++D+ T
Sbjct: 157 NVSEFHRSSSVMELYRELGLPPKQKISVFRVSSNAVIKPGTPLYAAHFRPGQYVDITAKT 216
Query: 243 VDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +GFQGVMKRWGF G PATHG TKSHRR G I+S +G ++V+ G
Sbjct: 217 IGKGFQGVMKRWGFSGQPATHGQTKSHRRPGSISS-SGVSKVFKG 260
>gi|56753667|gb|AAW25036.1| SJCHGC01793 protein [Schistosoma japonicum]
Length = 391
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 127/244 (52%), Gaps = 27/244 (11%)
Query: 52 KYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNT-PLKIEPLQPLE 110
K P W Q+ E++T NK F+E + IE T P+ E +
Sbjct: 39 KKPFWVTQEANPYADEDITPENKEFLE------------RQRIEALTTSPIITEQWTQVP 86
Query: 111 IT-TSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKP-------- 161
T ++R GLI +G YPLW K GEK T+ QV DNH ++Y PP E
Sbjct: 87 WTPYVTQRCGLIAIKLGVYPLWTKTGEKMDCTVFQVPDNHALRYTPPSEIDKYISLLHPR 146
Query: 162 -----NRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD 216
+++P +++ G LVGA S D K +GVPPK+K+ RF+++PD
Sbjct: 147 HYWLNSKRPPSWITQKRWGIQLVGAFSADLLNSLLNGVAYLKEAGVPPKRKISRFLVSPD 206
Query: 217 AMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIA 276
A L PGTPL+ HFR ++LD+ T++RGFQGV++RWG KG PA HG TK HRR G A
Sbjct: 207 AALKPGTPLSVHHFRVGDYLDITARTINRGFQGVIERWGMKGGPAAHGSTKFHRRMGSAA 266
Query: 277 SGAG 280
G
Sbjct: 267 GCGG 270
>gi|332818101|ref|XP_003310089.1| PREDICTED: 39S ribosomal protein L3, mitochondrial [Pan
troglodytes]
Length = 375
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 145/289 (50%), Gaps = 29/289 (10%)
Query: 3 LNHNLRLALSNCNRILSRKSNIFETPFLFGCSEVINIRQKK--VW--IRPPRVKYPLWFL 58
L L AL NR+ + N+ G E + +K+ +W +R K W
Sbjct: 18 LGDGLGAALGQGNRVTTNSLNVSLIRRNVGSEEKVGDLKKRTHIWLFVRGLHGKSGTW-- 75
Query: 59 QKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRT 118
+ E+L+ N FI+++V D+ A + P I P +P S R
Sbjct: 76 ------WDEHLSEENVPFIKQLVSDEDKAQLASKLCPLKDEPWPIHPWEP-----GSFRV 124
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLI +G PLW K+G+K TL+QV D H++KY E K+ L
Sbjct: 125 GLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCN-----------GKMATLS 173
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
VG ++ ++ G+PPK+ + F IT +A + PGTPL AAHFRP +++DV
Sbjct: 174 VGGKTVSRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDV 233
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
T+ +GFQGVMKRWGFKG PATHG TK+HRR G +A+G RV+PG
Sbjct: 234 TAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATGD-IGRVWPG 281
>gi|397518672|ref|XP_003829506.1| PREDICTED: 39S ribosomal protein L3, mitochondrial isoform 2 [Pan
paniscus]
Length = 375
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 145/289 (50%), Gaps = 29/289 (10%)
Query: 3 LNHNLRLALSNCNRILSRKSNIFETPFLFGCSEVINIRQKK--VW--IRPPRVKYPLWFL 58
L L AL NR+ + N+ G E + +K+ +W +R K W
Sbjct: 18 LGDGLGAALGQGNRVTTNSLNVSLIRRNVGSEEKVGDLKKRTHIWLFVRGLHGKSGTW-- 75
Query: 59 QKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRT 118
+ E+L+ N FI+++V D+ A + P I P +P S R
Sbjct: 76 ------WDEHLSEENVPFIKQLVSDEDKAQLASKLCPLKDEPWPIHPWEP-----GSFRV 124
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLI +G PLW K+G+K TL+QV D H++KY E K+ L
Sbjct: 125 GLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCN-----------GKMATLS 173
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
VG ++ ++ G+PPK+ + F IT +A + PGTPL AAHFRP +++DV
Sbjct: 174 VGGKTVSRFRKATSILEFYQELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDV 233
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
T+ +GFQGVMKRWGFKG PATHG TK+HRR G +A+G RV+PG
Sbjct: 234 TAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATGD-IGRVWPG 281
>gi|194383748|dbj|BAG59232.1| unnamed protein product [Homo sapiens]
Length = 375
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 145/289 (50%), Gaps = 29/289 (10%)
Query: 3 LNHNLRLALSNCNRILSRKSNIFETPFLFGCSEVINIRQKK--VW--IRPPRVKYPLWFL 58
L L AL NR+ + N+ G E + +K+ +W +R K W
Sbjct: 18 LGDGLGAALGPGNRVTTNSLNVSLIRRNVGSEEKVGDLKKRTHIWLFVRGLHGKSGTW-- 75
Query: 59 QKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRT 118
+ E+L+ N FI+++V D+ A + P I P +P S R
Sbjct: 76 ------WDEHLSEENVPFIKQLVSDEDKAQLASKLCPLKDEPWPIHPWEP-----GSFRV 124
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLI +G PLW K+G+K TL+QV D H++KY E K+ L
Sbjct: 125 GLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCN-----------GKMATLS 173
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
VG ++ ++ G+PPK+ + F IT +A + PGTPL AAHFRP +++DV
Sbjct: 174 VGGKTVSRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDV 233
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
T+ +GFQGVMKRWGFKG PATHG TK+HRR G +A+G RV+PG
Sbjct: 234 TAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATGD-IGRVWPG 281
>gi|41053377|ref|NP_956301.1| 39S ribosomal protein L3, mitochondrial [Danio rerio]
gi|33416933|gb|AAH55650.1| Mitochondrial ribosomal protein L3 [Danio rerio]
Length = 319
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 125/211 (59%), Gaps = 19/211 (9%)
Query: 84 QCGAPAVKSGIETYNTPL-------KIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGE 136
Q GAP ++ + T+ + + EP E S+R GL+ +G P+W K+GE
Sbjct: 31 QSGAPVIQC-VRTHRSNTWWDEHLTEDEPWPRHEWVEGSRRVGLVAIKLGMMPVWSKSGE 89
Query: 137 KCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGL 196
+ T++QV D H++K++ E++ + L+VG ++ P Y +
Sbjct: 90 RHVVTMLQVKDCHVVKHLSKEDYNGHTS-----------ALVVGGKNVSPFHRPVGYLEI 138
Query: 197 FKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGF 256
F+N+G+PPK+KL F +T +A++ PGTPL AAHFRP +++DV T+ +GFQGVMKRWGF
Sbjct: 139 FQNAGIPPKQKLTTFCVTDNAIIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGF 198
Query: 257 KGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
KG PA+HG TK+HRR G + G A+V+ G
Sbjct: 199 KGQPASHGQTKTHRRPGALGPGGDPAKVFKG 229
>gi|344298547|ref|XP_003420953.1| PREDICTED: 39S ribosomal protein L3, mitochondrial-like [Loxodonta
africana]
Length = 348
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 130/223 (58%), Gaps = 17/223 (7%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKI 124
+ E+L+ N FI+++V D+ K+ + + PLK EP S R GLI
Sbjct: 49 WDEHLSEENVPFIKQLVSDEN-----KAQLASKLCPLKDEPWPVPPWEPGSSRVGLIALK 103
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K+G++ TL+QV D H++KY P E+ K+ L VG ++
Sbjct: 104 LGMMPLWTKDGKQHVVTLLQVQDCHVLKYTPKEDHN-----------GKMAALTVGGKTV 152
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
+ ++ G+PPK+K+ F +T +A++ PGTPL AAHFRP +++DV T+
Sbjct: 153 SRFHKSPSILEFYQELGLPPKQKIKIFHVTDNAVIKPGTPLYAAHFRPGQYVDVTAKTIG 212
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWGF G PA+HG TK+HRR G I++G ARV+PG
Sbjct: 213 KGFQGVMKRWGFAGQPASHGQTKTHRRPGAISTG-DVARVWPG 254
>gi|332232550|ref|XP_003265467.1| PREDICTED: 39S ribosomal protein L3, mitochondrial isoform 1
[Nomascus leucogenys]
Length = 348
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 124/228 (54%), Gaps = 17/228 (7%)
Query: 60 KERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTG 119
K + E+L+ N FI+++V D+ A + P I P +P S R G
Sbjct: 44 KSGTWWDEHLSEENVPFIKQLVSDEDKAQLASKLCPLKDEPWPIHPWEP-----GSFRVG 98
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
LI +G PLW K+G+K TL+QV D H++KY E K+ L V
Sbjct: 99 LIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENHN-----------GKMAALSV 147
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
G ++ ++ G+PPK+ + F IT +A + PGTPL AAHFRP +++DV
Sbjct: 148 GGKTVSRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVT 207
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
T+ +GFQGVMKRWGFKG PATHG TK+HRR G IA+G RV+PG
Sbjct: 208 AKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAIATGD-IGRVWPG 254
>gi|444706957|gb|ELW48271.1| 39S ribosomal protein L3, mitochondrial, partial [Tupaia chinensis]
Length = 344
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 126/228 (55%), Gaps = 17/228 (7%)
Query: 60 KERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTG 119
K + E+L+ N F++ +V ++ A + P + P +P S R G
Sbjct: 14 KSSTWWDEHLSAENVPFVKRLVSEEDKAQLASKLCPLRDEPWPLHPWEP-----GSCRVG 68
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
LI +G PLW K+G+K TL+QV D H++KY E K+ L V
Sbjct: 69 LIAVKLGMMPLWTKDGQKHAVTLLQVQDCHVLKYTSKENHN-----------GKMAALTV 117
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
G ++ ++ G+PPK+K+ F +T +A++ PGTPL AAHFRP +++DV
Sbjct: 118 GGKTVSRFHKPASVLEFYQELGLPPKQKVKIFHVTDNAIIKPGTPLFAAHFRPGQYVDVT 177
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
T+ +GFQGVMKRWGFKG PATHG TK+HRR G I++G ARV+PG
Sbjct: 178 AKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTG-DVARVWPG 224
>gi|114589225|ref|XP_516751.2| PREDICTED: 39S ribosomal protein L3, mitochondrial isoform 2 [Pan
troglodytes]
gi|410223650|gb|JAA09044.1| mitochondrial ribosomal protein L3 [Pan troglodytes]
gi|410247348|gb|JAA11641.1| mitochondrial ribosomal protein L3 [Pan troglodytes]
gi|410294876|gb|JAA26038.1| mitochondrial ribosomal protein L3 [Pan troglodytes]
gi|410349713|gb|JAA41460.1| mitochondrial ribosomal protein L3 [Pan troglodytes]
Length = 348
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 124/228 (54%), Gaps = 17/228 (7%)
Query: 60 KERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTG 119
K + E+L+ N FI+++V D+ A + P I P +P S R G
Sbjct: 44 KSGTWWDEHLSEENVPFIKQLVSDEDKAQLASKLCPLKDEPWPIHPWEP-----GSFRVG 98
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
LI +G PLW K+G+K TL+QV D H++KY E K+ L V
Sbjct: 99 LIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCN-----------GKMATLSV 147
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
G ++ ++ G+PPK+ + F IT +A + PGTPL AAHFRP +++DV
Sbjct: 148 GGKTVSRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVT 207
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
T+ +GFQGVMKRWGFKG PATHG TK+HRR G +A+G RV+PG
Sbjct: 208 AKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATGD-IGRVWPG 254
>gi|327274961|ref|XP_003222243.1| PREDICTED: 39S ribosomal protein L3, mitochondrial-like [Anolis
carolinensis]
Length = 329
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 127/223 (56%), Gaps = 17/223 (7%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKI 124
+ E+L+ N ++ V ++ A + P ++P QP S+R G+I
Sbjct: 31 WDEHLSEENFKLLKTFVKEEDQAQTASKLCPLKDEPWPLQPWQP-----GSRRVGIIAVK 85
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K GEK TL+QV D H+I++IP EE K L+VGA++
Sbjct: 86 LGMMPLWTKKGEKLAVTLLQVQDCHVIRHIPKEE-----------SDGKYPALIVGAKNV 134
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
+ +++ G+P K+K+ F +T +A++ PGTPL AAHFRP +++DV T+
Sbjct: 135 SQFQKSVSILEMYRAVGLPVKQKISTFRVTENAIIKPGTPLYAAHFRPGQYVDVTAKTIG 194
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWGFKG PA+HG TK+HRR G I S + A+V+ G
Sbjct: 195 KGFQGVMKRWGFKGQPASHGQTKTHRRPGAI-SNSKVAKVFKG 236
>gi|397518670|ref|XP_003829505.1| PREDICTED: 39S ribosomal protein L3, mitochondrial isoform 1 [Pan
paniscus]
Length = 348
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 124/228 (54%), Gaps = 17/228 (7%)
Query: 60 KERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTG 119
K + E+L+ N FI+++V D+ A + P I P +P S R G
Sbjct: 44 KSGTWWDEHLSEENVPFIKQLVSDEDKAQLASKLCPLKDEPWPIHPWEP-----GSFRVG 98
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
LI +G PLW K+G+K TL+QV D H++KY E K+ L V
Sbjct: 99 LIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCN-----------GKMATLSV 147
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
G ++ ++ G+PPK+ + F IT +A + PGTPL AAHFRP +++DV
Sbjct: 148 GGKTVSRFRKATSILEFYQELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVT 207
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
T+ +GFQGVMKRWGFKG PATHG TK+HRR G +A+G RV+PG
Sbjct: 208 AKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATGD-IGRVWPG 254
>gi|57530745|ref|NP_001006366.1| 39S ribosomal protein L3, mitochondrial [Gallus gallus]
gi|53128932|emb|CAG31347.1| hypothetical protein RCJMB04_5e20 [Gallus gallus]
Length = 348
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 128/223 (57%), Gaps = 17/223 (7%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKI 124
+ E+L+ N F+ + A ++ + PLK EP E S R G++
Sbjct: 50 WHEHLSEENVQFLR-----KAAAEEYRAQTASKLCPLKDEPWPLNEWKPDSVRVGVVAVK 104
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G P+W K+G+K TL++V D H++KY+ E+ K LLVG ++
Sbjct: 105 LGMMPIWTKSGKKHAVTLLKVQDCHVLKYVSKED-----------SGGKTAKLLVGGKNV 153
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
P ++ +F+ +GVP K+K+ F +T DA++ PGTPL AAHFRP + +DV T+
Sbjct: 154 SPFSKSEAEMEIFREAGVPRKQKVTTFNVTDDAIIKPGTPLYAAHFRPGQIVDVTAKTIG 213
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWGFKG PA+HG TK+HRR G I++ +RV+PG
Sbjct: 214 KGFQGVMKRWGFKGQPASHGQTKTHRRPGAISTNK-VSRVFPG 255
>gi|6005862|ref|NP_009139.1| 39S ribosomal protein L3, mitochondrial [Homo sapiens]
gi|133116|sp|P09001.1|RM03_HUMAN RecName: Full=39S ribosomal protein L3, mitochondrial; Short=L3mt;
Short=MRP-L3
gi|34754|emb|CAA29639.1| unnamed protein product [Homo sapiens]
gi|13097225|gb|AAH03375.1| Mitochondrial ribosomal protein L3 [Homo sapiens]
gi|48145557|emb|CAG33001.1| MRPL3 [Homo sapiens]
gi|119599615|gb|EAW79209.1| mitochondrial ribosomal protein L3 [Homo sapiens]
gi|312152442|gb|ADQ32733.1| mitochondrial ribosomal protein L3 [synthetic construct]
Length = 348
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 124/228 (54%), Gaps = 17/228 (7%)
Query: 60 KERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTG 119
K + E+L+ N FI+++V D+ A + P I P +P S R G
Sbjct: 44 KSGTWWDEHLSEENVPFIKQLVSDEDKAQLASKLCPLKDEPWPIHPWEP-----GSFRVG 98
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
LI +G PLW K+G+K TL+QV D H++KY E K+ L V
Sbjct: 99 LIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCN-----------GKMATLSV 147
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
G ++ ++ G+PPK+ + F IT +A + PGTPL AAHFRP +++DV
Sbjct: 148 GGKTVSRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVT 207
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
T+ +GFQGVMKRWGFKG PATHG TK+HRR G +A+G RV+PG
Sbjct: 208 AKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATGD-IGRVWPG 254
>gi|426342146|ref|XP_004036373.1| PREDICTED: 39S ribosomal protein L3, mitochondrial [Gorilla gorilla
gorilla]
Length = 344
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 99/280 (35%), Positives = 140/280 (50%), Gaps = 28/280 (10%)
Query: 3 LNHNLRLALSNCNRILSRKSNIFETPFLFGCSEVINIRQKK--VW--IRPPRVKYPLWFL 58
L L AL NR+ + N+ G E + +K+ +W +R K W
Sbjct: 18 LGDGLGAALGPGNRVTTNSLNVSLIRRNVGGEEKVGDLKKRTHIWLFVRGLHGKSGTW-- 75
Query: 59 QKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRT 118
+ E+L+ N FI+++V D+ A + P I P +P S R
Sbjct: 76 ------WDEHLSEENVPFIKQLVSDEDKAQLASKLCPLKDEPWPIHPWEP-----GSFRV 124
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLI +G PLW K+G+K TL+QV D H++KY E K+ L
Sbjct: 125 GLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENHN-----------GKMATLS 173
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
VG ++ ++ G+PPK+ + F IT +A + PGTPL AAHFRP +++DV
Sbjct: 174 VGGKTVSRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDV 233
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASG 278
T+ +GFQGVMKRWGFKG PATHG TK+HRR G +A+G
Sbjct: 234 TAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATG 273
>gi|343960635|dbj|BAK61907.1| mitochondrial 39S ribosomal protein L3 [Pan troglodytes]
Length = 348
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 124/228 (54%), Gaps = 17/228 (7%)
Query: 60 KERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTG 119
K + E+L+ N FI+++V D+ A + P I P +P S R G
Sbjct: 44 KSGTWWDEHLSEENVPFIKQLVSDEDKAQLASKLCPLKDEPWPIHPWEP-----GSFRVG 98
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
LI +G PLW K+G+K TL+QV D H++KY E K+ L V
Sbjct: 99 LIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCN-----------GKMATLSV 147
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
G ++ ++ G+PPK+ + F IT +A + PGTPL AAHFRP +++DV
Sbjct: 148 GGKTVSRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVT 207
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
T+ +GFQGVMKRWGFKG PATHG TK+HRR G +A+G RV+PG
Sbjct: 208 AKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATGD-IDRVWPG 254
>gi|402861576|ref|XP_003895164.1| PREDICTED: 39S ribosomal protein L3, mitochondrial [Papio anubis]
Length = 348
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 123/228 (53%), Gaps = 17/228 (7%)
Query: 60 KERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTG 119
K + E+L+ N FI+++V D+ A + P I P +P S R G
Sbjct: 44 KSGTWWDEHLSEENVPFIKQLVSDEDKAQLASKLCPLKDEPWPIHPWEP-----GSFRVG 98
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
LI +G PLW K+GEK TL+QV D H++KY E K L V
Sbjct: 99 LIALKLGMMPLWTKDGEKHVVTLLQVQDCHVLKYTSKENHN-----------GKTAALSV 147
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
G ++ ++ G+PPK+ + F IT +A + PGTPL AAHFRP +++DV
Sbjct: 148 GGKTVSRFRKATPVLEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVT 207
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
T+ +GFQGVMKRWGFKG PATHG TK+HRR G I++G RV+PG
Sbjct: 208 AKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTGD-IGRVWPG 254
>gi|326922075|ref|XP_003207277.1| PREDICTED: 39S ribosomal protein L3, mitochondrial-like [Meleagris
gallopavo]
Length = 348
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 128/223 (57%), Gaps = 17/223 (7%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKI 124
+ E+L+ N+ F+ A ++ + PLK EP E S R G++
Sbjct: 50 WHEHLSEENEQFLRNAT-----AEEYRALTASKLCPLKDEPWPLNEWKPDSVRVGVVAVK 104
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G P+W K+G+K TL++V D H++KYI E+ R LLVG ++
Sbjct: 105 LGMMPIWTKSGKKHAVTLLKVQDCHVLKYISKEDSGGKR-----------AKLLVGGKNV 153
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
P ++ +F+ +GVP K+K+ F +T DA++ PGTPL AAHFRP + +DV T+
Sbjct: 154 SPFFKSEAEMEIFREAGVPRKQKVTSFDVTDDAIIKPGTPLYAAHFRPGQIVDVTAKTIG 213
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGV+KRWGFKG PA+HG TK+HRR G I++ +RV+PG
Sbjct: 214 KGFQGVVKRWGFKGQPASHGQTKTHRRPGAISTNK-VSRVFPG 255
>gi|90075128|dbj|BAE87244.1| unnamed protein product [Macaca fascicularis]
gi|355560037|gb|EHH16765.1| hypothetical protein EGK_12107 [Macaca mulatta]
gi|355747060|gb|EHH51674.1| hypothetical protein EGM_11098 [Macaca fascicularis]
gi|380790301|gb|AFE67026.1| 39S ribosomal protein L3, mitochondrial [Macaca mulatta]
gi|383413717|gb|AFH30072.1| 39S ribosomal protein L3, mitochondrial [Macaca mulatta]
gi|384942336|gb|AFI34773.1| 39S ribosomal protein L3, mitochondrial [Macaca mulatta]
Length = 348
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 123/228 (53%), Gaps = 17/228 (7%)
Query: 60 KERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTG 119
K + E+L+ N FI+++V D+ A + P I P +P S R G
Sbjct: 44 KSGTWWDEHLSEENVPFIKQLVSDEDKAQLASKLCPLKDEPWPIHPWEP-----GSFRVG 98
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
LI +G PLW K+GEK TL+QV D H++KY E K L V
Sbjct: 99 LIALKLGMMPLWTKDGEKHVVTLLQVQDCHVLKYTSKENHN-----------GKTAALSV 147
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
G ++ ++ G+PPK+ + F IT +A + PGTPL AAHFRP +++DV
Sbjct: 148 GGKTVSRFRKATPVLEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVT 207
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
T+ +GFQGV+KRWGFKG PATHG TK+HRR G +++G RV+PG
Sbjct: 208 AKTIGKGFQGVVKRWGFKGQPATHGQTKTHRRPGALSTGD-IGRVWPG 254
>gi|395734146|ref|XP_002814097.2| PREDICTED: LOW QUALITY PROTEIN: 39S ribosomal protein L3,
mitochondrial [Pongo abelii]
Length = 383
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 144/293 (49%), Gaps = 37/293 (12%)
Query: 7 LRLALSNCNRILSRKSNIFETPFLFGCSEVINIRQKK--VW--IRPPRVKYPLWFLQKER 62
L AL NR+ + N+ G E + +K+ +W +R K W
Sbjct: 22 LGAALGPGNRVTTNSLNVSLIRRNVGGEEKVGDTKKRTHIWLFVRGLHGKSGTW------ 75
Query: 63 AEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIG 122
+ E+L+ N FI+++V D+ A + P I P +P S R GLI
Sbjct: 76 --WDEHLSEENVPFIKQLVSDEDKAQLASKLCPLKDEPWPIHPWEP-----GSFRVGLIA 128
Query: 123 KIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAE 182
+G PLW K+G+K TL+QV D H++KY E K+ L VG +
Sbjct: 129 LKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENHN-----------GKMATLSVGGK 177
Query: 183 SGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLP--------PGTPLTAAHFRPRE 234
+ ++ G+PPK+ + F IT +A L PGTPL AAHFRP +
Sbjct: 178 TVSRFRKATSILEFYRELGLPPKQTVKXFNITDNAALNRFFSAYINPGTPLYAAHFRPGQ 237
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
++DV T+ +GFQGVMKRWGFKG PATHG TK+HRR G +A+G RV+PG
Sbjct: 238 YVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATGD-IGRVWPG 289
>gi|148689150|gb|EDL21097.1| mitochondrial ribosomal protein L3, isoform CRA_b [Mus musculus]
Length = 292
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 118/199 (59%), Gaps = 16/199 (8%)
Query: 91 KSGIETYNTPLKIEP--LQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDN 148
K+ + + PLK EP L P E S R GLI +G PLW K+G+K TL+QV D
Sbjct: 14 KTQLTSKLNPLKDEPWPLHPWE--PGSFRVGLIALKLGMMPLWTKDGQKHAVTLLQVQDC 71
Query: 149 HIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKL 208
H++KY P E+ K+ L VG ++ +++ G+PPK+
Sbjct: 72 HVLKYTPKEDHN-----------GKIAALTVGGKTVSRFYKPDSRLEFYRDLGLPPKQIH 120
Query: 209 CRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKS 268
F +T +A++ PGTPL AAHFRP +++DV T+ +GFQGVMKRWGFKG PA+HG TK+
Sbjct: 121 KIFHVTDNAVIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPASHGQTKT 180
Query: 269 HRRGGCIASGAGKARVYPG 287
HRR G I++G ARV+PG
Sbjct: 181 HRRPGAISTG-DIARVWPG 198
>gi|432092976|gb|ELK25334.1| 39S ribosomal protein L3, mitochondrial [Myotis davidii]
Length = 396
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 107/176 (60%), Gaps = 12/176 (6%)
Query: 112 TTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPK 171
+ S R GL+ +G P W K+G+K TL+QV D H+++Y P E
Sbjct: 139 SLGSSRVGLVAVKLGMMPFWTKDGQKHVATLLQVQDCHVLRYTPKEN-----------ND 187
Query: 172 RKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFR 231
K+ L VG ++ + ++ G+PPK+K+ F +T +A++ PGTPL AAHFR
Sbjct: 188 GKMAALTVGGKTVSRFYKSTSRLEFYQELGLPPKQKIKVFRVTDNAVIKPGTPLYAAHFR 247
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
P +++DV T+ +GFQGVMKRWGFKG PATHG TK+HRR G I++G ARV+PG
Sbjct: 248 PGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTG-DVARVWPG 302
>gi|260798664|ref|XP_002594320.1| hypothetical protein BRAFLDRAFT_201187 [Branchiostoma floridae]
gi|229279553|gb|EEN50331.1| hypothetical protein BRAFLDRAFT_201187 [Branchiostoma floridae]
Length = 242
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 74/148 (50%), Positives = 99/148 (66%), Gaps = 9/148 (6%)
Query: 143 VQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGV 202
VQV D H+I+YIP E+ +P +K G L +G S P ++EY +F+ +G+
Sbjct: 1 VQVQDCHVIRYIPVED--------SDDPDKKQGMLTLGHRSCSPFYLSEEYLRMFEKAGI 52
Query: 203 PPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPAT 262
PPK+K+ F ++ DA + PGTPL AAHFRP +++DV G T+D+GFQGVMKR GFKG PA+
Sbjct: 53 PPKRKIAEFKVSMDAAIKPGTPLYAAHFRPGQYVDVYGKTIDKGFQGVMKRHGFKGQPAS 112
Query: 263 HGVTKSHRRGGCIASGAGKARVYPGGVL 290
HG TK+HRR G I + AG RV PG L
Sbjct: 113 HGQTKTHRRPGAIGT-AGHGRVLPGTKL 139
>gi|390343560|ref|XP_001195229.2| PREDICTED: 39S ribosomal protein L3, mitochondrial-like
[Strongylocentrotus purpuratus]
Length = 346
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 145/274 (52%), Gaps = 28/274 (10%)
Query: 1 MALNHNLRLALSNCNRILSRKSNIFETPFLFG--CSEVINIRQKKVWIRPPRVKYPLWFL 58
+A+ H++ L NC R+ S F + L S N+R K + + V
Sbjct: 13 VAVKHSV---LHNC-RVSSSTQLPFGSSRLLAPTSSTTGNVRHKHFYPKFKEVDLSKENF 68
Query: 59 QKERAEYIE-NLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKR 117
+ + +E +LT+ N+ F+ + S + +PLK P E T SKR
Sbjct: 69 NRFKQRPVEGDLTKENETFVYKW-----------SQTKHMMSPLKQAPWLKGEWTPQSKR 117
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
G+I +G PLW K G++ TTL+QV++ ++I + P+ + +P G +
Sbjct: 118 AGVIAIKLGMQPLWTKEGKRVPTTLLQVLECNVIDF-HPQGLNGSDRP---------GTV 167
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
LV A++ P +EY LFK+ +P K+ + F +T +A L PGTPL AAHFRP ++D
Sbjct: 168 LVAAKNAPPYYKDEEYADLFKSVCLPVKEHITSFNVTDNAALQPGTPLYAAHFRPGMYVD 227
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRR 271
+ T+D+GFQGVMKRWG KG PA+HG TK+HR+
Sbjct: 228 IAAKTIDKGFQGVMKRWGMKGQPASHGATKTHRK 261
>gi|449492834|ref|XP_002196500.2| PREDICTED: 39S ribosomal protein L3, mitochondrial [Taeniopygia
guttata]
Length = 242
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 101/159 (63%), Gaps = 12/159 (7%)
Query: 129 PLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSL 188
P+W K+GEK TL++V D H+++Y+ EE K LLVG ++ P
Sbjct: 3 PIWTKSGEKHAVTLLKVQDCHVLRYVSKEE-----------SGAKTAKLLVGGKNVSPFS 51
Query: 189 YTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQ 248
+ +FK +GVP K+K+ F +T DA++ PGTPL AAHFRP +F+DV T+ +GFQ
Sbjct: 52 KPESAHEIFKEAGVPRKQKVTTFNVTDDAIIKPGTPLYAAHFRPGQFVDVTAKTIGKGFQ 111
Query: 249 GVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GVMKRWGFKG PA+HG TK+HRR G I++ A+VY G
Sbjct: 112 GVMKRWGFKGQPASHGQTKTHRRPGAISTNKA-AKVYRG 149
>gi|324516671|gb|ADY46600.1| 39S ribosomal protein L3 [Ascaris suum]
Length = 401
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 141/267 (52%), Gaps = 24/267 (8%)
Query: 33 CSEVINIRQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKS 92
C + + IR ++ + PP W QKE E L + + +V+ +Q + + S
Sbjct: 13 CWQCVQIRGRRRTLTPPP-----WIPQKEE-RIFEQLEPETEELLRQVI-EQEKSGYIPS 65
Query: 93 GIETYNTPLKIEPLQPL------EITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVV 146
+PL+ E + + E T +SKR GL+ + +G P W+ NG + T+++
Sbjct: 66 WRSRDESPLREELVSNVKAGEGNEWTPNSKRVGLLARKLGMLPQWLNNGTRVLCTMLEFP 125
Query: 147 DNHIIKYIPPEEFKPNRKPYRGEPKRKLGC------LLVGAESGDPSLYTKEYCGLFKNS 200
+N ++ I PE + RK G+ K+ G + VGA + DPS +T Y +F
Sbjct: 126 ENCVVSAIDPETW--YRKSIVGK-KKAFGIQGPMWKVTVGAVNADPSKFTHVYRDIFMRQ 182
Query: 201 GVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMP 260
G+P K+ L F++T DA++ PGTPL HF +++ V G T+D GFQG M RWG KGMP
Sbjct: 183 GLPVKQHLGSFVVTEDAVVAPGTPLHVCHFSVGQYIAVTGRTIDWGFQGGMHRWGMKGMP 242
Query: 261 ATHGVTKSHRRGGCIASGAGKARVYPG 287
A TKSHRR G I S G ARV+PG
Sbjct: 243 ANR-TTKSHRRIGSIGS-TGDARVWPG 267
>gi|99032309|pdb|2FTC|C Chain C, Structural Model For The Large Subunit Of The Mammalian
Mitochondrial Ribosome
Length = 211
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 101/171 (59%), Gaps = 12/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R GLI +G PLW K+G+K TL+QV D H++KY E K+
Sbjct: 1 RVGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCNG-----------KMAT 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L VG ++ ++ G+PPK+ + F IT +A + PGTPL AAHFRP +++
Sbjct: 50 LSVGGKTVSRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV T+ +GFQGVMKRWGFKG PATHG TK+HRR G +A+G RV+PG
Sbjct: 110 DVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATGD-IGRVWPG 159
>gi|410971434|ref|XP_003992174.1| PREDICTED: 39S ribosomal protein L3, mitochondrial isoform 2 [Felis
catus]
Length = 243
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 100/159 (62%), Gaps = 12/159 (7%)
Query: 129 PLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSL 188
PLW K+G+K TL+QV D H++KY P E K+ L VG ++
Sbjct: 3 PLWTKDGQKHVVTLLQVQDCHVLKYTPKENHD-----------GKMAALTVGGKTVSRFY 51
Query: 189 YTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQ 248
+ ++ G+PPK+K+ F +T +A++ PGTPL AAHFRP +++DV T+ +GFQ
Sbjct: 52 KSPSLLEFYQELGLPPKQKVKIFRVTDNAVIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQ 111
Query: 249 GVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GVMKRWGFKG PATHG TK+HRR G +++G ARV+PG
Sbjct: 112 GVMKRWGFKGQPATHGQTKTHRRPGAVSTG-DVARVWPG 149
>gi|403265861|ref|XP_003925130.1| PREDICTED: 39S ribosomal protein L3, mitochondrial isoform 2
[Saimiri boliviensis boliviensis]
Length = 243
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 100/162 (61%), Gaps = 12/162 (7%)
Query: 129 PLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSL 188
PLW K+G++ TL+QV D H++KYI E+ K+ L VG ++
Sbjct: 3 PLWTKDGQRHVVTLLQVQDCHVLKYISKEDHD-----------GKMAALSVGGKTVSRFR 51
Query: 189 YTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQ 248
++ G+PPK+K+ F IT +A L PGTPL AAHFRP +++DV T+ +GFQ
Sbjct: 52 KPTHILEFYQELGLPPKQKVKIFRITENAALKPGTPLYAAHFRPGQYVDVTAKTIGKGFQ 111
Query: 249 GVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVL 290
GVMKRWGFKG PATHG TK+HRR G I++G ARV+PG L
Sbjct: 112 GVMKRWGFKGQPATHGQTKTHRRPGAISTG-DVARVWPGTKL 152
>gi|358332732|dbj|GAA51353.1| 39S ribosomal protein L3 mitochondrial [Clonorchis sinensis]
Length = 285
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 97/165 (58%), Gaps = 20/165 (12%)
Query: 137 KCRTTLV-------QVVDNHIIKYIPPEEFKP-------------NRKPYRGEPKRKLGC 176
+C TTL V DNH ++Y+PP + N++ +R+ G
Sbjct: 9 RCYTTLWIDRHQIRDVPDNHALRYVPPSDIDQYISLKDPRGYWLNNKRMPSWIAQRRWGL 68
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
LVGA S DP ++ +CGLFK +GVPPK+K+ RF+++PDA L PGTPL HFR +++
Sbjct: 69 QLVGAVSADPLEFSAAWCGLFKEAGVPPKRKISRFLVSPDAALKPGTPLGVHHFRIGDYV 128
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK 281
DV T++RGFQGV++RWG G PA HG TK HRR G A G+
Sbjct: 129 DVTARTINRGFQGVIERWGMSGGPAGHGSTKFHRRMGSSAGTGGR 173
>gi|156363345|ref|XP_001626005.1| predicted protein [Nematostella vectensis]
gi|156212865|gb|EDO33905.1| predicted protein [Nematostella vectensis]
Length = 264
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 107/180 (59%), Gaps = 12/180 (6%)
Query: 110 EITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGE 169
E SSKRTG +G +G LW+K+G + TL+Q+ D +++ + +G
Sbjct: 1 EWQKSSKRTGAVGVKLGMSALWLKDGRRLPVTLIQIKDCEVVQA----------RVAKGH 50
Query: 170 PKRKLGC-LLVGAESG-DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTA 227
R L VGA + + + K G FK V PK+K+C F +TPDA+L PGTP+TA
Sbjct: 51 GGRDPQTELQVGAVNKLELNQIGKAQFGHFKRFSVRPKRKVCSFPVTPDALLTPGTPITA 110
Query: 228 AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
AHF P +++ ++G+T D+GFQGVMKRWG G PA+HG +K+HR+ G G RV+PG
Sbjct: 111 AHFYPGQYVKIQGVTKDKGFQGVMKRWGMGGQPASHGQSKTHRKMGATGGGQDPGRVWPG 170
>gi|116283537|gb|AAH16586.1| Mrpl3 protein [Mus musculus]
Length = 243
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 99/159 (62%), Gaps = 12/159 (7%)
Query: 129 PLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSL 188
PLW K+G+K TL+QV D H++KY P E+ K+ L VG ++
Sbjct: 3 PLWTKDGQKHAVTLLQVQDCHVLKYTPKEDHN-----------GKIAALTVGGKTVSRFY 51
Query: 189 YTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQ 248
+++ G+PPK+ F +T +A++ PGTPL AAHFRP +++DV T+ +GFQ
Sbjct: 52 KPDSRLEFYRDLGLPPKQIHKIFHVTDNAVIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQ 111
Query: 249 GVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GVMKRWGFKG PA+HG TK+HRR G I++G ARV+PG
Sbjct: 112 GVMKRWGFKGQPASHGQTKTHRRPGAISTG-DIARVWPG 149
>gi|395816524|ref|XP_003781751.1| PREDICTED: 39S ribosomal protein L3, mitochondrial-like isoform 2
[Otolemur garnettii]
Length = 243
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 98/159 (61%), Gaps = 12/159 (7%)
Query: 129 PLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSL 188
PLW K+G+K TL+QV D H++KY E K+ L VG ++
Sbjct: 3 PLWTKDGQKHVVTLLQVQDCHVLKYTSKESHN-----------GKMAALHVGGKTVSRFH 51
Query: 189 YTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQ 248
++ G+PPK+K+ F +T +A++ PGTPL AAHFRP +++DV T+ +GFQ
Sbjct: 52 KPPSSLEFYRELGLPPKQKVKIFHVTDNAIIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQ 111
Query: 249 GVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GVMKRWGFKG PATHG TK+HRR G IA+G ARV+PG
Sbjct: 112 GVMKRWGFKGQPATHGQTKTHRRPGAIATG-DIARVWPG 149
>gi|332232552|ref|XP_003265468.1| PREDICTED: 39S ribosomal protein L3, mitochondrial isoform 2
[Nomascus leucogenys]
Length = 243
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 95/159 (59%), Gaps = 12/159 (7%)
Query: 129 PLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSL 188
PLW K+G+K TL+QV D H++KY E K+ L VG ++
Sbjct: 3 PLWTKDGQKHVVTLLQVQDCHVLKYTSKENHN-----------GKMAALSVGGKTVSRFR 51
Query: 189 YTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQ 248
++ G+PPK+ + F IT +A + PGTPL AAHFRP +++DV T+ +GFQ
Sbjct: 52 KATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQ 111
Query: 249 GVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GVMKRWGFKG PATHG TK+HRR G IA+G RV+PG
Sbjct: 112 GVMKRWGFKGQPATHGQTKTHRRPGAIATG-DIGRVWPG 149
>gi|402595137|gb|EJW89063.1| mitochondrial 39S ribosomal protein L3 [Wuchereria bancrofti]
Length = 410
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 128/242 (52%), Gaps = 11/242 (4%)
Query: 54 PLWFLQKERAEYIENLTRNNKAFIEEVV--HDQCGAPAVKSGIE-TYNTPLKIEPLQ--P 108
P W +KE +E + + + +++ + + P ++ ++ TPL P + P
Sbjct: 44 PPWVPKKEE-NIVEPIEPSTRVLLQQFIKLERKVHVPITRTNPHMSFKTPLCRIPQETNP 102
Query: 109 LEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRG 168
E T S R G++ + IG +P W +G + TL++ N +I I PE + R
Sbjct: 103 PEWTPESNRVGMLARKIGMFPQWGVDGTRFLCTLLEFPKNLVISAIDPETYYRISMVGRR 162
Query: 169 EPKRKLGC---LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+ + G + VGA GDP+ +T Y F+ G P KK + F++T DA++ PGT L
Sbjct: 163 KAYGRYGARWRVTVGAVDGDPTKFTARYRATFERHGFPVKKHIASFLVTEDAVVQPGTEL 222
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
HF+ +++ + G T+D GFQG M RWGFKGMPA G TKSHRR G I S G ARV
Sbjct: 223 HVCHFKVGQYITITGHTIDWGFQGGMHRWGFKGMPA-RGTTKSHRRIGAIGS-KGDARVR 280
Query: 286 PG 287
PG
Sbjct: 281 PG 282
>gi|321259123|ref|XP_003194282.1| ribosomal large subunit assembly and maintenance-related protein
[Cryptococcus gattii WM276]
gi|317460753|gb|ADV22495.1| Ribosomal large subunit assembly and maintenance-related protein,
putative [Cryptococcus gattii WM276]
Length = 308
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 103/183 (56%), Gaps = 12/183 (6%)
Query: 105 PLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRK 164
P P + T + RTGLI + G LW +G + T++QV N ++++ PP P
Sbjct: 32 PSAPSKWTPQTLRTGLIARKRGMTALWDADGRRWPVTVLQVDANQVVRHSPP----PPTS 87
Query: 165 PYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTP 224
PY L +GA TK+ G F+ +GV PK +L F ++ DA++P GT
Sbjct: 88 PYH--------TLQIGASPRREKTTTKQQLGHFRKAGVEPKYRLKEFQVSGDAVVPVGTE 139
Query: 225 LTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARV 284
L+A HF P +F+DV+G+T+ +GFQGVMKR GF+G+ A+HG + HR GG I RV
Sbjct: 140 LSAGHFVPGQFVDVQGVTIGKGFQGVMKRHGFRGLKASHGTSVKHRSGGSIGQNQDPGRV 199
Query: 285 YPG 287
PG
Sbjct: 200 IPG 202
>gi|397518674|ref|XP_003829507.1| PREDICTED: 39S ribosomal protein L3, mitochondrial isoform 3 [Pan
paniscus]
Length = 243
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 95/159 (59%), Gaps = 12/159 (7%)
Query: 129 PLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSL 188
PLW K+G+K TL+QV D H++KY E K+ L VG ++
Sbjct: 3 PLWTKDGQKHVVTLLQVQDCHVLKYTSKENCN-----------GKMATLSVGGKTVSRFR 51
Query: 189 YTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQ 248
++ G+PPK+ + F IT +A + PGTPL AAHFRP +++DV T+ +GFQ
Sbjct: 52 KATSILEFYQELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQ 111
Query: 249 GVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GVMKRWGFKG PATHG TK+HRR G +A+G RV+PG
Sbjct: 112 GVMKRWGFKGQPATHGQTKTHRRPGAVATGD-IGRVWPG 149
>gi|332818103|ref|XP_003310090.1| PREDICTED: 39S ribosomal protein L3, mitochondrial [Pan
troglodytes]
Length = 243
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 95/159 (59%), Gaps = 12/159 (7%)
Query: 129 PLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSL 188
PLW K+G+K TL+QV D H++KY E K+ L VG ++
Sbjct: 3 PLWTKDGQKHVVTLLQVQDCHVLKYTSKENCN-----------GKMATLSVGGKTVSRFR 51
Query: 189 YTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQ 248
++ G+PPK+ + F IT +A + PGTPL AAHFRP +++DV T+ +GFQ
Sbjct: 52 KATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQ 111
Query: 249 GVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GVMKRWGFKG PATHG TK+HRR G +A+G RV+PG
Sbjct: 112 GVMKRWGFKGQPATHGQTKTHRRPGAVATGD-IGRVWPG 149
>gi|194376318|dbj|BAG62918.1| unnamed protein product [Homo sapiens]
Length = 243
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 95/159 (59%), Gaps = 12/159 (7%)
Query: 129 PLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSL 188
PLW K+G+K TL+QV D H++KY E K+ L VG ++
Sbjct: 3 PLWTKDGQKHVVTLLQVQDCHVLKYTSKENCN-----------GKMATLSVGGKTVSRFR 51
Query: 189 YTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQ 248
++ G+PPK+ + F IT +A + PGTPL AAHFRP +++DV T+ +GFQ
Sbjct: 52 KATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQ 111
Query: 249 GVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GVMKRWGFKG PATHG TK+HRR G +A+G RV+PG
Sbjct: 112 GVMKRWGFKGQPATHGQTKTHRRPGAVATGD-IGRVWPG 149
>gi|393910530|gb|EJD75919.1| hypothetical protein LOAG_17004 [Loa loa]
Length = 410
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 113/201 (56%), Gaps = 15/201 (7%)
Query: 96 TYNTPL---KIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIK 152
++ TPL + E +P E T S R G++ + IG +P W +G + TL++ N +I
Sbjct: 88 SFKTPLCEIRQETDRP-EWTPESNRVGMLARKIGMFPQWGADGTRFLCTLLEFPRNLVIS 146
Query: 153 YIPPEEFKP-----NRKPY-RGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKK 206
+ PE + RK Y R P+ ++ VGA GDP+ +T Y F+ G P KK
Sbjct: 147 AVDPETYYRISMVGRRKAYGRYGPRWRI---TVGAVDGDPTKFTARYRATFERHGFPVKK 203
Query: 207 KLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVT 266
+ F++T DA++ PGT L HF+ +++ G T+D GFQG M RWGFKGMPA G T
Sbjct: 204 YMASFLVTEDAVVEPGTELHVCHFKVGQYITATGHTIDWGFQGGMHRWGFKGMPA-RGTT 262
Query: 267 KSHRRGGCIASGAGKARVYPG 287
KSHRR G I S G ARV PG
Sbjct: 263 KSHRRIGAIGS-KGDARVRPG 282
>gi|297286892|ref|XP_001115583.2| PREDICTED: 39S ribosomal protein L3, mitochondrial [Macaca mulatta]
Length = 243
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 94/159 (59%), Gaps = 12/159 (7%)
Query: 129 PLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSL 188
PLW K+GEK TL+QV D H++KY E K L VG ++
Sbjct: 3 PLWTKDGEKHVVTLLQVQDCHVLKYTSKENHN-----------GKTAALSVGGKTVSRFR 51
Query: 189 YTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQ 248
++ G+PPK+ + F IT +A + PGTPL AAHFRP +++DV T+ +GFQ
Sbjct: 52 KATPVLEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQ 111
Query: 249 GVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GV+KRWGFKG PATHG TK+HRR G +++G RV+PG
Sbjct: 112 GVVKRWGFKGQPATHGQTKTHRRPGALSTGD-IGRVWPG 149
>gi|58267640|ref|XP_570976.1| ribosomal large subunit assembly and maintenance-related protein
[Cryptococcus neoformans var. neoformans JEC21]
gi|134112043|ref|XP_775557.1| mitochondrial 54S ribosomal protein YmL9 [Cryptococcus neoformans
var. neoformans B-3501A]
gi|50258216|gb|EAL20910.1| hypothetical protein CNBE2710 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227210|gb|AAW43669.1| ribosomal large subunit assembly and maintenance-related protein,
putative [Cryptococcus neoformans var. neoformans JEC21]
Length = 308
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 99/176 (56%), Gaps = 12/176 (6%)
Query: 112 TTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPK 171
T + RTGLI + G LW +G + T++QV N ++++ PP P PY
Sbjct: 39 TPQTLRTGLIARKRGMTALWDADGRRWPVTVLQVDANQVVRHSPP----PPTSPYH---- 90
Query: 172 RKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFR 231
L +GA TK+ G FK +GV PK +L F ++ DA++P GT L+A HF
Sbjct: 91 ----TLQIGASPRREKTTTKQQLGHFKKAGVEPKYRLKEFQVSEDAVVPVGTELSAGHFV 146
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
P +F+DV+G+T+ +GFQGVMKR GF+G+ A+HG + HR G I RV PG
Sbjct: 147 PGQFVDVQGVTIGKGFQGVMKRHGFRGLKASHGTSVKHRSPGSIGQNQDPGRVIPG 202
>gi|308487608|ref|XP_003105999.1| hypothetical protein CRE_20298 [Caenorhabditis remanei]
gi|308254573|gb|EFO98525.1| hypothetical protein CRE_20298 [Caenorhabditis remanei]
Length = 403
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 122/223 (54%), Gaps = 10/223 (4%)
Query: 68 NLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQ 127
+L++ K +++V+ + A + + ++ T + I ++I SS+R GL+ + IG
Sbjct: 58 DLSQKTKNLLDDVIKKETLAASALARNDSQETNVAI-----IDIPHSSRRVGLVVRKIGM 112
Query: 128 YPLWMKNGEKCRTTLVQVVDNHIIKYIPPEE-FKPNRKPYRGEPKRK--LGCLLVGAESG 184
P W +G + T+++V +NH++ P+ +K + R R + + VGA +
Sbjct: 113 LPQWTNDGNRILCTVLEVDENHVVSVTSPDSWYKASAVGKRKAFNRHGPMWRVTVGAGND 172
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP+ YT Y F +GVP K+KL F++T DA+ G PL A HF + + G T+D
Sbjct: 173 DPTKYTLAYRRQFARAGVPTKEKLGCFLVTEDALPHAGQPLDARHFAVGQHVTATGKTID 232
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GFQG M RWG +G P T TKSHRR G + S G AR++PG
Sbjct: 233 WGFQGGMHRWGMRGQP-TRRTTKSHRRIGSVGS-VGDARIWPG 273
>gi|432882439|ref|XP_004074031.1| PREDICTED: 39S ribosomal protein L3, mitochondrial-like [Oryzias
latipes]
Length = 314
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 129/280 (46%), Gaps = 65/280 (23%)
Query: 8 RLALSNCNRILSRKSNIFETPFLFGCSEVINIRQKKVWIRPPRVKYPLWFLQKERAEYIE 67
R L +R + ++ + + L GC IR VK P WF E
Sbjct: 7 RFVLQRGSRFILSRTTVESSSQLVGC-----IRT---------VKIPTWFE--------E 44
Query: 68 NLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQ 127
+LT +N+ ++ + A + PLK EP E T S+R GL+ +G
Sbjct: 45 HLTEDNQKYMRHSM-----AEEYRRQTAERLCPLKDEPWPRHEWTEGSRRVGLVAIKLGM 99
Query: 128 YPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPS 187
P+W K+GE+ T++QV D H+I+ + EE+ + L VG ++ P
Sbjct: 100 APIWTKSGERHAVTMLQVQDCHVIRCMSKEEYDGHS-----------AALAVGGKNVSPF 148
Query: 188 LYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGF 247
YC + LC GTPL AAHFRP +++DV ++ +GF
Sbjct: 149 -----YCFV-----------LCE-----------GTPLYAAHFRPGQYVDVTAKSIGKGF 181
Query: 248 QGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
QGVMKRWGFKG PA+HG TK+HRR G G A+V+ G
Sbjct: 182 QGVMKRWGFKGQPASHGQTKTHRRPGASGPGGDPAKVFKG 221
>gi|405120780|gb|AFR95550.1| LSU ribosomal protein L3P [Cryptococcus neoformans var. grubii H99]
Length = 308
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 101/183 (55%), Gaps = 12/183 (6%)
Query: 105 PLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRK 164
P P + T + RTGLI + G LW +G + T++QV N ++++ PP P
Sbjct: 32 PSAPGKWTPQTLRTGLIARKRGMTALWDADGRRWPVTVLQVDANQVVRHSPP----PPTS 87
Query: 165 PYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTP 224
PY L +GA TK+ G F+ +GV PK +L F ++ +A++P GT
Sbjct: 88 PYH--------TLQIGASPRREKTTTKQLLGHFRKAGVEPKYRLKEFQVSENAVVPVGTE 139
Query: 225 LTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARV 284
L+A HF P +F+DV+G T+ +GFQGVMKR GF+G+ A+HG + HR G I RV
Sbjct: 140 LSAGHFVPGQFVDVQGATIGKGFQGVMKRHGFRGLKASHGTSVKHRSPGSIGQNQDPGRV 199
Query: 285 YPG 287
PG
Sbjct: 200 IPG 202
>gi|291230696|ref|XP_002735302.1| PREDICTED: mitochondrial ribosomal protein L3-like [Saccoglossus
kowalevskii]
Length = 349
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 91/173 (52%), Gaps = 16/173 (9%)
Query: 99 TPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEE 158
+PLK EP + T SKR G+I +G PLW K GE+ + TL+Q+ D +I YIPPEE
Sbjct: 83 SPLKNEPWEAGNWTQHSKRCGVIAVKLGMMPLWTKQGERLQCTLLQLQDCCVIDYIPPEE 142
Query: 159 FKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAM 218
+ K G L VGA++ P K Y LFK
Sbjct: 143 -----------TQEKYGYLYVGAKNASPLYVGKAYADLFKXXXXXXXXXX-----XXXXX 186
Query: 219 LPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRR 271
TPL AAHFRP ++DV ++ GFQGVMKRWG KG PA+HG TK+HR+
Sbjct: 187 XXKRTPLYAAHFRPGMYVDVTARSIGHGFQGVMKRWGMKGQPASHGATKTHRK 239
>gi|115534155|ref|NP_498045.2| Protein MRPS-18C [Caenorhabditis elegans]
gi|94730420|sp|P49404.3|RM03_CAEEL RecName: Full=Putative 39S ribosomal protein L3, mitochondrial
gi|351058296|emb|CCD65730.1| Protein MRPS-18C [Caenorhabditis elegans]
Length = 403
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 119/222 (53%), Gaps = 10/222 (4%)
Query: 69 LTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQY 128
+++ K +E V+ + A + + + T + + ++I SS+R GL+ + IG
Sbjct: 59 ISQGTKNLLETVIEKETLAASTIAFQNSQETNVSV-----VDIPDSSRRVGLVVRKIGML 113
Query: 129 PLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL---VGAESGD 185
P W G + T+++V +NH++ PE + + + + + G + VGA + D
Sbjct: 114 PQWTNEGNRILCTVLEVDENHVVSITSPEAWYKSSAVGKRKAFNRHGPMWRVTVGAGNDD 173
Query: 186 PSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDR 245
P+ YT Y F +G+P K+KL F++T DA+ G PL A HF +++ G T+D
Sbjct: 174 PTKYTLGYRRQFVRAGIPVKEKLGCFLVTEDALPSAGQPLDARHFGVGQYVTATGKTIDW 233
Query: 246 GFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GFQG M RWG +G P T TKSHRR G + S G AR++PG
Sbjct: 234 GFQGGMHRWGMRGQP-TRRTTKSHRRIGSVGS-VGDARIWPG 273
>gi|170596208|ref|XP_001902682.1| Mitochondrial 39S ribosomal protein L3 [Brugia malayi]
gi|158589507|gb|EDP28470.1| Mitochondrial 39S ribosomal protein L3, putative [Brugia malayi]
Length = 424
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 103/195 (52%), Gaps = 19/195 (9%)
Query: 110 EITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGE 169
E T S R G++ + IG +P W +G + TL++ N +I I PE + R +
Sbjct: 104 EWTPESNRIGMLARKIGMFPQWAVDGTRFLCTLLEFPKNLVISAIDPETYYRISMVGRRK 163
Query: 170 PKRKLGC---LLVGAESGDPSLYTKEYCGLFKN--------------SGVPPKKKLCRFI 212
+ G + VGA GDP+ +T Y F+ SG P KK + F+
Sbjct: 164 AYGRYGARWRVTVGAVDGDPTKFTARYRATFERHGVNFVAVFIFLILSGFPVKKHIASFL 223
Query: 213 ITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRG 272
+T DA++ PGT L HF+ +++ + G T+D GFQG M RWGFKGMPA G TKSHRR
Sbjct: 224 VTEDAVVQPGTELHVCHFKVGQYITITGHTIDWGFQGGMHRWGFKGMPA-RGTTKSHRRI 282
Query: 273 GCIASGAGKARVYPG 287
G I S G ARV PG
Sbjct: 283 GAIGS-KGDARVRPG 296
>gi|403418029|emb|CCM04729.1| predicted protein [Fibroporia radiculosa]
Length = 314
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 99/178 (55%), Gaps = 10/178 (5%)
Query: 110 EITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGE 169
E T +S RTGLI + G +W +G + T++Q+ + + I + + ++ Y
Sbjct: 40 EWTPTSIRTGLIARKRGMTVMWDDHGARFPVTVLQLENCQVTANI--QTVRKDQSEYH-- 95
Query: 170 PKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAH 229
+ V A TK+ G FK +GVPPK+ + F +TPDA +P GT L+A H
Sbjct: 96 ------AVQVAASDKREKTTTKQMLGHFKKAGVPPKRIVKEFPVTPDAHVPVGTTLSAIH 149
Query: 230 FRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F P +F+DV ++ +GFQG MKRW FKG+ A+HGV+ SHR G I + RV+PG
Sbjct: 150 FVPGQFVDVIANSIGKGFQGTMKRWNFKGLRASHGVSVSHRSAGAIGAHQDPGRVWPG 207
>gi|268574488|ref|XP_002642221.1| Hypothetical protein CBG18195 [Caenorhabditis briggsae]
Length = 402
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 116/222 (52%), Gaps = 10/222 (4%)
Query: 69 LTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQY 128
+++ K +E V+ + + + ++ I +I SS+R GL+ + IG
Sbjct: 59 ISKVTKTLLETVIEKETQVASTFANHASHQAATSIA-----DIPASSRRVGLVVRKIGML 113
Query: 129 PLWMKNGEKCRTTLVQVVDNHIIKYIPPEE-FKPNRKPYRGEPKRK--LGCLLVGAESGD 185
P W K G + T+++V +NH++ P+ +K + R R + + VGA + D
Sbjct: 114 PQWTKEGGRILCTILEVDENHVVGITSPDSWYKASAIGKRKAFNRHGPMWRVTVGATNQD 173
Query: 186 PSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDR 245
P+ YT Y F +GVP K+ L F++T DA+ G PL A HF +++ G T+D
Sbjct: 174 PTNYTSAYRKKFTRAGVPVKETLGCFLVTEDALPLLGQPLDARHFEVGQYVTATGKTIDW 233
Query: 246 GFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GFQG M RWG +G P T TKSHRR G + S G AR++PG
Sbjct: 234 GFQGGMHRWGMRGQP-TRRTTKSHRRIGSVGS-VGDARIWPG 273
>gi|341896104|gb|EGT52039.1| hypothetical protein CAEBREN_16123 [Caenorhabditis brenneri]
Length = 403
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 10/222 (4%)
Query: 69 LTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQY 128
+++ K +E+V+ + A + + + T + I +I +S+R GL+ + IG
Sbjct: 59 MSQGTKNLLEQVIEKETLANSTFAHQSSQETSVTIG-----DIPETSRRVGLVVRKIGML 113
Query: 129 PLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL---LVGAESGD 185
P W G + T+++V +NH++ PE + + + + + G + VGA + D
Sbjct: 114 PQWTNEGTRILCTVLEVNENHVVSITSPEMWYKSSAVGKRKAFNRHGPMWRVTVGAGNDD 173
Query: 186 PSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDR 245
P+ YT Y F +G+P K+KL F++T DA+ G L A HF +++ G T+D
Sbjct: 174 PTKYTLAYRRQFAKAGIPTKEKLGCFLVTEDALPTAGQALDARHFGVGQYITATGKTIDW 233
Query: 246 GFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GFQG M RWG +G P T TKSHRR G + S G AR++PG
Sbjct: 234 GFQGGMHRWGMRGQP-TRRTTKSHRRIGSVGS-VGDARIWPG 273
>gi|198423016|ref|XP_002125651.1| PREDICTED: similar to mitochondrial ribosomal protein L3 [Ciona
intestinalis]
Length = 392
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 111/215 (51%), Gaps = 16/215 (7%)
Query: 62 RAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLI 121
R + +LT NK+F++E+ +D ++ + +PLK L SKR G +
Sbjct: 85 RWHWDYDLTDENKSFLKEISND----GNIEMLQQARQSPLKDSDWPVLPWQPGSKRCGAV 140
Query: 122 GKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGA 181
G +G +P+W K+G TL+Q+ D H+IKY EE+ K +++G
Sbjct: 141 GIKLGVHPIWFKDGTYANCTLIQIQDCHVIKYFSKEEYNT-----------KTAAVIIGG 189
Query: 182 ESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGL 241
++ P ++Y + +GVP K K RF+I+ +A L PGT +TA HF+P +F+D
Sbjct: 190 KNASPFYKNEKYHEFCREAGVPVKAKCFRFLISENAALKPGTEITAMHFKPGQFVDCTAQ 249
Query: 242 TVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIA 276
++ GFQGV++RW F G A K RR G I
Sbjct: 250 SIGYGFQGVIQRWHFAGGHARKD-KKWMRRPGSIG 283
>gi|392578474|gb|EIW71602.1| hypothetical protein TREMEDRAFT_28317 [Tremella mesenterica DSM
1558]
Length = 318
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 100/183 (54%), Gaps = 12/183 (6%)
Query: 105 PLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRK 164
P + T ++RTG I + G +W ++G++ T++Q+ +I++ PP
Sbjct: 43 PATQAKWTPYTQRTGAIARKRGMMSVWDQDGKRWPVTVLQIDSCQVIRHSPPPA------ 96
Query: 165 PYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTP 224
L L +GA K G FK++GVPPK +L + +T DA+LP GT
Sbjct: 97 ------NNHLHSLQLGASPRAERTTPKPLLGHFKSAGVPPKYRLQEYQVTSDAVLPVGTE 150
Query: 225 LTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARV 284
L+A HF P +++DV G+++ +GFQGVMKR GF+G+ A+HGV+ HR GG RV
Sbjct: 151 LSAGHFVPGQYVDVTGVSIGKGFQGVMKRHGFRGLSASHGVSLKHRSGGSTGQNQDPGRV 210
Query: 285 YPG 287
PG
Sbjct: 211 IPG 213
>gi|349805849|gb|AEQ18397.1| putative mitochondrial ribosomal protein l3 [Hymenochirus curtipes]
Length = 158
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 87/143 (60%), Gaps = 13/143 (9%)
Query: 131 WMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYT 190
W K+G+K T++QV D H+IKY P EF K L+VG ++ P T
Sbjct: 1 WTKSGDKHAVTMLQVRDCHVIKYTPKSEFD-----------GKSAALIVGGKNVSPFYKT 49
Query: 191 KEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGV 250
+ ++ +GVP +K F ++ +A+L PGTPL AAHFRP + +DV T+ +GFQGV
Sbjct: 50 ESTMEIYNEAGVP--RKTSVFKVSDNAILKPGTPLYAAHFRPGQVVDVTAKTIGKGFQGV 107
Query: 251 MKRWGFKGMPATHGVTKSHRRGG 273
MKRWG+KG PA+HG TK+ RR G
Sbjct: 108 MKRWGYKGQPASHGQTKTRRRPG 130
>gi|168018029|ref|XP_001761549.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687233|gb|EDQ73617.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 258
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 94/173 (54%), Gaps = 13/173 (7%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
S RTG+I G +W K G + T++ V DNH+++ + EE +
Sbjct: 12 SFRTGVIAVKCGMTAIWDKWGARVPMTVLWVNDNHVVQ-VKTEETDGHF----------- 59
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
L +GA P TK G F+ +GVP K+ L F +T DA+LP GT L+ HFRP +
Sbjct: 60 -ALQIGAGQRKPKQLTKPELGHFRAAGVPLKQHLAEFPVTEDALLPLGTELSVRHFRPGQ 118
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
++D+ G+T +GFQG MKRWGF GMPA+HG + SHR G +V+ G
Sbjct: 119 YVDIAGITTGKGFQGGMKRWGFAGMPASHGASLSHRSLGSTGGRQDPGKVFKG 171
>gi|302773854|ref|XP_002970344.1| hypothetical protein SELMODRAFT_267426 [Selaginella moellendorffii]
gi|300161860|gb|EFJ28474.1| hypothetical protein SELMODRAFT_267426 [Selaginella moellendorffii]
Length = 279
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 98/186 (52%), Gaps = 22/186 (11%)
Query: 108 PLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHII--KYIPPEEFKPNRKP 165
P + +S+RTGLI G +W K G + T++ DN ++ K + E F
Sbjct: 19 PKPMDRTSRRTGLIAVKCGMTAVWDKWGRRIPITVLWADDNQVVQVKTVDHEGFN----- 73
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
L VG P + G F++ GVP K+KL F ++ DA+LP GTPL
Sbjct: 74 ----------ALQVGCGQKKPKQLSIPELGHFRSKGVPIKRKLKEFQVSEDALLPVGTPL 123
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
T HF P +FLDV G+++ +GFQG MKRWGF GMPA+HG + SHR + GA R
Sbjct: 124 TVRHFVPGQFLDVTGVSIGKGFQGPMKRWGFAGMPASHGASLSHR-----SHGATGGRKS 178
Query: 286 PGGVLQ 291
PG V +
Sbjct: 179 PGKVFK 184
>gi|196003476|ref|XP_002111605.1| hypothetical protein TRIADDRAFT_3973 [Trichoplax adhaerens]
gi|190585504|gb|EDV25572.1| hypothetical protein TRIADDRAFT_3973, partial [Trichoplax
adhaerens]
Length = 250
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 98/175 (56%), Gaps = 14/175 (8%)
Query: 114 SSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRK 173
S+RTGLIG +G P+WMK+G + TL+++ H++ + + K
Sbjct: 11 GSRRTGLIGVKLGMMPMWMKDGTRVPVTLIKIQQCHVLHN-------------KTKAKDG 57
Query: 174 LGCLLVGAESGDPSLYTKE-YCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRP 232
+ VGA LY + G F +GV PK+K+ F ++ DA++ GT L A HF P
Sbjct: 58 YCAVQVGAVDRLKLLYVRRAQLGHFARAGVNPKRKVWEFKVSDDALILRGTLLHAMHFVP 117
Query: 233 REFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+++DV+ T+ +GFQGVMK+ G KG PATHGV+ +HR+ G G R++PG
Sbjct: 118 GQYVDVKAKTIGKGFQGVMKKHGMKGQPATHGVSLTHRKMGATGGGQEPGRIWPG 172
>gi|389748698|gb|EIM89875.1| mitochondrial 50S ribosomal protein L3 [Stereum hirsutum FP-91666
SS1]
Length = 314
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 100/189 (52%), Gaps = 10/189 (5%)
Query: 108 PLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYR 167
P + T +S RTGLI + G +W +G + T++Q+ + + + + + N+ Y
Sbjct: 38 PSKWTPNSVRTGLIARKRGMTAMWDDHGARFPVTVLQLENCQVTANV--KTVRRNKTEYH 95
Query: 168 GEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTA 227
+ V A TK+ G FK +GVPPK+ + F +TPDA +P GT L+A
Sbjct: 96 --------AVQVAASDRPAKTATKQMLGHFKKAGVPPKRIVKEFPVTPDAHVPVGTTLSA 147
Query: 228 AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
HF P +F+DV ++ +GFQG MKRWGFKG A+HG + SHR G RV+PG
Sbjct: 148 VHFVPGQFVDVVSNSIGKGFQGGMKRWGFKGQRASHGASLSHRSIGSTGGHQDPGRVWPG 207
Query: 288 GVLQRGLKC 296
+ + C
Sbjct: 208 KKMPGHMGC 216
>gi|389609845|dbj|BAM18534.1| mitochondrial ribosomal protein L3 [Papilio xuthus]
Length = 179
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/84 (65%), Positives = 65/84 (77%)
Query: 204 PKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATH 263
PK+ L RF+++P A LP GTPL A HFR + +DVR T+DRGFQGVMKRWGF GMPA+H
Sbjct: 3 PKRHLFRFMVSPHAALPTGTPLFATHFRVGDHIDVRAKTLDRGFQGVMKRWGFSGMPASH 62
Query: 264 GVTKSHRRGGCIASGAGKARVYPG 287
GVTK+HRR G I G KARV+PG
Sbjct: 63 GVTKTHRRPGNIGGGGEKARVWPG 86
>gi|401887463|gb|EJT51451.1| ribosomal large subunit assembly and maintenance-related protein
[Trichosporon asahii var. asahii CBS 2479]
gi|406699886|gb|EKD03079.1| ribosomal large subunit assembly and maintenance-related protein
[Trichosporon asahii var. asahii CBS 8904]
Length = 311
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 95/176 (53%), Gaps = 18/176 (10%)
Query: 112 TTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPK 171
T +KRTG+I + G LW +NG + T++Q+ ++++ PP K
Sbjct: 49 TPFTKRTGVIARKRGMTALWDQNGRRWPVTVLQLDKVQVVRHSPPP----------ANDK 98
Query: 172 RKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFR 231
+ L L +GA P T + G F+ +GV PK KL F +TP+A+LP GT L+A HF
Sbjct: 99 KGLHSLQIGASDRRPKTVTAQQLGHFRAAGVNPKYKLQEFRVTPNAVLPVGTELSAGHFV 158
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
P +++D GFQGVMKR GF+G+ A+HGV+ +HR G RV PG
Sbjct: 159 PGQYVD--------GFQGVMKRHGFRGLKASHGVSLTHRSAGSTGQHQDPGRVLPG 206
>gi|297834662|ref|XP_002885213.1| hypothetical protein ARALYDRAFT_479224 [Arabidopsis lyrata subsp.
lyrata]
gi|297331053|gb|EFH61472.1| hypothetical protein ARALYDRAFT_479224 [Arabidopsis lyrata subsp.
lyrata]
Length = 323
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 99/195 (50%), Gaps = 13/195 (6%)
Query: 93 GIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIK 152
G + P +I + E++ SS+RTG+I G LW K G + +++ V DN I+
Sbjct: 51 GSDIIGAPNRIIEAKQGEMSQSSRRTGIIAVKCGMTALWDKWGARVPISILWVDDN-IVS 109
Query: 153 YIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFI 212
+ E K + L +G P +K G F+ GVP K+KL F
Sbjct: 110 QVKTVE------------KEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFP 157
Query: 213 ITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRG 272
+T DA+LP GT L HF P +++DV G+T +GFQG MKR GF GMP +HG + SHR G
Sbjct: 158 VTEDALLPVGTSLGVRHFVPGQYVDVTGITRGKGFQGCMKRHGFSGMPGSHGASLSHRSG 217
Query: 273 GCIASGAGKARVYPG 287
G +V+ G
Sbjct: 218 GSTGQRDAPGKVFKG 232
>gi|413947051|gb|AFW79700.1| 50S ribosomal protein L3-2 [Zea mays]
Length = 318
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 99/189 (52%), Gaps = 20/189 (10%)
Query: 114 SSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRK 173
+S+RTG+IG G +W K G K T++ V DN + + E K
Sbjct: 68 TSRRTGVIGVKCGMSAMWDKWGAKVPITVLWVDDNVVTQVKTAE-------------KEG 114
Query: 174 LGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPR 233
L +GA TK G F+ GVP K+KL F +T DA+LP GT +T HF P
Sbjct: 115 FFALQLGAGQKKEKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTSITVRHFVPG 174
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY-----PG- 287
+F+DV G+T +GF GVMKR+GF GMPA+HG + +HR GG RV+ PG
Sbjct: 175 QFVDVTGITKGKGFAGVMKRYGFGGMPASHGTSLAHRSGGSTGQRDAPGRVFKNRKMPGR 234
Query: 288 -GVLQRGLK 295
G +QR +K
Sbjct: 235 MGGVQRTVK 243
>gi|194689948|gb|ACF79058.1| unknown [Zea mays]
Length = 254
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 91/172 (52%), Gaps = 13/172 (7%)
Query: 114 SSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRK 173
+S+RTG+IG G +W K G K T++ V DN + + E K
Sbjct: 4 TSRRTGVIGVKCGMSAMWDKWGAKVPITVLWVDDNVVTQVKTAE-------------KEG 50
Query: 174 LGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPR 233
L +GA TK G F+ GVP K+KL F +T DA+LP GT +T HF P
Sbjct: 51 FFALQLGAGQKKEKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTSITVRHFVPG 110
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
+F+DV G+T +GF GVMKR+GF GMPA+HG + +HR GG RV+
Sbjct: 111 QFVDVTGITKGKGFAGVMKRYGFGGMPASHGTSLAHRSGGSTGQRDAPGRVF 162
>gi|18401521|ref|NP_566579.1| 50S ribosomal protein L3-2 [Arabidopsis thaliana]
gi|42559534|sp|Q9LRN8.1|RK3B_ARATH RecName: Full=50S ribosomal protein L3-2, chloroplastic; Flags:
Precursor
gi|11994685|dbj|BAB02923.1| 50S ribosomal protein L3 [Arabidopsis thaliana]
gi|332642436|gb|AEE75957.1| 50S ribosomal protein L3-2 [Arabidopsis thaliana]
Length = 324
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 95/178 (53%), Gaps = 13/178 (7%)
Query: 110 EITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGE 169
E+++ SKRTG+I G LW K G++ +++ V DN I+ + E
Sbjct: 69 EMSSRSKRTGIIAVKCGMTALWDKWGKRIPISILWVDDN-IVSQVKTVE----------- 116
Query: 170 PKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAH 229
K + L +G P +K G F+ GVP K+KL F +T DA+LP GT L H
Sbjct: 117 -KEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGVRH 175
Query: 230 FRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F P +++DV G+T +GFQG MKR GF GMPA+HG + SHR GG +V+ G
Sbjct: 176 FVPGQYVDVTGITRGKGFQGCMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKG 233
>gi|449547326|gb|EMD38294.1| hypothetical protein CERSUDRAFT_82556 [Ceriporiopsis subvermispora
B]
Length = 314
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 96/176 (54%), Gaps = 10/176 (5%)
Query: 112 TTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPK 171
T +S RTGLI + G +W +G + T++Q+ + + N K R +
Sbjct: 42 TANSVRTGLIARKRGMTAMWDDHGARYPVTVLQLENCQVTA---------NVKTVRDD-G 91
Query: 172 RKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFR 231
+ + V A TK G FK +GVPPK+ + F +TPDA +P GT L+A HF
Sbjct: 92 SEYHAVQVAASDRPEKTTTKPMLGHFKKAGVPPKRVVKEFPVTPDAHVPVGTTLSAIHFV 151
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
P +++DV ++ +G+QGVMKRW FKG+ A+HGV+ SHR G + RV+PG
Sbjct: 152 PGQYVDVIANSIGKGYQGVMKRWNFKGLRASHGVSVSHRSAGATGAHQDPGRVWPG 207
>gi|302769378|ref|XP_002968108.1| hypothetical protein SELMODRAFT_145395 [Selaginella moellendorffii]
gi|300163752|gb|EFJ30362.1| hypothetical protein SELMODRAFT_145395 [Selaginella moellendorffii]
Length = 255
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 95/180 (52%), Gaps = 22/180 (12%)
Query: 114 SSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHII--KYIPPEEFKPNRKPYRGEPK 171
+S+RTGLI G +W K G + T++ DN ++ K + E F
Sbjct: 4 TSRRTGLIAVKCGMTAVWDKWGRRIPITVLWADDNQVVQVKTVDHEGFN----------- 52
Query: 172 RKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFR 231
L VG P + G F++ GVP K+KL F ++ DA+LP GT LT HF
Sbjct: 53 ----ALQVGCGQKKPKQLSIPELGHFRSKGVPIKRKLKEFQVSEDALLPVGTALTVRHFV 108
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQ 291
P +FLDV G+++ +GFQG MKRWGF GMPA+HG + SHR + GA R PG V +
Sbjct: 109 PGQFLDVTGVSIGKGFQGPMKRWGFAGMPASHGASLSHR-----SHGATGGRKSPGKVFK 163
>gi|356544046|ref|XP_003540466.1| PREDICTED: 50S ribosomal protein L3-2, chloroplastic-like [Glycine
max]
Length = 299
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 95/183 (51%), Gaps = 14/183 (7%)
Query: 103 IEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPN 162
IEP +P +T +SKRTGLI G LW K G + T++ V DN + + PE
Sbjct: 38 IEP-KPSAMTPNSKRTGLIAVKCGMSALWDKWGARIPITVLWVDDNIVSQIKTPE----- 91
Query: 163 RKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPG 222
K L +G TK G F+ GVP K+KL F +T DA+LP G
Sbjct: 92 --------KEGFCALQIGCGHKKDKHLTKPEVGHFRAQGVPMKRKLREFPVTEDALLPVG 143
Query: 223 TPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKA 282
T L HF P +F+D+ G+T +GFQGVMKR GF G PA+HG + +HR G +
Sbjct: 144 TSLNVRHFVPGQFVDISGITKGKGFQGVMKRHGFSGGPASHGASLAHRTLGSVGHLTSHG 203
Query: 283 RVY 285
+V+
Sbjct: 204 KVF 206
>gi|170088428|ref|XP_001875437.1| mitochondrial 54S ribosomal protein YmL9 [Laccaria bicolor
S238N-H82]
gi|164650637|gb|EDR14878.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 315
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 101/199 (50%), Gaps = 14/199 (7%)
Query: 89 AVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDN 148
++ S + +T L + P + T +S RTG+I + G LW G + T++Q+ +
Sbjct: 24 SIVSNAASTSTSLNVAP----KWTPNSIRTGVIARKRGMTALWNDQGVRYPVTVLQLENC 79
Query: 149 HIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKL 208
+ I + N Y + V A T + G F+ + VPPK+ +
Sbjct: 80 QVTANI--RSTRRNHTEYH--------AIQVAASDKPAKGTTNQMLGHFRKAAVPPKRIV 129
Query: 209 CRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKS 268
F ITPDA +P GT L+A HF P +F+DV ++ +GFQG MKRWGF G+ A+HGV+ S
Sbjct: 130 REFPITPDAHIPVGTTLSAVHFVPGQFVDVVANSIGKGFQGGMKRWGFHGLAASHGVSVS 189
Query: 269 HRRGGCIASGAGKARVYPG 287
HR G R++PG
Sbjct: 190 HRSSGSTGQHQDPGRIFPG 208
>gi|336364933|gb|EGN93286.1| hypothetical protein SERLA73DRAFT_189845 [Serpula lacrymans var.
lacrymans S7.3]
gi|336377503|gb|EGO18665.1| hypothetical protein SERLADRAFT_480976 [Serpula lacrymans var.
lacrymans S7.9]
Length = 316
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 93/174 (53%), Gaps = 10/174 (5%)
Query: 114 SSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRK 173
SS RTGLI + G +W +G + T++Q+ + + I +P+R Y
Sbjct: 46 SSLRTGLIARKRGMTAMWDDHGARFPVTVLQLENCQVTANI--VHVRPDRSEYH------ 97
Query: 174 LGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPR 233
+ V A T++ G F + VPPK + F +TPDA +P GT +A HF P
Sbjct: 98 --AVQVAASDRPKRTTTRQMRGHFAKARVPPKYIVKEFPVTPDAHVPVGTTFSAVHFVPG 155
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+F+DV ++ +GFQGVMKRW FKG+ A+HGV+ SHR G + RV+PG
Sbjct: 156 QFVDVIANSIGKGFQGVMKRWNFKGLRASHGVSVSHRSAGATGAHQDPGRVWPG 209
>gi|255556584|ref|XP_002519326.1| 50S ribosomal protein L3, putative [Ricinus communis]
gi|223541641|gb|EEF43190.1| 50S ribosomal protein L3, putative [Ricinus communis]
Length = 311
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 95/186 (51%), Gaps = 13/186 (6%)
Query: 102 KIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKP 161
+I +P +T SKRTG+I G LW K GE+ T++ V DN + + E
Sbjct: 50 RILEAKPGIMTPHSKRTGIIALKCGMTALWDKWGERVPITVLWVDDNIVTQVKTVE---- 105
Query: 162 NRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPP 221
K + L +G TK G F+ VP K+KL F +T DA++P
Sbjct: 106 ---------KEGIFALQIGYGHKKAKHLTKPEVGHFRAHNVPLKRKLREFPVTEDALIPV 156
Query: 222 GTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK 281
GT L HF P +F+D+ G+T +GFQG MKR GFKGMPATHG + SHR GG
Sbjct: 157 GTSLGVRHFVPGQFVDITGITRGKGFQGGMKRHGFKGMPATHGASLSHRSGGSTGQRDAP 216
Query: 282 ARVYPG 287
+V+ G
Sbjct: 217 GKVFKG 222
>gi|307136201|gb|ADN34039.1| 50S ribosomal protein l3 [Cucumis melo subsp. melo]
Length = 328
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 98/181 (54%), Gaps = 13/181 (7%)
Query: 107 QPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPY 166
+P ++++S+RTG+I G LW K G + T++ V DN I+ + E
Sbjct: 69 KPGTMSSNSRRTGVIAVKCGMSALWDKWGARIPITVLWVDDN-IVSQVKTIE-------- 119
Query: 167 RGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLT 226
K + L +G +K G F+ GVP K+KL F ++ DA+LP GT +
Sbjct: 120 ----KEGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLKEFPVSQDALLPVGTEIG 175
Query: 227 AAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYP 286
A HF P +++DV G++ +GFQGVMKR GFKGMPA+HG + SHR GG +V+
Sbjct: 176 ARHFVPGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFK 235
Query: 287 G 287
G
Sbjct: 236 G 236
>gi|392566939|gb|EIW60114.1| mitochondrial 50S ribosomal protein L3 [Trametes versicolor
FP-101664 SS1]
Length = 315
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 94/171 (54%), Gaps = 10/171 (5%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTGLI + G +W +G + T++Q+ + + I + + ++ Y
Sbjct: 47 RTGLIARKRGMTVMWDNHGVRFPVTVLQLENCQVTANI--KTVRDDQSEYH--------A 96
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ V A TK+ G F +GVPPK+ + F +TPDA +P GT L+A HF P +F+
Sbjct: 97 VQVAASDRPLKNTTKQMLGHFSKAGVPPKRIVKEFPVTPDAHVPIGTTLSAVHFVPGQFV 156
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV ++ +GFQG MKRW FKG+ A+HGV+ SHR G I + RV+PG
Sbjct: 157 DVIAKSLGKGFQGTMKRWNFKGLRASHGVSVSHRAAGSIGAHQDPGRVWPG 207
>gi|212274775|ref|NP_001130722.1| uncharacterized protein LOC100191826 [Zea mays]
gi|195627984|gb|ACG35822.1| 50S ribosomal protein L3-2 [Zea mays]
Length = 318
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 90/172 (52%), Gaps = 13/172 (7%)
Query: 114 SSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRK 173
+S+RTG+IG G +W K G K T++ V DN + + E K
Sbjct: 68 TSRRTGVIGVKCGMSAMWDKWGAKVPITVLWVDDNVVTQVKTAE-------------KEG 114
Query: 174 LGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPR 233
L +GA TK G F+ GVP K+KL F +T DA+LP GT +T HF P
Sbjct: 115 FFALQLGAGQKKEKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTSITVRHFVPG 174
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
+F+DV G+T +GF GVMKR+GF G PA+HG + +HR GG RV+
Sbjct: 175 QFVDVTGITKGKGFAGVMKRYGFGGXPASHGTSLAHRSGGSTGQRDAPGRVF 226
>gi|353239501|emb|CCA71410.1| related to MRPL9-mitochondrial ribosomal protein, large subunit
[Piriformospora indica DSM 11827]
Length = 378
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 95/180 (52%), Gaps = 9/180 (5%)
Query: 108 PLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYR 167
P E T S+R GLI G +W + G + T++QV DN + I NR PYR
Sbjct: 70 PREWTPKSRRVGLIAVKKGMTAIWDEKGIRVPVTVLQVEDNQVTANILTVRSG-NRPPYR 128
Query: 168 GEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTA 227
+ +GA + P G F+ +GVP K+ + F ++ DA LP GT L+A
Sbjct: 129 --------AVQIGARNISPEKAHIGMRGHFRKAGVPCKQYVKEFEVSEDAHLPLGTALSA 180
Query: 228 AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
HF P +++D++ T+ +GFQGVMKRWGF G A+HG + +HR G RV+PG
Sbjct: 181 IHFVPGQYVDIQATTMGKGFQGVMKRWGFSGGTASHGNSLAHRTPGSTGQHQDPGRVWPG 240
>gi|392595772|gb|EIW85095.1| mitochondrial 50S ribosomal protein L3 [Coniophora puteana
RWD-64-598 SS2]
Length = 328
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 97/183 (53%), Gaps = 10/183 (5%)
Query: 105 PLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRK 164
P+ + T +S RTG+I + G LW + G + T++Q+ + + + + +P+R
Sbjct: 48 PVSSGKWTPNSIRTGVIARKRGMTALWDEYGARVPVTVLQLENCQVTRNV--VHVRPDRS 105
Query: 165 PYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTP 224
Y + VGA T + G F +GVP K + F +TPDA +P GT
Sbjct: 106 EYH--------AVQVGASDRADRTTTHQMQGHFAAAGVPCKYAVREFPVTPDAHVPVGTT 157
Query: 225 LTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARV 284
L+A HF P +++D+ ++ +GFQG MKRW FKG+ A+HGV+ SHR G RV
Sbjct: 158 LSAMHFVPGQYVDIIANSIGKGFQGTMKRWNFKGLRASHGVSVSHRSAGSTGQHQDPGRV 217
Query: 285 YPG 287
+PG
Sbjct: 218 WPG 220
>gi|225432181|ref|XP_002268657.1| PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Vitis
vinifera]
gi|297736812|emb|CBI26013.3| unnamed protein product [Vitis vinifera]
Length = 307
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Query: 107 QPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPY 166
+P ++ +SKRTG I G LW K G + T++ + DN I+ + E
Sbjct: 49 KPGVMSPNSKRTGAIAVKCGMSALWDKWGARVPITVLWLDDN-IVSQVKTFE-------- 99
Query: 167 RGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLT 226
K L L VG TK G F+ GVP K+KL F +T DA+LP GT +
Sbjct: 100 ----KEGLNALQVGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIG 155
Query: 227 AAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYP 286
HF P +++DV G+T +GFQG MKRWGFKGMPA+HG + SHR G +V+
Sbjct: 156 VRHFVPGQYVDVTGITRGKGFQGGMKRWGFKGMPASHGASLSHRSIGSTGQRDAPGKVFK 215
Query: 287 G 287
G
Sbjct: 216 G 216
>gi|395333697|gb|EJF66074.1| mitochondrial 50S ribosomal protein L3 [Dichomitus squalens
LYAD-421 SS1]
Length = 315
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 94/176 (53%), Gaps = 10/176 (5%)
Query: 112 TTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPK 171
T S RTGLI + G +W G + T++Q+ + + N + R E +
Sbjct: 42 TPKSVRTGLIARKRGMTVMWDSYGVRYPVTVLQLENCQVTA---------NVRTVR-EDQ 91
Query: 172 RKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFR 231
+ + V A TK+ G F +GVPPK+ + F +TPDA +P GT +A HF
Sbjct: 92 SEYHAVQVAASDRPAKNVTKQMLGHFDRAGVPPKRIVKEFPVTPDAHVPVGTTFSAIHFV 151
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
P +++DV ++ +GFQG MKRW FKG+ A+HGV+ SHR G I + RV+PG
Sbjct: 152 PGQYVDVIAKSIGKGFQGTMKRWNFKGLRASHGVSVSHRAAGAIGAHQDPGRVWPG 207
>gi|356549722|ref|XP_003543240.1| PREDICTED: 50S ribosomal protein L3-2, chloroplastic-like [Glycine
max]
Length = 300
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 95/183 (51%), Gaps = 14/183 (7%)
Query: 103 IEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPN 162
IEP +P +T +SKRTGLI G LW K G + T++ V DN + + PE
Sbjct: 39 IEP-KPSVMTPNSKRTGLIAVKCGMSALWDKWGARIPITVLWVDDNIVSQVKTPE----- 92
Query: 163 RKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPG 222
K L +G TK G F+ GVP K+KL F +T DA+LP G
Sbjct: 93 --------KEGFCALQIGCGHKKDKHLTKPEVGHFRAQGVPMKRKLKEFPVTEDALLPVG 144
Query: 223 TPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKA 282
T L HF P +++D+ G+T +GFQGVMKR GF G PA+HG + +HR G +
Sbjct: 145 TSLNVRHFVPGQYVDITGITKGKGFQGVMKRHGFSGGPASHGNSLAHRTLGSVGHLTSHG 204
Query: 283 RVY 285
+V+
Sbjct: 205 KVF 207
>gi|409045709|gb|EKM55189.1| hypothetical protein PHACADRAFT_161143 [Phanerochaete carnosa
HHB-10118-sp]
Length = 259
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 87/158 (55%), Gaps = 10/158 (6%)
Query: 130 LWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLY 189
+W NG + T++Q+ + + N K R + + + V A
Sbjct: 4 MWDNNGARLPVTVLQLENCQVTA---------NVKTVRAD-GSEYHAVQVAASDRPEKTT 53
Query: 190 TKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQG 249
TK+ G FK +GVPPK+ + F +TPDA +P GT L+A HF P +F+DV ++ +GFQG
Sbjct: 54 TKQMLGHFKKAGVPPKRTVKEFPVTPDAHVPVGTTLSAIHFVPGQFVDVISNSIGKGFQG 113
Query: 250 VMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
MKRW FKG+ A+HGV+ SHR G I + RV+PG
Sbjct: 114 TMKRWNFKGLRASHGVSVSHRSAGAIGAHQDPGRVWPG 151
>gi|242052463|ref|XP_002455377.1| hypothetical protein SORBIDRAFT_03g009550 [Sorghum bicolor]
gi|241927352|gb|EES00497.1| hypothetical protein SORBIDRAFT_03g009550 [Sorghum bicolor]
Length = 318
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 97/189 (51%), Gaps = 20/189 (10%)
Query: 114 SSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRK 173
+S+RTG+IG G +W K G K T++ V DN + + E K
Sbjct: 68 TSRRTGVIGVKCGMSAMWDKWGAKVPITVLWVDDNVVTQVKTAE-------------KEG 114
Query: 174 LGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPR 233
L +GA TK G F+ GVP K+KL F +T DA+LP GT +T HF P
Sbjct: 115 FFALQLGAGQKKEKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTITVRHFLPG 174
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY-----PG- 287
+F+DV G+T +GF GVMK+ GF G PA+HG + SHR GG RV+ PG
Sbjct: 175 QFVDVTGITKGKGFAGVMKKHGFSGGPASHGASLSHRSGGSTGQRDAPGRVFKNRKMPGR 234
Query: 288 -GVLQRGLK 295
G +QR +K
Sbjct: 235 MGGVQRTVK 243
>gi|384497000|gb|EIE87491.1| hypothetical protein RO3G_12202 [Rhizopus delemar RA 99-880]
Length = 278
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 110/209 (52%), Gaps = 14/209 (6%)
Query: 80 VVHDQCGAPAVKS-GIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKC 138
++++ G A+++ +++T P+E T +S RTG+I K G +W ++G +
Sbjct: 11 LINNSNGLTAIRAISASSFHTTSASFQAAPVEWTPNSVRTGVIAKKKGMTSVWSESGVRM 70
Query: 139 RTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFK 198
T++Q+ +N+I+ + R E K L VG K FK
Sbjct: 71 PVTVLQL-ENNIVTDV------------RTEEKHGYTALQVGCTPKKEKNAPKPLIEHFK 117
Query: 199 NSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKG 258
GV ++KL F +T DA+LP GT LTA+HF +F+DV ++ +GF GVMKRW FKG
Sbjct: 118 KLGVELRQKLFEFRVTKDAVLPIGTELTASHFVEGQFVDVTAPSIGKGFAGVMKRWNFKG 177
Query: 259 MPATHGVTKSHRRGGCIASGAGKARVYPG 287
+PA+HGV+ +HR G ++V+ G
Sbjct: 178 LPASHGVSLTHRSAGSTGQRKWPSKVFKG 206
>gi|393234674|gb|EJD42235.1| mitochondrial 50S ribosomal protein L3 [Auricularia delicata
TFB-10046 SS5]
Length = 335
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 100/189 (52%), Gaps = 16/189 (8%)
Query: 102 KIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI---IKYIPPEE 158
++ PL + RTG+I + G +W ++G + T++Q+ + + +K++
Sbjct: 54 QVLPLNAGRWRPEALRTGVIARKRGMTAMWDEHGTRFPVTVLQLENCQVTGNVKFV---- 109
Query: 159 FKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAM 218
+P+ Y + V A +K+ G F+N+GV PK+ + F ++PDA
Sbjct: 110 -RPDGTEYH--------AVQVAATDKRAKTVSKQMLGHFRNAGVQPKQIVKEFAVSPDAH 160
Query: 219 LPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASG 278
LP GT L A HF P +++DV+ +V +G+ G MKRWGF G+ A+HGV+ SHR G
Sbjct: 161 LPVGTKLNAIHFVPGQYVDVQAKSVGKGWAGAMKRWGFHGLAASHGVSVSHRSAGSTGQH 220
Query: 279 AGKARVYPG 287
RV+PG
Sbjct: 221 QDPGRVWPG 229
>gi|384246652|gb|EIE20141.1| translation protein, partial [Coccomyxa subellipsoidea C-169]
Length = 256
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 103/195 (52%), Gaps = 24/195 (12%)
Query: 116 KRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVD-------NHIIKYIPPEEFKPNRKPYRG 168
+R G++ G W + G + T++ V D N +++ + + P R+ Y
Sbjct: 1 RRCGVLAVKAGMTQEWDQWGARVPLTVLWVDDCQASFAFNALLQVVQIKT--PAREGYL- 57
Query: 169 EPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAA 228
L VG S P + G F+ +GVP K++L F +T DA+LP GT LTAA
Sbjct: 58 -------ALQVGCGSKRPKQVNRGQLGHFEWAGVPIKRRLTEFRVTEDALLPVGTMLTAA 110
Query: 229 HFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG- 287
HF P +++DV+G T+ +GFQGVMKRWGF G PA+HG + +HR G I + +V+PG
Sbjct: 111 HFTPGQYVDVQGTTLGKGFQGVMKRWGFAGQPASHGNSLAHRAAGGIGACQDPGKVWPGK 170
Query: 288 ------GVLQRGLKC 296
G + R L C
Sbjct: 171 KMAGRMGGVTRTLSC 185
>gi|224110272|ref|XP_002315468.1| predicted protein [Populus trichocarpa]
gi|222864508|gb|EEF01639.1| predicted protein [Populus trichocarpa]
Length = 320
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 97/191 (50%), Gaps = 13/191 (6%)
Query: 97 YNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPP 156
Y P +I +P +T +SKRTG+I G LW K G + T++ V DN I+ +
Sbjct: 54 YQQPSRIIEAKPGVMTPNSKRTGVIAVKCGMTALWDKWGARIPITVLWVDDN-IVSQVKT 112
Query: 157 EEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD 216
E K L VG TK G F+ GVP K+KL F +T +
Sbjct: 113 VE------------KEGFFALQVGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPVTEN 160
Query: 217 AMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIA 276
A+LP GT + HF P +F+DV G+T+ +GFQG MKR GFKG PA+HG + SHR G
Sbjct: 161 ALLPVGTCIGVRHFVPGQFVDVAGITMGKGFQGGMKRHGFKGGPASHGASLSHRSIGSTG 220
Query: 277 SGAGKARVYPG 287
+V+ G
Sbjct: 221 QRDAPGKVFKG 231
>gi|242219427|ref|XP_002475493.1| mitochondrial 50S ribosomal protein L3 [Postia placenta Mad-698-R]
gi|220725308|gb|EED79301.1| mitochondrial 50S ribosomal protein L3 [Postia placenta Mad-698-R]
Length = 269
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 10/171 (5%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTGLI + G +W +G + T++Q+ + + I + + + Y
Sbjct: 2 RTGLIARKRGMTVMWDDHGARFPVTVLQLENCQVTANI--KTVRKDLSEYH--------A 51
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ V A TK+ G FK +GV PK+ + F +TPDA +P GT L+A HF P +++
Sbjct: 52 VQVAATDRPAKTATKQMLGHFKKAGVDPKRIVKEFPVTPDAHVPIGTTLSAVHFVPGQYV 111
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV ++ +GFQG MK+W FKG+ A+HGV+ SHR G I + RV+PG
Sbjct: 112 DVIANSLGKGFQGTMKKWNFKGLRASHGVSVSHRSAGAIGAHQDPGRVWPG 162
>gi|147799626|emb|CAN75145.1| hypothetical protein VITISV_033846 [Vitis vinifera]
Length = 243
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 91/177 (51%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
++ +SKRTG I G LW K G + T++ + DN I+ + E
Sbjct: 1 MSPNSKRTGAIAVKCGMSALWDKWGARVPITVLWLDDN-IVSQVKTFE------------ 47
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
K L VG TK G F+ GVP K+KL F +T DA+LP GT + HF
Sbjct: 48 KEGXNALQVGCGQKKAKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALLPVGTTIGVRHF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
P +++DV G+T +GFQG MKRWGFKGMPA+HG + SHR G +V+ G
Sbjct: 108 VPGQYVDVTGITRGKGFQGGMKRWGFKGMPASHGASLSHRSIGSTGQRDAPGKVFKG 164
>gi|390597835|gb|EIN07234.1| mitochondrial 50S ribosomal protein L3 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 328
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 14/227 (6%)
Query: 61 ERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGL 120
ERA I L + F+ V+ + + + I T E P + T S RTGL
Sbjct: 8 ERA--IRRLWTGQRCFV--VLARSLHSTSAANAIPVATTSATAESAAPAKWTPQSLRTGL 63
Query: 121 IGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVG 180
I + +W G + T++Q+ + + I + + + + V
Sbjct: 64 IARKRFMTAMWDDLGARVPVTVLQIENCQVTANIVTKR----------KDDTEYHAVQVA 113
Query: 181 AESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRG 240
A P T + G F+ +GVP K + F +TPDA +P GT L+A HF P +++DV
Sbjct: 114 ASDKSPKNTTHQMRGHFRKAGVPNKAIVREFPVTPDAHVPVGTTLSAIHFVPGQYVDVVA 173
Query: 241 LTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
++ +GF G MKRW FKG+ A+HGV+ SHR G + RV+PG
Sbjct: 174 KSIGKGFAGTMKRWNFKGLRASHGVSVSHRSAGSTGAHQDPGRVWPG 220
>gi|393216910|gb|EJD02400.1| mitochondrial 50S ribosomal protein L3 [Fomitiporia mediterranea
MF3/22]
Length = 320
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 94/176 (53%), Gaps = 10/176 (5%)
Query: 112 TTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPK 171
T S RTGLI + G LW ++G +C T++Q+ + + I K R + K
Sbjct: 47 TPHSVRTGLIARKRGMTALWDQHGARCPVTVLQLENCQVTANI---------KTVRND-K 96
Query: 172 RKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFR 231
+ + VGA G F+ + VP K + F +TPDA +P GT L+A HF
Sbjct: 97 SEYHAVQVGASDRPERTTDNAMRGHFRKANVPMKYIVKEFPVTPDAHVPVGTALSAFHFV 156
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
P +++DV ++ +GFQG MKRWGF+G+ A+HGV+ SHR+ G RV+PG
Sbjct: 157 PGQYVDVIANSIGKGFQGGMKRWGFRGLRASHGVSVSHRKIGATGGHQDPGRVWPG 212
>gi|449459792|ref|XP_004147630.1| PREDICTED: 50S ribosomal protein L3-2, chloroplastic-like [Cucumis
sativus]
gi|449498766|ref|XP_004160627.1| PREDICTED: 50S ribosomal protein L3-2, chloroplastic-like [Cucumis
sativus]
Length = 328
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Query: 107 QPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPY 166
+P + ++S RTG+I G LW K G + T++ V DN I+ + E
Sbjct: 69 KPGTMGSNSTRTGVIAVKCGMSALWDKWGARIPITVLWVDDN-IVSQVKTIE-------- 119
Query: 167 RGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLT 226
K + L +G +K G F+ GVP K+KL F ++ DA+LP GT +
Sbjct: 120 ----KEGITALQIGCGQKKEKHLSKPELGHFRAQGVPLKRKLREFPVSQDALLPVGTEIG 175
Query: 227 AAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYP 286
HF P +++DV G++ +GFQGVMKR GFKGMPA+HG + SHR GG +V+
Sbjct: 176 VRHFVPGQYVDVTGISRGKGFQGVMKRHGFKGMPASHGASLSHRSGGSTGQRDAPGKVFK 235
Query: 287 G 287
G
Sbjct: 236 G 236
>gi|340508401|gb|EGR34111.1| hypothetical protein IMG5_023250 [Ichthyophthirius multifiliis]
Length = 437
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 91/180 (50%), Gaps = 13/180 (7%)
Query: 106 LQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKP 165
L+P+ T +SKRTG++G +G +W K G T++Q+ +++
Sbjct: 172 LKPISPTKTSKRTGVLGYKLGMTSIWDKWGTLVPLTVIQLDRCQVVQV------------ 219
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+ E K L +G +P K G F S +P KK L F ++ D +LPPG L
Sbjct: 220 -KTEEKEGYNALQLGIGELNPKRIKKPQIGHFMKSNIPSKKDLTEFKVSKDCLLPPGFML 278
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
+A HF P + +DV G++V +GFQG +KRW FK ATHG + SHR G RV+
Sbjct: 279 SARHFTPGQLVDVSGISVGKGFQGCVKRWNFKMQDATHGNSLSHRVPGSTGQRQDPGRVF 338
>gi|118486756|gb|ABK95213.1| unknown [Populus trichocarpa]
Length = 315
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 97/191 (50%), Gaps = 13/191 (6%)
Query: 97 YNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPP 156
Y+ +I +P +T +SKRTG++ G LW K G + T++ V DN I+ +
Sbjct: 49 YHQQSRIIEAKPGVMTPNSKRTGVVAVKCGMTALWDKWGARIPITVLWVDDN-IVSQVKT 107
Query: 157 EEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD 216
E K L VG TK G F+ GVP K+KL F +T D
Sbjct: 108 VE------------KEGFFALQVGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPVTED 155
Query: 217 AMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIA 276
A+LP GT + HF P +F+DV G+T+ +GFQG MKR GFKG PA+HG + SHR G
Sbjct: 156 ALLPVGTYVGVRHFVPGQFVDVAGITMGKGFQGGMKRHGFKGGPASHGASLSHRSIGSTG 215
Query: 277 SGAGKARVYPG 287
+V+ G
Sbjct: 216 QRDAPGKVFKG 226
>gi|357129437|ref|XP_003566368.1| PREDICTED: LOW QUALITY PROTEIN: 50S ribosomal protein L3-2,
chloroplastic-like [Brachypodium distachyon]
Length = 310
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 88/170 (51%), Gaps = 13/170 (7%)
Query: 116 KRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLG 175
+RTG+IG G +W K G K T++ V DN + + E K
Sbjct: 62 RRTGVIGVKCGMSAMWDKWGAKVPITVLWVDDNVVCQVKTAE-------------KEGFF 108
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREF 235
L +GA TK G F++ GVP K+KL F +T DA+LP GT +TA HF P +F
Sbjct: 109 ALQLGAGQKKEKHLTKPEVGHFRSQGVPLKRKLKEFPVTEDALLPVGTTITARHFVPGQF 168
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
+DV G+T +GF G MKR GF GMPA+HG + SHR G RV+
Sbjct: 169 VDVIGITKGKGFAGGMKRHGFSGMPASHGASLSHRSIGSTGQRDAPGRVF 218
>gi|302692256|ref|XP_003035807.1| mitochondrial 54S ribosomal protein YmL9 [Schizophyllum commune
H4-8]
gi|300109503|gb|EFJ00905.1| hypothetical protein SCHCODRAFT_74210 [Schizophyllum commune H4-8]
Length = 323
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 10/184 (5%)
Query: 104 EPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNR 163
E +P + T S RTG+I + G ++ ++G C T++Q+ + + I + +
Sbjct: 44 ESREPPKWTPLSVRTGVIARKKGMTTIFNEHGVACPVTVLQLENCQVTANI--RTVRRDH 101
Query: 164 KPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGT 223
Y + V A + + G F +GVPPK+ + F +TPDA++P GT
Sbjct: 102 TVYH--------AVQVAASDKAAKNTSIQMLGHFNKAGVPPKQVVKEFPVTPDAVVPVGT 153
Query: 224 PLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKAR 283
L+A HF P +++DV ++ +GFQG MKRWGF G+ A+HG + SHR G AR
Sbjct: 154 TLSACHFVPGQYVDVVANSIGKGFQGGMKRWGFGGLAASHGASISHRSLGSTGQNTDPAR 213
Query: 284 VYPG 287
V+PG
Sbjct: 214 VWPG 217
>gi|326437537|gb|EGD83107.1| hypothetical protein PTSG_03748 [Salpingoeca sp. ATCC 50818]
Length = 307
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 111/216 (51%), Gaps = 27/216 (12%)
Query: 72 NNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLW 131
++ A E HD+ A A+ + +YN +KRTG++ + +G +
Sbjct: 32 DSSADAAEGEHDERTA-AIAKYLRSYNA-------------AETKRTGILARKLGMTQTF 77
Query: 132 MKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTK 191
GE+ T Q+ D ++ E +R Y + +GA + +P K
Sbjct: 78 TLWGERVPLTAFQIEDLQVV-----EHKTVDRDGY--------SAMRLGAVNLEPRKVKK 124
Query: 192 EYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVM 251
G F+ +PPK+ + F +T D +LP GT ++ +HF P +++DV+G+T+ +GFQGVM
Sbjct: 125 PVLGQFRKHKLPPKQHVAEFRVTEDCILPIGTHISCSHFIPGQYVDVQGVTIGKGFQGVM 184
Query: 252 KRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
KR FKGMPA+HGVT +HR+ G + G RV+ G
Sbjct: 185 KRHNFKGMPASHGVTLTHRKAGGLGGGQDPGRVWKG 220
>gi|319411891|emb|CBQ73934.1| related to MRPL9-mitochondrial ribosomal protein, large subunit
[Sporisorium reilianum SRZ2]
Length = 378
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 97/176 (55%), Gaps = 11/176 (6%)
Query: 114 SSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRK 173
+S+R GLI G ++ NGE+ T++QV N + +I F P+ +
Sbjct: 94 TSQRVGLIAVKRGMTSFFLPNGERIPATVLQVHTNQVSAHI---GFGPD------ATEST 144
Query: 174 LGCLLVGA-ESGDPSLYTKEYCGLFKNSGVPPKKKLCR-FIITPDAMLPPGTPLTAAHFR 231
L V A ++ +L TK+ G K +G+ KK+ R F ++ DA++P GT L+A HF
Sbjct: 145 YTALQVAAVDTKSINLVTKQIRGHLKTAGISRGKKIIREFRVSSDALVPLGTQLSAVHFV 204
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
P + +DVR +T GFQGVMKR GF G+ A+HGV+ SHR G + RV+PG
Sbjct: 205 PGQSIDVRAITRGHGFQGVMKRHGFHGLRASHGVSISHRSHGSTGANQDPGRVWPG 260
>gi|300120599|emb|CBK20153.2| unnamed protein product [Blastocystis hominis]
gi|300176505|emb|CBK24170.2| unnamed protein product [Blastocystis hominis]
Length = 250
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 94/177 (53%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
++ +SKRTG++ IG PLW K + T++Q+ + +++ + +
Sbjct: 1 MSPTSKRTGVVALKIGMMPLWDKWCTRIPCTVLQIENCQVVQV-------------KTKE 47
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
K L VGA K G +K+ GV PK+ L F +T DA LP GT LT HF
Sbjct: 48 KENTNSLQVGAGPVKVKNVNKPLFGHYKSVGVEPKRYLTEFKVTEDAFLPVGTELTCKHF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
P + ++++G+T +GFQGVM+RWGFKG+ A+HGV+ SHR G + + G
Sbjct: 108 VPGQRVNIQGITQGKGFQGVMRRWGFKGLGASHGVSVSHRSLGSTGQREDPGKTFKG 164
>gi|218187896|gb|EEC70323.1| hypothetical protein OsI_01192 [Oryza sativa Indica Group]
Length = 319
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 87/172 (50%), Gaps = 13/172 (7%)
Query: 114 SSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRK 173
S+RTG+IG G +W K G K T++ V DN + + E K
Sbjct: 71 DSRRTGVIGVKCGMSAMWDKWGAKVPITVLWVDDNVVCQVKTAE-------------KEG 117
Query: 174 LGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPR 233
L +GA TK G F+ GVP K+KL F +T DA++P GT +T HF P
Sbjct: 118 FFALQLGAGQKKEKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALIPLGTTITVRHFVPG 177
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
+F+DV G+T +GF G MKR GF GMPA+HG + SHR G RV+
Sbjct: 178 QFVDVTGITKGKGFAGGMKRHGFSGMPASHGASLSHRSIGSTGQRDAPGRVF 229
>gi|115435682|ref|NP_001042599.1| Os01g0251100 [Oryza sativa Japonica Group]
gi|7106521|dbj|BAA92206.1| putative ribosomal protein L3 [Oryza sativa Japonica Group]
gi|113532130|dbj|BAF04513.1| Os01g0251100 [Oryza sativa Japonica Group]
gi|215678787|dbj|BAG95224.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215707174|dbj|BAG93634.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222618109|gb|EEE54241.1| hypothetical protein OsJ_01115 [Oryza sativa Japonica Group]
Length = 319
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 87/172 (50%), Gaps = 13/172 (7%)
Query: 114 SSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRK 173
S+RTG+IG G +W K G K T++ V DN + + E K
Sbjct: 71 DSRRTGVIGVKCGMSAMWDKWGAKVPITVLWVDDNVVCQVKTAE-------------KEG 117
Query: 174 LGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPR 233
L +GA TK G F+ GVP K+KL F +T DA++P GT +T HF P
Sbjct: 118 FFALQLGAGQKKEKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALIPLGTTITVRHFVPG 177
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
+F+DV G+T +GF G MKR GF GMPA+HG + SHR G RV+
Sbjct: 178 QFVDVTGITKGKGFAGGMKRHGFSGMPASHGASLSHRSIGSTGQRDAPGRVF 229
>gi|326490890|dbj|BAJ90112.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 313
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 93/184 (50%), Gaps = 13/184 (7%)
Query: 102 KIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKP 161
+I +P + S+RTG+IG G +W K G K T++ V DN + + E
Sbjct: 51 RIIETRPGVMGPESRRTGVIGVKCGMSAMWDKWGAKVPITVLWVDDNVVCQVKTAE---- 106
Query: 162 NRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPP 221
K L +GA TK G F++ GVP K+KL F +T DA+LP
Sbjct: 107 ---------KEGFYALQLGAGQKKEKHLTKPEVGHFRSQGVPLKRKLKEFPVTEDALLPV 157
Query: 222 GTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK 281
GT ++ HF P +F+DV G+T +GF G MKR GF GMPA+HG + SHR G
Sbjct: 158 GTTISVRHFVPGQFVDVIGITKGKGFAGGMKRHGFSGMPASHGASLSHRSIGSTGQRDSP 217
Query: 282 ARVY 285
RV+
Sbjct: 218 GRVF 221
>gi|303287272|ref|XP_003062925.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455561|gb|EEH52864.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 221
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 13/172 (7%)
Query: 116 KRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLG 175
+R G + +G W ++G + T++ + + +++ PE K
Sbjct: 4 QRVGALAVKVGMTQEWNEHGARVPLTVLWIDECEVVQAKTPE-------------KEGYA 50
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREF 235
L +GA S T G F GV K++L F +TPDA+LP GT + A+HF ++
Sbjct: 51 ALQMGAGSKKRKQITGAEYGHFAARGVQIKRELSEFRVTPDAILPVGTVVDASHFLAGQY 110
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+D++G T+ +GFQG MKRWGF G+PA+HG TK HR G I + RV+ G
Sbjct: 111 VDIQGKTIGKGFQGPMKRWGFAGLPASHGTTKKHRAHGSIGNSQDPGRVWKG 162
>gi|299753327|ref|XP_001833202.2| mitochondrial 54S ribosomal protein YmL9 [Coprinopsis cinerea
okayama7#130]
gi|298410250|gb|EAU88475.2| ribosomal protein L3 [Coprinopsis cinerea okayama7#130]
Length = 257
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
Query: 130 LWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLY 189
LW G K T++Q+ + + I + +P+ Y + V + P
Sbjct: 4 LWNDQGVKFPVTVLQLDNCQVTANI--KTPRPDHTVYH--------AVQVASTDRPPKTT 53
Query: 190 TKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQG 249
T++ G F + VPPK+ + F +T DA +P GT L AAHF P +++DV ++ +GFQG
Sbjct: 54 TRQMLGHFAKANVPPKRYVKEFPVTADAHVPVGTTLNAAHFVPGQYVDVVAKSIGKGFQG 113
Query: 250 VMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
MKRWGF G+ A+HGV+ SHR G + R+YPG
Sbjct: 114 GMKRWGFHGLAASHGVSVSHRSSGSAGNSQDPGRIYPG 151
>gi|164663113|ref|XP_001732678.1| hypothetical protein MGL_0453 [Malassezia globosa CBS 7966]
gi|159106581|gb|EDP45464.1| hypothetical protein MGL_0453 [Malassezia globosa CBS 7966]
Length = 336
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 8/176 (4%)
Query: 112 TTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPK 171
T S R GLI + G ++M +G + T++ V N + ++ + + PY
Sbjct: 60 TPMSLRVGLITRKKGMTTMFMPDGTRVPATVLYVDSNQVSMHVQRDAPSQDEAPYM---- 115
Query: 172 RKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFR 231
L V A S + G +G+ PK+ + F +TPDAMLP GT L+AAHF
Sbjct: 116 ----ALQVAASDARESAVSAPVRGHLSRAGLGPKRVIKEFRVTPDAMLPIGTQLSAAHFV 171
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
P + +DVR +T +GF GVMKR F G A+HG + +HR G + + RV+PG
Sbjct: 172 PGQDVDVRAITRGKGFAGVMKRHNFAGGNASHGASLAHRTPGSVGNNQDPGRVWPG 227
>gi|443924918|gb|ELU43864.1| 50S ribosomal protein L3 [Rhizoctonia solani AG-1 IA]
Length = 791
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 99/207 (47%), Gaps = 34/207 (16%)
Query: 104 EPLQPLEITTS------SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIP-P 156
E LQ + T++ S+RTGLI + G +W +NG + T++Q+ + + + P
Sbjct: 31 EKLQEVVATSTKQWTPLSQRTGLIARKRGMTAVWDQNGARVPITVLQIENCQVTGNVSTP 90
Query: 157 EEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD 216
+FKP + + A T+ G F +GV PK+ + F +T D
Sbjct: 91 RKFKPTYH-----------AVQIAASDRSEKSTTRAMLGHFSKAGVSPKRIVKEFEVTED 139
Query: 217 AMLPPGTPLTAAHFRPREFLDVRG----------------LTVDRGFQGVMKRWGFKGMP 260
A+LP GT L+A HF P + +DV G ++ +G+ G MKRW F+G+
Sbjct: 140 ALLPVGTTLSACHFVPGQSVDVIGTSYVNLSFNKPKSNGYFSMGKGYAGTMKRWNFRGLA 199
Query: 261 ATHGVTKSHRRGGCIASGAGKARVYPG 287
A+HGV+ SHR G RV+PG
Sbjct: 200 ASHGVSISHRAAGSTGQHQDPGRVFPG 226
>gi|390370115|ref|XP_001200456.2| PREDICTED: 39S ribosomal protein L3, mitochondrial-like, partial
[Strongylocentrotus purpuratus]
Length = 190
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 67/97 (69%)
Query: 191 KEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGV 250
+EY LFK+ +P K+ + F +T +A L PGTPL AAHFRP ++D+ T+D+GFQGV
Sbjct: 3 EEYADLFKSVCLPVKEHITSFNVTDNAALQPGTPLYAAHFRPGMYVDIAAKTIDKGFQGV 62
Query: 251 MKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
MKRWG KG PA+HG TK+HR+ G G R++PG
Sbjct: 63 MKRWGMKGQPASHGATKTHRKMGGSGGGGDPGRIWPG 99
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 48/66 (72%)
Query: 222 GTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK 281
GTPL AAHFRP ++D+ T+D+GFQGVMKRWG KG PA+HG TK+HR+ G G
Sbjct: 107 GTPLYAAHFRPGMYVDIAAKTIDKGFQGVMKRWGMKGQPASHGATKTHRKMGGSGGGGDP 166
Query: 282 ARVYPG 287
R++PG
Sbjct: 167 GRIWPG 172
>gi|443895727|dbj|GAC73072.1| mitochondrial/chloroplast ribosomal protein L3 [Pseudozyma
antarctica T-34]
Length = 372
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 94/176 (53%), Gaps = 11/176 (6%)
Query: 114 SSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRK 173
+SKR GLI G ++ NGE+ T++QV N I ++ E N Y
Sbjct: 88 TSKRVGLIAVKRGMTSFFLPNGERIPATVLQVHSNQISAHVGFGE-NANESNYT------ 140
Query: 174 LGCLLVGA-ESGDPSLYTKEYCGLFKNSGVPPKKKLCR-FIITPDAMLPPGTPLTAAHFR 231
L V A ++ P T++ G K +GV K++ F ++ DA++P GT L+A HF
Sbjct: 141 --ALQVAAIDTPTPWHVTRQVRGHLKKAGVNTGKRVIHEFPVSADALVPLGTRLSAVHFV 198
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
P + +DVRG+T GFQGVMKR GF G+ A+HGV+ SHR G RV+PG
Sbjct: 199 PGQSVDVRGITRGHGFQGVMKRHGFHGLRASHGVSISHRSHGSTGQHQDPGRVWPG 254
>gi|167518906|ref|XP_001743793.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777755|gb|EDQ91371.1| predicted protein [Monosiga brevicollis MX1]
Length = 309
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 89/172 (51%), Gaps = 13/172 (7%)
Query: 116 KRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLG 175
+R LI K +G W + G T++QV D ++ + E R Y
Sbjct: 65 RRAPLIAKKLGMTQTWDRWGTLIPMTVLQVEDCQVVGHRTIE-----RDGYE-------- 111
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREF 235
L++GAE+ S G F G+P K+ + I+ +AMLP G L+ HF P +
Sbjct: 112 ALILGAETIKDSKLDGRIRGQFAKHGLPSKRHMEEARISAEAMLPIGYELSCEHFEPGQL 171
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DVRG T+ +GF GVMKR FKGMPATHGVTK+HRR G G RV+ G
Sbjct: 172 VDVRGTTIGKGFAGVMKRHNFKGMPATHGVTKTHRRMGGFGGGQDPGRVWKG 223
>gi|146332291|gb|ABQ22651.1| mitochondrial 39S ribosomal protein L3-like protein [Callithrix
jacchus]
Length = 173
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/80 (63%), Positives = 61/80 (76%), Gaps = 1/80 (1%)
Query: 211 FIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
F IT +A L PGTPL AAHFRP +++DV T+ +GFQGVMKRWGFKG PATHG TK+HR
Sbjct: 4 FRITDNAALKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHR 63
Query: 271 RGGCIASGAGKARVYPGGVL 290
R G I++G ARV+PG L
Sbjct: 64 RPGAISTG-DVARVWPGTKL 82
>gi|449685932|ref|XP_002162736.2| PREDICTED: 39S ribosomal protein L3, mitochondrial-like [Hydra
magnipapillata]
Length = 360
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 101/190 (53%), Gaps = 6/190 (3%)
Query: 98 NTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPE 157
N I+PL + T S R G +G +G LW KNG TLVQ+ D +I
Sbjct: 85 NLSSHIDPLNA-KWTPESIRVGALGIKLGVSVLWTKNGFCHMVTLVQIKDCQVIDTQISC 143
Query: 158 EFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA 217
E N G + LGC + ++ L +++ + + PK+ F +T +A
Sbjct: 144 EDGGND----GITQMLLGCCDITDDNVLAKL-PRDHVLWYDQRNLFPKQYWTGFPVTKNA 198
Query: 218 MLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
+L PGT +T+ HF+P + + V+G+++D+GFQGVM+RWG KG P +HG T +HR+ G
Sbjct: 199 LLFPGTKITSLHFQPGQHVVVQGISIDKGFQGVMRRWGMKGQPQSHGQTLTHRKMGGTGG 258
Query: 278 GAGKARVYPG 287
G R++PG
Sbjct: 259 GQDPGRIFPG 268
>gi|358059995|dbj|GAA94269.1| hypothetical protein E5Q_00918 [Mixia osmundae IAM 14324]
Length = 335
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 94/182 (51%), Gaps = 17/182 (9%)
Query: 107 QPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPY 166
Q L S RTG++ + G LW G++ T++ + D ++ +PY
Sbjct: 63 QELAWDASLDRTGVLARKTGMTALWDDKGQRIPITVLALDDVQVVST--------QSEPY 114
Query: 167 RGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIIT-PDAMLPPGTPL 225
P ++ C +E P + G+F+ +G+ K ++ F + A L PGT L
Sbjct: 115 ---PAVQVACT-PRSEKTTP----RAIRGIFRKAGIDNKMRITEFKTSLTGAQLSPGTTL 166
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
+AAHF P ++LDV+ TV +GFQG MKRWGF+G+ A+HGV+ SHR G RV+
Sbjct: 167 SAAHFVPGQYLDVQAKTVGKGFQGGMKRWGFRGLRASHGVSVSHRSHGSTGQHQDPGRVF 226
Query: 286 PG 287
PG
Sbjct: 227 PG 228
>gi|426200076|gb|EKV50000.1| hypothetical protein AGABI2DRAFT_190423 [Agaricus bisporus var.
bisporus H97]
Length = 297
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 10/173 (5%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
S RTGLI + G LW G K T++QV + + + + + Y
Sbjct: 29 SIRTGLIARKRGMTSLWNDQGVKIPVTVLQVENCQVTANV--RTVRRDHTVYH------- 79
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
+ V A T++ G F+ +GV PK+ + F +T DA++P GT L+A HF P +
Sbjct: 80 -AVQVAASDKPARSTTQQMQGHFRKAGVAPKRVVKEFPVTSDAVVPVGTTLSAIHFVPGQ 138
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
++DV ++ +GFQGVMKR+ F G A+HG + SHR G R++PG
Sbjct: 139 YVDVVANSIGKGFQGVMKRFNFGGQSASHGTSVSHRSAGSTGQHQDPGRIWPG 191
>gi|409082245|gb|EKM82603.1| hypothetical protein AGABI1DRAFT_111203 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 297
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 10/173 (5%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
S RTGLI + G LW G K T++QV + + + + + Y
Sbjct: 29 SIRTGLIARKRGMTSLWNDQGVKIPVTVLQVENCQVTANV--RTVRRDHTVYH------- 79
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
+ V A T++ G F+ +GV PK+ + F +T DA++P GT L+A HF P +
Sbjct: 80 -AVQVAASDKPARSTTQQMQGHFRKAGVAPKRIVKEFPVTSDAVVPVGTTLSAIHFVPGQ 138
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
++DV ++ +GFQGVMKR+ F G A+HG + SHR G R++PG
Sbjct: 139 YVDVVANSIGKGFQGVMKRFNFGGQSASHGTSVSHRSAGSTGQHQDPGRIWPG 191
>gi|338739398|ref|YP_004676360.1| 50S ribosomal protein L3 [Hyphomicrobium sp. MC1]
gi|337759961|emb|CCB65792.1| 50S ribosomal protein L3 [Hyphomicrobium sp. MC1]
Length = 233
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + IG ++ GE T++++ + ++ +R E K
Sbjct: 2 RSGVIAQKIGMTRIFTDAGEHIPVTVLRLENLQVL-------------SHRTEEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ VG + PS TK G F + V PK+K+ F ++P+ ++ G +TA HF P +F+
Sbjct: 49 IQVGGGTRKPSRLTKSERGTFAKAEVEPKRKIAEFRVSPENLIDVGAEITADHFVPGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T +GFQG MKRW F G+ ATHGV+ +HR G +V+ G
Sbjct: 109 DVTGTTQGKGFQGAMKRWNFGGLRATHGVSVTHRAHGSTGQRQDPGKVFKG 159
>gi|229594830|ref|XP_001032401.3| ribosomal protein L3 containing protein [Tetrahymena thermophila]
gi|225566556|gb|EAR84738.3| ribosomal protein L3 containing protein [Tetrahymena thermophila
SB210]
Length = 439
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 13/191 (6%)
Query: 106 LQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKP 165
++ E T +SKRTG++G +G +W K G+ T++Q+ +++
Sbjct: 174 IKQFEPTKTSKRTGILGYKLGMTSIWDKWGKLHALTVIQIDRCQVVQV------------ 221
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+ E K + L +G K G + +PPK+ L F ++PD LP G L
Sbjct: 222 -KTEEKDGVNALQLGVGEKSLKRINKPTIGHLMKNDIPPKRHLKEFKVSPDCFLPAGYML 280
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
+A HF P +++D++G++V +GF G +KRW FK ATHG + SHR G RV+
Sbjct: 281 SARHFVPGQYVDIQGISVGKGFAGTVKRWNFKMQDATHGNSLSHRAPGSTGQRQDPGRVF 340
Query: 286 PGGVLQRGLKC 296
+ + C
Sbjct: 341 KNKKMAGHMGC 351
>gi|388854951|emb|CCF51454.1| related to MRPL9-mitochondrial ribosomal protein, large subunit
[Ustilago hordei]
Length = 371
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 114 SSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRK 173
+S+R GLI G ++ NGE+ T++QV N + +I + N Y
Sbjct: 87 TSQRVGLIAVKRGMTSFFLPNGERIPATILQVHSNQVSAHIGFGA-EVNDSTYT------ 139
Query: 174 LGCLLVGAESGDPSLY-TKEYCGLFKNSGVPPKKKLCR-FIITPDAMLPPGTPLTAAHFR 231
L V A L+ TK+ G + +G+ KK+ R F ++ DA++P GT L+A HF
Sbjct: 140 --ALQVAAVDTKTRLHVTKQIRGHLRKAGIKSGKKIIREFPVSSDAIVPLGTKLSAVHFV 197
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
P + +DVR +T GFQG MKR GF G+ A+HGV+ SHR G + RV+PG
Sbjct: 198 PGQSVDVRAITRGHGFQGAMKRHGFHGLRASHGVSISHRSHGSTGANQDPGRVWPG 253
>gi|357443029|ref|XP_003591792.1| 50S ribosomal protein L3-2 [Medicago truncatula]
gi|355480840|gb|AES62043.1| 50S ribosomal protein L3-2 [Medicago truncatula]
Length = 347
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 100/196 (51%), Gaps = 18/196 (9%)
Query: 92 SGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHII 151
S +ET T IE +P +T +S+RTG+I G W K G + +++ V DN +
Sbjct: 79 SDVETIRT---IE-AKPSVMTPNSQRTGVIAVKCGMTAHWDKWGARIPISILWVDDNIVS 134
Query: 152 KYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRF 211
+ PE K L +G TK G F+ GVP K+KL F
Sbjct: 135 QVKTPE-------------KEGYCSLQIGCGQKKEKHLTKPEVGHFRAQGVPMKRKLQEF 181
Query: 212 IITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRR 271
+T DA+LP GT L HF P +++D+ G+T +GFQGVMK++GF G A+HG +K+HR
Sbjct: 182 RVTEDALLPVGTSLNVRHFVPGQYVDITGITKGKGFQGVMKKYGFHGGSASHGNSKAHRI 241
Query: 272 GGCIASGAGKARVYPG 287
G G +V+ G
Sbjct: 242 MGSTGI-LGPCKVFKG 256
>gi|357495979|ref|XP_003618278.1| 50S ribosomal protein L3-2 [Medicago truncatula]
gi|355493293|gb|AES74496.1| 50S ribosomal protein L3-2 [Medicago truncatula]
Length = 294
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 98/196 (50%), Gaps = 18/196 (9%)
Query: 92 SGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHII 151
S +ET T IE +P +T +S+RTGL+ G W K G + +++ V DN +
Sbjct: 26 SDVETIRT---IE-AKPSVMTPNSRRTGLVAVKCGMTAHWDKWGARIPISILWVDDNIVS 81
Query: 152 KYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRF 211
+ PE K L +G TK G F+ GVP K+KL F
Sbjct: 82 QVKTPE-------------KEGYCSLQIGCGQKKEKHLTKPEVGHFRAQGVPMKRKLQEF 128
Query: 212 IITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRR 271
+T DA+LP GT L HF P +++D+ G+T +GFQGV+ R FKG PA+HG +K+ R
Sbjct: 129 RVTEDALLPVGTSLNVRHFVPGQYVDITGITKGKGFQGVIDRHNFKGGPASHGNSKTERT 188
Query: 272 GGCIASGAGKARVYPG 287
G G RV+ G
Sbjct: 189 MGSTGM-LGPCRVFKG 203
>gi|255083651|ref|XP_002508400.1| predicted protein [Micromonas sp. RCC299]
gi|226523677|gb|ACO69658.1| predicted protein [Micromonas sp. RCC299]
Length = 259
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 13/172 (7%)
Query: 116 KRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLG 175
+R+G I G W ++G + T++ + D + + E K
Sbjct: 13 RRSGAIAVKCGMTAEWNEHGVRVPLTVLWIDDCRVTQVKTQE-------------KEGYT 59
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREF 235
L +GA S + G F VP +L F ++PDA+LP GT + A+HF ++
Sbjct: 60 ALQLGAGSKKAKRLNRSERGHFIAGDVPFSAELTEFRVSPDAILPVGTAIGASHFSAGQY 119
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+D++G T+ +GFQG MKRWGF G+PA+HG TK HR G I + RV+ G
Sbjct: 120 VDIQGRTIGKGFQGPMKRWGFSGLPASHGTTKKHRAHGSIGNSQDPGRVWKG 171
>gi|430811607|emb|CCJ30918.1| unnamed protein product [Pneumocystis jirovecii]
Length = 286
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 86/173 (49%), Gaps = 14/173 (8%)
Query: 116 KRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLG 175
+R GL+ G +W ++G++ T++QV +I R + K
Sbjct: 69 ERPGLLACKKGMTSVWTEDGKRIPVTVLQVDRLQVIDI-------------RTKKKNGYD 115
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRF-IITPDAMLPPGTPLTAAHFRPRE 234
+ VG S +P ++ G F + VPPK K+ F I P L GT L HF+
Sbjct: 116 AIQVGVGSRNPRNISRAMLGHFARAKVPPKSKVVEFRIKEPLKSLELGTQLFVNHFQEGA 175
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F+D+RG ++ +GF GVMKRW F G+PA+HGV+ SHR G RV+PG
Sbjct: 176 FVDIRGKSIGKGFSGVMKRWNFHGLPASHGVSISHRSPGSTGQSQDPGRVFPG 228
>gi|320166925|gb|EFW43824.1| mitochondrial ribosomal protein L3 [Capsaspora owczarzaki ATCC
30864]
Length = 566
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 88/175 (50%), Gaps = 15/175 (8%)
Query: 113 TSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKR 172
T S+RTG+I +G W G++ T++Q+ D ++ + PE
Sbjct: 320 TFSQRTGVIATKVGMMHTWNHWGQRLPLTVLQISDAAVLDFRVPESH------------- 366
Query: 173 KLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRP 232
G + +G+ K G F+ G+ +K + F +T +A++PPGT L AAHF P
Sbjct: 367 --GYTALQIAAGEIKQPAKHVEGTFRRVGLTARKHIHEFRVTANALIPPGTRLYAAHFIP 424
Query: 233 REFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +DV T RGF GVMKR G KG PA+HG + HR G G G RVYPG
Sbjct: 425 GQHVDVLANTKGRGFAGVMKRHGMKGSPASHGHSLVHRAMGSFGGGGGMGRVYPG 479
>gi|449016044|dbj|BAM79446.1| mitochondrial ribosomal protein L3 precursor [Cyanidioschyzon
merolae strain 10D]
Length = 328
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 92/174 (52%), Gaps = 8/174 (4%)
Query: 116 KRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLG 175
+R G++ + IG P W NG T++ + +NH+I+ ++ N +G + +
Sbjct: 58 RRIGVVARKIGMLPHWDANGVYRCVTVLHIDNNHVIQV---KQLPSNASNLKGLSEWSV- 113
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAM--LPPGTPLTAAHFRPR 233
+GA S P K + +G K+KL F + P A + PGTP+TA HF P
Sbjct: 114 --QIGAGSMRPYQAKKPHRYHCAYAGTDVKEKLVEFRVAPAAAACIEPGTPITARHFIPG 171
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
++LDV G ++ +GFQG MKR GF G+PA+HGV+ +HR G RV+ G
Sbjct: 172 QYLDVIGTSIGKGFQGAMKRHGFGGLPASHGVSLTHRSLGATGQRQDPGRVFKG 225
>gi|440797729|gb|ELR18806.1| ribosomal protein L3, putative [Acanthamoeba castellanii str. Neff]
Length = 455
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 67/111 (60%)
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L VGA G K G F ++GV PKK L F I+PDA++P GT L A HF P + L
Sbjct: 166 LQVGAVDGKWRRLAKAQRGHFFHAGVNPKKVLMEFKISPDAVVPVGTELRAEHFVPGQLL 225
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D+ G T +GFQGVMKRWGF G PA+HG + SHR G + ++V+ G
Sbjct: 226 DLTGKTKGKGFQGVMKRWGFSGGPASHGNSASHREPGSTGQHSIPSKVWKG 276
>gi|313233372|emb|CBY24487.1| unnamed protein product [Oikopleura dioica]
Length = 303
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 102/196 (52%), Gaps = 15/196 (7%)
Query: 54 PLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEI-- 111
P+ L K +++ +L+ N+ F+ ++ D+ A + +T L E I
Sbjct: 100 PMSRLPKSASKWDASLSYENRYFLNQIF-DEKKNYAAEERQKTIQENLVGEEKSRWPIYK 158
Query: 112 -TTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
T S+RTG++ K IG P+W+++G + +T++QV + H+IKY P EF
Sbjct: 159 YKTGSRRTGMVMKKIGVEPMWLRDGTRVVSTILQVQNCHVIKYFPKHEFNG--------- 209
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
+ G ++VGA +G P L + Y ++G+ PK L RF IT +A L PGTPL HF
Sbjct: 210 --RTGAVIVGAGTGKPFLKNENYTQYCLDAGLTPKAHLARFPITENARLQPGTPLHVQHF 267
Query: 231 RPREFLDVRGLTVDRG 246
+++DV +VD G
Sbjct: 268 HVGQYVDVVLKSVDFG 283
>gi|50309329|ref|XP_454671.1| mitochondrial 54S ribosomal protein YmL9 [Kluyveromyces lactis NRRL
Y-1140]
gi|49643806|emb|CAG99758.1| KLLA0E16039p [Kluyveromyces lactis]
Length = 273
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 15/203 (7%)
Query: 87 APAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMK-NGEKCRTTLVQV 145
AP+V S I +K P L+ R G + K +G P + K G++ T++Q+
Sbjct: 29 APSVASSIHLDPVDIKHSPENALKRRRLPLRCGALSKKVGMMPYFEKETGKRIAATVLQL 88
Query: 146 VDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPK 205
+N +I + P E +G + P T++ G F V PK
Sbjct: 89 DNNEVILHRTPAE-------------NNYWACQIGYGNKSPENVTRQMLGHFAAHVVNPK 135
Query: 206 KKLCRFIITPDA-MLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHG 264
+K+ F + ++ +LP G+ + + F+P +++D+R ++ +GFQGVMKR+GFKG+ A+HG
Sbjct: 136 EKVTEFRVKDESGLLPVGSLIKPSWFKPGQYVDLRSISKGKGFQGVMKRYGFKGLKASHG 195
Query: 265 VTKSHRRGGCIASGAGKARVYPG 287
V+ SHR GG RV PG
Sbjct: 196 VSVSHRSGGSYGQNQTPGRVLPG 218
>gi|452825008|gb|EME32007.1| 60S ribosomal protein L3 [Galdieria sulphuraria]
Length = 319
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 94/175 (53%), Gaps = 12/175 (6%)
Query: 114 SSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRK 173
S+ RTG++ + G W + G T+V V+D + YI P + + K +
Sbjct: 79 STVRTGVLARKAGMMQYWDEKGIMHPCTVV-VIDRCQVVYINPVK----------DSKGR 127
Query: 174 LGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPR 233
+G L VGA P K F +GV PKKKL F +T DA++P GT L+A HF
Sbjct: 128 VG-LQVGAGLERPYQMRKFLRMHFAYNGVEPKKKLAEFRVTEDAIVPIGTELSANHFVVG 186
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGG 288
+++DV G + +G QG M+RWGF G A+HGV+K+HR+ G + G + + P G
Sbjct: 187 QYVDVIGTSKGKGTQGAMRRWGFAGQNASHGVSKAHRKIGSVGGGRSRPQETPKG 241
>gi|403354519|gb|EJY76815.1| Ribosomal protein L3 containing protein [Oxytricha trifallax]
Length = 332
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 87/179 (48%), Gaps = 22/179 (12%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
SKR GLIG +G W K G T++Q+ + + E+ G ++
Sbjct: 65 SKRVGLIGYKMGMTHFWNKWGVHVPCTVIQIDRCQVTQVKTLEK--------DGVNSIQI 116
Query: 175 GCLLVGAESGDPSLYT--KEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRP 232
GC G+ L T K G F +PPK L F++TP+ LP G L HF+
Sbjct: 117 GC-------GEERLKTLKKPQAGHFLKYNIPPKADLAEFVVTPENFLPLGYFLGPRHFKI 169
Query: 233 REFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQ 291
+ +DVR ++ +GFQGVMKRW F G ATHG + SHR G I + R YPG V +
Sbjct: 170 GQLVDVRSTSIGKGFQGVMKRWNFSGQNATHGNSVSHRHPGSIGN-----REYPGKVFK 223
>gi|196019520|ref|XP_002118992.1| hypothetical protein TRIADDRAFT_35046 [Trichoplax adhaerens]
gi|190577417|gb|EDV18523.1| hypothetical protein TRIADDRAFT_35046 [Trichoplax adhaerens]
Length = 217
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTGLI K +G ++ +NGE T++ +VD +I+ + +E + Y G
Sbjct: 5 RTGLIAKKVGMTQIFKENGEVIPVTMI-LVDENIVLSVKTKE----KNGYNG-------- 51
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ + A P +K G F+ + + KKK+ FI+ + +L G + HF+ +++
Sbjct: 52 VQLAAFDQKPQRLSKSVKGSFEKAKISAKKKMKEFIVHENNLLKVGDKVDVNHFKKNQYV 111
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D+ G+++ +G+ G MKR FKG+ ATHGV+ SHR G RV+ G
Sbjct: 112 DITGISIGKGYAGTMKRHNFKGLEATHGVSISHRSAGSTGQCQDPGRVFKG 162
>gi|307106714|gb|EFN54959.1| hypothetical protein CHLNCDRAFT_48876 [Chlorella variabilis]
Length = 234
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 69/119 (57%)
Query: 169 EPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAA 228
+ K L +G+ S P G F +GV PK++L F ++PDA+LP G L A+
Sbjct: 30 DDKEGYTALQLGSGSKRPKQLRGTLRGHFDAAGVAPKRRLAEFRVSPDALLPVGHELRAS 89
Query: 229 HFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
HF +F+DV G ++ +GFQGVMKRWGF G PA+HG + +HR G + +V+ G
Sbjct: 90 HFVAGQFVDVTGTSIGKGFQGVMKRWGFAGQPASHGNSLAHRAAGSTGACQDPGKVFKG 148
>gi|418057097|ref|ZP_12695145.1| 50S ribosomal protein L3 [Hyphomicrobium denitrificans 1NES1]
gi|353204798|gb|EHB70210.1| 50S ribosomal protein L3 [Hyphomicrobium denitrificans 1NES1]
Length = 233
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ + E K
Sbjct: 2 RSGVIAQKVGMTRIFTDAGEHVPVTVLRLENLQVLSHRTVE-------------KNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ VG + PS TK G F + V PK+K+ F ++P+ ++ G +TA HF P +F+
Sbjct: 49 IQVGGGTRKPSRLTKADRGTFAKAEVEPKRKIAEFRVSPENLIEVGAEITADHFVPGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T +GFQG MKRW F G+ ATHGV+ +HR G +V+ G
Sbjct: 109 DVTGTTQGKGFQGAMKRWNFGGLRATHGVSVTHRAHGSTGQRQDPGKVFKG 159
>gi|300022541|ref|YP_003755152.1| 50S ribosomal protein L3 [Hyphomicrobium denitrificans ATCC 51888]
gi|299524362|gb|ADJ22831.1| 50S ribosomal protein L3 [Hyphomicrobium denitrificans ATCC 51888]
Length = 233
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ + E K
Sbjct: 2 RSGVIAQKVGMTRIFTDAGEHVPVTVLRLENLQVLSHRTVE-------------KNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ VG + PS TK G F + V PK+K+ F ++P+ ++ G +TA HF P +F+
Sbjct: 49 IQVGGGTRKPSRLTKADRGTFAKAEVEPKRKIAEFRVSPENLIDVGAEITADHFVPGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T +GFQG MKRW F G+ ATHGV+ +HR G +V+ G
Sbjct: 109 DVTGTTQGKGFQGAMKRWNFGGLRATHGVSVTHRAHGSTGQRQDPGKVFKG 159
>gi|144900884|emb|CAM77748.1| 50S ribosomal protein L3 [Magnetospirillum gryphiswaldense MSR-1]
Length = 230
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+GLI + +G ++ ++G T+++V ++ R K
Sbjct: 2 RSGLIAQKVGMTRIFTEDGTHVPVTVLKVDTVQVV-------------STRSVEKDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + K F N+ V PKKKL F + P+ +L G L+AAHF P +F+
Sbjct: 49 VQLGAGTAKVKNVAKAQRTTFANAKVEPKKKLVEFRVAPENVLEVGVELSAAHFIPGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D+ G T+ +GF G MKRW F+G+ ATHGV+ SHR G +V+ G
Sbjct: 109 DITGTTIGKGFAGGMKRWNFRGLEATHGVSVSHRSHGSTGQRQDPGKVFKG 159
>gi|347760288|ref|YP_004867849.1| 50S ribosomal protein L3P [Gluconacetobacter xylinus NBRC 3288]
gi|347579258|dbj|BAK83479.1| LSU ribosomal protein L3P [Gluconacetobacter xylinus NBRC 3288]
Length = 227
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 86/175 (49%), Gaps = 18/175 (10%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTGLI K +G L+ ++G T++QV D ++ E R Y
Sbjct: 2 RTGLIAKKLGMTRLFKEDGTHVPVTVLQVDDLQVVDVRTTE-----RDGYT--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + +K G F + V PKKKL F + DA+L G L+AAHF + +
Sbjct: 49 VQLGAGNAKVKNVSKPNRGHFAKAKVEPKKKLAEFRVADDAVLEVGASLSAAHFVAGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQ 291
DV G + +GF G MKRW F G+ ATHGV+ SHR G + R PG V +
Sbjct: 109 DVTGTSKGKGFAGAMKRWNFAGLEATHGVSISHRSHGSTGN-----RQDPGKVFK 158
>gi|145525954|ref|XP_001448788.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416354|emb|CAK81391.1| unnamed protein product [Paramecium tetraurelia]
Length = 409
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 15/172 (8%)
Query: 116 KRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLG 175
KR GLI +G W K G + T++Q+ +N +++ + + +
Sbjct: 149 KRAGLIAVKVGMTAQWDKWGYRHALTVLQLDNNQVVQVVKNDTYT--------------- 193
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREF 235
L VGA + + K G F + +PPKK + F ITP+ +LP G LTA HF P ++
Sbjct: 194 GLQVGAGAVNIKTLKKPQIGHFLKANIPPKKYIKEFPITPENVLPVGFMLTARHFTPGQY 253
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+D++G++ +GF G +KR FK PATHG + HR+ G RV+ G
Sbjct: 254 IDIQGISTGKGFGGTVKRHNFKTQPATHGNSLCHRQLGSTGQRQDPGRVFKG 305
>gi|328851231|gb|EGG00388.1| hypothetical protein MELLADRAFT_73188 [Melampsora larici-populina
98AG31]
Length = 336
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 99/198 (50%), Gaps = 22/198 (11%)
Query: 98 NTPLKIEPLQPLEI-----TTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHII- 151
T EP Q E+ T +RTG+I + G W +G + T++++ D +I
Sbjct: 41 QTETAAEPSQSSELVLPKWTPGIRRTGVIARKRGMTSFWDADGVRVPVTVLELEDVQVIG 100
Query: 152 -KYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCR 210
KY + + ++GC + S K F+++GV PK ++
Sbjct: 101 HKYHARDSY----------CAVQVGCSNRNTRNNLNSSQRK----WFEHAGVNPKHRVAE 146
Query: 211 FIITPD-AMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSH 269
F +T + +++P GT +++AHF P +F+DV+ + +GF GVMKRWGF G A+HG TK H
Sbjct: 147 FQVTDETSLVPVGTEISSAHFVPGQFVDVKANSKGKGFAGVMKRWGFSGGNASHGSTKHH 206
Query: 270 RRGGCIASGAGKARVYPG 287
R+ G RV+PG
Sbjct: 207 RKAGSTGQHQDPGRVWPG 224
>gi|145356307|ref|XP_001422374.1| Putative mitochondrial ribosomal protein L3 [Ostreococcus
lucimarinus CCE9901]
gi|144582616|gb|ABP00691.1| Putative mitochondrial ribosomal protein L3 [Ostreococcus
lucimarinus CCE9901]
Length = 211
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 81/172 (47%), Gaps = 12/172 (6%)
Query: 116 KRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLG 175
+RTG + G W G + T++ + D ++ + Y
Sbjct: 1 RRTGAVAIKTGMTCDWDARGTRIPLTVLWIDDCEVV----AAKTSSGADGYD-------- 48
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREF 235
+ VG S P TK G F K+ LC F + D +L PGT +TAAHF ++
Sbjct: 49 AVQVGYGSRKPKQVTKAELGYFVRRKTNIKRALCEFRTSADGVLAPGTAITAAHFAAGQY 108
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV+G+T +GFQG MKRWGF G PA+HG TK HR G I RV+ G
Sbjct: 109 VDVQGVTKGKGFQGPMKRWGFSGQPASHGNTKKHRAHGSIGQCQDPGRVFKG 160
>gi|328768339|gb|EGF78386.1| hypothetical protein BATDEDRAFT_13292 [Batrachochytrium
dendrobatidis JAM81]
Length = 279
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 95/179 (53%), Gaps = 16/179 (8%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
T S+RTGL+ G ++ + G+ T+++V + +I+ + + G
Sbjct: 13 FTYKSRRTGLVALKKGMTSIFDEWGQMVPVTVLEVSNCQVIR----------TRFHAGSG 62
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLF--KNSGVPPKKKLCRFIITPDAMLPPGTPLTAA 228
K + VGA S S Y LF + V PKKK+ F +TPDA +P G L A+
Sbjct: 63 KH---MVEVGAVSQRRS-YRLHRAQLFHFRKYQVSPKKKITEFDVTPDACIPSGVRLFAS 118
Query: 229 HFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
HF +++DV+G T+ +GFQGVMKRWGF G PA+HGV+ SHR G I +V+ G
Sbjct: 119 HFVAGQYVDVQGKTMGKGFQGVMKRWGFGGQPASHGVSISHRSLGSIGQCQDPGKVWKG 177
>gi|255644742|gb|ACU22873.1| unknown [Glycine max]
Length = 177
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 80/154 (51%), Gaps = 14/154 (9%)
Query: 103 IEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPN 162
IEP +P +T +SKRTGLI G LW K G + T++ V DN + + PE
Sbjct: 38 IEP-KPSAMTPNSKRTGLIAVKCGMSALWDKWGARIPITVLWVDDNIVSQIKTPE----- 91
Query: 163 RKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPG 222
K L +G TK G F+ GVP K+KL F +T DA+LP G
Sbjct: 92 --------KEGFCALQIGCGHKKDKHLTKPEVGHFRAQGVPMKRKLREFPVTEDALLPVG 143
Query: 223 TPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGF 256
T L HF P +F+D+ G+T +GFQGVMKR GF
Sbjct: 144 TSLNVRHFVPGQFVDISGITKGKGFQGVMKRHGF 177
>gi|159463470|ref|XP_001689965.1| mitochondrial ribosomal protein L3 [Chlamydomonas reinhardtii]
gi|158283953|gb|EDP09703.1| mitochondrial ribosomal protein L3 [Chlamydomonas reinhardtii]
Length = 285
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 91/177 (51%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
+T +S RTG I G W ++G + T++ V + ++ + P
Sbjct: 1 MTPTSLRTGCIATKAGMTQEWDEHGVRVPLTVLWVDECQVVGL-------------KTRP 47
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
L++G+ + G F +GVP KK + + ++ DA++P GT + AAH+
Sbjct: 48 VHGYNALMLGSGYKRQKCMSPSEAGFFLKAGVPFKKLVAEWQVSEDALVPVGTAIGAAHY 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +DV G T +GFQGVM+RWGFKG+PA+HGV+ SHR G I + +++ G
Sbjct: 108 VAGQRVDVTGWTKWKGFQGVMRRWGFKGLPASHGVSLSHRAPGSIGNRQDPGKIWKG 164
>gi|145517081|ref|XP_001444429.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124411840|emb|CAK77032.1| unnamed protein product [Paramecium tetraurelia]
Length = 409
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 15/174 (8%)
Query: 114 SSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRK 173
S KR GLI +G W K G + T++Q+ +N +++ + + +
Sbjct: 147 SPKRAGLIAVKVGMTAQWDKWGYRHALTVLQLDNNQVVQVVKNDTYT------------- 193
Query: 174 LGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPR 233
L +GA + K G F + +PPKK + F ITP+ LP G LTA HF P
Sbjct: 194 --GLQIGAGRVNIKTLKKPQIGHFLKANIPPKKYIKEFPITPENTLPVGFMLTARHFTPG 251
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+++D++G++ +GF G +KR FK PATHG + HR+ G RV+ G
Sbjct: 252 QYIDIQGISTGKGFGGTVKRHNFKTQPATHGNSLCHRQLGSTGQRQDPGRVFKG 305
>gi|302849682|ref|XP_002956370.1| mitochondrial ribosomal protein L3 [Volvox carteri f. nagariensis]
gi|300258276|gb|EFJ42514.1| mitochondrial ribosomal protein L3 [Volvox carteri f. nagariensis]
Length = 428
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 90/182 (49%), Gaps = 13/182 (7%)
Query: 106 LQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKP 165
L+ ++ +S R G I G W ++G + T++ + + ++ E
Sbjct: 141 LEKRQMADTSLRVGCIATKAGMTQEWDEHGVRVPLTVLWIDECQVVGVKTHEVHGRT--- 197
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
L++GA + G F G+P KK + + ++ DA+LP GT +
Sbjct: 198 ----------ALMLGAGHKRQKCMSPSQAGFFLKVGLPFKKLVAEWPVSEDALLPMGTHI 247
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
TAAHF + +DV G T +GFQGVMKRWGFKG PA+HGV+ SHR G I + +V+
Sbjct: 248 TAAHFVAGQRVDVTGWTKYKGFQGVMKRWGFKGQPASHGVSLSHRAPGAIGNRQDPGKVW 307
Query: 286 PG 287
G
Sbjct: 308 KG 309
>gi|209964040|ref|YP_002296955.1| 50S ribosomal protein L3 [Rhodospirillum centenum SW]
gi|226730556|sp|B6IRQ6.1|RL3_RHOCS RecName: Full=50S ribosomal protein L3
gi|209957506|gb|ACI98142.1| ribosomal protein L3 [Rhodospirillum centenum SW]
Length = 235
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+GLI + +G ++ GE T++++ ++ R E +
Sbjct: 2 RSGLIAQKLGMTRVFTDEGEHVPVTVLKLDQVQVV-------------AQRTEDRDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +GA K F + V PKKKL F +TPDA++ G +TA HF P +F+
Sbjct: 49 LQLGAGKAKVKNVAKAQREQFARAKVEPKKKLVEFRVTPDALIEVGAEITADHFVPGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G T+ RGF G M+RW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTTIGRGFTGPMRRWNFGGLRATHGVSVSHRSHGS 146
>gi|71018891|ref|XP_759676.1| hypothetical protein UM03529.1 [Ustilago maydis 521]
gi|46099434|gb|EAK84667.1| hypothetical protein UM03529.1 [Ustilago maydis 521]
Length = 373
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 96/176 (54%), Gaps = 11/176 (6%)
Query: 114 SSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRK 173
+S+R GLI G ++ NGE+ T++QV N + +I F P+ +
Sbjct: 89 TSQRVGLIAVKRGMTSFFLPNGERIPATVLQVHSNQVSAHI---GFGPDAT------EST 139
Query: 174 LGCLLVGAESGDPSLY-TKEYCGLFKNSGVPPKKKLCR-FIITPDAMLPPGTPLTAAHFR 231
L V A + + TK+ G K +G+ KK+ R F ++ DA++P GT L+A HF
Sbjct: 140 YTALQVAAVDTKSTYHVTKQIQGHLKKAGIIKGKKIIREFPVSSDALVPLGTQLSAVHFV 199
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
P + +DVR +T RGFQGVMKR GF G+ A+HGV+ SHR G + RV+PG
Sbjct: 200 PGQSVDVRAITRGRGFQGVMKRHGFHGLRASHGVSISHRSHGSTGANQDPGRVWPG 255
>gi|325191529|emb|CCA25903.1| 50S ribosomal protein L32 putative [Albugo laibachii Nc14]
Length = 280
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 82/182 (45%), Gaps = 33/182 (18%)
Query: 116 KRTGLIGKIIGQYPLWMKNG----------EKCRTTLVQVVDNHIIKYIPPEEFKPNRKP 165
KRTGL+ IG +W G EKC+ T V+ D H
Sbjct: 37 KRTGLLAVKIGMISVWDYYGVAHGCTVLQVEKCQVTQVKTSDIH---------------- 80
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
L +G P K G +GVPPK++L F ++ DA+L GT L
Sbjct: 81 -------GFNALQLGVGLRKPRNVVKPLMGHLNKAGVPPKRQLQEFRVSEDALLAAGTTL 133
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
TA HF P +++DV G + +GFQGVMK F G PA+HG +K+HR G RV+
Sbjct: 134 TAMHFVPGQYVDVCGTSKGKGFQGVMKLHNFAGQPASHGNSKTHRHMGSTGQCQDPGRVF 193
Query: 286 PG 287
G
Sbjct: 194 KG 195
>gi|379023182|ref|YP_005299843.1| 50S ribosomal protein L3 [Rickettsia canadensis str. CA410]
gi|376324120|gb|AFB21361.1| 50S ribosomal protein L3 [Rickettsia canadensis str. CA410]
Length = 215
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERIALTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ D + L HF +F+
Sbjct: 49 LVIGVKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEDNFIDVAASLEVDHFMAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ +T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITAITIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>gi|381165701|ref|ZP_09874928.1| 50S ribosomal subunit protein L3 [Phaeospirillum molischianum DSM
120]
gi|380685191|emb|CCG39740.1| 50S ribosomal subunit protein L3 [Phaeospirillum molischianum DSM
120]
Length = 238
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+GLI + +G ++ ++G T+++V ++ R E
Sbjct: 2 RSGLIAQKVGMTRIFAEDGTHLPVTVLKVDTCQVVST-------------RSEETDGYIA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + +K F + V PKKKL F ++ + +L GT L+AAHF +F+
Sbjct: 49 VQLGAGTAKVKNVSKPARANFAKAKVEPKKKLAEFRVSAENLLEVGTELSAAHFIAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GF GVMKRW F+G+ ATHGV+ SHR G +V+ G
Sbjct: 109 DVTGTTIGKGFAGVMKRWNFRGLEATHGVSVSHRSHGSTGQRQDPGKVFKG 159
>gi|402225276|gb|EJU05337.1| ribosomal protein L3 [Dacryopinax sp. DJM-731 SS1]
Length = 255
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 81/164 (49%), Gaps = 21/164 (12%)
Query: 130 LWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL----LVGAESGD 185
LW +G + T++QV + I KRK L V S D
Sbjct: 4 LWDDHGVRIPVTVLQVDHCQVTATIS---------------KRKKASLEWYHAVQVASSD 48
Query: 186 PSLYT--KEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTV 243
+ T K G F +GV K + F +T DA+L PGT L++AHF P +F+D G ++
Sbjct: 49 RTAKTTKKAMQGHFAKAGVTNKHVVREFEVTEDALLEPGTTLSSAHFVPGQFVDCTGTSI 108
Query: 244 DRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQG MK+WGF G+ A+HGV+ SHR G RV+PG
Sbjct: 109 GKGFQGTMKKWGFGGLRASHGVSISHRSQGSTGQHQDPGRVFPG 152
>gi|23014088|ref|ZP_00053925.1| COG0087: Ribosomal protein L3 [Magnetospirillum magnetotacticum
MS-1]
gi|83312229|ref|YP_422493.1| 50S ribosomal protein L3 [Magnetospirillum magneticum AMB-1]
gi|109893435|sp|Q2W2J1.1|RL3_MAGMM RecName: Full=50S ribosomal protein L3
gi|82947070|dbj|BAE51934.1| Ribosomal protein L3 [Magnetospirillum magneticum AMB-1]
Length = 229
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+GLI + +G ++ ++G T+++V ++ R K
Sbjct: 2 RSGLIAQKVGMTRIFTEDGTHVPVTVLKVDTCQVVST-------------RSVEKDGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + +K F + V PKKKL F + P+ +L GT L+AAHF P +++
Sbjct: 49 VQLGAGTAKVKNVSKPARANFAKAKVEPKKKLVEFRVAPENLLEVGTELSAAHFIPGQYV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GF G MKRW F+G+ ATHGV+ SHR G +V+ G
Sbjct: 109 DVTGTTIGKGFAGGMKRWNFRGLEATHGVSVSHRSHGSTGQRQDPGKVFKG 159
>gi|117924155|ref|YP_864772.1| 50S ribosomal protein L3P [Magnetococcus marinus MC-1]
gi|212288406|sp|A0L5X3.1|RL3_MAGSM RecName: Full=50S ribosomal protein L3
gi|117607911|gb|ABK43366.1| LSU ribosomal protein L3P [Magnetococcus marinus MC-1]
Length = 214
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 13/169 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+GLIG+ +G ++ ++G++ TLVQ+ ++ E+ N
Sbjct: 2 RSGLIGRKLGMSQMFTEDGQRIPVTLVQLGPCAVVAKRSDEQDGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G E PS +K G + + V P++ L F ++ G LTA F F+
Sbjct: 49 VQLGFEEAKPSRLSKTVRGQYAKANVTPRRVLREFRVSNPESYEVGQELTAEQFAVDSFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
DV G TV +GF GVMKRWGF+G A+HG K HR GG I RVY
Sbjct: 109 DVTGKTVGKGFAGVMKRWGFRGGRASHGAHKVHRSGGSIGQCQTPGRVY 157
>gi|383486650|ref|YP_005404330.1| 50S ribosomal protein L3 [Rickettsia prowazekii str. GvV257]
gi|380757015|gb|AFE52252.1| 50S ribosomal protein L3 [Rickettsia prowazekii str. GvV257]
Length = 216
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + +G ++ GE+ TLV+V D ++ ++ K
Sbjct: 2 RTGIIAQKVGMTSVFNDKGERISLTLVKVDDCQVV-------------GHKTLAKHGYNA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ D + + L HFR +F+
Sbjct: 49 LIIGVKDQKISKVTKPMKQVFANAKIAPKTKLKEFRISEDNFIDIASILEVDHFRVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>gi|188581375|ref|YP_001924820.1| 50S ribosomal protein L3 [Methylobacterium populi BJ001]
gi|226730534|sp|B1ZLK4.1|RL3_METPB RecName: Full=50S ribosomal protein L3
gi|179344873|gb|ACB80285.1| ribosomal protein L3 [Methylobacterium populi BJ001]
Length = 246
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++Q+ ++ +R K
Sbjct: 2 RSGVIARKVGMTRVFTDAGEHVPVTVLQIDQCQVV-------------AHRTTEKDGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L VG ++ G F + V PKKKL F ++ DA++P G +TA HF P +F+
Sbjct: 49 LQVGVGKAKVKNVSQAERGRFAVAKVEPKKKLAEFRVSEDALIPVGAEITADHFIPGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G T +GF G MKRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTTTGKGFAGGMKRWNFGGLRATHGVSISHRSIGS 146
>gi|15604505|ref|NP_221023.1| 50S ribosomal protein L3 [Rickettsia prowazekii str. Madrid E]
gi|383488058|ref|YP_005405737.1| 50S ribosomal protein L3 [Rickettsia prowazekii str. Chernikova]
gi|383488903|ref|YP_005406581.1| 50S ribosomal protein L3 [Rickettsia prowazekii str. Katsinyian]
gi|383489743|ref|YP_005407420.1| 50S ribosomal protein L3 [Rickettsia prowazekii str. Dachau]
gi|383499883|ref|YP_005413244.1| 50S ribosomal protein L3 [Rickettsia prowazekii str. BuV67-CWPP]
gi|383500720|ref|YP_005414080.1| 50S ribosomal protein L3 [Rickettsia prowazekii str. RpGvF24]
gi|386082523|ref|YP_005999100.1| 50S ribosomal protein L3 [Rickettsia prowazekii str. Rp22]
gi|6226691|sp|P48952.2|RL3_RICPR RecName: Full=50S ribosomal protein L3
gi|3861199|emb|CAA15099.1| 50S RIBOSOMAL PROTEIN L3 (rplC) [Rickettsia prowazekii str. Madrid
E]
gi|292572287|gb|ADE30202.1| 50S ribosomal protein L3 [Rickettsia prowazekii str. Rp22]
gi|380758417|gb|AFE53653.1| 50S ribosomal protein L3 [Rickettsia prowazekii str. RpGvF24]
gi|380760937|gb|AFE49459.1| 50S ribosomal protein L3 [Rickettsia prowazekii str. Chernikova]
gi|380761782|gb|AFE50303.1| 50S ribosomal protein L3 [Rickettsia prowazekii str. Katsinyian]
gi|380762629|gb|AFE51149.1| 50S ribosomal protein L3 [Rickettsia prowazekii str. BuV67-CWPP]
gi|380763466|gb|AFE51985.1| 50S ribosomal protein L3 [Rickettsia prowazekii str. Dachau]
Length = 216
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + +G ++ GE+ TLV+V D ++ ++ K
Sbjct: 2 RTGIIAQKVGMTSVFNDKGERISLTLVKVDDCQVV-------------GHKTLAKHGYNA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ D + + L HFR +F+
Sbjct: 49 LVIGVKDQKISKVTKPMKQVFANAKIAPKTKLKEFRISEDNFIDIASILEVDHFRVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>gi|301104340|ref|XP_002901255.1| 50S ribosomal protein L3-2 [Phytophthora infestans T30-4]
gi|262101189|gb|EEY59241.1| 50S ribosomal protein L3-2 [Phytophthora infestans T30-4]
Length = 285
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 13/172 (7%)
Query: 116 KRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLG 175
KRTGL+ IG P+W G + T++QV + + + + +
Sbjct: 38 KRTGLLAVKIGMMPVWDNFGYRHNCTVLQVEECQVTQV-------------KTADRHGFN 84
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREF 235
L +G P +K G +GVP K++L F ++ DA+LP GT L+A HF ++
Sbjct: 85 ALQLGVGLRKPKNVSKPVLGHLSKAGVPAKRQLQEFRVSEDALLPLGTTLSALHFNAGQY 144
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G++ +GFQGVMK F G PA+HG +K+ R G +V+ G
Sbjct: 145 VDVCGISKGKGFQGVMKLHNFAGQPASHGNSKTQRHMGSTGQCQDPGKVFKG 196
>gi|91205877|ref|YP_538232.1| 50S ribosomal protein L3 [Rickettsia bellii RML369-C]
gi|157826764|ref|YP_001495828.1| 50S ribosomal protein L3 [Rickettsia bellii OSU 85-389]
gi|109893551|sp|Q1RHM1.1|RL3_RICBR RecName: Full=50S ribosomal protein L3
gi|166234585|sp|A8GVB4.1|RL3_RICB8 RecName: Full=50S ribosomal protein L3
gi|91069421|gb|ABE05143.1| 50S ribosomal protein L3 [Rickettsia bellii RML369-C]
gi|157802068|gb|ABV78791.1| 50S ribosomal protein L3 [Rickettsia bellii OSU 85-389]
Length = 215
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + +G ++ NG++ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKVGMTSVFNNNGKRVPLTLVKVDDCQVVGHKIAEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ V PK KL F I+ D + L HF +F+
Sbjct: 49 LVIGIKDKKISRVTKPMKQVFANAKVSPKTKLKEFRISEDNFIDIAASLEVDHFTAGQFI 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
DV T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DVTATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>gi|379713548|ref|YP_005301886.1| 50S ribosomal protein L3 [Rickettsia massiliae str. AZT80]
gi|376334194|gb|AFB31426.1| 50S ribosomal protein L3 [Rickettsia massiliae str. AZT80]
Length = 215
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + +G ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKVGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + + T L HF +F+
Sbjct: 49 LVIGVKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEEHFIDIATSLEVDHFTAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>gi|170738703|ref|YP_001767358.1| 50S ribosomal protein L3 [Methylobacterium sp. 4-46]
gi|226730536|sp|B0UHW9.1|RL3_METS4 RecName: Full=50S ribosomal protein L3
gi|168192977|gb|ACA14924.1| ribosomal protein L3 [Methylobacterium sp. 4-46]
Length = 246
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T+++V ++ +R K
Sbjct: 2 RSGVIAQKVGMTRVFTDAGEHVPVTVLKVDQCQVV-------------AHRTVEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L VG +K G F + V PK+KL F +T DA++P G +TA HF P +F+
Sbjct: 49 LQVGVGKAKVKNVSKAERGRFAIAKVEPKRKLAEFRVTEDALIPVGAEITADHFIPGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G T +GF G MKRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTTTGKGFAGGMKRWNFGGLRATHGVSISHRSIGS 146
>gi|157804035|ref|YP_001492584.1| 50S ribosomal protein L3 [Rickettsia canadensis str. McKiel]
gi|166234586|sp|A8EZL6.1|RL3_RICCK RecName: Full=50S ribosomal protein L3
gi|157785298|gb|ABV73799.1| 50S ribosomal protein L3 [Rickettsia canadensis str. McKiel]
Length = 215
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERIALTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + + L HF +F+
Sbjct: 49 LVIGVKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEENFIDVAASLEVDHFMAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ +T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITAITIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>gi|281212110|gb|EFA86271.1| ribosomal protein L3 [Polysphondylium pallidum PN500]
Length = 338
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 112 TTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPK 171
T + R G IGK +G +W+ + T+V + +N +++ + +
Sbjct: 54 TKQTHRVGAIGKKVGMTTVWVDH-VAIPVTVVHLPNNQVVQV-------------KHKVN 99
Query: 172 RKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFR 231
+ L VGA+ G F + VPPK+ L F +T +A LP GT +T HF
Sbjct: 100 DGVDALQVGADEIRLKNVKGTMKGHFAKADVPPKRILMEFPVTRNAFLPVGTQITPRHFV 159
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
P + + ++G++ +GFQG MKRW F G+ ATHGV+ SHR G RV+ G
Sbjct: 160 PGQLVTIKGVSTGKGFQGGMKRWNFSGLAATHGVSVSHRSIGSTGCRQTPGRVFKG 215
>gi|163851585|ref|YP_001639628.1| 50S ribosomal protein L3 [Methylobacterium extorquens PA1]
gi|240138753|ref|YP_002963225.1| 50S ribosomal protein L3 [Methylobacterium extorquens AM1]
gi|254561353|ref|YP_003068448.1| 50S ribosomal protein L3 [Methylobacterium extorquens DM4]
gi|418058028|ref|ZP_12696009.1| 50S ribosomal protein L3 [Methylobacterium extorquens DSM 13060]
gi|226730532|sp|A9W4Q1.1|RL3_METEP RecName: Full=50S ribosomal protein L3
gi|163663190|gb|ABY30557.1| ribosomal protein L3 [Methylobacterium extorquens PA1]
gi|240008722|gb|ACS39948.1| 50S ribosomal subunit protein L3 [Methylobacterium extorquens AM1]
gi|254268631|emb|CAX24590.1| 50S ribosomal subunit protein L3 [Methylobacterium extorquens DM4]
gi|373568356|gb|EHP94304.1| 50S ribosomal protein L3 [Methylobacterium extorquens DSM 13060]
Length = 246
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++Q+ ++ +R K
Sbjct: 2 RSGVIARKVGMTRVFTDAGEHVPVTVLQIDQCQVV-------------AHRTTEKDGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L VG ++ G F + V PKKKL F ++ DA++P G +TA HF P +F+
Sbjct: 49 LQVGVGKAKVKNVSQAERGRFAVAKVEPKKKLAEFRVSEDALIPVGAEITADHFIPGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G + +GF G MKRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTSTGKGFAGGMKRWNFGGLRATHGVSISHRSIGS 146
>gi|157964806|ref|YP_001499630.1| 50S ribosomal protein L3 [Rickettsia massiliae MTU5]
gi|166990939|sp|A8F2E7.1|RL3_RICM5 RecName: Full=50S ribosomal protein L3
gi|157844582|gb|ABV85083.1| 50S ribosomal protein L3 [Rickettsia massiliae MTU5]
Length = 215
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + +G ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKVGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + + T L HF +F+
Sbjct: 49 LVIGVKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEEHFIDIATSLEVDHFTAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFRGKKMAGHMGC 168
>gi|218530394|ref|YP_002421210.1| 50S ribosomal protein L3 [Methylobacterium extorquens CM4]
gi|254803680|sp|B7L0R1.1|RL3_METC4 RecName: Full=50S ribosomal protein L3
gi|218522697|gb|ACK83282.1| ribosomal protein L3 [Methylobacterium extorquens CM4]
Length = 246
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++Q+ ++ +R K
Sbjct: 2 RSGVIARKVGMTRVFTDAGEHVPVTVLQIDQCQVV-------------AHRTTEKDGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L VG ++ G F + V PKKKL F ++ DA++P G +TA HF P +F+
Sbjct: 49 LQVGVGKAKVKNVSQAERGRFAVAKVEPKKKLAEFRVSEDALIPVGAEITADHFIPGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G + +GF G MKRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTSTGKGFAGGMKRWNFGGLRATHGVSISHRSIGS 146
>gi|349699374|ref|ZP_08901003.1| 50S ribosomal protein L3 [Gluconacetobacter europaeus LMG 18494]
Length = 227
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTGLI K +G L+ ++G T++QV D ++ E R Y
Sbjct: 2 RTGLIAKKLGMTRLFKEDGTHVPVTVLQVDDLQVVDVRTTE-----RDGYT--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G+ +K G F + V PKKKL F + DA+L G L+A HF + +
Sbjct: 49 VQLGSGKAKVKNVSKPNRGHFAKAKVEPKKKLAEFRVADDAVLEVGASLSATHFVVGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQ 291
DV G + +GF G MKRW F G+ ATHGV+ SHR G + R PG V +
Sbjct: 109 DVTGTSKGKGFAGAMKRWNFAGLEATHGVSISHRSHGSTGN-----RQDPGKVFK 158
>gi|389694570|ref|ZP_10182664.1| 50S ribosomal protein L3, bacterial [Microvirga sp. WSM3557]
gi|388587956|gb|EIM28249.1| 50S ribosomal protein L3, bacterial [Microvirga sp. WSM3557]
Length = 242
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T+++V ++ +R + K
Sbjct: 2 RSGVIAQKVGMTRIFTDAGEHVPVTVLKVDSCQVV-------------AHRTKEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L VG +K G F + V PK+KL F ++ DA++P G +TA HF +F+
Sbjct: 49 LQVGVGKAKVKNVSKAERGSFAVAQVEPKRKLAEFRVSEDAVIPVGAEITADHFVAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G+T +GF G MKRW F G+ A+HGV+ SHR G
Sbjct: 109 DVTGITTGKGFAGGMKRWNFGGLRASHGVSISHRSIGS 146
>gi|452965940|gb|EME70957.1| 50S ribosomal protein L3 [Magnetospirillum sp. SO-1]
Length = 229
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+GLI + +G ++ +G T+++V ++ R K
Sbjct: 2 RSGLIAQKVGMTRIFTADGAHVPVTVLKVDTCQVV-------------STRSVEKDGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + +K F + V PKKKL F +T + +L GT L+AAHF P +++
Sbjct: 49 VQLGAGTAKVKNVSKPARANFAKAKVEPKKKLVEFRVTAENVLDVGTELSAAHFIPGQYV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GF G MKRW F+G+ ATHGV+ SHR G +V+ G
Sbjct: 109 DVTGTTIGKGFAGGMKRWNFRGLEATHGVSVSHRSHGSTGQRQDPGKVFKG 159
>gi|229587009|ref|YP_002845510.1| 50S ribosomal protein L3 [Rickettsia africae ESF-5]
gi|259709733|sp|C3PPA7.1|RL3_RICAE RecName: Full=50S ribosomal protein L3
gi|228022059|gb|ACP53767.1| 50S ribosomal protein L3 [Rickettsia africae ESF-5]
Length = 215
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L+VG + S TK +F N+ + PK KL F I+ + + L HF +F+
Sbjct: 49 LVVGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>gi|87199270|ref|YP_496527.1| 50S ribosomal protein L3 [Novosphingobium aromaticivorans DSM
12444]
gi|109893532|sp|Q2G8Y0.1|RL3_NOVAD RecName: Full=50S ribosomal protein L3
gi|87134951|gb|ABD25693.1| LSU ribosomal protein L3P [Novosphingobium aromaticivorans DSM
12444]
Length = 251
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 13/169 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++ + + ++ E R Y
Sbjct: 2 RTGVIAKKVGMTRLFQEDGRHVPVTVLSLENCQVVSVRTAE-----RDGYV--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +GA K F + VP K ++ F + DA+L G+ + A+HF P +++
Sbjct: 49 LQLGAGEAKQKNVAKPQREHFAKAEVPLKMEVAEFRVADDALLDVGSTIAASHFVPGQYV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
D+ G T +GFQG MKRWGF GM ATHGV+ SHR G + RV+
Sbjct: 109 DITGQTQGKGFQGAMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVF 157
>gi|379019483|ref|YP_005295717.1| 50S ribosomal protein L3 [Rickettsia rickettsii str. Hlp#2]
gi|376332063|gb|AFB29297.1| 50S ribosomal protein L3 [Rickettsia rickettsii str. Hlp#2]
Length = 215
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + + L HF +F+
Sbjct: 49 LVIGVKDKKVSRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>gi|383312962|ref|YP_005365763.1| 50S ribosomal protein L3 [Candidatus Rickettsia amblyommii str.
GAT-30V]
gi|378931622|gb|AFC70131.1| 50S ribosomal protein L3 [Candidatus Rickettsia amblyommii str.
GAT-30V]
Length = 215
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + + L HF +F+
Sbjct: 49 LVIGVKDKKISRVTKPMKQVFANAQISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>gi|260752974|ref|YP_003225867.1| 50S ribosomal protein L3 [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|258552337|gb|ACV75283.1| ribosomal protein L3 [Zymomonas mobilis subsp. mobilis NCIMB 11163]
Length = 242
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 13/169 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++++ D ++ + + +
Sbjct: 2 RTGVIAKKVGMTRLFQEDGRHVPVTVLKLEDVQVV-------------AVKNKDQDGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA S TK G F + V K KL F ++ DA+L GT ++A HF + +
Sbjct: 49 VQLGAGSAKAKNVTKPVRGHFAKAEVELKAKLVEFPVSEDAVLEVGTSISADHFIAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
D+ G T +GF G MKRWGF G+ ATHGV+ SHR G + RV+
Sbjct: 109 DISGQTQGKGFAGAMKRWGFGGLRATHGVSLSHRSHGSTGNRQDPGRVF 157
>gi|86135762|ref|ZP_01054341.1| 50S ribosomal protein L3 [Roseobacter sp. MED193]
gi|85826636|gb|EAQ46832.1| 50S ribosomal protein L3 [Roseobacter sp. MED193]
Length = 236
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++ + ++ R + K
Sbjct: 2 RSGIIAKKVGMTRLFMEDGQQIPVTVLHLDGLQVV-------------SQRTDDKDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA S +K G F S V PK+KL F + DA++ G ++A HF + +
Sbjct: 49 VQLGAGSAKAKRTSKAMRGHFAASKVEPKRKLVEFRVPADALIEVGAEISAEHFLEGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKRW F G+ ATHGV+ SHR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGAMKRWNFGGLRATHGVSISHRSHGSTGQCQDPGKVFKG 159
>gi|397676627|ref|YP_006518165.1| 50S ribosomal protein L3 [Zymomonas mobilis subsp. mobilis ATCC
29191]
gi|395397316|gb|AFN56643.1| 50S ribosomal protein L3 [Zymomonas mobilis subsp. mobilis ATCC
29191]
Length = 242
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 13/169 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++++ D ++ + + +
Sbjct: 2 RTGVIAKKVGMTRLFQEDGRHVPVTVLKLEDVQVV-------------AVKNKDQDGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA S TK G F + V K KL F ++ DA+L GT ++A HF + +
Sbjct: 49 VQLGAGSAKAKNVTKPVRGHFAKAEVELKAKLVEFPVSEDAVLEVGTSISADHFIAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
D+ G T +GF G MKRWGF G+ ATHGV+ SHR G + RV+
Sbjct: 109 DISGQTQGKGFAGAMKRWGFGGLRATHGVSLSHRSHGSTGNRQDPGRVF 157
>gi|56551413|ref|YP_162252.1| 50S ribosomal protein L3 [Zymomonas mobilis subsp. mobilis ZM4]
gi|384411964|ref|YP_005621329.1| 50S ribosomal protein L3 [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|81820917|sp|Q5NQ64.1|RL3_ZYMMO RecName: Full=50S ribosomal protein L3
gi|56542987|gb|AAV89141.1| ribosomal protein L3 [Zymomonas mobilis subsp. mobilis ZM4]
gi|335932338|gb|AEH62878.1| 50S ribosomal protein L3 [Zymomonas mobilis subsp. mobilis ATCC
10988]
Length = 242
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 13/169 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++++ D ++ + + +
Sbjct: 2 RTGVIAKKVGMTRLFQEDGRHVPVTVLKLEDVQVV-------------AVKNKDQDGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA S TK G F + V K KL F ++ DA+L GT ++A HF + +
Sbjct: 49 VQLGAGSAKAKNVTKPVRGHFAKAEVELKAKLVEFPVSEDAVLEVGTSISADHFIAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
D+ G T +GF G MKRWGF G+ ATHGV+ SHR G + RV+
Sbjct: 109 DISGQTQGKGFAGAMKRWGFGGLRATHGVSLSHRSHGSTGNRQDPGRVF 157
>gi|349605778|gb|AEQ00897.1| 39S ribosomal protein L3, mitochondrial-like protein, partial
[Equus caballus]
Length = 159
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 222 GTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK 281
GTPL AAHFRP +++DV T+ +GFQGVMKRWGFKG PATHG TK+HRR G I++G
Sbjct: 1 GTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTG-DV 59
Query: 282 ARVYPG 287
ARV+PG
Sbjct: 60 ARVWPG 65
>gi|374319603|ref|YP_005066102.1| 50S ribosomal protein L3 [Rickettsia slovaca 13-B]
gi|383751645|ref|YP_005426746.1| 50S ribosomal protein L3 [Rickettsia slovaca str. D-CWPP]
gi|360042152|gb|AEV92534.1| 50S ribosomal protein L3 [Rickettsia slovaca 13-B]
gi|379774659|gb|AFD20015.1| 50S ribosomal protein L3 [Rickettsia slovaca str. D-CWPP]
Length = 215
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + + L HF +F+
Sbjct: 49 LVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>gi|347529949|ref|YP_004836697.1| 50S ribosomal protein L3 [Sphingobium sp. SYK-6]
gi|345138631|dbj|BAK68240.1| 50S ribosomal protein L3 [Sphingobium sp. SYK-6]
Length = 253
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 13/169 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ +G T++ + N +I R + +
Sbjct: 2 RTGVIAKKVGMTRLFQDDGRHVPVTVLALEGNQVI-------------ARREQDRDGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA K G F + V PK ++ F + DA+L G + A HF +F+
Sbjct: 49 VQLGAGVAKAKNVAKPQRGHFAKAEVEPKAQVAEFRVAEDALLDVGAEIAADHFVAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
DV G T +GF G MKRWGF GM ATHGV+ SHR G + RV+
Sbjct: 109 DVTGHTQGKGFAGAMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVF 157
>gi|379712750|ref|YP_005301089.1| 50S ribosomal protein L3 [Rickettsia philipii str. 364D]
gi|376329395|gb|AFB26632.1| 50S ribosomal protein L3 [Rickettsia philipii str. 364D]
Length = 215
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + + L HF +F+
Sbjct: 49 LVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFMAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>gi|157828860|ref|YP_001495102.1| 50S ribosomal protein L3 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933587|ref|YP_001650376.1| 50S ribosomal protein L3 [Rickettsia rickettsii str. Iowa]
gi|238650972|ref|YP_002916828.1| 50S ribosomal protein L3 [Rickettsia peacockii str. Rustic]
gi|378721683|ref|YP_005286570.1| 50S ribosomal protein L3 [Rickettsia rickettsii str. Colombia]
gi|378723030|ref|YP_005287916.1| 50S ribosomal protein L3 [Rickettsia rickettsii str. Arizona]
gi|378724384|ref|YP_005289268.1| 50S ribosomal protein L3 [Rickettsia rickettsii str. Hauke]
gi|379018169|ref|YP_005294404.1| 50S ribosomal protein L3 [Rickettsia rickettsii str. Hino]
gi|383484335|ref|YP_005393248.1| 50S ribosomal protein L3 [Rickettsia parkeri str. Portsmouth]
gi|166234587|sp|A8GT69.1|RL3_RICRS RecName: Full=50S ribosomal protein L3
gi|189029476|sp|B0BUR0.1|RL3_RICRO RecName: Full=50S ribosomal protein L3
gi|259709734|sp|C4K2H9.1|RL3_RICPU RecName: Full=50S ribosomal protein L3
gi|157801341|gb|ABV76594.1| 50S ribosomal protein L3 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908674|gb|ABY72970.1| LSU ribosomal protein L3P [Rickettsia rickettsii str. Iowa]
gi|238625070|gb|ACR47776.1| 50S ribosomal protein L3 [Rickettsia peacockii str. Rustic]
gi|376326707|gb|AFB23946.1| 50S ribosomal protein L3 [Rickettsia rickettsii str. Colombia]
gi|376328054|gb|AFB25292.1| 50S ribosomal protein L3 [Rickettsia rickettsii str. Arizona]
gi|376330735|gb|AFB27971.1| 50S ribosomal protein L3 [Rickettsia rickettsii str. Hino]
gi|376333399|gb|AFB30632.1| 50S ribosomal protein L3 [Rickettsia rickettsii str. Hauke]
gi|378936689|gb|AFC75189.1| 50S ribosomal protein L3 [Rickettsia parkeri str. Portsmouth]
Length = 215
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + + L HF +F+
Sbjct: 49 LVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>gi|15892929|ref|NP_360643.1| 50S ribosomal protein L3 [Rickettsia conorii str. Malish 7]
gi|42559674|sp|Q92GW6.1|RL3_RICCN RecName: Full=50S ribosomal protein L3
gi|15620121|gb|AAL03544.1| 50S ribosomal protein L3 [Rickettsia conorii str. Malish 7]
Length = 215
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + + L HF +F+
Sbjct: 49 LVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>gi|34581369|ref|ZP_00142849.1| 50S ribosomal protein L3 [Rickettsia sibirica 246]
gi|28262754|gb|EAA26258.1| 50S ribosomal protein L3 [Rickettsia sibirica 246]
Length = 215
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + + L HF +F+
Sbjct: 49 LVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISAENFIDIAASLEVDHFTAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>gi|197104696|ref|YP_002130073.1| 50S ribosomal protein L3 [Phenylobacterium zucineum HLK1]
gi|226730544|sp|B4R8L7.1|RL3_PHEZH RecName: Full=50S ribosomal protein L3
gi|196478116|gb|ACG77644.1| 50S ribosomal protein L3 [Phenylobacterium zucineum HLK1]
Length = 261
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G + + G T++ + ++ +R + K
Sbjct: 2 RTGVIAKKLGMARFFDEAGVHVPVTVLSLEGCQVV-------------AHRTKDKDGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +GA S P +K G F V PK KL F ++ D ++ G LTA HF P + +
Sbjct: 49 LQLGAGSKKPKNTSKGLRGHFAKGQVEPKAKLVEFKVSEDNLIDVGAELTADHFVPGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D+ G TV +GF G MKRW F G+ ATHGV+ SHR G R +PG
Sbjct: 109 DITGTTVGKGFAGAMKRWNFGGLRATHGVSVSHRSHGSTGQRQDPGRTFPG 159
>gi|320582593|gb|EFW96810.1| Mitochondrial ribosomal protein of the large subunit [Ogataea
parapolymorpha DL-1]
Length = 272
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 86/174 (49%), Gaps = 19/174 (10%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHII--KYIPPEEFKPNRKPYRGEPKRKL 174
R GLIG G + +NG++ T++++ ++ K + + + Y + K +
Sbjct: 55 RPGLIGVKRGMTQFYSRNGDRVPATVLEIDQVEVVYNKTVDKNGYYAVQVGYGHKLKNQ- 113
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRF-IITPDAMLPPGTPLTAAHFRPR 233
TK G ++N+ V PK+ L F + + ++P G+ L A HF+P
Sbjct: 114 ---------------TKAMLGHYRNAKVSPKETLFEFEVKDENGLVPVGSQLKADHFKPG 158
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+F+DV T +GF GVMKRW F G+PATHG + +HR G ARV PG
Sbjct: 159 QFVDVISKTKGKGFSGVMKRWNFSGLPATHGTSLAHRSAGSTGMNTTPARVLPG 212
>gi|220921899|ref|YP_002497200.1| 50S ribosomal protein L3 [Methylobacterium nodulans ORS 2060]
gi|254803681|sp|B8IS85.1|RL3_METNO RecName: Full=50S ribosomal protein L3
gi|219946505|gb|ACL56897.1| ribosomal protein L3 [Methylobacterium nodulans ORS 2060]
Length = 251
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T+++V ++ +R K
Sbjct: 2 RSGVIAQKVGMTRVFTDAGEHVPVTVLKVDQCQVV-------------AHRTVEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L VG +K G F + V PK+KL F ++ DA++P G +TA HF P +F+
Sbjct: 49 LQVGVGKAKVKNVSKAERGRFAIAKVEPKRKLAEFRVSEDALIPVGAEITADHFIPGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G+T +GF G MKRW F G+ A+HGV+ SHR G
Sbjct: 109 DVTGITTGKGFAGGMKRWNFGGLRASHGVSISHRSIGS 146
>gi|296533987|ref|ZP_06896503.1| 50S ribosomal protein L3 [Roseomonas cervicalis ATCC 49957]
gi|296265653|gb|EFH11762.1| 50S ribosomal protein L3 [Roseomonas cervicalis ATCC 49957]
Length = 228
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 13/167 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
+ + RTGLI K +G L+ +G T++ + ++ R E
Sbjct: 1 MAAKNGRTGLIAKKLGMTRLFNDDGSTVPVTVLHLDQVRVV-------------AARTEE 47
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
K + +G P +K G F +GV KK+ F + DAML PG L+A HF
Sbjct: 48 KDGYNAVQLGFGLAKPKNVSKPNKGHFAKAGVEAPKKVVEFRVAADAMLEPGAKLSANHF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
+ +DV G + +GF G MKRW F G+ ATHGV+ SHR G +
Sbjct: 108 VKGQIVDVTGTSKGKGFAGAMKRWNFSGLEATHGVSISHRSHGSTGN 154
>gi|341584194|ref|YP_004764685.1| 50S ribosomal protein L3 [Rickettsia heilongjiangensis 054]
gi|350273787|ref|YP_004885100.1| 50S ribosomal protein L3 [Rickettsia japonica YH]
gi|379016070|ref|YP_005292305.1| 50S ribosomal protein L3 [Rickettsia rickettsii str. Brazil]
gi|340808419|gb|AEK75007.1| 50S ribosomal protein L3 [Rickettsia heilongjiangensis 054]
gi|348593000|dbj|BAK96961.1| 50S ribosomal protein L3 [Rickettsia japonica YH]
gi|376324594|gb|AFB21834.1| 50S ribosomal protein L3 [Rickettsia rickettsii str. Brazil]
Length = 215
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + + L HF +F+
Sbjct: 49 LVIGIKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>gi|383481896|ref|YP_005390811.1| 50S ribosomal protein L3 [Rickettsia rhipicephali str.
3-7-female6-CWPP]
gi|378934235|gb|AFC72738.1| 50S ribosomal protein L3 [Rickettsia rhipicephali str.
3-7-female6-CWPP]
Length = 215
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + +G ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKVGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + + L HF +F+
Sbjct: 49 LVIGVKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEEHFIDIAASLEVDHFTAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFTGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>gi|126732274|ref|ZP_01748074.1| ribosomal protein L3 [Sagittula stellata E-37]
gi|126707143|gb|EBA06209.1| ribosomal protein L3 [Sagittula stellata E-37]
Length = 279
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 88/171 (51%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K IG ++M++G++ T++Q+ + ++ E G LGC
Sbjct: 2 RSGVIAKKIGMTRVFMEDGKQIPVTVLQLDNLQVVAQRTDE--------TNGYSAVALGC 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
A+ ++ +F N+GV PK+K+ F + P+ ++ G + A H+ +F+
Sbjct: 54 GTAKAKRTSQAMRK-----VFSNAGVEPKRKIVEFRVAPENLIEVGEEIIADHYFEGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G+T+ +GF G MKR F G+ ATHGV+ SHR G +V+ G
Sbjct: 109 DVSGITIGKGFAGGMKRHNFGGLRATHGVSISHRSHGSTGQCQNPGKVFKG 159
>gi|402821889|ref|ZP_10871405.1| 50S ribosomal protein L3 [Sphingomonas sp. LH128]
gi|402264612|gb|EJU14459.1| 50S ribosomal protein L3 [Sphingomonas sp. LH128]
Length = 251
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++ + D ++ R E +
Sbjct: 2 RTGVIAKKVGMTRLFQEDGRHVPVTVLALEDCQVV-------------SVRTEERDGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA K F + VP K ++ F + DA+L G + A+HF P + +
Sbjct: 49 VQLGAGEAKQKNVAKPQREHFAKAQVPLKMRVAEFRVADDALLEVGATIAASHFVPGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQ 291
DV G T +GFQG MKRWGF GM ATHGV+ SHR A G+ R PG V +
Sbjct: 109 DVGGHTQGKGFQGAMKRWGFGGMRATHGVSISHR-----AHGSTGNRQDPGKVFK 158
>gi|402703208|ref|ZP_10851187.1| 50S ribosomal protein L3 [Rickettsia helvetica C9P9]
Length = 215
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + + L HF +F+
Sbjct: 49 LVIGVKDKKISRVTKPMKQVFANAKMSPKTKLKEFRISEENFIDIAASLEVDHFTAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>gi|406605185|emb|CCH43344.1| 50S ribosomal protein L3 [Wickerhamomyces ciferrii]
Length = 276
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 85/173 (49%), Gaps = 15/173 (8%)
Query: 117 RTGLIGKIIGQYPLW-MKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLG 175
RTGLI G P + K GEK TL+QV + ++ PE
Sbjct: 63 RTGLIAIKRGMAPYFDKKTGEKFGVTLLQVENLEVLYNKTPEL-------------NGYY 109
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPRE 234
+ +G S P ++ G F +GV PK + F + ++ +LP GT L HF+P +
Sbjct: 110 AVQIGYGSKSPYKTSRGLLGHFAKAGVNPKSFVKEFQVKDESGLLPIGTELKVNHFQPGQ 169
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV+G++ +GF GVMKRWGFKG+ A+HG + HR GG R+ G
Sbjct: 170 LIDVKGVSKGKGFAGVMKRWGFKGLRASHGTSIMHRHGGSYGQNQDPGRIDKG 222
>gi|427429420|ref|ZP_18919455.1| LSU ribosomal protein L3p (L3e) [Caenispirillum salinarum AK4]
gi|425880613|gb|EKV29309.1| LSU ribosomal protein L3p (L3e) [Caenispirillum salinarum AK4]
Length = 250
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTGLI + +G ++ GE T+++V ++ R K
Sbjct: 2 RTGLIAQKVGMTRMYNDAGEHVPVTVLKVDGLQVV-------------AQRTADKEGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA +K G F + V PK+KL F ++ D +L PG L+ AHF +F+
Sbjct: 49 VQLGAGKAKVKNVSKALRGHFAKAKVEPKRKLAEFRVSEDCLLDPGVALSPAHFVAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G+++ +GF G MKR F+G+ ATHGV+ SHR G +V+ G
Sbjct: 109 DVTGISIGKGFAGGMKRHNFRGLEATHGVSISHRSHGSTGQCQDPGKVFKG 159
>gi|310817008|ref|YP_003964972.1| 50S ribosomal protein L3 [Ketogulonicigenium vulgare Y25]
gi|385234596|ref|YP_005795938.1| 50S ribosomal protein L3 [Ketogulonicigenium vulgare WSH-001]
gi|308755743|gb|ADO43672.1| 50S ribosomal protein L3 [Ketogulonicigenium vulgare Y25]
gi|343463507|gb|AEM41942.1| Ribosomal protein L3 [Ketogulonicigenium vulgare WSH-001]
Length = 237
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G I K IG L++++G + T++Q + ++ R K
Sbjct: 5 RSGTIAKKIGMTRLFLEDGRQVPVTVLQFENLQVV-------------AQRTVEKDGYTA 51
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + T+ G F + V PK+KL F +TP+ ++P G + A H+ +F+
Sbjct: 52 VQLGAGTAKAKNVTQPMRGHFAAAKVEPKRKLAEFRVTPENLIPVGAEIIADHYVAGQFV 111
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D+ G ++ +GF GVMKR F G+ A+HGV+ SHR G + R++ G
Sbjct: 112 DISGTSIGKGFAGVMKRHNFGGLRASHGVSVSHRSHGSVGQCQDPGRIFKG 162
>gi|239948319|ref|ZP_04700072.1| 50S ribosomal protein L3 [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239922595|gb|EER22619.1| 50S ribosomal protein L3 [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 215
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S K +F N+ + PK KL F I+ + + L HF +F+
Sbjct: 49 LVIGVKDKKISRVIKPMKQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ +T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITAITIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>gi|383482519|ref|YP_005391433.1| 50S ribosomal protein L3 [Rickettsia montanensis str. OSU 85-930]
gi|378934873|gb|AFC73374.1| 50S ribosomal protein L3 [Rickettsia montanensis str. OSU 85-930]
Length = 215
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + + + HF +F+
Sbjct: 49 LVIGVKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEENFIDIAASIEVDHFTAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>gi|422293341|gb|EKU20641.1| large subunit ribosomal protein L3 [Nannochloropsis gaditana
CCMP526]
Length = 247
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 204 PKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATH 263
PK+KL F +TPDA++ PGTP+ A HF P + +DV G + +GFQGVMKRW FKG A+H
Sbjct: 70 PKRKLWEFRVTPDALMAPGTPVLAQHFVPGQLVDVVGTSKGKGFQGVMKRWNFKGQGASH 129
Query: 264 GVTKSHRRGGCIASGAGKARVYPG 287
G + SHR G RV+ G
Sbjct: 130 GASLSHRSLGSTGQNTSPGRVFKG 153
>gi|383501400|ref|YP_005414759.1| 50S ribosomal protein L3 [Rickettsia australis str. Cutlack]
gi|378932411|gb|AFC70916.1| 50S ribosomal protein L3 [Rickettsia australis str. Cutlack]
Length = 215
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + + L HF +F+
Sbjct: 49 LVIGIKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEENFIDIAANLEVDHFMAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>gi|340372276|ref|XP_003384670.1| PREDICTED: 50S ribosomal protein L3-like [Amphimedon queenslandica]
Length = 198
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 62/93 (66%)
Query: 195 GLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRW 254
G F +GV PKK L F +T DA+L GT L+A+HF + +DV G+T +GFQGVMKR
Sbjct: 18 GHFTKAGVAPKKVLQEFRVTKDALLTVGTKLSASHFIAGQHVDVSGITKGKGFQGVMKRH 77
Query: 255 GFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G KG P++HGV+K+HR+ G G R++PG
Sbjct: 78 GMKGQPSSHGVSKTHRKMGATGGGGDPGRIWPG 110
>gi|430003420|emb|CCF19207.1| 50S ribosomal subunit protein L3 [Rhizobium sp.]
Length = 213
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ +R + K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHIPVTVLRLENCQVV-------------AHRTKEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + TK G F + V PK KL F ++ D M+ GT L A+HF + +
Sbjct: 49 VQLGAGTAKVKNTTKALRGHFAVAEVEPKSKLVEFRVSEDNMIDVGTELKASHFEAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ ATHGV+ SHR G S RV+ G
Sbjct: 109 DVTGTSIGKGFAGAMKRHNFGGLRATHGVSVSHRSHGSTGSNQDPGRVWKG 159
>gi|393771118|ref|ZP_10359593.1| 50S ribosomal protein L3 [Novosphingobium sp. Rr 2-17]
gi|392723482|gb|EIZ80872.1| 50S ribosomal protein L3 [Novosphingobium sp. Rr 2-17]
Length = 251
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 22/177 (12%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++ + D ++ I EE G
Sbjct: 2 RTGVIAKKVGMTRLFQEDGRHVPVTVLALEDCQVVS-IRTEELD--------------GY 46
Query: 177 LLVGAESGDPSL--YTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
+ V SG+ K F + VP K ++ F + DA+L G+ + A+HF P +
Sbjct: 47 VAVQLGSGEAKQKNVAKPQREHFAKAQVPLKMRVAEFRVADDAVLEVGSTIAASHFVPGQ 106
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQ 291
+DV G T +GFQG MKRWGF GM ATHGV+ SHR A G+ R PG V +
Sbjct: 107 LVDVAGHTQGKGFQGAMKRWGFGGMRATHGVSISHR-----AHGSTGQRQDPGKVFK 158
>gi|344304314|gb|EGW34563.1| hypothetical protein SPAPADRAFT_59991 [Spathaspora passalidarum
NRRL Y-27907]
Length = 279
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 94/197 (47%), Gaps = 24/197 (12%)
Query: 99 TPLKIEPLQ---PLEITTSSK----RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHII 151
T +K +P Q +E+ K R GL G G + NG + T++++ +I
Sbjct: 37 TSMKTQPNQVNHSVELGNRRKCLLDRPGLFGIKRGMITWFNDNGRQFPATVIEIDSVEVI 96
Query: 152 KYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRF 211
K+ +EF ++VGA L LF+ +GV PK KL F
Sbjct: 97 KHKTEQEFGYT-------------SVMVGAVD---KLKNVNNLKLFEQAGVSPKHKLGEF 140
Query: 212 II-TPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
+ + ++P G L A F + +D++G+T +GF GVMKR GFKG+ ATHGV+K+HR
Sbjct: 141 RVRSETGLVPVGAELKADMFAVGQMVDIKGITKGKGFAGVMKRHGFKGLAATHGVSKAHR 200
Query: 271 RGGCIASGAGKARVYPG 287
+ G RV PG
Sbjct: 201 KQGATGGNQDPGRVLPG 217
>gi|114704484|ref|ZP_01437392.1| 50S ribosomal protein L3 [Fulvimarina pelagi HTCC2506]
gi|114539269|gb|EAU42389.1| 50S ribosomal protein L3 [Fulvimarina pelagi HTCC2506]
Length = 241
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T+++V + ++ R + K
Sbjct: 2 RSGVIAQKVGMTRIYTDAGEHVPVTVLKVENLQVV-------------GQRTQDKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ VGA +K G+F + V PK+KL F +T D M+ G +TA HF + +
Sbjct: 49 VQVGAGLAKVKNTSKAMRGVFAQAKVEPKRKLVEFRVTEDNMIDIGAEITADHFVEGQMV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F GM ATHGV+ SHR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGAMKRHNFGGMRATHGVSISHRAHGSTGQNQDPGKVFKG 159
>gi|331214855|ref|XP_003320108.1| hypothetical protein PGTG_01020 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309299098|gb|EFP75689.1| hypothetical protein PGTG_01020 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 367
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 13/173 (7%)
Query: 116 KRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLG 175
+RTG++ + G W +G + T++++ D ++ + E R Y ++G
Sbjct: 95 RRTGVLARKRGMTSFWDSDGIRIPVTVLELEDVQVVGHKYKE-----RDNYDAI---QIG 146
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPP-GTPLTAAHFRPRE 234
C + + + K Y K+ + PK+K+ F+++ P GT ++AAHF P +
Sbjct: 147 CTDKFSRNSIHNAQLKYY----KHLDLTPKQKVTEFVVSNHQCFSPIGTSISAAHFVPGQ 202
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F+DV+ + +GF GVMKRWGF G A+HG TK HR+ G RV+PG
Sbjct: 203 FVDVKSNSKGKGFAGVMKRWGFSGGNASHGSTKHHRKAGSTGQHQDPGRVWPG 255
>gi|170748636|ref|YP_001754896.1| 50S ribosomal protein L3 [Methylobacterium radiotolerans JCM 2831]
gi|226730535|sp|B1LWS6.1|RL3_METRJ RecName: Full=50S ribosomal protein L3
gi|170655158|gb|ACB24213.1| ribosomal protein L3 [Methylobacterium radiotolerans JCM 2831]
Length = 241
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 78/158 (49%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ ++ +R K
Sbjct: 2 RSGVIAQKVGMTRVFTDAGEHVPVTVLKIDQCQVV-------------AHRTVEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L VG + G F + V PKKKL F +T DA++P G +TA HF P +F+
Sbjct: 49 LQVGVGKAKVKNVSAAERGRFAVAKVEPKKKLAEFRVTEDALIPVGAEITADHFIPGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G T +GF G +KRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTTTGKGFAGGIKRWNFGGLRATHGVSISHRSIGS 146
>gi|149203511|ref|ZP_01880481.1| 50S ribosomal protein L3 [Roseovarius sp. TM1035]
gi|149143344|gb|EDM31383.1| 50S ribosomal protein L3 [Roseovarius sp. TM1035]
Length = 280
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 87/171 (50%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L++++G++ T++Q+ ++ PE K
Sbjct: 3 RSGVIAKKVGMTRLFLEDGKQVPVTVLQLDKLQVVAQRTPE-------------KDGYTA 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + T+ G F + V PK+K+ F + P+A++ G +TA H+ +F+
Sbjct: 50 VQLGAGTAKAKRTTQAMRGHFAAAKVEPKRKIAEFRVAPEALINVGEEITADHYFEGQFV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 110 DVSGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 160
>gi|224005591|ref|XP_002291756.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972275|gb|EED90607.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 232
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 86/176 (48%), Gaps = 9/176 (5%)
Query: 112 TTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPK 171
T KR G +G +G PLW K GE+ T++ + +N +++ + G +
Sbjct: 15 TLRDKRCGALGIKLGMMPLWDKWGERHPCTVLYLDNNVVVRTKSKDSVDGYDAVQIGAGE 74
Query: 172 RKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFR 231
RK P + G+ +N PP + TPDAM PPG+ + A HF
Sbjct: 75 RKA------KNVNKPLMCHYAKFGVNEN---PPYVVREFRVTTPDAMPPPGSKIHARHFV 125
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
P + +D+ G + +GFQG MKR GFKGMPATHG +KSHR G RV+ G
Sbjct: 126 PGQNVDIAGTSKGKGFQGGMKRHGFKGMPATHGTSKSHRAIGSTGQCQDPGRVFKG 181
>gi|378825667|ref|YP_005188399.1| 50S ribosomal protein L3 [Sinorhizobium fredii HH103]
gi|365178719|emb|CCE95574.1| 50S ribosomal protein L3 [Sinorhizobium fredii HH103]
Length = 228
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ R E K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHIPVTVLRLENCQVV-------------AQRTEEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA TK G F + V PK KL F +T D ++ G LTA+HF + +
Sbjct: 49 VQLGAGRSKVKNTTKALRGHFAAASVEPKAKLVEFRVTADNLIDIGAELTASHFVAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GF G +KR F G+ ATHGV+ SHR G S RV+ G
Sbjct: 109 DVTGTTIGKGFAGAIKRHNFGGLRATHGVSVSHRSHGSTGSNQDPGRVWKG 159
>gi|334345467|ref|YP_004554019.1| 50S ribosomal protein L3 [Sphingobium chlorophenolicum L-1]
gi|334102089|gb|AEG49513.1| 50S ribosomal protein L3 [Sphingobium chlorophenolicum L-1]
Length = 251
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 79/169 (46%), Gaps = 13/169 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++ + N ++ E R Y
Sbjct: 2 RTGVIAKKVGMTRLFQEDGRHIPVTVLALEGNQVVARKEVE-----RDGYV--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA K G F + V PK +L F + DA+L G + A HF + +
Sbjct: 49 VQLGAGVAKVKNVAKPQRGHFAKAEVEPKARLVEFRVAEDALLDVGAEIAADHFIAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
DV G T +GF G MKRWGF GM ATHGV+ SHR G + RV+
Sbjct: 109 DVAGHTQGKGFAGAMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVF 157
>gi|399991377|ref|YP_006571617.1| 50S ribosomal protein L3 [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
gi|400755779|ref|YP_006564147.1| 50S ribosomal protein L3 [Phaeobacter gallaeciensis 2.10]
gi|398654932|gb|AFO88902.1| 50S ribosomal protein L3 [Phaeobacter gallaeciensis 2.10]
gi|398655932|gb|AFO89898.1| 50S ribosomal protein L3 [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
Length = 237
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L++++G++ T++Q+ + R E K
Sbjct: 2 RSGIIAKKVGMTRLFLEDGKQVPVTVLQLDGLQVT-------------AQRTEEKDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA S +K G F + V PK+KL F + DA++ G ++A HF + +
Sbjct: 49 VQLGAGSAKVKRVSKAMRGHFAAAKVEPKRKLVEFRVPADALIEVGAEISAEHFLEGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKRW F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGAMKRWNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 159
>gi|94498476|ref|ZP_01305032.1| ribosomal protein L3 [Sphingomonas sp. SKA58]
gi|94422019|gb|EAT07064.1| ribosomal protein L3 [Sphingomonas sp. SKA58]
Length = 252
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++ + N ++ + +R Y
Sbjct: 3 RTGVIAKKVGMTRLFQEDGRHVPVTVLALEGNQVVA-----RKETDRDGYI--------A 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA K G F + V PK +L F + DA+L G + A HF + +
Sbjct: 50 VQLGAGVAKVKNVAKPQRGQFAKAEVEPKARLVEFRVAEDALLDVGAEIAADHFVAGQLV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
DV G T +GF G MKRWGF GM ATHGV+ SHR G + RV+
Sbjct: 110 DVAGHTQGKGFAGAMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVF 158
>gi|312115687|ref|YP_004013283.1| 50S ribosomal protein L3 [Rhodomicrobium vannielii ATCC 17100]
gi|311220816|gb|ADP72184.1| 50S ribosomal protein L3 [Rhodomicrobium vannielii ATCC 17100]
Length = 236
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 13/161 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+GL+ + +G ++ + GE T++++ +I +R +
Sbjct: 2 RSGLLAQKVGMTRIFTEAGEHVPVTVLKLDQCQVI-------------AHRTQEANGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ VGA S T+ G F + V PK K+ F +TP+ ++ G LTA HF +F+
Sbjct: 49 IQVGAGSRKVKNVTRAERGHFAKAQVEPKAKVVEFRVTPENVIEVGAELTADHFLAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
DV G ++ +GF G MKRW F G+ ATHGV+ SHR G +
Sbjct: 109 DVIGTSIGKGFAGAMKRWNFGGLRATHGVSISHRSHGSTGN 149
>gi|114570345|ref|YP_757025.1| 50S ribosomal protein L3P [Maricaulis maris MCS10]
gi|122315784|sp|Q0ANQ0.1|RL3_MARMM RecName: Full=50S ribosomal protein L3
gi|114340807|gb|ABI66087.1| LSU ribosomal protein L3P [Maricaulis maris MCS10]
Length = 268
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 13/173 (7%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
+RTG++ + +G ++ ++G T++ + + ++ + +R Y
Sbjct: 5 DRRTGVVARKLGMTRIFAEDGSHVPCTVLHMDNVQVVSHKTA-----DRDGYV------- 52
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
L +GA K G F + V PK+KL F + DA++ G+ LTA HF P +
Sbjct: 53 -ALQLGAGEAKAKRTPKAMRGHFAKAKVAPKRKLVEFRVAEDALIEVGSELTADHFVPGQ 111
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G+++ +GF G MKR GF G+ ATHGV+ SHR G +V+ G
Sbjct: 112 KVDVAGISIGKGFAGAMKRHGFGGLRATHGVSISHRSHGSTGQCQDPGKVFKG 164
>gi|357032626|ref|ZP_09094561.1| 50S ribosomal protein L3 [Gluconobacter morbifer G707]
gi|356413617|gb|EHH67269.1| 50S ribosomal protein L3 [Gluconobacter morbifer G707]
Length = 227
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTGLI K +G L+ ++G T++ + D ++ E R Y
Sbjct: 2 RTGLIAKKLGMSRLFKEDGTHVPVTVLHLDDVEVVDARTNE-----RDGYT--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G TK G F + V PKK+L F + DA+L GT L+A+HF + +
Sbjct: 49 VQLGLGKAKVKNVTKANRGHFARAKVEPKKRLVEFRVADDALLEAGTKLSASHFLVGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G + +GF GVMKR F G+ ATHGV+ SHR G +V+ G
Sbjct: 109 DVTGQSKGKGFAGVMKRHNFAGLEATHGVSISHRSHGSTGQRQDPGKVFKG 159
>gi|401839024|gb|EJT42402.1| MRPL9-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 269
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 99/203 (48%), Gaps = 15/203 (7%)
Query: 87 APAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKN-GEKCRTTLVQV 145
AP++ + I+T P+ P KR GLI + G P + K+ GE+ T+++V
Sbjct: 28 APSIANSIKTEAPPINRSPEVANARKWLPKRCGLITRKKGMMPYFDKSTGERTAATILEV 87
Query: 146 VDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPK 205
+ +I + PE C VG S S +++ G F + V PK
Sbjct: 88 NNVEVIMHRTPE------------ANGYFACQ-VGYGSKHLSKVSRQMLGHFSSKVVNPK 134
Query: 206 KKLCRFIITPD-AMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHG 264
+ + F + + +L PGT L + F+ +++D+R ++ +GF GVMKR+GFKG+ A+HG
Sbjct: 135 EYVAEFRVENEKGLLSPGTLLKPSFFKEGQYVDIRSVSKGKGFTGVMKRYGFKGLRASHG 194
Query: 265 VTKSHRRGGCIASGAGKARVYPG 287
+ HR GG RV PG
Sbjct: 195 TSIMHRHGGSYGQNQDPGRVLPG 217
>gi|291001533|ref|XP_002683333.1| 50S ribosomal protein L3 [Naegleria gruberi]
gi|284096962|gb|EFC50589.1| 50S ribosomal protein L3 [Naegleria gruberi]
Length = 449
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 15/173 (8%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
S RTG+I + +G P W + T++ + +++ + + K
Sbjct: 141 SVRTGVIAQKLGMIPFWDSYHARVPLTVLHIPKCQVVQV-------------KTKEKDGY 187
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
L +GA S TK G + +GV PK +T DA+LP G +TA HF P +
Sbjct: 188 TALQLGAGSMSAKKLTKPLLGHCQKAGVEPKHVYTEAKVTEDAILPVGFEITARHFIPGQ 247
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F+D+ G + + F G MKRWGF G PATHGV+ HR G ++G +V+ G
Sbjct: 248 FIDISGRSKGKRFAGPMKRWGFAGQPATHGVSVVHRSLG--STGTMINKVFKG 298
>gi|103488295|ref|YP_617856.1| 50S ribosomal protein L3 [Sphingopyxis alaskensis RB2256]
gi|123078063|sp|Q1GP99.1|RL3_SPHAL RecName: Full=50S ribosomal protein L3
gi|98978372|gb|ABF54523.1| LSU ribosomal protein L3P [Sphingopyxis alaskensis RB2256]
Length = 257
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ +G T++ + ++ E R Y
Sbjct: 2 RTGVIAKKMGMTRLFQDDGRHVPVTVLSLEGCQVVSVRDKE-----RDGYV--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + K G + + V PK KL F + DA L G L+A HF + +
Sbjct: 49 VQLGAGTAKAKNVAKPQRGAYGKAEVEPKAKLVEFRVADDATLDVGAELSADHFVAGQMV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
D++G+T +GF G MKRWGF GM ATHGV+ SHR G + RV+
Sbjct: 109 DIQGVTQGKGFAGAMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVF 157
>gi|99080087|ref|YP_612241.1| 50S ribosomal protein L3 [Ruegeria sp. TM1040]
gi|123077810|sp|Q1GK37.1|RL3_SILST RecName: Full=50S ribosomal protein L3
gi|99036367|gb|ABF62979.1| LSU ribosomal protein L3P [Ruegeria sp. TM1040]
Length = 239
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++ + ++ R E K
Sbjct: 2 RSGIIAKKVGMTRLFMEDGKQIPVTVLSLDGLQVV-------------AQRTEDKDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA S +K G F S V PK+KL F + D ++ G ++A HF + +
Sbjct: 49 VQLGAGSAKVKRVSKAMRGHFAASKVEPKRKLVEFRVPADGLIEVGAEISAEHFLEGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKRW F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGAMKRWNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 159
>gi|393770433|ref|ZP_10358929.1| 50S ribosomal protein L3 [Methylobacterium sp. GXF4]
gi|392724113|gb|EIZ81482.1| 50S ribosomal protein L3 [Methylobacterium sp. GXF4]
Length = 241
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ ++ +R K
Sbjct: 2 RSGVIAQKVGMTRVFTDAGEHVPVTVLKIDQCQVV-------------AHRTVEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L VG + G F + V PKKKL F ++ DA++P G +TA HF P +F+
Sbjct: 49 LQVGVGKAKVKNVSAAERGRFAIAKVEPKKKLAEFRVSEDALIPVGAEITADHFIPGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G T +GF G +KRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTTTGKGFAGGIKRWNFGGLRATHGVSISHRSIGS 146
>gi|323456985|gb|EGB12851.1| hypothetical protein AURANDRAFT_19295, partial [Aureococcus
anophagefferens]
Length = 249
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 81/180 (45%), Gaps = 21/180 (11%)
Query: 116 KRTGLIGKIIGQYPLWMKNGEKCRTTL--------VQVVDNHIIKYIPPEEFKPNRKPYR 167
+RTG + +G W +G++ T+ VQV D Y + KP
Sbjct: 1 RRTGALAVKVGMLGTWDASGQRHALTVLHVDGCRVVQVKDAATDGYTALQLGAGALKPKH 60
Query: 168 GEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTA 227
C G E+ + Y + L F ++ DA+LPPGT + A
Sbjct: 61 APSAHAGHCGAHGGEAVAGTPYELA-------------RTLAEFRVSADAVLPPGTRVPA 107
Query: 228 AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
AHF P + +DVRG T +GFQG MKRW F G ATHGV+K+HR G + RV+ G
Sbjct: 108 AHFAPGQLVDVRGATRGKGFQGAMKRWNFGGQRATHGVSKTHRAHGSMGGCQNPGRVFKG 167
>gi|294010613|ref|YP_003544073.1| 50S ribosomal protein L3 [Sphingobium japonicum UT26S]
gi|390168173|ref|ZP_10220139.1| 50S ribosomal protein L3 [Sphingobium indicum B90A]
gi|292673943|dbj|BAI95461.1| ribosomal protein L3 [Sphingobium japonicum UT26S]
gi|389589239|gb|EIM67268.1| 50S ribosomal protein L3 [Sphingobium indicum B90A]
Length = 251
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 79/169 (46%), Gaps = 13/169 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++ + N ++ E R Y
Sbjct: 2 RTGVIAKKVGMTRLFQEDGRHIPVTVLALEGNQVVARKEVE-----RDGYV--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA K G F + V PK +L F + DA+L G + A HF + +
Sbjct: 49 VQLGAGVAKVKNVAKPQRGHFAKAEVEPKARLVEFRVAEDALLDVGAEIAADHFIAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
DV G T +GF G MKRWGF GM ATHGV+ SHR G + RV+
Sbjct: 109 DVAGHTQGKGFAGAMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVF 157
>gi|427408974|ref|ZP_18899176.1| 50S ribosomal protein L3 [Sphingobium yanoikuyae ATCC 51230]
gi|425713284|gb|EKU76298.1| 50S ribosomal protein L3 [Sphingobium yanoikuyae ATCC 51230]
Length = 250
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 77/169 (45%), Gaps = 13/169 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ +G T++ + ++ E R Y
Sbjct: 2 RTGVIAKKVGMTRLFQDDGRHVPVTVLSLEGTQVVARKEVE-----RDGYV--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +GA K G F + V PK +L F + DA+L G + A HF + +
Sbjct: 49 LQLGAGVAKAKNVAKPQRGHFAKAEVEPKARLVEFRVAEDALLDVGAEIAADHFVAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
DV G T +GF G MKRWGF GM ATHGV+ SHR G + RV+
Sbjct: 109 DVAGHTQGKGFAGAMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVF 157
>gi|259415840|ref|ZP_05739760.1| 50S ribosomal protein L3 [Silicibacter sp. TrichCH4B]
gi|259347279|gb|EEW59056.1| 50S ribosomal protein L3 [Silicibacter sp. TrichCH4B]
Length = 239
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++ + ++ R E K
Sbjct: 2 RSGIIAKKVGMTRLFMEDGKQIPVTVLSLDGLQVV-------------AQRTEDKDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA S +K G F S V PK+KL F + D ++ G ++A HF + +
Sbjct: 49 VQLGAGSAKVKRVSKAMRGHFAASKVEPKRKLVEFRVPADGLIEVGAEISAEHFLTGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKRW F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGAMKRWNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 159
>gi|418937872|ref|ZP_13491459.1| 50S ribosomal protein L3 [Rhizobium sp. PDO1-076]
gi|375055421|gb|EHS51682.1| 50S ribosomal protein L3 [Rhizobium sp. PDO1-076]
Length = 212
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ DN ++ + + N
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHIPVTVLRM-DN--VQVVAQRTVEKNGYV----------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +GA + +K G F + V PK KL F ++ D M+ G LTA HF + +
Sbjct: 49 LQLGAGNSKVKNTSKGLRGHFAAASVEPKAKLVEFRVSEDNMIDVGAQLTAGHFEAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GF G MKR F G+ ATHGV+ SHR G S RV+ G
Sbjct: 109 DVTGTTIGKGFAGAMKRHNFGGLRATHGVSVSHRSHGSTGSNQDPGRVWKG 159
>gi|409402006|ref|ZP_11251632.1| 50S ribosomal protein L3 [Acidocella sp. MX-AZ02]
gi|409129324|gb|EKM99182.1| 50S ribosomal protein L3 [Acidocella sp. MX-AZ02]
Length = 224
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 13/161 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++ + + ++ E G +LG
Sbjct: 2 RTGVIAKKLGMTRLFKEDGTHVPVTVLHLDEVRVVAARNVEN--------DGYSAVQLGI 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
A++ +K G F + V P +KL F + DA L PG L+AAHF +F+
Sbjct: 54 GKAKAKN-----VSKAQKGHFAKAKVEPAQKLVEFRVADDAALEPGAVLSAAHFTVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
DV G+T +GF G MKRW F+G+ A+HGV+ SHR G +
Sbjct: 109 DVAGITKGKGFAGGMKRWNFRGLEASHGVSISHRSLGSTGN 149
>gi|384261632|ref|YP_005416818.1| 50S ribosomal protein L3 [Rhodospirillum photometricum DSM 122]
gi|378402732|emb|CCG07848.1| 50S ribosomal protein L3 [Rhodospirillum photometricum DSM 122]
Length = 241
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+GLI + +G L+ + G T+++V ++ R E
Sbjct: 2 RSGLIAQKVGMTRLFNEEGAHVPVTVLKVESCQVV-------------AVRTETTDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA +K G + + V PK+K+ F ++ D +L PG L+AAHF + +
Sbjct: 49 VQLGAGVAKVKRTSKALRGHYAKAKVEPKRKVVEFRVSEDCLLEPGAELSAAHFIAGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G+T+ RGF G MKR F+G+ A+HGV+ SHR G RV+ G
Sbjct: 109 DVAGITIGRGFAGAMKRHNFRGLEASHGVSVSHRSHGSTGQCQDPGRVFKG 159
>gi|67458670|ref|YP_246294.1| 50S ribosomal protein L3 [Rickettsia felis URRWXCal2]
gi|75536865|sp|Q4UMS9.1|RL3_RICFE RecName: Full=50S ribosomal protein L3
gi|67004203|gb|AAY61129.1| 50S ribosomal protein L3 [Rickettsia felis URRWXCal2]
Length = 215
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + + L +F +F+
Sbjct: 49 LVIGIKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEENFIDIAASLEVDYFTAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>gi|85703987|ref|ZP_01035090.1| 50S ribosomal protein L3 [Roseovarius sp. 217]
gi|85671307|gb|EAQ26165.1| 50S ribosomal protein L3 [Roseovarius sp. 217]
Length = 280
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L++++G++ T++Q+ ++ PE K
Sbjct: 3 RSGVIAKKVGMTRLFLEDGKQVPVTVLQLDKLQVVAQRTPE-------------KDGYTA 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + T+ G F + V PK+K+ F + P+ M+ G +TA H+ +F+
Sbjct: 50 VQLGAGTAKAKRTTQAMRGHFAAAKVEPKRKIAEFRVAPENMINVGEEITADHYFEGQFV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 110 DVSGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 160
>gi|398353243|ref|YP_006398707.1| 50S ribosomal protein L3 [Sinorhizobium fredii USDA 257]
gi|390128569|gb|AFL51950.1| 50S ribosomal protein L3 [Sinorhizobium fredii USDA 257]
Length = 257
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ +R E K
Sbjct: 31 RSGVIAQKVGMTRVYNDAGEHIPVTVLRLENCQVV-------------AHRTEEKNGYTA 77
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA TK G F + V PK KL F ++ D ++ G LTA HF + +
Sbjct: 78 VQLGAGRSKVKNTTKALRGHFAAASVEPKAKLVEFRVSADNLIDIGAELTAGHFVAGQLV 137
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GF G +KR F G+ ATHGV+ SHR G S RV+ G
Sbjct: 138 DVTGTTIGKGFAGAIKRHNFGGLRATHGVSVSHRSHGSTGSNQDPGRVWKG 188
>gi|414162147|ref|ZP_11418394.1| 50S ribosomal protein L3 [Afipia felis ATCC 53690]
gi|410879927|gb|EKS27767.1| 50S ribosomal protein L3 [Afipia felis ATCC 53690]
Length = 243
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 13/154 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ +R + K
Sbjct: 2 RSGVIAQKVGMTRVFTEAGEHIPVTVLKLGNCQVV-------------GHRTKDKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G+ + K G F + V PK+K+ F ++ DAM+P G +TA HF +F+
Sbjct: 49 LQLGSGARKSVYMPKAERGQFAVAKVEPKRKVVEFRVSDDAMIPVGAEITADHFVAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 109 DVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHR 142
>gi|354593426|ref|ZP_09011469.1| 50S ribosomal protein L3 [Commensalibacter intestini A911]
gi|353672537|gb|EHD14233.1| 50S ribosomal protein L3 [Commensalibacter intestini A911]
Length = 229
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 23/163 (14%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTL-----VQVVDNHIIKYIPPEEFKPNRKPYRGEPK 171
RTGLI K +G L+ ++G T+ VQVVD R + +
Sbjct: 2 RTGLIAKKLGMTRLFKEDGTHVPVTVLHLDEVQVVDT------------------RTQDR 43
Query: 172 RKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFR 231
+ +G ++ G F V PK+KL F ++ DA+L G+ LTAAHF
Sbjct: 44 DGYTAVQLGIGKAKVKNVSQPNRGHFARVKVEPKQKLVEFRVSEDALLESGSALTAAHFV 103
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
+ +DV G + +GF G MKRW F+G+ ATHGV+ SHR G
Sbjct: 104 VGQKVDVTGTSKGKGFAGAMKRWNFRGLEATHGVSVSHRSHGS 146
>gi|260577181|ref|ZP_05845158.1| ribosomal protein L3 [Rhodobacter sp. SW2]
gi|259020655|gb|EEW23974.1| ribosomal protein L3 [Rhodobacter sp. SW2]
Length = 241
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 87/171 (50%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L++++G++ T++Q+ ++ E R Y
Sbjct: 2 RSGVIAKKLGMTRLFLEDGKQVPVTVLQLDALQVVAQRTAE-----RDGYT--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + T G F + V PK+K+ F ++PD ++ G +TA H+ +F+
Sbjct: 49 VQLGAGAAKAKRTTAGMRGHFAAANVAPKRKIAEFRVSPDNLIDVGAEITADHYLAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D+ G ++ +GFQG MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DIAGTSIGKGFQGAMKRHNFGGLRASHGVSVSHRSHGSTGQCQDPGKVFKG 159
>gi|330993846|ref|ZP_08317778.1| 50S ribosomal protein L3 [Gluconacetobacter sp. SXCC-1]
gi|329759114|gb|EGG75626.1| 50S ribosomal protein L3 [Gluconacetobacter sp. SXCC-1]
Length = 223
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 82/172 (47%), Gaps = 18/172 (10%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
+I K +G L+ ++G T++QV D ++ E R Y + +
Sbjct: 1 MIAKKLGMTRLFKEDGTHVPVTVLQVDDLQVVDVRTTE-----RDGYT--------AVQL 47
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
GA +K G F + V PKKKL F + D++L G L+AAHF + +DV
Sbjct: 48 GAGKAKVKNVSKPNRGHFAKAKVEPKKKLAEFRVADDSVLEVGASLSAAHFVAGQKVDVT 107
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQ 291
G + +GF G MKRW F G+ ATHGV+ SHR G + R PG V +
Sbjct: 108 GTSKGKGFAGAMKRWNFAGLEATHGVSISHRSHGSTGN-----RQDPGKVFK 154
>gi|51473839|ref|YP_067596.1| 50S ribosomal protein L3 [Rickettsia typhi str. Wilmington]
gi|383752615|ref|YP_005427715.1| 50S ribosomal protein L3 [Rickettsia typhi str. TH1527]
gi|383843451|ref|YP_005423954.1| 50S ribosomal protein L3 [Rickettsia typhi str. B9991CWPP]
gi|81826293|sp|Q68W78.1|RL3_RICTY RecName: Full=50S ribosomal protein L3
gi|51460151|gb|AAU04114.1| 50S ribosomal protein L3 [Rickettsia typhi str. Wilmington]
gi|380759258|gb|AFE54493.1| 50S ribosomal protein L3 [Rickettsia typhi str. TH1527]
gi|380760098|gb|AFE55332.1| 50S ribosomal protein L3 [Rickettsia typhi str. B9991CWPP]
Length = 215
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V ++ ++ K
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDGCQVV-------------GHKTLAKHGYNA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ D + + L HF +F+
Sbjct: 49 LVIGVKDQKISRVTKPMKQVFANAKISPKTKLKEFRISEDNFIDIASILEVDHFSVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>gi|428161708|gb|EKX30998.1| hypothetical protein GUITHDRAFT_91284, partial [Guillardia theta
CCMP2712]
Length = 231
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 76/155 (49%), Gaps = 13/155 (8%)
Query: 131 WMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYT 190
W N TL+ + DN +I+ P+ + Y G L +GA +
Sbjct: 5 WDDNSVGHPLTLIHIPDNQVIQVKTPQN-----EGYTG--------LQIGAVNQLAKRMP 51
Query: 191 KEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGV 250
K F+ V PKKK+ F +T DA+L GT LTA+H +++D+ G ++ +GFQG
Sbjct: 52 KSLLLHFQKHSVVPKKKVHEFRVTEDALLETGTCLTASHLVAGQYVDITGKSIGKGFQGA 111
Query: 251 MKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
MKRWGF G A+HG ++SHR G R +
Sbjct: 112 MKRWGFGGQGASHGASRSHRSLGSTGHRKSPGRTF 146
>gi|398383734|ref|ZP_10541797.1| 50S ribosomal protein L3, bacterial [Sphingobium sp. AP49]
gi|397724179|gb|EJK84654.1| 50S ribosomal protein L3, bacterial [Sphingobium sp. AP49]
Length = 251
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 13/169 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ +G T++ + N ++ + +R Y
Sbjct: 2 RTGVIAKKVGMTRLFQDDGRHVPVTVLALEGNQVV-----ARKETDRDGYI--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA K G F + V PK +L F + DA+L G + A HF + +
Sbjct: 49 VQLGAGVAKAKNVAKPQRGHFGKAEVEPKARLVEFRVAEDALLDVGAEIAADHFIAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
DV G T +GF G MKRWGF GM ATHGV+ SHR G + RV+
Sbjct: 109 DVAGHTQGKGFAGAMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVF 157
>gi|227821756|ref|YP_002825726.1| 50S ribosomal protein L3 [Sinorhizobium fredii NGR234]
gi|227340755|gb|ACP24973.1| 50S ribosomal protein L3 [Sinorhizobium fredii NGR234]
Length = 257
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ R E K
Sbjct: 31 RSGVIAQKVGMTRVYNDAGEHIPVTVLRLENCQVV-------------AQRTEEKNGYTA 77
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA TK G F + V PK K+ F +T D ++ G LTA+HF + +
Sbjct: 78 VQLGAGRSKVKNTTKALRGHFAAASVEPKAKVVEFRVTADNLIDIGAELTASHFVAGQLV 137
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GF G +KR F G+ ATHGV+ SHR G S RV+ G
Sbjct: 138 DVTGTTIGKGFAGAIKRHNFGGLRATHGVSVSHRSHGSTGSNQDPGRVWKG 188
>gi|83854978|ref|ZP_00948508.1| 50S ribosomal protein L3 [Sulfitobacter sp. NAS-14.1]
gi|83842821|gb|EAP81988.1| 50S ribosomal protein L3 [Sulfitobacter sp. NAS-14.1]
Length = 280
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++Q+ ++ PE K
Sbjct: 3 RSGVIAKKMGMTRLFMEDGKQIPVTVLQLDKLQVVAQRTPE-------------KDGYTA 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + ++ G F + V PK+K+ F + P+AML G + A H+ +++
Sbjct: 50 VQLGAGTAKAKRTSQAMRGHFAAAKVEPKRKVAEFRVDPEAMLNVGEEIIADHYFAGQYV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ ATHGV+ SHR G +V+ G
Sbjct: 110 DVAGTSIGKGFAGAMKRHNFGGLRATHGVSISHRSHGSTGQCQDPGKVFKG 160
>gi|83941500|ref|ZP_00953962.1| 50S ribosomal protein L3 [Sulfitobacter sp. EE-36]
gi|83847320|gb|EAP85195.1| 50S ribosomal protein L3 [Sulfitobacter sp. EE-36]
Length = 280
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++Q+ ++ PE K
Sbjct: 3 RSGVIAKKMGMTRLFMEDGKQIPVTVLQLDKLQVVAQRTPE-------------KDGYTA 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + ++ G F + V PK+K+ F + P+AML G + A H+ +++
Sbjct: 50 VQLGAGTAKAKRTSQAMRGHFAAAKVEPKRKVAEFRVDPEAMLNVGEEIIADHYFAGQYV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ ATHGV+ SHR G +V+ G
Sbjct: 110 DVAGTSIGKGFAGAMKRHNFGGLRATHGVSISHRSHGSTGQCQDPGKVFKG 160
>gi|84503642|ref|ZP_01001680.1| 50S ribosomal protein L3 [Oceanicola batsensis HTCC2597]
gi|84387939|gb|EAQ00991.1| 50S ribosomal protein L3 [Oceanicola batsensis HTCC2597]
Length = 290
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K IG L+M++G++ T++Q+ ++ R
Sbjct: 3 RSGIIAKKIGMTRLFMEDGKQVPVTVLQLDKLQVV-------------AQRTAEAHGYTA 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + +K G F + V PK+K+ F + PD ++ G +TA H+ +F+
Sbjct: 50 VQLGAGTAKAKRTSKAMRGHFAAASVEPKRKIAEFRVDPDNLIKVGEEITADHYFEGQFV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ ATHGV+ SHR G +V+ G
Sbjct: 110 DVCGTSIGKGFAGAMKRHNFGGLRATHGVSISHRSHGSTGQCQDPGKVFKG 160
>gi|294786411|ref|ZP_06751665.1| 50S ribosomal protein L3 [Parascardovia denticolens F0305]
gi|315225973|ref|ZP_07867761.1| 50S ribosomal protein L3 [Parascardovia denticolens DSM 10105 = JCM
12538]
gi|420236622|ref|ZP_14741104.1| 50S ribosomal protein L3 [Parascardovia denticolens IPLA 20019]
gi|294485244|gb|EFG32878.1| 50S ribosomal protein L3 [Parascardovia denticolens F0305]
gi|315120105|gb|EFT83237.1| 50S ribosomal protein L3 [Parascardovia denticolens DSM 10105 = JCM
12538]
gi|391880245|gb|EIT88740.1| 50S ribosomal protein L3 [Parascardovia denticolens IPLA 20019]
Length = 217
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
+T++ RT L+GK +G +W +NG TLV V N ++ + E+ R Y+
Sbjct: 1 MTSNINRTALVGKKLGMSQIWDENGFFVPVTLVDVSTN-VVTAVKSED----RDGYK--- 52
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
+ +G + DP+ TK G F +GV P++ L PG L A F
Sbjct: 53 -----AVQLGYGAIDPTKVTKPLAGHFAKAGVTPRRHLVEVRTEDAGSYQPGQELAADTF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +DV G T +GF G +KRWGFK THG K+ RR G I + A +RV G
Sbjct: 108 SDGDQVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSIGACATPSRVLKG 164
>gi|254569692|ref|XP_002491956.1| mitochondrial 54S ribosomal protein YmL9 [Komagataella pastoris
GS115]
gi|238031753|emb|CAY69676.1| Mitochondrial ribosomal protein of the large subunit [Komagataella
pastoris GS115]
gi|328351549|emb|CCA37948.1| 50S ribosomal protein L3 [Komagataella pastoris CBS 7435]
Length = 262
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Query: 190 TKEYCGLFKNSGVPPKKKLCRFII-TPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQ 248
TK+ G F + V PK+K+ F + + D +LP GT L A HF+ EF+D++ ++ +GF
Sbjct: 111 TKKMLGHFAKAQVSPKEKVVEFHVKSDDGLLPVGTLLKADHFKVGEFVDLQSISKGKGFA 170
Query: 249 GVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GVMKRW F G+ A+HGV+K+HR G R PG
Sbjct: 171 GVMKRWNFHGLKASHGVSKAHRSAGSTGGNQTPGRTLPG 209
>gi|189183951|ref|YP_001937736.1| 50S ribosomal protein L3 [Orientia tsutsugamushi str. Ikeda]
gi|189180722|dbj|BAG40502.1| 50S ribosomal protein L3 [Orientia tsutsugamushi str. Ikeda]
Length = 227
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 22/184 (11%)
Query: 106 LQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHII--KYIPPEEFKPNR 163
+ E + R+GLI + +G + +NG K TL++V ++ K + + +
Sbjct: 5 ISACEFKMKNARSGLIAEKLGMSSKFDENGRKVAITLLKVDVCQVLWHKLVSKDGYN--- 61
Query: 164 KPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGT 223
+++G ++ P K +F + + PK + F + D ML +
Sbjct: 62 ------------AVILGYKNISPFKVKKPMRSIFSRAKIEPKAVIKEFKVAEDRMLEIAS 109
Query: 224 PLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKAR 283
L A++FR +++DVRG+T+ +GF G MKR GF+G+ A+HGV+ SHR G + R
Sbjct: 110 ILDASYFRVGQYVDVRGITIGKGFAGAMKRHGFRGLEASHGVSISHRSHGSTGN-----R 164
Query: 284 VYPG 287
YPG
Sbjct: 165 AYPG 168
>gi|157826063|ref|YP_001493783.1| 50S ribosomal protein L3 [Rickettsia akari str. Hartford]
gi|166234584|sp|A8GPF0.1|RL3_RICAH RecName: Full=50S ribosomal protein L3
gi|157800021|gb|ABV75275.1| 50S ribosomal protein L3 [Rickettsia akari str. Hartford]
Length = 215
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERIPLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + L HF +F+
Sbjct: 49 LVIGIKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEGNFIDIAANLEVDHFMAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>gi|114327218|ref|YP_744375.1| 50S ribosomal protein L3 [Granulibacter bethesdensis CGDNIH1]
gi|122327802|sp|Q0BUQ0.1|RL3_GRABC RecName: Full=50S ribosomal protein L3
gi|114315392|gb|ABI61452.1| LSU ribosomal protein L3P [Granulibacter bethesdensis CGDNIH1]
Length = 231
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 78/166 (46%), Gaps = 23/166 (13%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTL-----VQVVDNHIIKYIPPEEFKPNRKPYRGEPK 171
RTGLI + +G L+ ++G T+ VQVVD R + +
Sbjct: 2 RTGLIARKLGMTRLFKEDGTHVPVTVLHLDQVQVVDT------------------RTKER 43
Query: 172 RKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFR 231
+ +G P +K G F V PKKKL F + DA+L PG L+A HF
Sbjct: 44 DGYTAVQLGFGQAKPKHVSKANKGHFARVKVEPKKKLVEFRVAEDAILEPGATLSAEHFL 103
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
+ +DV G + +GF G MKRW F G+ A+HGV+ SHR G +
Sbjct: 104 VGQKVDVTGTSKGKGFAGAMKRWNFAGLEASHGVSISHRSHGSTGN 149
>gi|90417763|ref|ZP_01225675.1| ribosomal protein L3 [Aurantimonas manganoxydans SI85-9A1]
gi|90337435|gb|EAS51086.1| ribosomal protein L3 [Aurantimonas manganoxydans SI85-9A1]
Length = 241
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T+++V + ++ R + K
Sbjct: 2 RSGVIAQKVGMTRVYNDVGEHVPVTVLKVENLQVV-------------AQRTKEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ VGA +K G+F + V PK+KL F ++ D M+ G +TA HF P + +
Sbjct: 49 VQVGAGLAKVKNTSKPMRGVFAQASVEPKRKLVEFRVSDDNMIDVGAEITAEHFVPGQMV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G ++ +GF G MKR F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTSIGKGFAGAMKRHNFGGLRATHGVSVSHRSHGS 146
>gi|326388197|ref|ZP_08209800.1| 50S ribosomal protein L3 [Novosphingobium nitrogenifigens DSM
19370]
gi|326207363|gb|EGD58177.1| 50S ribosomal protein L3 [Novosphingobium nitrogenifigens DSM
19370]
Length = 241
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++ + D ++ E R Y
Sbjct: 2 RTGVIAKKVGMTRLFQEDGRHVPVTVLSLEDCQVVSVRTAE-----RDGYV--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +GA K F + VP K ++ F + DA+L G+ + A+HF + +
Sbjct: 49 LQLGAGEAKQKNVAKPQREHFAKAEVPLKAEVAEFRVADDAVLEVGSTIAASHFAIGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
D+ G T +GF G MKRWGF GM ATHGV+ SHR G + RV+
Sbjct: 109 DITGHTQGKGFAGAMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVF 157
>gi|338707690|ref|YP_004661891.1| 50S ribosomal protein L3 [Zymomonas mobilis subsp. pomaceae ATCC
29192]
gi|336294494|gb|AEI37601.1| 50S ribosomal protein L3 [Zymomonas mobilis subsp. pomaceae ATCC
29192]
Length = 242
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 13/169 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++++ ++ + + +
Sbjct: 2 RTGVIAKKVGMTRLFQEDGRHVPVTVLKLEGVQVV-------------AVKNKDQDGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA S TK G F + V K KL F + DA+L GT ++A HF + +
Sbjct: 49 VQLGAGSAKAKNLTKPERGHFAKAEVELKAKLVEFPVAEDAVLEVGTAISADHFIAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
D+ G T +GF G MKRWGF G+ ATHGV+ SHR G + RV+
Sbjct: 109 DISGQTQGKGFAGAMKRWGFGGLRATHGVSLSHRSHGSTGNRQDPGRVF 157
>gi|346991250|ref|ZP_08859322.1| 50S ribosomal protein L3 [Ruegeria sp. TW15]
Length = 241
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++ + + ++ R K
Sbjct: 2 RSGIIAKKVGMTRLFMEDGKQIPVTVLHLDNLQVV-------------AQRTADKDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + +K G + + V PK+KL F ++ D ++ G ++A HF + +
Sbjct: 49 VQLGAGAAKAKRTSKAMRGHYAAAKVEPKRKLAEFRVSEDGLIDVGAEISAEHFLEGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKRW F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DVSGTSIGKGFAGAMKRWNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 159
>gi|399035014|ref|ZP_10732568.1| 50S ribosomal protein L3, bacterial [Rhizobium sp. CF122]
gi|398067226|gb|EJL58765.1| 50S ribosomal protein L3, bacterial [Rhizobium sp. CF122]
Length = 213
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 13/161 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ ++ R K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHVPVTVLRMEGCQVV-------------AQRTVEKNGYAA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + +K G F + V PK KL F +T D +L GT L A HF + +
Sbjct: 49 VQLGAGTAKVKNTSKAMRGNFAVANVEPKAKLAEFRVTEDNLLEVGTELKAGHFAAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
DV G T+ +GF G MKR GF G+ ATHGV+ SHR G S
Sbjct: 109 DVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGS 149
>gi|254512299|ref|ZP_05124366.1| ribosomal protein L3 [Rhodobacteraceae bacterium KLH11]
gi|221536010|gb|EEE38998.1| ribosomal protein L3 [Rhodobacteraceae bacterium KLH11]
Length = 241
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++ + + ++ R K
Sbjct: 2 RSGIIAKKVGMTRLFMEDGKQIPVTVLHLDNLQVV-------------AQRTADKDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + +K G + + V PK+KL F ++ D ++ G ++A HF + +
Sbjct: 49 VQLGAGAAKAKRTSKAMRGHYAAAKVEPKRKLAEFRVSEDGLIDVGAEISAEHFLEGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKRW F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DVSGTSIGKGFAGAMKRWNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 159
>gi|254474359|ref|ZP_05087745.1| ribosomal protein L3 [Ruegeria sp. R11]
gi|214028602|gb|EEB69437.1| ribosomal protein L3 [Ruegeria sp. R11]
Length = 239
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L++++G++ T++Q+ + R E K
Sbjct: 4 RSGIIAKKVGMTRLFLEDGKQVPVTVLQLDGLQVT-------------AQRTEEKDGYTA 50
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA S +K G F + V PK+KL F + D ++ G ++A HF + +
Sbjct: 51 VQLGAGSAKVKRVSKAMRGHFAAAKVEPKRKLVEFRVPADGLIEVGAEISAEHFLEGQKV 110
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKRW F G+ A+HGV+ SHR G +V+ G
Sbjct: 111 DVTGTSIGKGFAGAMKRWNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 161
>gi|408380612|ref|ZP_11178196.1| 50S ribosomal protein L3 [Agrobacterium albertimagni AOL15]
gi|407745825|gb|EKF57357.1| 50S ribosomal protein L3 [Agrobacterium albertimagni AOL15]
Length = 212
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ R K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHIPVTVLRLDNVQVV-------------AQRTADKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +GA + +K G F + V PK KL F ++ D ++ G LTA+HF + +
Sbjct: 49 LQLGAGTSKVKNTSKGLRGHFAAASVEPKAKLVEFRVSEDNLIDVGAQLTASHFEAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GF G MKR F G+ ATHGV+ SHR G S +V+ G
Sbjct: 109 DVTGTTIGKGFAGAMKRHNFGGLRATHGVSVSHRSHGSTGSNQDPGKVWKG 159
>gi|159042832|ref|YP_001531626.1| 50S ribosomal protein L3 [Dinoroseobacter shibae DFL 12]
gi|226725165|sp|A8LM48.1|RL3_DINSH RecName: Full=50S ribosomal protein L3
gi|157910592|gb|ABV92025.1| 50S ribosomal protein L3 [Dinoroseobacter shibae DFL 12]
Length = 279
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++Q+ ++ R K
Sbjct: 2 RSGVIAKKVGMTRLFMEDGKQVPVTVLQLDKLQVV-------------AQRTAEKDGYSA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + TK G F + V PK+K+ F + P+ ++ G +TA H+ +++
Sbjct: 49 VQLGAGTAKAKRTTKAMRGHFAAASVEPKRKVAEFRVAPENLINVGEEITADHYFEGQYV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DVSGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 159
>gi|149915844|ref|ZP_01904368.1| 30S ribosomal protein S10 [Roseobacter sp. AzwK-3b]
gi|149810167|gb|EDM70013.1| 30S ribosomal protein S10 [Roseobacter sp. AzwK-3b]
Length = 276
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G + T++Q+ ++ PE K
Sbjct: 3 RSGVIAKKVGMTRLFMEDGRQVPVTVLQLDKLQVVAQRTPE-------------KDGYTA 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA S ++ G F ++ V PK+K+ F + P+ M+ G +TA H+ +++
Sbjct: 50 VQLGAGSIKAKRVSQPMRGHFASAKVEPKRKIAEFRVAPENMINVGEEITADHYFAGQYV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR FKG+ THGV+ SHR G +V+ G
Sbjct: 110 DVCGTSIGKGFAGAMKRHNFKGLEMTHGVSISHRSHGSTGQCQDPGKVFKG 160
>gi|330814199|ref|YP_004358438.1| 50S ribosomal protein L3P [Candidatus Pelagibacter sp. IMCC9063]
gi|327487294|gb|AEA81699.1| LSU ribosomal protein L3p (L3e) [Candidatus Pelagibacter sp.
IMCC9063]
Length = 272
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R GL+GK IG + ++GE T++QV I++ I + KR
Sbjct: 2 RLGLVGKKIGMTQKFYESGEAVPVTVLQVEPGKIVEVIEKD-------------KRGYSA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
LLVG S TK G + + KK L + + G+ +T + ++++
Sbjct: 49 LLVGYGHIKSSKLTKSMKGFYAKKSLEAKKFLKEYRVENTEEFKAGSDVTLDILKDKKYV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D+R T+ +GF GVMKRW F G+ ATHGV+ SHR G +V+ G
Sbjct: 109 DIRSKTIGKGFAGVMKRWNFGGLRATHGVSVSHRSHGSTGQRQDPGKVFKG 159
>gi|357977006|ref|ZP_09140977.1| 50S ribosomal protein L3 [Sphingomonas sp. KC8]
Length = 250
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++ + N ++ E R Y
Sbjct: 2 RTGVIAKKMGMTRLFQEDGRHVPVTVLSLEGNQVVSVRDKE-----RDGYV--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + +K G F + V PK +L F + DA+L G + A HF +++
Sbjct: 49 VQLGAGTAKVKNISKPERGHFAKAQVEPKARLVEFRVADDAVLEVGAEIAADHFVAGQYV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
D+ G T +GF G MKRW F G+ ATHGV+ SHR G
Sbjct: 109 DIAGQTQGKGFAGAMKRWNFGGLRATHGVSVSHRSHGS 146
>gi|423349452|ref|ZP_17327108.1| 50S ribosomal protein L3 [Scardovia wiggsiae F0424]
gi|393703000|gb|EJD65202.1| 50S ribosomal protein L3 [Scardovia wiggsiae F0424]
Length = 216
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 84/177 (47%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
++++ RT LIGK +G +W +NG TLV V N ++ + E+ +
Sbjct: 1 MSSNQNRTALIGKKLGMSQVWDENGFFVPVTLVDVATN-VVTAVKSEDTDGYK------- 52
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
+ +G + DP+ TK G F +GV P++ L PG L A F
Sbjct: 53 -----AIQLGYGAIDPTKVTKPLAGHFAKAGVTPRRHLVEVRTEDADSYEPGQELAADTF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ + +DV G T +GF G +KRWGFK THG K+ RR G I + A +RV G
Sbjct: 108 KDGDRVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSIGACATPSRVLKG 164
>gi|238601104|ref|XP_002395321.1| hypothetical protein MPER_04643 [Moniliophthora perniciosa FA553]
gi|215465855|gb|EEB96251.1| hypothetical protein MPER_04643 [Moniliophthora perniciosa FA553]
Length = 259
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
Query: 190 TKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQG 249
T++ G F+ + VP K+ + F ITPDA +P GT L+A HF P +F+DV ++ +GF G
Sbjct: 36 TQQMRGHFRKAQVPCKRVVREFPITPDAHVPVGTTLSAIHFVPGQFVDVIAKSIGKGFAG 95
Query: 250 VMKRWGFKGMPATHGVTKSHRRGGCIASGA 279
MKRWGFKG+ A+HGV+ SHR G A+GA
Sbjct: 96 GMKRWGFKGLRASHGVSISHRSIG--ATGA 123
>gi|77462259|ref|YP_351763.1| 50S ribosomal protein L3 [Rhodobacter sphaeroides 2.4.1]
gi|126461135|ref|YP_001042249.1| 50S ribosomal protein L3 [Rhodobacter sphaeroides ATCC 17029]
gi|221638113|ref|YP_002524375.1| 50S ribosomal protein L3 [Rhodobacter sphaeroides KD131]
gi|429207692|ref|ZP_19198948.1| LSU ribosomal protein L3p (L3e) [Rhodobacter sp. AKP1]
gi|109893550|sp|Q3J5S2.1|RL3_RHOS4 RecName: Full=50S ribosomal protein L3
gi|77386677|gb|ABA77862.1| LSU ribosomal protein L3P [Rhodobacter sphaeroides 2.4.1]
gi|126102799|gb|ABN75477.1| LSU ribosomal protein L3P [Rhodobacter sphaeroides ATCC 17029]
gi|221158894|gb|ACL99873.1| 50S ribosomal protein L3 [Rhodobacter sphaeroides KD131]
gi|428189085|gb|EKX57641.1| LSU ribosomal protein L3p (L3e) [Rhodobacter sp. AKP1]
Length = 240
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L++++G++ T++Q+ ++ R K
Sbjct: 2 RSGVIAKKLGMTRLFLEDGKQVPVTVLQLDSLQVV-------------AQRTTEKDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + + G F + V PK+K+ F +TPD ++ G +TA H+ +F+
Sbjct: 49 VQLGAGAAKAKRVSAAQRGHFAKANVEPKRKIAEFRVTPDCLIDVGAEITADHYFAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D+ G ++ +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DIAGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 159
>gi|255722617|ref|XP_002546243.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240136732|gb|EER36285.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 279
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 88/173 (50%), Gaps = 14/173 (8%)
Query: 116 KRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLG 175
+R GL G + ++GE T++++ +I E++ +
Sbjct: 56 ERPGLFAIKRGMITWFRESGEAIPATVLEIDSCEVINSKNSEDYGYD------------- 102
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRF-IITPDAMLPPGTPLTAAHFRPRE 234
+LVG+ + + +F+++G+ PK K+ F ++ D ++ GT LTA +F +
Sbjct: 103 SILVGSIDKLKNNKYETSIKMFEDAGISPKYKIGEFRVLKSDNLIEKGTELTADYFEVGQ 162
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+D++G+T +GF GVMKRWGF G ATHGV+K+HR G + RV PG
Sbjct: 163 KVDIKGITKGKGFAGVMKRWGFSGGRATHGVSKAHRTPGAMGGNQNPGRVLPG 215
>gi|392383011|ref|YP_005032208.1| 50S ribosomal subunit protein L3 [Azospirillum brasilense Sp245]
gi|356877976|emb|CCC98838.1| 50S ribosomal subunit protein L3 [Azospirillum brasilense Sp245]
Length = 225
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 66/119 (55%)
Query: 167 RGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLT 226
R E K + +GA + TK G F + V PK+KL F + DA++ G L+
Sbjct: 28 RTEDKDGYTAVQLGAGAIKVKNVTKPQRGHFAKARVEPKRKLVEFRVDADALIEVGAELS 87
Query: 227 AAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
AAHF P +F+DV G ++ +GF G MKRW F G+ ATHGV+ SHR G + +V+
Sbjct: 88 AAHFLPGQFVDVTGTSIGKGFAGPMKRWNFGGLRATHGVSVSHRSHGSTGNRQDPGKVF 146
>gi|126739691|ref|ZP_01755383.1| 50S ribosomal protein L3 [Roseobacter sp. SK209-2-6]
gi|126719337|gb|EBA16047.1| 50S ribosomal protein L3 [Roseobacter sp. SK209-2-6]
Length = 234
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++ + ++ R E K
Sbjct: 2 RSGIIAKKVGMTRLFMEDGQQIPVTVLHLDGLQVV-------------SQRTEDKDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA S +K G F S V PK+KL F + DA++ G ++A HF + +
Sbjct: 49 VQLGAGSAKVKRVSKAMRGHFAASKVEPKRKLVEFRVPADALIEVGAEISAEHFLEGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 159
>gi|83594020|ref|YP_427772.1| 50S ribosomal protein L3 [Rhodospirillum rubrum ATCC 11170]
gi|386350772|ref|YP_006049020.1| 50S ribosomal protein L3 [Rhodospirillum rubrum F11]
gi|109893549|sp|Q2RQW0.1|RL3_RHORT RecName: Full=50S ribosomal protein L3
gi|83576934|gb|ABC23485.1| LSU ribosomal protein L3P [Rhodospirillum rubrum ATCC 11170]
gi|346719208|gb|AEO49223.1| 50S ribosomal protein L3 [Rhodospirillum rubrum F11]
Length = 235
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+GLI + +G L+ G T+++V ++ R
Sbjct: 2 RSGLIAQKVGMTRLFTDEGTHVPVTVLKVEACQVV-------------AVRTSETDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA +K G F + V PKKK+ F ++ D +L PG L+AAHF + +
Sbjct: 49 VQLGAGVAKVKRTSKAMRGHFAAAKVEPKKKVVEFRVSEDCLLEPGAELSAAHFVAGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D+ G T+ +GF G MKR F+G+ ATHGV+ SHR G RV+ G
Sbjct: 109 DIAGTTIGKGFAGAMKRHNFRGLEATHGVSVSHRSHGSTGQCQDPGRVFKG 159
>gi|212288598|sp|A5V602.2|RL3_SPHWW RecName: Full=50S ribosomal protein L3
Length = 251
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 18/175 (10%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++ + + ++ R + +
Sbjct: 2 RTGVIAKKMGMTRLFQEDGRHVPVTVLALENVQVV-------------ARREQDRDGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA S P TK G F + V PK + F ++ D +L G ++A H+ +F+
Sbjct: 49 VQLGAGSAKPKNLTKPERGHFGKAEVEPKAFVAEFRVSEDGLLDVGAEISADHYVAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQ 291
D++G T +GF G MKRWGF G+ ATHGV+ SHR G R PG V +
Sbjct: 109 DIQGSTQGKGFAGGMKRWGFGGLRATHGVSVSHRSLGSTGQ-----RQDPGKVFK 158
>gi|421599334|ref|ZP_16042564.1| 50S ribosomal protein L3 [Bradyrhizobium sp. CCGE-LA001]
gi|404268551|gb|EJZ33001.1| 50S ribosomal protein L3 [Bradyrhizobium sp. CCGE-LA001]
Length = 237
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 16/165 (9%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ + R E K
Sbjct: 2 RSGVIAQKVGMTRVFTEAGEHIPVTVLKLGNCQVVGH-------------RTEEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G+ S K G F + V PK+++ F +T DAM+P G + A HF +F+
Sbjct: 49 LQLGSGSRKTVYMPKAERGQFAVAKVEPKRRVEEFRVTADAMIPVGAEIQADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK 281
DV G +V +GF G MKRW F G+ ATHGV+ SHR I S G+
Sbjct: 109 DVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR---SIGSTGGR 150
>gi|383645523|ref|ZP_09957929.1| 50S ribosomal protein L3 [Sphingomonas elodea ATCC 31461]
Length = 249
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 13/169 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ +G T++ + ++ R K
Sbjct: 2 RTGVIAKKMGMTRLFQDDGRHVPVTVLALEGVQVV-------------AQRTTEKDGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ VGA + K G F + V PK LC F + D +L G ++A HF + +
Sbjct: 49 VQVGAGTAKAKNVAKPQRGHFGKAEVEPKAILCEFRVEEDGLLDVGAEISADHFVAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
DV G T +GF G MKRWGF G+ ATHGV+ SHR G + RV+
Sbjct: 109 DVSGRTQGKGFAGAMKRWGFGGLRATHGVSVSHRSHGSTGNRQDPGRVF 157
>gi|27380511|ref|NP_772040.1| 50S ribosomal protein L3 [Bradyrhizobium japonicum USDA 110]
gi|42559627|sp|Q89J84.1|RL3_BRAJA RecName: Full=50S ribosomal protein L3
gi|27353675|dbj|BAC50665.1| 50S ribosomal protein L3 [Bradyrhizobium japonicum USDA 110]
Length = 238
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 16/165 (9%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ + R E K
Sbjct: 2 RSGVIAQKVGMTRVFTEAGEHIPVTVLKLGNCQVVGH-------------RTEEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G+ S K G F + V PK+++ F +T DAM+P G + A HF +F+
Sbjct: 49 LQLGSGSRKTVYMPKAERGQFAVAKVEPKRRVEEFRVTADAMIPVGAEIQADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK 281
DV G +V +GF G MKRW F G+ ATHGV+ SHR I S G+
Sbjct: 109 DVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR---SIGSTGGR 150
>gi|299135257|ref|ZP_07028448.1| 50S ribosomal protein L3 [Afipia sp. 1NLS2]
gi|298590234|gb|EFI50438.1| 50S ribosomal protein L3 [Afipia sp. 1NLS2]
Length = 243
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 13/154 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ +R + K
Sbjct: 2 RSGVIAQKVGMTRVFTEAGEHIPVTVLKLGNCQVV-------------GHRTKDKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G+ + K G F + V PK+K+ F ++ DA++P G +TA HF +F+
Sbjct: 49 LQLGSGARKSVYMPKAERGQFAVAKVEPKRKVVEFRVSDDAVIPVGAEITADHFVAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 109 DVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHR 142
>gi|334141183|ref|YP_004534389.1| 50S ribosomal protein L3 [Novosphingobium sp. PP1Y]
gi|333939213|emb|CCA92571.1| large subunit ribosomal protein L3 [Novosphingobium sp. PP1Y]
Length = 252
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 83/175 (47%), Gaps = 18/175 (10%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++ + D ++ +R Y
Sbjct: 2 RTGVIAKKVGMTRLFQEDGRHVPVTVLALEDCQVVSV-----RTADRDGYV--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA K F + VP K ++ F + DA+L G+ + A+HF P + +
Sbjct: 49 VQLGAGEAKQKNVAKPQREHFAKAEVPLKMRVAEFRVADDALLDVGSTIAASHFVPGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQ 291
DV G T +GF G MKRWGF G+ ATHGV+ SHR G + R PG V +
Sbjct: 109 DVAGHTQGKGFAGAMKRWGFGGLRATHGVSLSHRSHGSTGN-----RQDPGKVFK 158
>gi|146278568|ref|YP_001168727.1| 50S ribosomal protein L3 [Rhodobacter sphaeroides ATCC 17025]
gi|145556809|gb|ABP71422.1| LSU ribosomal protein L3P [Rhodobacter sphaeroides ATCC 17025]
Length = 239
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L++++G++ T++Q+ ++ R K
Sbjct: 2 RSGVIAKKLGMTRLFLEDGKQVPVTVLQLDSLQVV-------------AQRTAEKDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + + G F + V PK+K+ F +TPD ++ G +TA H+ +F+
Sbjct: 49 VQLGAGAAKAKRTSAGMRGHFAKANVEPKRKIAEFRVTPDCLIDVGAEITADHYFAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D+ G ++ +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DIAGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 159
>gi|308814220|ref|XP_003084415.1| putative ribosomal protein L3 (ISS) [Ostreococcus tauri]
gi|116056300|emb|CAL56683.1| putative ribosomal protein L3 (ISS) [Ostreococcus tauri]
Length = 312
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 83/176 (47%), Gaps = 12/176 (6%)
Query: 112 TTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPK 171
+T+ +RTG IG G W G + T+V + +++ + R G
Sbjct: 56 STAPRRTGAIGIKCGMTADWDARGCRHALTVVWLDGVEVVR-------RTGRDGANGYDA 108
Query: 172 RKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFR 231
++G A+ TK G F G K+ L F ++ L PGT +TAAHF
Sbjct: 109 VQIGYGARKAKG-----VTKAELGHFVRHGSGIKRGLKEFRVSRCGTLTPGTVITAAHFA 163
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+++DV G T +GFQG MKRWGF G PATHG TK HR G I RV+ G
Sbjct: 164 AGQYVDVGGTTKGKGFQGPMKRWGFAGQPATHGNTKKHRAHGSIGQCQDPGRVFKG 219
>gi|288957422|ref|YP_003447763.1| 50S ribosomal protein L3 [Azospirillum sp. B510]
gi|288909730|dbj|BAI71219.1| large subunit ribosomal protein L3 [Azospirillum sp. B510]
Length = 236
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+GLI + +G ++ +G+ T+++V ++ R E K
Sbjct: 2 RSGLIAQKVGMTRVFTDDGQHVPVTVLKVDSCQVV-------------AVRTEEKDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + K G F + V PK+KL F + DA++ G L+ HF +++
Sbjct: 49 VQLGAGAIKVKNVNKPERGHFAKARVEPKRKLVEFRVDADALIEVGAELSVTHFVAGQYV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G ++ +GF G MKRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTSIGKGFAGAMKRWNFGGLRATHGVSVSHRSHGS 146
>gi|302382618|ref|YP_003818441.1| 50S ribosomal protein L3 [Brevundimonas subvibrioides ATCC 15264]
gi|302193246|gb|ADL00818.1| 50S ribosomal protein L3 [Brevundimonas subvibrioides ATCC 15264]
Length = 250
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G ++ +G+ T++Q+ D ++ E R Y
Sbjct: 2 RTGVIAKKLGMTRVFADDGQHVPVTVLQLDDCQVVGQRTQE-----RDGYV--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +GA + K F + V PK + F +T DAM+ G L+A HF + +
Sbjct: 49 LQLGAGTKKAKNTNKAQRTTFATAEVEPKHVVMEFRVTDDAMIDVGATLSADHFVVGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
D++G T+ +GFQG MKRW F G+ ATHGV+ SHR G
Sbjct: 109 DIQGETIGKGFQGGMKRWNFGGLRATHGVSVSHRSLGS 146
>gi|58038855|ref|YP_190819.1| 50S ribosomal protein L3 [Gluconobacter oxydans 621H]
gi|81819160|sp|Q5FTY3.1|RL3_GLUOX RecName: Full=50S ribosomal protein L3
gi|58001269|gb|AAW60163.1| LSU ribosomal protein L3P [Gluconobacter oxydans 621H]
Length = 227
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTGLI K +G L+ ++G T++ + + ++ E R Y
Sbjct: 2 RTGLIAKKLGMTRLFKEDGTHVPVTVLHLDNVEVVDARTNE-----RDGYT--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G + TK G F + V PK+ L F ++ DA+L GT L+AAHF + +
Sbjct: 49 IQLGLGNAKVKNVTKANRGHFARTKVEPKRHLAEFRVSEDALLEAGTKLSAAHFVVGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G + +GF GVMKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DVTGQSKGKGFAGVMKRHNFAGLEASHGVSISHRSHGSTGQRQDPGKVFKG 159
>gi|395493810|ref|ZP_10425389.1| 50S ribosomal protein L3 [Sphingomonas sp. PAMC 26617]
Length = 251
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ +G T++ + + ++ + +R Y
Sbjct: 2 RTGVIAKKLGMTRLFQDDGRHVPVTVLALENLQVVAV-----READRDGYV--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA K G F + V PK KL F + DA+L G ++A H+ + +
Sbjct: 49 VQLGAGVAKAKNVAKPQRGHFGKAEVEPKAKLAEFRVAEDAVLEVGATISADHYVSGQIV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
D++G+T +GFQG MKRWGF G+ ATHGV+ SHR G
Sbjct: 109 DIQGVTQGKGFQGGMKRWGFGGLRATHGVSVSHRSLGS 146
>gi|56698636|ref|YP_169013.1| 50S ribosomal protein L3 [Ruegeria pomeroyi DSS-3]
gi|81819888|sp|Q5LLU6.1|RL3_SILPO RecName: Full=50S ribosomal protein L3
gi|56680373|gb|AAV97039.1| ribosomal protein L3 [Ruegeria pomeroyi DSS-3]
Length = 241
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 17/173 (9%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++Q+ + ++ E K G
Sbjct: 2 RSGIIAKKVGMTRLFMEDGKQIPVTVLQLDNLQVVAQRTTE---------------KDGY 46
Query: 177 LLVGAESGDPSL--YTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
V +G P + +K G F V PK+KL F ++ DA++ G ++A HF +
Sbjct: 47 TAVQLGAGTPKIKRVSKAMRGHFAAQKVEPKRKLAEFRVSEDALIEVGAEISAEHFLTGQ 106
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G ++ +GF G MKR F G+ A+HGV+ SHR G RV+ G
Sbjct: 107 KVDVSGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGRVFKG 159
>gi|404254136|ref|ZP_10958104.1| 50S ribosomal protein L3 [Sphingomonas sp. PAMC 26621]
Length = 251
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ +G T++ + + ++ + +R Y
Sbjct: 2 RTGVIAKKLGMTRLFQDDGRHVPVTVLALENLQVVAV-----READRDGYV--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA K G F + V PK KL F + DA+L G ++A H+ + +
Sbjct: 49 VQLGAGVAKAKNVAKPQRGHFGKAEVEPKAKLAEFRVAEDAVLEVGATISADHYVSGQIV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
D++G+T +GFQG MKRWGF G+ ATHGV+ SHR G
Sbjct: 109 DIQGVTQGKGFQGGMKRWGFGGLRATHGVSVSHRSLGS 146
>gi|409436834|ref|ZP_11263993.1| 50S ribosomal subunit protein L3 [Rhizobium mesoamericanum STM3625]
gi|408751308|emb|CCM75147.1| 50S ribosomal subunit protein L3 [Rhizobium mesoamericanum STM3625]
Length = 213
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 13/161 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ ++ R K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHVPVTVLRMEGCQVV-------------AQRTVEKNGYAA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + +K G F + V PK KL F ++ D +L GT L A HF + +
Sbjct: 49 VQLGAGTAKVKNTSKAMRGNFAVANVEPKAKLAEFRVSEDNLLEVGTELKAGHFAAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
DV G T+ +GF G MKR GF G+ ATHGV+ SHR G S
Sbjct: 109 DVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGS 149
>gi|262277094|ref|ZP_06054887.1| 50S ribosomal protein L3 [alpha proteobacterium HIMB114]
gi|262224197|gb|EEY74656.1| 50S ribosomal protein L3 [alpha proteobacterium HIMB114]
Length = 260
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 78/169 (46%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+GK +G + +NGE T++++ ++ I E KR +L
Sbjct: 4 GLVGKKLGMTQRFFENGESLPVTVLKIEKAKVVDVINKE-------------KRGYSAVL 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
VG S TK+ G F PKK L F + L PGT + + ++++DV
Sbjct: 51 VGYGHIKNSKLTKQMKGFFAKKSQEPKKILKEFRLENTKELKPGTEINLDVLKDKKYVDV 110
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
R T+ +GF G MKR F GM ATHGV+ SHR G +V+ G
Sbjct: 111 RAKTIGKGFAGSMKRHNFGGMRATHGVSISHRAHGSTGQCQDPGKVFKG 159
>gi|3984|emb|CAA46148.1| YmL9 mitochondrial ribosomal protein [Saccharomyces cerevisiae]
Length = 269
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 98/203 (48%), Gaps = 15/203 (7%)
Query: 87 APAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKN-GEKCRTTLVQV 145
AP++ + I T + P KR GLI + G P + K+ GE+ T+++V
Sbjct: 28 APSIANSITTEAPAINHSPELANARKWLPKRCGLITRKKGMMPYFDKSTGERSAATILEV 87
Query: 146 VDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPK 205
+ +I + E C VG S S +++ G F + V PK
Sbjct: 88 NNVEVIMH------------RTSEVNGYFACQ-VGYGSRHLSKVSRQMLGHFASKVVNPK 134
Query: 206 KKLCRFIITPD-AMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHG 264
+ + +F + + ++PPGT L + F+ +++DVR ++ +GF GVMKR+GFKG+ A+HG
Sbjct: 135 EHVAQFRVKDEKGLIPPGTLLKPSFFKEGQYVDVRSVSKGKGFTGVMKRYGFKGLRASHG 194
Query: 265 VTKSHRRGGCIASGAGKARVYPG 287
+ HR GG RV PG
Sbjct: 195 TSIMHRHGGSYGQNQDPGRVLPG 217
>gi|222085675|ref|YP_002544205.1| 50S ribosomal protein L3 [Agrobacterium radiobacter K84]
gi|221723123|gb|ACM26279.1| 50S ribosomal protein L3 [Agrobacterium radiobacter K84]
Length = 219
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 23/176 (13%)
Query: 102 KIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKP 161
+IEP+ R+G+I + +G ++ GE T++++ ++
Sbjct: 3 RIEPM----------RSGVIAQKVGMTRVYNDAGEHVPVTVLRMEGCQVV---------- 42
Query: 162 NRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPP 221
R K + +GA +K G F + V PK KL F ++ D +L
Sbjct: 43 ---AQRTVEKNGYTAVQLGAGQAKVKNTSKALRGHFAVASVEPKAKLVEFRVSDDNLLEV 99
Query: 222 GTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
GT + AAHF + +DV G T+ +GF G MKR GF G+ ATHGV+ SHR G S
Sbjct: 100 GTEIKAAHFSAGQLVDVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGS 155
>gi|440226337|ref|YP_007333428.1| 50S ribosomal protein L3 [Rhizobium tropici CIAT 899]
gi|440037848|gb|AGB70882.1| 50S ribosomal protein L3 [Rhizobium tropici CIAT 899]
Length = 213
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 76/161 (47%), Gaps = 13/161 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ ++ R K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHVPVTVLRLDGCQVV-------------AQRTVEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA TK G F + V PK KL F +T D +L GT L A HF + +
Sbjct: 49 VQLGAGQAKVKNTTKALRGHFAVASVEPKAKLAEFRVTEDNLLEVGTELNAGHFTAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
DV G T+ +GF G +KR GF G+ ATHGV+ SHR G S
Sbjct: 109 DVTGTTIGKGFAGAIKRHGFGGLRATHGVSVSHRSHGSTGS 149
>gi|148284214|ref|YP_001248304.1| 50S ribosomal protein L3 [Orientia tsutsugamushi str. Boryong]
gi|146739653|emb|CAM79442.1| 50S ribosomal protein L3 [Orientia tsutsugamushi str. Boryong]
Length = 229
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 22/184 (11%)
Query: 106 LQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHII--KYIPPEEFKPNR 163
+ E + R+GLI + +G + ++G K TL++V ++ K + + +
Sbjct: 7 ISACEFKMKNARSGLIAEKLGMSSKFDESGRKVAITLLKVDVCQVLWHKLVSKDGYN--- 63
Query: 164 KPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGT 223
+++G ++ P K +F + + PK + F + D ML +
Sbjct: 64 ------------AVILGYKNISPFKVKKPMHSIFSRAKIEPKAIIKEFKVAEDKMLEIAS 111
Query: 224 PLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKAR 283
L A++FR +++DVRG+T+ +GF G MKR GF+G+ A+HGV+ SHR G + R
Sbjct: 112 ILDASYFRVGQYVDVRGVTIGKGFAGAMKRHGFRGLEASHGVSISHRSHGSTGN-----R 166
Query: 284 VYPG 287
YPG
Sbjct: 167 AYPG 170
>gi|398377349|ref|ZP_10535524.1| 50S ribosomal protein L3, bacterial [Rhizobium sp. AP16]
gi|397726687|gb|EJK87119.1| 50S ribosomal protein L3, bacterial [Rhizobium sp. AP16]
Length = 213
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 13/161 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ ++ R K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHVPVTVLRMEGCQVV-------------AQRTVEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA +K G F + V PK KL F ++ D +L GT + AAHF + +
Sbjct: 49 VQLGAGQAKVKNTSKALRGHFAVASVEPKAKLVEFRVSDDNLLEVGTEIKAAHFSAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
DV G T+ +GF G MKR GF G+ ATHGV+ SHR G S
Sbjct: 109 DVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGS 149
>gi|393719127|ref|ZP_10339054.1| 50S ribosomal protein L3 [Sphingomonas echinoides ATCC 14820]
Length = 251
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G + +G T++ + + ++ + +R Y
Sbjct: 2 RTGVIAKKMGMTRWFQDDGRHVPVTVLALENLQVVAV-----READRDGYV--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + K G F + V PK KL F ++ DA+L G ++A H+ + +
Sbjct: 49 VQLGAGTAKAKNVAKPQRGHFGKAEVEPKAKLAEFRVSEDALLEVGATISADHYVAGQIV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
D++G+T +GFQG MKRWGF G+ ATHGV+ SHR G
Sbjct: 109 DIQGVTQGKGFQGGMKRWGFGGLRATHGVSVSHRSLGS 146
>gi|6321659|ref|NP_011736.1| mitochondrial 54S ribosomal protein YmL9 [Saccharomyces cerevisiae
S288c]
gi|1710598|sp|P31334.3|RM09_YEAST RecName: Full=54S ribosomal protein L9, mitochondrial; AltName:
Full=YmL9; Flags: Precursor
gi|886912|emb|CAA61168.1| ORF 269 [Saccharomyces cerevisiae]
gi|1323396|emb|CAA97248.1| MRPL9 [Saccharomyces cerevisiae]
gi|45270438|gb|AAS56600.1| YGR220C [Saccharomyces cerevisiae]
gi|151943496|gb|EDN61807.1| YmL9 [Saccharomyces cerevisiae YJM789]
gi|190406772|gb|EDV10039.1| 60S ribosomal protein L9, mitochondrial precursor [Saccharomyces
cerevisiae RM11-1a]
gi|207344963|gb|EDZ71935.1| YGR220Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272642|gb|EEU07619.1| Mrpl9p [Saccharomyces cerevisiae JAY291]
gi|259146721|emb|CAY79978.1| Mrpl9p [Saccharomyces cerevisiae EC1118]
gi|285812413|tpg|DAA08313.1| TPA: mitochondrial 54S ribosomal protein YmL9 [Saccharomyces
cerevisiae S288c]
gi|392299474|gb|EIW10568.1| Mrpl9p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 269
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 97/203 (47%), Gaps = 15/203 (7%)
Query: 87 APAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKN-GEKCRTTLVQV 145
AP++ + I T + P KR GLI + G P + K+ GE+ T+++V
Sbjct: 28 APSIANSITTEAPAINHSPELANARKWLPKRCGLITRKKGMMPYFDKSTGERSAATILEV 87
Query: 146 VDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPK 205
+ +I + E C VG S S +++ G F + V PK
Sbjct: 88 NNVEVIMH------------RTSEVNGYFACQ-VGYGSRHLSKVSRQMLGHFASKVVNPK 134
Query: 206 KKLCRFIITPD-AMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHG 264
+ + F + + ++PPGT L + F+ +++DVR ++ +GF GVMKR+GFKG+ A+HG
Sbjct: 135 EHVAEFRVKDEKGLIPPGTLLKPSFFKEGQYVDVRSVSKGKGFTGVMKRYGFKGLRASHG 194
Query: 265 VTKSHRRGGCIASGAGKARVYPG 287
+ HR GG RV PG
Sbjct: 195 TSIMHRHGGSYGQNQDPGRVLPG 217
>gi|349578425|dbj|GAA23591.1| K7_Mrpl9p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 269
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 97/203 (47%), Gaps = 15/203 (7%)
Query: 87 APAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKN-GEKCRTTLVQV 145
AP++ + I T + P KR GLI + G P + K+ GE+ T+++V
Sbjct: 28 APSIANSIATEAPAINHSPELANARKWLPKRCGLITRKKGMMPYFDKSTGERSAATILEV 87
Query: 146 VDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPK 205
+ +I + E C VG S S +++ G F + V PK
Sbjct: 88 NNVEVIMH------------RTSEVNGYFACQ-VGYGSRHLSKVSRQMLGHFASKVVNPK 134
Query: 206 KKLCRFIITPD-AMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHG 264
+ + F + + ++PPGT L + F+ +++DVR ++ +GF GVMKR+GFKG+ A+HG
Sbjct: 135 EHVAEFRVKDEKGLIPPGTLLKPSFFKEGQYVDVRSVSKGKGFTGVMKRYGFKGLRASHG 194
Query: 265 VTKSHRRGGCIASGAGKARVYPG 287
+ HR GG RV PG
Sbjct: 195 TSIMHRHGGSYGQNQDPGRVLPG 217
>gi|163796919|ref|ZP_02190876.1| Ribosomal protein L3 [alpha proteobacterium BAL199]
gi|159177908|gb|EDP62457.1| Ribosomal protein L3 [alpha proteobacterium BAL199]
Length = 249
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ G T+++V ++ R + K
Sbjct: 2 RSGMIAQKVGMTRVFTDEGTHVPVTVLKVDGCQVVSV-------------RTQDKDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G P TK G F +GV PK+KL F +T DA+L G L+ HF + +
Sbjct: 49 VQLGVGVRKPKHTTKPMRGHFAKAGVEPKRKLVEFRVTEDALLDVGAELSVEHFVAGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ A+HGV+ SHR G + RV+ G
Sbjct: 109 DVTGTSIGKGFAGAMKRHNFSGLRASHGVSLSHRSHGSTGNNQDPGRVWKG 159
>gi|66805433|ref|XP_636449.1| ribosomal protein L3, mitochondrial [Dictyostelium discoideum AX4]
gi|60464827|gb|EAL62946.1| ribosomal protein L3, mitochondrial [Dictyostelium discoideum AX4]
Length = 351
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 86/178 (48%), Gaps = 17/178 (9%)
Query: 112 TTSSKRTGLIGKIIGQYPLWMKNGEKCR-TTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
T S R G IGK +G ++ G+ T++Q+ +N + + RK G
Sbjct: 61 TKVSHRVGAIGKKVGMLTTYI--GDIAYPVTVIQLPNNQVTQI--------KRKVNDG-- 108
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAM-LPPGTPLTAAH 229
+ + VGA+ +K G F + VPPK+ L F +T +AM L GTP+ H
Sbjct: 109 ---VDMIQVGADEIKLKNVSKTLQGHFAKANVPPKRVLMEFRVTRNAMNLELGTPILPKH 165
Query: 230 FRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F P + + V+G +GF G MKRW F G PATHGV+ +HR G RV+ G
Sbjct: 166 FLPGQLITVKGTNTGKGFAGGMKRWHFSGQPATHGVSLTHRAIGSTGCRQTPGRVFKG 223
>gi|407783107|ref|ZP_11130312.1| 50S ribosomal protein L3 [Oceanibaculum indicum P24]
gi|407203578|gb|EKE73564.1| 50S ribosomal protein L3 [Oceanibaculum indicum P24]
Length = 252
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 64/121 (52%)
Query: 167 RGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLT 226
R E K + +G +K G F + V P+KKL F ++ DA+L PG ++
Sbjct: 35 RTEEKDGYNAVQLGVGKAKVKNVSKANRGHFAKANVEPRKKLAEFRVSADALLEPGQEIS 94
Query: 227 AAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYP 286
AAHF + +DV G ++ +GF GVMKR F G+ ATHGV+ SHR G RV+
Sbjct: 95 AAHFVAGQKVDVTGTSIGKGFAGVMKRHNFGGLRATHGVSISHRSHGSTGQRQDPGRVFK 154
Query: 287 G 287
G
Sbjct: 155 G 155
>gi|119025339|ref|YP_909184.1| 50S ribosomal protein L3 [Bifidobacterium adolescentis ATCC 15703]
gi|154486747|ref|ZP_02028154.1| hypothetical protein BIFADO_00572 [Bifidobacterium adolescentis
L2-32]
gi|166233119|sp|A1A069.1|RL3_BIFAA RecName: Full=50S ribosomal protein L3
gi|118764923|dbj|BAF39102.1| 50S ribosomal protein L3 [Bifidobacterium adolescentis ATCC 15703]
gi|154084610|gb|EDN83655.1| 50S ribosomal protein L3 [Bifidobacterium adolescentis L2-32]
Length = 213
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 80/173 (46%), Gaps = 13/173 (7%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
S RT L+GK +G +W +NG TLV V N ++ + EE G +L
Sbjct: 2 SNRTALLGKKLGMSQVWDENGFFVPVTLVDVSTN-VVTAVKSEESD-------GYKAVQL 53
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
G V DP+ TK G F +GV P++ L PG LTA F
Sbjct: 54 GYGQV-----DPTKVTKPLAGHFAKAGVTPRRHLAEVRTDNAEEFEPGQELTAELFPEGT 108
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G T +GF G +KRWGFK THG K+ RR G + + A +R+ G
Sbjct: 109 LVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKG 161
>gi|384918429|ref|ZP_10018506.1| 50S ribosomal protein L3 [Citreicella sp. 357]
gi|384467683|gb|EIE52151.1| 50S ribosomal protein L3 [Citreicella sp. 357]
Length = 280
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++QV ++ R K
Sbjct: 3 RSGIIAKKVGMTRLFMEDGKQIPVTVLQVEGLQVV-------------ANRTAEKDGYTA 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + TK G F + V PK+K+ F + + ++ G +TA H+ +++
Sbjct: 50 VQLGAGTAKAKNTTKALRGHFAIAKVEPKRKIAEFRVDAENLINVGEEITADHYFEGQYV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GF G MKR F G+ ATHGV+ SHR G +V+ G
Sbjct: 110 DVSGTTIGKGFAGSMKRHNFGGLRATHGVSISHRSHGSTGQCQNPGKVFKG 160
>gi|212716611|ref|ZP_03324739.1| hypothetical protein BIFCAT_01540 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|225351045|ref|ZP_03742068.1| hypothetical protein BIFPSEUDO_02627 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|212660315|gb|EEB20890.1| hypothetical protein BIFCAT_01540 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|225158501|gb|EEG71743.1| hypothetical protein BIFPSEUDO_02627 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 213
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 80/173 (46%), Gaps = 13/173 (7%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
S RT L+GK +G +W +NG TLV V N ++ + EE G +L
Sbjct: 2 SNRTALLGKKLGMSQVWDENGFFVPVTLVDVSTN-VVTAVKSEESD-------GYKAVQL 53
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
G V DP+ TK G F +GV P++ L PG LTA F
Sbjct: 54 GYGQV-----DPTKVTKPLAGHFAKAGVTPRRHLAEVRTDNAEEFEPGQELTAELFPEGT 108
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G T +GF G +KRWGFK THG K+ RR G + + A +R+ G
Sbjct: 109 LVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKG 161
>gi|148554274|ref|YP_001261856.1| 50S ribosomal protein L3 [Sphingomonas wittichii RW1]
gi|148499464|gb|ABQ67718.1| LSU ribosomal protein L3P [Sphingomonas wittichii RW1]
Length = 317
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 13/169 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++ + + ++ R + +
Sbjct: 68 RTGVIAKKMGMTRLFQEDGRHVPVTVLALENVQVVAR-------------REQDRDGYVA 114
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA S P TK G F + V PK + F ++ D +L G ++A H+ +F+
Sbjct: 115 VQLGAGSAKPKNLTKPERGHFGKAEVEPKAFVAEFRVSEDGLLDVGAEISADHYVAGQFV 174
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
D++G T +GF G MKRWGF G+ ATHGV+ SHR G +V+
Sbjct: 175 DIQGSTQGKGFAGGMKRWGFGGLRATHGVSVSHRSLGSTGQRQDPGKVF 223
>gi|15965109|ref|NP_385462.1| 50S ribosomal protein L3 [Sinorhizobium meliloti 1021]
gi|334315895|ref|YP_004548514.1| 50S ribosomal protein L3 [Sinorhizobium meliloti AK83]
gi|384529067|ref|YP_005713155.1| 50S ribosomal protein L3 [Sinorhizobium meliloti BL225C]
gi|384536653|ref|YP_005720738.1| 50S ribosomal protein L3 [Sinorhizobium meliloti SM11]
gi|407720296|ref|YP_006839958.1| 50S ribosomal protein L3 [Sinorhizobium meliloti Rm41]
gi|433613127|ref|YP_007189925.1| 50S ribosomal protein L3, bacterial [Sinorhizobium meliloti GR4]
gi|42559675|sp|Q92QH0.1|RL3_RHIME RecName: Full=50S ribosomal protein L3
gi|15074289|emb|CAC45935.1| Probable 50S ribosomal protein L3 [Sinorhizobium meliloti 1021]
gi|333811243|gb|AEG03912.1| 50S ribosomal protein L3 [Sinorhizobium meliloti BL225C]
gi|334094889|gb|AEG52900.1| 50S ribosomal protein L3 [Sinorhizobium meliloti AK83]
gi|336033545|gb|AEH79477.1| 50S ribosomal protein L3 [Sinorhizobium meliloti SM11]
gi|407318528|emb|CCM67132.1| 50S ribosomal protein L3 [Sinorhizobium meliloti Rm41]
gi|429551317|gb|AGA06326.1| 50S ribosomal protein L3, bacterial [Sinorhizobium meliloti GR4]
Length = 228
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ +R E K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHIPVTVLRLENCQVV-------------SHRTEEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA K G F + V PK KL F ++ D ++ G LTA HF + +
Sbjct: 49 VQLGAGRSKVKNTPKAMRGHFAAASVEPKAKLVEFRVSADNLIDIGAELTAGHFVAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GF G +KR F G+ ATHGV+ SHR G S RV+ G
Sbjct: 109 DVTGTTIGKGFAGAIKRHNFGGLRATHGVSVSHRSHGSTGSNQDPGRVWKG 159
>gi|340030725|ref|ZP_08666788.1| 50S ribosomal protein L3 [Paracoccus sp. TRP]
Length = 246
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L++++G + T++ V + +I R K
Sbjct: 3 RTGVIAKKLGMTRLFLEDGRQVPVTVLHVDNVQVI-------------AQRTVEKDGYVA 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +GA T G F + V PK+K+ F ++P+ ++ G + A H+ P +++
Sbjct: 50 LQLGAGEAKAKRTTAALRGHFAKANVAPKRKIAEFRVSPENLVEVGEEIVADHYFPGQYV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D+ G ++ +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 110 DIAGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 160
>gi|171741273|ref|ZP_02917080.1| hypothetical protein BIFDEN_00348 [Bifidobacterium dentium ATCC
27678]
gi|283455366|ref|YP_003359930.1| 50S ribosomal protein L3 [Bifidobacterium dentium Bd1]
gi|306823568|ref|ZP_07456943.1| 50S ribosomal protein L3 [Bifidobacterium dentium ATCC 27679]
gi|309802910|ref|ZP_07697011.1| 50S ribosomal protein L3 [Bifidobacterium dentium JCVIHMP022]
gi|171276887|gb|EDT44548.1| 50S ribosomal protein L3 [Bifidobacterium dentium ATCC 27678]
gi|283102000|gb|ADB09106.1| rplC 50S ribosomal protein L3 [Bifidobacterium dentium Bd1]
gi|304553275|gb|EFM41187.1| 50S ribosomal protein L3 [Bifidobacterium dentium ATCC 27679]
gi|308220377|gb|EFO76688.1| 50S ribosomal protein L3 [Bifidobacterium dentium JCVIHMP022]
Length = 213
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 80/173 (46%), Gaps = 13/173 (7%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
S RT L+GK +G +W +NG TLV V N ++ + EE G +L
Sbjct: 2 SNRTALLGKKLGMSQVWDENGFFVPVTLVDVSTN-VVTAVKSEESD-------GYKAVQL 53
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
G V DP+ TK G F +GV P++ L PG LTA F
Sbjct: 54 GYGQV-----DPTKVTKPLAGHFAKAGVTPRRHLAEVRTDNAEEFEPGQELTAELFPEGT 108
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G T +GF G +KRWGFK THG K+ RR G + + A +R+ G
Sbjct: 109 LVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKG 161
>gi|84685437|ref|ZP_01013335.1| 50S ribosomal protein L3 [Maritimibacter alkaliphilus HTCC2654]
gi|84666594|gb|EAQ13066.1| 50S ribosomal protein L3 [Rhodobacterales bacterium HTCC2654]
Length = 290
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L++++G++ T++Q+ ++ R K
Sbjct: 3 RSGVIAKKVGMTRLFLEDGKQVPVTVLQLDGLQVV-------------AQRTTEKDGYTA 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA S +K G F + V PK+K+ F + + ++ G +TA H+ +F+
Sbjct: 50 VQLGAGSAKAKRTSKAMRGHFATANVAPKRKVAEFRVDAENLINVGEEITADHYFAGQFV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ A+HGV+ SHR G RV+ G
Sbjct: 110 DVSGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGRVFKG 160
>gi|254438817|ref|ZP_05052311.1| ribosomal protein L3 [Octadecabacter antarcticus 307]
gi|198254263|gb|EDY78577.1| ribosomal protein L3 [Octadecabacter antarcticus 307]
Length = 278
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+ ++G + T++Q+ ++ R K
Sbjct: 5 RSGIIAKKVGMTRLFQEDGRQIPVTVLQLDKLQVV-------------AQRTAEKDGYTA 51
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + + G F + V PK+K+C F ++ + ++P G + A+H+ +F+
Sbjct: 52 VQLGAGTAKAKRTSAPMRGHFAAAKVEPKRKVCEFRVSEENLIPVGEEIIASHYFEGQFV 111
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ ATHGV+ SHR G +V+ G
Sbjct: 112 DVSGTSIGKGFAGAMKRHNFSGLRATHGVSISHRSHGSTGQCQDPGKVFKG 162
>gi|126736644|ref|ZP_01752384.1| ribosomal protein L3 [Roseobacter sp. CCS2]
gi|126713957|gb|EBA10828.1| ribosomal protein L3 [Roseobacter sp. CCS2]
Length = 283
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTGLI K +G L+M++G++ T++ + + ++ R
Sbjct: 3 RTGLIAKKVGMTRLFMEDGKQIPVTVLSLENLQVV-------------AQRTADTNGYTA 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + +K G F + V PK+K+ F + P+ M+ G LTA H+ +++
Sbjct: 50 VQLGAGNAKAKRTSKAMRGHFAAAKVEPKRKVAEFRVAPENMINVGETLTANHYFEGQYV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ ATHGV+ SHR G +V+ G
Sbjct: 110 DVCGTSIGKGFAGAMKRHNFGGLRATHGVSISHRSHGSTGQCQDPGKVFKG 160
>gi|124487970|gb|ABN12068.1| mitochondrial ribosomal protein L3-llike protein [Maconellicoccus
hirsutus]
Length = 170
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 45/59 (76%)
Query: 223 TPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK 281
TPL A HF+ +++DVRGLT+ RGFQGVMKRWGF G PATHG TK+HRR G I G K
Sbjct: 1 TPLLAPHFKVGDYVDVRGLTIQRGFQGVMKRWGFHGQPATHGQTKTHRRPGTIGRGRDK 59
>gi|163745537|ref|ZP_02152897.1| ribosomal protein L3 [Oceanibulbus indolifex HEL-45]
gi|161382355|gb|EDQ06764.1| ribosomal protein L3 [Oceanibulbus indolifex HEL-45]
Length = 292
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++Q+ ++ + +R Y
Sbjct: 3 RSGVIAKKVGMTRLFMEDGKQIPVTVLQLDKLQVV-----AQRTADRDGYT--------A 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA S ++ G F + V PK+K+ F + +AML G + A H+ +++
Sbjct: 50 VQLGAGSAKAKRTSQAMRGHFAAAKVEPKRKVAEFRVDAEAMLEVGEEIIADHYFAGQYV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ ATHGV+ SHR G +V+ G
Sbjct: 110 DVAGTSIGKGFAGAMKRHNFGGLRATHGVSISHRSHGSTGQCQDPGKVFKG 160
>gi|154253177|ref|YP_001414001.1| 50S ribosomal protein L3 [Parvibaculum lavamentivorans DS-1]
gi|171769627|sp|A7HWR1.1|RL3_PARL1 RecName: Full=50S ribosomal protein L3
gi|154157127|gb|ABS64344.1| ribosomal protein L3 [Parvibaculum lavamentivorans DS-1]
Length = 251
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G T++++ + ++ R + K
Sbjct: 2 RSGVIVKKVGMTRLFMEDGRHVPVTVLKLDNCQVV-------------SQRTDEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G G F + V PK +L F ++PD +L G +TA HF +++
Sbjct: 49 VQLGTGRAKAKNVANAQRGQFARASVEPKLELVEFRVSPDNLLDVGVEITADHFIAGQYV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G+ ATHGV+ SHR G +V+ G
Sbjct: 109 DVSGTSIGKGFAGVMKRHNFGGLRATHGVSVSHRSHGSTGQNQDPGKVFKG 159
>gi|383771135|ref|YP_005450200.1| 50S ribosomal protein L3 [Bradyrhizobium sp. S23321]
gi|381359258|dbj|BAL76088.1| 50S ribosomal protein L3 [Bradyrhizobium sp. S23321]
Length = 237
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 16/165 (9%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ + R E K
Sbjct: 2 RSGVIAQKVGMTRVFTEAGEHIPVTVLKLGNCQVVGH-------------RTEEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G+ S K G F + V PK+++ F ++ DAM+P G + A HF +F+
Sbjct: 49 LQLGSGSRKTVYLPKAERGQFAVAKVEPKRQVEEFRVSADAMIPVGAEILADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK 281
DV G +V +GF G MKRW F G+ ATHGV+ SHR I S G+
Sbjct: 109 DVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHR---SIGSTGGR 150
>gi|414342980|ref|YP_006984501.1| RplC [Gluconobacter oxydans H24]
gi|411028315|gb|AFW01570.1| RplC [Gluconobacter oxydans H24]
gi|453330315|dbj|GAC87543.1| 50S ribosomal protein L3 [Gluconobacter thailandicus NBRC 3255]
Length = 227
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTGLI K +G L+ ++G T++ + + ++ E R Y
Sbjct: 2 RTGLIAKKLGMTRLFKEDGTHVPVTVLHLDEVQVVDSRTNE-----RDGYT--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G + TK G F + V PKK L F + DA+L GT L+A HF + +
Sbjct: 49 VQLGLGNAKVKNVTKANRGHFARTKVEPKKNLVEFRVAEDALLEAGTKLSANHFVVGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G + +GF GVMKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DVTGQSKGKGFAGVMKRHNFAGLEASHGVSISHRSHGSTGQRQDPGKVFKG 159
>gi|408785476|ref|ZP_11197221.1| 50S ribosomal protein L3 [Rhizobium lupini HPC(L)]
gi|424910714|ref|ZP_18334091.1| 50S ribosomal protein L3, bacterial [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392846745|gb|EJA99267.1| 50S ribosomal protein L3, bacterial [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|408488624|gb|EKJ96933.1| 50S ribosomal protein L3 [Rhizobium lupini HPC(L)]
Length = 213
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ R E K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHIPVTVLRLDNVQVV-------------AQRTEDKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA TK G F + V PK KL F ++P+ ++ G LTA HF+ + +
Sbjct: 49 VQLGAGQSKVKNTTKALRGHFAAANVEPKAKLVEFRVSPENLIDIGATLTANHFQTGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GF G MKR F G A+HG + SHR G S RV+ G
Sbjct: 109 DVTGTTIGKGFAGAMKRHNFGGGRASHGNSISHRAHGSTGSNQDPGRVWKG 159
>gi|393724012|ref|ZP_10343939.1| 50S ribosomal protein L3 [Sphingomonas sp. PAMC 26605]
Length = 251
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G + +G T++ + + ++ + +R Y
Sbjct: 2 RTGVIAKKMGMTRWFQDDGRHVPVTVLALENLQVVAV-----READRDGYV--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + K G F + V PK KL F ++ DA+L G ++A H+ + +
Sbjct: 49 VQLGAGTAKAKNVAKPQRGHFGKAEVEPKAKLAEFRVSDDAVLEVGATISADHYVSGQIV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
D++G+T +GFQG MKRWGF G+ ATHGV+ SHR G
Sbjct: 109 DIQGVTQGKGFQGGMKRWGFGGLRATHGVSVSHRSLGS 146
>gi|304391453|ref|ZP_07373395.1| 50S ribosomal protein L3 [Ahrensia sp. R2A130]
gi|303295682|gb|EFL90040.1| 50S ribosomal protein L3 [Ahrensia sp. R2A130]
Length = 277
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ G T++++ +I R E K
Sbjct: 2 RSGVIAQKVGMTRIYTDEGINVPVTVLRMEHVQVI-------------AQRTEEKHGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA +K G F + V PK+KL F +T + ++P G + AAH+ P +F+
Sbjct: 49 VQLGAGKAKVKNVSKPMRGHFAVAKVEPKRKLAEFRVTEENLVPVGAEIIAAHYMPGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DVTGTTIGKGFAGAMKRHNFGGLRASHGVSVSHRSHGSTGQCQDPGKVFKG 159
>gi|398822816|ref|ZP_10581191.1| 50S ribosomal protein L3, bacterial [Bradyrhizobium sp. YR681]
gi|398226522|gb|EJN12769.1| 50S ribosomal protein L3, bacterial [Bradyrhizobium sp. YR681]
Length = 237
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 16/165 (9%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ + R E K
Sbjct: 2 RSGVIAQKVGMTRVFTEAGEHIPVTVLKLGNCQVVGH-------------RTEEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G+ S K G F + V PK+++ F ++ DAM+P G + A HF +F+
Sbjct: 49 LQLGSGSRKTVYMPKAERGQFAVAKVEPKRQVEEFRVSADAMIPVGAEILADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK 281
DV G +V +GF G MKRW F G+ ATHGV+ SHR I S G+
Sbjct: 109 DVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR---SIGSTGGR 150
>gi|420241690|ref|ZP_14745800.1| 50S ribosomal protein L3, bacterial [Rhizobium sp. CF080]
gi|398069949|gb|EJL61274.1| 50S ribosomal protein L3, bacterial [Rhizobium sp. CF080]
Length = 213
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ R K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHVPVTVLRLENCQVV-------------AQRTVEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + TK G F + V PK KL F ++ D ++ GT LTA HF + +
Sbjct: 49 VQLGAGTAKVKNTTKALRGHFAVAEVEPKAKLVEFRVSEDNLIDVGTELTAGHFTAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ ATHGV+ SHR G + +V+ G
Sbjct: 109 DVTGTSIGKGFAGAMKRHNFGGLRATHGVSVSHRSHGSTGNNQDPGKVWKG 159
>gi|384218078|ref|YP_005609244.1| 50S ribosomal protein L3 [Bradyrhizobium japonicum USDA 6]
gi|354956977|dbj|BAL09656.1| 50S ribosomal protein L3 [Bradyrhizobium japonicum USDA 6]
Length = 237
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 16/165 (9%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ + R E K
Sbjct: 2 RSGVIAQKVGMTRVFTEAGEHIPVTVLKLGNCQVVGH-------------RTEEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G+ S K G F + V PK+++ F ++ DAM+P G + A HF +F+
Sbjct: 49 LQLGSGSRKTVYMPKAERGQFAVAKVEPKRQVEEFRVSADAMIPVGAEILADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK 281
DV G +V +GF G MKRW F G+ ATHGV+ SHR I S G+
Sbjct: 109 DVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR---SIGSTGGR 150
>gi|403213352|emb|CCK67854.1| hypothetical protein KNAG_0A01650 [Kazachstania naganishii CBS
8797]
Length = 290
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 15/173 (8%)
Query: 117 RTGLIGKIIGQYP-LWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLG 175
R G++ +I+G P L + GE+ T++QV + + + +E +
Sbjct: 74 RCGVLTQIVGMLPYLNSETGERMAATILQVNNVEVTAHRTLQE------------NGYIA 121
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFII-TPDAMLPPGTPLTAAHFRPRE 234
C VG + +++ G+F + V PK K+ F + D +LP GT L + F P
Sbjct: 122 CQ-VGYGTVRARKVSRQMLGVFAANLVNPKAKVVEFKVKNEDGLLPLGTVLKPSWFEPGA 180
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F+DVRG++ +GF GVMKR FKG+ A+HG + SHR GG R+ PG
Sbjct: 181 FVDVRGVSKGKGFAGVMKRHHFKGLGASHGTSLSHRHGGSYGQHQDPGRILPG 233
>gi|218463388|ref|ZP_03503479.1| 50S ribosomal protein L3 [Rhizobium etli Kim 5]
Length = 159
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 18/175 (10%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ ++ R K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHVPVTVLRMDGCQVV-------------ATRTVEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA +K G F + V PK KL F ++ D +L GT + A HF + +
Sbjct: 49 VQLGAGQAKVKNTSKAMRGNFAVANVEPKAKLAEFRVSEDNLLEIGTEIKAGHFAAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQ 291
DV G T+ +GF G MKR GF G+ ATHGV+ SHR G S R PG V Q
Sbjct: 109 DVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGS-----RQDPGKVFQ 158
>gi|150396207|ref|YP_001326674.1| 50S ribosomal protein L3 [Sinorhizobium medicae WSM419]
gi|166234597|sp|A6U859.1|RL3_SINMW RecName: Full=50S ribosomal protein L3
gi|150027722|gb|ABR59839.1| ribosomal protein L3 [Sinorhizobium medicae WSM419]
Length = 228
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ R E K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHIPVTVLRLENCQVV-------------AQRTEEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA K G F + V PK KL F ++ D ++ G+ LTA HF + +
Sbjct: 49 VQLGAGRSKVKNTPKAMRGHFAAASVEPKAKLVEFRVSADNLIDIGSELTAGHFVAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GF G +KR F G+ ATHGV+ SHR G S RV+ G
Sbjct: 109 DVTGTTIGKGFAGAIKRHNFGGLRATHGVSVSHRSHGSTGSNQDPGRVWKG 159
>gi|50555650|ref|XP_505233.1| YALI0F10076p [Yarrowia lipolytica]
gi|49651103|emb|CAG78040.1| YALI0F10076p [Yarrowia lipolytica CLIB122]
Length = 277
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSL--YTKEYCGLFKNSGVPPKKKLCRFII-TPDAMLPPG 222
++ E K + VG + +L K G F + V PK+ + F I D +LP
Sbjct: 84 HKTEEKHGYNAVQVGMGHRNKALQKMNKSKLGQFSAATVNPKQAVAEFRIRGKDGLLPIT 143
Query: 223 TPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKA 282
T +TA+HF+ +++DV+ + +GF GVMKR GF G+PA+HGV+ HR GG
Sbjct: 144 TEITASHFKVGQYVDVQATSKGKGFSGVMKRHGFSGLPASHGVSLKHRSGGTTGQNTDPG 203
Query: 283 RVYPG 287
RV+PG
Sbjct: 204 RVFPG 208
>gi|365896255|ref|ZP_09434337.1| 50S ribosomal subunit protein L3 [Bradyrhizobium sp. STM 3843]
gi|365422968|emb|CCE06879.1| 50S ribosomal subunit protein L3 [Bradyrhizobium sp. STM 3843]
Length = 238
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ + R + K
Sbjct: 2 RSGVIAQKVGMTRVFTEAGEHIPVTVLKLGNCQVVGH-------------RTKEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G+ S K G F + V PK+K+ F ++ DA++P G + A HF +F+
Sbjct: 49 LQLGSGSRKTVYLPKAERGQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G +V +GF G MKRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHRSIGS 146
>gi|300742057|ref|ZP_07072078.1| 50S ribosomal protein L3 [Rothia dentocariosa M567]
gi|311111973|ref|YP_003983195.1| 50S ribosomal protein L3 [Rothia dentocariosa ATCC 17931]
gi|300381242|gb|EFJ77804.1| 50S ribosomal protein L3 [Rothia dentocariosa M567]
gi|310943467|gb|ADP39761.1| 50S ribosomal protein L3 [Rothia dentocariosa ATCC 17931]
Length = 218
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G +G +W ++G+ T+V+ D+++I I +E +
Sbjct: 11 GLLGTKLGMTQVWDEDGKVVPVTVVKA-DSNVITQIRNQETDGYH------------AVQ 57
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+G S D TK G F+ +GV P++ L A G LT F P + +DV
Sbjct: 58 IGFGSIDSRKVTKPLAGHFEKAGVTPRRHLVELRTADAAEYSLGQELTVEMFEPGQKVDV 117
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T +GF GVMKR GFKG+ A+HG K+HR+ G I + ARV+ G
Sbjct: 118 VGKTKGKGFAGVMKRHGFKGVGASHGQHKNHRKPGSIGGASYPARVFKG 166
>gi|295688906|ref|YP_003592599.1| 50S ribosomal protein L3 [Caulobacter segnis ATCC 21756]
gi|295430809|gb|ADG09981.1| 50S ribosomal protein L3 [Caulobacter segnis ATCC 21756]
Length = 254
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
+T ++RTG++ K +G + + G+ T++ + + E
Sbjct: 1 MTLPTQRTGVLAKKLGMTRFFDEAGQHVPVTVLSLDGCQVTGVRTVE------------- 47
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
K L +GA + +K G F + V PK+ + F + +A++ G LTA HF
Sbjct: 48 KDGYTALQLGAGAKKAKNTSKALRGHFAKAAVEPKRVVAEFRVEENALIEVGAELTADHF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +D++G+TV +GF G MKRW F G+ ATHGV+ SHR G + R +PG
Sbjct: 108 VAGQKVDIQGVTVGKGFAGAMKRWNFGGLRATHGVSVSHRSHGSTGNRQDPGRTFPG 164
>gi|325293336|ref|YP_004279200.1| 50S ribosomal protein L3 [Agrobacterium sp. H13-3]
gi|418408669|ref|ZP_12981985.1| 50S ribosomal protein L3 [Agrobacterium tumefaciens 5A]
gi|325061189|gb|ADY64880.1| 50S ribosomal protein L3 [Agrobacterium sp. H13-3]
gi|358005583|gb|EHJ97909.1| 50S ribosomal protein L3 [Agrobacterium tumefaciens 5A]
Length = 213
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ R E K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHIPVTVLRMDNVQVV-------------SQRTEDKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA TK G F + V PK KL F ++P+ ++ G LTA HF+ + +
Sbjct: 49 VQLGAGQSKVKNTTKALRGHFAAANVEPKAKLVEFRVSPENLIDIGATLTATHFQAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GF G MKR F G A+HG + SHR G + RV+ G
Sbjct: 109 DVTGTTIGKGFAGAMKRHNFGGGRASHGNSVSHRAHGSTGNNQDPGRVWKG 159
>gi|374291052|ref|YP_005038087.1| 50S ribosomal protein L3 [Azospirillum lipoferum 4B]
gi|357422991|emb|CBS85834.1| 50S ribosomal subunit protein L3 [Azospirillum lipoferum 4B]
Length = 232
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 18/172 (10%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
+I + +G ++ +G+ T+++V ++ R E K + +
Sbjct: 1 MIAQKVGMTRVFTDDGQHVPVTVLKVDSCQVV-------------AVRTEEKDGYTAVQL 47
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
GA + K G F + V PK+KL F + DA++ G L+AAHF +++DV
Sbjct: 48 GAGAIKVKNVNKPERGHFAKARVEPKRKLVEFRVDADALIEVGAELSAAHFVAGQYVDVT 107
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQ 291
G ++ +GF G MKRW F G+ ATHGV+ SHR G + R PG V +
Sbjct: 108 GTSIGKGFAGAMKRWNFGGLRATHGVSVSHRSHGSTGN-----RQDPGKVFK 154
>gi|405376542|ref|ZP_11030496.1| 50S ribosomal protein L3, bacterial [Rhizobium sp. CF142]
gi|397326869|gb|EJJ31180.1| 50S ribosomal protein L3, bacterial [Rhizobium sp. CF142]
Length = 213
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 76/161 (47%), Gaps = 13/161 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ ++ R K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHVPVTVLRLEGCQVV-------------AQRTVEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +GA +K G F + V PK KL F ++ D +L GT L A HF + +
Sbjct: 49 LQLGAGQAKVKNTSKAMRGNFAVANVEPKAKLQEFRVSEDHLLDVGTELKAGHFAAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
DV G T+ +GF G MKR GF G+ ATHGV+ SHR G S
Sbjct: 109 DVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGS 149
>gi|365885436|ref|ZP_09424437.1| 50S ribosomal subunit protein L3 [Bradyrhizobium sp. ORS 375]
gi|365889688|ref|ZP_09428355.1| 50S ribosomal subunit protein L3 [Bradyrhizobium sp. STM 3809]
gi|367474529|ref|ZP_09474030.1| 50S ribosomal subunit protein L3 [Bradyrhizobium sp. ORS 285]
gi|365273166|emb|CCD86498.1| 50S ribosomal subunit protein L3 [Bradyrhizobium sp. ORS 285]
gi|365285916|emb|CCD96968.1| 50S ribosomal subunit protein L3 [Bradyrhizobium sp. ORS 375]
gi|365334553|emb|CCE00886.1| 50S ribosomal subunit protein L3 [Bradyrhizobium sp. STM 3809]
Length = 239
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 13/154 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ + R K
Sbjct: 2 RSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQVVGH-------------RTTEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G+ S K G F + V PK+KL F ++ D+++P G + A HF +F+
Sbjct: 49 LQLGSGSRKTVYMPKAERGQFAVAKVEPKRKLAEFRVSEDSLIPVGAEIQADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 109 DVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR 142
>gi|15889242|ref|NP_354923.1| 50S ribosomal protein L3 [Agrobacterium fabrum str. C58]
gi|335036155|ref|ZP_08529482.1| 50S ribosomal protein L3 [Agrobacterium sp. ATCC 31749]
gi|418299387|ref|ZP_12911221.1| 50S ribosomal protein L3 [Agrobacterium tumefaciens CCNWGS0286]
gi|42559664|sp|Q8UE18.1|RL3_AGRT5 RecName: Full=50S ribosomal protein L3
gi|15157069|gb|AAK87708.1| 50S ribosomal protein L3 [Agrobacterium fabrum str. C58]
gi|333792046|gb|EGL63416.1| 50S ribosomal protein L3 [Agrobacterium sp. ATCC 31749]
gi|355535188|gb|EHH04478.1| 50S ribosomal protein L3 [Agrobacterium tumefaciens CCNWGS0286]
Length = 213
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ R E K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHIPVTVLRLDNVQVV-------------AQRTEDKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA TK G F + V PK KL F ++P+ ++ G LTA HF+ + +
Sbjct: 49 VQLGAGQSKVKNTTKALRGHFAAANVEPKAKLVEFRVSPENLIDIGATLTANHFQSGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GF G MKR F G A+HG + SHR G + RV+ G
Sbjct: 109 DVTGTTIGKGFAGAMKRHNFGGGRASHGNSVSHRAHGSTGNNQDPGRVWKG 159
>gi|148256392|ref|YP_001240977.1| 50S ribosomal protein L3 [Bradyrhizobium sp. BTAi1]
gi|166233120|sp|A5ELM7.1|RL3_BRASB RecName: Full=50S ribosomal protein L3
gi|146408565|gb|ABQ37071.1| LSU ribosomal protein L3P [Bradyrhizobium sp. BTAi1]
Length = 239
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 81/158 (51%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ + R K
Sbjct: 2 RSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQVVGH-------------RTTEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G+ S K G F + V PK+K+ F ++ D+++P G + A HF +F+
Sbjct: 49 LQLGSGSRKTVYMPKAERGQFAVAKVEPKRKVAEFRVSEDSLIPVGAEILADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G TV +GF G MKRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTTVGKGFAGGMKRWNFGGLRATHGVSISHRSIGS 146
>gi|221234243|ref|YP_002516679.1| 50S ribosomal protein L3 [Caulobacter crescentus NA1000]
gi|13422579|gb|AAK23229.1| ribosomal protein L3 [Caulobacter crescentus CB15]
gi|220963415|gb|ACL94771.1| LSU ribosomal protein L3P [Caulobacter crescentus NA1000]
Length = 267
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 13/178 (7%)
Query: 110 EITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGE 169
+T ++RTG+I K +G + + G+ T++ + + E
Sbjct: 12 SMTLPTQRTGVIAKKLGMTRFFDEAGQHVPVTVLSLDGCQVTGVRTVE------------ 59
Query: 170 PKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAH 229
K L +GA + + G F + V PK+ + F + +A++ G LTA H
Sbjct: 60 -KDGYTALQLGAGAKKAKNTSNAMRGHFAKAAVEPKRVVAEFRVEENALIEVGAELTADH 118
Query: 230 FRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F + +D++G+TV +GF G MKRW F G+ ATHGV+ SHR G + R +PG
Sbjct: 119 FVAGQKVDIQGVTVGKGFAGAMKRWNFGGLRATHGVSVSHRSHGSTGNRQDPGRTFPG 176
>gi|110678718|ref|YP_681725.1| 50S ribosomal protein L3 [Roseobacter denitrificans OCh 114]
gi|123362126|sp|Q16AF4.1|RL3_ROSDO RecName: Full=50S ribosomal protein L3
gi|109454834|gb|ABG31039.1| ribosomal protein L3 [Roseobacter denitrificans OCh 114]
Length = 286
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++Q+ ++ R K
Sbjct: 3 RSGVIAKKVGMTRLFMEDGKQIPVTVLQLDKLQVV-------------AQRTSEKDGYSA 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + ++ G F + V PK+K+ F + P+ ++ G +TA H+ +F+
Sbjct: 50 VQLGAGTAKAKRTSQAMRGHFAAAKVEPKRKVAEFRVDPENLIGVGEEITANHYFEGQFV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 110 DVAGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 160
>gi|146340057|ref|YP_001205105.1| 50S ribosomal protein L3 [Bradyrhizobium sp. ORS 278]
gi|166233121|sp|A4YSJ2.1|RL3_BRASO RecName: Full=50S ribosomal protein L3
gi|146192863|emb|CAL76868.1| 50S ribosomal subunit protein L3 [Bradyrhizobium sp. ORS 278]
Length = 239
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 13/154 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ + R K
Sbjct: 2 RSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQVVGH-------------RTTEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G+ S K G F + V PK+KL F ++ D+++P G + A HF +F+
Sbjct: 49 LQLGSGSRKTVYMPKAERGQFAVAKVEPKRKLAEFRVSEDSLIPVGAEIQADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 109 DVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR 142
>gi|260432429|ref|ZP_05786400.1| 50S ribosomal protein L3 [Silicibacter lacuscaerulensis ITI-1157]
gi|260416257|gb|EEX09516.1| 50S ribosomal protein L3 [Silicibacter lacuscaerulensis ITI-1157]
Length = 242
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G + T++ + + ++ R K
Sbjct: 3 RSGIIAKKVGMTRLFMEDGRQIPVTVLHLDNLQVV-------------AQRTADKDGYTA 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + +K G F + V PK+KL F ++ DA++ G ++A HF + +
Sbjct: 50 VQLGAGAAKAKRTSKAMRGHFAAAKVEPKRKLAEFRVSEDALIEVGAEISADHFVEGQKV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 110 DVSGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 160
>gi|161485649|ref|NP_420061.2| 50S ribosomal protein L3 [Caulobacter crescentus CB15]
gi|42559686|sp|Q9A8V3.2|RL3_CAUCR RecName: Full=50S ribosomal protein L3
Length = 255
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
+T ++RTG+I K +G + + G+ T++ + + E
Sbjct: 1 MTLPTQRTGVIAKKLGMTRFFDEAGQHVPVTVLSLDGCQVTGVRTVE------------- 47
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
K L +GA + + G F + V PK+ + F + +A++ G LTA HF
Sbjct: 48 KDGYTALQLGAGAKKAKNTSNAMRGHFAKAAVEPKRVVAEFRVEENALIEVGAELTADHF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +D++G+TV +GF G MKRW F G+ ATHGV+ SHR G + R +PG
Sbjct: 108 VAGQKVDIQGVTVGKGFAGAMKRWNFGGLRATHGVSVSHRSHGSTGNRQDPGRTFPG 164
>gi|115525585|ref|YP_782496.1| 50S ribosomal protein L3 [Rhodopseudomonas palustris BisA53]
gi|122295408|sp|Q07KL8.1|RL3_RHOP5 RecName: Full=50S ribosomal protein L3
gi|115519532|gb|ABJ07516.1| LSU ribosomal protein L3P [Rhodopseudomonas palustris BisA53]
Length = 240
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 13/154 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ + R K
Sbjct: 2 RSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQVLGH-------------RTSEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G+ S K G F + V PK+K+ F ++ D+M+P G + A HF +F+
Sbjct: 49 LQLGSGSRKTVYMPKAERGQFAAAKVEPKRKVAEFRVSEDSMIPIGAEIQADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
DV G +V +GF G +KRW F G+ ATHGV+ SHR
Sbjct: 109 DVTGTSVGKGFAGGIKRWNFGGLRATHGVSVSHR 142
>gi|407800498|ref|ZP_11147358.1| 50S ribosomal protein L3 [Oceaniovalibus guishaninsula JLT2003]
gi|407057417|gb|EKE43393.1| 50S ribosomal protein L3 [Oceaniovalibus guishaninsula JLT2003]
Length = 291
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G ++ ++G + T++Q+ ++ PE
Sbjct: 3 RSGVIAKKVGMTRIFQEDGRQIPVTVLQLDTLQVVAQRTPEA-------------HGYAA 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + +K G F + V PK+K+ F + P+ ++ G +TA H+ +F+
Sbjct: 50 VQLGAGTAKAKNTSKAMRGHFAVANVAPKRKIAEFRVAPENLIAVGEEITANHYFEGQFV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 110 DVSGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 160
>gi|456356078|dbj|BAM90523.1| 50S ribosomal subunit protein L3 [Agromonas oligotrophica S58]
Length = 239
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 13/154 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ + R K
Sbjct: 2 RSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQVVGH-------------RTTEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G+ S K G F + V PK+KL F ++ D+++P G + A HF +F+
Sbjct: 49 LQLGSGSRKTVYMPKAERGQFAVAKVEPKRKLAEFRVSEDSLIPVGAEILADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 109 DVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHR 142
>gi|190891355|ref|YP_001977897.1| 50S ribosomal protein L3 [Rhizobium etli CIAT 652]
gi|417103118|ref|ZP_11960976.1| 50S ribosomal protein L3 [Rhizobium etli CNPAF512]
gi|226730554|sp|B3PWS1.1|RL3_RHIE6 RecName: Full=50S ribosomal protein L3
gi|190696634|gb|ACE90719.1| 50S ribosomal protein L3 [Rhizobium etli CIAT 652]
gi|327191386|gb|EGE58412.1| 50S ribosomal protein L3 [Rhizobium etli CNPAF512]
Length = 213
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 13/161 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ ++ R K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHVPVTVLRMDGCQVV-------------ATRTVEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA +K G F + V PK KL F ++ D +L GT L A HF + +
Sbjct: 49 VQLGAGQAKVKNTSKAMRGNFAVANVEPKAKLAEFRVSEDNLLEIGTELKAGHFAAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
DV G T+ +GF G MKR GF G+ ATHGV+ SHR G S
Sbjct: 109 DVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGS 149
>gi|89053074|ref|YP_508525.1| 50S ribosomal protein L3 [Jannaschia sp. CCS1]
gi|109893433|sp|Q28UW2.1|RL3_JANSC RecName: Full=50S ribosomal protein L3
gi|88862623|gb|ABD53500.1| LSU ribosomal protein L3P [Jannaschia sp. CCS1]
Length = 290
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++Q+ ++ +
Sbjct: 3 RSGVIAKKVGMTRLFMEDGKQIPVTVLQLDKLQVV-------------AKKTSDSDGYSA 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + + G+F + V PK+KL F + D ++ G + A H+ +F+
Sbjct: 50 VQLGAGTAKAKRTSAPMRGVFAKASVEPKRKLVEFRVDADNLIEVGEEIIADHYFEGQFV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GFQG MKR F G+ A+HGV+ SHR G RV+ G
Sbjct: 110 DVTGTSIGKGFQGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGRVFKG 160
>gi|162149174|ref|YP_001603635.1| 50S ribosomal protein L3 [Gluconacetobacter diazotrophicus PAl 5]
gi|209545082|ref|YP_002277311.1| 50S ribosomal protein L3 [Gluconacetobacter diazotrophicus PAl 5]
gi|189042847|sp|A9H3R5.1|RL3_GLUDA RecName: Full=50S ribosomal protein L3
gi|161787751|emb|CAP57347.1| 50S ribosomal protein L3 [Gluconacetobacter diazotrophicus PAl 5]
gi|209532759|gb|ACI52696.1| ribosomal protein L3 [Gluconacetobacter diazotrophicus PAl 5]
Length = 227
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTGLI K +G L+ ++G T++ V + ++ R + +
Sbjct: 2 RTGLIAKKLGMTRLFKEDGTHVPVTVLHVDNLQVV-------------DVRTQDRDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G + +K G F V PKKKL F + DA+L G L+AAHF + +
Sbjct: 49 VQLGFGNAKVKNVSKPNRGHFARVKVEPKKKLAEFRVADDAVLEAGATLSAAHFVVGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV + +GF G MKRW F G+ A+HGV+ SHR G
Sbjct: 109 DVTSTSKGKGFAGAMKRWNFAGLEASHGVSISHRSHGS 146
>gi|294654997|ref|XP_002770064.1| mitochondrial 54S ribosomal protein YmL9 [Debaryomyces hansenii
CBS767]
gi|199429613|emb|CAG85072.4| DEHA2B02684p [Debaryomyces hansenii CBS767]
Length = 278
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 197 FKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWG 255
F+ +GV PKK + F I ++ ++P GT LTA +F + +DV+ +T +GF GVMKR G
Sbjct: 127 FQEAGVSPKKHIGEFRIRDESGLIPVGTELTADYFAVGQLVDVKAITKGKGFAGVMKRHG 186
Query: 256 FKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
FKG+ A+HGV+K+HR G + + RV PG
Sbjct: 187 FKGLKASHGVSKAHRSAGSMGATQTPGRVLPG 218
>gi|330819132|ref|XP_003291618.1| hypothetical protein DICPUDRAFT_39301 [Dictyostelium purpureum]
gi|325078183|gb|EGC31848.1| hypothetical protein DICPUDRAFT_39301 [Dictyostelium purpureum]
Length = 340
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 15/175 (8%)
Query: 112 TTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPK 171
T ++ R G IGK +G ++ E T++Q+ +N + + RK G
Sbjct: 53 TIATTRMGAIGKKVGMMTTYI-GAEAYPVTVIQIPNNQVTQV--------KRKIKDGA-- 101
Query: 172 RKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAM-LPPGTPLTAAHF 230
+ +GA+ K G F + V PK+ L F +T +A+ + GTP+ A HF
Sbjct: 102 ---NMVQIGADEIRMKNVPKPLRGHFAKANVTPKRILMEFKVTNNALNIDLGTPILARHF 158
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
P + + V+G + +GF G MKRW F+G PATHGV+ +HR G + RV+
Sbjct: 159 VPGQLVTVKGKSSGKGFAGGMKRWNFRGQPATHGVSLTHRSIGATGNRQTPGRVF 213
>gi|410943570|ref|ZP_11375311.1| 50S ribosomal protein L3 [Gluconobacter frateurii NBRC 101659]
Length = 227
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTGLI K +G L+ ++G T++ + + ++ E R Y
Sbjct: 2 RTGLIAKKLGMTRLFKEDGTHVPVTVLHLDEVQVVDARTNE-----RDGYT--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G + TK G F + V PKK L F + DA+L GT L+A HF + +
Sbjct: 49 VQLGLGNAKVKNVTKANRGHFARTKVEPKKTLVEFRVAEDALLEAGTKLSANHFVVGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G + +GF GVMKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DVTGQSKGKGFAGVMKRHNFAGLEASHGVSISHRSHGSTGQRQDPGKVFKG 159
>gi|39936313|ref|NP_948589.1| 50S ribosomal protein L3 [Rhodopseudomonas palustris CGA009]
gi|192292037|ref|YP_001992642.1| 50S ribosomal protein L3 [Rhodopseudomonas palustris TIE-1]
gi|316933527|ref|YP_004108509.1| 50S ribosomal protein L3 [Rhodopseudomonas palustris DX-1]
gi|42559577|sp|P60456.1|RL3_RHOPA RecName: Full=50S ribosomal protein L3; AltName: Full=RRP-L3
gi|226730557|sp|B3QBY0.1|RL3_RHOPT RecName: Full=50S ribosomal protein L3
gi|39650168|emb|CAE28691.1| 50S ribosomal protein L3 [Rhodopseudomonas palustris CGA009]
gi|192285786|gb|ACF02167.1| ribosomal protein L3 [Rhodopseudomonas palustris TIE-1]
gi|315601241|gb|ADU43776.1| 50S ribosomal protein L3 [Rhodopseudomonas palustris DX-1]
Length = 241
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 16/165 (9%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ +R + K
Sbjct: 2 RSGVIAQKVGMTRVFTEAGEHIPVTVLKLGNCQVL-------------GHRTKEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L VG+ S K G F + V PK+K+ F ++ DA+LP G + A HF +F+
Sbjct: 49 LQVGSGSRKTVYMPKAERGQFAAAKVEPKRKVEEFRVSEDALLPVGAEIQADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK 281
DV G + +GF G MKRW F G+ ATHGV+ SHR I S G+
Sbjct: 109 DVTGTSTGKGFAGGMKRWNFGGLRATHGVSVSHR---SIGSTGGR 150
>gi|406925480|gb|EKD61944.1| hypothetical protein ACD_54C00012G0003 [uncultured bacterium]
Length = 238
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+++NG + T++Q+ + ++ R K
Sbjct: 2 RSGVIAKKLGMTRLFLENGTQVPVTVLQLDNLQVV-------------AQRTVDKDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA T G F + V PK+K+ F ++P ++ G +TA H+ +F+
Sbjct: 49 VQLGAGLAKAKRTTAAMRGHFAKAQVEPKRKIAEFRVSPANLIEVGAEITADHYLAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D+ G T +GFQG MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DIAGTTNGKGFQGAMKRHNFGGLRASHGVSVSHRSHGSTGQCQDPGKVFKG 159
>gi|86749415|ref|YP_485911.1| 50S ribosomal protein L3 [Rhodopseudomonas palustris HaA2]
gi|109893547|sp|Q2IXR0.1|RL3_RHOP2 RecName: Full=50S ribosomal protein L3
gi|86572443|gb|ABD07000.1| LSU ribosomal protein L3P [Rhodopseudomonas palustris HaA2]
Length = 241
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ +R K
Sbjct: 2 RSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQVL-------------AHRTTEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G+ + K G F + V PK+K+ F ++ DA++P G + A HF +F+
Sbjct: 49 LQLGSGARKTVYMPKAERGQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G +V +GF G MKRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHRSIGS 146
>gi|156848338|ref|XP_001647051.1| hypothetical protein Kpol_1050p50 [Vanderwaltozyma polyspora DSM
70294]
gi|156117734|gb|EDO19193.1| hypothetical protein Kpol_1050p50 [Vanderwaltozyma polyspora DSM
70294]
Length = 271
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 97/203 (47%), Gaps = 15/203 (7%)
Query: 87 APAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKN-GEKCRTTLVQV 145
AP+V I+ +K P Q S R G+I + G P + +N GE+ T++Q+
Sbjct: 25 APSVVETIKLDPPIIKHSPEQAQSRRWSPLRCGVIAQKKGMMPYFDENTGERTAATVLQL 84
Query: 146 VDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPK 205
+ ++ + R VG DPS +++ G F + V PK
Sbjct: 85 NNVEVLMH-------------RTLKDNGYYACQVGFGDKDPSHVSRQMLGHFASKIVNPK 131
Query: 206 KKLCRFIITPDA-MLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHG 264
+ + F + ++ +LP GT L + F+P +F+D++ + +GFQGVMKR+ F G+ A+HG
Sbjct: 132 ETVAEFRVKNESGLLPLGTLLKPSFFKPGQFVDLKSTSKGKGFQGVMKRFHFAGLRASHG 191
Query: 265 VTKSHRRGGCIASGAGKARVYPG 287
+ HR GG R+ PG
Sbjct: 192 TSVMHRHGGSFGQNQDPGRILPG 214
>gi|254488658|ref|ZP_05101863.1| ribosomal protein L3 [Roseobacter sp. GAI101]
gi|214045527|gb|EEB86165.1| ribosomal protein L3 [Roseobacter sp. GAI101]
Length = 294
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++Q+ ++ E R Y
Sbjct: 3 RSGVIAKKMGMTRLFMEDGKQIPVTVLQLDKLQVVAQRTTE-----RDGYT--------A 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + + G F + V PK+K+ F + P+AML G + A H+ +++
Sbjct: 50 VQLGAGTAKVKRTSAPMRGHFAAAKVEPKRKVAEFRVDPEAMLNVGEEIIADHYFAGQYV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ ATHGV+ SHR G +V+ G
Sbjct: 110 DVAGTSIGKGFAGAMKRHNFGGLRATHGVSVSHRSHGSTGQCQDPGKVFKG 160
>gi|399060855|ref|ZP_10745809.1| 50S ribosomal protein L3, bacterial [Novosphingobium sp. AP12]
gi|398036991|gb|EJL30196.1| 50S ribosomal protein L3, bacterial [Novosphingobium sp. AP12]
Length = 251
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 83/175 (47%), Gaps = 18/175 (10%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++ + ++ +R Y
Sbjct: 2 RTGVIAKKVGMTRLFQEDGRHVPVTVLALEGCQVVSV-----RTSDRDGYV--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA K F + V K ++ F + DA+L G+ + A+HF P + +
Sbjct: 49 VQLGAGEAKQKNVAKPQREHFAKAEVSLKMRVAEFRVADDALLEVGSTIAASHFVPGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQ 291
DV G T +GFQG MKRWGF GM ATHGV+ SHR A G+ R PG V +
Sbjct: 109 DVGGHTQGKGFQGAMKRWGFGGMRATHGVSISHR-----AHGSTGQRQDPGKVFK 158
>gi|401625581|gb|EJS43581.1| mrpl9p [Saccharomyces arboricola H-6]
Length = 269
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 97/203 (47%), Gaps = 15/203 (7%)
Query: 87 APAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKN-GEKCRTTLVQV 145
AP++ + I T P+ P KR GLI + G P + ++ GE+ T+++V
Sbjct: 28 APSIANSITTEAPPINHSPELANARKWLPKRCGLITRKKGMMPYFDQSTGERTAATILEV 87
Query: 146 VDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPK 205
+ ++ + E C VG S S +++ G F + V PK
Sbjct: 88 NNVEVLMHRTLEA------------NGYFACQ-VGYGSKHLSKVSRQMLGHFASKVVNPK 134
Query: 206 KKLCRFIITPD-AMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHG 264
+ + F + + +LPPG+ L + F+ +++DVR + +GF GVMKR+GFKG+ A+HG
Sbjct: 135 EYVTEFRVKDEKGLLPPGSLLKPSFFKEGQYVDVRSTSKGKGFTGVMKRYGFKGLRASHG 194
Query: 265 VTKSHRRGGCIASGAGKARVYPG 287
+ HR GG RV PG
Sbjct: 195 TSIMHRHGGSYGQNQDPGRVLPG 217
>gi|308235496|ref|ZP_07666233.1| 50S ribosomal protein L3 [Gardnerella vaginalis ATCC 14018 = JCM
11026]
gi|311115167|ref|YP_003986388.1| 50S ribosomal protein L3 [Gardnerella vaginalis ATCC 14019]
gi|385801209|ref|YP_005837612.1| 50S ribosomal protein L3 [Gardnerella vaginalis HMP9231]
gi|415703879|ref|ZP_11459630.1| 50S ribosomal protein L3 [Gardnerella vaginalis 284V]
gi|415705944|ref|ZP_11461083.1| 50S ribosomal protein L3 [Gardnerella vaginalis 0288E]
gi|415712837|ref|ZP_11464995.1| 50S ribosomal protein L3 [Gardnerella vaginalis 55152]
gi|415715251|ref|ZP_11465805.1| 50S ribosomal protein L3 [Gardnerella vaginalis 1400E]
gi|415721805|ref|ZP_11468738.1| 50S ribosomal protein L3 [Gardnerella vaginalis 00703Bmash]
gi|415725189|ref|ZP_11470192.1| 50S ribosomal protein L3 [Gardnerella vaginalis 00703C2mash]
gi|417557052|ref|ZP_12208104.1| 50S ribosomal protein L3 [Gardnerella vaginalis 315-A]
gi|310946661|gb|ADP39365.1| 50S ribosomal protein L3 [Gardnerella vaginalis ATCC 14019]
gi|333393969|gb|AEF31887.1| 50S ribosomal protein L3 [Gardnerella vaginalis HMP9231]
gi|333601693|gb|EGL13133.1| 50S ribosomal protein L3 [Gardnerella vaginalis 315-A]
gi|388051185|gb|EIK74210.1| 50S ribosomal protein L3 [Gardnerella vaginalis 284V]
gi|388055369|gb|EIK78282.1| 50S ribosomal protein L3 [Gardnerella vaginalis 0288E]
gi|388056734|gb|EIK79593.1| 50S ribosomal protein L3 [Gardnerella vaginalis 55152]
gi|388058642|gb|EIK81430.1| 50S ribosomal protein L3 [Gardnerella vaginalis 1400E]
gi|388060510|gb|EIK83202.1| 50S ribosomal protein L3 [Gardnerella vaginalis 00703Bmash]
gi|388061994|gb|EIK84630.1| 50S ribosomal protein L3 [Gardnerella vaginalis 00703C2mash]
Length = 216
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 84/177 (47%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
++ + RT L+G+ +G +W +NG TLV+V N ++ + EE G
Sbjct: 1 MSQNKNRTALLGRKLGMSQVWDENGLFVPVTLVEVATN-VVTAVKTEETD-------GYC 52
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
+LG + DP+ TK G F +GV P++ L A PG LTA F
Sbjct: 53 AVQLGYGQI-----DPTKVTKPLAGHFAKAGVTPRRHLAEVRTENAADYKPGQELTAEVF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G T +GF G +KRWGFK THG K+ RR G + + A +R+ G
Sbjct: 108 AEGAEVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKG 164
>gi|209884813|ref|YP_002288670.1| 50S ribosomal protein L3 [Oligotropha carboxidovorans OM5]
gi|337741543|ref|YP_004633271.1| 50S ribosomal protein L3 [Oligotropha carboxidovorans OM5]
gi|386030559|ref|YP_005951334.1| 50S ribosomal protein L3 [Oligotropha carboxidovorans OM4]
gi|226730542|sp|B6JET3.1|RL3_OLICO RecName: Full=50S ribosomal protein L3
gi|209873009|gb|ACI92805.1| ribosomal protein L3 [Oligotropha carboxidovorans OM5]
gi|336095627|gb|AEI03453.1| 50S ribosomal protein L3 [Oligotropha carboxidovorans OM4]
gi|336099207|gb|AEI07030.1| 50S ribosomal protein L3 [Oligotropha carboxidovorans OM5]
Length = 243
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 81/154 (52%), Gaps = 13/154 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ +R + K
Sbjct: 2 RSGVIAQKVGMMRVFTEAGEHIPVTVLKLGNCQVV-------------GHRTKDKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +GA + K G F + V PK+K+ F ++ DA++P G + A HF +F+
Sbjct: 49 LQLGAGARKSVYMPKAERGQFAVAKVEPKRKVAEFRVSEDAIIPVGAEIQADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
DV G ++ +G+ G MKRW F G+ ATHGV+ SHR
Sbjct: 109 DVTGTSIGKGYAGGMKRWNFGGLRATHGVSVSHR 142
>gi|302307337|ref|NP_983967.2| mitochondrial 54S ribosomal protein YmL9 [Ashbya gossypii ATCC
10895]
gi|299788953|gb|AAS51791.2| ADL129Wp [Ashbya gossypii ATCC 10895]
gi|374107181|gb|AEY96089.1| FADL129Wp [Ashbya gossypii FDAG1]
Length = 267
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRF-IITPDAMLPPGTPLTAAHFRPREFLD 237
VG + PS T++ G F + V PK+K+ F + + +LP GT L + F P +++D
Sbjct: 101 VGYGNKHPSKVTRQLLGHFASKEVNPKEKVTEFRVKNEEGLLPVGTLLKPSFFSPGQYVD 160
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+R ++ +GFQGVMKR+ FKG A+HG + SHR+GG R+ PG
Sbjct: 161 LRSVSKGKGFQGVMKRYNFKGQKASHGNSLSHRKGGSYGQNQTPGRILPG 210
>gi|415704819|ref|ZP_11460090.1| 50S ribosomal protein L3 [Gardnerella vaginalis 75712]
gi|388051541|gb|EIK74565.1| 50S ribosomal protein L3 [Gardnerella vaginalis 75712]
Length = 216
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 84/177 (47%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
++ + RT L+G+ +G +W +NG TLV+V N ++ + EE G
Sbjct: 1 MSQNKNRTALLGRKLGMSQVWDENGLFVPVTLVEVATN-VVTAVKTEETD-------GYC 52
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
+LG + DP+ TK G F +GV P++ L A PG LTA F
Sbjct: 53 AVQLGYGQI-----DPTKVTKPLAGHFAKAGVTPRRHLAEVRTENAADYNPGQELTAEVF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G T +GF G +KRWGFK THG K+ RR G + + A +R+ G
Sbjct: 108 AEGAEVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKG 164
>gi|424890779|ref|ZP_18314378.1| 50S ribosomal protein L3, bacterial [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393172997|gb|EJC73042.1| 50S ribosomal protein L3, bacterial [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 213
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 13/161 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ ++ R K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHVPVTVLRMEAVQVV-------------ATRTVEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA +K G F + V PK KL F ++ D +L GT L A HF + +
Sbjct: 49 VQLGAGQAKVKNTSKAMRGNFAVANVEPKAKLQEFRVSEDNLLEIGTELKAGHFAAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
DV G T+ +GF G MKR GF G+ ATHGV+ SHR G S
Sbjct: 109 DVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGS 149
>gi|86357305|ref|YP_469197.1| 50S ribosomal protein L3 [Rhizobium etli CFN 42]
gi|109893545|sp|Q2K9L6.1|RL3_RHIEC RecName: Full=50S ribosomal protein L3
gi|86281407|gb|ABC90470.1| 50S ribosomal protein L3 [Rhizobium etli CFN 42]
Length = 213
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 13/161 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ ++ R K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHVPVTVLRMDGCQVV-------------ATRTVEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA +K G F + V PK KL F ++ D +L GT L A HF + +
Sbjct: 49 VQLGAGQAKVKNTSKAMRGNFAVANVEPKAKLAEFRVSEDNLLEIGTELKADHFAAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
DV G T+ +GF G MKR GF G+ ATHGV+ SHR G S
Sbjct: 109 DVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGS 149
>gi|126724861|ref|ZP_01740704.1| 50S ribosomal protein L3 [Rhodobacterales bacterium HTCC2150]
gi|126706025|gb|EBA05115.1| 50S ribosomal protein L3 [Rhodobacteraceae bacterium HTCC2150]
Length = 244
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G + T++Q+ + ++ E R Y +LG
Sbjct: 2 RSGVIAKKVGMTRLFMEDGRQVPVTVLQLDNLQVVSQRTAE-----RDGY---TAVQLGT 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L A+ ++ G F + V PK+K+ F + P+ M+ G +TA H+ + +
Sbjct: 54 GLAKAKRTSQAMR-----GHFAAAKVEPKRKVAEFRVAPENMINVGEEITADHYFEGQIV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ ATHGV+ SHR G +V+ G
Sbjct: 109 DVSGTSIGKGFAGAMKRHNFGGLRATHGVSISHRSHGSTGQCQDPGKVFKG 159
>gi|410076534|ref|XP_003955849.1| hypothetical protein KAFR_0B04180 [Kazachstania africana CBS 2517]
gi|372462432|emb|CCF56714.1| hypothetical protein KAFR_0B04180 [Kazachstania africana CBS 2517]
Length = 273
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 15/203 (7%)
Query: 87 APAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMK-NGEKCRTTLVQV 145
AP++ + I+ +N + P Q R G++ IG P + GE+ T++++
Sbjct: 32 APSIANSIQMHNPKINHSPEQAHNRKWLPARCGILTTKIGMLPFFNDVTGERLAATILKL 91
Query: 146 VDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPK 205
+ +I R + + VG + +P T++ G + V PK
Sbjct: 92 DNVEVILN-------------RTMNENGYFAVQVGYGNKNPQKVTRQLLGHYATHLVNPK 138
Query: 206 KKLCRFIITPDA-MLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHG 264
K F + + +L PGT + F+ +F+D+R ++ +GF GVMK++GFKG+ A+HG
Sbjct: 139 LKSAEFRVKDEGGLLEPGTTFKPSFFKVGDFVDIRSISKGKGFAGVMKKYGFKGLRASHG 198
Query: 265 VTKSHRRGGCIASGAGKARVYPG 287
+ HR GG RV PG
Sbjct: 199 TSLMHRHGGSYGQNQDPGRVLPG 221
>gi|338975039|ref|ZP_08630394.1| LSU ribosomal protein L3p [Bradyrhizobiaceae bacterium SG-6C]
gi|414167351|ref|ZP_11423580.1| 50S ribosomal protein L3 [Afipia clevelandensis ATCC 49720]
gi|338231638|gb|EGP06773.1| LSU ribosomal protein L3p [Bradyrhizobiaceae bacterium SG-6C]
gi|410891168|gb|EKS38966.1| 50S ribosomal protein L3 [Afipia clevelandensis ATCC 49720]
Length = 241
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 16/165 (9%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ +R K
Sbjct: 2 RSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQVV-------------GHRTTEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G+ S K G F + V PK+K+ F ++ D+++P G + A HF +F+
Sbjct: 49 LQLGSGSRKSVYLPKAERGQFAVAKVEPKRKVAEFRVSEDSLIPVGAEIQADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK 281
DV G +V +GF G MKRW F G+ ATHGV+ SHR I S G+
Sbjct: 109 DVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHR---SIGSTGGR 150
>gi|114797091|ref|YP_761529.1| 50S ribosomal protein L3 [Hyphomonas neptunium ATCC 15444]
gi|123322946|sp|Q0BYB4.1|RL3_HYPNA RecName: Full=50S ribosomal protein L3
gi|114737265|gb|ABI75390.1| ribosomal protein L3 [Hyphomonas neptunium ATCC 15444]
Length = 252
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 6/178 (3%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
+T + RTG++ + +G ++ +G T++ + ++ EE K G+
Sbjct: 1 MTLPAARTGVLARKVGMTRIFAADGRHVPVTVLSLDGCQVVGVRSEEERSVTTKKG-GQV 59
Query: 171 KRKLGCLLVGAESGDPSL--YTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPP-GTPLTA 227
R G V SGD TK G F +GV PK KL F ++ D LP G+ + A
Sbjct: 60 TRTDGYKAVIMGSGDKKAKNTTKALRGQFAKAGVAPKAKLKEFRVSGD--LPEVGSTVQA 117
Query: 228 AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
HF + +DV +++ +GF G MKRW F G+ A+HGV+ SHR G RV+
Sbjct: 118 DHFAEGQLVDVSAMSIGKGFAGAMKRWNFSGLRASHGVSISHRAHGSTGMNQDPGRVF 175
>gi|261338279|ref|ZP_05966163.1| 50S ribosomal protein L3 [Bifidobacterium gallicum DSM 20093]
gi|270276934|gb|EFA22788.1| 50S ribosomal protein L3 [Bifidobacterium gallicum DSM 20093]
Length = 216
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 79/173 (45%), Gaps = 13/173 (7%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
+ RT L+GK +G +W +NG TL+ V N ++ + EE
Sbjct: 5 ANRTALLGKKLGMSQVWDENGFFIPVTLIDVSTN-VVTAVKTEETD------------GY 51
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
+ +G DP+ TK G F +GV P++ L A PG LTA F
Sbjct: 52 NAVQLGYGQADPTKITKPMAGHFAKAGVTPRRHLAEVRTENVAEFEPGQELTAELFPEGV 111
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G T +GF G +KRWGFK THG K+ RR G + + A +R+ G
Sbjct: 112 QVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKG 164
>gi|332187797|ref|ZP_08389531.1| 50S ribosomal protein L3 [Sphingomonas sp. S17]
gi|332012147|gb|EGI54218.1| 50S ribosomal protein L3 [Sphingomonas sp. S17]
Length = 244
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ +G T++ + ++ + E +R Y
Sbjct: 2 RTGVIAKKLGMTRLFQDDGRHVPVTVLAL---EGVQVVARREM--DRDGYT--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA K G F + V PK+ L F + D +L G + A HF P +++
Sbjct: 49 VQLGAGVAKTKNVAKPQRGHFGKAEVEPKQVLVEFRVNEDGLLDVGAEIAADHFVPGQYV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
D++G T +GF G MKRW F G+ ATHGV+ SHR G + RV+
Sbjct: 109 DIQGRTQGKGFAGAMKRWNFGGLRATHGVSVSHRSHGSTGNRQDPGRVF 157
>gi|255712065|ref|XP_002552315.1| mitochondrial 54S ribosomal protein YmL9 [Lachancea thermotolerans]
gi|238933694|emb|CAR21877.1| KLTH0C02002p [Lachancea thermotolerans CBS 6340]
Length = 268
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPREFLD 237
VG S PS +++ G F + V PK+K+ F + + +LP GT + + F P +++D
Sbjct: 104 VGFGSKHPSKVSRQMLGHFASKIVNPKEKVVEFRVKDQSGLLPLGTLIKPSFFMPGQYVD 163
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+R ++ +GF GVMKR+ FKG+ A+HGV+ SHR+GG RV PG
Sbjct: 164 LRSISKGKGFAGVMKRYNFKGLKASHGVSVSHRKGGSYGQNQTPGRVLPG 213
>gi|407779022|ref|ZP_11126282.1| 50S ribosomal protein L3 [Nitratireductor pacificus pht-3B]
gi|407299306|gb|EKF18438.1| 50S ribosomal protein L3 [Nitratireductor pacificus pht-3B]
Length = 243
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + IG ++ + GE T++++ + ++ R E K
Sbjct: 2 RSGVIAQKIGMTRVYNEAGEHVPVTVLRMENCQVV-------------AQRTEDKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G +K G F + V PK K+ F ++PD +L G +T HF P + +
Sbjct: 49 VQLGVGIAKVKNTSKALRGHFAAASVEPKAKMAEFRVSPDNLLDVGAEITVEHFVPGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GFQGVMKR F G ATHG + SHR G +V+ G
Sbjct: 109 DVTGTSIGKGFQGVMKRHNFGGGRATHGNSVSHRSHGSTGQRQDPGKVFKG 159
>gi|414174077|ref|ZP_11428704.1| 50S ribosomal protein L3 [Afipia broomeae ATCC 49717]
gi|410890711|gb|EKS38510.1| 50S ribosomal protein L3 [Afipia broomeae ATCC 49717]
Length = 241
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 13/154 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ +R K
Sbjct: 2 RSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQVV-------------GHRTTEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G+ S K G F + V PK+K+ F ++ D+++P G + A HF +F+
Sbjct: 49 LQLGSGSRKSVYLPKAERGQFAVAKVEPKRKVAEFRVSEDSLIPVGAEIQADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 109 DVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHR 142
>gi|374576229|ref|ZP_09649325.1| 50S ribosomal protein L3, bacterial [Bradyrhizobium sp. WSM471]
gi|386402175|ref|ZP_10086953.1| 50S ribosomal protein L3, bacterial [Bradyrhizobium sp. WSM1253]
gi|374424550|gb|EHR04083.1| 50S ribosomal protein L3, bacterial [Bradyrhizobium sp. WSM471]
gi|385742801|gb|EIG62997.1| 50S ribosomal protein L3, bacterial [Bradyrhizobium sp. WSM1253]
Length = 237
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 16/165 (9%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ + R E K
Sbjct: 2 RSGVIAQKVGMTRVFTEAGEHIPVTVLKLGNCQVVGH-------------RTEEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G+ S K G F + V PK+++ F ++ D M+P G + A HF +F+
Sbjct: 49 LQLGSGSRKTVYMPKAERGQFAVAKVEPKRQVEEFRVSADQMIPVGAEILADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK 281
DV G +V +GF G MKRW F G+ ATHGV+ SHR I S G+
Sbjct: 109 DVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHR---SIGSTGGR 150
>gi|148260939|ref|YP_001235066.1| 50S ribosomal protein L3 [Acidiphilium cryptum JF-5]
gi|212288245|sp|A5FZW5.1|RL3_ACICJ RecName: Full=50S ribosomal protein L3
gi|146402620|gb|ABQ31147.1| LSU ribosomal protein L3P [Acidiphilium cryptum JF-5]
Length = 227
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 13/161 (8%)
Query: 114 SSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRK 173
S RTG+I K +G L+ ++G T++ + D ++ R + +
Sbjct: 2 SVMRTGIIAKKLGMTRLFREDGTHVPVTVLHMDDVRVV-------------AARTKERDG 48
Query: 174 LGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPR 233
+ +G TK G F + V P +L F + DA+L G L+AAHF
Sbjct: 49 YAAVQLGFGHAKTKNVTKPMKGHFAAAKVEPANRLVEFRVADDAVLEAGQVLSAAHFTVG 108
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
+ +DV G++ +GF G MKRW F+G+ A+HGV+ SHR G
Sbjct: 109 QKVDVAGISKGKGFAGGMKRWNFRGLEASHGVSISHRSLGS 149
>gi|222148366|ref|YP_002549323.1| 50S ribosomal protein L3 [Agrobacterium vitis S4]
gi|254803647|sp|B9JVN7.1|RL3_AGRVS RecName: Full=50S ribosomal protein L3
gi|221735354|gb|ACM36317.1| 50S ribosomal protein L3 [Agrobacterium vitis S4]
Length = 213
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ R K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHVPVTVLRLDNCQVL-------------AQRTVDKHGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA +K G F + V PK KL F ++ D ++ G+ L A HF + +
Sbjct: 49 VQLGAGQAKVKNTSKAMRGNFAAANVEPKAKLVEFRVSEDNLMDVGSELKAGHFEAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GF G MKR F G+ ATHGV+ SHR G S +V+ G
Sbjct: 109 DVTGTTIGKGFAGAMKRHNFGGLRATHGVSVSHRSHGSTGSNQDPGKVWKG 159
>gi|385724204|gb|AFI74125.1| ribosomal protein L3, partial [Bradyrhizobium sp. Mm1.3]
Length = 144
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 60/105 (57%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +GA S K G F + V PK+++ F +T DAM+P G +
Sbjct: 25 HRTEEKNGYVALQLGAGSRKTVYMPKAERGQFAVAKVEPKRQVEEFRVTADAMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 85 LADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR 129
>gi|254466883|ref|ZP_05080294.1| ribosomal protein L3 [Rhodobacterales bacterium Y4I]
gi|206687791|gb|EDZ48273.1| ribosomal protein L3 [Rhodobacterales bacterium Y4I]
Length = 234
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++ + ++ R E K
Sbjct: 2 RSGIIAKKVGMTRLFMEDGKQIPVTVLHLDGLQVV-------------AQRTEDKDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + ++ G F + V PK+KL F + DA++ G ++A HF + +
Sbjct: 49 VQLGAGTAKAKRTSQAMRGHFAAAKVEPKRKLVEFRVPADALIEVGAEISAEHFLAGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 159
>gi|116251540|ref|YP_767378.1| 50S ribosomal protein L3 [Rhizobium leguminosarum bv. viciae 3841]
gi|424874858|ref|ZP_18298520.1| 50S ribosomal protein L3, bacterial [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|123261675|sp|Q1MIE1.1|RL3_RHIL3 RecName: Full=50S ribosomal protein L3
gi|115256188|emb|CAK07269.1| putative 50S ribosomal protein L3 [Rhizobium leguminosarum bv.
viciae 3841]
gi|393170559|gb|EJC70606.1| 50S ribosomal protein L3, bacterial [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 213
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 76/161 (47%), Gaps = 13/161 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ ++ R K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHVPVTVLRMEGCQVV-------------ATRTVEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA +K G F + V PK KL F ++ D +L GT + A HF + +
Sbjct: 49 VQLGAGQAKVKNTSKAMRGNFAIANVEPKAKLTEFRVSEDQLLEVGTEIKAGHFAAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
DV G T+ +GF G MKR GF G+ ATHGV+ SHR G S
Sbjct: 109 DVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGS 149
>gi|158424178|ref|YP_001525470.1| 50S ribosomal protein L3 [Azorhizobium caulinodans ORS 571]
gi|158331067|dbj|BAF88552.1| ribosomal protein L3 [Azorhizobium caulinodans ORS 571]
Length = 248
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Query: 114 SSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRK 173
++ R+G+I + +G ++ GE T+++V ++ +R K
Sbjct: 6 TTMRSGVIAQKLGMTRIFTDAGEHLPVTVLKVESCQVV-------------AHRTLDKNG 52
Query: 174 LGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPR 233
+ +GA P K G F + V PK+KL F + DA++P G +TA HF
Sbjct: 53 YVAVQLGAGKRKPKNTNKAERGQFARAEVEPKRKLAEFRVDADALIPVGAEITADHFVVG 112
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
+++DV G T+ +GF G MKR F G+ A+HGV+ SHR
Sbjct: 113 QYVDVTGTTIGKGFAGGMKRHNFGGLRASHGVSISHR 149
>gi|363748851|ref|XP_003644643.1| hypothetical protein Ecym_2069 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888276|gb|AET37826.1| Hypothetical protein Ecym_2069 [Eremothecium cymbalariae
DBVPG#7215]
Length = 266
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 99/203 (48%), Gaps = 15/203 (7%)
Query: 87 APAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWM-KNGEKCRTTLVQV 145
A +V S ++ + P + E +R G + K +G P + G +C T++++
Sbjct: 21 AASVASVVQQAAPAINHSPEKAHERRWLPQRCGSLTKKVGMMPYFDPATGNRCAATVLEM 80
Query: 146 VDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPK 205
+ ++ + K N C VG + P +++ G F + V PK
Sbjct: 81 NNVEVLMH---RTLKDNGY---------YACQ-VGYGNKRPDKVSRQMLGHFASKLVNPK 127
Query: 206 KKLCRF-IITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHG 264
+KL F + + + +LP GT + + F+P +FLDV ++ +GF GVMKR GFKG+ A+HG
Sbjct: 128 EKLAEFRVKSENGLLPLGTLIKPSFFKPGQFLDVVSVSKGKGFAGVMKRHGFKGLNASHG 187
Query: 265 VTKSHRRGGCIASGAGKARVYPG 287
V+ +HR GG RV PG
Sbjct: 188 VSLAHRSGGSYGQNQTPGRVLPG 210
>gi|149247048|ref|XP_001527949.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146447903|gb|EDK42291.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 278
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 16/128 (12%)
Query: 176 CLLVGAESGDPSLYTKEYCG---------------LFKNSGVPPKKKLCRF-IITPDAML 219
C ++G ++ D Y G +F+ +GV PK K F ++ + ++
Sbjct: 90 CEVIGQKTRDQHGYDANIIGTIDKLKNYPREAELKMFEEAGVSPKHKFGEFRVLDTNNLI 149
Query: 220 PPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGA 279
P GT L A +F + +D++G+T +GF GVMKRW F G ATHGV+K+HR G +
Sbjct: 150 PVGTELKADYFSVGQMVDIKGITKGKGFAGVMKRWNFAGNNATHGVSKAHRTPGSMGGNQ 209
Query: 280 GKARVYPG 287
RV PG
Sbjct: 210 NPGRVLPG 217
>gi|83858566|ref|ZP_00952088.1| 50S ribosomal protein L3 [Oceanicaulis sp. HTCC2633]
gi|83853389|gb|EAP91241.1| 50S ribosomal protein L3 [Oceanicaulis sp. HTCC2633]
Length = 246
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTGL+ K +G ++ ++G+ T++ + ++ R
Sbjct: 2 RTGLLAKKLGMTRVFTEDGDHVPVTVLHLDGLQVV-------------AQRTSENDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA +K G F + V PK+KL F + DA++ G L+A HF + +
Sbjct: 49 VQLGAGKAKAKRTSKAMRGHFAKASVEPKRKLVEFRVPEDALIEAGAELSAEHFVVGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKRW F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DVSGTSIGKGFAGGMKRWNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 159
>gi|326404337|ref|YP_004284419.1| 50S ribosomal protein L3 [Acidiphilium multivorum AIU301]
gi|325051199|dbj|BAJ81537.1| 50S ribosomal protein L3 [Acidiphilium multivorum AIU301]
Length = 225
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++ + D ++ E R Y
Sbjct: 3 RTGIIAKKLGMTRLFREDGTHVPVTVLHMDDVRVVAARTKE-----RDGY--------AA 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G TK G F + V P +L F + DA+L G L+AAHF + +
Sbjct: 50 VQLGFGHAKTKNVTKPMKGHFAAAKVEPANRLVEFRVADDAVLEAGQVLSAAHFTVGQKV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G++ +GF G MKRW F+G+ A+HGV+ SHR G
Sbjct: 110 DVAGISKGKGFAGGMKRWNFRGLEASHGVSISHRSLGS 147
>gi|354545097|emb|CCE41822.1| hypothetical protein CPAR2_803720 [Candida parapsilosis]
Length = 277
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 83/173 (47%), Gaps = 14/173 (8%)
Query: 116 KRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLG 175
+R GL G G + GE+ T++++ +I + EE+ G +G
Sbjct: 56 ERPGLFGIKQGMITWFTSKGEQIPATVLEIDSVEVIGHKTKEEY--------GYDANIIG 107
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPRE 234
+ P L+ E +F +G PK K F + ++P GT L A +F +
Sbjct: 108 T--IDKLKNYPRLHELE---MFNKAGTSPKYKFGEFRVRDSTNLIPLGTELKADYFAVGQ 162
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV+G+T +GF GVMKRW FKG ATHGV+K+HR G + RV PG
Sbjct: 163 LVDVKGVTKGKGFAGVMKRWNFKGGRATHGVSKAHRTPGAMGGNQNPGRVLPG 215
>gi|421586959|ref|ZP_16032429.1| 50S ribosomal protein L3 [Rhizobium sp. Pop5]
gi|403708714|gb|EJZ23314.1| 50S ribosomal protein L3 [Rhizobium sp. Pop5]
Length = 213
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 13/161 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ ++ R K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHVPVTVLRMDGCQVV-------------ATRTVEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA +K G F + V PK KL F ++ D +L GT L A HF + +
Sbjct: 49 VQLGAGQAKVKNTSKAMRGNFAVANVEPKAKLQEFRVSEDNLLEIGTELKAGHFAAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
DV G T+ +GF G MKR GF G+ ATHGV+ SHR G S
Sbjct: 109 DVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGS 149
>gi|390450919|ref|ZP_10236503.1| 50S ribosomal protein L3 [Nitratireductor aquibiodomus RA22]
gi|389661681|gb|EIM73280.1| 50S ribosomal protein L3 [Nitratireductor aquibiodomus RA22]
Length = 240
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + IG ++ + GE T++++ + ++ R E K
Sbjct: 2 RSGVIAQKIGMTRVYNEAGEHVPVTVLRMENCQVV-------------AQRTEEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G +K G F + V PK K+ F ++PD +L G +T HF P + +
Sbjct: 49 VQLGVGLAKVKNTSKALRGHFATASVEPKAKVAEFRVSPDNLLDVGAEITVEHFVPGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GFQGVMKR F G ATHG + SHR G +V+ G
Sbjct: 109 DVTGTSIGKGFQGVMKRHNFGGGRATHGNSVSHRSHGSTGQRQDPGKVFKG 159
>gi|338989185|ref|ZP_08634056.1| RplC [Acidiphilium sp. PM]
gi|338205872|gb|EGO94137.1| RplC [Acidiphilium sp. PM]
Length = 224
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++ + D ++ E R Y
Sbjct: 2 RTGIIAKKLGMTRLFREDGTHVPVTVLHMDDVRVVAARTKE-----RDGY--------AA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G TK G F + V P +L F + DA+L G L+AAHF + +
Sbjct: 49 VQLGFGHAKTKNVTKPMKGHFAAAKVEPANRLVEFRVADDAVLEAGQVLSAAHFTVGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G++ +GF G MKRW F+G+ A+HGV+ SHR G
Sbjct: 109 DVAGISKGKGFAGGMKRWNFRGLEASHGVSISHRSLGS 146
>gi|339504870|ref|YP_004692290.1| 50S ribosomal protein L3 [Roseobacter litoralis Och 149]
gi|338758863|gb|AEI95327.1| 50S ribosomal protein L3 [Roseobacter litoralis Och 149]
Length = 286
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++Q+ ++ R K
Sbjct: 3 RSGVIAKKVGMTRLFMEDGKQIPVTVLQLDKLQVV-------------AQRTSDKDGYSA 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + ++ G F + V PK+K+ F + + ++ G +TA H+ +F+
Sbjct: 50 VQLGAGTAKAKRTSQAMRGHFAAAKVEPKRKVAEFRVDAENLIGVGEEITANHYFEGQFV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ ATHGV+ SHR G +V+ G
Sbjct: 110 DVAGTSIGKGFAGAMKRHNFGGLRATHGVSISHRSHGSTGQCQDPGKVFKG 160
>gi|212288260|sp|A8IAS6.2|RL3_AZOC5 RecName: Full=50S ribosomal protein L3
Length = 241
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 13/154 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T+++V ++ +R K
Sbjct: 2 RSGVIAQKLGMTRIFTDAGEHLPVTVLKVESCQVV-------------AHRTLDKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA P K G F + V PK+KL F + DA++P G +TA HF +++
Sbjct: 49 VQLGAGKRKPKNTNKAERGQFARAEVEPKRKLAEFRVDADALIPVGAEITADHFVVGQYV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
DV G T+ +GF G MKR F G+ A+HGV+ SHR
Sbjct: 109 DVTGTTIGKGFAGGMKRHNFGGLRASHGVSISHR 142
>gi|399069901|ref|ZP_10749571.1| 50S ribosomal protein L3, bacterial [Caulobacter sp. AP07]
gi|398044817|gb|EJL37613.1| 50S ribosomal protein L3, bacterial [Caulobacter sp. AP07]
Length = 256
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
+T ++RTG++ + +G + + G+ T++ + + R
Sbjct: 1 MTLPAQRTGVLARKLGMTRFFDETGQHIPVTVLSLDGCQVT-------------AQRTVE 47
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
K L +GA + P +K G F V PK+ + F + A++ G TA H+
Sbjct: 48 KDGYTALQLGAGAKKPKNTSKAMRGHFAKGAVEPKRVVAEFRVDEAALIEVGAEFTADHY 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +D++G+TV +GF G MKRW F G+ ATHGV+ SHR G + R +PG
Sbjct: 108 VAGQKVDIQGVTVGKGFAGAMKRWNFGGLRATHGVSVSHRSHGSTGNRQDPGRTFPG 164
>gi|407976942|ref|ZP_11157837.1| 50S ribosomal protein L3 [Nitratireductor indicus C115]
gi|407427669|gb|EKF40358.1| 50S ribosomal protein L3 [Nitratireductor indicus C115]
Length = 243
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ R E K
Sbjct: 2 RSGVIAQKVGMTRVYNEAGEHVPVTVLRMENCQVV-------------AQRTEEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G +K G + + V PK KL F ++PD +L G +TA HF P + +
Sbjct: 49 VQLGVGLAKVKNTSKALRGHYAVASVEPKAKLAEFRVSPDNLLDVGAEITAEHFVPGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GFQGVMKR F G ATHG + SHR G +V+ G
Sbjct: 109 DVTGTSIGKGFQGVMKRHNFGGGRATHGNSVSHRSHGSTGQRQDPGKVFKG 159
>gi|448509714|ref|XP_003866202.1| hypothetical protein CORT_0A03740 [Candida orthopsilosis Co 90-125]
gi|380350540|emb|CCG20762.1| hypothetical protein CORT_0A03740 [Candida orthopsilosis Co 90-125]
Length = 277
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 83/173 (47%), Gaps = 14/173 (8%)
Query: 116 KRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLG 175
+R GL G G + GE+ T++++ +I + EEF G +G
Sbjct: 56 ERPGLFGIKQGMITWFTSKGEQIPATVLEIDSVEVIGHKTKEEF--------GYDANIIG 107
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPRE 234
+ P L+ + +F +G PK K F + ++P GT L A +F +
Sbjct: 108 T--IDKLKNYPRLHELQ---MFGKAGTSPKYKFGEFRVRDSTNLIPLGTELKANYFAVGQ 162
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV+G+T +GF GVMKRW FKG ATHGV+K+HR G + RV PG
Sbjct: 163 LVDVKGITKGKGFAGVMKRWNFKGGRATHGVSKAHRTPGAMGGNQNPGRVLPG 215
>gi|402486084|ref|ZP_10832916.1| 50S ribosomal protein L3 [Rhizobium sp. CCGE 510]
gi|401814740|gb|EJT07070.1| 50S ribosomal protein L3 [Rhizobium sp. CCGE 510]
Length = 213
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 13/161 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ ++ R K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHVPVTVLRMEAVQVV-------------ATRTVEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA +K G F + V PK K+ F ++ D +L GT + A HF + +
Sbjct: 49 VQLGAGQAKVKNTSKAMRGNFAIANVEPKAKVTEFRVSEDQLLEIGTEIKAGHFAAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
DV G T+ +GF G MKR GF G+ ATHGV+ SHR G S
Sbjct: 109 DVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGS 149
>gi|424894637|ref|ZP_18318211.1| 50S ribosomal protein L3, bacterial [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393178864|gb|EJC78903.1| 50S ribosomal protein L3, bacterial [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 213
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 76/161 (47%), Gaps = 13/161 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ ++ R K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHVPVTVLRMEAVQVV-------------ATRTVEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA +K G F + V PK K+ F ++ D +L GT L A HF + +
Sbjct: 49 VQLGAGQAKVKNTSKAMRGNFAIANVEPKAKIQEFRVSEDNLLEIGTELKAGHFAAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
DV G T+ +GF G MKR GF G+ ATHGV+ SHR G S
Sbjct: 109 DVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGS 149
>gi|385724222|gb|AFI74134.1| ribosomal protein L3, partial [Bradyrhizobium sp. Albi6]
Length = 144
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 60/105 (57%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +GA + K G F + V PK+++ F +T DAM+P G +
Sbjct: 25 HRTEEKNGYVALQLGAGTRKTVYMPKAERGQFAVAKVEPKRQVEEFRVTADAMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 85 QADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR 129
>gi|385724212|gb|AFI74129.1| ribosomal protein L3, partial [Bradyrhizobium sp. Pe5.2b]
Length = 144
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 60/105 (57%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +GA + K G F + V PK+++ F +T DAM+P G +
Sbjct: 25 HRTEEKNGYVALQLGAGARKTVYMPKAERGQFAVAKVEPKRRVEEFRVTADAMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 85 QADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR 129
>gi|385724352|gb|AFI74199.1| ribosomal protein L3, partial [Bradyrhizobium sp. mg1.11]
Length = 144
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 60/105 (57%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +G+ S K G F + V PK+++ F +T DAM+P G +
Sbjct: 25 HRTEEKNGYVALQLGSGSRKTVYMPKAERGQFAVAKVEPKRQVEEFRVTADAMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 85 QADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR 129
>gi|379331840|gb|AFD02406.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. DesT10]
gi|379331862|gb|AFD02417.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. Lpsp.1b]
gi|379331864|gb|AFD02418.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. Lpsp3.4]
Length = 144
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 60/106 (56%)
Query: 165 PYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTP 224
+R E K L +GA S K G F + V PK+++ F ++ DAM+P G
Sbjct: 24 AHRTEEKNGYVALQLGAGSRKTVYLPKAERGQFAVAKVEPKRQVEEFRVSADAMIPVGAE 83
Query: 225 LTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
+ A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 84 ILADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHR 129
>gi|385724278|gb|AFI74162.1| ribosomal protein L3, partial [Bradyrhizobium sp. cnc25]
Length = 144
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 60/105 (57%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +GA + K G F + V PK+++ F +T DAM+P G +
Sbjct: 25 HRTEEKNGYVALQLGAGTRKTVYMPKAERGQFAVAKVEPKRQVEEFRVTADAMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 85 QADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR 129
>gi|379331856|gb|AFD02414.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. LcCT4]
gi|379331908|gb|AFD02440.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. cmy11]
gi|379331922|gb|AFD02447.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. gvr5]
gi|379331976|gb|AFD02474.1| 50S ribosomal protein L3, partial [Bradyrhizobium yuanmingense]
gi|385724206|gb|AFI74126.1| ribosomal protein L3, partial [Bradyrhizobium sp. phym.6a]
gi|385724226|gb|AFI74136.1| ribosomal protein L3, partial [Bradyrhizobium sp. cana6a.9]
gi|385724272|gb|AFI74159.1| ribosomal protein L3, partial [Bradyrhizobium sp. cam1]
gi|385724274|gb|AFI74160.1| ribosomal protein L3, partial [Bradyrhizobium sp. cam4]
gi|385724280|gb|AFI74163.1| ribosomal protein L3, partial [Bradyrhizobium sp. cnf2]
gi|385724282|gb|AFI74164.1| ribosomal protein L3, partial [Bradyrhizobium sp. crc15]
gi|385724286|gb|AFI74166.1| ribosomal protein L3, partial [Bradyrhizobium sp. crf4]
gi|385724288|gb|AFI74167.1| ribosomal protein L3, partial [Bradyrhizobium sp. cri4]
gi|385724300|gb|AFI74173.1| ribosomal protein L3, partial [Bradyrhizobium sp. dsp3]
gi|385724310|gb|AFI74178.1| ribosomal protein L3, partial [Bradyrhizobium sp. ic20]
gi|385724324|gb|AFI74185.1| ribosomal protein L3, partial [Bradyrhizobium sp. mc3]
gi|385724326|gb|AFI74186.1| ribosomal protein L3, partial [Bradyrhizobium sp. mag1]
gi|385724328|gb|AFI74187.1| ribosomal protein L3, partial [Bradyrhizobium sp. rm16]
gi|385724330|gb|AFI74188.1| ribosomal protein L3, partial [Bradyrhizobium sp. rm4]
gi|385724338|gb|AFI74192.1| ribosomal protein L3, partial [Bradyrhizobium sp. zto4]
gi|385724356|gb|AFI74201.1| ribosomal protein L3, partial [Bradyrhizobium sp. mg1.19]
gi|385724362|gb|AFI74204.1| ribosomal protein L3, partial [Bradyrhizobium sp. mg1.7]
gi|385724390|gb|AFI74218.1| ribosomal protein L3, partial [Bradyrhizobium sp. cvc20]
gi|385724392|gb|AFI74219.1| ribosomal protein L3, partial [Bradyrhizobium sp. cvc8]
gi|385724394|gb|AFI74220.1| ribosomal protein L3, partial [Bradyrhizobium sp. cbr5]
gi|385724400|gb|AFI74223.1| ribosomal protein L3, partial [Bradyrhizobium sp. picf1]
gi|385724416|gb|AFI74231.1| ribosomal protein L3, partial [Bradyrhizobium sp. psr4]
Length = 144
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 60/105 (57%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +G+ S K G F + V PK+++ F +T DAM+P G +
Sbjct: 25 HRTEEKNGYVALQLGSGSRKTVYMPKAERGQFAVAKVEPKRRVEEFRVTADAMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 85 QADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR 129
>gi|347758881|ref|YP_004866443.1| 50S ribosomal protein L3 [Micavibrio aeruginosavorus ARL-13]
gi|347591399|gb|AEP10441.1| ribosomal L3 family protein [Micavibrio aeruginosavorus ARL-13]
Length = 244
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTGLI + G ++ + G T++++ ++ R E K
Sbjct: 2 RTGLIARKEGMTRIFDEEGRSVPVTVLKIDGCQVV-------------AVRTEDKDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA K G F + V PKKK+ F ++P+ ++ G + A+HF + +
Sbjct: 49 VQLGAGVAKVKRTAKAQRGHFAKAKVEPKKKVAEFRVSPENLIEVGAEICASHFVAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G+T +GF G MKRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGITTGKGFAGPMKRWNFGGLRATHGVSVSHRSHGS 146
>gi|260942335|ref|XP_002615466.1| hypothetical protein CLUG_04349 [Clavispora lusitaniae ATCC 42720]
gi|238850756|gb|EEQ40220.1| hypothetical protein CLUG_04349 [Clavispora lusitaniae ATCC 42720]
Length = 279
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 61/99 (61%), Gaps = 1/99 (1%)
Query: 190 TKEYCGLFKNSGVPPKKKLCRFII-TPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQ 248
++ + L ++GV PK K F + T D ++ PGT +TA +F + +DV+ ++ +GF
Sbjct: 120 SRYHVKLCSDAGVSPKAKFGEFRVRTDDGIISPGTEITADYFAVGQLVDVKAVSKGKGFA 179
Query: 249 GVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GVMKR GFKG+ ATHGV+ SHR G + + RV PG
Sbjct: 180 GVMKRHGFKGLRATHGVSVSHRSAGSMGATQDPGRVLPG 218
>gi|119383511|ref|YP_914567.1| 50S ribosomal protein L3 [Paracoccus denitrificans PD1222]
gi|166233172|sp|A1B027.1|RL3_PARDP RecName: Full=50S ribosomal protein L3
gi|119373278|gb|ABL68871.1| LSU ribosomal protein L3P [Paracoccus denitrificans PD1222]
Length = 245
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L++++G + T++ V + +I E+ Y
Sbjct: 3 RTGVIAKKLGMTRLFLEDGRQVPVTVLHVDNVQVIAQRTAEQ-----DGYV--------A 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +GA T G F + V PK+K+ F ++P+ ++ G + A H+ +++
Sbjct: 50 LQLGAGEAKAKRTTAALRGHFAKANVAPKRKIAEFRVSPENLVEVGEEIVADHYFEGQYV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D+ G ++ +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 110 DIAGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 160
>gi|254461019|ref|ZP_05074435.1| ribosomal protein L3 [Rhodobacterales bacterium HTCC2083]
gi|206677608|gb|EDZ42095.1| ribosomal protein L3 [Rhodobacteraceae bacterium HTCC2083]
Length = 241
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G+ T++Q+ ++ R K
Sbjct: 2 RSGIIAKKVGMTRLFMEDGKAIPVTVLQLDALQVV-------------AQRTSDKDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + ++ G F + V PK+K+ F ++ D ++ G ++A H+ + +
Sbjct: 49 VQLGAGTAKAKRTSQAMRGHFAAAKVAPKRKVAEFRVSEDNLINVGEEISAEHYLEGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GFQG MKR F G+ ATHGV+ SHR G +V+ G
Sbjct: 109 DVSGTSIGKGFQGAMKRHNFGGLRATHGVSISHRSHGSTGQCQDPGKVFKG 159
>gi|91977652|ref|YP_570311.1| 50S ribosomal protein L3 [Rhodopseudomonas palustris BisB5]
gi|123748930|sp|Q134S9.1|RL3_RHOPS RecName: Full=50S ribosomal protein L3
gi|91684108|gb|ABE40410.1| LSU ribosomal protein L3P [Rhodopseudomonas palustris BisB5]
Length = 241
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 13/154 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ +R K
Sbjct: 2 RSGVIAQKVGMTRVFTEAGEHIPVTVLKLGNCQVV-------------AHRTTEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G+ + K G F + V PK+K+ F ++ DA++P G + A HF +F+
Sbjct: 49 LQLGSGARKTVYMPKAERGQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
DV G + +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 109 DVTGTSTGKGFAGGMKRWNFGGLRATHGVSVSHR 142
>gi|372278261|ref|ZP_09514297.1| 50S ribosomal protein L3 [Oceanicola sp. S124]
Length = 241
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++Q+ + ++ R
Sbjct: 3 RSGIIAKKVGMTRLFMEDGKQIPVTVLQLENLQVV-------------AQRTAESNGYTA 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + ++ G F + V PK+K+ F + P+ ++ G ++A H+ +F+
Sbjct: 50 VQLGAGNAKAKRTSQAMRGHFAAAKVEPKRKVAEFRVDPENLIEVGAEISADHYFEGQFV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 110 DVSGTSIGKGFAGGMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 160
>gi|426400734|ref|YP_007019706.1| 50S ribosomal protein L3 family protein [Candidatus Endolissoclinum
patella L2]
gi|425857402|gb|AFX98438.1| ribosomal L3 family protein [Candidatus Endolissoclinum patella L2]
Length = 229
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+GLI +G ++ K GE T++ V D +I R + K
Sbjct: 2 RSGLISHKLGMTRVFTKEGEHIPVTVLIVEDCRVI-------------AQRTKEKDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G G F + V PK+ L F I+ DA++ G L+A HF + +
Sbjct: 49 LQLGVGCRKVKRTPLPMRGHFSKAKVQPKRNLTEFRISDDALIDVGVELSAGHFIVGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G+++ +GF GVMKR F G+ A+HGV+ SHR G + RV+PG
Sbjct: 109 DVIGISIGKGFAGVMKRHNFGGLRASHGVSLSHRSHGSTGNNQDPGRVFPG 159
>gi|209548935|ref|YP_002280852.1| 50S ribosomal protein L3 [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|424914486|ref|ZP_18337850.1| 50S ribosomal protein L3, bacterial [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|226730555|sp|B5ZYT5.1|RL3_RHILW RecName: Full=50S ribosomal protein L3
gi|209534691|gb|ACI54626.1| ribosomal protein L3 [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|392850662|gb|EJB03183.1| 50S ribosomal protein L3, bacterial [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 213
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 13/161 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ ++ R K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHVPVTVLRMDGCQVV-------------ATRTVEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA +K G F + V PK K+ F ++ D +L GT + A HF + +
Sbjct: 49 VQLGAGQAKVKNTSKAMRGNFAVANVEPKAKVAEFRVSEDQLLEIGTEIKAGHFAAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
DV G T+ +GF G MKR GF G+ ATHGV+ SHR G S
Sbjct: 109 DVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGS 149
>gi|37912991|gb|AAR05320.1| ribosomal protein L3 [uncultured marine alpha proteobacterium
HOT2C01]
Length = 229
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 78/171 (45%), Gaps = 15/171 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K IG L+ ++G T++ V + II + E ++
Sbjct: 2 RSGIIAKKIGMSNLYTQSGTNIPVTVLHVENCKIIDRVTSENENSDK------------- 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+LVGA K G F K L F I+ D + G L A+HF+ +F+
Sbjct: 49 VLVGACK--LKKTKKSQKGFFDKKKTDAYKYLREFEISKDQEIKSGDELKASHFKEGQFI 106
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T +GF GVMKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 107 DVSGYTKGKGFAGVMKRHNFSGLRASHGVSVSHRSHGSTGQCQDPGKVFKG 157
>gi|241204165|ref|YP_002975261.1| 50S ribosomal protein L3 [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|424881130|ref|ZP_18304762.1| 50S ribosomal protein L3, bacterial [Rhizobium leguminosarum bv.
trifolii WU95]
gi|240858055|gb|ACS55722.1| ribosomal protein L3 [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|392517493|gb|EIW42225.1| 50S ribosomal protein L3, bacterial [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 213
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 13/161 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ ++ R K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHVPVTVLRMEAVQVV-------------ATRTVEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA +K G F + V PK K+ F ++ D +L GT + A HF + +
Sbjct: 49 VQLGAGQAKVKNTSKAMRGNFAIANVEPKAKVTEFRVSEDNLLEIGTEIKAGHFAAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
DV G T+ +GF G MKR GF G+ ATHGV+ SHR G S
Sbjct: 109 DVTGTTIGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGS 149
>gi|385724388|gb|AFI74217.1| ribosomal protein L3, partial [Bradyrhizobium sp. pibl5]
gi|385724412|gb|AFI74229.1| ribosomal protein L3, partial [Bradyrhizobium sp. piim2]
Length = 144
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 60/105 (57%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +G+ S K G F + V PK+++ F +T DAM+P G +
Sbjct: 25 HRTEEKNGYVALQLGSGSRKTVYMPKAERGQFAVAKVEPKRRVEEFRVTADAMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 85 LADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR 129
>gi|385724186|gb|AFI74116.1| ribosomal protein L3, partial [Bradyrhizobium sp. Da3.1]
gi|385724200|gb|AFI74123.1| ribosomal protein L3, partial [Bradyrhizobium sp. Lop2.4b]
Length = 144
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 60/105 (57%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +GA + K G F + V PK+++ F +T DAM+P G +
Sbjct: 25 HRTEEKNGYVALQLGAGTRKTVYMPKAERGQFAVAKVEPKRQVEEFRVTADAMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 85 LADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR 129
>gi|110634030|ref|YP_674238.1| 50S ribosomal protein L3 [Chelativorans sp. BNC1]
gi|122965958|sp|Q11HQ2.1|RL3_MESSB RecName: Full=50S ribosomal protein L3
gi|110285014|gb|ABG63073.1| LSU ribosomal protein L3P [Chelativorans sp. BNC1]
Length = 242
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + IG ++ + GE T++++ + ++ R E K
Sbjct: 2 RSGVIAQKIGMTRVYNETGEHIPVTVLRMENCQVV-------------AQRTEEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G +K G F + V PK K+ F ++P+ +L G +TA HF P + +
Sbjct: 49 VQLGVGLAKVKNTSKALRGHFAAASVEPKAKVAEFRVSPENLLDVGAEITADHFVPGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GFQGVMKR F G ATHG + SHR G +V+ G
Sbjct: 109 DVTGTSIGKGFQGVMKRHNFGGGRATHGNSVSHRTHGSTGQRQDPGKVFKG 159
>gi|383808635|ref|ZP_09964173.1| 50S ribosomal protein L3 [Rothia aeria F0474]
gi|383448529|gb|EID51488.1| 50S ribosomal protein L3 [Rothia aeria F0474]
Length = 218
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G +G +W ++G+ T+V+ D++++ I R + +
Sbjct: 11 GLLGTKLGMTQVWDEDGKFVPVTVVKA-DSNVVTQI------------RNQETDGYTAVQ 57
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+G + D TK G F+ +GV P++ L A PG LT F + +DV
Sbjct: 58 IGFGAIDSRKVTKPLAGHFEKAGVTPRRHLVEVRTADAAEYTPGQELTVEMFEVGQKVDV 117
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T +GF GVMKR GFKG+ A+HG K+HR+ G I + ARV+ G
Sbjct: 118 VGKTKGKGFAGVMKRHGFKGVGASHGQHKNHRKPGSIGGASYPARVFKG 166
>gi|315497973|ref|YP_004086777.1| 50S ribosomal protein L3 [Asticcacaulis excentricus CB 48]
gi|315415985|gb|ADU12626.1| 50S ribosomal protein L3 [Asticcacaulis excentricus CB 48]
Length = 243
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTGL+ K +G + G+ T++ + ++ R + K
Sbjct: 2 RTGLLAKKLGMTRYFDAQGQHVPVTVLSLEGCQVV-------------AQRTKDKDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +GA + +K F + V PK L F ++ DA++ G +A HF + +
Sbjct: 49 LQLGAGTRKAKNVSKPERERFAKAQVEPKAILSEFRVSEDALVEVGAEFSADHFVEGQRV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D++G T+ +GF G MKRW F GM ATHGV+ SHR G + R +PG
Sbjct: 109 DIQGTTIGKGFAGAMKRWNFGGMRATHGVSVSHRAHGSTGNRQDPGRTFPG 159
>gi|385724242|gb|AFI74144.1| ribosomal protein L3, partial [Bradyrhizobium sp. ie2.14]
gi|385724244|gb|AFI74145.1| ribosomal protein L3, partial [Bradyrhizobium sp. ie3.5]
gi|385724246|gb|AFI74146.1| ribosomal protein L3, partial [Bradyrhizobium sp. im5]
gi|385724248|gb|AFI74147.1| ribosomal protein L3, partial [Bradyrhizobium sp. is5.9]
gi|385724250|gb|AFI74148.1| ribosomal protein L3, partial [Bradyrhizobium sp. is7.9]
Length = 144
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 60/105 (57%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +G+ S K G F + V PK+++ F +T DAM+P G +
Sbjct: 25 HRTEEKNGYVALQLGSGSRKTVYMPKAERGQFAVAKVEPKRQVEEFRVTADAMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 85 LADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR 129
>gi|415718755|ref|ZP_11467561.1| 50S ribosomal protein L3 [Gardnerella vaginalis 1500E]
gi|388059797|gb|EIK82515.1| 50S ribosomal protein L3 [Gardnerella vaginalis 1500E]
Length = 216
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 84/180 (46%), Gaps = 19/180 (10%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRG 168
++ + RT L+G+ +G +W +NG TLV+V N + +K + + +
Sbjct: 1 MSQNKNRTALLGRKLGMSQVWDENGFFVPVTLVEVATNVVTAVKTVESDGY--------- 51
Query: 169 EPKRKLGCLL-VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTA 227
C + +G DP+ TK G F +GV P++ L A PG LTA
Sbjct: 52 -------CAVQLGYGQIDPTKVTKPLAGHFAKAGVTPRRHLAEVRTENAADYQPGQELTA 104
Query: 228 AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F +DV G T +GF G +KRWGFK THG K+ RR G + + A +R+ G
Sbjct: 105 ELFAEGSEVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKG 164
>gi|395786492|ref|ZP_10466219.1| 50S ribosomal protein L3 [Bartonella tamiae Th239]
gi|423716615|ref|ZP_17690805.1| 50S ribosomal protein L3 [Bartonella tamiae Th307]
gi|395422790|gb|EJF88986.1| 50S ribosomal protein L3 [Bartonella tamiae Th239]
gi|395428689|gb|EJF94764.1| 50S ribosomal protein L3 [Bartonella tamiae Th307]
Length = 245
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ +GE T++++ + H++ E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRVYNDSGEHVPVTVLRLDNCHVVAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L ++ ++ G F + V PK K+ F +TPD +L G +TA HF P + +
Sbjct: 54 GLAKVKNTSQAMR-----GHFAKASVEPKAKVAEFRVTPDNLLDVGAEITAEHFVPGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQRQDPGKVFKG 159
>gi|283782758|ref|YP_003373512.1| 50S ribosomal protein L3 [Gardnerella vaginalis 409-05]
gi|297242968|ref|ZP_06926906.1| ribosomal protein L3 [Gardnerella vaginalis AMD]
gi|298253073|ref|ZP_06976865.1| ribosomal protein L3 [Gardnerella vaginalis 5-1]
gi|415709574|ref|ZP_11463199.1| 50S ribosomal protein L3 [Gardnerella vaginalis 6420B]
gi|415726162|ref|ZP_11470663.1| 50S ribosomal protein L3 [Gardnerella vaginalis 00703Dmash]
gi|283442144|gb|ADB14610.1| 50S ribosomal protein L3 [Gardnerella vaginalis 409-05]
gi|296889179|gb|EFH27913.1| ribosomal protein L3 [Gardnerella vaginalis AMD]
gi|297532468|gb|EFH71354.1| ribosomal protein L3 [Gardnerella vaginalis 5-1]
gi|388056246|gb|EIK79122.1| 50S ribosomal protein L3 [Gardnerella vaginalis 6420B]
gi|388064035|gb|EIK86603.1| 50S ribosomal protein L3 [Gardnerella vaginalis 00703Dmash]
Length = 216
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 84/180 (46%), Gaps = 19/180 (10%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRG 168
++ + RT L+G+ +G +W +NG TLV+V N + +K + + +
Sbjct: 1 MSQNKNRTALLGRKLGMSQVWDENGFFVPVTLVEVATNVVTAVKTVESDGY--------- 51
Query: 169 EPKRKLGCLL-VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTA 227
C + +G DP+ TK G F +GV P++ L A PG LTA
Sbjct: 52 -------CAVQLGYGQIDPTKVTKPLAGHFAKAGVTPRRHLAEVRTENAADYQPGQELTA 104
Query: 228 AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F +DV G T +GF G +KRWGFK THG K+ RR G + + A +R+ G
Sbjct: 105 ELFAEGSEVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKG 164
>gi|381201000|ref|ZP_09908131.1| 50S ribosomal protein L3 [Sphingobium yanoikuyae XLDN2-5]
Length = 239
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 56/110 (50%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREF 235
L +GA K G F + V PK +L F + DA+L G + A HF +
Sbjct: 37 ALQLGAGVAKAKNVAKPQRGHFAKAEVEPKARLVEFRVAEDALLDVGAEIAADHFVAGQL 96
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
+DV G T +GF G MKRWGF GM ATHGV+ SHR G + RV+
Sbjct: 97 VDVAGHTQGKGFAGAMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVF 146
>gi|365985936|ref|XP_003669800.1| hypothetical protein NDAI_0D02430 [Naumovozyma dairenensis CBS 421]
gi|343768569|emb|CCD24557.1| hypothetical protein NDAI_0D02430 [Naumovozyma dairenensis CBS 421]
Length = 271
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 99/203 (48%), Gaps = 15/203 (7%)
Query: 87 APAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWM-KNGEKCRTTLVQV 145
AP+++S +++ P+ P+Q K GLIG+ IG P + + G++ T++++
Sbjct: 27 APSIRSTMKSSPPPINHSPIQAFSRKWLPKDCGLIGQKIGMAPFFDPETGDRIAATILEI 86
Query: 146 VDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPK 205
+ +I + R VG + + T++ G F + + PK
Sbjct: 87 NNVEVIMH-------------RTLESNGYWANQVGYGTKNYLNETRQMLGHFASKLINPK 133
Query: 206 KKLCRFIITPDA-MLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHG 264
K+ F + + +LP GT L + F+ +F+D++ ++ +GF GVMK++ FKG+ A+HG
Sbjct: 134 LKIAEFRVKESSGLLPLGTHLKPSFFKVGQFVDLKSVSKGKGFAGVMKKYHFKGLRASHG 193
Query: 265 VTKSHRRGGCIASGAGKARVYPG 287
+ HR GG R+ PG
Sbjct: 194 TSVMHRHGGSYGQNQDPGRILPG 216
>gi|92117098|ref|YP_576827.1| 50S ribosomal protein L3 [Nitrobacter hamburgensis X14]
gi|123083705|sp|Q1QN30.1|RL3_NITHX RecName: Full=50S ribosomal protein L3
gi|91799992|gb|ABE62367.1| LSU ribosomal protein L3P [Nitrobacter hamburgensis X14]
Length = 241
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ + R K
Sbjct: 2 RSGVIAQKVGMTRVFTDAGEHIPVTVLRLSNCQVLGH-------------RTSEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G+ + K G F + V PK+K+ F ++ D+++P G + A HF +F+
Sbjct: 49 LQLGSGARKTVYLPKAERGQFAVAKVEPKRKVAEFRVSEDSLIPVGAEIQADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G +V +GF G MKRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHRSIGS 146
>gi|114764144|ref|ZP_01443382.1| 50S ribosomal protein L3 [Pelagibaca bermudensis HTCC2601]
gi|114543296|gb|EAU46312.1| 50S ribosomal protein L3 [Roseovarius sp. HTCC2601]
Length = 280
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L++++G++ T++Q+ ++ R K
Sbjct: 3 RSGVIAKKVGMTRLFLEDGKQVPVTVLQLDGCQVV-------------AQRTSDKDGYTA 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA S +K G F + V PK+K+ F + + ++ G +TA H+ +F+
Sbjct: 50 VQLGAGSVKAKNVSKPMRGHFAIAKVEPKRKIAEFRVDAENLIGVGEEITADHYFEGQFV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GF G MKR F G+ ATHGV+ SHR G +V+ G
Sbjct: 110 DVSGTTIGKGFAGAMKRHNFGGLRATHGVSISHRSHGSTGQCQDPGKVFKG 160
>gi|163760799|ref|ZP_02167878.1| 50S ribosomal protein L3 [Hoeflea phototrophica DFL-43]
gi|162281843|gb|EDQ32135.1| 50S ribosomal protein L3 [Hoeflea phototrophica DFL-43]
Length = 223
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 63/121 (52%)
Query: 167 RGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLT 226
R E K + +GA +K G F + V PK KL F ++ D ++ G ++
Sbjct: 28 RTEEKNGYTAVQLGAGVAKVKNTSKAMRGNFAIANVEPKAKLVEFRVSSDNLIDVGAEIS 87
Query: 227 AAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYP 286
A+HF + +DV G+T +GF G MKR GF G+ ATHGV+ SHR G S +V+
Sbjct: 88 ASHFVAGQLVDVSGVTQGKGFAGAMKRHGFGGLRATHGVSVSHRSHGSTGSNQDPGKVWK 147
Query: 287 G 287
G
Sbjct: 148 G 148
>gi|365854812|ref|ZP_09394877.1| 50S ribosomal protein L3 [Acetobacteraceae bacterium AT-5844]
gi|363719761|gb|EHM03060.1| 50S ribosomal protein L3 [Acetobacteraceae bacterium AT-5844]
Length = 228
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 13/161 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTGLI K +G L+ +G T++ + ++ E+ G +LG
Sbjct: 7 RTGLIAKKLGMTRLFNDDGSTVPVTVLHLDQVRVVATRTAEK--------DGYDAVQLGF 58
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L P +K G F +GV K+ F + DA+L G L+A HF + +
Sbjct: 59 GLA-----KPKNVSKPNKGHFAKAGVEAPTKVAEFRVGADALLDVGAKLSANHFVKGQIV 113
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
DV G + +GF G MKRW F G+ ATHGV+ SHR G +
Sbjct: 114 DVTGTSKGKGFAGAMKRWNFSGLEATHGVSISHRSHGSTGN 154
>gi|388581970|gb|EIM22276.1| translation protein [Wallemia sebi CBS 633.66]
Length = 247
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 80/176 (45%), Gaps = 35/176 (19%)
Query: 112 TTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPK 171
+ SKRTGLIG G ++ + +K TL+++ N + + P
Sbjct: 3 SVGSKRTGLIGVKRGMSFIYNELNQKVPVTLIEIEKNRVNQLKKPSS------------- 49
Query: 172 RKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFR 231
T E+ + S + +L F +T + ++P T L +HF
Sbjct: 50 ------------------TNEHHFVQLQS----RNQLKEFPVTENGIIPINTELNVSHFI 87
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
P +F+D++G + +GF GVMKRW FKG+ A+HG + SHR G RV+PG
Sbjct: 88 PGQFVDIQGTSNGKGFAGVMKRWNFKGLRASHGTSISHRSQGSTGQNQDPGRVFPG 143
>gi|415727970|ref|ZP_11471573.1| 50S ribosomal protein L3 [Gardnerella vaginalis 6119V5]
gi|388065496|gb|EIK87978.1| 50S ribosomal protein L3 [Gardnerella vaginalis 6119V5]
Length = 216
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 81/174 (46%), Gaps = 19/174 (10%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKL 174
RT L+G+ +G +W +NG TLV+V N + +K + + +
Sbjct: 7 RTALLGRKLGMSQVWDENGFFVPVTLVEVATNVVTAVKTVESDGY--------------- 51
Query: 175 GCLL-VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPR 233
C + +G DP+ TK G F +GV P++ L A PG LTA F
Sbjct: 52 -CAVQLGYGQIDPTKVTKPLAGHFAKAGVTPRRHLAEVRTENAADYQPGQELTAELFAEG 110
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G T +GF G +KRWGFK THG K+ RR G + + A +R+ G
Sbjct: 111 SEVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKG 164
>gi|385724180|gb|AFI74113.1| ribosomal protein L3, partial [Bradyrhizobium sp. Cp5.3]
gi|385724188|gb|AFI74117.1| ribosomal protein L3, partial [Bradyrhizobium sp. da1.1]
gi|385724196|gb|AFI74121.1| ribosomal protein L3, partial [Bradyrhizobium sp. Lop14.22]
gi|385724254|gb|AFI74150.1| ribosomal protein L3, partial [Bradyrhizobium sp. mm18.1]
gi|385724336|gb|AFI74191.1| ribosomal protein L3, partial [Bradyrhizobium sp. ztm3]
Length = 144
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +G+ + K G F + V PK+++ F +T DAM+P G +
Sbjct: 25 HRTEEKNGYVALQLGSGARKTVYMPKAERGQFAVAKVEPKRRVEEFRVTADAMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 85 QADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR 129
>gi|379331974|gb|AFD02473.1| 50S ribosomal protein L3, partial [Bradyrhizobium liaoningense]
gi|385724256|gb|AFI74151.1| ribosomal protein L3, partial [Bradyrhizobium sp. Mm611]
gi|385724332|gb|AFI74189.1| ribosomal protein L3, partial [Bradyrhizobium sp. tc11]
gi|385724334|gb|AFI74190.1| ribosomal protein L3, partial [Bradyrhizobium sp. tc12]
gi|385724396|gb|AFI74221.1| ribosomal protein L3, partial [Bradyrhizobium sp. cfb17]
gi|385724398|gb|AFI74222.1| ribosomal protein L3, partial [Bradyrhizobium sp. cfb38]
gi|385724404|gb|AFI74225.1| ribosomal protein L3, partial [Bradyrhizobium sp. picf9]
Length = 144
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +G+ S K G F + V PK+++ F ++ DAM+P G +
Sbjct: 25 HRTEEKNGYVALQLGSGSRKTVYMPKAERGQFAVAKVEPKRRVEEFRVSADAMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 85 QADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR 129
>gi|406989326|gb|EKE09118.1| hypothetical protein ACD_16C00213G0041 [uncultured bacterium]
Length = 262
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTGLI + +G L + GE TL++V + +I E K
Sbjct: 2 RTGLIAEKVGMSRLLTEKGEHIPITLLKVDNCQVIATKTAE-------------KNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G ++ G F + V PK+K+ F ++ DA+L G ++ HF +++
Sbjct: 49 VELGVGQAKIKRTSRALRGHFAQAKVEPKRKVAEFRVSEDALLKVGDQISVNHFLTGQYV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQRQDPGKVFKG 159
>gi|385724284|gb|AFI74165.1| ribosomal protein L3, partial [Bradyrhizobium sp. crc16]
gi|385724306|gb|AFI74176.1| ribosomal protein L3, partial [Bradyrhizobium sp. ij16]
gi|385724308|gb|AFI74177.1| ribosomal protein L3, partial [Bradyrhizobium sp. ij4]
Length = 144
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +G+ + K G F + V PK+++ F +T DAM+P G +
Sbjct: 25 HRTEEKNGYVALQLGSGTRKTVYMPKAERGQFAVAKVEPKRRVEEFRVTADAMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 85 QADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR 129
>gi|114771269|ref|ZP_01448689.1| 50S ribosomal protein L3 [Rhodobacterales bacterium HTCC2255]
gi|114548194|gb|EAU51081.1| 50S ribosomal protein L3 [Rhodobacterales bacterium HTCC2255]
Length = 247
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K IG L+M++G++ T++Q+ + ++ E G +LG
Sbjct: 2 RSGVIAKKIGMTRLFMEDGKQVPVTVLQMENLQVVSQRTNE--------TDGYTAVQLGA 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ A+ ++ G F + V PK+K+ F ++ D ++ G + A HF + +
Sbjct: 54 GVAKAKRQSAAMR-----GHFAKAKVEPKRKIAEFRVSADNLIEVGEEIVANHFLDGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ ATHGV+ SHR G +V+ G
Sbjct: 109 DVSGTSIGKGFAGAMKRHNFGGLRATHGVSVSHRSHGSTGQCQEPGKVFKG 159
>gi|75675556|ref|YP_317977.1| 50S ribosomal protein L3 [Nitrobacter winogradskyi Nb-255]
gi|109893531|sp|Q3SSW6.1|RL3_NITWN RecName: Full=50S ribosomal protein L3
gi|74420426|gb|ABA04625.1| LSU ribosomal protein L3P [Nitrobacter winogradskyi Nb-255]
Length = 247
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 81/158 (51%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ + R K
Sbjct: 2 RSGVIAQKVGMTRVFTEAGEHIPVTVLKLSNCQVLGH-------------RTSEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G+ + K G F + V PK+K+ F ++ D+++P G + A HF +F+
Sbjct: 49 LQLGSGARKTVYMPKAERGQFAVAKVAPKRKVAEFRVSEDSLIPVGAEIQADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G +V +G+ G MKRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTSVGKGYAGGMKRWNFGGLRATHGVSISHRSIGS 146
>gi|385724482|gb|AFI74264.1| ribosomal protein L3, partial [Bradyrhizobium sp. la.2b]
Length = 144
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%)
Query: 165 PYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTP 224
+R E K L +G+ S K G F + V PK+++ F ++ DAM+P G
Sbjct: 24 AHRTEEKNGYVALQLGSGSRKTVYLPKAERGQFAVAKVEPKRQVEEFRVSADAMIPVGAE 83
Query: 225 LTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
+ A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 84 ILADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHR 129
>gi|418404903|ref|ZP_12978341.1| 50S ribosomal protein L3 [Sinorhizobium meliloti CCNWSX0020]
gi|359501167|gb|EHK73791.1| 50S ribosomal protein L3 [Sinorhizobium meliloti CCNWSX0020]
Length = 217
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 61/123 (49%)
Query: 165 PYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTP 224
+R E K + +GA K G F + V PK KL F ++ D ++ G
Sbjct: 26 SHRTEEKNGYTAVQLGAGRSKVKNTPKAMRGHFAAASVEPKAKLVEFRVSADNLIDIGAE 85
Query: 225 LTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARV 284
LTA HF + +DV G T+ +GF G +KR F G+ ATHGV+ SHR G S RV
Sbjct: 86 LTAGHFVAGQLVDVTGTTIGKGFAGAIKRHNFGGLRATHGVSVSHRSHGSTGSNQDPGRV 145
Query: 285 YPG 287
+ G
Sbjct: 146 WKG 148
>gi|385724252|gb|AFI74149.1| ribosomal protein L3, partial [Bradyrhizobium sp. La5-8]
gi|385724312|gb|AFI74179.1| ribosomal protein L3, partial [Bradyrhizobium sp. ic7]
Length = 144
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +G+ S K G F + V PK+++ F ++ DAM+P G +
Sbjct: 25 HRTEEKNGYVALQLGSGSRKTVYMPKAERGQFAVAKVEPKRRVEEFRVSQDAMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 85 QADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR 129
>gi|385724402|gb|AFI74224.1| ribosomal protein L3, partial [Bradyrhizobium sp. picf10]
Length = 144
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +G+ S K G F + V PK+++ F ++ DAM+P G +
Sbjct: 25 HRTEEKNGYVALQLGSGSRKTIYMPKAERGQFAVAKVEPKRRVEEFRVSADAMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 85 QADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR 129
>gi|85715131|ref|ZP_01046115.1| 50S ribosomal protein L3 [Nitrobacter sp. Nb-311A]
gi|85698046|gb|EAQ35919.1| 50S ribosomal protein L3 [Nitrobacter sp. Nb-311A]
Length = 247
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 81/158 (51%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ + R K
Sbjct: 2 RSGVIAQKVGMTRVFTEAGEHIPVTVLKLSNCQVLGH-------------RTSEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G+ + K G F + V PK+K+ F ++ D+++P G + A HF +F+
Sbjct: 49 LQLGSGARKTVYMPKAERGQFAVAKVEPKRKVAEFRVSQDSLIPVGAEIQADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G +V +G+ G MKRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTSVGKGYAGGMKRWNFGGLRATHGVSISHRSIGS 146
>gi|379331808|gb|AFD02390.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. ApB16]
gi|379331816|gb|AFD02394.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. ApT12]
gi|379331832|gb|AFD02402.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. DcE2.8]
gi|379331836|gb|AFD02404.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. DcE3.6]
gi|379331844|gb|AFD02408.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. Dp6.5]
gi|379331866|gb|AFD02419.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. Lppb2]
gi|379331888|gb|AFD02430.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. cvr1]
gi|379331896|gb|AFD02434.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. cfs4]
gi|385724290|gb|AFI74168.1| ribosomal protein L3, partial [Bradyrhizobium sp. cri5]
gi|385724314|gb|AFI74180.1| ribosomal protein L3, partial [Bradyrhizobium sp. lor5]
gi|385724320|gb|AFI74183.1| ribosomal protein L3, partial [Bradyrhizobium sp. lus17]
gi|385724350|gb|AFI74198.1| ribosomal protein L3, partial [Bradyrhizobium sp. mg1.1]
gi|385724370|gb|AFI74208.1| ribosomal protein L3, partial [Bradyrhizobium sp. ppau2.18]
gi|385724374|gb|AFI74210.1| ribosomal protein L3, partial [Bradyrhizobium sp. Ppau3-41]
gi|385724378|gb|AFI74212.1| ribosomal protein L3, partial [Bradyrhizobium sp. ppau4.8]
gi|385724480|gb|AFI74263.1| ribosomal protein L3, partial [Bradyrhizobium sp. la.1a]
Length = 144
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +G+ S K G F + V PK+++ F ++ DAM+P G +
Sbjct: 25 HRTEEKNGYVALQLGSGSRKTVYMPKAERGQFAVAKVEPKRQVEEFRVSADAMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 85 LADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHR 129
>gi|349685846|ref|ZP_08896988.1| 50S ribosomal protein L3 [Gluconacetobacter oboediens 174Bp2]
Length = 216
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 18/162 (11%)
Query: 130 LWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLY 189
L+ ++G T++QV D ++ E R Y + +G+
Sbjct: 4 LFKEDGTHVPVTVLQVDDLQVVDVRTTE-----RDGYT--------AVQLGSGKAKVKNV 50
Query: 190 TKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQG 249
+K G F + V PKKKL F + DA+L G L+A HF + +DV G + +GF G
Sbjct: 51 SKPNRGHFAKAKVEPKKKLAEFRVADDAVLEVGASLSATHFVVGQKVDVTGTSKGKGFAG 110
Query: 250 VMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQ 291
MKRW F G+ ATHGV+ SHR G + R PG V +
Sbjct: 111 AMKRWNFAGLEATHGVSISHRSHGSTGN-----RQDPGKVFK 147
>gi|348685168|gb|EGZ24983.1| Mitochondrial/chloroplast ribosomal protein L3 [Phytophthora sojae]
Length = 237
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 23/152 (15%)
Query: 136 EKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCG 195
E+C+ T V+ D H + +LG L A++ +K G
Sbjct: 20 EECQVTQVKTADRHGFNAL------------------QLGVGLRKAKN-----VSKPVLG 56
Query: 196 LFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWG 255
+GVP K++L F ++ DA+LP GT L+A HF +F+DV G++ +GFQGVMK
Sbjct: 57 HLAKAGVPAKRQLQEFRVSEDALLPLGTTLSALHFNAGQFVDVCGISKGKGFQGVMKLHN 116
Query: 256 FKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F G PA+HG +K+ R G +V+ G
Sbjct: 117 FAGQPASHGNSKTQRHMGSTGQCQDPGKVFKG 148
>gi|385724276|gb|AFI74161.1| ribosomal protein L3, partial [Bradyrhizobium sp. ce1]
Length = 144
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 60/105 (57%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +GA + K G F + V PK+++ F ++ DAM+P G +
Sbjct: 25 HRTEEKNGYVALQLGAGTRKTVYMPKAERGQFAVAKVEPKRQVEEFRVSADAMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G ++ +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 85 QADHFVVGQFVDVTGTSIGKGFAGGMKRWNFGGLRATHGVSISHR 129
>gi|359398247|ref|ZP_09191271.1| large subunit ribosomal protein L3 [Novosphingobium
pentaromativorans US6-1]
gi|357600665|gb|EHJ62360.1| large subunit ribosomal protein L3 [Novosphingobium
pentaromativorans US6-1]
Length = 248
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 18/172 (10%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
+I K +G L+ ++G T++ + D ++ +R Y + +
Sbjct: 1 MIAKKVGMTRLFQEDGRHVPVTVLALEDCQVVSV-----RTADRDGYV--------AVQL 47
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
GA K F + VP K ++ F + DA+L G+ + A+HF P + +DV
Sbjct: 48 GAGEAKQKNVAKPQREHFAKAEVPLKMRVAEFRVADDALLDVGSTIAASHFVPGQLVDVA 107
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQ 291
G T +GF G MKRWGF G+ ATHGV+ SHR G + R PG V +
Sbjct: 108 GHTQGKGFAGAMKRWGFGGLRATHGVSLSHRSHGSTGN-----RQDPGKVFK 154
>gi|385724184|gb|AFI74115.1| ribosomal protein L3, partial [Bradyrhizobium sp. Dm4.3]
gi|385724190|gb|AFI74118.1| ribosomal protein L3, partial [Bradyrhizobium sp. Dr12.2]
gi|385724192|gb|AFI74119.1| ribosomal protein L3, partial [Bradyrhizobium sp. Ec3.3]
gi|385724194|gb|AFI74120.1| ribosomal protein L3, partial [Bradyrhizobium sp. Ih3.3]
gi|385724210|gb|AFI74128.1| ribosomal protein L3, partial [Bradyrhizobium sp. Pe4]
gi|385724214|gb|AFI74130.1| ribosomal protein L3, partial [Bradyrhizobium sp. Rp2.1]
gi|385724232|gb|AFI74139.1| ribosomal protein L3, partial [Bradyrhizobium sp. Tpar1.1]
gi|385724236|gb|AFI74141.1| ribosomal protein L3, partial [Bradyrhizobium sp. Dr4a.7]
gi|385724238|gb|AFI74142.1| ribosomal protein L3, partial [Bradyrhizobium sp. da4.6]
gi|385724258|gb|AFI74152.1| ribosomal protein L3, partial [Bradyrhizobium sp. Mm623]
gi|385724264|gb|AFI74155.1| ribosomal protein L3, partial [Bradyrhizobium sp. pmc3]
Length = 144
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +GA + K G F + V PK+++ F ++ DAM+P G +
Sbjct: 25 HRTEEKNGYVALQLGAGTRKTVYMPKAERGQFAVAKVEPKRQVEEFRVSADAMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 85 LADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR 129
>gi|385724358|gb|AFI74202.1| ribosomal protein L3, partial [Bradyrhizobium sp. mg1.24]
Length = 144
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +G+ S K G F + V PK+++ F ++ DAM+P G +
Sbjct: 25 HRTEEKNGYVALQLGSGSRKTVYMPKAERGQFAVAKVEPKRRVEEFRVSADAMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 85 LADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR 129
>gi|385724484|gb|AFI74265.1| ribosomal protein L3, partial [Bradyrhizobium sp. lfta1]
gi|385724486|gb|AFI74266.1| ribosomal protein L3, partial [Bradyrhizobium sp. lfta11]
gi|385724488|gb|AFI74267.1| ribosomal protein L3, partial [Bradyrhizobium sp. lfta7]
Length = 144
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +G+ S K G F + V PK+++ F ++ DAM+P G +
Sbjct: 25 HRTEEKNGYVALQLGSGSRKTVYMPKAERGQFAVAKVEPKRQVEEFRVSQDAMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK 281
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR I S G+
Sbjct: 85 LADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHR---SIGSTGGR 137
>gi|304321440|ref|YP_003855083.1| 50S ribosomal protein L3 [Parvularcula bermudensis HTCC2503]
gi|303300342|gb|ADM09941.1| 50S ribosomal protein L3 [Parvularcula bermudensis HTCC2503]
Length = 309
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 107 QPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPY 166
QPL RTG+I K +G ++ G T+V + + ++ +
Sbjct: 14 QPLPAQRLGARTGVIAKKLGMTRVYTAEGTHVPCTVVSLENCQVVSH------------- 60
Query: 167 RGEPKRKLGCLLVGA-----ESGDPSL--YTKEYCGLFKNSGVPPKKKLCRFIITPDAML 219
R E + L +GA G+ L +K G F + V PK+KL F + D ++
Sbjct: 61 RTEERDGYSALQLGAGEYLNRKGEAKLGRVSKAARGHFAKANVTPKRKLAEFRVETDYLI 120
Query: 220 PPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGA 279
G LTA H+ P + +DV G ++ +GF G MKR F G+ A+HGV+ SHR G
Sbjct: 121 EIGASLTAEHYVPGQRVDVVGTSIGKGFAGGMKRHNFGGLRASHGVSISHRSHGSTGQCQ 180
Query: 280 GKARVYPG 287
+V+ G
Sbjct: 181 DPGKVFKG 188
>gi|154245623|ref|YP_001416581.1| 50S ribosomal protein L3 [Xanthobacter autotrophicus Py2]
gi|226730590|sp|A7IFY1.1|RL3_XANP2 RecName: Full=50S ribosomal protein L3
gi|154159708|gb|ABS66924.1| ribosomal protein L3 [Xanthobacter autotrophicus Py2]
Length = 241
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T+++V ++ +R K
Sbjct: 2 RSGVIAQKVGMTRIFTDAGEHVPVTVLKVESCQVV-------------AHRTLDKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA P T+ G F + V PK KL F + +A++P G +TA HF +++
Sbjct: 49 VQLGAGRRKPKNVTRAERGHFAVAQVEPKHKLAEFRVPEEALIPVGAEITADHFVVGQYV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G T+ +GF G MKR F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTTIGKGFAGGMKRHNFGGLRATHGVSISHRSIGS 146
>gi|385724260|gb|AFI74153.1| ribosomal protein L3, partial [Bradyrhizobium sp. muu.1a]
gi|385724294|gb|AFI74170.1| ribosomal protein L3, partial [Bradyrhizobium sp. cp10]
gi|385724298|gb|AFI74172.1| ribosomal protein L3, partial [Bradyrhizobium sp. dep32]
gi|385724354|gb|AFI74200.1| ribosomal protein L3, partial [Bradyrhizobium sp. mg1.17]
gi|385724372|gb|AFI74209.1| ribosomal protein L3, partial [Bradyrhizobium sp. ppau2.5]
Length = 144
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +G+ S K G F + V PK+++ F ++ DAM+P G +
Sbjct: 25 HRTEEKNGYVALQLGSGSRKTVYMPKAERGQFAVAKVEPKRQVEEFRVSQDAMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 85 LADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHR 129
>gi|385724268|gb|AFI74157.1| ribosomal protein L3, partial [Bradyrhizobium sp. Pp3a.1]
Length = 144
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +GA + K G F + V PK+++ F ++ DAM+P G +
Sbjct: 25 HRTEEKNGYVALQLGAGTRKTVYMPKAERGQFAVAKVEPKRQVEEFRVSQDAMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK 281
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR I S G+
Sbjct: 85 LADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHR---SIGSTGGR 137
>gi|238879545|gb|EEQ43183.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 293
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 6/98 (6%)
Query: 196 LFKNSGVPPKKKLCRFII------TPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQG 249
+F+ + V PK+K+ F I ++P GT LTA +F + +DV+G+T +GF G
Sbjct: 132 IFETAKVSPKQKIGEFKIRSIDNDIESKLIPVGTELTADYFSVGQKVDVKGVTKGKGFAG 191
Query: 250 VMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
VMKRWGF G ATHG +K+HR G RV+PG
Sbjct: 192 VMKRWGFSGGRATHGTSKAHRTPGATGGNQNPGRVFPG 229
>gi|90424937|ref|YP_533307.1| 50S ribosomal protein L3 [Rhodopseudomonas palustris BisB18]
gi|109893548|sp|Q211E8.1|RL3_RHOPB RecName: Full=50S ribosomal protein L3
gi|90106951|gb|ABD88988.1| LSU ribosomal protein L3P [Rhodopseudomonas palustris BisB18]
Length = 243
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 80/154 (51%), Gaps = 13/154 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ + R K
Sbjct: 2 RSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQVLGH-------------RTTEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G+ + K G F + V PK+K+ F ++ DA++P G + A HF +F+
Sbjct: 49 MQLGSGTRKTVYLPKAERGQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
DV G +V +GF G +KRW F G+ ATHGV+ SHR
Sbjct: 109 DVTGTSVGKGFAGGIKRWNFGGLRATHGVSVSHR 142
>gi|294675856|ref|YP_003576471.1| 50S ribosomal protein L3 [Rhodobacter capsulatus SB 1003]
gi|294474676|gb|ADE84064.1| 50S ribosomal protein L3 [Rhodobacter capsulatus SB 1003]
Length = 238
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L++++G++ T++ ++DN ++ + + +
Sbjct: 2 RSGVIAKKLGMTRLFLEDGKQVPVTVL-LLDN--LQVVAQRTVETDGYT----------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA T G F + V PK+KLC F ++P+ ++ G ++A H+ + +
Sbjct: 49 VQLGAGEAKAKRTTAAMRGHFAKANVAPKRKLCEFRVSPENLIDVGAEISAEHYLAGQHV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D+ G ++ +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DIAGTSIGKGFAGAMKRHNFGGLRASHGVSVSHRSHGSTGQCQDPGKVFKG 159
>gi|19114797|ref|NP_593885.1| mitochondrial ribosomal protein subunit L9 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74665370|sp|Q9P6P6.1|RM09_SCHPO RecName: Full=54S ribosomal protein L9, mitochondrial; Flags:
Precursor
gi|7708596|emb|CAB90144.1| mitochondrial ribosomal protein subunit L9 (predicted)
[Schizosaccharomyces pombe]
Length = 259
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 171 KRKLGCLLVGAESG--DPSLYTKEYCGLFKNSGVPPKKKLCRFII-TPDAMLPPGTPLTA 227
K K G V SG P TK G F + + PK + F + ++ PGT T
Sbjct: 83 KEKHGYYAVQVGSGIRKPKSITKAEQGNFFSHNIYPKMHVREFRVRDASGLVSPGTIFTT 142
Query: 228 AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+F+P++++DV+G+T +GF GVMKRWGF G A+HG + SHR G +RV PG
Sbjct: 143 DYFKPKQYVDVKGITKGKGFAGVMKRWGFSGGNASHGASLSHRTPGSTGQNTTPSRVLPG 202
>gi|402849275|ref|ZP_10897515.1| LSU ribosomal protein L3p (L3e) [Rhodovulum sp. PH10]
gi|402500588|gb|EJW12260.1| LSU ribosomal protein L3p (L3e) [Rhodovulum sp. PH10]
Length = 247
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ +R + K
Sbjct: 2 RSGVIAQKVGMTRVYTDAGEHVPVTVLRLANCQVV-------------AHRTKEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA P K G F + V PK+++ F + ++P G +TA HF +F+
Sbjct: 49 MQLGAGVRKPKNTPKAERGHFAVAKVEPKREVVEFRVDDGGLIPVGAEITADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G +V +G+ G MKRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTSVGKGYAGPMKRWNFGGLRATHGVSISHRSHGS 146
>gi|359407985|ref|ZP_09200458.1| 50S ribosomal protein L3, bacterial [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356677051|gb|EHI49399.1| 50S ribosomal protein L3, bacterial [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 268
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + IG ++ GE T++++ D ++ E R Y
Sbjct: 2 RSGVIARKIGMTRVFNDAGEHIPVTVLKLDDVQVVSQKTAE-----RDGYT--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +GA S +K G F + V PK+KL F ++ DAM+ G +HF + +
Sbjct: 49 LQLGAGSAKVKNVSKALRGHFAKASVLPKRKLAEFRVSEDAMVEVGATFGVSHFIAGQRV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D G++ +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DAVGISQGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 159
>gi|431805756|ref|YP_007232657.1| 50S ribosomal protein L3 [Liberibacter crescens BT-1]
gi|430799731|gb|AGA64402.1| LSU ribosomal protein L3p (L3e) [Liberibacter crescens BT-1]
Length = 215
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 13/169 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++ + DN + I F+ N G +LG
Sbjct: 2 RSGVIAQKLGMTCVYNVKGEHIPVTVLHI-DN--CRVIAHRTFQKN-----GYFAVQLGA 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
++ S+ G+F N+ V PK K+ F ++ D +L G L+ +HF + +
Sbjct: 54 GFAKVKNTSKSMR-----GVFLNANVEPKAKVVEFRVSQDQLLKIGYLLSPSHFALGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
DV G T+ +GF GVMKR F G+ ATHGV+ SHR G RV+
Sbjct: 109 DVSGFTIGKGFAGVMKRHNFGGLRATHGVSLSHRSPGSTGCRQDPGRVF 157
>gi|385724230|gb|AFI74138.1| ribosomal protein L3, partial [Bradyrhizobium sp. tri9]
Length = 144
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +GA + K G F + V PK+++ F +T D M+P G +
Sbjct: 25 HRTEEKNGYVALQLGAGTRKTVYLPKAERGQFAVAKVEPKRQVEEFRVTADQMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK 281
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR I S G+
Sbjct: 85 QADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHR---SIGSTGGR 137
>gi|68474538|ref|XP_718642.1| likely mitochondrial ribosomal protein (E. coli L3) [Candida
albicans SC5314]
gi|46440421|gb|EAK99727.1| likely mitochondrial ribosomal protein (E. coli L3) [Candida
albicans SC5314]
Length = 293
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 6/98 (6%)
Query: 196 LFKNSGVPPKKKLCRFII------TPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQG 249
+F+ + V PK+K+ F I ++P GT LTA +F + +DV+G+T +GF G
Sbjct: 132 IFETAKVSPKQKIGEFKIRSIDNDIESKLIPVGTELTADYFSVGQKVDVKGVTKGKGFAG 191
Query: 250 VMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
VMKRWGF G ATHG +K+HR G RV+PG
Sbjct: 192 VMKRWGFSGGRATHGTSKAHRTPGATGGNQNPGRVFPG 229
>gi|241957878|ref|XP_002421658.1| mitochondrial 54S ribosomal protein YmL9 [Candida dubliniensis
CD36]
gi|223645003|emb|CAX39595.1| 60s ribosomal protein, mitochondrial precursor, putative [Candida
dubliniensis CD36]
Length = 293
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 6/98 (6%)
Query: 196 LFKNSGVPPKKKLCRFII------TPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQG 249
+F+ + V PK+K+ F I ++P GT LTA +F + +DV+G+T +GF G
Sbjct: 133 IFETAKVSPKQKIGEFKIRSIDNDIESKLIPVGTELTADYFTVGQKVDVKGITKGKGFAG 192
Query: 250 VMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
VMKRWGF G ATHG +K+HR G RV+PG
Sbjct: 193 VMKRWGFSGGRATHGTSKAHRTPGATGGNQNPGRVFPG 230
>gi|308178136|ref|YP_003917542.1| 50S ribosomal protein L3 [Arthrobacter arilaitensis Re117]
gi|307745599|emb|CBT76571.1| 50S ribosomal protein L3 [Arthrobacter arilaitensis Re117]
Length = 216
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 78/177 (44%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
+T + GL+G +G +W N T+VQ N + K I E R Y
Sbjct: 1 MTATRNFKGLLGTKLGMTQVWDSNNNLIPVTVVQADSNVVTKLINEE-----RDGYT--- 52
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
+ +G DP TK G F+ +GV P++ L A G L+ F
Sbjct: 53 -----AVQIGYGQIDPRKVTKPLAGHFEAAGVTPRRHLVELRTADAAEYTAGQELSVEVF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +DV G + +GF GVMKR F G+ A+HG K+HR+ G I + RV+ G
Sbjct: 108 EAGQKVDVVGTSKGKGFAGVMKRHNFHGVGASHGAHKNHRKPGSIGGASTPGRVFRG 164
>gi|83949796|ref|ZP_00958529.1| Ribosomal protein L3 [Roseovarius nubinhibens ISM]
gi|83837695|gb|EAP76991.1| Ribosomal protein L3 [Roseovarius nubinhibens ISM]
Length = 268
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 13/158 (8%)
Query: 130 LWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLY 189
L+M++G++ T++Q+ ++ PE + +GA S
Sbjct: 4 LFMEDGKQIPVTVLQLDKLQVVAQRTPEA-------------HGYSAVQLGAGSIKAKRV 50
Query: 190 TKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQG 249
+K G F + V PK+K+ F + P+ ++ G +TA H+ +F+DV G ++ +GF G
Sbjct: 51 SKAMRGHFSIAKVEPKRKIAEFRVAPENLINVGEEITADHYFEGQFVDVSGTSIGKGFAG 110
Query: 250 VMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
MKR F G+ ATHGV+ SHR G RV+ G
Sbjct: 111 AMKRHNFGGLRATHGVSISHRSHGSTGQCQDPGRVFKG 148
>gi|328872429|gb|EGG20796.1| ribosomal protein L3 [Dictyostelium fasciculatum]
Length = 333
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 14/173 (8%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
+ R G IGK +G +++ + T++++ DN +++ RK G ++
Sbjct: 62 THRVGAIGKKLGMTTVYVDH-VAIPVTVIELPDNQVVQV--------KRKVNDGSNAVQV 112
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
G + ++ +L G F + VPPK+ + F +T + GT + A HF P +
Sbjct: 113 GAGEIKLKNIGGTLK-----GHFAKADVPPKRVVMEFKVTKGGFMDVGTSIDARHFVPGQ 167
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ V+G + +GF G MKRW F G+ ATHGV+K+HR G RV+ G
Sbjct: 168 LVKVQGTSTGKGFAGGMKRWNFSGLLATHGVSKTHRSIGSTGCRQTPGRVFKG 220
>gi|385724202|gb|AFI74124.1| ribosomal protein L3, partial [Bradyrhizobium sp. Ma9.4]
Length = 144
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 60/105 (57%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R + K L +G+ S K G F + V PK+K+ F ++ DA++P G +
Sbjct: 25 HRTKEKNGYVALQLGSGSRKTVYMPKAERGQFAVAKVEPKRKVAEFRVSEDALIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 85 QADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR 129
>gi|115400825|ref|XP_001216001.1| mitochondrial 54S ribosomal protein YmL9 [Aspergillus terreus
NIH2624]
gi|114191667|gb|EAU33367.1| 60S ribosomal protein L9, mitochondrial precursor [Aspergillus
terreus NIH2624]
Length = 335
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTP 224
++ P+ + VGA PS TK G F GV PK+ + F + +A +LP G
Sbjct: 151 HKTRPQHGYYAVQVGAGWKHPSNVTKSLLGHFSAHGVSPKRHVFEFRVRDEAGLLPVGRD 210
Query: 225 LTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIA-SGAGKAR 283
+ A+ FR +F+D R T +GF GVMKR GF G +HGV+ +HR G S G +R
Sbjct: 211 IPASWFREGQFVDARSTTKGKGFAGVMKRHGFGGQDRSHGVSLTHRSMGSAGPSQGGGSR 270
Query: 284 VYPG 287
VYPG
Sbjct: 271 VYPG 274
>gi|260425273|ref|ZP_05779253.1| 50S ribosomal protein L3 [Citreicella sp. SE45]
gi|260423213|gb|EEX16463.1| 50S ribosomal protein L3 [Citreicella sp. SE45]
Length = 280
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++Q+ ++ R K
Sbjct: 3 RSGVIAKKVGMTRLFMEDGKQIPVTVLQLDGCQVV-------------AQRTADKDGYTA 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA S + G F + V PK+K+ F + + ++ G +TA H+ +F+
Sbjct: 50 VQLGAGSIKAKNVSNPMRGHFAVAKVEPKRKIAEFRVDAENLIRVGEEITADHYFEGQFV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 110 DVSGTTIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 160
>gi|149184311|ref|ZP_01862629.1| 50S ribosomal protein L3 [Erythrobacter sp. SD-21]
gi|148831631|gb|EDL50064.1| 50S ribosomal protein L3 [Erythrobacter sp. SD-21]
Length = 285
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 14/172 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++ + D + + +R Y G
Sbjct: 2 RTGVIAKKVGMTRLFQEDGRHVPVTVLSLEDCQVTAHRTE-----DRDGYYG-------- 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRF-IITPDAMLPPGTPLTAAHFRPREF 235
+ VG+ K F + V K K+ F + + +A+LP G ++A HF +
Sbjct: 49 VQVGSGEAKQKNVNKPQREAFAKAEVALKMKVGEFRVDSEEALLPVGARISAEHFVAGQK 108
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+D+ G T +GF G MKRWGF G+ ATHGV+ SHR G + RV+ G
Sbjct: 109 VDITGHTQGKGFAGAMKRWGFGGLRATHGVSISHRSHGSTGNRQDPGRVFKG 160
>gi|407788309|ref|ZP_11135441.1| 50S ribosomal protein L3 [Celeribacter baekdonensis B30]
gi|407197590|gb|EKE67644.1| 50S ribosomal protein L3 [Celeribacter baekdonensis B30]
Length = 245
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++Q+ + ++ R K
Sbjct: 3 RSGIIAKKVGMTRLFMEDGKQIPVTVLQLENLQVV-------------AQRTVDKDGYTA 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + + G F + V PK+K+ F + ++ G ++A H+ +F+
Sbjct: 50 VQLGAGNAKAKRTSAAMRGHFAAANVAPKRKVAEFRVDEANLIEVGAEISAEHYFEGQFV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 110 DVSGTSIGKGFAGAMKRHNFGGLRASHGVSVSHRSHGSTGQCQDPGKVFKG 160
>gi|255263954|ref|ZP_05343296.1| 50S ribosomal protein L3 [Thalassiobium sp. R2A62]
gi|255106289|gb|EET48963.1| 50S ribosomal protein L3 [Thalassiobium sp. R2A62]
Length = 292
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G ++ ++G++ T++Q+ ++ R +
Sbjct: 3 RSGIIAKKVGMTRIFQEDGKQIPVTVLQLDKLQVV-------------AQRTQETDGYTA 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + ++ G F + V PK+++ F + + ++ G +TA H+ +F+
Sbjct: 50 VQLGAGTAKVKRVSQAMRGHFAAAKVEPKRRVAEFRVAAENLINVGEEITANHYFEGQFV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GFQG MKR F G+ ATHGV+ SHR G +V+ G
Sbjct: 110 DVSGTSIGKGFQGAMKRHNFGGLRATHGVSISHRSHGSTGQCQDPGKVFKG 160
>gi|412992274|emb|CCO19987.1| 50S ribosomal protein L3 [Bathycoccus prasinos]
Length = 402
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 82/202 (40%), Gaps = 43/202 (21%)
Query: 116 KRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLG 175
KR GLI G W + G++ T++ + DN I++ + E
Sbjct: 130 KRPGLIAVKAGMTCDWDEWGKRHPLTVLWIDDNQIVQV-------------KTEENEGYS 176
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAM----------------- 218
+ VG+ P TK G F + VP K+ L F +TP M
Sbjct: 177 AVQVGSGYKKPKSVTKPELGHFIKAQVPIKRFLSEFRVTPPTMKMYKEDEEGDDDDDNNN 236
Query: 219 -------------LPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGV 265
G L A HF +++DV+G+T +GF G MKRWGF G PA+HG
Sbjct: 237 LDVETVEIKGAREYKVGEELNANHFFAGQYVDVQGVTSGKGFAGPMKRWGFSGQPASHGN 296
Query: 266 TKSHRRGGCIASGAGKARVYPG 287
TK HR G I RV+ G
Sbjct: 297 TKKHRAHGSIGQCQDPGRVFKG 318
>gi|422012924|ref|ZP_16359560.1| 50S ribosomal protein L3 [Actinomyces georgiae F0490]
gi|394751866|gb|EJF35605.1| 50S ribosomal protein L3 [Actinomyces georgiae F0490]
Length = 221
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 13/168 (7%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
L+G+ IG +W +G T+VQV N ++ + EE G +LG +
Sbjct: 15 LLGRKIGMTQVWDADGRLVPLTVVQVGTN-VVTQVRTEEVD-------GYSAIQLGFGEI 66
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
DP TK G F +GV P++ L + G L A+ F + +DV
Sbjct: 67 -----DPRKVTKPLQGHFAKAGVAPRRHLAEVRTSEHDSYEVGQELDASTFEAGQSVDVS 121
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T +GF GVMKR GF G+ A+HG ++HR+ G I + A R++ G
Sbjct: 122 GNTKGKGFAGVMKRHGFAGVSASHGAHRNHRKPGSIGACATPGRIFKG 169
>gi|379331868|gb|AFD02420.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. Lppb8]
Length = 144
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 195 GLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRW 254
G F S V PK+K+ F ++ DA++P G + A HF +F+DV G +V +GF G MKRW
Sbjct: 54 GQFAVSKVEPKRKVTEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSVGKGFAGGMKRW 113
Query: 255 GFKGMPATHGVTKSHRRGGCIASGAGK 281
F G+ ATHGV+ SHR I S G+
Sbjct: 114 NFGGLRATHGVSVSHR---SIGSTGGR 137
>gi|296447530|ref|ZP_06889452.1| 50S ribosomal protein L3 [Methylosinus trichosporium OB3b]
gi|296254918|gb|EFH02023.1| 50S ribosomal protein L3 [Methylosinus trichosporium OB3b]
Length = 237
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ ++ + E+ G +LG
Sbjct: 2 RSGVIAQKVGMTRVFTEAGEHVPVTVLKLDGCQVVAHRTMEQ--------NGYTAVQLGI 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
++ +K G F + V PK KL F + +LP G +TA HF +F+
Sbjct: 54 GRAKVKN-----VSKAERGRFAIAKVEPKLKLAEFRVAESELLPVGAEITADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G ++ +GF G MKRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTSLGKGFAGAMKRWNFGGLRATHGVSVSHRSHGS 146
>gi|399525040|ref|ZP_10765519.1| 50S ribosomal protein L3 [Atopobium sp. ICM58]
gi|398373572|gb|EJN51488.1| 50S ribosomal protein L3 [Atopobium sp. ICM58]
Length = 221
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 13/168 (7%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
L+G+ IG +W +G T+VQV N ++ + EE G +LG +
Sbjct: 15 LLGRKIGMTQVWDADGHLVPLTVVQVGTN-VVTQVRTEEVD-------GYSAIQLGFGEI 66
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
D TK G F+ +GV P++ L + G L AA F + +DV
Sbjct: 67 -----DSRKVTKPLQGHFEKAGVAPRRHLAEVRTSEHDSYELGQELDAATFEAGQSVDVS 121
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T +GF GVMKR GF G+ A+HG ++HR+ G I + A R++ G
Sbjct: 122 GTTKGKGFAGVMKRHGFAGVSASHGAHRNHRKPGSIGACATPGRIFKG 169
>gi|385724414|gb|AFI74230.1| ribosomal protein L3, partial [Bradyrhizobium sp. uim17]
gi|385724424|gb|AFI74235.1| ribosomal protein L3, partial [Bradyrhizobium sp. rbc6]
Length = 144
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 60/105 (57%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R + K L +GA + K G F + V PK+K+ F ++ DA++P G +
Sbjct: 25 HRTKEKNGYVALQLGAGTRKTVYLPKAERGQFAVAKVEPKRKVTEFRVSEDALIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 85 QADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR 129
>gi|320094580|ref|ZP_08026346.1| 50S ribosomal protein L3 [Actinomyces sp. oral taxon 178 str.
F0338]
gi|319978495|gb|EFW10072.1| 50S ribosomal protein L3 [Actinomyces sp. oral taxon 178 str.
F0338]
Length = 221
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 13/168 (7%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
L+G+ IG +W +G T+VQV N ++ + EE G +LG +
Sbjct: 15 LLGRKIGMTQVWDADGRLVPLTVVQVGTN-VVTQVRTEEVD-------GYSAIQLGFGEI 66
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
DP TK G F +GV P++ L + G L A+ F + +DV
Sbjct: 67 -----DPRKVTKPLQGHFAKAGVAPRRHLAEVRTSEHDSYEVGQELDASTFEAGQSVDVS 121
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T +GF GVMKR GF G+ A+HG ++HR+ G I + A R++ G
Sbjct: 122 GNTKGKGFAGVMKRHGFAGVSASHGAHRNHRKPGSIGACATPGRIFKG 169
>gi|148273801|ref|YP_001223362.1| 50S ribosomal protein L3 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|212288254|sp|A5CUB3.1|RL3_CLAM3 RecName: Full=50S ribosomal protein L3
gi|147831731|emb|CAN02700.1| 50S ribosomal protein L3 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 217
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 13/170 (7%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
TGL+G +G +W +N + T+VQ+ N + + PE G +
Sbjct: 9 TGLLGTKLGMTQVWDENNKLIPVTVVQITPNVVTQVRTPEV-------------DGYGAI 55
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
+ DP K G F +GV P++ L A G +T F P +D
Sbjct: 56 QIAYGQIDPRKADKPSTGHFDKAGVTPRRHLTEVRTADFAEYALGQEITVGAFEPGTKVD 115
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G + +GF GVMKR FKG+ A+HG ++HR+ G I + + +RV+ G
Sbjct: 116 VVGTSKGKGFAGVMKRHNFKGVSASHGSHRNHRKPGSIGASSTPSRVFKG 165
>gi|402771844|ref|YP_006591381.1| 50S ribosomal protein L3 [Methylocystis sp. SC2]
gi|401773864|emb|CCJ06730.1| 50S ribosomal protein L3 [Methylocystis sp. SC2]
Length = 255
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ ++ R + K
Sbjct: 12 RSGVIAQKVGMTRIFTEAGEHVPVTVLKLDGCQVV-------------AQRTQEKNGYTA 58
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G +K F + V PK KL F + + +LP G +TA HF +F+
Sbjct: 59 VQLGIGRAKVKNVSKAERTRFAAASVEPKLKLAEFRVKEEELLPIGAEITADHFVVGQFV 118
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G + +GF G MKRWGF G+ ATHGV+ SHR G
Sbjct: 119 DVTGTSTGKGFAGPMKRWGFGGLRATHGVSVSHRSHGS 156
>gi|448082975|ref|XP_004195274.1| Piso0_005824 [Millerozyma farinosa CBS 7064]
gi|359376696|emb|CCE87278.1| Piso0_005824 [Millerozyma farinosa CBS 7064]
Length = 274
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 15/172 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R GL+G G + + GE+ T++++ + ++ + E N K K
Sbjct: 60 RPGLLGVKRGMITWFTEKGEQLAATVIEIDNCEVVDHKTIETHGYNSVVLGHIDKLK--- 116
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD-AMLPPGTPLTAAHFRPREF 235
GD Y K +GV PKK F + + ++P GT L A +F +
Sbjct: 117 ---NVSEGDLRRYEK--------AGVSPKKHTGEFRVRDEQGLIPTGTELRADYFAVGQL 165
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV+ ++ +GF GVMKR GFKG+ A+HGV+K+HR G + + RV PG
Sbjct: 166 VDVKAVSKGKGFAGVMKRHGFKGLNASHGVSKAHRSAGSMGASQDPGRVLPG 217
>gi|299473316|emb|CBN77715.1| Ribosomal protein L3 [Ectocarpus siliculosus]
Length = 369
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 13/184 (7%)
Query: 104 EPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNR 163
+ L+ E S +R+G + +G ++ G + T++Q+ + +++ E
Sbjct: 104 QSLEAREWNPSVRRSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTE------ 157
Query: 164 KPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGT 223
L +G K F+ +GV PK+KL F ++ +A+LP G
Sbjct: 158 -------TDGYTSLQLGVGERKTKNVNKPDAERFRRAGVNPKRKLMEFRVSAEALLPVGF 210
Query: 224 PLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKAR 283
L A HF + +DV G + +GFQG MKRWGFKG A+HGV+K+ R G R
Sbjct: 211 QLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTPRHIGSTGQCQDPGR 270
Query: 284 VYPG 287
V+ G
Sbjct: 271 VFKG 274
>gi|170780733|ref|YP_001709065.1| 50S ribosomal protein L3 [Clavibacter michiganensis subsp.
sepedonicus]
gi|212288255|sp|B0RB39.1|RL3_CLAMS RecName: Full=50S ribosomal protein L3
gi|169155301|emb|CAQ00404.1| 50S ribosomal protein L3 [Clavibacter michiganensis subsp.
sepedonicus]
Length = 217
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 13/170 (7%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
TGL+G +G +W +N + T+VQ+ N + + PE G +
Sbjct: 9 TGLLGTKLGMTQVWDENNKLIPVTVVQITPNVVTQVRTPEV-------------DGYGAI 55
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
+ DP K G F +GV P++ L A G +T F P +D
Sbjct: 56 QIAYGQIDPRKADKPSTGHFDKAGVTPRRHLTEVRTADFAEYTLGQEITVGAFEPGTKVD 115
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G + +GF GVMKR FKG+ A+HG ++HR+ G I + + +RV+ G
Sbjct: 116 VVGTSKGKGFAGVMKRHNFKGVSASHGSHRNHRKPGSIGASSTPSRVFKG 165
>gi|385724176|gb|AFI74111.1| ribosomal protein L3, partial [Bradyrhizobium sp. Aec12.3]
Length = 144
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 59/105 (56%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R K L +G+ S K G F + V PK+KL F ++ D+++P G +
Sbjct: 25 HRTTEKNGYVALQLGSGSRKTVYMPKAERGQFAVAKVEPKRKLAEFRVSEDSLIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 85 QADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR 129
>gi|85374465|ref|YP_458527.1| 50S ribosomal protein L3 [Erythrobacter litoralis HTCC2594]
gi|123293706|sp|Q2N9B1.1|RL3_ERYLH RecName: Full=50S ribosomal protein L3
gi|84787548|gb|ABC63730.1| ribosomal protein L3 [Erythrobacter litoralis HTCC2594]
Length = 289
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 79/172 (45%), Gaps = 14/172 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++ + D ++ R + +
Sbjct: 2 RTGVIAKKVGMTRLFQEDGRHVPVTVLALEDCQVVSQ-------------RTQERDGYFA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIIT-PDAMLPPGTPLTAAHFRPREF 235
L VG+ K F + V K K+ F + D +LP G ++A HF +
Sbjct: 49 LQVGSGVAKQKNVAKPQREAFAKAEVGLKMKVAEFRVEGEDGLLPVGAAISAEHFIAGQK 108
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+D+ G T +GF G MKRWGF G+ ATHGV+ SHR G + RV+ G
Sbjct: 109 VDITGYTQGKGFAGAMKRWGFGGLRATHGVSISHRSHGSTGNRQDPGRVFKG 160
>gi|448087594|ref|XP_004196364.1| Piso0_005824 [Millerozyma farinosa CBS 7064]
gi|359377786|emb|CCE86169.1| Piso0_005824 [Millerozyma farinosa CBS 7064]
Length = 274
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 15/172 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R GL+G G + GE+ T++++ + ++ + E N K K
Sbjct: 60 RPGLLGVKRGMITWFTDKGEQFAATVIEIDNCEVVDHKTIETHGYNSVVLGHIDKLK--- 116
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD-AMLPPGTPLTAAHFRPREF 235
GD Y K +G+ PKK F + + ++P GT L A +F +
Sbjct: 117 ---NVSEGDLRRYEK--------AGISPKKHTGEFRVKDEQGLIPTGTELRADYFAVGQL 165
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV+ +T +GF GVMKR GFKG+ A+HGV+K+HR G + + RV PG
Sbjct: 166 VDVKAVTKGKGFAGVMKRHGFKGLNASHGVSKAHRSAGSMGASQDPGRVLPG 217
>gi|323136086|ref|ZP_08071169.1| 50S ribosomal protein L3 [Methylocystis sp. ATCC 49242]
gi|322399177|gb|EFY01696.1| 50S ribosomal protein L3 [Methylocystis sp. ATCC 49242]
Length = 240
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ ++ R + K
Sbjct: 2 RSGVIAQKVGMTRVFTEAGEHVPVTVLKLDGCQVV-------------AQRTKEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G +K F + V PK KL F + + +LP G +TA HF +F+
Sbjct: 49 VQLGIGRAKVKNVSKAERTRFAAAKVEPKMKLAEFRVNEEELLPVGAEITADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G T +GF G MKRWGF G+ A+HGV+ SHR G
Sbjct: 109 DVTGTTTGKGFAGPMKRWGFGGLRASHGVSISHRSHGS 146
>gi|344229363|gb|EGV61249.1| translation protein [Candida tenuis ATCC 10573]
gi|344229364|gb|EGV61250.1| hypothetical protein CANTEDRAFT_116809 [Candida tenuis ATCC 10573]
Length = 285
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 197 FKNSGVPPKKKLCRFII-TPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWG 255
F+ +GV PK + F I ++P GT L A +F + +D++G+T +GF G MKRWG
Sbjct: 122 FEQAGVTPKHHIAEFRIRDGSGLIPVGTELRADYFAVGQQVDIKGVTKGKGFAGPMKRWG 181
Query: 256 FKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F G+PATHGV+ +HR G + RV PG
Sbjct: 182 FAGLPATHGVSLAHRSHGAMGGNQTPGRVLPG 213
>gi|385724262|gb|AFI74154.1| ribosomal protein L3, partial [Bradyrhizobium sp. Tpma1.5]
Length = 144
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%)
Query: 195 GLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRW 254
G F S V PK+K+ F ++ DA++P G + A HF +F+DV G ++ +GF G MKRW
Sbjct: 54 GQFAVSKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSIGKGFAGGMKRW 113
Query: 255 GFKGMPATHGVTKSHR 270
F G+ ATHGV+ SHR
Sbjct: 114 NFGGLRATHGVSISHR 129
>gi|385724422|gb|AFI74234.1| ribosomal protein L3, partial [Bradyrhizobium sp. rbc1]
Length = 144
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R K L +GA + K G F + V PK+K+ F ++ DA++P G +
Sbjct: 25 HRTTEKNGYVALQLGAGTRKTVYLPKAERGQFAVAKVEPKRKVTEFRVSEDALIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK 281
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR I S G+
Sbjct: 85 QADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHR---SIGSTGGR 137
>gi|385724384|gb|AFI74215.1| ribosomal protein L3, partial [Bradyrhizobium sp. bbc1]
gi|385724406|gb|AFI74226.1| ribosomal protein L3, partial [Bradyrhizobium sp. dbc1b]
Length = 144
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 60/105 (57%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R + K L +GA + K G F + V PK+K+ F ++ DA++P G +
Sbjct: 25 HRTKEKNGYVALQLGAGTRKTVYLPKAERGQFAVAKVEPKRKVTEFRVSEDALIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 85 QADHFVVGQFVDVTGSSVGKGFAGGMKRWNFGGLRATHGVSISHR 129
>gi|49475794|ref|YP_033835.1| 50S ribosomal protein L3 [Bartonella henselae str. Houston-1]
gi|81827700|sp|Q6G2W5.1|RL3_BARHE RecName: Full=50S ribosomal protein L3
gi|49238601|emb|CAF27842.1| 50S ribosomal protein l3 [Bartonella henselae str. Houston-1]
Length = 246
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRIYNDAGEHVPVTVLRLENCQVVAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
++ +L G F + V PK K+ F ++PD +L GT +TA HF P + +
Sbjct: 54 GFAKVKNTSQALR-----GHFAKASVEPKAKIAEFRVSPDNLLDIGTEITAEHFVPGQRV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTTIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKG 159
>gi|183601944|ref|ZP_02963313.1| 50S ribosomal protein L3 [Bifidobacterium animalis subsp. lactis
HN019]
gi|219682857|ref|YP_002469240.1| 50S ribosomal protein L3 [Bifidobacterium animalis subsp. lactis
AD011]
gi|241190433|ref|YP_002967827.1| 50S ribosomal protein L3 [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|241195839|ref|YP_002969394.1| 50S ribosomal protein L3 [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|384190665|ref|YP_005576413.1| 50S ribosomal protein L3 [Bifidobacterium animalis subsp. lactis
BB-12]
gi|384191807|ref|YP_005577554.1| 50S ribosomal protein L3 [Bifidobacterium animalis subsp. lactis
CNCM I-2494]
gi|384193433|ref|YP_005579179.1| 50S ribosomal protein L3 [Bifidobacterium animalis subsp. lactis
BLC1]
gi|384194989|ref|YP_005580734.1| 50S ribosomal protein L3 [Bifidobacterium animalis subsp. lactis
V9]
gi|387820300|ref|YP_006300343.1| 50S ribosomal protein L3 [Bifidobacterium animalis subsp. lactis
B420]
gi|387821968|ref|YP_006301917.1| 50S ribosomal protein L3 [Bifidobacterium animalis subsp. lactis
Bi-07]
gi|423678955|ref|ZP_17653831.1| 50S ribosomal protein L3 [Bifidobacterium animalis subsp. lactis BS
01]
gi|183218829|gb|EDT89471.1| 50S ribosomal protein L3 [Bifidobacterium animalis subsp. lactis
HN019]
gi|219620507|gb|ACL28664.1| 50S ribosomal protein L3 [Bifidobacterium animalis subsp. lactis
AD011]
gi|240248825|gb|ACS45765.1| 50S ribosomal protein L3 [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|240250393|gb|ACS47332.1| 50S ribosomal protein L3 [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|289178157|gb|ADC85403.1| LSU ribosomal protein L3P [Bifidobacterium animalis subsp. lactis
BB-12]
gi|295793420|gb|ADG32955.1| 50S ribosomal protein L3 [Bifidobacterium animalis subsp. lactis
V9]
gi|340364544|gb|AEK29835.1| LSU ribosomal protein L3P [Bifidobacterium animalis subsp. lactis
CNCM I-2494]
gi|345282292|gb|AEN76146.1| 50S ribosomal protein L3 [Bifidobacterium animalis subsp. lactis
BLC1]
gi|366042144|gb|EHN18625.1| 50S ribosomal protein L3 [Bifidobacterium animalis subsp. lactis BS
01]
gi|386653001|gb|AFJ16131.1| LSU ribosomal protein L3p (L3e) [Bifidobacterium animalis subsp.
lactis B420]
gi|386654576|gb|AFJ17705.1| LSU ribosomal protein L3p (L3e) [Bifidobacterium animalis subsp.
lactis Bi-07]
Length = 216
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 81/177 (45%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
++ + R L+GK +G +W +NG TLV+V N ++ + EE G
Sbjct: 1 MSQNKNRNALLGKKLGMSQVWDENGFFVPVTLVEVSTN-VVTAVKNEETD-------GYK 52
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
+LG V DP TK G F +GV P++ L PG LTA F
Sbjct: 53 AVQLGYGQV-----DPRKVTKPMAGHFAKAGVTPRRHLAEVRTENVEDFEPGQELTAEVF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G T +GF G +KRWGFK THG K+ RR G + + A +R+ G
Sbjct: 108 PEGVQVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKG 164
>gi|254418121|ref|ZP_05031845.1| ribosomal protein L3 [Brevundimonas sp. BAL3]
gi|196184298|gb|EDX79274.1| ribosomal protein L3 [Brevundimonas sp. BAL3]
Length = 249
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G ++ +G T++Q+ ++ E R Y
Sbjct: 2 RTGVIAKKLGMTRVFADDGAHVPVTVLQLDGCQVVGQRTQE-----RDGYV--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +GA + K F + V PK + F + + +L G L+A HF + +
Sbjct: 49 LQLGAGTKKAKNTNKAQRETFAKAEVEPKAYVTEFRVDAEGLLDVGAELSAEHFVVGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D++G T+ +GF G MKRW F G+ ATHGV+ SHR G + R +PG
Sbjct: 109 DIQGETIGKGFAGAMKRWNFGGLRATHGVSLSHRSHGSTGNRQDPGRTFPG 159
>gi|294790411|ref|ZP_06755569.1| 50S ribosomal protein L3 [Scardovia inopinata F0304]
gi|294458308|gb|EFG26661.1| 50S ribosomal protein L3 [Scardovia inopinata F0304]
Length = 216
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 80/177 (45%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
++++ R L+GK +G +W NG TLV V N II + +E +
Sbjct: 1 MSSNHNRKALVGKKLGMSQVWDDNGFFVPVTLVDVSTN-IITAVKTDETDGYK------- 52
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
+ +G + DP+ TK G F +GV P++ L PG L F
Sbjct: 53 -----AVQLGYGAIDPTKVTKPLAGHFAKAGVTPRRHLVEVRTEDADSFEPGQELPVDTF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +DV G T +GF G +KRWGFK THG K+ RR G + + A +R+ G
Sbjct: 108 ADGQRVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKG 164
>gi|307718206|ref|YP_003873738.1| 50S ribosomal protein L3 [Spirochaeta thermophila DSM 6192]
gi|306531931|gb|ADN01465.1| 50S ribosomal protein L3 [Spirochaeta thermophila DSM 6192]
Length = 208
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 84/174 (48%), Gaps = 20/174 (11%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
G+IG+ +G ++ NG T+++V N ++ PE R YR L
Sbjct: 2 VGVIGRKLGMTQVFDANGYVVPVTVIKVEKNTVVDVRTPE-----RHGYR--------AL 48
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
++GA S K Y G F+ G+ PKK L R I + PG + F F+D
Sbjct: 49 VLGAFPLKASRAVKPYLGQFQKRGLEPKKVL-REIRDFEGDYKPGDEIGVEIFEGVRFVD 107
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQ 291
VRGL+ +G+QGVMKR GF G PA+HG +K HR G A YP VL+
Sbjct: 108 VRGLSKGKGYQGVMKRHGFSGGPASHG-SKFHRAHGSTGQSA-----YPSKVLK 155
>gi|385724450|gb|AFI74248.1| ribosomal protein L3, partial [Bradyrhizobium sp. ll4]
Length = 144
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +G+ S K G F + V PK+++ F ++ D M+P G +
Sbjct: 25 HRTEEKNGYVALQLGSGSRKTVYMPKAERGQFAVAKVEPKRQVEEFRVSADQMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK 281
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR I S G+
Sbjct: 85 LADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHR---SIGSTGGR 137
>gi|385724208|gb|AFI74127.1| ribosomal protein L3, partial [Bradyrhizobium sp. Pe1.3]
Length = 144
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +GA + K G F + V PK+++ F +T D M+P G +
Sbjct: 25 HRTEEKNGYVALQLGAGTRKTVYLPKAERGQFAVAKVEPKRQVEEFRVTADQMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK 281
A HF +F+DV G +V +GF G M RW F G+ ATHGV+ SHR I S G+
Sbjct: 85 QADHFVVGQFVDVTGTSVGKGFAGGMNRWNFGGLRATHGVSVSHR---SIGSTGGR 137
>gi|374332221|ref|YP_005082405.1| 50S ribosomal protein L3 [Pseudovibrio sp. FO-BEG1]
gi|359345009|gb|AEV38383.1| 50S ribosomal protein L3 [Pseudovibrio sp. FO-BEG1]
Length = 238
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ +R K
Sbjct: 2 RSGVIAQKVGMTRIYNEAGEHVPVTVLRLDNCQVV-------------AHRTAEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G + + G F + V PK+KL F ++ + M+ G LTA HF +F+
Sbjct: 49 LQLGVGAAKVKNTNRAMRGHFAVAKVEPKRKLAEFRVSEENMIEVGAELTADHFLNGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G A+HGV+ SHR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGAMKRHNFGGGRASHGVSISHRAHGSTGQCQDPGKVFKG 159
>gi|386866589|ref|YP_006279583.1| 50S ribosomal protein L3 [Bifidobacterium animalis subsp. animalis
ATCC 25527]
gi|385700672|gb|AFI62620.1| 50S ribosomal protein L3 [Bifidobacterium animalis subsp. animalis
ATCC 25527]
Length = 216
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 81/177 (45%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
++ + R L+GK +G +W +NG TLV+V N ++ + EE G
Sbjct: 1 MSQNKNRNALLGKKLGMSQVWDENGFFVPVTLVEVSTN-VVTAVKNEETD-------GYK 52
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
+LG V DP TK G F +GV P++ L PG LTA F
Sbjct: 53 AVQLGYGQV-----DPRKVTKPMAGHFAKAGVTPRRHLAEVRTENVEDFEPGQELTAEIF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G T +GF G +KRWGFK THG K+ RR G + + A +R+ G
Sbjct: 108 PEGVQVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKG 164
>gi|395767223|ref|ZP_10447758.1| 50S ribosomal protein L3 [Bartonella doshiae NCTC 12862]
gi|395414536|gb|EJF80978.1| 50S ribosomal protein L3 [Bartonella doshiae NCTC 12862]
Length = 245
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + +I E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRIYNDAGEHVPVTVLRLENCQVIAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
++ +L G F + V PK K+ F ++PD +L GT +TA HF P + +
Sbjct: 54 GFAKVKNTSQALR-----GHFAKASVEPKAKIAEFRVSPDNLLDVGTEITAEHFVPGQRV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKG 159
>gi|379331972|gb|AFD02472.1| 50S ribosomal protein L3, partial [Bradyrhizobium canariense]
gi|385724430|gb|AFI74238.1| ribosomal protein L3, partial [Bradyrhizobium sp. nevr8]
gi|385724432|gb|AFI74239.1| ribosomal protein L3, partial [Bradyrhizobium sp. nevs1]
gi|385724434|gb|AFI74240.1| ribosomal protein L3, partial [Bradyrhizobium sp. nevr1]
gi|385724436|gb|AFI74241.1| ribosomal protein L3, partial [Bradyrhizobium sp. nevs4]
gi|385724438|gb|AFI74242.1| ribosomal protein L3, partial [Bradyrhizobium sp. nevs8]
gi|385724440|gb|AFI74243.1| ribosomal protein L3, partial [Bradyrhizobium sp. lou1]
gi|385724442|gb|AFI74244.1| ribosomal protein L3, partial [Bradyrhizobium sp. lou5]
gi|385724444|gb|AFI74245.1| ribosomal protein L3, partial [Bradyrhizobium sp. lous1]
gi|385724446|gb|AFI74246.1| ribosomal protein L3, partial [Bradyrhizobium sp. lous2]
gi|385724454|gb|AFI74250.1| ribosomal protein L3, partial [Bradyrhizobium sp. leu3]
gi|385724456|gb|AFI74251.1| ribosomal protein L3, partial [Bradyrhizobium sp. leu14]
gi|385724458|gb|AFI74252.1| ribosomal protein L3, partial [Bradyrhizobium sp. leu16]
gi|385724460|gb|AFI74253.1| ribosomal protein L3, partial [Bradyrhizobium sp. leu1]
gi|385724462|gb|AFI74254.1| ribosomal protein L3, partial [Bradyrhizobium sp. leu19]
gi|385724464|gb|AFI74255.1| ribosomal protein L3, partial [Bradyrhizobium sp. leu5]
gi|385724466|gb|AFI74256.1| ribosomal protein L3, partial [Bradyrhizobium sp. leu18]
gi|385724468|gb|AFI74257.1| ribosomal protein L3, partial [Bradyrhizobium sp. lua12]
gi|385724470|gb|AFI74258.1| ribosomal protein L3, partial [Bradyrhizobium sp. lua6]
gi|385724472|gb|AFI74259.1| ribosomal protein L3, partial [Bradyrhizobium sp. lss3]
gi|385724474|gb|AFI74260.1| ribosomal protein L3, partial [Bradyrhizobium sp. lss7]
gi|385724476|gb|AFI74261.1| ribosomal protein L3, partial [Bradyrhizobium sp. lss8]
gi|385724478|gb|AFI74262.1| ribosomal protein L3, partial [Bradyrhizobium sp. lsds6]
Length = 144
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 59/105 (56%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +G+ S K G F + V PK+++ F ++ D M+P G +
Sbjct: 25 HRTEEKNGYVALQLGSGSRKTVYMPKAERGQFAVAKVEPKRQVEEFRVSADQMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G +V +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 85 LADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHR 129
>gi|167645578|ref|YP_001683241.1| 50S ribosomal protein L3 [Caulobacter sp. K31]
gi|189042835|sp|B0T2C2.1|RL3_CAUSK RecName: Full=50S ribosomal protein L3
gi|167348008|gb|ABZ70743.1| ribosomal protein L3 [Caulobacter sp. K31]
Length = 256
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
+T + RTG+I K +G + + G+ T++ + + R
Sbjct: 1 MTLPANRTGVIAKKLGMTRFFDETGQHVPVTVLSLDGCQVT-------------AQRTVE 47
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
K L +GA + P G F + V PK+ + F + A++ G TA H+
Sbjct: 48 KDGYTALQLGAGAKKPKNTPNAMRGHFAKNSVEPKRIVAEFRVDEAALIEVGAEFTADHY 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +D++G+TV +GF G MKRW F G+ ATHGV+ SHR G R + G
Sbjct: 108 VAGQKVDIQGITVGKGFAGAMKRWNFSGLRATHGVSVSHRSHGSTGQRQDPGRTFKG 164
>gi|298291438|ref|YP_003693377.1| 50S ribosomal protein L3 [Starkeya novella DSM 506]
gi|296927949|gb|ADH88758.1| 50S ribosomal protein L3 [Starkeya novella DSM 506]
Length = 251
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T+++V + ++ +R K
Sbjct: 2 RSGVIAQKVGMTRIFNDAGEHVPVTVLKVDNCQVV-------------AHRTVEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G P T+ G F + V PK+K+ F + ++P G LT HF +F+
Sbjct: 49 VQLGVGQAKPQNTTRALRGHFAVAKVEPKRKMAEFRVEESDLIPVGAELTVDHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G ++ +GF G MKR F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTSIGKGFAGGMKRHNFGGLRATHGVSISHRSIGS 146
>gi|386346266|ref|YP_006044515.1| 50S ribosomal protein L3 [Spirochaeta thermophila DSM 6578]
gi|339411233|gb|AEJ60798.1| 50S ribosomal protein L3 [Spirochaeta thermophila DSM 6578]
Length = 208
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 85/174 (48%), Gaps = 20/174 (11%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
G+IG+ +G ++ NG T+++V N ++ PE R YR L
Sbjct: 2 VGVIGRKLGMTQVFDANGYVVPVTVIKVEKNTVVDVRTPE-----RHGYR--------AL 48
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
++GA S K Y G F+ G+ PKK L R I + PG + F F+D
Sbjct: 49 VLGAFPLKASRAVKPYLGQFQKRGLEPKKVL-REIRDFEGDYKPGDEIGVEIFEGVRFVD 107
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQ 291
VRGL+ +G+QGVMKR GF G PA+HG +K HR A G+ YP VL+
Sbjct: 108 VRGLSKGKGYQGVMKRHGFSGGPASHG-SKFHR-----AHGSTGQATYPAKVLK 155
>gi|217976767|ref|YP_002360914.1| 50S ribosomal protein L3 [Methylocella silvestris BL2]
gi|254803683|sp|B8ELG3.1|RL3_METSB RecName: Full=50S ribosomal protein L3
gi|217502143|gb|ACK49552.1| ribosomal protein L3 [Methylocella silvestris BL2]
Length = 245
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ ++ + E R Y
Sbjct: 2 RSGVIAQKLGMTRVFNDGGEHVPVTVLKLDGCQVVAHRTKE-----RNGYT--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G +K G F + V PK KL F + +LP G +TA HF +F+
Sbjct: 49 LQLGIGRAKVKNVSKAERGRFAIAEVEPKLKLAEFRVEESDLLPVGAEITADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G ++ +GF G MKRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTSIGKGFAGPMKRWNFGGLRATHGVSLSHRSHGS 146
>gi|452909992|ref|ZP_21958675.1| LSU ribosomal protein L3p (L3e) [Kocuria palustris PEL]
gi|452834952|gb|EME37750.1| LSU ribosomal protein L3p (L3e) [Kocuria palustris PEL]
Length = 210
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
G++G +G +W +NG T+V+ N + + PE +
Sbjct: 3 GILGTKLGMTQVWDENGNLVPVTVVRADTNVVTQLRTPEN-------------DGYSAVQ 49
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+G DP TK G F+ +GV P++ L + A G L+ F +DV
Sbjct: 50 IGYGQIDPRKVTKPLAGHFEKAGVTPRRHLVELRTSDAAEYSLGQELSVEIFEAGARVDV 109
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T +G GVMKR GF G+ A+HG K+HR+ G I + + ARV+ G
Sbjct: 110 VGTTKGKGTAGVMKRHGFAGVSASHGAHKNHRKPGSIGNASYAARVFKG 158
>gi|427391363|ref|ZP_18885769.1| 50S ribosomal protein L3 [Actinobaculum massiliae ACS-171-V-Col2]
gi|425732006|gb|EKU94818.1| 50S ribosomal protein L3 [Actinobaculum massiliae ACS-171-V-Col2]
Length = 221
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 81/184 (44%), Gaps = 17/184 (9%)
Query: 106 LQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKP 165
+ + T S L+G +G W ++G T+V+V N + + PE
Sbjct: 1 MNSKQATASKPVKALLGTKLGMTQTWGEDGRLIPITVVRVGTNVVTQVRTPEVD------ 54
Query: 166 YRGEPKRKLGCLLVGAESGDPSL--YTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGT 223
G V SGD TK G F+ +GV P+K L A G
Sbjct: 55 ---------GYSAVQLASGDEKTKNVTKPMAGHFEKAGVSPRKNLAEIRTADAAEYELGQ 105
Query: 224 PLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKAR 283
LTA F + +DV G T +GF GVMKR+GF+G P HG K HR+ G I + A +R
Sbjct: 106 ELTADVFEAGQSVDVIGTTKGKGFAGVMKRYGFRGGPKAHGAHKIHRKPGSIGACATPSR 165
Query: 284 VYPG 287
V+ G
Sbjct: 166 VFRG 169
>gi|396585521|ref|ZP_10485930.1| 50S ribosomal protein L3 [Actinomyces sp. ICM47]
gi|395546722|gb|EJG14306.1| 50S ribosomal protein L3 [Actinomyces sp. ICM47]
Length = 221
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 13/168 (7%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
L+G+ +G +W +G T+VQV N ++ + EE G +LG +
Sbjct: 15 LLGRKLGMTQVWDADGHLVPLTVVQVGTN-VVTQVRTEEVD-------GYSAIQLGFGEI 66
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
D TK G F+ +GV P++ L + G L AA F + +DV
Sbjct: 67 -----DSRKVTKPLQGHFEKAGVAPRRHLAEVRTSEQDSYELGQELDAATFEAGQSVDVS 121
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T +GF GVMKR GF G+ A+HG ++HR+ G I + A R++ G
Sbjct: 122 GTTKGKGFAGVMKRHGFAGVSASHGAHRNHRKPGSIGACATPGRIFKG 169
>gi|385724178|gb|AFI74112.1| ribosomal protein L3, partial [Bradyrhizobium sp. Ai4.2]
gi|385724224|gb|AFI74135.1| ribosomal protein L3, partial [Bradyrhizobium sp. Ai1a-2]
Length = 144
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 56/95 (58%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREF 235
L +G+ S K G F + V PK+K+ F ++ DA++P G + A HF +F
Sbjct: 35 ALQLGSGSRKTVYMPKAERGQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQF 94
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
+DV G ++ +GF G MKRW F G+ ATHGV+ SHR
Sbjct: 95 VDVTGTSIGKGFAGGMKRWNFGGLRATHGVSISHR 129
>gi|329114217|ref|ZP_08242979.1| 50S ribosomal protein L3 [Acetobacter pomorum DM001]
gi|326696293|gb|EGE47972.1| 50S ribosomal protein L3 [Acetobacter pomorum DM001]
Length = 238
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 13/161 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTGLI K +G L+ ++G T++ H+ + R Y
Sbjct: 13 RTGLIAKKLGMSRLFKEDGTHVPVTVL-----HVDDVQVVDVRNQERDGYV--------A 59
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G TK G F + V PK+ L F + DA L G L+A+HF + +
Sbjct: 60 VQLGMGKAKVKNVTKPNRGHFARTKVEPKQALREFRVADDAALEVGATLSASHFVVGQKV 119
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
DV G++ +GF G MKRW F G+ ATHGV+ SHR G +
Sbjct: 120 DVTGVSKGKGFAGAMKRWNFAGLEATHGVSISHRSHGSTGN 160
>gi|385724452|gb|AFI74249.1| ribosomal protein L3, partial [Bradyrhizobium sp. llw1]
Length = 144
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 195 GLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRW 254
G F + V PK+K+ F ++ DA++P G + A HF +F+DV G +V +GF G MKRW
Sbjct: 54 GQFAVAKVEPKRKVTEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSVGKGFAGGMKRW 113
Query: 255 GFKGMPATHGVTKSHRRGGCIASGAGK 281
F G+ ATHGV+ SHR I S G+
Sbjct: 114 NFGGLRATHGVSVSHR---SIGSTGGR 137
>gi|379331890|gb|AFD02431.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. cvg10]
Length = 144
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 50/76 (65%)
Query: 195 GLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRW 254
G F + V PK+K+ F ++ DA++P G + A HF +F+DV G ++ +GF G MKRW
Sbjct: 54 GQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSIGKGFAGGMKRW 113
Query: 255 GFKGMPATHGVTKSHR 270
F G+ ATHGV+ SHR
Sbjct: 114 NFGGLRATHGVSVSHR 129
>gi|385724360|gb|AFI74203.1| ribosomal protein L3, partial [Bradyrhizobium sp. mg1.32]
Length = 144
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 50/76 (65%)
Query: 195 GLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRW 254
G F + V PK+K+ F ++ DA++P G + A HF +F+DV G ++ +GF G MKRW
Sbjct: 54 GQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSIGKGFAGGMKRW 113
Query: 255 GFKGMPATHGVTKSHR 270
F G+ ATHGV+ SHR
Sbjct: 114 NFGGLRATHGVSVSHR 129
>gi|365760525|gb|EHN02240.1| Mrpl9p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 202
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 14/154 (9%)
Query: 135 GEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYC 194
GE+ T+++V + +I + PE C VG S S +++
Sbjct: 10 GERTAATILEVNNVEVIMHRTPE------------ANGYFACQ-VGYGSKHLSKVSRQML 56
Query: 195 GLFKNSGVPPKKKLCRFIITPD-AMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKR 253
G F + V PK+ + F + + +L PGT L + F+ +++D+R ++ +GF GVMKR
Sbjct: 57 GHFSSKVVNPKEYVAEFRVENEKGLLSPGTLLKPSFFKEGQYVDIRSVSKGKGFTGVMKR 116
Query: 254 WGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFKG+ A+HG + HR GG RV PG
Sbjct: 117 YGFKGLRASHGTSIMHRHGGSYGQNQDPGRVLPG 150
>gi|399528196|ref|ZP_10767850.1| 50S ribosomal protein L3 [Actinomyces sp. ICM39]
gi|398361248|gb|EJN45023.1| 50S ribosomal protein L3 [Actinomyces sp. ICM39]
Length = 221
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 80/168 (47%), Gaps = 13/168 (7%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
L+G+ +G +W +G T+VQV N ++ + EE G +LG +
Sbjct: 15 LLGRKLGMTQVWDADGHLVPLTVVQVGTN-VVTQVRTEEVD-------GYSAIQLGFGEI 66
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
D TK G F+ +GV P++ L + G L AA F + +DV
Sbjct: 67 -----DSRKVTKPLQGHFEKAGVAPRRHLVEVRTSEHDSYELGQELDAATFEAGQAVDVS 121
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T +GF GVMKR GF G+ A+HG ++HR+ G I + A R++ G
Sbjct: 122 GTTKGKGFAGVMKRHGFAGVSASHGAHRNHRKPGSIGACATPGRIFKG 169
>gi|332560140|ref|ZP_08414462.1| 50S ribosomal protein L3 [Rhodobacter sphaeroides WS8N]
gi|332277852|gb|EGJ23167.1| 50S ribosomal protein L3 [Rhodobacter sphaeroides WS8N]
Length = 229
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 13/158 (8%)
Query: 130 LWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLY 189
L++++G++ T++Q+ ++ R K + +GA +
Sbjct: 4 LFLEDGKQVPVTVLQLDSLQVV-------------AQRTTEKDGYTAVQLGAGAAKAKRV 50
Query: 190 TKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQG 249
+ G F + V PK+K+ F +TPD ++ G +TA H+ +F+D+ G ++ +GF G
Sbjct: 51 SAAQRGHFAKANVEPKRKIAEFRVTPDCLIDVGAEITADHYFAGQFVDIAGTSIGKGFAG 110
Query: 250 VMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 111 AMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 148
>gi|452752807|ref|ZP_21952547.1| LSU ribosomal protein L3p (L3e) [alpha proteobacterium JLT2015]
gi|451959879|gb|EMD82295.1| LSU ribosomal protein L3p (L3e) [alpha proteobacterium JLT2015]
Length = 239
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ +G T++ + ++ +R
Sbjct: 2 RTGVIAKKMGMTRLFQDDGRHVPVTVLALEGCQVV-------------SHRTVDVDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + K G F + V PK ++ F ++ DA++ G L A HF + +
Sbjct: 49 VQLGAGTAKAKNVNKPQRGHFGKAEVEPKARVVEFRVSDDALVDVGAELGADHFLKGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D+ G T +GF G MKRWGF GM A+HGV+ SHR G +V+ G
Sbjct: 109 DISGRTQGKGFAGAMKRWGFGGMRASHGVSISHRAHGSTGQCQDPGKVFKG 159
>gi|385724428|gb|AFI74237.1| ribosomal protein L3, partial [Bradyrhizobium sp. jwc91-2]
Length = 144
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 50/76 (65%)
Query: 195 GLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRW 254
G F + V PK+K+ F ++ DA++P G + A HF +F+DV G ++ +GF G MKRW
Sbjct: 54 GQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSIGKGFAGGMKRW 113
Query: 255 GFKGMPATHGVTKSHR 270
F G+ ATHGV+ SHR
Sbjct: 114 NFGGLRATHGVSVSHR 129
>gi|379331800|gb|AFD02386.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. th.b2]
gi|379331802|gb|AFD02387.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. rp3]
gi|379331804|gb|AFD02388.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. onl92.6]
gi|379331810|gb|AFD02391.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. ApE4.8]
gi|379331812|gb|AFD02392.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. ApCV2]
gi|379331814|gb|AFD02393.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. ApT2]
gi|379331818|gb|AFD02395.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. BtLT4]
gi|379331820|gb|AFD02396.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. BtLT13]
gi|379331822|gb|AFD02397.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. BtRI3]
gi|379331824|gb|AFD02398.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. BtRI18]
gi|379331826|gb|AFD02399.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. Cf1]
gi|379331828|gb|AFD02400.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. Cf3.6]
gi|379331830|gb|AFD02401.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. Cf4]
gi|379331834|gb|AFD02403.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. DcE3.5]
gi|379331838|gb|AFD02405.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. DesT1]
gi|379331842|gb|AFD02407.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. Dp6.2]
gi|379331846|gb|AFD02409.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. DrLT5]
gi|379331848|gb|AFD02410.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. DrLT6]
gi|379331850|gb|AFD02411.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. Lh10]
gi|379331852|gb|AFD02412.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. Lh15]
gi|379331854|gb|AFD02413.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. Lei1]
gi|379331858|gb|AFD02415.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. LcCT6]
gi|379331860|gb|AFD02416.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. LcRI3]
gi|379331870|gb|AFD02421.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. Tep5]
gi|379331872|gb|AFD02422.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. Tep17]
gi|379331874|gb|AFD02423.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. abh7]
gi|379331876|gb|AFD02424.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. abs7]
gi|379331878|gb|AFD02425.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. abw9]
gi|379331880|gb|AFD02426.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. aai2]
gi|379331882|gb|AFD02427.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. aai25]
gi|379331884|gb|AFD02428.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. bth1]
gi|379331886|gb|AFD02429.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. bth12]
gi|379331892|gb|AFD02432.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. cvg25]
gi|379331894|gb|AFD02433.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. cfhr.1a]
gi|379331898|gb|AFD02435.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. cfs5]
gi|379331900|gb|AFD02436.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. cfrr1]
gi|379331904|gb|AFD02438.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. cnw15]
gi|379331906|gb|AFD02439.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. cmh1]
gi|379331910|gb|AFD02441.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. cmy17]
gi|379331912|gb|AFD02442.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. dnr7]
gi|379331914|gb|AFD02443.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. dps3]
gi|379331916|gb|AFD02444.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. dpg38]
gi|379331918|gb|AFD02445.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. dpg39]
gi|379331920|gb|AFD02446.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. gvw6]
gi|379331926|gb|AFD02449.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. lia4]
gi|379331928|gb|AFD02450.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. lrs5]
gi|379331930|gb|AFD02451.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. lrw2]
gi|379331932|gb|AFD02452.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. rhw4]
gi|379331934|gb|AFD02453.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. rhyd.1a]
gi|379331936|gb|AFD02454.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. sba8]
gi|379331938|gb|AFD02455.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. sbw3]
gi|379331940|gb|AFD02456.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. sbw22]
gi|379331942|gb|AFD02457.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. teph5]
gi|379331944|gb|AFD02458.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. teva11]
gi|379331946|gb|AFD02459.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. teva23]
gi|379331950|gb|AFD02461.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. cmw2]
gi|379331952|gb|AFD02462.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. zb1]
gi|379331954|gb|AFD02463.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. zb15]
gi|379331958|gb|AFD02465.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. abh10]
gi|379331960|gb|AFD02466.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. sbw5]
gi|379331962|gb|AFD02467.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. ApB8]
gi|379331964|gb|AFD02468.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. DpLT2]
gi|379331966|gb|AFD02469.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. Tep1]
gi|379331968|gb|AFD02470.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. BtRI4]
gi|379331970|gb|AFD02471.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. DrLT7]
gi|385724198|gb|AFI74122.1| ribosomal protein L3, partial [Bradyrhizobium sp. Lop10.4]
gi|385724270|gb|AFI74158.1| ribosomal protein L3, partial [Bradyrhizobium sp. asg13]
gi|385724292|gb|AFI74169.1| ribosomal protein L3, partial [Bradyrhizobium sp. cp1]
gi|385724296|gb|AFI74171.1| ribosomal protein L3, partial [Bradyrhizobium sp. cp16]
gi|385724302|gb|AFI74174.1| ribosomal protein L3, partial [Bradyrhizobium sp. gs4]
gi|385724304|gb|AFI74175.1| ribosomal protein L3, partial [Bradyrhizobium sp. gs8]
gi|385724316|gb|AFI74181.1| ribosomal protein L3, partial [Bradyrhizobium sp. lor6]
gi|385724318|gb|AFI74182.1| ribosomal protein L3, partial [Bradyrhizobium sp. lus2]
gi|385724340|gb|AFI74193.1| ribosomal protein L3, partial [Bradyrhizobium sp. dgra1.8]
gi|385724342|gb|AFI74194.1| ribosomal protein L3, partial [Bradyrhizobium sp. dgra2.2]
gi|385724344|gb|AFI74195.1| ribosomal protein L3, partial [Bradyrhizobium sp. dret5.5]
gi|385724346|gb|AFI74196.1| ribosomal protein L3, partial [Bradyrhizobium sp. dret6.3]
gi|385724348|gb|AFI74197.1| ribosomal protein L3, partial [Bradyrhizobium sp. dret8.2]
gi|385724364|gb|AFI74205.1| ribosomal protein L3, partial [Bradyrhizobium sp. Ppar1-21]
gi|385724366|gb|AFI74206.1| ribosomal protein L3, partial [Bradyrhizobium sp. ppar1.31]
gi|385724368|gb|AFI74207.1| ribosomal protein L3, partial [Bradyrhizobium sp. ppar1.39]
gi|385724376|gb|AFI74211.1| ribosomal protein L3, partial [Bradyrhizobium sp. ppau4.13]
gi|385724380|gb|AFI74213.1| ribosomal protein L3, partial [Bradyrhizobium sp. pped2.3]
gi|385724382|gb|AFI74214.1| ribosomal protein L3, partial [Bradyrhizobium sp. pped4.2]
gi|385724408|gb|AFI74227.1| ribosomal protein L3, partial [Bradyrhizobium sp. dbr2]
gi|385724410|gb|AFI74228.1| ribosomal protein L3, partial [Bradyrhizobium sp. dbr4]
gi|385724418|gb|AFI74232.1| ribosomal protein L3, partial [Bradyrhizobium sp. ram2]
gi|385724420|gb|AFI74233.1| ribosomal protein L3, partial [Bradyrhizobium sp. ram3]
gi|385724426|gb|AFI74236.1| ribosomal protein L3, partial [Bradyrhizobium sp. gvg6]
Length = 144
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 50/76 (65%)
Query: 195 GLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRW 254
G F + V PK+K+ F ++ DA++P G + A HF +F+DV G ++ +GF G MKRW
Sbjct: 54 GQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSIGKGFAGGMKRW 113
Query: 255 GFKGMPATHGVTKSHR 270
F G+ ATHGV+ SHR
Sbjct: 114 NFGGLRATHGVSVSHR 129
>gi|379331806|gb|AFD02389.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. onl92.10]
Length = 144
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 50/76 (65%)
Query: 195 GLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRW 254
G F + V PK+K+ F ++ DA++P G + A HF +F+DV G ++ +GF G MKRW
Sbjct: 54 GQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSIGKGFAGGMKRW 113
Query: 255 GFKGMPATHGVTKSHR 270
F G+ ATHGV+ SHR
Sbjct: 114 NFGGLRATHGVSVSHR 129
>gi|213693088|ref|YP_002323674.1| 50S ribosomal protein L3 [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|384200314|ref|YP_005586057.1| 50S ribosomal protein L3 [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|254803655|sp|B7GNE0.1|RL3_BIFLI RecName: Full=50S ribosomal protein L3
gi|213524549|gb|ACJ53296.1| ribosomal protein L3 [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
gi|320459266|dbj|BAJ69887.1| 50S ribosomal protein L3 [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
Length = 213
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 78/173 (45%), Gaps = 13/173 (7%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
S R L+GK +G +W +NG TLV V N ++ + EE Y+
Sbjct: 2 SNRKALLGKKLGMSQVWDENGFFVPVTLVDVSTN-VVTAVKTEE----SDGYK------- 49
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
+ +G + DP+ TK G F +GV P++ L G L A F
Sbjct: 50 -AVQLGYGAIDPTKVTKPLAGHFAKAGVTPRRHLVEVRTDDVDQFEAGQELAADLFEEGA 108
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G T +GF G +KRWGFK THG K+ RR G + + A +R+ G
Sbjct: 109 EVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKG 161
>gi|23336501|ref|ZP_00121715.1| COG0087: Ribosomal protein L3 [Bifidobacterium longum DJO10A]
gi|23466130|ref|NP_696733.1| 50S ribosomal protein L3 [Bifidobacterium longum NCC2705]
gi|189440569|ref|YP_001955650.1| 50S ribosomal protein L3 [Bifidobacterium longum DJO10A]
gi|227546476|ref|ZP_03976525.1| ribosomal protein L3 [Bifidobacterium longum subsp. longum ATCC
55813]
gi|239621010|ref|ZP_04664041.1| 50S ribosomal protein L3 [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|296454870|ref|YP_003662014.1| 50S ribosomal protein L3 [Bifidobacterium longum subsp. longum
JDM301]
gi|312133874|ref|YP_004001213.1| 50S ribosomal protein L3 [Bifidobacterium longum subsp. longum
BBMN68]
gi|317483450|ref|ZP_07942440.1| 50S ribosomal protein L3 [Bifidobacterium sp. 12_1_47BFAA]
gi|322689929|ref|YP_004209663.1| 50S ribosomal protein L3 [Bifidobacterium longum subsp. infantis
157F]
gi|322691870|ref|YP_004221440.1| 50S ribosomal protein L3 [Bifidobacterium longum subsp. longum JCM
1217]
gi|384200762|ref|YP_005586509.1| 50S ribosomal protein L3 [Bifidobacterium longum subsp. longum KACC
91563]
gi|419846996|ref|ZP_14370199.1| 50S ribosomal protein L3 [Bifidobacterium longum subsp. longum
1-6B]
gi|419850262|ref|ZP_14373265.1| 50S ribosomal protein L3 [Bifidobacterium longum subsp. longum 35B]
gi|419853509|ref|ZP_14376327.1| 50S ribosomal protein L3 [Bifidobacterium longum subsp. longum
2-2B]
gi|419854607|ref|ZP_14377393.1| 50S ribosomal protein L3 [Bifidobacterium longum subsp. longum 44B]
gi|42559648|sp|Q8G417.1|RL3_BIFLO RecName: Full=50S ribosomal protein L3
gi|226725135|sp|B3DQ13.1|RL3_BIFLD RecName: Full=50S ribosomal protein L3
gi|23326866|gb|AAN25369.1| 50S ribosomal protein L3 [Bifidobacterium longum NCC2705]
gi|189429004|gb|ACD99152.1| Ribosomal protein L3 [Bifidobacterium longum DJO10A]
gi|227213025|gb|EEI80904.1| ribosomal protein L3 [Bifidobacterium longum subsp. infantis ATCC
55813]
gi|239516111|gb|EEQ55978.1| 50S ribosomal protein L3 [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|291516469|emb|CBK70085.1| LSU ribosomal protein L3P [Bifidobacterium longum subsp. longum F8]
gi|296184302|gb|ADH01184.1| ribosomal protein L3 [Bifidobacterium longum subsp. longum JDM301]
gi|311773167|gb|ADQ02655.1| RplC [Bifidobacterium longum subsp. longum BBMN68]
gi|316915136|gb|EFV36568.1| 50S ribosomal protein L3 [Bifidobacterium sp. 12_1_47BFAA]
gi|320456726|dbj|BAJ67348.1| 50S ribosomal protein L3 [Bifidobacterium longum subsp. longum JCM
1217]
gi|320461265|dbj|BAJ71885.1| 50S ribosomal protein L3 [Bifidobacterium longum subsp. infantis
157F]
gi|338753769|gb|AEI96758.1| 50S ribosomal protein L3 [Bifidobacterium longum subsp. longum KACC
91563]
gi|386407866|gb|EIJ22819.1| 50S ribosomal protein L3 [Bifidobacterium longum subsp. longum
2-2B]
gi|386409759|gb|EIJ24593.1| 50S ribosomal protein L3 [Bifidobacterium longum subsp. longum 35B]
gi|386412540|gb|EIJ27207.1| 50S ribosomal protein L3 [Bifidobacterium longum subsp. longum
1-6B]
gi|386417612|gb|EIJ32088.1| 50S ribosomal protein L3 [Bifidobacterium longum subsp. longum 44B]
Length = 213
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 78/173 (45%), Gaps = 13/173 (7%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
S R L+GK +G +W +NG TLV V N ++ + EE Y+
Sbjct: 2 SNRKALLGKKLGMSQVWDENGFFVPVTLVDVSTN-VVTAVKTEE----SDGYK------- 49
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
+ +G + DP+ TK G F +GV P++ L G L A F
Sbjct: 50 -AVQLGYGAIDPTKVTKPLAGHFAKAGVTPRRHLVEVRTDDVDQFEAGQELAADLFEEGA 108
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G T +GF G +KRWGFK THG K+ RR G + + A +R+ G
Sbjct: 109 EVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKG 161
>gi|379331902|gb|AFD02437.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. cna3]
gi|379331924|gb|AFD02448.1| 50S ribosomal protein L3, partial [Bradyrhizobium elkanii]
gi|379331948|gb|AFD02460.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. zb34]
gi|379331956|gb|AFD02464.1| 50S ribosomal protein L3, partial [Bradyrhizobium sp. zb36]
gi|385724182|gb|AFI74114.1| ribosomal protein L3, partial [Bradyrhizobium sp. Cj3.3]
gi|385724220|gb|AFI74133.1| ribosomal protein L3, partial [Bradyrhizobium sp. Vp13.3]
gi|385724234|gb|AFI74140.1| ribosomal protein L3, partial [Bradyrhizobium sp. Dr3b-11]
gi|385724240|gb|AFI74143.1| ribosomal protein L3, partial [Bradyrhizobium sp. a16j3]
gi|385724322|gb|AFI74184.1| ribosomal protein L3, partial [Bradyrhizobium sp. mc16]
gi|385724386|gb|AFI74216.1| ribosomal protein L3, partial [Bradyrhizobium sp. pibl4]
Length = 144
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 50/76 (65%)
Query: 195 GLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRW 254
G F + V PK+K+ F ++ DA++P G + A HF +F+DV G ++ +GF G MKRW
Sbjct: 54 GQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSIGKGFAGGMKRW 113
Query: 255 GFKGMPATHGVTKSHR 270
F G+ ATHGV+ SHR
Sbjct: 114 NFGGLRATHGVSISHR 129
>gi|344923958|ref|ZP_08777419.1| 50S ribosomal protein L3 [Candidatus Odyssella thessalonicensis
L13]
gi|297717842|gb|ADI50064.1| LSU ribosomal protein L3p [Candidatus Odyssella thessalonicensis
L13]
Length = 213
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTGLI + +G + +G T++QV D ++ + K
Sbjct: 2 RTGLIAEKVGMTQFFAADGTLVPVTVLQVSDCVVVG------------KKTADSKDGYNA 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G+ + TK F + P+ L F ++ + +L PG L A HF +F+
Sbjct: 50 VQIGSNKAKINNVTKPMREFFAKKEIEPRAHLKEFRVSSENLLEPGAELKADHFAAGQFV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQ 291
DV G ++ +GF G MKR F G+ A+HGV+ +HR G + R PG V +
Sbjct: 110 DVTGTSIGKGFAGAMKRHNFGGLRASHGVSVTHRSHGSTGN-----RQDPGKVFK 159
>gi|429768306|ref|ZP_19300470.1| 50S ribosomal protein L3 [Brevundimonas diminuta 470-4]
gi|429189308|gb|EKY30147.1| 50S ribosomal protein L3 [Brevundimonas diminuta 470-4]
Length = 248
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G ++ +G T++Q+ ++ E R Y
Sbjct: 2 RTGVIAKKLGMTRVFADDGAHVPVTVLQLDGCQVVGQRTKE-----RDGYV--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +GA K +F + V PK + F + DA+L G L+A HF + +
Sbjct: 49 LQLGAGVKKAKNTAKAQREVFAKAEVEPKAYVTEFRVGEDALLDVGAELSADHFLAGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D++G T+ +GF G MKRW F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DIQGHTIGKGFAGAMKRWNFGGLRASHGVSISHRSHGSTGQRQDPGKVFKG 159
>gi|258542027|ref|YP_003187460.1| 50S ribosomal protein L3 [Acetobacter pasteurianus IFO 3283-01]
gi|384041948|ref|YP_005480692.1| 50S ribosomal protein L3 [Acetobacter pasteurianus IFO 3283-12]
gi|384050463|ref|YP_005477526.1| 50S ribosomal protein L3 [Acetobacter pasteurianus IFO 3283-03]
gi|384053573|ref|YP_005486667.1| 50S ribosomal protein L3 [Acetobacter pasteurianus IFO 3283-07]
gi|384056805|ref|YP_005489472.1| 50S ribosomal protein L3 [Acetobacter pasteurianus IFO 3283-22]
gi|384059446|ref|YP_005498574.1| 50S ribosomal protein L3 [Acetobacter pasteurianus IFO 3283-26]
gi|384062740|ref|YP_005483382.1| 50S ribosomal protein L3 [Acetobacter pasteurianus IFO 3283-32]
gi|384118816|ref|YP_005501440.1| 50S ribosomal protein L3 [Acetobacter pasteurianus IFO 3283-01-42C]
gi|421848613|ref|ZP_16281600.1| LSU ribosomal protein L3P [Acetobacter pasteurianus NBRC 101655]
gi|421851616|ref|ZP_16284309.1| LSU ribosomal protein L3P [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
gi|256633105|dbj|BAH99080.1| LSU ribosomal protein L3P [Acetobacter pasteurianus IFO 3283-01]
gi|256636162|dbj|BAI02131.1| LSU ribosomal protein L3P [Acetobacter pasteurianus IFO 3283-03]
gi|256639217|dbj|BAI05179.1| LSU ribosomal protein L3P [Acetobacter pasteurianus IFO 3283-07]
gi|256642271|dbj|BAI08226.1| LSU ribosomal protein L3P [Acetobacter pasteurianus IFO 3283-22]
gi|256645326|dbj|BAI11274.1| LSU ribosomal protein L3P [Acetobacter pasteurianus IFO 3283-26]
gi|256648381|dbj|BAI14322.1| LSU ribosomal protein L3P [Acetobacter pasteurianus IFO 3283-32]
gi|256651434|dbj|BAI17368.1| LSU ribosomal protein L3P [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256654425|dbj|BAI20352.1| LSU ribosomal protein L3P [Acetobacter pasteurianus IFO 3283-12]
gi|371460493|dbj|GAB26803.1| LSU ribosomal protein L3P [Acetobacter pasteurianus NBRC 101655]
gi|371480119|dbj|GAB29512.1| LSU ribosomal protein L3P [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
Length = 227
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 13/161 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTGLI K +G L+ ++G T++ H+ + R Y
Sbjct: 2 RTGLIAKKLGMSRLFKEDGTHVPVTVL-----HVDDVQVVDVRNQERDGYV--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G TK G F + V PK+ L F + DA L G L+A+HF + +
Sbjct: 49 VQLGMGKAKVKNVTKPNRGHFARTKVEPKQALREFRVADDAALEVGATLSASHFVVGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
DV G++ +GF G MKRW F G+ ATHGV+ SHR G +
Sbjct: 109 DVTGVSKGKGFAGAMKRWNFAGLEATHGVSISHRSHGSTGN 149
>gi|385724228|gb|AFI74137.1| ribosomal protein L3, partial [Bradyrhizobium sp. tri1]
gi|385724266|gb|AFI74156.1| ribosomal protein L3, partial [Bradyrhizobium sp. Pp2-4]
Length = 144
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 50/76 (65%)
Query: 195 GLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRW 254
G F + V PK+K+ F ++ DA++P G + A HF +F+DV G ++ +GF G MKRW
Sbjct: 54 GQFAVAKVEPKRKVAEFRVSEDALIPVGAEIQADHFVVGQFVDVTGTSIGKGFAGGMKRW 113
Query: 255 GFKGMPATHGVTKSHR 270
F G+ ATHGV+ SHR
Sbjct: 114 NFGGLRATHGVSISHR 129
>gi|329889129|ref|ZP_08267472.1| 50S ribosomal protein L3 [Brevundimonas diminuta ATCC 11568]
gi|328844430|gb|EGF93994.1| 50S ribosomal protein L3 [Brevundimonas diminuta ATCC 11568]
Length = 247
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G ++ +G T++Q+ ++ E R Y
Sbjct: 2 RTGVIAKKLGMTRVFADDGAHVPVTVLQLDGCQVVGQRTKE-----RDGYV--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +GA K +F + V PK + F + DA+L G L+A HF + +
Sbjct: 49 LQLGAGVKKAKNTAKAQREVFAKAEVEPKAYVTEFRVGEDALLDVGAELSADHFLAGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D++G T+ +GF G MKRW F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DIQGHTIGKGFAGAMKRWNFGGLRASHGVSISHRSHGSTGQRQDPGKVFKG 159
>gi|291457202|ref|ZP_06596592.1| 50S ribosomal protein L3 [Bifidobacterium breve DSM 20213 = JCM
1192]
gi|384197730|ref|YP_005583474.1| 50S ribosomal protein L3 [Bifidobacterium breve ACS-071-V-Sch8b]
gi|417941876|ref|ZP_12585157.1| 50S ribosomal protein L3 [Bifidobacterium breve CECT 7263]
gi|291381037|gb|EFE88555.1| 50S ribosomal protein L3 [Bifidobacterium breve DSM 20213 = JCM
1192]
gi|333109474|gb|AEF26490.1| 50S ribosomal protein L3 [Bifidobacterium breve ACS-071-V-Sch8b]
gi|339479842|gb|ABE96310.1| 50S ribosomal protein L3 [Bifidobacterium breve UCC2003]
gi|376167864|gb|EHS86683.1| 50S ribosomal protein L3 [Bifidobacterium breve CECT 7263]
Length = 213
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 78/173 (45%), Gaps = 13/173 (7%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
S R L+GK +G +W +NG TLV V N ++ + EE Y+
Sbjct: 2 SNRKALLGKKLGMSQVWDENGFFVPVTLVDVSTN-VVTAVKTEE----SDGYK------- 49
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
+ +G + DP+ TK G F +GV P++ L G L A F
Sbjct: 50 -AVQLGYGAIDPTKVTKPLAGHFAKAGVTPRRHLVEVRTDDVDQFEAGQELAADLFEEGT 108
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G T +GF G +KRWGFK THG K+ RR G + + A +R+ G
Sbjct: 109 EVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKG 161
>gi|373252351|ref|ZP_09540469.1| 50S ribosomal protein L3 [Nesterenkonia sp. F]
Length = 220
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 77/169 (45%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G +G +W ++ T+VQ D+++I I E +
Sbjct: 13 GLLGTKLGMTQVWDEDNNLVPVTVVQA-DSNVITQIRTAE------------NDGYSAVQ 59
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+G DP TK G F+ +GV P++ L + G L+ F + +DV
Sbjct: 60 IGYGQIDPRKVTKPLAGHFEKAGVTPRRHLVEIRTGDASEYEAGQDLSVESFETGQKVDV 119
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T +GF GVMKR GF G+ A+HG K+HR+ G I A RV+ G
Sbjct: 120 VGRTKGKGFAGVMKRHGFGGVGASHGQHKNHRKPGAIGGAATPGRVFKG 168
>gi|339018299|ref|ZP_08644437.1| LSU ribosomal protein L3P [Acetobacter tropicalis NBRC 101654]
gi|338752576|dbj|GAA07741.1| LSU ribosomal protein L3P [Acetobacter tropicalis NBRC 101654]
Length = 227
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 73/158 (46%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTGLI K +G L+ ++G T++ H+ + R Y
Sbjct: 2 RTGLIAKKLGMSRLFKEDGTHVPVTVL-----HVDDVQVVDVRTQERDGYT--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G TK G F + V PKK + F + DA L G L+AAHF + +
Sbjct: 49 VQLGLGKAKVKNVTKPNRGHFARTKVEPKKVVREFRVAEDAALEVGASLSAAHFVVGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G + +GF G MKRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTSKGKGFAGAMKRWNFAGLEATHGVSISHRSHGS 146
>gi|310288024|ref|YP_003939283.1| 50S ribosomal protein L3 [Bifidobacterium bifidum S17]
gi|311064897|ref|YP_003971623.1| 50S ribosomal protein L3 [Bifidobacterium bifidum PRL2010]
gi|313140865|ref|ZP_07803058.1| 50S ribosomal protein L3 [Bifidobacterium bifidum NCIMB 41171]
gi|390937451|ref|YP_006395010.1| 50S ribosomal protein L3 [Bifidobacterium bifidum BGN4]
gi|421733518|ref|ZP_16172622.1| 50S ribosomal protein L3 [Bifidobacterium bifidum LMG 13195]
gi|421736120|ref|ZP_16174967.1| 50S ribosomal protein L3 [Bifidobacterium bifidum IPLA 20015]
gi|309251961|gb|ADO53709.1| 50S ribosomal protein L3 [Bifidobacterium bifidum S17]
gi|310867217|gb|ADP36586.1| RplC 50S ribosomal protein L3 [Bifidobacterium bifidum PRL2010]
gi|313133375|gb|EFR50992.1| 50S ribosomal protein L3 [Bifidobacterium bifidum NCIMB 41171]
gi|389891064|gb|AFL05131.1| 50S ribosomal protein L3 [Bifidobacterium bifidum BGN4]
gi|407078554|gb|EKE51356.1| 50S ribosomal protein L3 [Bifidobacterium bifidum LMG 13195]
gi|407296584|gb|EKF16119.1| 50S ribosomal protein L3 [Bifidobacterium bifidum IPLA 20015]
Length = 217
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 13/168 (7%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
L+G+ +G +W +NG TLV V N ++ + EE + + +
Sbjct: 11 LLGRKLGMTQVWDENGFFVPVTLVDVSTN-VVTAVKSEETDGYK------------AIQI 57
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
G DP+ TK G F +GV P++ L A PG L+ F +DV
Sbjct: 58 GYGQIDPTKVTKPLAGHFAKAGVTPRRHLVEVRTEDAAEYEPGQELSIDAFAEGSEVDVT 117
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T +GF G +KRWGFK THG K+ RR G + + A +R+ G
Sbjct: 118 GTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKG 165
>gi|332669517|ref|YP_004452525.1| 50S ribosomal protein L3 [Cellulomonas fimi ATCC 484]
gi|332338555|gb|AEE45138.1| 50S ribosomal protein L3 [Cellulomonas fimi ATCC 484]
Length = 219
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 17/172 (9%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLG 175
T L+G +G LW NG T+V V N + ++ + + + + GE K
Sbjct: 11 TALLGTKLGMTQLWDDNGRLVPVTVVAVGTNVVTQVRSAETDGYAAVQLAF-GEIK---- 65
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREF 235
P+ TK G F+ +GV P++ + + A G LTAA F +
Sbjct: 66 ----------PTKVTKPLKGHFEKAGVTPRRHVAEIRTSDAAEFTLGQELTAAAFEAGQL 115
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G T +G GVMKR GF G+ A+HG ++HR+ G I + +RV+ G
Sbjct: 116 VDVIGTTKGKGTAGVMKRHGFAGVSASHGSHRNHRKPGSIGGASTPSRVFKG 167
>gi|367016429|ref|XP_003682713.1| mitochondrial 54S ribosomal protein YmL9 [Torulaspora delbrueckii]
gi|359750376|emb|CCE93502.1| hypothetical protein TDEL_0G01350 [Torulaspora delbrueckii]
Length = 271
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 90/173 (52%), Gaps = 15/173 (8%)
Query: 117 RTGLIGKIIGQYPLWMK-NGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLG 175
R G I K G P + + NG++ T++++ + ++ + EE +
Sbjct: 56 RCGAISKKEGMMPFFDETNGKRVAATVLKLDNVEVMMHRTVEE------------NGYIA 103
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPRE 234
C VG S P+ +++ G + + V PK+++ F I +A +LP GT + + F+ +
Sbjct: 104 CQ-VGYGSKHPAKVSRQLLGHYASKYVNPKEEVSEFRIKNNAGLLPLGTLIKPSFFKAGQ 162
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
++D++ ++ +GF GVMK++ FKG+ A+HGV+ HR GG R+ PG
Sbjct: 163 YVDLKSISKGKGFAGVMKKYNFKGLKASHGVSIMHRHGGSYGQNQDPGRILPG 215
>gi|225627703|ref|ZP_03785740.1| 50S ribosomal protein L3 [Brucella ceti str. Cudo]
gi|225617708|gb|EEH14753.1| 50S ribosomal protein L3 [Brucella ceti str. Cudo]
Length = 245
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 13/175 (7%)
Query: 113 TSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKR 172
T+ R+G+I + +G ++ GE T++++ + H++ E+ G
Sbjct: 6 TNPMRSGVIAQKLGMTRVYNDAGEHVPVTVLRMENCHVVAQRTVEK--------NGYTAV 57
Query: 173 KLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRP 232
+LG + ++ +K G F + V PK KL F ++PD +L G +TA HF
Sbjct: 58 QLGVGMAKVKN-----TSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVA 112
Query: 233 REFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 113 GQKVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKG 167
>gi|261219581|ref|ZP_05933862.1| 50S ribosomal protein L3 [Brucella ceti M13/05/1]
gi|261322076|ref|ZP_05961273.1| 50S ribosomal protein L3 [Brucella ceti M644/93/1]
gi|260924670|gb|EEX91238.1| 50S ribosomal protein L3 [Brucella ceti M13/05/1]
gi|261294766|gb|EEX98262.1| 50S ribosomal protein L3 [Brucella ceti M644/93/1]
Length = 237
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + H++ E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRVYNDAGEHVPVTILRMENCHVVAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ ++ +K G F + V PK KL F ++PD +L G +TA HF + +
Sbjct: 54 GMAKVKN-----TSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKG 159
>gi|261222395|ref|ZP_05936676.1| 50S ribosomal protein L3 [Brucella ceti B1/94]
gi|265998360|ref|ZP_06110917.1| 50S ribosomal protein L3 [Brucella ceti M490/95/1]
gi|260920979|gb|EEX87632.1| 50S ribosomal protein L3 [Brucella ceti B1/94]
gi|262552828|gb|EEZ08818.1| 50S ribosomal protein L3 [Brucella ceti M490/95/1]
Length = 237
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + H++ E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRVYNDAGEHVPVTVLRMENCHVVAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ ++ +K G F + V PK KL F ++PD +L G +TA HF + +
Sbjct: 54 GMAKVKN-----TSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGHHASHGNSITHRSHGSTGQRQDPGKVFKG 159
>gi|126274899|ref|XP_001387659.1| mitochondrial 54S ribosomal protein YmL9 [Scheffersomyces stipitis
CBS 6054]
gi|126213529|gb|EAZ63636.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 262
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 96/201 (47%), Gaps = 19/201 (9%)
Query: 88 PAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVD 147
P++++ + N L++ L+ + R GL+G G + + GE+ T++++
Sbjct: 17 PSMRTEVPVINHSLELSNLRKSLLN----RPGLLGIKRGMISWFTEAGEQFAATVIEIDS 72
Query: 148 NHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKK 207
+IK E +L+G ++ KE F+ +GV PK+
Sbjct: 73 CEVIKQKTVES-------------DGYWSVLLGQIDKLKNVNEKELV-KFEAAGVSPKQN 118
Query: 208 LCRFII-TPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVT 266
+ F + ++P GT L A +F + +D++ ++ +GF GVMKR GFKG+ A+HGV+
Sbjct: 119 IGEFRVRDKSGLIPVGTELKADYFSVGQLVDIKAVSKGKGFAGVMKRHGFKGLNASHGVS 178
Query: 267 KSHRRGGCIASGAGKARVYPG 287
SHR G + RV PG
Sbjct: 179 LSHRSAGGMGGNQDPGRVLPG 199
>gi|153009286|ref|YP_001370501.1| 50S ribosomal protein L3 [Ochrobactrum anthropi ATCC 49188]
gi|166233170|sp|A6X0B8.1|RL3_OCHA4 RecName: Full=50S ribosomal protein L3
gi|151561174|gb|ABS14672.1| ribosomal protein L3 [Ochrobactrum anthropi ATCC 49188]
Length = 238
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + H++ E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRVYNDAGEHVPVTVLRMENCHVVAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L ++ +K G F + V PK K+ F ++PD +L G +TA HF + +
Sbjct: 54 GLAKVKN-----TSKAMRGHFAKAEVEPKAKVAEFRVSPDNLLEVGAEITAEHFVAGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFAGHRASHGNSITHRAHGSTGQRQDPGKVFKG 159
>gi|237815652|ref|ZP_04594649.1| 50S ribosomal protein L3 [Brucella abortus str. 2308 A]
gi|17982696|gb|AAL51938.1| lsu ribosomal protein l3p [Brucella melitensis bv. 1 str. 16M]
gi|237788950|gb|EEP63161.1| 50S ribosomal protein L3 [Brucella abortus str. 2308 A]
Length = 245
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 13/175 (7%)
Query: 113 TSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKR 172
T+ R+G+I + +G ++ GE T++++ + H++ E+ G
Sbjct: 6 TNPMRSGVIAQKLGMTRVYNDAGEHVPVTVLRMENCHVVAQRTVEK--------NGYTAV 57
Query: 173 KLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRP 232
+LG + ++ +K G F + V PK KL F ++PD +L G +TA HF
Sbjct: 58 QLGVGMAKVKN-----TSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVA 112
Query: 233 REFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 113 GQKVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKG 167
>gi|325964166|ref|YP_004242072.1| 50S ribosomal protein L3P [Arthrobacter phenanthrenivorans Sphe3]
gi|323470253|gb|ADX73938.1| LSU ribosomal protein L3P [Arthrobacter phenanthrenivorans Sphe3]
Length = 216
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
+T + GL+G +G +W +N + T+VQ D+++I + R
Sbjct: 1 MTATRNVKGLLGTKLGMTQVWDENNKLIPVTVVQA-DSNVITQL------------RNAE 47
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
+ +G DP TK G F+ +GV P++ + A G L+ F
Sbjct: 48 ADGYVAVQIGYGQIDPRKVTKPLAGHFEKAGVTPRRHVVELRTADAAEYELGQELSVEVF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +DV G T +GF GVMKR GF G+ A+HG K+HR+ G I + +RV+ G
Sbjct: 108 EAGQKIDVIGTTKGKGFAGVMKRHGFHGVGASHGAHKNHRKPGSIGGASTPSRVFKG 164
>gi|220913432|ref|YP_002488741.1| 50S ribosomal protein L3 [Arthrobacter chlorophenolicus A6]
gi|254803650|sp|B8HD06.1|RL3_ARTCA RecName: Full=50S ribosomal protein L3
gi|219860310|gb|ACL40652.1| ribosomal protein L3 [Arthrobacter chlorophenolicus A6]
Length = 216
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
+T + GL+G +G +W +N + T+VQ D+++I + E
Sbjct: 1 MTATRNVKGLLGTKLGMTQVWDENNKLIPVTVVQA-DSNVITQLRNAEVDGYV------- 52
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
+ +G DP TK G F+ +GV P++ + A G L+ F
Sbjct: 53 -----AVQIGYGQIDPRKVTKPLAGHFEKAGVTPRRHVVELRTADAAEYELGQELSVELF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +DV G T +GF GVMKR GF G+ A+HG K+HR+ G I + +RV+ G
Sbjct: 108 AAGQKIDVIGTTKGKGFAGVMKRHGFHGVGASHGAHKNHRKPGSIGGASTPSRVFKG 164
>gi|451942181|ref|YP_007462818.1| 50S ribosomal protein L3 [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
gi|451901568|gb|AGF76030.1| 50S ribosomal protein L3 [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
Length = 246
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + +I E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRIYNEAGEHVPVTVLRLENCQVIAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
++ T+ G F + V PK K+ F ++PD +L GT +T HF P + +
Sbjct: 54 GFAKVKN-----TTQALRGHFAKASVEPKAKIAEFRVSPDNLLDVGTEITVEHFVPGQRV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKG 159
>gi|385724448|gb|AFI74247.1| ribosomal protein L3, partial [Bradyrhizobium sp. ll1]
Length = 144
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 59/105 (56%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R E K L +G+ S K G F + V PK+++ F ++ D M+P G +
Sbjct: 25 HRTEEKNGYVALQLGSGSRKTVYMPKAERGQFAVAKVEPKRQVEEFRVSADQMIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHR 270
A HF +F+DV G +V +GF G +KRW F G+ ATHGV+ SHR
Sbjct: 85 LADHFVVGQFVDVTGTSVGKGFAGGIKRWNFGGLRATHGVSVSHR 129
>gi|227876215|ref|ZP_03994331.1| ribosomal protein L3 [Mobiluncus mulieris ATCC 35243]
gi|307701180|ref|ZP_07638202.1| 50S ribosomal protein L3 [Mobiluncus mulieris FB024-16]
gi|227843176|gb|EEJ53369.1| ribosomal protein L3 [Mobiluncus mulieris ATCC 35243]
gi|307613574|gb|EFN92821.1| 50S ribosomal protein L3 [Mobiluncus mulieris FB024-16]
Length = 218
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 77/168 (45%), Gaps = 13/168 (7%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
L+G+ +G +W + G+ T+V+V N + PE R Y L +
Sbjct: 12 LLGRKLGMTQVWDEEGKLVPVTVVEVEKNVVTDIRTPE-----RDGYT--------ALQL 58
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
G D TK G F SGV P++ L T G L A F +DV
Sbjct: 59 GFGQLDERKVTKPMAGHFAKSGVTPRRHLAEVRTTDAGSYELGQELGADLFETGALVDVT 118
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T +GF GVMKR GF+G+ ++HG ++HR+ G I + A RV+ G
Sbjct: 119 GNTKGKGFAGVMKRHGFQGVSSSHGAHRNHRKPGSIGACATPGRVFRG 166
>gi|255326842|ref|ZP_05367918.1| 50S ribosomal protein L3 [Rothia mucilaginosa ATCC 25296]
gi|283457543|ref|YP_003362126.1| 50S ribosomal protein L3 [Rothia mucilaginosa DY-18]
gi|422324306|ref|ZP_16405343.1| 50S ribosomal protein L3 [Rothia mucilaginosa M508]
gi|255296059|gb|EET75400.1| 50S ribosomal protein L3 [Rothia mucilaginosa ATCC 25296]
gi|283133541|dbj|BAI64306.1| ribosomal protein L3 [Rothia mucilaginosa DY-18]
gi|353344362|gb|EHB88674.1| 50S ribosomal protein L3 [Rothia mucilaginosa M508]
Length = 218
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G +G +W ++G+ T+V+ D++++ I +E +
Sbjct: 11 GLLGTKLGMTQVWDEDGKFVPVTVVKA-DSNVVTQIRNQETDGYE------------AVQ 57
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+G + D TK G F+ +GV P++ + + G LT F + +DV
Sbjct: 58 IGFGAIDSRKVTKPLAGHFEKAGVTPRRHIVELRTADASEYSLGQELTVELFEAGQKVDV 117
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T +GF GVMKR GFKG+ A+HG K+HR+ G I + ARV+ G
Sbjct: 118 VGKTKGKGFAGVMKRHGFKGVGASHGQHKNHRKPGSIGGASYPARVFKG 166
>gi|148560391|ref|YP_001259153.1| 50S ribosomal protein L3 [Brucella ovis ATCC 25840]
gi|161619189|ref|YP_001593076.1| 50S ribosomal protein L3 [Brucella canis ATCC 23365]
gi|163843499|ref|YP_001627903.1| 50S ribosomal protein L3 [Brucella suis ATCC 23445]
gi|256369657|ref|YP_003107167.1| 50S ribosomal protein L3 [Brucella microti CCM 4915]
gi|260566238|ref|ZP_05836708.1| ribosomal protein L3 [Brucella suis bv. 4 str. 40]
gi|261314046|ref|ZP_05953243.1| 50S ribosomal protein L3 [Brucella pinnipedialis M163/99/10]
gi|261317867|ref|ZP_05957064.1| 50S ribosomal protein L3 [Brucella pinnipedialis B2/94]
gi|261325320|ref|ZP_05964517.1| 50S ribosomal protein L3 [Brucella neotomae 5K33]
gi|261752542|ref|ZP_05996251.1| 50S ribosomal protein L3 [Brucella suis bv. 5 str. 513]
gi|261755201|ref|ZP_05998910.1| 50S ribosomal protein L3 [Brucella suis bv. 3 str. 686]
gi|261758425|ref|ZP_06002134.1| ribosomal protein L3 [Brucella sp. F5/99]
gi|265984291|ref|ZP_06097026.1| 50S ribosomal protein L3 [Brucella sp. 83/13]
gi|265988896|ref|ZP_06101453.1| 50S ribosomal protein L3 [Brucella pinnipedialis M292/94/1]
gi|294852570|ref|ZP_06793243.1| 50S ribosomal protein L3 [Brucella sp. NVSL 07-0026]
gi|306838043|ref|ZP_07470901.1| 50S ribosomal protein L3 [Brucella sp. NF 2653]
gi|306840301|ref|ZP_07473073.1| 50S ribosomal protein L3 [Brucella sp. BO2]
gi|306844137|ref|ZP_07476731.1| 50S ribosomal protein L3 [Brucella inopinata BO1]
gi|340790851|ref|YP_004756316.1| 50S ribosomal protein L3 [Brucella pinnipedialis B2/94]
gi|376276155|ref|YP_005116594.1| 50S ribosomal protein L3 [Brucella canis HSK A52141]
gi|166233122|sp|A5VR06.1|RL3_BRUO2 RecName: Full=50S ribosomal protein L3
gi|189042833|sp|A9M5Q0.1|RL3_BRUC2 RecName: Full=50S ribosomal protein L3
gi|189042834|sp|B0CH32.1|RL3_BRUSI RecName: Full=50S ribosomal protein L3
gi|148371648|gb|ABQ61627.1| ribosomal protein L3 [Brucella ovis ATCC 25840]
gi|161336000|gb|ABX62305.1| 50S ribosomal protein L3 [Brucella canis ATCC 23365]
gi|163674222|gb|ABY38333.1| 50S ribosomal protein L3 [Brucella suis ATCC 23445]
gi|255999819|gb|ACU48218.1| 50S ribosomal protein L3 [Brucella microti CCM 4915]
gi|260155756|gb|EEW90836.1| ribosomal protein L3 [Brucella suis bv. 4 str. 40]
gi|261297090|gb|EEY00587.1| 50S ribosomal protein L3 [Brucella pinnipedialis B2/94]
gi|261301300|gb|EEY04797.1| 50S ribosomal protein L3 [Brucella neotomae 5K33]
gi|261303072|gb|EEY06569.1| 50S ribosomal protein L3 [Brucella pinnipedialis M163/99/10]
gi|261738409|gb|EEY26405.1| ribosomal protein L3 [Brucella sp. F5/99]
gi|261742295|gb|EEY30221.1| 50S ribosomal protein L3 [Brucella suis bv. 5 str. 513]
gi|261744954|gb|EEY32880.1| 50S ribosomal protein L3 [Brucella suis bv. 3 str. 686]
gi|264661093|gb|EEZ31354.1| 50S ribosomal protein L3 [Brucella pinnipedialis M292/94/1]
gi|264662883|gb|EEZ33144.1| 50S ribosomal protein L3 [Brucella sp. 83/13]
gi|294821159|gb|EFG38158.1| 50S ribosomal protein L3 [Brucella sp. NVSL 07-0026]
gi|306275580|gb|EFM57312.1| 50S ribosomal protein L3 [Brucella inopinata BO1]
gi|306289700|gb|EFM60889.1| 50S ribosomal protein L3 [Brucella sp. BO2]
gi|306406967|gb|EFM63188.1| 50S ribosomal protein L3 [Brucella sp. NF 2653]
gi|340559310|gb|AEK54548.1| 50S ribosomal protein L3 [Brucella pinnipedialis B2/94]
gi|363404722|gb|AEW15017.1| 50S ribosomal protein L3 [Brucella canis HSK A52141]
Length = 237
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + H++ E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRVYNDAGEHVPVTVLRMENCHVVAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ ++ +K G F + V PK KL F ++PD +L G +TA HF + +
Sbjct: 54 GMAKVKN-----TSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKG 159
>gi|395793267|ref|ZP_10472672.1| 50S ribosomal protein L3 [Bartonella vinsonii subsp. arupensis
Pm136co]
gi|423713037|ref|ZP_17687297.1| 50S ribosomal protein L3 [Bartonella vinsonii subsp. arupensis
OK-94-513]
gi|395424663|gb|EJF90843.1| 50S ribosomal protein L3 [Bartonella vinsonii subsp. arupensis
OK-94-513]
gi|395431581|gb|EJF97599.1| 50S ribosomal protein L3 [Bartonella vinsonii subsp. arupensis
Pm136co]
Length = 246
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + +I E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRIYNEAGEHVPVTVLRLENCQVIAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
++ T+ G F + V PK K+ F ++PD +L GT +T HF P + +
Sbjct: 54 GFAKVKN-----TTQALRGHFAKASVEPKAKIAEFRVSPDNLLDVGTEITVEHFVPGQRV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKG 159
>gi|62290144|ref|YP_221937.1| 50S ribosomal protein L3 [Brucella abortus bv. 1 str. 9-941]
gi|82700067|ref|YP_414641.1| 50S ribosomal protein L3 [Brucella melitensis biovar Abortus 2308]
gi|161511150|ref|NP_539674.2| 50S ribosomal protein L3 [Brucella melitensis bv. 1 str. 16M]
gi|189024382|ref|YP_001935150.1| 50S ribosomal protein L3 [Brucella abortus S19]
gi|225852730|ref|YP_002732963.1| 50S ribosomal protein L3 [Brucella melitensis ATCC 23457]
gi|256263780|ref|ZP_05466312.1| ribosomal protein L3 [Brucella melitensis bv. 2 str. 63/9]
gi|260546692|ref|ZP_05822431.1| ribosomal protein L3 [Brucella abortus NCTC 8038]
gi|260565515|ref|ZP_05835999.1| ribosomal protein L3 [Brucella melitensis bv. 1 str. 16M]
gi|260754976|ref|ZP_05867324.1| 50S ribosomal protein L3 [Brucella abortus bv. 6 str. 870]
gi|260758192|ref|ZP_05870540.1| 50S ribosomal protein L3 [Brucella abortus bv. 4 str. 292]
gi|260762018|ref|ZP_05874361.1| 50S ribosomal protein L3 [Brucella abortus bv. 2 str. 86/8/59]
gi|260883985|ref|ZP_05895599.1| 50S ribosomal protein L3 [Brucella abortus bv. 9 str. C68]
gi|261214230|ref|ZP_05928511.1| 50S ribosomal protein L3 [Brucella abortus bv. 3 str. Tulya]
gi|265991310|ref|ZP_06103867.1| 50S ribosomal protein L3 [Brucella melitensis bv. 1 str. Rev.1]
gi|265995147|ref|ZP_06107704.1| 50S ribosomal protein L3 [Brucella melitensis bv. 3 str. Ether]
gi|297248539|ref|ZP_06932257.1| 50S ribosomal protein L3 [Brucella abortus bv. 5 str. B3196]
gi|376273037|ref|YP_005151615.1| 50S ribosomal protein L3 [Brucella abortus A13334]
gi|384211600|ref|YP_005600682.1| 50S ribosomal protein L3 [Brucella melitensis M5-90]
gi|384408708|ref|YP_005597329.1| 50S ribosomal protein3 [Brucella melitensis M28]
gi|384445288|ref|YP_005604007.1| 50S ribosomal protein L3 [Brucella melitensis NI]
gi|423166673|ref|ZP_17153376.1| 50S ribosomal protein L3 [Brucella abortus bv. 1 str. NI435a]
gi|423170953|ref|ZP_17157628.1| 50S ribosomal protein L3 [Brucella abortus bv. 1 str. NI474]
gi|423172965|ref|ZP_17159636.1| 50S ribosomal protein L3 [Brucella abortus bv. 1 str. NI486]
gi|423178342|ref|ZP_17164986.1| 50S ribosomal protein L3 [Brucella abortus bv. 1 str. NI488]
gi|423180383|ref|ZP_17167024.1| 50S ribosomal protein L3 [Brucella abortus bv. 1 str. NI010]
gi|423183515|ref|ZP_17170152.1| 50S ribosomal protein L3 [Brucella abortus bv. 1 str. NI016]
gi|423185545|ref|ZP_17172159.1| 50S ribosomal protein L3 [Brucella abortus bv. 1 str. NI021]
gi|423188680|ref|ZP_17175290.1| 50S ribosomal protein L3 [Brucella abortus bv. 1 str. NI259]
gi|42559669|sp|Q8YHP0.2|RL3_BRUME RecName: Full=50S ribosomal protein L3
gi|81309408|sp|Q57CQ8.1|RL3_BRUAB RecName: Full=50S ribosomal protein L3
gi|109893414|sp|Q2YM03.1|RL3_BRUA2 RecName: Full=50S ribosomal protein L3
gi|226725140|sp|B2S679.1|RL3_BRUA1 RecName: Full=50S ribosomal protein L3
gi|254803659|sp|C0RJK1.1|RL3_BRUMB RecName: Full=50S ribosomal protein L3
gi|62196276|gb|AAX74576.1| RplC, ribosomal protein L3 [Brucella abortus bv. 1 str. 9-941]
gi|82616168|emb|CAJ11211.1| Ribosomal protein L3 [Brucella melitensis biovar Abortus 2308]
gi|189019954|gb|ACD72676.1| Ribosomal protein L3 [Brucella abortus S19]
gi|225641095|gb|ACO01009.1| 50S ribosomal protein L3 [Brucella melitensis ATCC 23457]
gi|260095742|gb|EEW79619.1| ribosomal protein L3 [Brucella abortus NCTC 8038]
gi|260151583|gb|EEW86677.1| ribosomal protein L3 [Brucella melitensis bv. 1 str. 16M]
gi|260668510|gb|EEX55450.1| 50S ribosomal protein L3 [Brucella abortus bv. 4 str. 292]
gi|260672450|gb|EEX59271.1| 50S ribosomal protein L3 [Brucella abortus bv. 2 str. 86/8/59]
gi|260675084|gb|EEX61905.1| 50S ribosomal protein L3 [Brucella abortus bv. 6 str. 870]
gi|260873513|gb|EEX80582.1| 50S ribosomal protein L3 [Brucella abortus bv. 9 str. C68]
gi|260915837|gb|EEX82698.1| 50S ribosomal protein L3 [Brucella abortus bv. 3 str. Tulya]
gi|262766260|gb|EEZ12049.1| 50S ribosomal protein L3 [Brucella melitensis bv. 3 str. Ether]
gi|263002094|gb|EEZ14669.1| 50S ribosomal protein L3 [Brucella melitensis bv. 1 str. Rev.1]
gi|263093908|gb|EEZ17842.1| ribosomal protein L3 [Brucella melitensis bv. 2 str. 63/9]
gi|297175708|gb|EFH35055.1| 50S ribosomal protein L3 [Brucella abortus bv. 5 str. B3196]
gi|326409255|gb|ADZ66320.1| Ribosomal protein L3 [Brucella melitensis M28]
gi|326538963|gb|ADZ87178.1| 50S ribosomal protein L3 [Brucella melitensis M5-90]
gi|349743279|gb|AEQ08822.1| 50S ribosomal protein L3 [Brucella melitensis NI]
gi|363400643|gb|AEW17613.1| 50S ribosomal protein L3 [Brucella abortus A13334]
gi|374539531|gb|EHR11035.1| 50S ribosomal protein L3 [Brucella abortus bv. 1 str. NI474]
gi|374542904|gb|EHR14388.1| 50S ribosomal protein L3 [Brucella abortus bv. 1 str. NI435a]
gi|374543520|gb|EHR15002.1| 50S ribosomal protein L3 [Brucella abortus bv. 1 str. NI486]
gi|374545581|gb|EHR17042.1| 50S ribosomal protein L3 [Brucella abortus bv. 1 str. NI488]
gi|374548947|gb|EHR20394.1| 50S ribosomal protein L3 [Brucella abortus bv. 1 str. NI010]
gi|374549578|gb|EHR21021.1| 50S ribosomal protein L3 [Brucella abortus bv. 1 str. NI016]
gi|374558338|gb|EHR29731.1| 50S ribosomal protein L3 [Brucella abortus bv. 1 str. NI259]
gi|374559636|gb|EHR31021.1| 50S ribosomal protein L3 [Brucella abortus bv. 1 str. NI021]
Length = 237
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + H++ E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRVYNDAGEHVPVTVLRMENCHVVAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ ++ +K G F + V PK KL F ++PD +L G +TA HF + +
Sbjct: 54 GMAKVKN-----TSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKG 159
>gi|423712872|ref|ZP_17687170.1| 50S ribosomal protein L3 [Bartonella washoensis Sb944nv]
gi|395410568|gb|EJF77122.1| 50S ribosomal protein L3 [Bartonella washoensis Sb944nv]
Length = 246
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ +GE T++++ +I E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRIYNDSGEHVPVTVLRLESCQVIAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
++ +L G F + V PK K+ F ++PD +L GT +T HF P + +
Sbjct: 54 GFAKVKNTSKALR-----GHFAKASVEPKAKIAEFRVSPDNLLEVGTEITVEHFVPGQRV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKG 159
>gi|119963305|ref|YP_948657.1| 50S ribosomal protein L3 [Arthrobacter aurescens TC1]
gi|403528133|ref|YP_006663020.1| 50S ribosomal protein L3 [Arthrobacter sp. Rue61a]
gi|171704615|sp|A1R8U5.1|RL3_ARTAT RecName: Full=50S ribosomal protein L3
gi|119950164|gb|ABM09075.1| ribosomal protein L3 [Arthrobacter aurescens TC1]
gi|403230560|gb|AFR29982.1| 50S ribosomal protein L3 [Arthrobacter sp. Rue61a]
Length = 216
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
+T + GL+G +G +W +N + T+VQ D+++I + E
Sbjct: 1 MTATRNVKGLLGTKLGMTQVWDENNKLIPVTVVQA-DSNVITQLRNAEVDGYV------- 52
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
+ +G DP TK G F+ +GV P++ + A G L+ F
Sbjct: 53 -----AVQIGYGQIDPRKVTKPLAGHFEKAGVTPRRHVVELRTADAASYELGQELSVEIF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +DV G + +GF GVMKR GF G+ A+HG K+HR+ G I + +RV+ G
Sbjct: 108 EAGQKIDVVGTSKGKGFAGVMKRHGFHGVGASHGAHKNHRKPGSIGGASTPSRVFKG 164
>gi|431932148|ref|YP_007245194.1| 50S ribosomal protein L3 [Thioflavicoccus mobilis 8321]
gi|431830451|gb|AGA91564.1| 50S ribosomal protein L3, bacterial [Thioflavicoccus mobilis 8321]
Length = 217
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 15/171 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
G+IG+ G ++ +G T+++V N + + PE R YR +
Sbjct: 4 GIIGRKAGMTRIFTDDGATIPVTVIEVQPNRVAQLKTPE-----RDGYR--------AVQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD--AMLPPGTPLTAAHFRPREFL 236
V A + PS TK G F ++G+ + L F + L PG ++ + F P + +
Sbjct: 51 VAAGTRRPSRVTKPMAGHFASAGIEAGQHLHEFRLDDGDGEQLEPGAEVSISIFEPGQSV 110
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DVRG+T RGF GV++R F ATHG + SHR G I RV+ G
Sbjct: 111 DVRGVTKGRGFAGVIRRHNFSTQDATHGNSLSHRAPGSIGQNQSPGRVWKG 161
>gi|297625782|ref|YP_003687545.1| 50S ribosomal protein L3 [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296921547|emb|CBL56101.1| 50S ribosomal protein L3 [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
Length = 224
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 84/182 (46%), Gaps = 13/182 (7%)
Query: 106 LQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKP 165
++P +TT K GL+G +G LW +N T++Q + + P+
Sbjct: 1 MRPQNMTTEHKVKGLLGTKLGMTQLWDENNRLVPVTVIQAGPCVVTQVRTPDT------- 53
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
G +LG + A+S TK G F + V P+K L + + G L
Sbjct: 54 -DGYSAVQLGYGAIRAKS-----VTKPAAGQFARAKVTPRKYLAEIRTSDASEYTLGQEL 107
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
FR + +DV G+T +G GV+KRWGFKG+ A+HGV + HR G I + A V+
Sbjct: 108 GPDTFRTDDVVDVTGVTKGKGTAGVVKRWGFKGLGASHGVHRKHRSPGGIGACATPGHVF 167
Query: 286 PG 287
G
Sbjct: 168 KG 169
>gi|116671521|ref|YP_832454.1| 50S ribosomal protein L3 [Arthrobacter sp. FB24]
gi|171855202|sp|A0JZ84.1|RL3_ARTS2 RecName: Full=50S ribosomal protein L3
gi|116611630|gb|ABK04354.1| LSU ribosomal protein L3P [Arthrobacter sp. FB24]
Length = 216
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
+T + GL+G +G +W +N + T+VQ D+++I + R
Sbjct: 1 MTATRNVKGLLGTKLGMTQVWDENNKLIPVTVVQA-DSNVITQL------------RNAD 47
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
+ +G DP TK G F+ +GV P++ + A G L+ F
Sbjct: 48 VDGYVAVQIGYGQIDPRKVTKPLAGHFEKAGVTPRRHVVELRTADAAEYELGQELSVEVF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +DV G T +GF GVMKR GF G+ A+HG K+HR+ G I + +RV+ G
Sbjct: 108 EAGQKIDVVGTTKGKGFAGVMKRHGFHGVGASHGAHKNHRKPGSIGGASTPSRVFKG 164
>gi|146323695|ref|XP_752224.2| 50S ribosomal protein L3 [Aspergillus fumigatus Af293]
gi|129557582|gb|EAL90186.2| 50S ribosomal protein L3 [Aspergillus fumigatus Af293]
gi|159124862|gb|EDP49979.1| 50S ribosomal protein L3 [Aspergillus fumigatus A1163]
Length = 317
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 32/222 (14%)
Query: 85 CGAPAVKS-GIETYNTP----LKIEPLQPLEITTSSK-----------RTGLIGKIIGQY 128
G +V+S GI++ N P I P P+ +TS+ RTG I G
Sbjct: 45 TGNVSVRSFGIKSLNPPKPSRFNIGPELPVLKSTSTAALERKANTLPLRTGAIAIKKGMT 104
Query: 129 PLW-MKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPS 187
++ + G++ T++Q+ ++ + + N + VGA PS
Sbjct: 105 AVYDAETGKRIACTVLQLDRVQVVSHKTRQTHGYN-------------AVQVGAGWKHPS 151
Query: 188 LYTKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPREFLDVRGLTVDRG 246
TK G F +GV PK+ + F + ++ +LP G + A F+ +++D R + +G
Sbjct: 152 NVTKSLLGHFSTNGVSPKRHVYEFRVKDESGLLPVGQTINADWFQEGQYVDARSYSKGKG 211
Query: 247 FQGVMKRWGFKGMPATHGVTKSHRRGGCIA-SGAGKARVYPG 287
F GVMKR GF G +HGV+ +HR G S G +RVYPG
Sbjct: 212 FAGVMKRHGFHGQDRSHGVSLTHRSLGSAGPSQGGGSRVYPG 253
>gi|395779754|ref|ZP_10460223.1| 50S ribosomal protein L3 [Bartonella washoensis 085-0475]
gi|395420129|gb|EJF86414.1| 50S ribosomal protein L3 [Bartonella washoensis 085-0475]
Length = 246
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ +GE T++++ +I E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRIYNDSGEHVPVTVLRLESCQVIAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
++ +L G F + V PK K+ F ++PD +L GT +T HF P + +
Sbjct: 54 GFAKVKNTSKALR-----GHFAKASVEPKAKIAEFRVSPDNLLEVGTEITVEHFVPGQRV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKG 159
>gi|359791888|ref|ZP_09294721.1| 50S ribosomal protein L3 [Mesorhizobium alhagi CCNWXJ12-2]
gi|359252044|gb|EHK55341.1| 50S ribosomal protein L3 [Mesorhizobium alhagi CCNWXJ12-2]
Length = 237
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRVYNDAGEHVPVTVLRMENCQVVAQRTKEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L ++ S+ G F + V PK K+ F ++ D ML G +T H+ P + +
Sbjct: 54 GLAKVKNTSKSMR-----GHFAAASVEPKSKVAEFRVSDDNMLDIGAEITVEHYVPGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GFQGV+KR F G ATHG + SHR G +V+ G
Sbjct: 109 DVTGTTIGKGFQGVIKRHNFGGGRATHGNSVSHRTHGSTGQRQDPGKVFKG 159
>gi|385724216|gb|AFI74131.1| ribosomal protein L3, partial [Bradyrhizobium sp. Tv2a-2]
gi|385724218|gb|AFI74132.1| ribosomal protein L3, partial [Bradyrhizobium sp. tv3b.3]
Length = 144
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+R + K L +G+ S K G F + V PK+ + F ++ DA++P G +
Sbjct: 25 HRTKEKNGYVALQLGSGSRKTVYMPKAERGQFAVAKVEPKRDVQEFRVSEDALIPVGAEI 84
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK 281
A HF +F+DV G ++ +GF G MKRW F G+ ATHGV+ SHR I S G+
Sbjct: 85 QADHFVVGQFVDVTGTSIGKGFAGGMKRWNFGGLRATHGVSVSHR---SIGSTGGR 137
>gi|293190259|ref|ZP_06608755.1| 50S ribosomal protein L3 [Actinomyces odontolyticus F0309]
gi|292821075|gb|EFF80028.1| 50S ribosomal protein L3 [Actinomyces odontolyticus F0309]
Length = 221
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 13/168 (7%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
L+G+ +G +W +G T+VQV N ++ + +E G +LG +
Sbjct: 15 LLGRKLGMTQVWDADGHLVPLTVVQVGTN-VVTQVRTDEVD-------GYSAIQLGFGEI 66
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
D TK G F+ +GV P++ L + G L A F E +DV
Sbjct: 67 -----DSRKVTKPLQGHFEKAGVAPRRHLVEVRTSEQDSFELGQELDATTFEAGEGVDVS 121
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T +GF GVMKR GF G+ A+HG ++HR+ G I + A R++ G
Sbjct: 122 GTTKGKGFAGVMKRHGFAGVSASHGAHRNHRKPGSIGACATPGRIFKG 169
>gi|23502110|ref|NP_698237.1| 50S ribosomal protein L3 [Brucella suis 1330]
gi|376280904|ref|YP_005154910.1| 50S ribosomal protein L3 [Brucella suis VBI22]
gi|384224898|ref|YP_005616062.1| 50S ribosomal protein L3 [Brucella suis 1330]
gi|42559647|sp|Q8G076.1|RL3_BRUSU RecName: Full=50S ribosomal protein L3
gi|23348070|gb|AAN30152.1| ribosomal protein L3 [Brucella suis 1330]
gi|343383078|gb|AEM18570.1| 50S ribosomal protein L3 [Brucella suis 1330]
gi|358258503|gb|AEU06238.1| 50S ribosomal protein L3 [Brucella suis VBI22]
Length = 237
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + H++ E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRVYNDAGEHVPVTVLRMENCHVVAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ ++ +K G F + V PK KL F ++PD +L G +TA HF + +
Sbjct: 54 GVAKVKN-----TSKAMRGHFAKAEVEPKAKLAEFRVSPDNLLEVGVEITAEHFVAGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRSHGSTGQRQDPGKVFKG 159
>gi|240850835|ref|YP_002972235.1| 50S ribosomal protein L3 [Bartonella grahamii as4aup]
gi|240267958|gb|ACS51546.1| 50S ribosomal protein L3 [Bartonella grahamii as4aup]
Length = 245
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRIYNDAGEHVPVTVLRLENCQVVAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
++ +L G F + V PK K+ F ++PD +L GT +T HF P + +
Sbjct: 54 GFAKVKNTSQALR-----GHFAKASVEPKAKIAEFRVSPDNLLDVGTEITVEHFVPGQRV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKG 159
>gi|395765124|ref|ZP_10445740.1| 50S ribosomal protein L3 [Bartonella sp. DB5-6]
gi|395412977|gb|EJF79456.1| 50S ribosomal protein L3 [Bartonella sp. DB5-6]
Length = 246
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRIYNEAGEHVPVTVLRLENCQVVAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
++ +L G F + V PK K+ F ++PD +L GT +T HF P + +
Sbjct: 54 GFAKVKNTSQALR-----GHFAKASVEPKAKIAEFRVSPDNLLDIGTEITVEHFVPGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKG 159
>gi|401407737|ref|XP_003883317.1| putative ribosomal protein L3p [Neospora caninum Liverpool]
gi|325117734|emb|CBZ53285.1| putative ribosomal protein L3p [Neospora caninum Liverpool]
Length = 407
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 15/177 (8%)
Query: 102 KIEPL-QPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFK 160
+I PL + + + +S+RTGL+ IG LW GE+ T+ QV D ++ E+
Sbjct: 137 RIHPLLKRVTPSWNSRRTGLLAYKIGMMSLWDGWGERHAVTVCQV-DRCVVM----EQRT 191
Query: 161 PNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLP 220
++ Y C++ G TK G++ S + PK ++ F + D +LP
Sbjct: 192 LDKDGYEA-------CVM-GIGYQPIHKVTKPMLGVYIRSRIEPKSRIAEFKCSSDCLLP 243
Query: 221 PGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGV-TKSHRRGGCIA 276
G ++ HF P + + V G + D+G+ GV KRWGF G A+HGV K+H G I
Sbjct: 244 VGHEMSVRHFTPGQHVFVSGWSKDKGYLGVKKRWGFAGQNASHGVEAKAHSSPGSIG 300
>gi|184200262|ref|YP_001854469.1| 50S ribosomal protein L3 [Kocuria rhizophila DC2201]
gi|212288402|sp|B2GIL4.1|RL3_KOCRD RecName: Full=50S ribosomal protein L3
gi|183580492|dbj|BAG28963.1| 50S ribosomal protein L3 [Kocuria rhizophila DC2201]
Length = 218
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 15/179 (8%)
Query: 111 ITTSSKRT--GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRG 168
+TT+ +R GL+G +G +W +NG+ T+V+ D++++ + R
Sbjct: 1 MTTTFERQVKGLLGTKLGMTQVWDENGKFVPVTVVKA-DSNVVTQL------------RN 47
Query: 169 EPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAA 228
K + +G + DP TK G F +GV P++ + + A G L+
Sbjct: 48 TDKDGYNAVQIGFGAIDPRKVTKPLAGHFAAAGVTPRRHVVELRTSDAAEYELGQELSVE 107
Query: 229 HFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F +DV G T +G GVMKR GF G+ A+HG K+HR+ G I + ARV+ G
Sbjct: 108 LFEAGAKVDVVGTTKGKGTAGVMKRHGFSGVGASHGAHKNHRKPGSIGGASYPARVFKG 166
>gi|269976879|ref|ZP_06183853.1| 50S ribosomal protein L3 [Mobiluncus mulieris 28-1]
gi|306819491|ref|ZP_07453198.1| 50S ribosomal protein L3 [Mobiluncus mulieris ATCC 35239]
gi|269934710|gb|EEZ91270.1| 50S ribosomal protein L3 [Mobiluncus mulieris 28-1]
gi|304647783|gb|EFM45101.1| 50S ribosomal protein L3 [Mobiluncus mulieris ATCC 35239]
Length = 218
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 77/168 (45%), Gaps = 13/168 (7%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
L+G+ +G +W + G+ T+V+V N + PE R Y L +
Sbjct: 12 LLGRKLGMTQVWDEEGKLVPVTVVEVEKNVVTDIRTPE-----RDGYT--------ALQL 58
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
G D TK G F SGV P++ L T G L A F +DV
Sbjct: 59 GFGQLDERKVTKPMAGHFAKSGVTPRRHLAEVRTTDADSYELGQELGADLFETGALVDVT 118
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T +GF GVMKR GF+G+ ++HG ++HR+ G I + A RV+ G
Sbjct: 119 GNTKGKGFAGVMKRHGFQGVSSSHGAHRNHRKPGSIGACATPGRVFRG 166
>gi|88854682|ref|ZP_01129348.1| 50S ribosomal protein L3 [marine actinobacterium PHSC20C1]
gi|88815843|gb|EAR25699.1| 50S ribosomal protein L3 [marine actinobacterium PHSC20C1]
Length = 216
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 15/179 (8%)
Query: 109 LEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRG 168
+ IT ++K GL+GK +G +W +N + T+V++ N + + PE
Sbjct: 1 MSITKTTK--GLLGKKLGMTQVWDENNKLVPVTVVEITPNVVTQLRTPEV---------- 48
Query: 169 EPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAA 228
+ + DP K G F +GV P++ + + A G L
Sbjct: 49 ---DGYSAVQIAYGQIDPRKVNKPLTGHFDKAGVTPRRHITEIRTSDAADYTVGQELAVD 105
Query: 229 HFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F P +DV G + +GF GVMKR FKG+ A+HG ++HR+ G I + + +RV+ G
Sbjct: 106 IFTPGSKVDVVGTSKGKGFAGVMKRHNFKGVSASHGSHRNHRKPGSIGASSTPSRVFKG 164
>gi|403530690|ref|YP_006665219.1| 50S ribosomal protein L3 [Bartonella quintana RM-11]
gi|403232761|gb|AFR26504.1| 50S ribosomal protein L3 [Bartonella quintana RM-11]
Length = 246
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + +I E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRVYNDAGEHVPVTVLRLENCQVIAQRTIEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
++ +L G F V PK K+ F ++PD +L GT +TA HF P + +
Sbjct: 54 GFAKVKNTSRALR-----GHFAKVSVEPKAKIAEFRVSPDNLLDIGTEITAQHFVPGQRV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFSGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKG 159
>gi|182678337|ref|YP_001832483.1| 50S ribosomal protein L3 [Beijerinckia indica subsp. indica ATCC
9039]
gi|226725134|sp|B2IK62.1|RL3_BEII9 RecName: Full=50S ribosomal protein L3
gi|182634220|gb|ACB94994.1| ribosomal protein L3 [Beijerinckia indica subsp. indica ATCC 9039]
Length = 240
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ ++ + E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRVFTDAGEHIPVTVLKLDGCQVVGHRTKEQ--------NGYVAVQLGI 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
++ +K G F + V PK KL F + +LP G +TA HF +F+
Sbjct: 54 GRAKVKN-----VSKAERGRFAVAKVEPKLKLAEFRVDDATLLPIGAEITADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G + +GF G MKRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTSTGKGFAGAMKRWNFGGLRATHGVSISHRSHGS 146
>gi|395782720|ref|ZP_10463092.1| 50S ribosomal protein L3 [Bartonella rattimassiliensis 15908]
gi|395416598|gb|EJF82968.1| 50S ribosomal protein L3 [Bartonella rattimassiliensis 15908]
Length = 245
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRIYNDAGEHVPVTVLRLENCQVVAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
++ +L G F + V PK K+ F ++PD +L GT +T HF P + +
Sbjct: 54 GFAKVKNTSQALR-----GHFAKASVEPKAKIAEFRVSPDNLLDVGTEITVEHFVPGQRV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKG 159
>gi|319899099|ref|YP_004159192.1| 50S ribosomal protein L3 [Bartonella clarridgeiae 73]
gi|319403063|emb|CBI76618.1| 50S ribosomal protein L3 [Bartonella clarridgeiae 73]
Length = 246
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ ++ E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRIYNDAGEHVPVTVLRLDKCQVVAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L ++ +L G F + V PK K+ F ++PD +L GT +T HF P + +
Sbjct: 54 GLAKVKNTSRALR-----GHFAKAAVEPKAKIAEFRVSPDNLLDVGTEITVEHFVPGQRV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKG 159
>gi|395787643|ref|ZP_10467235.1| 50S ribosomal protein L3 [Bartonella birtlesii LL-WM9]
gi|395410265|gb|EJF76820.1| 50S ribosomal protein L3 [Bartonella birtlesii LL-WM9]
Length = 246
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRIYNEAGEHVPVTVLRLENCQVVAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
++ +L G F + V PK K+ F ++PD +L GT +T HF P + +
Sbjct: 54 GFAKVKNTSKALR-----GHFAKASVEPKAKIAEFRVSPDNLLDIGTEITVEHFVPGQRV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D+ G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DITGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKG 159
>gi|365825951|ref|ZP_09367899.1| 50S ribosomal protein L3 [Actinomyces graevenitzii C83]
gi|365257432|gb|EHM87476.1| 50S ribosomal protein L3 [Actinomyces graevenitzii C83]
Length = 216
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 90/180 (50%), Gaps = 19/180 (10%)
Query: 111 ITTSSK-RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYR 167
+TT +K R L+G +G +W +NG T+V+V N + ++ + + ++ + +
Sbjct: 1 MTTQNKSRKALLGTKLGMTQIWDENGVLRPVTVVRVDTNVVTQLRTVENDGYEAVQLAF- 59
Query: 168 GEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTA 227
GE K + TK G F +GV P++ + I T L G LTA
Sbjct: 60 GELK--------------ENKVTKPMAGHFAKAGVSPRRHVAE-IRTSVEGLELGQELTA 104
Query: 228 AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F E +DV G T +GF GVMKR GFKG+ A+HG ++HR+ G + + A R++ G
Sbjct: 105 EVFADGELVDVTGTTKGKGFAGVMKRHGFKGVSASHGAHRNHRKPGSVGACATPGRIFKG 164
>gi|119188359|ref|XP_001244786.1| mitochondrial 54S ribosomal protein YmL9 [Coccidioides immitis RS]
gi|392871503|gb|EAS33421.2| 50S ribosomal protein L3 [Coccidioides immitis RS]
Length = 298
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPRE 234
+ VGA S TK G F +GV PK+ + F + +A +LP G + A F+ +
Sbjct: 120 AVQVGAGWKHESNVTKPMLGHFAANGVSPKRYVEEFRVRDEAGLLPVGQMINADWFQEGQ 179
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIA-SGAGKARVYPG 287
F+DVR + GF GVMKRWGF G +HGV+ +HR G S G +RVYPG
Sbjct: 180 FVDVRSKSRGMGFTGVMKRWGFHGQDRSHGVSLTHRSLGTTGPSQGGGSRVYPG 233
>gi|85709057|ref|ZP_01040123.1| 50S ribosomal protein L3 [Erythrobacter sp. NAP1]
gi|85690591|gb|EAQ30594.1| 50S ribosomal protein L3 [Erythrobacter sp. NAP1]
Length = 273
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 14/172 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++ + D ++ + R
Sbjct: 2 RTGVIAKKVGMTRLFQEDGRHVPVTVLALEDCQVVSH-------------RTADNDGYFA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRF-IITPDAMLPPGTPLTAAHFRPREF 235
+ +GA K F +GV K+++ F + + ++P G+ ++A HF +
Sbjct: 49 VQLGAGEAKQKNVAKPQREHFGKAGVGLKQRVAEFRVENEEGLVPVGSLISADHFVAGQK 108
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+D+ G T +GF G MKRWGF G+ ATHGV+ SHR G + RV+ G
Sbjct: 109 VDITGHTQGKGFAGAMKRWGFGGLRATHGVSISHRSHGSTGNRQDPGRVFKG 160
>gi|119501322|ref|XP_001267418.1| mitochondrial 54S ribosomal protein YmL9 [Neosartorya fischeri NRRL
181]
gi|119415583|gb|EAW25521.1| 50S ribosomal protein L3 [Neosartorya fischeri NRRL 181]
Length = 297
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPRE 234
+ VGA PS TK G F +GV PK+ + F + ++ +LP G + A F+ +
Sbjct: 120 AVQVGAGWKHPSNVTKSLLGHFSTNGVSPKRHIYEFRVKDESGLLPVGQTINADWFQEGQ 179
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIA-SGAGKARVYPG 287
++D R + +GF GVMKR GF G +HGV+ +HR G S G +RVYPG
Sbjct: 180 YVDARSNSKGKGFAGVMKRHGFHGQDRSHGVSLTHRSLGSAGPSQGGGSRVYPG 233
>gi|294085958|ref|YP_003552718.1| 50S ribosomal protein L3 [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292665533|gb|ADE40634.1| 50S ribosomal protein L3 [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 275
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + G T++++ D ++ K G +LG
Sbjct: 2 RSGIIARKLGMTRVFNEAGHHVPVTVLKMDDVQVVSV--------RNKQVDGYTAVQLGA 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ A++ +K G F + V PK KL F ++ DA+L G L +HF + +
Sbjct: 54 GMAKAKN-----VSKPMRGHFAKANVLPKSKLVEFRVSDDAVLDVGATLVPSHFVAGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DVVGTTQGKGFAGAMKRHNFAGLRASHGVSISHRSHGSTGQCQDPGKVFKG 159
>gi|395777951|ref|ZP_10458464.1| 50S ribosomal protein L3 [Bartonella elizabethae Re6043vi]
gi|423715877|ref|ZP_17690098.1| 50S ribosomal protein L3 [Bartonella elizabethae F9251]
gi|395418260|gb|EJF84587.1| 50S ribosomal protein L3 [Bartonella elizabethae Re6043vi]
gi|395429179|gb|EJF95253.1| 50S ribosomal protein L3 [Bartonella elizabethae F9251]
Length = 245
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRIYNDAGEHVPVTVLRLENCQVVAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
++ +L G F + V PK K+ F ++PD +L GT +T HF P + +
Sbjct: 54 GFAKVKNTSQALR-----GHFAKASVEPKAKIAEFRVSPDNLLDIGTEITVEHFVPGQRV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKG 159
>gi|49474404|ref|YP_032446.1| 50S ribosomal protein L3 [Bartonella quintana str. Toulouse]
gi|81827601|sp|Q6FZC2.1|RL3_BARQU RecName: Full=50S ribosomal protein L3
gi|49239908|emb|CAF26306.1| 50s ribosomal protein l3 [Bartonella quintana str. Toulouse]
Length = 246
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + +I E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRVYNDAGEHVPVTVLRLENCQVIAQRTIEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
++ +L G F V PK K+ F ++PD +L GT +TA HF P + +
Sbjct: 54 GFAKVKNTSRALR-----GHFAKVSVEPKAKIAEFRVSPDNLLDIGTEITAQHFVPGQRV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKG 159
>gi|366987837|ref|XP_003673685.1| hypothetical protein NCAS_0A07460 [Naumovozyma castellii CBS 4309]
gi|342299548|emb|CCC67304.1| hypothetical protein NCAS_0A07460 [Naumovozyma castellii CBS 4309]
Length = 269
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 15/203 (7%)
Query: 87 APAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWM-KNGEKCRTTLVQV 145
AP+V++ + + P Q KR G+I + G P + + G + T++QV
Sbjct: 28 APSVRNTTKLEQPIINHSPEQAASRKWLPKRCGIITEKKGMVPYFDPETGRRIGATILQV 87
Query: 146 VDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPK 205
+ ++ + E C VG + D T++ G F + V PK
Sbjct: 88 NNVEVLMH------------KTAETDGYYACQ-VGYGAKDYKKVTRQMLGHFASKYVNPK 134
Query: 206 KKLCRF-IITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHG 264
K+ F + P+ +LP GT L + F+ +++D++ + +GF GVMK++ FKG+ A+HG
Sbjct: 135 LKVSEFRVKAPEGLLPLGTVLKPSFFKEGQYIDIKSTSKGKGFAGVMKKYHFKGLRASHG 194
Query: 265 VTKSHRRGGCIASGAGKARVYPG 287
+ HR GG RV PG
Sbjct: 195 TSIMHRHGGSYGQNQDPGRVLPG 217
>gi|407771095|ref|ZP_11118458.1| 50S ribosomal protein L3 [Thalassospira xiamenensis M-5 = DSM
17429]
gi|407285984|gb|EKF11477.1| 50S ribosomal protein L3 [Thalassospira xiamenensis M-5 = DSM
17429]
Length = 238
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%)
Query: 195 GLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRW 254
G F + V PK KL F ++ DA++ G L+A HF +++DV G ++ +GF G MKR
Sbjct: 67 GHFAKAKVEPKAKLAEFRVSEDALIEVGAELSATHFVEGQYVDVIGTSIGKGFAGAMKRH 126
Query: 255 GFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F G+ A+HGV+ SHR G RV+ G
Sbjct: 127 NFGGLRASHGVSVSHRSHGSTGQCQDPGRVFKG 159
>gi|395789500|ref|ZP_10469020.1| 50S ribosomal protein L3 [Bartonella taylorii 8TBB]
gi|395430043|gb|EJF96095.1| 50S ribosomal protein L3 [Bartonella taylorii 8TBB]
Length = 247
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRIYNEAGEHVPVTVLRLENCQVVAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
++ +L G F + V PK K+ F ++PD +L GT +T HF P + +
Sbjct: 54 GFAKVKNTSRALR-----GHFAKASVEPKAKIAEFRVSPDNLLDIGTEITVEHFVPGQRV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKG 159
>gi|337269081|ref|YP_004613136.1| 50S ribosomal protein L3 [Mesorhizobium opportunistum WSM2075]
gi|336029391|gb|AEH89042.1| 50S ribosomal protein L3 [Mesorhizobium opportunistum WSM2075]
Length = 237
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G ++ GE T++Q+ + ++ E+ G +LG
Sbjct: 2 RSGVIAKKVGMTRIYNDAGEHVPVTVLQMENCQVVAQRTQEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L ++ +K G F + V PK K+ F ++ D M+ G +T HF + +
Sbjct: 54 GLAKVKN-----TSKALRGHFATASVEPKAKVAEFRVSADNMIDVGAEITVEHFVAGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GFQGV+KR G ATHG + SHR G +V+ G
Sbjct: 109 DVTGTTIGKGFQGVIKRHHMGGGRATHGNSVSHRTHGSTGQRQDPGKVFKG 159
>gi|303316364|ref|XP_003068184.1| mitochondrial 54S ribosomal protein YmL9 [Coccidioides posadasii
C735 delta SOWgp]
gi|240107865|gb|EER26039.1| 54S ribosomal protein L9, mitochondrial precursor, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|320037921|gb|EFW19857.1| 50S ribosomal protein L3 [Coccidioides posadasii str. Silveira]
Length = 291
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPRE 234
+ VGA S TK G F +GV PK+ + F + +A +LP G + A F+ +
Sbjct: 120 AVQVGAGWKHESNVTKPMLGHFAANGVSPKRYVEEFRVRDEAGLLPIGQMINADWFQEGQ 179
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIA-SGAGKARVYPG 287
F+DVR + GF GVMKRWGF G +HGV+ +HR G S G +RVYPG
Sbjct: 180 FVDVRSKSRGMGFTGVMKRWGFHGQDRSHGVSLTHRSLGTTGPSQGGGSRVYPG 233
>gi|163868650|ref|YP_001609859.1| 50S ribosomal protein L3 [Bartonella tribocorum CIP 105476]
gi|189042832|sp|A9IW27.1|RL3_BART1 RecName: Full=50S ribosomal protein L3
gi|161018306|emb|CAK01864.1| 50S ribosomal protein L3 [Bartonella tribocorum CIP 105476]
Length = 245
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRIYNDAGEHVPVTVLRLENCQVVAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
++ +L G F + V PK K+ F ++PD +L GT +T HF P + +
Sbjct: 54 GFAKVKNTSQALR-----GHFAKASVEPKAKIAEFRVSPDNLLDIGTEITVEHFVPGQRV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKG 159
>gi|395790886|ref|ZP_10470345.1| 50S ribosomal protein L3 [Bartonella alsatica IBS 382]
gi|395409182|gb|EJF75781.1| 50S ribosomal protein L3 [Bartonella alsatica IBS 382]
Length = 246
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ K GE T++++ + ++ R K
Sbjct: 2 RSGVIAQKLGMTRIYNKAGEHVPVTVLRLENCQVV-------------AQRTVEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G ++ G F + V PK K+ F ++PD +L GT +T HF P + +
Sbjct: 49 VQLGVGFAKIKNTSRPLRGHFAKASVEPKAKMAEFRVSPDNLLDVGTEITVEHFVPGQRV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKG 159
>gi|239832122|ref|ZP_04680451.1| 50S ribosomal protein L3 [Ochrobactrum intermedium LMG 3301]
gi|239824389|gb|EEQ95957.1| 50S ribosomal protein L3 [Ochrobactrum intermedium LMG 3301]
Length = 246
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 13/175 (7%)
Query: 113 TSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKR 172
T+ R+G+I + +G ++ GE T++++ + H++ E+ G
Sbjct: 6 TNPMRSGVIAQKLGMTRVYNDAGEHVPVTVLRMENCHVVAQRTVEK--------NGYTAV 57
Query: 173 KLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRP 232
+LG + ++ +K G F + V PK K+ F ++PD +L G +TA HF
Sbjct: 58 QLGVGIAKVKN-----TSKAMRGHFAKAEVEPKAKVAEFRVSPDNLLEVGAEITAEHFVA 112
Query: 233 REFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 113 GQKVDVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQRQDPGKVFKG 167
>gi|13470551|ref|NP_102120.1| 50S ribosomal protein L3 [Mesorhizobium loti MAFF303099]
gi|42559683|sp|Q98N57.1|RL3_RHILO RecName: Full=50S ribosomal protein L3
gi|14021293|dbj|BAB47906.1| 50S ribosomal protein L3 [Mesorhizobium loti MAFF303099]
Length = 237
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G ++ GE T++Q+ + ++ E+ G +LG
Sbjct: 2 RSGVIAKKVGMTRIYNDAGEHVPVTVLQMENCQVVAQRTQEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L ++ +K G F + V PK K+ F ++ D M+ G +T HF + +
Sbjct: 54 GLAKVKN-----TSKAMRGHFATASVEPKAKVAEFRVSADNMIDVGAEITVEHFVAGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GFQGV+KR G ATHG + SHR G +V+ G
Sbjct: 109 DVTGTTIGKGFQGVIKRHHMGGGRATHGNSVSHRTHGSTGQRQDPGKVFKG 159
>gi|296282582|ref|ZP_06860580.1| 50S ribosomal protein L3 [Citromicrobium bathyomarinum JL354]
Length = 278
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLV-----QVVDNHIIKYIPPEEFKPNRKPYRGEPK 171
RTG+I K +G L+ ++G T++ QV N +R Y
Sbjct: 2 RTGVIAKKVGMTRLFQEDGRHVPVTVLALEGCQVTANRT----------ADRDGYW---- 47
Query: 172 RKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIIT-PDAMLPPGTPLTAAHF 230
+ VG+ K F + V K K+ F + DA+LP G +TA HF
Sbjct: 48 ----SVQVGSGEAKQKNVNKPQREAFAKAEVGLKMKVAEFRVEGEDALLPVGATITADHF 103
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
+ +DV+G T +GF G MKRWGF G+ ATHGV+ SHR G + RV+
Sbjct: 104 IAGQKVDVQGYTQGKGFAGAMKRWGFGGLRATHGVSLSHRSHGSTGNRQDPGRVF 158
>gi|404318988|ref|ZP_10966921.1| 50S ribosomal protein L3 [Ochrobactrum anthropi CTS-325]
Length = 238
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + H++ E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRVYNDAGEHVPVTVLRMENCHVVAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L ++ +K G F + V PK K+ F ++PD +L G +TA HF + +
Sbjct: 54 GLAKVKN-----TSKAMRGHFAKAEVEPKAKVAEFRVSPDNLLEVGAEITAEHFVAGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G ++ +GF GVMKR F G A+HG + +HR G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFAGHRASHGNSITHRAHGS 146
>gi|237837257|ref|XP_002367926.1| ribosomal protein L3p, putative [Toxoplasma gondii ME49]
gi|211965590|gb|EEB00786.1| ribosomal protein L3p, putative [Toxoplasma gondii ME49]
gi|221509315|gb|EEE34884.1| 50S ribosomal protein L3, putative [Toxoplasma gondii VEG]
Length = 514
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 15/176 (8%)
Query: 102 KIEPL-QPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFK 160
KI PL + + + +S+RTGL+ IG LW GE+ T+ QV D ++ ++
Sbjct: 240 KIHPLLKKVTPSWNSRRTGLLAYKIGMMSLWDGWGERHAVTVCQV-DRCVVM----DQRT 294
Query: 161 PNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLP 220
++ Y C++ G TK G++ S + PK ++ F + D +LP
Sbjct: 295 LDKDGYEA-------CVM-GIGYKPIHKVTKPMLGVYIRSQIEPKSRIAEFKCSSDCLLP 346
Query: 221 PGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGV-TKSHRRGGCI 275
G ++ HF P + + V G + D+G+ GV KRWGF G A+HGV K+H G I
Sbjct: 347 VGHEMSVRHFTPGQQVFVSGWSKDKGYLGVKKRWGFAGQNASHGVEAKAHSSPGSI 402
>gi|433456016|ref|ZP_20414078.1| 50S ribosomal protein L3 [Arthrobacter crystallopoietes BAB-32]
gi|432196798|gb|ELK53223.1| 50S ribosomal protein L3 [Arthrobacter crystallopoietes BAB-32]
Length = 217
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 13/176 (7%)
Query: 112 TTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPK 171
TT+ + GL+G +G +W +N T+VQ D++++ + R
Sbjct: 3 TTTRQVKGLLGTKLGMTQVWDENNRLVPVTVVQA-DSNVVTQL------------RNADA 49
Query: 172 RKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFR 231
+ +G DP +K G F+ +GV P++ L + G L+ F
Sbjct: 50 DGYTAVQIGYGQIDPRKVSKPLAGHFEKAGVTPRRHLVELRTSDAESYELGQELSVETFE 109
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +DV G + +GF GVMKR GF G+ A+HG K+HR+ G I + RV+ G
Sbjct: 110 AGQKIDVVGTSKGKGFAGVMKRHGFSGVGASHGQHKNHRKPGSIGGASTPGRVFKG 165
>gi|444310462|ref|ZP_21146084.1| 50S ribosomal protein L3 [Ochrobactrum intermedium M86]
gi|443486270|gb|ELT49050.1| 50S ribosomal protein L3 [Ochrobactrum intermedium M86]
Length = 238
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + H++ E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRVYNDAGEHVPVTVLRMENCHVVAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ ++ +K G F + V PK K+ F ++PD +L G +TA HF + +
Sbjct: 54 GIAKVKN-----TSKAMRGHFAKAEVEPKAKVAEFRVSPDNLLEVGAEITAEHFVAGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQRQDPGKVFKG 159
>gi|154507864|ref|ZP_02043506.1| hypothetical protein ACTODO_00346 [Actinomyces odontolyticus ATCC
17982]
gi|153797498|gb|EDN79918.1| 50S ribosomal protein L3 [Actinomyces odontolyticus ATCC 17982]
Length = 221
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 13/168 (7%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
L+G+ +G +W +G T+VQV N ++ + +E G +LG +
Sbjct: 15 LLGRKLGMTQVWDADGHLVPLTVVQVGTN-VVTQVRTDEVD-------GYSAIQLGFGEI 66
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
D TK G F+ +GV P++ L + G L A F E +DV
Sbjct: 67 -----DSRKVTKPLQGHFEKAGVAPRRHLVEVRTSEHDSYELGQELDATTFEAGEGVDVS 121
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T +GF GVMKR GF G+ A+HG ++HR+ G I + A R++ G
Sbjct: 122 GTTKGKGFAGVMKRHGFAGVSASHGAHRNHRKPGSIGACATPGRIFKG 169
>gi|121601833|ref|YP_988997.1| 50S ribosomal protein L3 [Bartonella bacilliformis KC583]
gi|121602668|ref|YP_988967.1| 50S ribosomal protein L3 [Bartonella bacilliformis KC583]
gi|421760770|ref|ZP_16197584.1| 50S ribosomal protein L3 [Bartonella bacilliformis INS]
gi|421760800|ref|ZP_16197614.1| 50S ribosomal protein L3 [Bartonella bacilliformis INS]
gi|212288247|sp|A1USL4.1|RL3_BARBK RecName: Full=50S ribosomal protein L3
gi|120614010|gb|ABM44611.1| ribosomal protein L3 [Bartonella bacilliformis KC583]
gi|120614845|gb|ABM45446.1| ribosomal protein L3 [Bartonella bacilliformis KC583]
gi|411174538|gb|EKS44570.1| 50S ribosomal protein L3 [Bartonella bacilliformis INS]
gi|411174568|gb|EKS44600.1| 50S ribosomal protein L3 [Bartonella bacilliformis INS]
Length = 246
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE+ T++++ + +I E+ G +LG
Sbjct: 2 RSGVITQKLGMTSIYNDTGERVPVTVLRLENCQVIAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L E +K G F + V PK K+ F ++ D +L GT +T HF P + +
Sbjct: 54 GLAKFEK-----TSKALRGHFSKALVEPKAKIVEFRVSSDNLLDVGTEITVEHFVPGQRV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKG 159
>gi|189218695|ref|YP_001939336.1| ribosomal protein L3 [Methylacidiphilum infernorum V4]
gi|189185553|gb|ACD82738.1| Ribosomal protein L3 [Methylacidiphilum infernorum V4]
Length = 221
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 85/180 (47%), Gaps = 23/180 (12%)
Query: 114 SSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKP--YRGEPK 171
S K G++ + IG L+ G T++ N +++ E K R Y P+
Sbjct: 9 SMKGFGIMARKIGMTQLFDATGTMHPLTVLVAEPNVVVQCKKEGEGKEVRLQVGYEALPE 68
Query: 172 RKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFR 231
RKL +K G +K SG+ P++ L F+ + PG L + F
Sbjct: 69 RKL---------------SKPLLGHYKKSGISPRRHLKEFVFESEESWQPGQLLDVSRFN 113
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQ 291
E +DV G+T +GFQGV+K+ GF G PA+HG +K+HRR G I R +PG V +
Sbjct: 114 EGEKVDVIGITKGKGFQGVIKKHGFGGQPASHG-SKTHRRNGAIGE-----RSFPGRVFK 167
>gi|221488825|gb|EEE27039.1| 50S ribosomal protein L3, putative [Toxoplasma gondii GT1]
Length = 514
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 15/176 (8%)
Query: 102 KIEPL-QPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFK 160
KI PL + + + +S+RTGL+ IG LW GE+ T+ QV D ++ ++
Sbjct: 240 KIHPLLKKVTPSWNSRRTGLLAYKIGMMSLWDGWGERHAVTVCQV-DRCVVM----DQRT 294
Query: 161 PNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLP 220
++ Y C++ G TK G++ S + PK ++ F + D +LP
Sbjct: 295 LDKDGYEA-------CVM-GIGYKPIHKVTKPMLGVYIRSQIEPKSRIAEFKCSSDCLLP 346
Query: 221 PGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGV-TKSHRRGGCI 275
G ++ HF P + + V G + D+G+ GV KRWGF G A+HGV K+H G I
Sbjct: 347 VGHEMSVRHFTPGQQVFVSGWSKDKGYLGVKKRWGFAGQNASHGVEAKAHSSPGSI 402
>gi|392944818|ref|ZP_10310460.1| 50S ribosomal protein L3, bacterial [Frankia sp. QA3]
gi|392288112|gb|EIV94136.1| 50S ribosomal protein L3, bacterial [Frankia sp. QA3]
Length = 233
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 74/169 (43%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G +G +W N T+++ N + + P+ G +LG
Sbjct: 8 GLLGTKLGMTQVWDANNRVVPVTVIKAGPNVVTQVKTPDS--------DGYSAVQLGYGE 59
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+ DP K G F SGV P++ L A PG LT F P +DV
Sbjct: 60 I-----DPRKINKPARGHFATSGVTPRRHLVELRTADAANYRPGQELTGEVFVPGTVVDV 114
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +GF GVMKR GFKG+ A HGV + HR G + A RV+ G
Sbjct: 115 TGTSKGKGFAGVMKRHGFKGLGAGHGVERKHRSPGSVGGCATPGRVFKG 163
>gi|433775498|ref|YP_007305965.1| 50S ribosomal protein L3, bacterial [Mesorhizobium australicum
WSM2073]
gi|433667513|gb|AGB46589.1| 50S ribosomal protein L3, bacterial [Mesorhizobium australicum
WSM2073]
Length = 240
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G ++ GE T++Q+ + ++ E+ G +LG
Sbjct: 2 RSGVIAKKVGMTRIYNDAGEHVPVTVLQMENCQVVAQRTQEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L ++ +K G F + V PK K+ F ++ D M+ G +T HF + +
Sbjct: 54 GLAKVKN-----TSKAMRGHFATASVEPKAKVAEFRVSADNMIDVGAEITVDHFVAGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GFQGV+KR G ATHG + SHR G +V+ G
Sbjct: 109 DVTGTTIGKGFQGVIKRHHMGGGRATHGNSVSHRTHGSTGQRQDPGKVFKG 159
>gi|384916949|ref|ZP_10017088.1| 50S ribosomal protein L3 [Methylacidiphilum fumariolicum SolV]
gi|384525664|emb|CCG92961.1| 50S ribosomal protein L3 [Methylacidiphilum fumariolicum SolV]
Length = 216
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L VG E +K G +K SG+ P++ L F+ + PG L+ + F E +
Sbjct: 50 LQVGFEELAERKVSKPLLGHYKKSGISPRRFLKEFVFESEKQWQPGQTLSVSDFEEGEKV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQ 291
DV G+T +GFQGV+++ GF G PA+HG +K+HRR G I R +PG V +
Sbjct: 110 DVIGITKGKGFQGVIRKHGFAGQPASHG-SKTHRRNGAIGE-----RSFPGRVFK 158
>gi|407776105|ref|ZP_11123394.1| 50S ribosomal protein L3 [Thalassospira profundimaris WP0211]
gi|407280821|gb|EKF06388.1| 50S ribosomal protein L3 [Thalassospira profundimaris WP0211]
Length = 238
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+GLI + +G ++ +G T+++V D ++ R
Sbjct: 2 RSGLITQKVGMTRVFNDDGSHLPVTVLKVEDLQVV-------------ANRTNDTDGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G +K G F + V PK KL F ++ D ++ G L A HF +++
Sbjct: 49 VQLGYGKAKVKNVSKPMRGHFAKAKVEPKAKLAEFRVSEDGLIEVGAELAATHFVEGQYV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ A+HGV+ SHR G RV+ G
Sbjct: 109 DVIGTSIGKGFAGAMKRHNFGGLRASHGVSVSHRSHGSTGQCQDPGRVFKG 159
>gi|307946286|ref|ZP_07661621.1| 50S ribosomal protein L3 [Roseibium sp. TrichSKD4]
gi|307769950|gb|EFO29176.1| 50S ribosomal protein L3 [Roseibium sp. TrichSKD4]
Length = 240
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ G T++++ ++ +R E K
Sbjct: 2 RSGVIAQKVGMTRIYNDAGANVPVTVLRLEKCQVV-------------AHRTEEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L VG K G + + V PK+KL F ++ D M+ G +TA H+ +F+
Sbjct: 49 LQVGVGLAKVRNTPKAMRGHYAVAKVEPKRKLAEFRVSADNMIDVGAEITADHYVEGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + SHR G RV+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGGRASHGNSISHRSHGSTGQCQDPGRVFKG 159
>gi|451940812|ref|YP_007461450.1| 50S ribosomal protein L3 [Bartonella australis Aust/NH1]
gi|451900199|gb|AGF74662.1| 50S ribosomal protein L3 [Bartonella australis Aust/NH1]
Length = 246
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ ++ E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRIYNDAGEHVPVTVLRLEKCQVVAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
++ +L G F + V PK K+ F ++PD +L GT +TA HF P + +
Sbjct: 54 GFAKVKNTSRALR-----GHFARAEVEPKAKVAEFRVSPDNLLEIGTEITAEHFIPGQRV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTTIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKG 159
>gi|89070557|ref|ZP_01157846.1| 50S ribosomal protein L3 [Oceanicola granulosus HTCC2516]
gi|89043864|gb|EAR50062.1| 50S ribosomal protein L3 [Oceanicola granulosus HTCC2516]
Length = 292
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G ++ ++G++ T++Q+ ++ E G +LG
Sbjct: 3 RSGIIAKKVGMTRIFQEDGKQIPVTVLQLDKLQVVAKRTVE--------TDGYSAVQLGA 54
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ A+ + G F + V PK+K+ F + + ++ G +TA H+ +++
Sbjct: 55 GIAKAKRTSAPMR-----GHFAKANVEPKRKIAEFRVAAENLIEVGEEITADHYFEGQYV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ ATHGV+ SHR G +V+ G
Sbjct: 110 DVSGTSIGKGFAGAMKRHNFGGLRATHGVSISHRSHGSTGQCQDPGKVFKG 160
>gi|254294440|ref|YP_003060463.1| 50S ribosomal protein L3 [Hirschia baltica ATCC 49814]
gi|254042971|gb|ACT59766.1| ribosomal protein L3 [Hirschia baltica ATCC 49814]
Length = 243
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTGL+ K +G ++ ++G T++Q+ ++ E R Y
Sbjct: 2 RTGLLAKKLGMTRVFGEDGAHIPVTVLQLDGCQVVGQRTKE-----RDGYV--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +GA S TK G F + V PK L F + D ++ G +A HF P + +
Sbjct: 49 LQLGAGSRKAKNVTKPMRGQFAAAKVEPKAVLREFRVDEDMLVDVGAEFSAEHFVPGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D+ G +GF G MKRW F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DIAGTAKGKGFAGAMKRWNFGGLRASHGVSISHRALGSTGQCQDPGKVFKG 159
>gi|315605899|ref|ZP_07880930.1| 50S ribosomal protein L3 [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315312181|gb|EFU60267.1| 50S ribosomal protein L3 [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 221
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 13/168 (7%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
L+G+ IG +W +G T+VQV N + + E G +LG +
Sbjct: 15 LLGRKIGMTQVWDADGHLVPLTVVQVGTNVVTQVRTVE--------VDGYSAIQLGFGEI 66
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
D TK G F+ +GV P++ L + G L A F + +DV
Sbjct: 67 -----DSRKVTKPLLGHFEKAGVAPRRHLAEVRTSEHDSYELGQELDATAFEAGQSVDVS 121
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T +GF GVMKR GF G+ A+HG ++HR+ G I + A R++ G
Sbjct: 122 GTTKGKGFAGVMKRHGFAGVSASHGAHRNHRKPGSIGACATPGRIFKG 169
>gi|163840906|ref|YP_001625311.1| 50S ribosomal protein L3 [Renibacterium salmoninarum ATCC 33209]
gi|189029475|sp|A9WSV9.1|RL3_RENSM RecName: Full=50S ribosomal protein L3
gi|162954382|gb|ABY23897.1| LSU ribosomal protein L3P [Renibacterium salmoninarum ATCC 33209]
Length = 220
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
G++G +G +W +N + T+VQ D++++ + R K +
Sbjct: 9 GILGTKLGMTQVWDENNKLVPVTVVQA-DSNVVTQL------------RDAAKDGYTAVQ 55
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+G DP TK G F+ +GV P++ + G L+ F + +DV
Sbjct: 56 IGYGQIDPRKVTKPLAGHFEKAGVTPRRHVVELRTNDSDAYSLGQELSVEIFEAGQKVDV 115
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +GF GVMKR GF G+ A+HG K+HR+ G I + +RV+ G
Sbjct: 116 VGTSKGKGFAGVMKRHGFHGVGASHGAHKNHRKPGSIGGASTPSRVFKG 164
>gi|359777765|ref|ZP_09281041.1| 50S ribosomal protein L3 [Arthrobacter globiformis NBRC 12137]
gi|359304911|dbj|GAB14870.1| 50S ribosomal protein L3 [Arthrobacter globiformis NBRC 12137]
Length = 216
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
+T + GL+G +G +W +N + T+VQ D+++I + R
Sbjct: 1 MTATRNVKGLLGTKLGMTQVWDENNKLIPVTVVQA-DSNVITQL------------RNAE 47
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
+ +G DP TK G F+ +GV P++ + G L+ F
Sbjct: 48 TDGYVAVQIGYGQIDPRKVTKPLAGHFEKAGVTPRRHVVELRTADADSYELGQELSVELF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +DV G T +GF GVMKR GF G+ A+HG K+HR+ G I + +RV+ G
Sbjct: 108 EAGQKIDVVGTTKGKGFAGVMKRHGFHGVGASHGAHKNHRKPGSIGGASTPSRVFKG 164
>gi|296392585|ref|YP_003657469.1| 50S ribosomal protein L3 [Segniliparus rotundus DSM 44985]
gi|296179732|gb|ADG96638.1| 50S ribosomal protein L3 [Segniliparus rotundus DSM 44985]
Length = 221
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 80/179 (44%), Gaps = 13/179 (7%)
Query: 109 LEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRG 168
+ +TS R GL+G +G ++ + T+++ N + + PE
Sbjct: 1 MTSSTSKNRVGLLGAKLGMTQVFDERNRVVPVTVIRTGVNVVTQVRTPE----------- 49
Query: 169 EPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAA 228
+ K + + DP K G F+ +GV P++ L F + + G + A
Sbjct: 50 --RDKYSAIQLAFGHIDPRKVNKPLAGQFEKAGVTPRRHLAEFRLDDVSGYEVGQQIDAT 107
Query: 229 HFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F + +DV G + +GF G MKR GFKG A+HG K HRR G I + A RV+ G
Sbjct: 108 VFSAGDLVDVTGTSKGKGFAGTMKRHGFKGQGASHGAHKVHRRPGSIGACAFPGRVFKG 166
>gi|229818240|ref|ZP_04448522.1| hypothetical protein BIFANG_03538 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229784491|gb|EEP20605.1| hypothetical protein BIFANG_03538 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 216
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 78/177 (44%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
++ + R L+G+ +G +W +NG TLV V N ++ I EE
Sbjct: 1 MSQRADRKALLGRKLGMSQVWDENGFFVPVTLVDVSTN-VVTAIKTEETDG--------- 50
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
+ +G DP+ TK G F +GV P++ L G LTA F
Sbjct: 51 ---YTAVQIGYGQIDPTKVTKPLAGHFAKAGVTPRRHLVEVREDNATEYELGQELTAEVF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G T +GF G +KRWGFK THG K+ RR G + + A +R+ G
Sbjct: 108 EEGAEVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKG 164
>gi|405980232|ref|ZP_11038572.1| 50S ribosomal protein L3 [Actinomyces turicensis ACS-279-V-Col4]
gi|404390684|gb|EJZ85751.1| 50S ribosomal protein L3 [Actinomyces turicensis ACS-279-V-Col4]
Length = 222
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 13/168 (7%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
L+G+ +G +W +G T+VQV N I+ + EE + +
Sbjct: 16 LLGRKLGMTQVWDADGRLVPLTVVQVGTN-IVTQVRTEEVDG------------YSAVQI 62
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
G + TK G F +GV P++ L + G L A+ F + +DV
Sbjct: 63 GFGEIEARKVTKPLAGHFAKAGVEPRRHLTEVRTSAHDSYEVGQELDASTFEAGQAVDVS 122
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T +GF GVMKR GF G+ A+HG ++HR+ G I + A R++ G
Sbjct: 123 GNTKGKGFAGVMKRHGFAGVSASHGAHRNHRKPGSIGACATPGRIFKG 170
>gi|401416130|ref|XP_003872560.1| ribosomal protein L3-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488784|emb|CBZ24031.1| ribosomal protein L3-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 467
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 77/173 (44%), Gaps = 13/173 (7%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
S R GLIG + G + T DN I+K+ R G K +
Sbjct: 128 SVRFGLIGVKAFTCKDYDDLGNQFDCTAFWFPDNQIVKH-------STRNGDVGTDKVYV 180
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
G + V E P + +K +GVP K F ITPDA P GT L HF+P +
Sbjct: 181 GAMNVPVEFHKPHV-----AAFYKAAGVPVKHVSAGFPITPDAYAPVGTKLDVRHFKPGQ 235
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ + D G+QGVM R GF G G +K RR GC+ + G+ R+YPG
Sbjct: 236 EVTITFQNTDYGYQGVMFRHGFDGGYVWLGDSKWQRRPGCMGA-EGQKRIYPG 287
>gi|444316856|ref|XP_004179085.1| hypothetical protein TBLA_0B07480 [Tetrapisispora blattae CBS 6284]
gi|387512125|emb|CCH59566.1| hypothetical protein TBLA_0B07480 [Tetrapisispora blattae CBS 6284]
Length = 274
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 94/198 (47%), Gaps = 21/198 (10%)
Query: 98 NTPLKIEPLQPLEITTSSKRT------GLIGKIIGQYPLWMK-NGEKCRTTLVQVVDNHI 150
NTP I P +T + KR G++ + +G + K GE+ T++ ++DN
Sbjct: 30 NTPESIPPTITQSVTAAHKRKWLPNRCGVVAQKVGMKAYFNKETGERMPCTVL-LLDN-- 86
Query: 151 IKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCR 210
++ + K N VG S +P T++ G F + V PK+++
Sbjct: 87 VEVLLHRTIKEN----------GYTACQVGYGSKNPDKVTRQMLGHFASHNVNPKERVSE 136
Query: 211 FII-TPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSH 269
F + + +L GT + + F+ +F+D++ ++ +GF GVMKR FKG A+HG + +H
Sbjct: 137 FRVRSKSGLLKVGTNILPSFFKVGQFVDLKSVSKGKGFAGVMKRHNFKGQGASHGTSLTH 196
Query: 270 RRGGCIASGAGKARVYPG 287
R GG RV PG
Sbjct: 197 RHGGSYGQNQDPGRVLPG 214
>gi|289548391|ref|YP_003473379.1| 50S ribosomal protein L3 [Thermocrinis albus DSM 14484]
gi|289182008|gb|ADC89252.1| 50S ribosomal protein L3 [Thermocrinis albus DSM 14484]
Length = 234
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 15/170 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLIG +G +++K+G T++++ N+++ R + K +
Sbjct: 4 GLIGTKVGMTRVFLKDGTAVPVTVIKIEPNYVV-------------AVRRQEKDGYNAVQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAH-FRPREFLD 237
VGA TK G K +G+PP ++L F + G L F+P E +D
Sbjct: 51 VGAFPAKEKNLTKPELGHLKKAGLPPLRRLKEFRVDDPDQYQVGQELRVEQIFQPGELVD 110
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G++ RGF G MKRW F G P +HG + HR G I RV+ G
Sbjct: 111 VVGISKGRGFAGAMKRWDFGGFPKSHG-HRYHRAVGSIGQRTDPGRVWKG 159
>gi|357017153|gb|AET50605.1| hypothetical protein [Eimeria tenella]
Length = 283
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 14/159 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
G++ +G LW GE+ T+ Q I + I ++ + Y C+L
Sbjct: 26 GVLAYKVGMMSLWDSWGERHAVTVCQ-----IDRCIVLQQKTLSSHGYEA-------CVL 73
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
G P ++ F + GV PK F ++ D +LPPG L+A HF P ++ V
Sbjct: 74 -GLGYRSPLRTSRPNLCRFISLGVEPKAVTAEFKVSSDCLLPPGVELSAMHFVPGQWCFV 132
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGV-TKSHRRGGCIA 276
G + +GFQG +KRWGFKG A+HG +K+HR G I
Sbjct: 133 SGWSTAKGFQGPVKRWGFKGQNASHGTESKAHRSHGSIG 171
>gi|239787563|emb|CAX84031.1| 50S ribosomal protein L3 [uncultured bacterium]
Length = 213
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 78/169 (46%), Gaps = 13/169 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R GLIG+ +G ++ +G+ TLV+V I+ RGEP
Sbjct: 2 RAGLIGRKLGMSRIFTADGKSVAVTLVKVGPCPIVGV------------KRGEPD-GYEA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G E PS K G+F + VPP++ L F + + PG L F +
Sbjct: 49 VQLGYEDAKPSRVKKPERGVFAKANVPPQRILKEFRVDDASGYQPGESLGLNLFEVGGRV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
DV G +V +GF G MKRWGF+G A+HG +HR G I RV+
Sbjct: 109 DVTGRSVGKGFAGGMKRWGFRGGRASHGAHLTHRSPGSIGQCQTPGRVF 157
>gi|269219006|ref|ZP_06162860.1| 50S ribosomal protein L3 [Actinomyces sp. oral taxon 848 str.
F0332]
gi|269212117|gb|EEZ78457.1| 50S ribosomal protein L3 [Actinomyces sp. oral taxon 848 str.
F0332]
Length = 221
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 15/169 (8%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPE-EFKPNRKPYRGEPKRKLGCLL 178
L+G +G LW + G T+V+V N + + PE + + GE K K
Sbjct: 15 LLGTKLGMTQLWDEAGRVVPITVVRVGTNVVTQIRTPETDGYSAVQLASGELKTKN---- 70
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
TK G F +GV P++KL + A G LTA F + +DV
Sbjct: 71 ----------VTKPLQGHFDKAGVAPRRKLAEIRTSDAAEYELGQELTADLFEAGQKVDV 120
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +GF GVMKR GF G+ A+HG ++HR+ G I + A +RV+ G
Sbjct: 121 IGTSKGKGFAGVMKRHGFSGVSASHGAHRNHRKPGSIGACATPSRVFRG 169
>gi|443673935|ref|ZP_21138981.1| 50S ribosomal protein L3 [Rhodococcus sp. AW25M09]
gi|443413535|emb|CCQ17319.1| 50S ribosomal protein L3 [Rhodococcus sp. AW25M09]
Length = 221
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 78/170 (45%), Gaps = 13/170 (7%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
TG++G +G ++ +N T+++ N +I I +E R Y +
Sbjct: 10 TGILGTKLGMTQVFDENNRVVPVTVIKAGPN-VITQIRTQE----RDGYS--------AV 56
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
V + DP K G F+ +GV P++ + + + G LTAA F ++D
Sbjct: 57 QVAFGAIDPRKVNKPTSGQFEKAGVTPRRHIVEIRVADASQFEVGQELTAAVFEDGAYVD 116
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G + +GF G MKR GFKG A+HG HRR G I A RV+ G
Sbjct: 117 VTGTSKGKGFAGTMKRHGFKGQGASHGAQAVHRRPGSIGGCATPGRVFKG 166
>gi|319407426|emb|CBI81077.1| 50S ribosomal protein L3 [Bartonella sp. 1-1C]
Length = 254
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 13/175 (7%)
Query: 113 TSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKR 172
T+ R+G+I + +G ++ GE T++++ +I R K
Sbjct: 6 TAPMRSGVIAQKLGMTRIYNDAGEHVPVTVLRLDKCQVI-------------AQRTVEKN 52
Query: 173 KLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRP 232
+ +G +K G F + V PK K+ F ++PD +L GT +T HF P
Sbjct: 53 GYTAVQLGVGFAKIKNTSKALRGHFAKAVVEPKAKIAEFRVSPDNLLDVGTEITVEHFVP 112
Query: 233 REFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +DV G+++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 113 GQRVDVTGVSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKG 167
>gi|319404425|emb|CBI78028.1| 50S ribosomal protein L3 [Bartonella rochalimae ATCC BAA-1498]
Length = 254
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 13/175 (7%)
Query: 113 TSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKR 172
T+ R+G+I + +G ++ GE T++++ +I R K
Sbjct: 6 TAPMRSGVIAQKLGMTRIYNDAGEHVPVTVLRLDKCQVI-------------AQRTVKKN 52
Query: 173 KLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRP 232
+ +G +K G F + V PK K+ F ++PD +L GT +T HF P
Sbjct: 53 GYTAVQLGVGFAKIKNTSKALRGHFAKAVVEPKAKIAEFRVSPDNLLDVGTEITVEHFVP 112
Query: 233 REFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +DV G+++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 113 GQRVDVTGVSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKG 167
>gi|319405898|emb|CBI79530.1| 50S ribosomal protein L3 [Bartonella sp. AR 15-3]
Length = 246
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ ++ E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRIYNDAGEHVPVTVLRLDKCQVVAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L ++ +L G F + V PK K+ F ++PD +L GT +T HF P + +
Sbjct: 54 GLAKIKNTSQALR-----GHFAKAVVEPKAKIAEFRVSPDNLLGVGTEITVEHFVPGQRV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G+++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGISIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKG 159
>gi|453080381|gb|EMF08432.1| 60S ribosomal protein L9, mitochondrial precursor [Mycosphaerella
populorum SO2202]
Length = 306
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPP-GTPLTAAHFRPRE 234
+ VG + + T+ G F GVP KK+L F + + LP G+ ++A F+ +
Sbjct: 116 AVQVGFGTKEARNVTRPERGHFAAQGVPIKKELAEFRVKNEQGLPAVGSVISADLFQEGQ 175
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK-ARVYPG 287
F+D RG+T GF G MKRWGF G PA+HG + +HR G + G +RV PG
Sbjct: 176 FVDARGVTRGMGFAGGMKRWGFSGQPASHGTSLTHRAMGSAGASQGSGSRVLPG 229
>gi|329850207|ref|ZP_08265052.1| 50S ribosomal protein L3 [Asticcacaulis biprosthecum C19]
gi|328840522|gb|EGF90093.1| 50S ribosomal protein L3 [Asticcacaulis biprosthecum C19]
Length = 242
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 51/91 (56%)
Query: 197 FKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGF 256
F + V PK L F ++ + ++ G TA HF + +D++G+T+ +GF G MKRW F
Sbjct: 69 FAKAQVEPKAILTEFRVSEENLIDVGAEFTADHFVEGQRVDIQGVTIGKGFAGAMKRWNF 128
Query: 257 KGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G+ ATHGV+ SHR G R +PG
Sbjct: 129 GGLRATHGVSVSHRSHGSTGQRQDPGRTFPG 159
>gi|323354876|gb|EGA86709.1| Mrpl9p [Saccharomyces cerevisiae VL3]
Length = 148
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 194 CGLFKNSGVPPKKKLCRFIITPD-AMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMK 252
G F + V PK+ + F + + ++PPGT L + F+ +++DVR ++ +GF GVMK
Sbjct: 2 LGHFASKVVNPKEXVAEFRVKDEKGLIPPGTLLKPSFFKEGQYVDVRSVSKGKGFTGVMK 61
Query: 253 RWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
R+GFKG+ A+HG + HR GG RV PG
Sbjct: 62 RYGFKGLRASHGTSIMHRHGGSYGQNQDPGRVLPG 96
>gi|319408765|emb|CBI82422.1| 50S ribosomal protein L3 [Bartonella schoenbuchensis R1]
Length = 246
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + +I E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRIYNEAGEHVPVTVLRLENCQVIAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
++ ++ G F + V PK K+ F ++PD +L GT +T HF P + +
Sbjct: 54 GFAKVKN-----VSRALRGHFAKAVVEPKAKVAEFRVSPDNLLDVGTEITVEHFIPGQRV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKG 159
>gi|229821623|ref|YP_002883149.1| 50S ribosomal protein L3 [Beutenbergia cavernae DSM 12333]
gi|229567536|gb|ACQ81387.1| ribosomal protein L3 [Beutenbergia cavernae DSM 12333]
Length = 220
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 13/176 (7%)
Query: 112 TTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPK 171
T+++ T L+G +G +W G T+VQV N + PE G
Sbjct: 6 TSAAAVTALLGTKLGMTQVWDDAGRLVPVTVVQVGTNVVSAVRTPET--------DGYSA 57
Query: 172 RKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFR 231
+L + DP T+ G F +GV P++ + A PG LT F
Sbjct: 58 VQLAFGQI-----DPRKVTQPLKGHFAKAGVTPRRHVAEIRTGDAAEYTPGQELTVEVFA 112
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +DV G T +G GVMKR GF G+ A+HG ++HR+ G I + +RV+ G
Sbjct: 113 AGQGVDVVGTTKGKGTAGVMKRHGFSGVGASHGAHRNHRKAGSIGGASTPSRVFRG 168
>gi|365765477|gb|EHN06985.1| Mrpl9p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 148
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 194 CGLFKNSGVPPKKKLCRFIITPD-AMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMK 252
G F + V PK+ + F + + ++PPGT L + F+ +++DVR ++ +GF GVMK
Sbjct: 2 LGHFASKVVNPKEHVAEFRVKDEKGLIPPGTLLKPSFFKEGQYVDVRSVSKGKGFTGVMK 61
Query: 253 RWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
R+GFKG+ A+HG + HR GG RV PG
Sbjct: 62 RYGFKGLRASHGTSIMHRHGGSYGQNQDPGRVLPG 96
>gi|154340798|ref|XP_001566352.1| ribosomal protein L3-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063675|emb|CAM39860.1| ribosomal protein L3-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 467
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 78/173 (45%), Gaps = 13/173 (7%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
S R G++G + + G + T DN I+K+ R G K +
Sbjct: 128 SVRFGMVGVKVFTCKDYDDLGNQFDCTAFWFPDNQIVKH-------STRNGDVGTDKVYV 180
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
G + V E P + +K +GVP K F +TPDA P GT L HF+P +
Sbjct: 181 GAMNVPVEFHKPHV-----AAFYKAAGVPVKHVSAGFPVTPDAYAPVGTKLDVRHFKPGQ 235
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ + D G+QGVM R GF G G +K RR GC+ + G+ R+YPG
Sbjct: 236 EVTITFQNTDYGYQGVMFRHGFDGGYVWLGDSKWQRRPGCMGA-EGQKRIYPG 287
>gi|407410840|gb|EKF33139.1| ribosomal protein L3 mitochondrial, putative [Trypanosoma cruzi
marinkellei]
Length = 473
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 79/173 (45%), Gaps = 13/173 (7%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
S R G++G + + + G + T DN I+++ R G K +
Sbjct: 135 SVRFGMVGVKVFTCKDYDELGNQFDCTAFWFPDNQIVRH-------STRNGDVGTDKVYV 187
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
G + V E P + +K +GVP K F ITPDA P GT L HF+P +
Sbjct: 188 GAMNVPVEFHKPHV-----AAFYKAAGVPVKHVCAGFPITPDAYAPVGTKLDVRHFKPGQ 242
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ + D GF+GVM R GF G G +K RR GC+ + G+ R+YPG
Sbjct: 243 EVTITFQNTDYGFRGVMFRHGFDGGYVWLGDSKWQRRPGCMGT-EGQKRIYPG 294
>gi|357384713|ref|YP_004899437.1| 50S ribosomal protein L3 [Pelagibacterium halotolerans B2]
gi|351593350|gb|AEQ51687.1| LSU ribosomal protein L3p (L3e) [Pelagibacterium halotolerans B2]
Length = 231
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+GLI + +G ++ +G T++ + ++ R + K
Sbjct: 2 RSGLIAQKLGMTRIFTDDGAHVPVTVLALQGCQVV-------------GQRTQDKDGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +GA S +K G + + V PK+K+ F ++ D ++ G L A HF + +
Sbjct: 49 LQLGAGSVKVKNVSKAERGHYAAAKVEPKRKVVEFRVSEDNLIEVGAELQADHFIEGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGAMKRHNFGGLRASHGVSVSHRSHGSTGQNQDPGKVFKG 159
>gi|357443031|ref|XP_003591793.1| 50S ribosomal protein L3-2 [Medicago truncatula]
gi|355480841|gb|AES62044.1| 50S ribosomal protein L3-2 [Medicago truncatula]
Length = 174
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 48/66 (72%)
Query: 205 KKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHG 264
K+KL F +T DA+LP GT L HF P +++D+ G+T +GFQGVMK++GF G A+HG
Sbjct: 2 KRKLQEFRVTEDALLPVGTSLNVRHFVPGQYVDITGITKGKGFQGVMKKYGFHGGSASHG 61
Query: 265 VTKSHR 270
+K+HR
Sbjct: 62 NSKAHR 67
>gi|385304776|gb|EIF48781.1| 50s ribosomal protein l3 [Dekkera bruxellensis AWRI1499]
Length = 184
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRF-IITPDAMLPPGTPLTAAHFRPREFLD 237
+GA P TK G ++ + V PK + F + D ++PPGT + A F+ + +D
Sbjct: 1 MGAGFRKPENETKSMLGHYREAKVSPKAFVAEFEVKXKDGLIPPGTEIKADRFKVGQLVD 60
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V +GF G MKRWGF G ATHGV+ SHR G ARV+PG
Sbjct: 61 VISHCKGKGFAGGMKRWGFHGGRATHGVSLSHRTIGSTGQNTDPARVFPG 110
>gi|395784123|ref|ZP_10463962.1| 50S ribosomal protein L3 [Bartonella melophagi K-2C]
gi|395423878|gb|EJF90066.1| 50S ribosomal protein L3 [Bartonella melophagi K-2C]
Length = 246
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + +I R K
Sbjct: 2 RSGVIAQKLGMTRIYNEAGEHVPVTVLRLENCQVI-------------AQRTVEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G ++ G F + V PK K+ F ++PD +L GT +T HF P + +
Sbjct: 49 VQLGVGFAKVKNISRALRGHFAKAMVEPKAKVVEFRVSPDNLLDVGTEITVEHFIPGQRV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G A+HG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGVMKRHNFGGHRASHGNSITHRAHGSTGQCQDPGKVFKG 159
>gi|336179782|ref|YP_004585157.1| 50S ribosomal protein L3 [Frankia symbiont of Datisca glomerata]
gi|334860762|gb|AEH11236.1| 50S ribosomal protein L3 [Frankia symbiont of Datisca glomerata]
Length = 244
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 72/169 (42%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G +G +W N T+++ N + + R + +
Sbjct: 8 GLLGTKLGMTQVWDANNRVIPVTVIKAGPNVVTQV-------------RTSDRDGYSAVQ 54
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+G DP T+ G F +GVPP++ L PG LT F +DV
Sbjct: 55 LGYGEIDPRRVTQPLRGHFARAGVPPRRHLVELRTADATNYRPGQELTGEIFSAGSIVDV 114
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +GF GVMKR GFKG+ A HGV + HR G + A RV+ G
Sbjct: 115 TGTSKGKGFAGVMKRHGFKGLGAGHGVERKHRSPGSVGGCATPGRVFKG 163
>gi|326773963|ref|ZP_08233245.1| 50S ribosomal protein L3 [Actinomyces viscosus C505]
gi|343521886|ref|ZP_08758852.1| 50S ribosomal protein L3 [Actinomyces sp. oral taxon 175 str.
F0384]
gi|326636102|gb|EGE37006.1| 50S ribosomal protein L3 [Actinomyces viscosus C505]
gi|343401295|gb|EGV13801.1| 50S ribosomal protein L3 [Actinomyces sp. oral taxon 175 str.
F0384]
Length = 222
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 17/170 (10%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGCL 177
L+G +G +W +NG T+V+V N + ++ I + ++ + + G +
Sbjct: 16 LLGTKLGMTQIWDENGVLRPVTVVRVDTNVVTQVRTIETDGYEAVQLAF--------GDI 67
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
D S TK G F +GV P++ + + + PG L A F + +D
Sbjct: 68 -------DASKVTKPLAGHFAKAGVEPRRHVAEIRTSLASEFTPGQELAADTFEVGQLVD 120
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G + +GF GVMKR GF G+ A+HG ++HR+ G I + A R++ G
Sbjct: 121 VTGTSKGKGFAGVMKRHGFAGVGASHGAHRNHRKPGSIGACATPGRIFKG 170
>gi|400975466|ref|ZP_10802697.1| 50S ribosomal protein L3 [Salinibacterium sp. PAMC 21357]
Length = 216
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 90/182 (49%), Gaps = 21/182 (11%)
Query: 109 LEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPY 166
+ IT ++K GL+GK +G +W +N + T+V++ N + ++ + + + + Y
Sbjct: 1 MSITKTTK--GLLGKKLGMTQVWDENNKLVPVTVVEITPNVVTQLRSLEVDGYSAVQIAY 58
Query: 167 RGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAM-LPPGTPL 225
G + DP K G F +GV P++ + I TPDA G L
Sbjct: 59 --------GQI-------DPRKVNKPLTGHFDKAGVTPRRHITE-IRTPDAAEYTVGQEL 102
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
F P +DV G + +GF GVMKR FKG+ A+HG ++HR+ G I + + +RV+
Sbjct: 103 AVDIFTPGSKVDVVGTSKGKGFAGVMKRHNFKGVSASHGSHRNHRKPGSIGASSTPSRVF 162
Query: 286 PG 287
G
Sbjct: 163 KG 164
>gi|358365913|dbj|GAA82534.1| 50S ribosomal protein L3 [Aspergillus kawachii IFO 4308]
Length = 305
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPRE 234
+ +GA PS TK G F +G+ PK+ + F + ++ +LP G ++A F+ +
Sbjct: 127 AVQLGAGWRRPSNLTKSLLGHFTANGISPKRHVYEFRVKDESGLLPVGQAVSADWFQEGQ 186
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIA-SGAGKARVYPG 287
F+D R T +GF GVMKR GF G +HGV+ +HR G S G +RVYPG
Sbjct: 187 FVDARSNTKGKGFAGVMKRHGFGGQDRSHGVSLTHRSLGSAGPSQGGGSRVYPG 240
>gi|158317791|ref|YP_001510299.1| 50S ribosomal protein L3 [Frankia sp. EAN1pec]
gi|226725178|sp|A8LC56.1|RL3_FRASN RecName: Full=50S ribosomal protein L3
gi|158113196|gb|ABW15393.1| ribosomal protein L3 [Frankia sp. EAN1pec]
Length = 236
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 73/169 (43%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G +G +W N T++Q N + + P+ G +LG
Sbjct: 8 GLLGTKLGMTQVWDANNRVVPVTVIQAGPNVVTQVKTPDS--------DGYSAVQLGYGE 59
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+ DP K G F+ SG P++ L PG LT F + +DV
Sbjct: 60 I-----DPRRINKPMRGHFETSGATPRRHLVELRTADAGNYRPGQQLTGEVFDAGQVVDV 114
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +GF GVMKR GFKG+ A HGV + HR G + A RV+ G
Sbjct: 115 TGTSKGKGFAGVMKRHGFKGLGAGHGVERKHRSPGSVGGCATPGRVFKG 163
>gi|387907157|ref|YP_006337493.1| 50S ribosomal protein L3 [Blattabacterium sp. (Blaberus giganteus)]
gi|387582050|gb|AFJ90828.1| 50S ribosomal protein L3 [Blattabacterium sp. (Blaberus giganteus)]
Length = 210
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 14/171 (8%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
+GLIGK +G +++KNGE T+V+V +I++ E G +LG
Sbjct: 2 SGLIGKNMGMTSIFLKNGENVPCTIVKVGPCYIVQIKTVEN--------DGYSSIQLGID 53
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
+ + SL+ FK G+ PKKKL F I + G+ + F+ E +
Sbjct: 54 DKKIKKTNRSLFYH-----FKKVGLTPKKKLLEFRINQGSNFVLGSSININFFKENELVH 108
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPA-THGVTKSHRRGGCIASGAGKARVYPG 287
V+G++ +GFQGV+KR F G+ THG R G I +G+ +RV+ G
Sbjct: 109 VKGISKGKGFQGVVKRHNFSGVGERTHGQHNRLRAPGSIGAGSDPSRVFKG 159
>gi|365827618|ref|ZP_09369469.1| 50S ribosomal protein L3 [Actinomyces sp. oral taxon 849 str.
F0330]
gi|365264887|gb|EHM94673.1| 50S ribosomal protein L3 [Actinomyces sp. oral taxon 849 str.
F0330]
Length = 222
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 17/170 (10%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGCL 177
L+G +G +W +NG T+V+V N + ++ I + ++ + + RK+
Sbjct: 16 LLGTKLGMTQIWDENGVLRPVTVVRVDTNVVTQVRTIETDGYEAVQLAFGDIDARKV--- 72
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
TK G F +GV P++ + + + PG L A F + +D
Sbjct: 73 ------------TKPLAGHFAKAGVAPRRHVAEVRTSLASEFTPGQELAADTFEVGQLVD 120
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G + +GF GVMKR GF G+ A+HG ++HR+ G I + A R++ G
Sbjct: 121 VTGTSKGKGFAGVMKRHGFAGVGASHGAHRNHRKPGSIGACATPGRIFKG 170
>gi|269955435|ref|YP_003325224.1| 50S ribosomal protein L3 [Xylanimonas cellulosilytica DSM 15894]
gi|269304116|gb|ACZ29666.1| ribosomal protein L3 [Xylanimonas cellulosilytica DSM 15894]
Length = 217
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 13/170 (7%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
T ++GK +G LW + G T+V VD +++ + E G +L
Sbjct: 9 TAVLGKKLGMTQLWDEAGRLVPVTVV-AVDTNVVTQVRTTETD-------GYSAVQLAVG 60
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
+ DP T+ G F+ +GV P++ + + G +TAA F +D
Sbjct: 61 QI-----DPRKVTQPLKGHFEKAGVTPRRHVAEIRTADASTYTVGQEITAAAFEAGAVVD 115
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G T +G GVMKR GF G+ A+HG ++HR+ G I + +RV+ G
Sbjct: 116 VSGTTKGKGTAGVMKRHGFAGVGASHGSHRNHRKPGSIGGASTPSRVFKG 165
>gi|238492064|ref|XP_002377269.1| mitochondrial 54S ribosomal protein YmL9 [Aspergillus flavus
NRRL3357]
gi|220697682|gb|EED54023.1| 50S ribosomal protein L3 [Aspergillus flavus NRRL3357]
Length = 296
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 91/194 (46%), Gaps = 22/194 (11%)
Query: 101 LKIEPLQPLE--ITTSSKRTGLIGKIIGQYPLW-MKNGEKCRTTLVQVVDNHIIKYIPPE 157
LK P LE T RTG I G L+ + G++ T++Q+ +I +
Sbjct: 54 LKSTPTAALERKANTLPPRTGAIAIKKGMTALYDTETGKRIACTVLQLDRVEVISH---- 109
Query: 158 EFKPNRKPYRGEPKRKLGCLLVGAESG--DPSLYTKEYCGLFKNSGVPPKKKLCRFII-T 214
+ +++ G V SG P+ TK G F +G+ PK+ + F +
Sbjct: 110 -----------KTRQQHGYFAVQVGSGWKHPNNLTKSLLGHFSVNGISPKRHIFEFRVRD 158
Query: 215 PDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
+ +LP G + A F+ +++D R T +GF GVMKR GF G +HGV+ +HR G
Sbjct: 159 ENGLLPVGQAINADWFQEGQYVDARSNTKGKGFAGVMKRHGFGGQDRSHGVSLTHRSLGS 218
Query: 275 IA-SGAGKARVYPG 287
S G +RVYPG
Sbjct: 219 AGPSQGGGSRVYPG 232
>gi|190346390|gb|EDK38465.2| hypothetical protein PGUG_02563 [Meyerozyma guilliermondii ATCC
6260]
Length = 279
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 99/201 (49%), Gaps = 19/201 (9%)
Query: 88 PAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVD 147
P++K+ + T L++ L+ + R GL+G G + ++G + T+++V
Sbjct: 32 PSMKTKVPTKQHSLELSNLRKQLL----DRPGLLGIKRGMITWYTEDGNQFAATVLEVDS 87
Query: 148 NHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKK 207
++ E ++VG+ + +L T + L + +GV PK+
Sbjct: 88 CEVMANKTKET-------------DGYTAVMVGSGTKLKNL-TPDQLRLAQQAGVSPKRS 133
Query: 208 LCRFIITPDA-MLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVT 266
+ F + ++ ++P GT L A +F + +DV G++ +GF GV+KR GF G+ A+HGV+
Sbjct: 134 IREFRVRDESGLIPVGTELRADYFAVGQLVDVSGVSKGKGFAGVIKRHGFAGLQASHGVS 193
Query: 267 KSHRRGGCIASGAGKARVYPG 287
K+HR G + RV PG
Sbjct: 194 KAHRSAGSTGATQDPGRVLPG 214
>gi|325068030|ref|ZP_08126703.1| 50S ribosomal protein L3 [Actinomyces oris K20]
Length = 222
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 17/170 (10%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGCL 177
L+G +G +W +NG T+V+V N + ++ I + ++ + + RK+
Sbjct: 16 LLGTKLGMTQIWDENGVLRPVTVVRVDTNVVTQVRTIETDGYEAVQLAFGDIDARKV--- 72
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
TK G F +GV P++ + + + PG L A F + +D
Sbjct: 73 ------------TKPLAGHFAKAGVEPRRHVAEIRTSLASEFTPGQELAADTFEVGQLVD 120
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G + +GF GVMKR GF G+ A+HG ++HR+ G I + A R++ G
Sbjct: 121 VTGTSKGKGFAGVMKRHGFAGVGASHGAHRNHRKPGSIGACATPGRIFKG 170
>gi|398018513|ref|XP_003862421.1| ribosomal protein L3-like protein [Leishmania donovani]
gi|322500651|emb|CBZ35728.1| ribosomal protein L3-like protein [Leishmania donovani]
Length = 467
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 78/173 (45%), Gaps = 13/173 (7%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
S R G+IG + + G + T DN I+K+ R G K +
Sbjct: 128 SVRFGMIGVKAFTCKDYDELGNQFDCTAFWFPDNQIVKH-------STRNGDVGTDKVYV 180
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
G + V E P + +K +GVP K F +TPDA P GT L HF+P +
Sbjct: 181 GAMNVPVEFHKPHV-----AAFYKAAGVPVKHVSAGFPVTPDAYAPVGTKLDVRHFKPGQ 235
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ + D G+QGVM R GF G G +K RR GC+ + G+ R+YPG
Sbjct: 236 EVTITFQNTDYGYQGVMFRHGFDGGYVWLGDSKWQRRPGCMGA-EGQKRIYPG 287
>gi|169774031|ref|XP_001821484.1| mitochondrial 54S ribosomal protein YmL9 [Aspergillus oryzae RIB40]
gi|83769345|dbj|BAE59482.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 296
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 91/194 (46%), Gaps = 22/194 (11%)
Query: 101 LKIEPLQPLE--ITTSSKRTGLIGKIIGQYPLW-MKNGEKCRTTLVQVVDNHIIKYIPPE 157
LK P LE T RTG I G L+ + G++ T++Q+ +I +
Sbjct: 54 LKSTPTAALERKANTLPPRTGAIAIKKGMTALYDTETGKRIACTVLQLDRVEVISH---- 109
Query: 158 EFKPNRKPYRGEPKRKLGCLLVGAESG--DPSLYTKEYCGLFKNSGVPPKKKLCRFII-T 214
+ +++ G V SG P+ TK G F +G+ PK+ + F +
Sbjct: 110 -----------KTRQQHGYFAVQVGSGWKHPNNLTKSLLGHFSVNGISPKRHIFEFRVRD 158
Query: 215 PDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
+ +LP G + A F+ +++D R T +GF GVMKR GF G +HGV+ +HR G
Sbjct: 159 ENGLLPVGQAINADWFQEGQYVDARSNTKGKGFAGVMKRHGFGGQDRSHGVSLTHRSLGS 218
Query: 275 IA-SGAGKARVYPG 287
S G +RVYPG
Sbjct: 219 AGPSQGGGSRVYPG 232
>gi|121706456|ref|XP_001271490.1| mitochondrial 54S ribosomal protein YmL9 [Aspergillus clavatus NRRL
1]
gi|119399638|gb|EAW10064.1| 50S ribosomal protein L3 [Aspergillus clavatus NRRL 1]
Length = 297
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPRE 234
+ +GA PS TK G F GV PK+ + F I ++ ++P G + A+ F+ +
Sbjct: 120 AVQLGAGWKHPSNVTKSLLGHFSTHGVSPKRHIYEFRIKDESGLVPVGEMINASWFQEGQ 179
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIA-SGAGKARVYPG 287
++D R + +GF GVMKR GF G +HGV+ +HR G S G +RVYPG
Sbjct: 180 YVDARSNSKGKGFAGVMKRHGFHGQDRSHGVSLTHRSLGSAGPSQGGGSRVYPG 233
>gi|359418366|ref|ZP_09210349.1| 50S ribosomal protein L3 [Gordonia araii NBRC 100433]
gi|358245708|dbj|GAB08418.1| 50S ribosomal protein L3 [Gordonia araii NBRC 100433]
Length = 219
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 77/177 (43%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
+T S GL+G +G ++ +N T+VQ N I + E R Y
Sbjct: 1 MTNQSSTKGLLGTKLGMTQVFDENNRVVPVTVVQAGPNVITQIRTAE-----RDGYT--- 52
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
+ V + DP TK G F +GV P++ + + + G LTA F
Sbjct: 53 -----AVQVAYGAIDPRKVTKPVAGQFSKAGVTPRRHVAEIRVADASEFEIGQELTAELF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G + +GF GVMKR GF G+ A+HG + HR G I A RV+ G
Sbjct: 108 ADGALVDVTGTSKGKGFAGVMKRHGFAGLGASHGAHRVHRAPGSIGGCATPGRVFKG 164
>gi|389593657|ref|XP_003722077.1| ribosomal protein L3-like protein [Leishmania major strain
Friedlin]
gi|321438575|emb|CBZ12334.1| ribosomal protein L3-like protein [Leishmania major strain
Friedlin]
Length = 467
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 77/173 (44%), Gaps = 13/173 (7%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
S R G+IG + G + T DN I+K+ R G K +
Sbjct: 128 SVRFGMIGVKAFTCKDYDDLGNQFDCTAFWFPDNQIVKH-------STRNGDVGTDKVYV 180
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
G + V E P + +K +GVP K F +TPDA P GT L HF+P +
Sbjct: 181 GAMNVPVEFHKPHV-----AAFYKAAGVPVKHVSAGFPVTPDAYAPVGTKLDVRHFKPGQ 235
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ + D G+QGVM R GF G G +K RR GC+ + G+ R+YPG
Sbjct: 236 EVTITFQNTDYGYQGVMFRHGFDGGYVWLGDSKWQRRPGCMGA-EGQKRIYPG 287
>gi|67528204|ref|XP_661912.1| hypothetical protein AN4308.2 [Aspergillus nidulans FGSC A4]
gi|40741279|gb|EAA60469.1| hypothetical protein AN4308.2 [Aspergillus nidulans FGSC A4]
gi|259482889|tpe|CBF77796.1| TPA: 50S ribosomal protein L3 (AFU_orthologue; AFUA_4G06000)
[Aspergillus nidulans FGSC A4]
Length = 296
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRF-IITPDAMLPPGTPLTAAHFRPRE 234
+ +GA P+ TK G F GV PK+ + F + D +LP G + A F +
Sbjct: 119 AVQMGAGWKHPNNVTKSLLGHFSEQGVSPKRHVYEFRVKDEDGLLPVGQLVNADWFHEGQ 178
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIA-SGAGKARVYPG 287
++D R T +GF GVMKR GF G +HGV+ +HR G S G +RVYPG
Sbjct: 179 YVDARSNTKGKGFAGVMKRHGFGGQDRSHGVSLTHRSLGSAGPSQGGGSRVYPG 232
>gi|146092753|ref|XP_001466509.1| ribosomal protein L3-like protein [Leishmania infantum JPCM5]
gi|134070872|emb|CAM69548.1| ribosomal protein L3-like protein [Leishmania infantum JPCM5]
Length = 467
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 77/173 (44%), Gaps = 13/173 (7%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
S R G+IG + G + T DN I+K+ R G K +
Sbjct: 128 SVRFGMIGVKAFTCKDYDDLGNQFDCTAFWFPDNQIVKH-------STRNGDVGTDKVYV 180
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
G + V E P + +K +GVP K F +TPDA P GT L HF+P +
Sbjct: 181 GAMNVPVEFHKPHV-----AAFYKAAGVPVKHVSAGFPVTPDAYAPVGTKLDVRHFKPGQ 235
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ + D G+QGVM R GF G G +K RR GC+ + G+ R+YPG
Sbjct: 236 EVTITFQNTDYGYQGVMFRHGFDGGYVWLGDSKWQRRPGCMGA-EGQKRIYPG 287
>gi|400294449|ref|ZP_10796234.1| 50S ribosomal protein L3 [Actinomyces naeslundii str. Howell 279]
gi|399900452|gb|EJN83422.1| 50S ribosomal protein L3 [Actinomyces naeslundii str. Howell 279]
Length = 222
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 17/170 (10%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGCL 177
L+G +G +W +NG T+V+V N + ++ I + ++ + + RK+
Sbjct: 16 LLGTKLGMTQIWDENGVLRPVTVVRVDTNVVTQVRTIETDGYEAVQLAFGDIDTRKV--- 72
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
TK G F +GV P++ + + + PG L A F + +D
Sbjct: 73 ------------TKPLAGHFAKAGVEPRRHVAEVRTSLASEFTPGQELAADTFEVGQLVD 120
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G + +GF GVMKR GF G+ A+HG ++HR+ G I + A R++ G
Sbjct: 121 VTGTSKGKGFAGVMKRHGFAGVGASHGAHRNHRKPGSIGACATPGRIFKG 170
>gi|340776598|ref|ZP_08696541.1| 50S ribosomal protein L3 [Acetobacter aceti NBRC 14818]
Length = 216
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 50/85 (58%)
Query: 190 TKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQG 249
TK G + V PKK + F + DA+L PGT + A+HF + +DV G + +GF G
Sbjct: 51 TKPNRGHYARVKVEPKKAVREFRVAADAVLEPGTRILASHFVVGQKVDVTGTSKGKGFAG 110
Query: 250 VMKRWGFKGMPATHGVTKSHRRGGC 274
MKRW F G+ A+HGV+ SHR G
Sbjct: 111 AMKRWNFAGLEASHGVSISHRSHGS 135
>gi|7674308|sp|Q9ZI50.1|RL3_AQUPY RecName: Full=50S ribosomal protein L3
gi|4165865|gb|AAD08785.1| ribosomal protein L3 [Aquifex pyrophilus]
Length = 244
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLIG+ +G + +K+G T+++ N++++ K L
Sbjct: 4 GLIGEKVGMTRVLLKDGTAIPVTVIKFPVNYVVQVKSVNT------------KDGYNALQ 51
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAH-FRPREFLD 237
VGA TK G FK GVP ++L F + G L F+P + +D
Sbjct: 52 VGAYEAKEKHLTKPLIGHFKKHGVPLLRRLWEFRVDNPEEFKSGQELRVQDVFKPGDLVD 111
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G++ RGF GVMKRW F G P +HG + HR G I RV+ G
Sbjct: 112 VWGISKGRGFAGVMKRWDFAGFPRSHG-HRYHRAVGAIGQRTDPGRVWKG 160
>gi|385652286|ref|ZP_10046839.1| 50S ribosomal protein L3 [Leucobacter chromiiresistens JG 31]
Length = 217
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 14/170 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G +G +W +NG T+++V N ++ I E +
Sbjct: 9 GLLGTKLGMTQVWDENGNVVPVTVIEVAPN-VVTQIRTAEVD------------GYSAVQ 55
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTA-AHFRPREFLD 237
+ A DP K G F+ +GV P++ L + + G LT F + +D
Sbjct: 56 IAAGQIDPRKVNKPTAGHFEKAGVTPRRHLTEVRTSDASEYSLGQELTVDGTFEAGQLID 115
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G + +GF G MKR FKG+ A+HG ++HR+ G I A RV+ G
Sbjct: 116 VVGTSKGKGFAGAMKRHNFKGVSASHGAHRNHRKPGSIGGAATPGRVFRG 165
>gi|315655881|ref|ZP_07908779.1| 50S ribosomal protein L3 [Mobiluncus curtisii ATCC 51333]
gi|315656193|ref|ZP_07909084.1| 50S ribosomal protein L3 [Mobiluncus curtisii subsp. holmesii ATCC
35242]
gi|315489945|gb|EFU79572.1| 50S ribosomal protein L3 [Mobiluncus curtisii ATCC 51333]
gi|315493195|gb|EFU82795.1| 50S ribosomal protein L3 [Mobiluncus curtisii subsp. holmesii ATCC
35242]
Length = 218
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 13/168 (7%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
L+G+ +G +W ++G+ T+VQV N ++ I E G K
Sbjct: 12 LLGRKLGMTQVWDEDGKLIPVTVVQVEKN-VVTQIRTNETDGYDAVQLGFGKM------- 63
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
D TK G F +GV P++ L + G L A F +DV
Sbjct: 64 -----DERKVTKPMAGHFAKAGVEPRRHLAEIRTGDASSYELGQELGAEVFEAGTLVDVS 118
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T +GF GVMKR GF+G+ A+HG ++HR+ G I + A RV+ G
Sbjct: 119 GNTKGKGFAGVMKRHGFQGVSASHGAHRNHRKPGSIGACATPGRVFKG 166
>gi|298345472|ref|YP_003718159.1| 50S ribosomal protein L3 [Mobiluncus curtisii ATCC 43063]
gi|304391028|ref|ZP_07372980.1| 50S ribosomal protein L3 [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|298235533|gb|ADI66665.1| 50S ribosomal protein L3 [Mobiluncus curtisii ATCC 43063]
gi|304325911|gb|EFL93157.1| 50S ribosomal protein L3 [Mobiluncus curtisii subsp. curtisii ATCC
35241]
Length = 217
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 13/168 (7%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
L+G+ +G +W ++G+ T+VQV N ++ I E G K
Sbjct: 11 LLGRKLGMTQVWDEDGKLIPVTVVQVEKN-VVTQIRTNETDGYDAVQLGFGKM------- 62
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
D TK G F +GV P++ L + G L A F +DV
Sbjct: 63 -----DERKVTKPMAGHFAKAGVEPRRHLAEIRTGDASSYELGQELGAEVFEAGTLVDVS 117
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T +GF GVMKR GF+G+ A+HG ++HR+ G I + A RV+ G
Sbjct: 118 GNTKGKGFAGVMKRHGFQGVSASHGAHRNHRKPGSIGACATPGRVFKG 165
>gi|329945684|ref|ZP_08293414.1| 50S ribosomal protein L3 [Actinomyces sp. oral taxon 170 str.
F0386]
gi|328528492|gb|EGF55466.1| 50S ribosomal protein L3 [Actinomyces sp. oral taxon 170 str.
F0386]
Length = 222
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 17/170 (10%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGCL 177
L+G +G +W +NG T+V+V N + ++ I + ++ + + RK+
Sbjct: 16 LLGTKLGMTQIWDENGVLRPVTVVRVDTNVVTQVRTIETDGYEAVQLAFGDINARKV--- 72
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
TK G F +GV P++ + + + PG L A F + +D
Sbjct: 73 ------------TKPLAGHFAKAGVEPRRHVAEVRTSLASEFTPGQELAADTFEVGQLVD 120
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G + +GF GVMKR GF G+ A+HG ++HR+ G I + A R++ G
Sbjct: 121 VTGTSKGKGFAGVMKRHGFAGVGASHGAHRNHRKPGSIGACATPGRIFKG 170
>gi|403738729|ref|ZP_10951330.1| 50S ribosomal protein L3 [Austwickia chelonae NBRC 105200]
gi|403191379|dbj|GAB78100.1| 50S ribosomal protein L3 [Austwickia chelonae NBRC 105200]
Length = 218
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 15/179 (8%)
Query: 111 ITTSSKRT--GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRG 168
+T +++RT G++G+ +G +W T+++ + + PE
Sbjct: 1 MTNAAERTVTGVLGEKLGMTQVWDAENRLVPVTVIKAGPCVVTQVRTPE----------- 49
Query: 169 EPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAA 228
G + +G + DP K G F +GV P++ L + PG LT
Sbjct: 50 --TDGYGAVQLGFGAIDPRKVNKPETGHFTKAGVTPRRYLVEIRTANASEYTPGQELTVE 107
Query: 229 HFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F +DV G T +GF GVMKR GF G+ A+HG ++HR+ G I + A ARV+ G
Sbjct: 108 AFEAGAKVDVSGTTKGKGFAGVMKRHGFAGVSASHGAHRNHRKPGSIGACATPARVFKG 166
>gi|146417733|ref|XP_001484834.1| hypothetical protein PGUG_02563 [Meyerozyma guilliermondii ATCC
6260]
Length = 279
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 190 TKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPREFLDVRGLTVDRGFQ 248
T + L + +GV PK+ + F + ++ ++P GT L A +F + +DV G++ +GF
Sbjct: 116 TPDQLRLAQQAGVSPKRSIREFRVRDESGLIPVGTELRADYFAVGQLVDVSGVSKGKGFA 175
Query: 249 GVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GV+KR GF G+ A+HGV+K+HR G + RV PG
Sbjct: 176 GVIKRHGFAGLQASHGVSKAHRSAGSTGATQDPGRVLPG 214
>gi|389878489|ref|YP_006372054.1| 50S ribosomal protein L3 [Tistrella mobilis KA081020-065]
gi|388529273|gb|AFK54470.1| ribosomal protein L3 [Tistrella mobilis KA081020-065]
Length = 225
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 53/98 (54%)
Query: 190 TKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQG 249
+K G F + V PK KL F +T DA+ G + A HF +F+DV G ++ +GF G
Sbjct: 51 SKAQRGHFAKAKVEPKAKLAEFRVTADALPEIGAEIGANHFVVGQFVDVVGTSIGKGFAG 110
Query: 250 VMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
MKR F G+ ATHGV+ SHR G + R + G
Sbjct: 111 AMKRHNFGGLRATHGVSVSHRSHGSTGNRQDPGRTFKG 148
>gi|381398001|ref|ZP_09923409.1| 50S ribosomal protein L3 [Microbacterium laevaniformans OR221]
gi|380774667|gb|EIC07963.1| 50S ribosomal protein L3 [Microbacterium laevaniformans OR221]
Length = 219
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 14/170 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G +G +W +NG+ T+++V N + + PE R Y +
Sbjct: 11 GLLGTKLGMTQVWDENGKLVPVTVIEVAPNVVTQVRTPE-----RDGYN--------AVQ 57
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTA-AHFRPREFLD 237
+ DP K F+ +GV P++ L A G LT A F + +D
Sbjct: 58 IAYGQIDPRKVNKPQTAHFEAAGVTPRRHLTEVRTADAADYSLGQELTVDATFEAGQLVD 117
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G + +G GVMKR FKG+ A+HG ++HR+ G I + + +RV+ G
Sbjct: 118 VVGTSKGKGTAGVMKRHNFKGVSASHGAHRNHRKPGSIGASSTPSRVFKG 167
>gi|50955566|ref|YP_062854.1| 50S ribosomal protein L3 [Leifsonia xyli subsp. xyli str. CTCB07]
gi|81826588|sp|Q6ACZ5.1|RL3_LEIXX RecName: Full=50S ribosomal protein L3
gi|50952048|gb|AAT89749.1| 50S ribosomal protein L3 [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 219
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 19/180 (10%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEE--FKPNRKPYRG 168
I T + R GL+GK +G +W +N T++++ N + + PE + + Y
Sbjct: 4 IDTKTSR-GLLGKKLGMTQVWDENDTLIPVTVIEITPNVVTQVRTPEADGYNAVQIAYGQ 62
Query: 169 EPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTA- 227
+RK+ K G F +GV P++ L A G LT
Sbjct: 63 IDRRKV---------------NKPSAGHFDKAGVTPRRHLTEVRTADAAEYSAGQELTVD 107
Query: 228 AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F + +DV G + +GF GVMKR F+G+ A+HG ++HR+ G I + + +RV+ G
Sbjct: 108 GTFEAGQLVDVVGTSKSKGFAGVMKRHNFQGVSASHGAHRNHRKPGSIGASSTPSRVFKG 167
>gi|406910922|gb|EKD50825.1| 50S ribosomal protein L3 [uncultured bacterium]
Length = 226
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 15/170 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNR-KPYRGEPKRKLGCL 177
G+IG+ +G ++ K G T+V++ N + E+ N + GE K
Sbjct: 3 GIIGEKLGMTQIYDKEGTVVPVTVVRIEPNTVSSVKTKEQHGYNAIQLAHGEQK------ 56
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
P TK GLFK + P++ L F A G +T + F + +D
Sbjct: 57 --------PQRMTKASVGLFKKHKLTPRRHLKEFATERSAEYQVGMSVTVSCFNAGDVVD 108
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
++G++ +GFQGVMK++ F G +HG + SHR+ G I RV PG
Sbjct: 109 IQGVSKGKGFQGVMKKYHFSGGTDSHGNSVSHRKPGSIGQNTYPGRVIPG 158
>gi|227497181|ref|ZP_03927429.1| ribosomal protein L3 [Actinomyces urogenitalis DSM 15434]
gi|226833312|gb|EEH65695.1| ribosomal protein L3 [Actinomyces urogenitalis DSM 15434]
Length = 222
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 17/170 (10%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGCL 177
L+G +G +W +NG T+V+V N + ++ I + ++ + + +RK+
Sbjct: 16 LLGTKLGMTQIWDENGVLRPVTVVRVDTNVVTQVRTIETDGYEAVQLAFGEIAERKV--- 72
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
TK G F +GV P++ + + + G LTA F + +D
Sbjct: 73 ------------TKPLAGHFAKAGVAPRRHVAEVRTSLASEFEAGQELTADLFEVGQKVD 120
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V+G + +GF GVMKR GF G+ A+HG ++HR+ G I + A R++ G
Sbjct: 121 VQGTSKGKGFAGVMKRHGFAGVSASHGAHRNHRKPGSIGACATPGRIFKG 170
>gi|145256427|ref|XP_001401384.1| mitochondrial 54S ribosomal protein YmL9 [Aspergillus niger CBS
513.88]
gi|134058285|emb|CAK38476.1| unnamed protein product [Aspergillus niger]
Length = 305
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPRE 234
+ +GA P TK G F +G+ PK+ + F + ++ +LP G ++A F+ +
Sbjct: 127 AVQLGAGWRRPDNLTKSLLGHFTANGISPKRHVYEFRVKDESGLLPVGQTVSADWFQEGQ 186
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIA-SGAGKARVYPG 287
F+D R T +GF GVMKR GF G +HGV+ +HR G S G +RVYPG
Sbjct: 187 FVDARSDTKGKGFAGVMKRHGFGGQDRSHGVSLTHRSLGSAGPSQGGGSRVYPG 240
>gi|453075556|ref|ZP_21978342.1| 50S ribosomal protein L3 [Rhodococcus triatomae BKS 15-14]
gi|452762982|gb|EME21269.1| 50S ribosomal protein L3 [Rhodococcus triatomae BKS 15-14]
Length = 218
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 78/175 (44%), Gaps = 13/175 (7%)
Query: 113 TSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKR 172
T +K TG++G +G ++ +N T+V+ N ++ I EE R Y
Sbjct: 2 TENKITGILGTKLGMTQVFDENNRVVPVTVVKAGPN-VVTQIRTEE----RDGYSAVQ-- 54
Query: 173 KLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRP 232
L GA DP K G F +GV P++ + + G LTAA F
Sbjct: 55 ----LAYGAI--DPRKVNKPTSGQFAKAGVTPRRHIVELRVADAGEYEVGQELTAAVFED 108
Query: 233 REFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
++DV G + +GF G MKR GF G A+HG HRR G I A RV+ G
Sbjct: 109 GAYVDVTGTSKGKGFAGTMKRHGFAGQGASHGAQAVHRRPGSIGGCATPGRVFKG 163
>gi|319760329|ref|YP_004124267.1| 50S ribosomal protein L3 [Candidatus Blochmannia vafer str. BVAF]
gi|318039043|gb|ADV33593.1| 50S ribosomal protein L3 [Candidatus Blochmannia vafer str. BVAF]
Length = 217
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 17/172 (9%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
GLIG+ +G L+ ++G T+V+V+ NH+I+ + ++ G
Sbjct: 2 NGLIGRKLGMTRLFGEDGVSIPVTMVEVLPNHVIQI---------------KNLKRDGYC 46
Query: 178 LVGAESGDPSL--YTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREF 235
V +G + K G K +GV P K L F + D+ + G +T F+ +
Sbjct: 47 AVQVTTGHSKVNCLNKPQLGHLKKAGVKPGKGLWEFRVNSDSTISLGDVITIEIFKNAKE 106
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G++ +GF G +KRW F A+HG + SHR G I +V+ G
Sbjct: 107 VDVTGISKGKGFSGTIKRWNFHTQDASHGNSLSHRAPGSIGQNQTPGKVFKG 158
>gi|254780261|ref|YP_003064674.1| 50S ribosomal protein L3 [Candidatus Liberibacter asiaticus str.
psy62]
gi|254039938|gb|ACT56734.1| 50S ribosomal protein L3 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 221
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 14/170 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G++ + +G ++ G + T++ + + ++ +R K
Sbjct: 2 RSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVV-------------VHRTLDKNGYMA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRF-IITPDAMLPPGTPLTAAHFRPREF 235
+ VGA +K G F + V PKKKL F + D +LP G+ + ++F +
Sbjct: 49 VQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQL 108
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
+DV G+T+ +GF G MKR F G+ ATHGV+ SHR G RV+
Sbjct: 109 VDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVF 158
>gi|350631966|gb|EHA20334.1| hypothetical protein ASPNIDRAFT_44347 [Aspergillus niger ATCC 1015]
Length = 305
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPRE 234
+ +GA P TK G F +G+ PK+ + F + ++ +LP G ++A F+ +
Sbjct: 127 AVQLGAGWRRPDNLTKSLLGHFTANGISPKRHVYEFRVKDESGLLPVGQTVSADWFQEGQ 186
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIA-SGAGKARVYPG 287
F+D R T +GF GVMKR GF G +HGV+ +HR G S G +RVYPG
Sbjct: 187 FVDARSNTKGKGFAGVMKRHGFGGQDRSHGVSLTHRSLGSAGPSQGGGSRVYPG 240
>gi|254516911|ref|ZP_05128969.1| ribosomal protein L3 [gamma proteobacterium NOR5-3]
gi|219674416|gb|EED30784.1| ribosomal protein L3 [gamma proteobacterium NOR5-3]
Length = 231
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 16/187 (8%)
Query: 103 IEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPN 162
IE P+ GL+G+ G ++ ++G T+V+V N + + K N
Sbjct: 8 IEGESPVHCEVGKMTIGLVGRKSGMTRVFTEDGASIPVTVVEVSPNRVT------QIKEN 61
Query: 163 RKP-YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITP-DAMLP 220
YR + V A S + +K GLF +GV + L F ++ D
Sbjct: 62 DSDGYR--------SIQVTAGSRKAAKVSKSEAGLFAKAGVEAGRGLWEFRLSAEDESFE 113
Query: 221 PGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAG 280
G LT F + +DV G + +GFQGV+KRW F ATHG + SHR G I
Sbjct: 114 VGAELTVERFEEGQKVDVAGKSKGKGFQGVIKRWNFSMQDATHGNSLSHRAPGSIGQCQT 173
Query: 281 KARVYPG 287
RV+ G
Sbjct: 174 PGRVFKG 180
>gi|84515208|ref|ZP_01002571.1| 50S ribosomal protein L3 [Loktanella vestfoldensis SKA53]
gi|84511367|gb|EAQ07821.1| 50S ribosomal protein L3 [Loktanella vestfoldensis SKA53]
Length = 272
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 60/112 (53%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREF 235
+ +GA + ++ G F + V PK+K+ F + P+ M+ G +TA H+ ++
Sbjct: 37 AVQLGAGAAKAKRTSQAMRGHFAAAKVEPKRKVAEFRVAPENMINVGETITANHYFEGQY 96
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G ++ +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 97 VDVSGTSIGKGFAGAMKRHNFGGLRASHGVSVSHRSHGSTGQCQDPGKVFKG 148
>gi|50285271|ref|XP_445064.1| mitochondrial 54S ribosomal protein YmL9 [Candida glabrata CBS 138]
gi|49524367|emb|CAG57964.1| unnamed protein product [Candida glabrata]
Length = 263
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 15/173 (8%)
Query: 117 RTGLIGKIIGQYPLW-MKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLG 175
R G + + +G P + K GE+ T++Q + ++ + R + +
Sbjct: 50 RCGAVTQKVGMMPYFDEKTGERIAATILQFNNVEVLMH------------RRLDEDGYVA 97
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRF-IITPDAMLPPGTPLTAAHFRPRE 234
C VG + +++ G F V PK+K+ F + + +LP GT + F +
Sbjct: 98 CQ-VGYGNRSVDKVSRQMLGHFATLNVNPKEKVTEFRVKNEEGLLPIGTHIKPDFFTEGQ 156
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+LDVR ++ +GF GVMKR FKG+ A+HG + HR GG RV PG
Sbjct: 157 YLDVRSVSKGKGFAGVMKRHNFKGLRASHGTSVMHRHGGSYGQNQDPGRVLPG 209
>gi|359427459|ref|ZP_09218525.1| 50S ribosomal protein L3 [Gordonia amarae NBRC 15530]
gi|358237277|dbj|GAB08107.1| 50S ribosomal protein L3 [Gordonia amarae NBRC 15530]
Length = 217
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 79/179 (44%), Gaps = 17/179 (9%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEE--FKPNRKPYRG 168
++ + G++G +G ++ +N T+VQ N I + E+ + + Y
Sbjct: 1 MSNQASTKGILGTKLGMTQVFDENNRVVPVTVVQAGPNVITQLRTAEQDGYTAVQLAY-- 58
Query: 169 EPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAA 228
G + DP TK G F +GV P++ L + A G LTA
Sbjct: 59 ------GAI-------DPRKVTKPVAGQFAKAGVTPRRHLAEIRVADVAEFSVGQELTAE 105
Query: 229 HFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F +DV G + +GF GVMKR GF G+ A+HGV + HR G I A RV+ G
Sbjct: 106 IFADGALVDVTGTSKGKGFAGVMKRHGFAGLGASHGVHRVHRAPGSIGGCATPGRVFKG 164
>gi|320531960|ref|ZP_08032861.1| 50S ribosomal protein L3 [Actinomyces sp. oral taxon 171 str.
F0337]
gi|320135827|gb|EFW27874.1| 50S ribosomal protein L3 [Actinomyces sp. oral taxon 171 str.
F0337]
Length = 222
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 17/170 (10%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGCL 177
L+G +G +W +NG T+V+V N + ++ I + ++ + + RK+
Sbjct: 16 LLGTKLGMTQIWDENGVLRPVTVVRVDTNVVTQVRTIETDGYEAVQLAFGDIDARKV--- 72
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
TK G F GV P++ + + + PG L A F + +D
Sbjct: 73 ------------TKPLAGHFAKVGVEPRRHVAEIRTSLASEFTPGQELAADTFEVGQLVD 120
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G + +GF GVMKR GF G+ A+HG ++HR+ G I + A R++ G
Sbjct: 121 VTGTSKGKGFAGVMKRHGFAGVGASHGAHRNHRKPGSIGACATPGRIFKG 170
>gi|254456207|ref|ZP_05069636.1| ribosomal protein L3 [Candidatus Pelagibacter sp. HTCC7211]
gi|207083209|gb|EDZ60635.1| ribosomal protein L3 [Candidatus Pelagibacter sp. HTCC7211]
Length = 236
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 13/168 (7%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
L+GK IG + K G+ T+++V +++ I E KR + +
Sbjct: 6 LMGKKIGMTREFYKTGQLVPVTVLKVEKARVVQVIDEE-------------KRGYKAVQL 52
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
G S TK G F K+KL + I G F+ +F+D R
Sbjct: 53 GYGKIKNSKLTKAMKGFFAKKNTEAKRKLKEYRIKDTEAYKEGNEFGLEIFKDIKFVDTR 112
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
T+ +GF G MKRW F G+ A+HGV+ SHR G +V+ G
Sbjct: 113 SKTIGKGFAGAMKRWNFGGLRASHGVSISHRAHGSTGHSQDPGKVFKG 160
>gi|254470259|ref|ZP_05083663.1| ribosomal protein L3 [Pseudovibrio sp. JE062]
gi|211960570|gb|EEA95766.1| ribosomal protein L3 [Pseudovibrio sp. JE062]
Length = 227
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 60/123 (48%)
Query: 165 PYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTP 224
+R K L +G + + G F + V PK+KL F ++ + M+ G
Sbjct: 26 AHRTAEKNGYTALQLGVGAAKVKNTNRAMRGHFAVAKVEPKRKLAEFRVSEENMIEVGAE 85
Query: 225 LTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARV 284
LTA HF +F+DV G ++ +GF G MKR F G A+HGV+ SHR G +V
Sbjct: 86 LTADHFLNGQFVDVTGTSIGKGFAGAMKRHNFGGGRASHGVSISHRAHGSTGQCQDPGKV 145
Query: 285 YPG 287
+ G
Sbjct: 146 FKG 148
>gi|86739295|ref|YP_479695.1| 50S ribosomal protein L3 [Frankia sp. CcI3]
gi|109893429|sp|Q2JFH6.1|RL3_FRASC RecName: Full=50S ribosomal protein L3
gi|86566157|gb|ABD09966.1| LSU ribosomal protein L3P [Frankia sp. CcI3]
Length = 235
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 72/169 (42%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G +G +W N T+++ N + + P+ G +LG
Sbjct: 8 GLLGTKLGMTQVWDANNRVVPVTVIKAGPNVVTQVKTPDS--------DGYSAVQLGYGE 59
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
V DP K G F SGV P++ L PG LT F +DV
Sbjct: 60 V-----DPRKINKPARGHFATSGVTPRRHLVELRTADAGNYRPGQELTGEVFSAGTVVDV 114
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +GF GVMKR GFKG+ A HGV + HR G + A RV+ G
Sbjct: 115 TGTSKGKGFAGVMKRHGFKGLGAGHGVERKHRSPGSVGGCATPGRVFKG 163
>gi|444915198|ref|ZP_21235334.1| LSU ribosomal protein L3p (L3e) [Cystobacter fuscus DSM 2262]
gi|444713780|gb|ELW54672.1| LSU ribosomal protein L3p (L3e) [Cystobacter fuscus DSM 2262]
Length = 225
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 75/171 (43%), Gaps = 16/171 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLIGK IG +W + G T++ V ++ PE K + +
Sbjct: 3 GLIGKKIGMTQVWNEEGNLVPVTVIDVNTCTVVGKRTPE-------------KDQYSAVT 49
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD--AMLPPGTPLTAAHFRPREFL 236
VG + K G FK + VP ++ L F ++ + A G + A F + +
Sbjct: 50 VGFGELRETSLNKPQLGFFKKANVPLRRHLKEFRVSAEEAAGFNVGDAVKADLFTKGQLV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKG-MPATHGVTKSHRRGGCIASGAGKARVYP 286
DV G+T RGFQGVMKRW FKG AT G + R G I RVYP
Sbjct: 110 DVTGITKGRGFQGVMKRWKFKGSQTATRGTHEYRRHPGAIGQRKTPGRVYP 160
>gi|407716972|ref|YP_006838252.1| 50S ribosomal protein L3 [Cycloclasticus sp. P1]
gi|407257308|gb|AFT67749.1| 50S ribosomal protein L3 [Cycloclasticus sp. P1]
Length = 212
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 17/171 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G+ G L+ + GE ++VQ++ N + + + + G
Sbjct: 4 GLVGRKCGMTRLFTEEGESIPVSVVQILPNRVTRVLNEQSD---------------GYSA 48
Query: 179 VGAESGD--PSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
V +GD S K G FK +GV + L F + D+ L G+ L+ F + +
Sbjct: 49 VQVTTGDVKNSRVNKAEAGQFKKAGVEAGRGLWEFRLEEDSDLEVGSDLSLDIFEAGQKI 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DVRG ++ +G+ GV+KR+ F+ ATHG + SHR G I RV G
Sbjct: 109 DVRGKSIGKGYAGVIKRYNFQMQDATHGNSLSHRAPGSIGQCQTPGRVLKG 159
>gi|407832293|gb|EKF98375.1| ribosomal protein L3 mitochondrial, putative [Trypanosoma cruzi]
Length = 532
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 78/173 (45%), Gaps = 13/173 (7%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
S R G++G + + G + T DN I+++ R G + +
Sbjct: 194 SVRFGMVGVKAFTCKDYDELGNQFDCTAFWFPDNQIVRH-------STRNGDVGTDRVYV 246
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
G + V E P + +K +GVP K F ITPDA P GT L HF+P +
Sbjct: 247 GAMNVPVEFHKPHV-----AAFYKAAGVPVKHVCAGFPITPDAYAPVGTKLDVRHFKPGQ 301
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ + D GF+GVM R GF G G +K RR GC+ + G+ R+YPG
Sbjct: 302 EVTITFQNTDYGFRGVMFRHGFDGGYVWLGDSKWQRRPGCMGT-EGQKRIYPG 353
>gi|15605616|ref|NP_212989.1| 50S ribosomal protein L3 [Aquifex aeolicus VF5]
gi|3914748|sp|O66431.1|RL3_AQUAE RecName: Full=50S ribosomal protein L3
gi|2982767|gb|AAC06393.1| ribosomal protein L03 [Aquifex aeolicus VF5]
Length = 241
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 14/170 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLIG+ +G + +K+G T+++ N++++ K L
Sbjct: 4 GLIGEKVGMTRVLLKDGTAIPVTVIKFPVNYVVQVKSQN------------TKDGYNALQ 51
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAH-FRPREFLD 237
+GA TK G FK GVP ++L F + G L F+P + +D
Sbjct: 52 IGAYEAKEKHLTKPLIGHFKKHGVPLLRRLWEFRVDNPEEFQSGQQLKVEDVFKPGDLVD 111
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G++ RGF G MKRW F G P +HG + HR G I RV+ G
Sbjct: 112 VWGISKGRGFAGAMKRWDFAGFPKSHG-HRYHRAVGAIGQRTDPGRVWKG 160
>gi|319783320|ref|YP_004142796.1| 50S ribosomal protein L3 [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317169208|gb|ADV12746.1| 50S ribosomal protein L3 [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 242
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G ++ GE T++ + + ++ E+ G +LG
Sbjct: 2 RSGVIAKKVGMTRIYNDAGEHVPVTVLLMENCQVVAQRTQEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L ++ +K G F + V PK K+ F ++ D M+ G +T HF + +
Sbjct: 54 GLAKVKN-----TSKAMRGHFATASVEPKAKVAEFRVSADNMIDVGAEITVEHFVAGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GFQGV+KR G ATHG + SHR G +V+ G
Sbjct: 109 DVTGTTIGKGFQGVIKRHHMGGGRATHGNSVSHRTHGSTGQRQDPGKVFKG 159
>gi|341614503|ref|ZP_08701372.1| 50S ribosomal protein L3 [Citromicrobium sp. JLT1363]
Length = 278
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 77/175 (44%), Gaps = 24/175 (13%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLV-----QVVDNHIIKYIPPEEFKPNRKPYRGEPK 171
RTG+I K +G L+ ++G T++ QV N R + +
Sbjct: 2 RTGVIAKKVGMTRLFQEDGRHVPVTVLALEGCQVTGN------------------RTQDR 43
Query: 172 RKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRF-IITPDAMLPPGTPLTAAHF 230
+ VG+ K F + V K K+ F + + +LP G +TA HF
Sbjct: 44 DGYWSVQVGSGEAKQKNVNKPQREAFAKAEVGLKMKVAEFRVENEEGLLPVGATITADHF 103
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
+ +DV G T +GF G MKRWGF G+ ATHGV+ SHR G + RV+
Sbjct: 104 IAGQKVDVSGYTQGKGFAGAMKRWGFGGLRATHGVSLSHRSHGSTGNRQDPGRVF 158
>gi|336116748|ref|YP_004571515.1| 50S ribosomal protein L3 [Microlunatus phosphovorus NM-1]
gi|334684527|dbj|BAK34112.1| 50S ribosomal protein L3 [Microlunatus phosphovorus NM-1]
Length = 219
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 78/177 (44%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
++ K GL+G +G LW +N T++Q + + PE G
Sbjct: 1 MSAEKKVKGLLGTKLGMTQLWDENNRVIPVTVIQAGPCVVTQVRTPES--------DGYS 52
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
+LG + A+ TK G F + V P+K L + + G LTA F
Sbjct: 53 AVQLGFGAIKAKQ-----VTKPTAGHFAKADVTPRKHLVELRTSDASEYALGQELTAEVF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
E +DV G++ +G GVMKR GF G+ ATHGV + HR G I A RV+ G
Sbjct: 108 EAAEVVDVTGVSKGKGTAGVMKRHGFGGLRATHGVHRKHRSPGSIGGCATPGRVFKG 164
>gi|309812372|ref|ZP_07706127.1| 50S ribosomal protein L3 [Dermacoccus sp. Ellin185]
gi|308433677|gb|EFP57554.1| 50S ribosomal protein L3 [Dermacoccus sp. Ellin185]
Length = 210
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 68/153 (44%)
Query: 135 GEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYC 194
GEK T V DN +I R E + +G DP TK
Sbjct: 6 GEKLGMTQVWDADNRLIPVTVVAVGPCVVTQLRSEGVDGYNAVQIGYGQIDPRKVTKPLT 65
Query: 195 GLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRW 254
G F+ +GV P++ L + G LTA F + +DV G T +GF GVMKR
Sbjct: 66 GHFEKAGVTPRRHLAELRTSDAGEYSLGQELTAEAFEAGQKVDVVGRTKGKGFAGVMKRH 125
Query: 255 GFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GF G+ A+HG ++HR+ G I A RV+ G
Sbjct: 126 GFAGVSASHGAHRNHRKPGSIGGCATPGRVFKG 158
>gi|429758165|ref|ZP_19290684.1| 50S ribosomal protein L3 [Actinomyces sp. oral taxon 181 str.
F0379]
gi|429173824|gb|EKY15333.1| 50S ribosomal protein L3 [Actinomyces sp. oral taxon 181 str.
F0379]
Length = 221
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 13/168 (7%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
L+G+ +G +W +G T+VQV N + + R E + +
Sbjct: 15 LLGRKLGMTQVWDADGRLVPLTVVQVGTNVVTQL-------------RTEETDGYTAIQL 61
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
G D TK F +GV P++ L + G L A+ F + +DV
Sbjct: 62 GFGDIDARKVTKPLAAHFAKAGVAPRRHLAEVRTSEADSFELGQELDASIFEAGQSVDVS 121
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T +GF GVMKR GF G+ A+HG ++HR+ G I + A R++ G
Sbjct: 122 GNTKGKGFAGVMKRHGFAGVSASHGSHRNHRKPGSIGACATPGRIFKG 169
>gi|71411062|ref|XP_807797.1| mitochondrial ribosomal protein L3 [Trypanosoma cruzi strain CL
Brener]
gi|70871872|gb|EAN85946.1| mitochondrial ribosomal protein L3, putative [Trypanosoma cruzi]
Length = 473
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 78/173 (45%), Gaps = 13/173 (7%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
S R G++G + + G + T DN I+++ R G + +
Sbjct: 135 SVRFGMVGVKAFTCKDYDELGNQFDCTAFWFPDNQIVRH-------STRNGDVGTDRVYV 187
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
G + V E P + +K +GVP K F ITPDA P GT L HF+P +
Sbjct: 188 GAMNVPVEFHKPHV-----AAFYKAAGVPVKHVCAGFPITPDAYAPVGTKLDVRHFKPGQ 242
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ + D GF+GVM R GF G G +K RR GC+ + G+ R+YPG
Sbjct: 243 EVTITFQNTDYGFRGVMFRHGFDGGYVWLGDSKWQRRPGCMGT-EGQKRIYPG 294
>gi|315056921|ref|XP_003177835.1| mitochondrial 54S ribosomal protein YmL9 [Arthroderma gypseum CBS
118893]
gi|311339681|gb|EFQ98883.1| 54S ribosomal protein L9 [Arthroderma gypseum CBS 118893]
Length = 304
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 2/100 (2%)
Query: 190 TKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPREFLDVRGLTVDRGFQ 248
TK G F +GV PK+ + F + +A +LP G + A F+ +++DVR + GF
Sbjct: 139 TKPMLGHFSANGVSPKRHIHEFRVKDEAGLLPIGEVINADWFQEGQYVDVRSNSRGMGFA 198
Query: 249 GVMKRWGFKGMPATHGVTKSHRRGGCIA-SGAGKARVYPG 287
G MK+WGF G +HGV+ +HR G A S G +RVYPG
Sbjct: 199 GAMKKWGFHGQDRSHGVSLTHRSLGSTAPSQGGGSRVYPG 238
>gi|336319935|ref|YP_004599903.1| 50S ribosomal protein L3 [[Cellvibrio] gilvus ATCC 13127]
gi|336103516|gb|AEI11335.1| 50S ribosomal protein L3 [[Cellvibrio] gilvus ATCC 13127]
Length = 219
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 15/171 (8%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
T L+G+ +G LW + G T+V++ N + + E G +L
Sbjct: 11 TALLGRKLGMTQLWDEAGRLVPVTVVEIGTNVVTQVRSAEA--------DGYAAVQLAFG 62
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAM-LPPGTPLTAAHFRPREFL 236
+ DP TK G F+ +GV P++ + I TP+A G L A F + +
Sbjct: 63 QI-----DPRKVTKPLKGHFEKAGVTPRRHVAE-IRTPNAAEFTLGQELDATAFEAGQLV 116
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T +G GVMKR GF G+ A+HG ++HR+ G I + +RV+ G
Sbjct: 117 DVIGTTKGKGTAGVMKRHGFSGVGASHGAHRNHRKPGSIGGASTPSRVFKG 167
>gi|452985252|gb|EME85009.1| hypothetical protein MYCFIDRAFT_41482 [Pseudocercospora fijiensis
CIRAD86]
Length = 307
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPP-GTPLTAAHFRPRE 234
+ VG + + T+ G F GVP K ++ F + + LP G+ +TA F+P +
Sbjct: 115 AVQVGFGTREARNVTRPERGHFAAQGVPLKSEVAEFRVKNEEGLPKVGSIITADLFQPGQ 174
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK-ARVYPG 287
+D RG+T GF G MKRWGF G PA+HG + +HR G + G +RV PG
Sbjct: 175 HVDARGVTRGMGFAGGMKRWGFSGQPASHGTSLTHRAMGSAGASQGSGSRVLPG 228
>gi|255536154|ref|YP_003096525.1| 50S ribosomal protein L3p (L3e) [Flavobacteriaceae bacterium
3519-10]
gi|255342350|gb|ACU08463.1| LSU ribosomal protein L3p (L3e) [Flavobacteriaceae bacterium
3519-10]
Length = 208
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 18/173 (10%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLG 175
+G+IGK IG L+ +NG+ T++Q + ++ I + +K + + + ++ +G
Sbjct: 2 SGIIGKKIGMTSLFDENGKNMPCTVIQAGPCSVLQVRTIEKDGYKAAQLGFDDKSEKNVG 61
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREF 235
L+G FK +G PK KL F L G + F EF
Sbjct: 62 KALIGH---------------FKKAGSAPKAKLVEFYHEFVDKLSVGDEVKVDLFSQGEF 106
Query: 236 LDVRGLTVDRGFQGVMKRWGFKG-MPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G + +GFQGV+KR F G M ATHG R G I +G+ +RV+ G
Sbjct: 107 VDVTGTSKGKGFQGVVKRHNFGGVMQATHGQHNRLRAPGSIGAGSDPSRVFKG 159
>gi|269796255|ref|YP_003315710.1| 50S ribosomal protein L3P [Sanguibacter keddieii DSM 10542]
gi|269098440|gb|ACZ22876.1| LSU ribosomal protein L3P [Sanguibacter keddieii DSM 10542]
Length = 219
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 13/170 (7%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
T ++G +G +W + G T+VQV N ++ + E G +L
Sbjct: 11 TAVLGTKLGMTQVWDEAGRLVPVTVVQVGTN-VVTQVRTAELD-------GYAAVQLAYG 62
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
+ DP ++ G F+ +GV P++ + + G LTA F +D
Sbjct: 63 QI-----DPRKVSQPLKGHFEKAGVTPRRHVTEIRTSDAGEFTLGQELTAEAFASGSVVD 117
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G T +GF GVMKR GF G+ A+HG K+HR+ G I + +RV+ G
Sbjct: 118 VIGTTKGKGFAGVMKRHGFHGVGASHGAHKNHRKPGSIGGASTPSRVFKG 167
>gi|315122818|ref|YP_004063307.1| 50S ribosomal protein L3 [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313496220|gb|ADR52819.1| 50S ribosomal protein L3 [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 221
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 172 RKLGCLLVGAESGDPSL--YTKEYCGLFKNSGVPPKKKLCRF-IITPDAMLPPGTPLTAA 228
+K G + V +GD + +K G F + PKK+L F + D +L G+ L+ +
Sbjct: 42 QKNGYMAVQVGAGDAKIKNVSKPMRGFFSSVNASPKKRLSEFRVQKEDELLQIGSVLSPS 101
Query: 229 HFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
HF + +DV G+T+ +GF G MKR F G+ A+HGV+ SHR G RV+
Sbjct: 102 HFNVGQLVDVTGVTIGKGFAGAMKRHNFAGLRASHGVSISHRSAGSTGCRQDPGRVF 158
>gi|239918199|ref|YP_002957757.1| 50S ribosomal protein L3 [Micrococcus luteus NCTC 2665]
gi|281415610|ref|ZP_06247352.1| 50S ribosomal protein L3 [Micrococcus luteus NCTC 2665]
gi|239839406|gb|ACS31203.1| LSU ribosomal protein L3P [Micrococcus luteus NCTC 2665]
Length = 216
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 80/179 (44%), Gaps = 17/179 (9%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
+T + GL+G +G +W ++ + T+V+ D +++ + EE
Sbjct: 1 MTNTQNIKGLLGTKLGMTQVWDEDNKLIPVTVVKA-DPNVVTQLRSEETD---------- 49
Query: 171 KRKLGCLLVGAESG--DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAA 228
G V G DP TK G F+ +GV P++ L A G +T
Sbjct: 50 ----GYTAVQIAYGQIDPRRVTKPLAGHFEKAGVTPRRHLVELRTADAAEYSLGQDVTVE 105
Query: 229 HFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F + +DV G T +GF G MKR GF G+ A+HG K+HR+ G + + RV+ G
Sbjct: 106 VFEAGQKVDVVGTTKGKGFAGAMKRHGFAGVGASHGAHKNHRKPGSVGGASTPGRVFKG 164
>gi|378550978|ref|ZP_09826194.1| hypothetical protein CCH26_12854 [Citricoccus sp. CH26A]
Length = 216
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G +G +W + + T+VQ N + + R E +
Sbjct: 9 GLLGTKLGMTQVWDADNKLIPVTVVQAEPNVVTQL-------------RNEDADGYAAVQ 55
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+ DP TK G F+ +GV P++ + A G +T F + +DV
Sbjct: 56 IAYGQIDPRKVTKPLAGHFEKAGVTPRRHVVELRTADTAEYTLGQDVTVEVFEAGQKVDV 115
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T +GF G MKR GF G+ A+HG K+HR+ G + + RV+ G
Sbjct: 116 VGTTKGKGFAGAMKRHGFSGVGASHGAHKNHRKPGSVGGASTPGRVFKG 164
>gi|294055221|ref|YP_003548879.1| 50S ribosomal protein L3 [Coraliomargarita akajimensis DSM 45221]
gi|293614554|gb|ADE54709.1| 50S ribosomal protein L3 [Coraliomargarita akajimensis DSM 45221]
Length = 214
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKL 174
+ L+GK IG ++ +N T+++ + +K + + + YR + + +L
Sbjct: 2 KVALLGKKIGMTQVFDENNRLVPVTVIEAGPCPVTQVKTSEKDGYSAVQIGYRAQKEHRL 61
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
+K G FK +GV P +L F + + L G LT F +
Sbjct: 62 ---------------SKAALGHFKKAGVEPLAELREFRVAAEGELNVGDVLTVEKFEAGQ 106
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
+DV G T RGFQGV+KRWGF G PA+HG + HRRGG
Sbjct: 107 KIDVIGTTKGRGFQGVVKRWGFHGGPASHG-SMFHRRGGS 145
>gi|451813307|ref|YP_007449760.1| large subunit ribosomal protein L3 [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
gi|451779276|gb|AGF50156.1| large subunit ribosomal protein L3 [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
Length = 231
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 20/184 (10%)
Query: 109 LEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPY 166
L T++S R G++G+ +G ++ +GE T++ V +N I IK + + + + Y
Sbjct: 6 LNSTSTSYRLGMVGRKVGMTRIFTDDGESIPVTVLDVSNNRIAQIKSVEKDGYTAVQLAY 65
Query: 167 RGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLP--PGTP 224
G PS TK G + +G+ L F + P L G+
Sbjct: 66 ---------------GVGKPSRITKPLAGHYSKAGIDAGSVLKEFRLNPSDSLDFVVGSI 110
Query: 225 LTA-AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKAR 283
L + F + +DV G T+ +GF G +KR F A+HG ++SHR G I R
Sbjct: 111 LDINSIFEVGQEVDVSGTTIGKGFAGAIKRHNFSSQRASHGNSRSHRAPGSIGQSQDPGR 170
Query: 284 VYPG 287
V+PG
Sbjct: 171 VFPG 174
>gi|254579248|ref|XP_002495610.1| mitochondrial 54S ribosomal protein YmL9 [Zygosaccharomyces rouxii]
gi|238938500|emb|CAR26677.1| ZYRO0B15444p [Zygosaccharomyces rouxii]
Length = 273
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 15/203 (7%)
Query: 87 APAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMK-NGEKCRTTLVQV 145
AP+V + I+ P+ P Q + R G + K G P + + G++ T++++
Sbjct: 27 APSVANTIKLDAQPINHSPQQAQKRKWLPLRCGALTKKEGMMPFFDEATGKRVACTVLKM 86
Query: 146 VDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPK 205
+ ++ + EE C VG S P +++ G F + V PK
Sbjct: 87 DNVEVLMHRTMEE------------NGYFACQ-VGYGSKHPQKVSRQMLGHFASKLVNPK 133
Query: 206 KKLCRF-IITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHG 264
+++ F + D +LP GT + + F +++D++ + +GF GVMK++ F G+ A+HG
Sbjct: 134 ERVSEFRVKNEDGLLPLGTLIKPSFFNNGQYVDLKSICKGKGFAGVMKKYHFAGLRASHG 193
Query: 265 VTKSHRRGGCIASGAGKARVYPG 287
+ HR GG RV PG
Sbjct: 194 TSIMHRHGGSYGQNQDPGRVLPG 216
>gi|213403778|ref|XP_002172661.1| 50S ribosomal protein L3 [Schizosaccharomyces japonicus yFS275]
gi|212000708|gb|EEB06368.1| 50S ribosomal protein L3 [Schizosaccharomyces japonicus yFS275]
Length = 264
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 4/150 (2%)
Query: 142 LVQVVDNHIIKYIPPEEFKPNRKPYRG---EPKRKLGCLLVGAESGDPSLYTKEYCGLFK 198
+ V D + +P + +R G E + + +GA P ++ G F
Sbjct: 57 MTSVWDESTHQQVPVTVLQFDRVQVVGLKTEKRDGYSAVQMGAGLRLPHNVSRALQGHFS 116
Query: 199 NSGVPPKKKLCRFIITPDAMLPP-GTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFK 257
+GV PK+ + F + D+ LP GT LT +F+ + +DV+ LT +G GVMKRWG
Sbjct: 117 ANGVYPKRYVKEFQVKDDSCLPKVGTVLTPEYFQVGQHVDVKALTKGKGTAGVMKRWGLS 176
Query: 258 GMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G +HG +KSHR G ARV PG
Sbjct: 177 GGNDSHGASKSHRSAGGTGQAKIPARVLPG 206
>gi|289706533|ref|ZP_06502883.1| 50S ribosomal protein L3 [Micrococcus luteus SK58]
gi|289556668|gb|EFD50009.1| 50S ribosomal protein L3 [Micrococcus luteus SK58]
Length = 216
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 80/179 (44%), Gaps = 17/179 (9%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
+T + GL+G +G +W ++ + T+V+ D +++ + EE
Sbjct: 1 MTNTQNIKGLLGTKLGMTQVWDEDNKLIPVTVVKA-DPNVVTQLRSEETD---------- 49
Query: 171 KRKLGCLLVGAESG--DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAA 228
G V G DP TK G F+ +GV P++ L A G +T
Sbjct: 50 ----GYTAVQIAYGQIDPRRVTKPLAGHFEKAGVTPRRHLVELRTADAAEYELGQDVTVE 105
Query: 229 HFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F + +DV G T +GF G MKR GF G+ A+HG K+HR+ G + + RV+ G
Sbjct: 106 VFEAGQKVDVVGTTKGKGFAGAMKRHGFAGVGASHGAHKNHRKPGSVGGASTPGRVFKG 164
>gi|398389022|ref|XP_003847972.1| mitochondrial 54S ribosomal protein YmL9 [Zymoseptoria tritici
IPO323]
gi|339467846|gb|EGP82948.1| hypothetical protein MYCGRDRAFT_77496 [Zymoseptoria tritici IPO323]
Length = 306
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPP-GTPLTAAHFRPRE 234
+ VG + + T+ G F GVP K+ + F + +A L G+ +TA F+P +
Sbjct: 117 AVQVGCGTKEARNVTRPERGHFAAQGVPIKRHVAEFRVKNEAGLAEVGSVITADLFQPGQ 176
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK-ARVYPG 287
F+D R T GF G MKRWGF G PA+HG + +HR G + G +RV PG
Sbjct: 177 FIDARATTRGMGFAGGMKRWGFSGQPASHGNSLTHRAMGSAGASQGSGSRVLPG 230
>gi|258568440|ref|XP_002584964.1| 60S ribosomal protein L9 [Uncinocarpus reesii 1704]
gi|237906410|gb|EEP80811.1| 60S ribosomal protein L9 [Uncinocarpus reesii 1704]
Length = 301
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD-AMLPPGTPLTAAHFRPRE 234
+ VG +PS T+ G F + V PK+ + F + + +LP G + A F+ +
Sbjct: 120 AVQVGFGWKNPSNVTRPMLGHFAANEVSPKRYVHEFRVRDEVGLLPIGQMINADWFQEGQ 179
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIA-SGAGKARVYPG 287
F+DVR + GF GVMKRWGF G +HGV+ +HR G S G +RVYPG
Sbjct: 180 FVDVRSHSRGMGFTGVMKRWGFGGQDRSHGVSLTHRSLGSTGPSQGGGSRVYPG 233
>gi|451936807|ref|YP_007460661.1| large subunit ribosomal protein L3 [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777730|gb|AGF48705.1| large subunit ribosomal protein L3 [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 231
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 20/184 (10%)
Query: 109 LEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPY 166
L T++S R G++G+ +G ++ GE T++ V +N I IK + + + + Y
Sbjct: 6 LNSTSTSYRLGMLGRKVGMTRIFTDEGESIPVTVLDVSNNRIAQIKSVEKDGYAAVQLAY 65
Query: 167 RGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITP-DAM-LPPGTP 224
G PS K G + N+G+ + L F + P D++ G+
Sbjct: 66 ---------------GVGKPSRINKPLAGHYSNAGIESGRLLKEFRLNPVDSLDFTVGSV 110
Query: 225 LTA-AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKAR 283
L + F + +DV G T+ +GF G +KR F A+HG ++SHR G I R
Sbjct: 111 LDINSIFEVGQEVDVSGTTIGKGFAGAIKRHNFSSQRASHGNSRSHRAPGSIGQAQDPGR 170
Query: 284 VYPG 287
V+PG
Sbjct: 171 VFPG 174
>gi|323308966|gb|EGA62197.1| Mrpl9p [Saccharomyces cerevisiae FostersO]
Length = 235
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 16/204 (7%)
Query: 87 APAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKN-GEKCRTTLVQV 145
AP++ + I T + P KR GLI + G P + K+ GE+ T+++V
Sbjct: 28 APSIANSITTEAPAINHSPELANARKWLPKRCGLITRKKGMMPYFDKSTGERSAATILEV 87
Query: 146 VDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPK 205
+ +I + E C VG S S +++ G F + V PK
Sbjct: 88 NNVEVIMHRTSE------------VNGYFACQ-VGYGSRHLSKVSRQMLGHFASKVVNPK 134
Query: 206 KKLCRFIITPDAMLPPGTPL--TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATH 263
+ + F + + + + T F+ +++DVR ++ +GF GVMKR+GFKG+ A+H
Sbjct: 135 EHVAEFRVKDEKGINTTWHIIETVFFFKEGQYVDVRSVSKGKGFTGVMKRYGFKGLRASH 194
Query: 264 GVTKSHRRGGCIASGAGKARVYPG 287
G + HR GG RV PG
Sbjct: 195 GTSIMHRHGGSYGQNQDPGRVLPG 218
>gi|377557610|ref|ZP_09787252.1| 50S ribosomal protein L3 [Gordonia otitidis NBRC 100426]
gi|377525305|dbj|GAB32417.1| 50S ribosomal protein L3 [Gordonia otitidis NBRC 100426]
Length = 219
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
G++G +G ++ +N T++Q N I + R E + +
Sbjct: 9 GILGTKLGMTQVFDENNRVVPVTVIQAGPNVITQL-------------RSEDRDGYTAVQ 55
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+ + DP TK G F +GV P++ L ++ + G LTA F +DV
Sbjct: 56 LAYGAIDPRKVTKPVAGQFAKAGVTPRRHLAEIRVSDTSEFEVGQELTAEIFADGALVDV 115
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +GF GVMKR GF G+ A+HG + HR G I A RV+ G
Sbjct: 116 TGTSKGKGFAGVMKRHGFAGLGASHGAHRVHRAPGSIGGCATPGRVFKG 164
>gi|111220546|ref|YP_711340.1| 50S ribosomal protein L3 [Frankia alni ACN14a]
gi|123339021|sp|Q0RRS1.1|RL3_FRAAA RecName: Full=50S ribosomal protein L3
gi|111148078|emb|CAJ59746.1| 50S ribosomal subunit protein L3 [Frankia alni ACN14a]
Length = 234
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 72/169 (42%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G +G +W N T+++ N + + P+ G +LG
Sbjct: 8 GLLGTKLGMTQVWDANNRVVPVTVIKAGPNVVTQVKTPDS--------DGYSAVQLGYGE 59
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+ DP K G F SGV P++ L PG LT F +DV
Sbjct: 60 I-----DPRKINKPARGHFATSGVTPRRHLVELRTADAGNYRPGQELTGEVFAEGTVVDV 114
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +GF GVMKR GFKG+ A HGV + HR G + A RV+ G
Sbjct: 115 TGTSKGKGFAGVMKRHGFKGLGAGHGVERKHRSPGSVGGCATPGRVFKG 163
>gi|444335523|ref|YP_007391892.1| large subunit ribosomal protein L3 [Blattabacterium sp. (Blatta
orientalis) str. Tarazona]
gi|444299902|gb|AGD98139.1| large subunit ribosomal protein L3 [Blattabacterium sp. (Blatta
orientalis) str. Tarazona]
Length = 210
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 82/173 (47%), Gaps = 20/173 (11%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLIG +G L+ KNGE T+++V ++I+ E K +
Sbjct: 3 GLIGINLGMTSLFSKNGENIPCTIIKVGPCYVIQVKTME-------------KDGYSSIQ 49
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPP---GTPLTAAHFRPREF 235
+G TK G F+ SGV PKKKL F D ++P G+ + F E
Sbjct: 50 LGIIDKKEKHTTKALQGHFRKSGVFPKKKLLEF---KDVLIPSIKLGSQININSFVEGEL 106
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPA-THGVTKSHRRGGCIASGAGKARVYPG 287
+DVRG+T +GFQGV+KR F G+ +HG R G + +G+ +R++ G
Sbjct: 107 VDVRGITKGKGFQGVVKRHKFSGVGERSHGQHNRLRAPGSVGAGSDPSRIFKG 159
>gi|366998541|ref|XP_003684007.1| mitochondrial 54S ribosomal protein YmL9 [Tetrapisispora phaffii
CBS 4417]
gi|357522302|emb|CCE61573.1| hypothetical protein TPHA_0A04980 [Tetrapisispora phaffii CBS 4417]
Length = 269
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPREFLD 237
VG +P +++ G F + V PK ++ F + ++ +LP T + + F P +++D
Sbjct: 105 VGFGDKNPKKISRQMLGHFAKTVVNPKDRVAEFRVKDESGLLPLNTLIKPSFFTPGQYID 164
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
++ ++ +GF GVMKR FKG+ A+HG + HR GG RV PG
Sbjct: 165 IKSVSKGKGFAGVMKRHHFKGLRASHGTSIMHRHGGSFGQNQDPGRVLPG 214
>gi|229489469|ref|ZP_04383332.1| 50S ribosomal protein L3 [Rhodococcus erythropolis SK121]
gi|453068363|ref|ZP_21971642.1| 50S ribosomal protein L3 [Rhodococcus qingshengii BKS 20-40]
gi|259709732|sp|C0ZW25.1|RL3_RHOE4 RecName: Full=50S ribosomal protein L3
gi|226184456|dbj|BAH32560.1| 50S ribosomal protein L3 [Rhodococcus erythropolis PR4]
gi|229323566|gb|EEN89324.1| 50S ribosomal protein L3 [Rhodococcus erythropolis SK121]
gi|452766013|gb|EME24264.1| 50S ribosomal protein L3 [Rhodococcus qingshengii BKS 20-40]
Length = 218
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 78/175 (44%), Gaps = 13/175 (7%)
Query: 113 TSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKR 172
T +K G++G +G ++ +N T+V+ N ++ I EE R Y +
Sbjct: 2 TDTKIKGILGTKLGMTQVFDENNRVVPVTVVKAGPN-VVTQIRTEE----RDGYS-AVQL 55
Query: 173 KLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRP 232
G + DP K G F +GV P++ + + + G LTA F
Sbjct: 56 AFGAI-------DPRKVNKPTSGQFTKAGVTPRRHVVELRVADTSDYEVGQELTAEVFED 108
Query: 233 REFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
++DV G + +GF G MKR GFKG A+HG HRR G I A RV+ G
Sbjct: 109 GAYVDVTGTSKGKGFAGTMKRHGFKGQGASHGTQAVHRRPGSIGGCATPGRVFKG 163
>gi|452842416|gb|EME44352.1| hypothetical protein DOTSEDRAFT_72001, partial [Dothistroma
septosporum NZE10]
Length = 311
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPP-GTPLTAAHFRPRE 234
+ VGA + + T+ G F + VP K+ L F + + LP G+ +TA F+ +
Sbjct: 119 AVQVGAGTKEARNVTRPERGHFAANNVPIKRHLAEFRVKNEEGLPEVGSIITADLFQEGQ 178
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK-ARVYPG 287
++D RG T GF G MKRWGF G PA+HG + +HR G + G +RV PG
Sbjct: 179 YVDARGTTRGMGFAGGMKRWGFSGQPASHGNSLTHRAMGSAGASQGSGSRVLPG 232
>gi|288818164|ref|YP_003432512.1| 50S ribosomal protein L3 [Hydrogenobacter thermophilus TK-6]
gi|384128928|ref|YP_005511541.1| 50S ribosomal protein L3 [Hydrogenobacter thermophilus TK-6]
gi|288787564|dbj|BAI69311.1| ribosomal protein L3 [Hydrogenobacter thermophilus TK-6]
gi|308751765|gb|ADO45248.1| 50S ribosomal protein L3 [Hydrogenobacter thermophilus TK-6]
Length = 235
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 76/168 (45%), Gaps = 15/168 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLIGK +G +++K+G TL++ IPP + K L
Sbjct: 4 GLIGKKVGMTRVFLKDGTAIPVTLIE---------IPPHTVVA----IKSIEKDGYSALQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAH-FRPREFLD 237
+GA S TK G + GV ++L F + A G LT A F P E +D
Sbjct: 51 LGAYSAKEKHLTKPEMGHLQKVGVRLLRRLKEFRVDDIAGYQVGQELTVADVFSPGELVD 110
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
V G++ RGF G MKRW F G P +HG + HR G I + + RV+
Sbjct: 111 VVGISKGRGFTGTMKRWDFGGFPKSHG-HRYHRAVGSIGNRSDPGRVW 157
>gi|254501408|ref|ZP_05113559.1| ribosomal protein L3 [Labrenzia alexandrii DFL-11]
gi|222437479|gb|EEE44158.1| ribosomal protein L3 [Labrenzia alexandrii DFL-11]
Length = 232
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 13/168 (7%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
+I + +G ++ GE T++++ + ++ +R + K L +
Sbjct: 1 MIAQKVGMTRIYNDAGEHVPVTVLRLENCQVV-------------AHRTDEKNGYNALQL 47
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
GA + K G F + V PK+ + F ++ + M+ G +TA H+ +F+DV
Sbjct: 48 GAGTRKVKNTPKALRGHFAVAKVEPKRTVVEFRVSAENMIDVGAEITADHYVEGQFVDVT 107
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G ++ +GF GVMKR F G A+HG + SHR G RV+ G
Sbjct: 108 GTSIGKGFAGVMKRHNFGGGRASHGNSISHRSHGSTGQCQDPGRVFKG 155
>gi|328543358|ref|YP_004303467.1| 50S ribosomal protein L3 [Polymorphum gilvum SL003B-26A1]
gi|326413103|gb|ADZ70166.1| 50S ribosomal protein L3 [Polymorphum gilvum SL003B-26A1]
Length = 227
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 61/123 (49%)
Query: 165 PYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTP 224
+R E K L +GA + K G F + V PK+ + F ++ D ++ G
Sbjct: 28 AHRTEEKNGYTALQLGAGAAKVKNTPKAMRGHFAVAKVEPKRTIAEFRVSQDNLIDVGAE 87
Query: 225 LTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARV 284
+TA H+ +++DV G ++ +GF GVMKR F G ATHG + SHR G +V
Sbjct: 88 ITADHYVAGQYVDVTGTSIGKGFAGVMKRHNFGGGRATHGNSVSHRSHGSTGQRQDPGKV 147
Query: 285 YPG 287
+ G
Sbjct: 148 FKG 150
>gi|261749470|ref|YP_003257156.1| 50S ribosomal protein L3 [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497563|gb|ACX84013.1| 50S ribosomal protein L3 [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 210
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 18/172 (10%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLIG +G L+ KNGE T+V+V ++I+ E K +
Sbjct: 3 GLIGINLGMTSLFSKNGENIPCTIVKVGPCYVIQVKTME-------------KDGYSAIQ 49
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRF--IITPDAMLPPGTPLTAAHFRPREFL 236
+G TK G F+ SG+ PKKKL F +++P L G+ + F E +
Sbjct: 50 LGIIDKKEKHTTKALQGHFRKSGIFPKKKLLEFKDVLSPSIKL--GSQININSFVEGELV 107
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPA-THGVTKSHRRGGCIASGAGKARVYPG 287
DVRG+T +GFQGV+KR F G+ +HG R G + +G+ +R++ G
Sbjct: 108 DVRGITKGKGFQGVVKRHKFSGVGERSHGQHNRLRAPGSVGAGSDPSRIFKG 159
>gi|399216036|emb|CCF72724.1| unnamed protein product [Babesia microti strain RI]
Length = 322
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 14/181 (7%)
Query: 99 TPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEE 158
T I+ L+P+ +++R G++ +G LW GE+ T+ Q+ +++
Sbjct: 48 TQDDIKGLKPINPVWNTRRCGVLAYKLGCMSLWDDWGERHAVTVCQIDRCVVLER----- 102
Query: 159 FKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAM 218
R + +G G S TK G + V K + F + D +
Sbjct: 103 --------RTIATHGYEAVQLGIGYGPVSKQTKNNLGRYIKLNVGAKHIVNEFKCSSDCL 154
Query: 219 LPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGV-TKSHRRGGCIAS 277
LP G ++A HF P +++ V G + +GF+G M+RWGF G A+HG +K+H G I+
Sbjct: 155 LPEGHYMSANHFTPGQWVFVSGFSKPKGFKGAMRRWGFGGQNASHGTESKAHSAPGSISQ 214
Query: 278 G 278
G
Sbjct: 215 G 215
>gi|408501569|ref|YP_006865488.1| 50S ribosomal protein L3 [Bifidobacterium asteroides PRL2011]
gi|408466393|gb|AFU71922.1| 50S ribosomal protein L3 [Bifidobacterium asteroides PRL2011]
Length = 217
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R L+G+ +G +W +NG TLV V N ++ + +E K
Sbjct: 8 RKALLGRKLGMSQVWDENGFFVPVTLVDVSTN-VVTAVKNQE------------KDGYQA 54
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G DP+ TK G F +GV P++ L PG L +
Sbjct: 55 IQIGYGQIDPTKVTKPLAGHFAKAGVTPRRHLVEVRTADADSYQPGQELGLDLLPEGSEV 114
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T +GF G +KRWGFK THG K+ RR G + + A +R+ G
Sbjct: 115 DVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKG 165
>gi|156089107|ref|XP_001611960.1| 50S ribosomal protein L3 [Babesia bovis T2Bo]
gi|154799214|gb|EDO08392.1| 50S ribosomal protein L3, putative [Babesia bovis]
Length = 350
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 17/201 (8%)
Query: 88 PAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVD 147
P ++ E+ LKI+P + +S+R G++ +G LW GE+ T+
Sbjct: 65 PEHETFSESDVANLKIKPQVAI---WNSRRCGVLAYKLGCMSLWDDWGERHMVTVC---- 117
Query: 148 NHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKK 207
H+ + + E+ Y + +G + + +K+ G F +GV K
Sbjct: 118 -HVDRCVVLEKRTIAEHGYEA--------VQLGLGYRNINRQSKQNIGRFIKAGVGSKDH 168
Query: 208 LCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVT- 266
+ F + D +LP G ++ HF P +++ V G + +GFQG M+RW F G A+HG
Sbjct: 169 IAEFKCSSDCLLPVGHYMSVRHFTPGQWVFVSGWSQPKGFQGAMRRWHFGGQNASHGTEC 228
Query: 267 KSHRRGGCIASGAGKARVYPG 287
K+H G IA G V+ G
Sbjct: 229 KAHSAPGSIAQGKSAHIVWRG 249
>gi|398829355|ref|ZP_10587553.1| 50S ribosomal protein L3, bacterial [Phyllobacterium sp. YR531]
gi|398216840|gb|EJN03380.1| 50S ribosomal protein L3, bacterial [Phyllobacterium sp. YR531]
Length = 249
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ E+ G +LG
Sbjct: 2 RSGVIAQKLGMTRVYNDAGEHVPVTVLRMENCQVVAQRTVEK--------NGYTAVQLGV 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L ++ TK G F + V PK K+ F ++ D +L G +TA H+ + +
Sbjct: 54 GLAKVKN-----TTKSLRGHFATASVEPKAKVAEFRVSADNLLDVGVEITAEHYVAGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G ATHG + +HR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGSMKRHNFGGHRATHGNSVTHRAHGSTGQRQDPGKVFKG 159
>gi|407278741|ref|ZP_11107211.1| 50S ribosomal protein L3 [Rhodococcus sp. P14]
gi|452954080|gb|EME59485.1| 50S ribosomal protein L3 [Rhodococcus ruber BKS 20-38]
Length = 217
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 75/169 (44%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
G++G +G ++ +N T+V+ N ++ I EE R Y L
Sbjct: 7 GILGTKLGMTQVFDENNRVVPVTVVKAGPN-VVTQIRTEE----RDGYSAVQ------LA 55
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
GA DP TK G F +GV P++ + + + G LTA F F+DV
Sbjct: 56 YGAI--DPRKVTKPVAGQFAKAGVTPRRHIVELRVDDTDGIEIGQELTAEVFEDGAFVDV 113
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +GF G MKR GF G A+HG HRR G I A RV+ G
Sbjct: 114 TGTSKGKGFAGTMKRHGFAGQGASHGAQAVHRRPGSIGGCATPGRVFKG 162
>gi|402820855|ref|ZP_10870418.1| 50S ribosomal protein L3 [alpha proteobacterium IMCC14465]
gi|402510358|gb|EJW20624.1| 50S ribosomal protein L3 [alpha proteobacterium IMCC14465]
Length = 276
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%)
Query: 190 TKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQG 249
T G F + V PK+KL F +T D ++ G L A HF + +D G+++ +GF G
Sbjct: 51 TNAMRGHFAKAKVEPKRKLAEFRVTADNLIDIGAELAANHFLEGQKIDATGVSIGKGFAG 110
Query: 250 VMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 111 AMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 148
>gi|308446847|ref|XP_003087274.1| hypothetical protein CRE_26933 [Caenorhabditis remanei]
gi|308258134|gb|EFP02087.1| hypothetical protein CRE_26933 [Caenorhabditis remanei]
Length = 218
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G +G +W +NG+ T+++V N ++ I E +
Sbjct: 10 GLLGTKLGMTQVWDENGKVVPVTVIEVAPN-VVTQIRTAEVDG------------YSAVQ 56
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLT-AAHFRPREFLD 237
+ A DP + G F +GV P++ L A G LT F + +D
Sbjct: 57 IAAGQIDPRKVNQPTAGHFAKAGVTPRRHLTEVRTADAADYSLGQELTIDGTFEAGQKID 116
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G + +GF GVMKR F G+ A+HG ++HR+ G I A RV+ G
Sbjct: 117 VVGTSKGKGFAGVMKRHNFSGVSASHGAHRNHRKPGSIGGAATPGRVFKG 166
>gi|338534561|ref|YP_004667895.1| 50S ribosomal protein L3 [Myxococcus fulvus HW-1]
gi|337260657|gb|AEI66817.1| 50S ribosomal protein L3 [Myxococcus fulvus HW-1]
Length = 224
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 72/171 (42%), Gaps = 16/171 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLIGK IG ++ G T++ V ++ PE K K +
Sbjct: 3 GLIGKKIGMTQVFNDEGNLVPVTVIDVGTCQVVGKRTPE-------------KDKYSAVT 49
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD--AMLPPGTPLTAAHFRPREFL 236
+G + G FK + P ++ L F +TP+ A G + A F E +
Sbjct: 50 IGFGEIREKILNLAERGFFKKANAPYRRHLKEFRVTPEEAASFNVGDAVKADMFSKGELV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKG-MPATHGVTKSHRRGGCIASGAGKARVYP 286
DV G+T RGF GVM+RW FKG THG + R G I RVYP
Sbjct: 110 DVTGVTKGRGFSGVMRRWNFKGSQTKTHGTHEYQRHPGAIGQRKTPGRVYP 160
>gi|405981222|ref|ZP_11039549.1| 50S ribosomal protein L3 [Actinomyces neuii BVS029A5]
gi|404392146|gb|EJZ87206.1| 50S ribosomal protein L3 [Actinomyces neuii BVS029A5]
Length = 222
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 15/169 (8%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
L+G+ +G +W ++ + T+VQV N + + + N + G L
Sbjct: 16 LLGRKLGMTQVWDQDKKLVPITVVQVEKNVV------SQIRNNETDGYEAIQLAFGEL-- 67
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPREFLDV 238
DP TK G F+ +GV P++ + I TPDA G L A F +DV
Sbjct: 68 -----DPRKVTKPLKGHFEKAGVAPRRHIVE-IRTPDAGEYELGQELAADVFEAGTKVDV 121
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T +GF GVMKR GF G PA+HG + HR+ G I + A R++ G
Sbjct: 122 TGKTKGKGFAGVMKRHGFGGGPASHGAHRIHRKPGSIGACATPGRIFKG 170
>gi|288917230|ref|ZP_06411599.1| ribosomal protein L3 [Frankia sp. EUN1f]
gi|288351421|gb|EFC85629.1| ribosomal protein L3 [Frankia sp. EUN1f]
Length = 237
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 72/169 (42%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G +G +W N T++Q N + + + G +LG
Sbjct: 8 GLLGTKLGMTQVWDANNRVVPVTVIQAGPNVVTQVKTTDN--------DGYSAVQLGFGE 59
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+ DP K G F+ SGV P++ L G LT F + +DV
Sbjct: 60 I-----DPRRINKPLRGHFETSGVTPRRHLVELRTADAGNYRAGQELTGELFDAGQVVDV 114
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +GF GVMKR GFKG+ A HGV + HR G + A RV+ G
Sbjct: 115 TGTSKGKGFAGVMKRHGFKGLGAGHGVERKHRSPGSVGGCATPGRVFKG 163
>gi|302842094|ref|XP_002952591.1| plastid/chloroplast ribosomal protein L3 [Volvox carteri f.
nagariensis]
gi|300262230|gb|EFJ46438.1| plastid/chloroplast ribosomal protein L3 [Volvox carteri f.
nagariensis]
Length = 259
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 23/179 (12%)
Query: 116 KRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEE---FKPNRKPYRGEPKR 172
K G++G G + +NG T++ + + +++ + E+ + + Y+ +R
Sbjct: 42 KSLGVLGTKAGMMSYFTENGLCVPATVIALEEGNVVTQVKTEDTDGYNAVQVGYKAVAER 101
Query: 173 KLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLP---PGTPLTAAH 229
K+ TK G K +GV P + L F + A + PG L +
Sbjct: 102 KV---------------TKPELGHLKKAGVQPMRHLVEFKLKDRATVESYQPGQELDVSS 146
Query: 230 F-RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ E +D+ G+TV +GFQG +KRW K THG +KSHR G I S +RV+PG
Sbjct: 147 LLKEGEAVDIAGVTVGKGFQGTIKRWHHKRGAMTHG-SKSHREHGSIGSATTPSRVFPG 204
>gi|296130495|ref|YP_003637745.1| 50S ribosomal protein L3 [Cellulomonas flavigena DSM 20109]
gi|296022310|gb|ADG75546.1| 50S ribosomal protein L3 [Cellulomonas flavigena DSM 20109]
Length = 219
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 13/170 (7%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
T L+G +G +W + G T++ V N + + E G +L
Sbjct: 11 TALLGTKLGMTQVWDEAGRLVPVTVLAVGTNVVTQVRSAES--------DGYAAVQLAYG 62
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
+ DP TK G F+ +GV P++ + + A G +TA F + +D
Sbjct: 63 QI-----DPRKVTKPLKGHFEKAGVTPRRHVAEIRTSNAAEFTLGQEITAGAFEAGQVVD 117
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G T +G GVMKR GF G+ A+HG ++HR+ G I + +RV+ G
Sbjct: 118 VTGTTKGKGTAGVMKRHGFHGVGASHGAHRNHRKPGSIGGASTPSRVFKG 167
>gi|256825886|ref|YP_003149846.1| 50S ribosomal protein L3P [Kytococcus sedentarius DSM 20547]
gi|256689279|gb|ACV07081.1| LSU ribosomal protein L3P [Kytococcus sedentarius DSM 20547]
Length = 219
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
G++G +G +W ++ T+VQV N + + R + G +
Sbjct: 12 GVLGTKLGMTQVWDEDNRLVPVTVVQVAPNVVTQI-------------RTQDTDGYGAVQ 58
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+ DP + G F+ +GV P++ + G LT F +DV
Sbjct: 59 IATGDIDPRKVSNPLRGHFEKAGVTPRRHVTELRTADSGSYELGQELTVETFENGATVDV 118
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T +GF GVMKR GF G+ A+HG ++HR+ G I A RV+ G
Sbjct: 119 TGTTKGKGFAGVMKRHGFAGVSASHGAHRNHRKPGSIGGCATPGRVFRG 167
>gi|340359377|ref|ZP_08681863.1| 50S ribosomal protein L3 [Actinomyces sp. oral taxon 448 str.
F0400]
gi|339884698|gb|EGQ74466.1| 50S ribosomal protein L3 [Actinomyces sp. oral taxon 448 str.
F0400]
Length = 226
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 17/170 (10%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGCL 177
L+G +G +W + G T+V+V N + I+ I + ++ + + +RK+
Sbjct: 16 LLGTKLGMTQIWDEKGVLRPVTVVRVDTNVVTQIRTIETDGYEAVQLAFGEIDERKV--- 72
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
TK G F +GV P++ + PG L A F + +D
Sbjct: 73 ------------TKPLKGHFDKAGVSPRRHVAEVRTCLAGEFAPGQELDAKTFEVGQLVD 120
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G + +GF GVMKR GFKG+ A+HG ++HR+ G + + A R++ G
Sbjct: 121 VTGTSKGKGFAGVMKRHGFKGVSASHGAHRNHRKPGSVGACATPGRIFKG 170
>gi|405351384|ref|ZP_11022867.1| LSU ribosomal protein L3p (L3e) [Chondromyces apiculatus DSM 436]
gi|397093275|gb|EJJ23998.1| LSU ribosomal protein L3p (L3e) [Myxococcus sp. (contaminant ex DSM
436)]
Length = 224
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 72/171 (42%), Gaps = 16/171 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLIGK IG ++ G T++ V ++ PE K K +
Sbjct: 3 GLIGKKIGMTQVFNDEGNLVPVTVIDVGTCQVVGKRTPE-------------KDKYSAVT 49
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD--AMLPPGTPLTAAHFRPREFL 236
+G + G FK + P ++ L F +TP+ A G + A F E +
Sbjct: 50 IGYGEIREKILNLAERGFFKKANAPYRRHLKEFRVTPEEAASFNVGDAVKADMFAKGELV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKG-MPATHGVTKSHRRGGCIASGAGKARVYP 286
DV G+T RGF GVM+RW FKG THG + R G I RVYP
Sbjct: 110 DVTGVTKGRGFAGVMRRWNFKGSQTKTHGTHEYQRHPGAIGQRKTPGRVYP 160
>gi|326332191|ref|ZP_08198471.1| 50S ribosomal protein L3 [Nocardioidaceae bacterium Broad-1]
gi|325949897|gb|EGD41957.1| 50S ribosomal protein L3 [Nocardioidaceae bacterium Broad-1]
Length = 218
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 72/169 (42%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G +G LW +N T++ N + + PE N +
Sbjct: 9 GLLGTKLGMTQLWDENNVVVPVTVIAANTNVVTQVRTPEVDGYN-------------AVQ 55
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+G D K G F+ +G P++ L A G L+ F E +DV
Sbjct: 56 IGYGEIDGRKVNKPGAGQFEKAGTTPRRHLAEIRTADAASYSAGQELSVDTFAVGEEIDV 115
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +GF G MKR GF G+ A+HG ++HR+ G I + A RV+ G
Sbjct: 116 TGTSKGKGFAGTMKRHGFAGVSASHGAHRNHRKPGSIGACATPGRVFKG 164
>gi|377574985|ref|ZP_09803993.1| 50S ribosomal protein L3 [Mobilicoccus pelagius NBRC 104925]
gi|377536281|dbj|GAB49158.1| 50S ribosomal protein L3 [Mobilicoccus pelagius NBRC 104925]
Length = 222
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 15/181 (8%)
Query: 109 LEITTSSKR--TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPY 166
+ I++ ++R TG++G+ +G +W + T+V+ + +
Sbjct: 3 MSISSKTERPVTGVLGEKLGMTQMWDADNRLVPVTVVKAGPCVVTQV------------- 49
Query: 167 RGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLT 226
R E + + + DP + G F+ +GV P++ L + G +T
Sbjct: 50 RTEDADGYNAVQIAFGAIDPRKVNQPMTGHFEKAGVTPRRHLVELRTSEAGTFNAGQEIT 109
Query: 227 AAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYP 286
A F + +DV G T +GF GVMKR GF G+ A+HG ++HR+ G I + A +RV+
Sbjct: 110 AEAFEVGQRVDVVGRTKGKGFAGVMKRHGFSGVSASHGAHRNHRKPGSIGACATPSRVFR 169
Query: 287 G 287
G
Sbjct: 170 G 170
>gi|84494786|ref|ZP_00993905.1| putative ribosomal protein L3 [Janibacter sp. HTCC2649]
gi|84384279|gb|EAQ00159.1| putative ribosomal protein L3 [Janibacter sp. HTCC2649]
Length = 218
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 53/103 (51%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP TK G F+ +GV P++ L A G LTA F + +D+ T
Sbjct: 64 DPRKVTKPLTGHFEKAGVTPRRHLVELRTADAAEYSLGQELTAETFEAGQAVDISATTKG 123
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GF GVMKR GF G+ ++HG K+HR+ G I A RV+ G
Sbjct: 124 KGFAGVMKRHGFHGVSSSHGSHKNHRKPGSIGGCATPGRVFKG 166
>gi|152964657|ref|YP_001360441.1| 50S ribosomal protein L3 [Kineococcus radiotolerans SRS30216]
gi|189042849|sp|A6W5T8.1|RL3_KINRD RecName: Full=50S ribosomal protein L3
gi|151359174|gb|ABS02177.1| ribosomal protein L3 [Kineococcus radiotolerans SRS30216]
Length = 219
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 17/171 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
G++G +G LW + T+V+V N + I+ + ++ + +RK
Sbjct: 8 GVLGTKLGMTQLWDADNRIVPVTVVKVEPNVVTQIRTTTVDGYEAVQLATTAIAQRK--- 64
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
TK G F+ +GV P++ L T A G +TA F +
Sbjct: 65 ------------ATKPAAGHFEKAGVAPRRHLVELRTTDAADYSLGQEVTAEAFATGATV 112
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T +GF GVMKR GF G+ A+HG ++HR+ G I A RV+ G
Sbjct: 113 DVVGTTKGKGFAGVMKRHGFHGVGASHGAHRNHRKPGSIGGCATPGRVFKG 163
>gi|449301722|gb|EMC97733.1| hypothetical protein BAUCODRAFT_33458 [Baudoinia compniacensis UAMH
10762]
Length = 267
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRF-IITPDAMLPPGTPLTAAHFRPRE 234
+ VG + + T+ G + GVP K+ L F + D + G+ +TA F+ +
Sbjct: 78 AVQVGCGTKEARNVTRPERGHYAAQGVPLKRHLAEFRVKNADGLPEVGSVITADLFQEGQ 137
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK-ARVYPG 287
++D RG+T GF G MKRWG+ G PA+HG + +HR G + G +RV+PG
Sbjct: 138 YIDARGITRGMGFAGGMKRWGWGGQPASHGTSLTHRAMGSAGASQGSGSRVHPG 191
>gi|429329816|gb|AFZ81575.1| 50S ribosomal protein L3, putative [Babesia equi]
Length = 347
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 17/179 (9%)
Query: 101 LKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFK 160
+ I+P++P+ T R G++ +G LW GE+ T+ V +I+
Sbjct: 75 IGIKPIKPIWNTI---RAGVLAYKVGCMSLWDDWGERHAVTVCHVDRCVVIE-------- 123
Query: 161 PNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLP 220
RK PK L +G + + TK G F G+ K + F + D +LP
Sbjct: 124 --RKTI---PKHGYEALQLGLGYKNVNTQTKPNIGRFIKLGIGSKDHIAEFKCSSDCLLP 178
Query: 221 PGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVT-KSHRRGGCIASG 278
G ++ HF P +++ V G + +GF+G M+RW F G +HG K+H G I+ G
Sbjct: 179 EGHYMSVRHFTPGQWVFVSGWSKQKGFKGAMRRWHFGGQSKSHGTECKAHSAPGSISQG 237
>gi|453382481|dbj|GAC83128.1| 50S ribosomal protein L3 [Gordonia paraffinivorans NBRC 108238]
Length = 219
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
++ S G++G +G ++ +N T++Q N I + R +
Sbjct: 1 MSNQSSTKGILGTKLGMTQVFDENNRVVPVTVIQAGPNVITQL-------------RTQE 47
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
K + + + DP TK G F +GV P++ L + + G LTA F
Sbjct: 48 KDGYTAVQIAYGAIDPRKVTKPVAGQFAKAGVTPRRHLAEIRVNDVSEFEVGQELTAEIF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G + +GF G MKR GF G+ A+HG + HR G I A RV+ G
Sbjct: 108 ADGALVDVTGTSKGKGFAGAMKRHGFAGLGASHGAHRVHRAPGSIGGCATPGRVFKG 164
>gi|111023096|ref|YP_706068.1| 50S ribosomal protein L3 [Rhodococcus jostii RHA1]
gi|226365595|ref|YP_002783378.1| 50S ribosomal protein L3 [Rhodococcus opacus B4]
gi|397736516|ref|ZP_10503198.1| 50S ribosomal protein L3 [Rhodococcus sp. JVH1]
gi|123339772|sp|Q0S3H6.1|RL3_RHOSR RecName: Full=50S ribosomal protein L3
gi|254803687|sp|C1B012.1|RL3_RHOOB RecName: Full=50S ribosomal protein L3
gi|110822626|gb|ABG97910.1| 50S ribosomal protein L3 [Rhodococcus jostii RHA1]
gi|226244085|dbj|BAH54433.1| 50S ribosomal protein L3 [Rhodococcus opacus B4]
gi|396927706|gb|EJI94933.1| 50S ribosomal protein L3 [Rhodococcus sp. JVH1]
Length = 218
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 77/175 (44%), Gaps = 13/175 (7%)
Query: 113 TSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKR 172
T +K G++G +G ++ +N T+V+ N ++ I EE R Y +
Sbjct: 2 TDTKIKGILGTKLGMTQVFDENNRVVPVTVVKAGPN-VVTQIRTEE----RDGYS-AVQL 55
Query: 173 KLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRP 232
G + DP K G F +GV P++ + + + G LTA F
Sbjct: 56 AFGAI-------DPRKVNKPTSGQFAKAGVTPRRHVVELRVADTSEYEVGQELTAEVFED 108
Query: 233 REFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
++DV G + +GF G MKR GF G A+HG HRR G I A RV+ G
Sbjct: 109 GAYVDVTGTSKGKGFAGTMKRHGFAGQGASHGAQAVHRRPGSIGGCATPGRVFKG 163
>gi|377563819|ref|ZP_09793150.1| 50S ribosomal protein L3 [Gordonia sputi NBRC 100414]
gi|377529033|dbj|GAB38315.1| 50S ribosomal protein L3 [Gordonia sputi NBRC 100414]
Length = 218
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 76/177 (42%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
++ S G++G +G ++ +N T++Q N I + E R Y
Sbjct: 1 MSNQSATKGILGTKLGMTQVFDENNRVVPVTVIQAGPNVITQLRNAE-----RDGYTAVQ 55
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
L GA DP TK G F +GV P++ L + + G LTA F
Sbjct: 56 ------LAYGAI--DPRKVTKPVAGQFAKAGVTPRRHLAEIRVADTSEFEVGQELTAEIF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G + +GF G MKR GF G+ A+HG + HR G I A RV+ G
Sbjct: 108 ADGALVDVTGTSKGKGFAGAMKRHGFSGLGASHGAHRVHRAPGSIGGCATPGRVFKG 164
>gi|325000492|ref|ZP_08121604.1| ribosomal protein L3 [Pseudonocardia sp. P1]
Length = 225
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 51/103 (49%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP K G F +GV P++ L A PG +TA F +DV G+T
Sbjct: 69 DPRKVNKPETGHFAKAGVTPRRHLLELRTADAADYTPGQEITAEAFAEIAEVDVVGVTKG 128
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GF GVMKR GF G+ A+HG + HR G I A RV+ G
Sbjct: 129 KGFAGVMKRHGFAGLGASHGTQRKHRSPGSIGGCATPGRVFKG 171
>gi|262341013|ref|YP_003283868.1| 50S ribosomal protein L3 [Blattabacterium sp. (Blattella germanica)
str. Bge]
gi|262272350|gb|ACY40258.1| 50S ribosomal protein L3 [Blattabacterium sp. (Blattella germanica)
str. Bge]
Length = 210
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 14/169 (8%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
+GLIGK IG ++++NG+ T+++V ++I+ I E G ++KL
Sbjct: 2 SGLIGKNIGMTSIFLENGKNVPCTVIKVNPCYVIQ-IKTVENDGYFSVQLGTGEKKL--- 57
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
++ +P L G FK SG+ P+KKL F + L G ++ F+ E ++
Sbjct: 58 ---KKTNNPLL------GHFKKSGLSPRKKLLEFRENSISHLKLGEKVSVDTFKKGELVN 108
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPA-THGVTKSHRRGGCIASGAGKARVY 285
V+G++ +GFQGV+KR F G+ +HG R G I +G+ +RV+
Sbjct: 109 VKGISKGKGFQGVVKRHNFSGVGERSHGQHNRLRSPGSIGAGSDPSRVF 157
>gi|323348471|gb|EGA82716.1| Mrpl9p [Saccharomyces cerevisiae Lalvin QA23]
Length = 164
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 217 AMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIA 276
++PPGT L + F+ +++DVR ++ +GF GVMKR+GFKG+ A+HG + HR GG
Sbjct: 12 GLIPPGTLLKPSFFKEGQYVDVRSVSKGKGFTGVMKRYGFKGLRASHGTSIMHRHGGSYG 71
Query: 277 SGAGKARVYPG 287
RV PG
Sbjct: 72 QNQDPGRVLPG 82
>gi|384106918|ref|ZP_10007822.1| 50S ribosomal protein L3 [Rhodococcus imtechensis RKJ300]
gi|419961175|ref|ZP_14477184.1| 50S ribosomal protein L3 [Rhodococcus opacus M213]
gi|424851584|ref|ZP_18275981.1| 50S ribosomal protein L3 [Rhodococcus opacus PD630]
gi|432336151|ref|ZP_19587681.1| 50S ribosomal protein L3 [Rhodococcus wratislaviensis IFP 2016]
gi|356666249|gb|EHI46320.1| 50S ribosomal protein L3 [Rhodococcus opacus PD630]
gi|383833369|gb|EID72832.1| 50S ribosomal protein L3 [Rhodococcus imtechensis RKJ300]
gi|414573496|gb|EKT84180.1| 50S ribosomal protein L3 [Rhodococcus opacus M213]
gi|430776919|gb|ELB92312.1| 50S ribosomal protein L3 [Rhodococcus wratislaviensis IFP 2016]
Length = 218
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 77/175 (44%), Gaps = 13/175 (7%)
Query: 113 TSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKR 172
T +K G++G +G ++ +N T+V+ N ++ I EE R Y +
Sbjct: 2 TDTKIKGILGTKLGMTQVFDENNRVVPVTVVKAGPN-VVTQIRTEE----RDGYS-AVQL 55
Query: 173 KLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRP 232
G + DP K G F +GV P++ + + + G LTA F
Sbjct: 56 AFGAI-------DPRKVNKPTSGQFTKAGVTPRRHVVELRVADTSEYEVGQELTAEVFED 108
Query: 233 REFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
++DV G + +GF G MKR GF G A+HG HRR G I A RV+ G
Sbjct: 109 GAYVDVTGTSKGKGFAGTMKRHGFAGQGASHGAQAVHRRPGSIGGCATPGRVFKG 163
>gi|327301767|ref|XP_003235576.1| mitochondrial 54S ribosomal protein YmL9 [Trichophyton rubrum CBS
118892]
gi|326462928|gb|EGD88381.1| 50S ribosomal protein L3 [Trichophyton rubrum CBS 118892]
Length = 302
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 190 TKEYCGLFKNSGVPPKKKLCRFIITPD-AMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQ 248
T+ G F +GV PK+ + F + + +LP G + A F+ +++DVR + GF
Sbjct: 137 TRPMLGHFSANGVSPKRHIHEFRVKDETGLLPIGEVINADWFQEGQYVDVRSNSRGMGFA 196
Query: 249 GVMKRWGFKGMPATHGVTKSHRRGGCIA-SGAGKARVYPG 287
G MK+WGF G +HGV+ +HR G A S G +RVYPG
Sbjct: 197 GAMKKWGFHGQDRSHGVSLTHRSLGSTAPSQGGGSRVYPG 236
>gi|71083804|ref|YP_266524.1| 50S ribosomal protein L3 [Candidatus Pelagibacter ubique HTCC1062]
gi|109893535|sp|Q4FLL8.1|RL3_PELUB RecName: Full=50S ribosomal protein L3
gi|71062917|gb|AAZ21920.1| 50S ribosomal protein L3 [Candidatus Pelagibacter ubique HTCC1062]
Length = 236
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 72/168 (42%), Gaps = 13/168 (7%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
LIGK IG + K G T++++ +I+ I E+ RG +LG +
Sbjct: 6 LIGKKIGMTREFYKTGRLVPVTVIKMEKARVIQVIEEEK--------RGYKAVQLGFGKI 57
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
A S TK GL+ KKKL F + + G F +F+D
Sbjct: 58 KA-----SKLTKAMKGLYAKKNTEAKKKLKEFRVKDTELYKEGNEFGLEIFNEVKFVDTT 112
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
T+ +GF G MKR F G+ ATHGV+ SHR G +V+ G
Sbjct: 113 SKTIGKGFAGAMKRHNFGGLRATHGVSVSHRSHGSTGQRQDPGKVFKG 160
>gi|342180443|emb|CCC89920.1| putative ribosomal protein L3 mitochondrial [Trypanosoma congolense
IL3000]
Length = 473
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 77/173 (44%), Gaps = 13/173 (7%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
S R G+IG + + G + T DN ++K+ R G K +
Sbjct: 135 SVRFGMIGVKAFTCKDYDELGNQFDCTAFWFPDNQVVKH-------SVRNDEVGTDKVFV 187
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
G + V E P + +K +GVP K F ITPDA P GT L HF+P +
Sbjct: 188 GAMNVPLEFHKPHV-----AAFYKAAGVPVKHVCAGFHITPDAYAPVGTKLDVRHFKPGQ 242
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ + D GF+GVM R GF G G +K RR G + + G+ R+YPG
Sbjct: 243 EVTITFQNTDYGFRGVMFRHGFDGGYVWLGDSKWQRRPGAMGT-EGQGRIYPG 294
>gi|404443139|ref|ZP_11008312.1| 50S ribosomal protein L3 [Mycobacterium vaccae ATCC 25954]
gi|403656053|gb|EJZ10877.1| 50S ribosomal protein L3 [Mycobacterium vaccae ATCC 25954]
Length = 218
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 77/174 (44%), Gaps = 16/174 (9%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R G++G +G ++ +N + T+V+ N + + PE R Y
Sbjct: 3 RKGILGTKLGMTQVFDENNKVVPVTVVKAGPNVVTRIRTPE-----RDGYSAVQ------ 51
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPP---GTPLTAAHFRPR 233
L G S P K G F +GV P++ L + +A + G LTA F
Sbjct: 52 LAYGEIS--PRKVNKPVTGQFAAAGVNPRRHLAELRLDDEAAVAEYEVGQELTAEIFADG 109
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F+DV G + +GF G MKR GFKG A+HG HRR G I A RV+ G
Sbjct: 110 AFVDVTGTSKGKGFAGTMKRHGFKGQGASHGAQAVHRRPGSIGGCATPGRVFKG 163
>gi|302498268|ref|XP_003011132.1| hypothetical protein ARB_02654 [Arthroderma benhamiae CBS 112371]
gi|291174680|gb|EFE30492.1| hypothetical protein ARB_02654 [Arthroderma benhamiae CBS 112371]
gi|326474709|gb|EGD98718.1| 50S ribosomal protein L3 [Trichophyton tonsurans CBS 112818]
gi|326484840|gb|EGE08850.1| 50S ribosomal protein L3 [Trichophyton equinum CBS 127.97]
Length = 304
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 190 TKEYCGLFKNSGVPPKKKLCRFIITPD-AMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQ 248
T+ G F +GV PK+ + F + + +LP G + A F+ +++DVR + GF
Sbjct: 139 TRPMLGHFSANGVSPKRHIHEFRVKDETGLLPIGEVINADWFQEGQYVDVRSNSRGMGFA 198
Query: 249 GVMKRWGFKGMPATHGVTKSHRRGGCIA-SGAGKARVYPG 287
G MK+WGF G +HGV+ +HR G A S G +RVYPG
Sbjct: 199 GAMKKWGFHGQDRSHGVSLTHRSLGSTAPSQGGGSRVYPG 238
>gi|444430856|ref|ZP_21226027.1| 50S ribosomal protein L3 [Gordonia soli NBRC 108243]
gi|443887905|dbj|GAC67748.1| 50S ribosomal protein L3 [Gordonia soli NBRC 108243]
Length = 224
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 78/177 (44%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
+T+ + G++G +G ++ +N T+VQ N I + E R Y
Sbjct: 1 MTSQAASKGILGTKLGMTQVFDENNRVVPVTVVQAGPNVITQLRTAE-----RDGYT-AV 54
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
+ G + DP TK G + +GV P++ L + A G LTA F
Sbjct: 55 QLAYGAI-------DPRKVTKPVAGQYGKAGVTPRRHLAEIRVGDVADFEIGQELTAEIF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G + +GF GVMKR GF G+ A+HG + HR G I A RV+ G
Sbjct: 108 AEGSQVDVTGTSKGKGFAGVMKRHGFSGLGASHGAHRVHRAPGSIGGCATPGRVFKG 164
>gi|302662377|ref|XP_003022845.1| hypothetical protein TRV_03069 [Trichophyton verrucosum HKI 0517]
gi|291186810|gb|EFE42227.1| hypothetical protein TRV_03069 [Trichophyton verrucosum HKI 0517]
Length = 304
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 190 TKEYCGLFKNSGVPPKKKLCRFIITPD-AMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQ 248
T+ G F +GV PK+ + F + + +LP G + A F+ +++DVR + GF
Sbjct: 139 TRPMLGHFSANGVSPKRHIHEFRVKDETGLLPIGEVINADWFQEGQYVDVRSNSRGMGFA 198
Query: 249 GVMKRWGFKGMPATHGVTKSHRRGGCIA-SGAGKARVYPG 287
G MK+WGF G +HGV+ +HR G A S G +RVYPG
Sbjct: 199 GAMKKWGFHGQDRSHGVSLTHRSLGSTAPSQGGGSRVYPG 238
>gi|452943478|ref|YP_007499643.1| 50S ribosomal protein L3 [Hydrogenobaculum sp. HO]
gi|452881896|gb|AGG14600.1| 50S ribosomal protein L3 [Hydrogenobaculum sp. HO]
Length = 232
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 74/167 (44%), Gaps = 14/167 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLIGK +G +++ +G T ++V N++I YI E +
Sbjct: 3 GLIGKKLGMMRVFLNDGTAIPVTAIKVEPNYVI-YIKSSETDG------------YNAIQ 49
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
VG+ S + K G FK + + P K L F + + G L F P E +D+
Sbjct: 50 VGSIPLKQSRFKKPMVGHFKKANLTPLKYLKEFRVDDVSSFALGQELGVDIFSPGELVDI 109
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
G + RGF G MKRW F G P +HG + HR G + + RV+
Sbjct: 110 VGRSKGRGFTGTMKRWDFGGFPKSHG-HRYHRAVGSVGNRTDPGRVW 155
>gi|108757306|ref|YP_631567.1| 50S ribosomal protein L3 [Myxococcus xanthus DK 1622]
gi|123374502|sp|Q1D706.1|RL3_MYXXD RecName: Full=50S ribosomal protein L3
gi|108461186|gb|ABF86371.1| ribosomal protein L3 [Myxococcus xanthus DK 1622]
Length = 224
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 71/171 (41%), Gaps = 16/171 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLIGK IG ++ G T++ V ++ PE K +
Sbjct: 3 GLIGKKIGMTQVFNDEGNLVPVTVIDVGTCQVVGKRTPE-------------KDNYSAVT 49
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD--AMLPPGTPLTAAHFRPREFL 236
+G + G FK + P ++ L F +TP+ A G + A F E +
Sbjct: 50 IGFGEIREKILNLAERGFFKKANAPYRRHLKEFRVTPEEAASFNVGDAVKADMFAKGELV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKG-MPATHGVTKSHRRGGCIASGAGKARVYP 286
DV G+T RGF GVM+RW FKG THG + R G I RVYP
Sbjct: 110 DVTGITKGRGFSGVMRRWNFKGSQTKTHGTHEYQRHPGAIGQRKTPGRVYP 160
>gi|339484185|ref|YP_004695971.1| 50S ribosomal protein L3 [Nitrosomonas sp. Is79A3]
gi|338806330|gb|AEJ02572.1| 50S ribosomal protein L3 [Nitrosomonas sp. Is79A3]
Length = 215
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 20/174 (11%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
GLIG+ IG ++ +NGE T++ V DN + IK I + + + + KR
Sbjct: 4 GLIGRKIGMTRIFTENGESLPVTVIDVSDNRVTQIKKIGKDGYSAVQLAF--GKKR---- 57
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA---MLPPGTPLTAAHFRPR 233
S K G F +GV L F I D L G + F+
Sbjct: 58 ---------ASRVNKSSAGHFAKAGVEAGSILKEFRINKDEDLDQLQNGMVIKNDIFKVG 108
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +DV G+T+ +G+ GV+KR F A+HG +K+H + G I R++PG
Sbjct: 109 QKVDVSGITIGKGYAGVIKRHHFSSNRASHGNSKAHNKPGSIGMAQDPGRIFPG 162
>gi|441511863|ref|ZP_20993710.1| 50S ribosomal protein L3 [Gordonia amicalis NBRC 100051]
gi|441453307|dbj|GAC51671.1| 50S ribosomal protein L3 [Gordonia amicalis NBRC 100051]
Length = 218
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
++ S G++G +G ++ +N T++Q N I + R +
Sbjct: 1 MSNQSSSKGILGTKLGMTQVFDENNRVVPVTVIQAGPNVITQL-------------RTQD 47
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
+ + + + DP TK G ++ +GV P++ L + + G LTA F
Sbjct: 48 RDGYTAVQLAYGAIDPRKVTKPVAGQYEKAGVTPRRHLAEIRVNDVSEFEVGQELTAEIF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G + +GF GVMKR GF G+ A+HG + HR G I A RV+ G
Sbjct: 108 ADGALVDVTGTSKGKGFAGVMKRHGFAGLGASHGAHRVHRAPGSIGGCATPGRVFKG 164
>gi|425766679|gb|EKV05280.1| 50S ribosomal protein L3 [Penicillium digitatum PHI26]
gi|425781892|gb|EKV19828.1| 50S ribosomal protein L3 [Penicillium digitatum Pd1]
Length = 300
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 100/218 (45%), Gaps = 31/218 (14%)
Query: 88 PAVKSGIETYNTP----LKIEPLQPLEITTSSK-----------RTGLIGKIIGQYPLWM 132
P GI + N P I P P+ +TS+ RTG IG G ++
Sbjct: 25 PVRSFGIRSLNPPKPSRFNIGPGLPVLESTSTAALRRKANSLPLRTGAIGIKKGMTAIYD 84
Query: 133 -KNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTK 191
++G++ T++Q+ +I + E R Y + VGA PS TK
Sbjct: 85 PESGKRIPCTVLQLDRVEVISHKTRE-----RHGYY--------AVQVGAGWKHPSNVTK 131
Query: 192 EYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGV 250
G F +G+ PK+ + F + +A ++P G + A F+ +F+D R T +GF GV
Sbjct: 132 SLLGHFSANGLSPKRHIFEFRVKDEAGLIPVGQSIEAGWFQEGQFVDARSNTKGKGFAGV 191
Query: 251 MKRWGFKGMPATHGVTKSHR-RGGCIASGAGKARVYPG 287
MKR GF G +HGV+ +HR G G +RVYPG
Sbjct: 192 MKRHGFHGQDRSHGVSLTHRSMGSSGPGQGGGSRVYPG 229
>gi|410867096|ref|YP_006981707.1| 50S ribosomal protein L3 [Propionibacterium acidipropionici ATCC
4875]
gi|410823737|gb|AFV90352.1| 50S ribosomal protein L3 [Propionibacterium acidipropionici ATCC
4875]
Length = 223
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 75/169 (44%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
G++G +G LW +N T++Q + + PE G +LG
Sbjct: 9 GVLGTKLGMTQLWDENNRIVPVTVIQAGPCVVTQVRTPE--------TDGYSAVQLGFGA 60
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
V A++ TK G F+ +GV P++ L + G +TA F E +DV
Sbjct: 61 VKAKN-----VTKPEAGHFERAGVTPRRHLVELRTADASEYTLGQEITADVFETAEVVDV 115
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T G GVMKR GFKG+ ATHGV + HR G I + +V G
Sbjct: 116 TGTTKGHGTAGVMKRHGFKGLRATHGVHRKHRSPGSIGGCSTPGKVLKG 164
>gi|384228493|ref|YP_005620228.1| 50S ribosomal protein L3 [Buchnera aphidicola str. Ua (Uroleucon
ambrosiae)]
gi|345539426|gb|AEO08293.1| 50S ribosomal protein L3 [Buchnera aphidicola str. Ua (Uroleucon
ambrosiae)]
Length = 209
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 74/171 (43%), Gaps = 17/171 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
GL+GK +G ++ K G T++++ DN I +K I + +
Sbjct: 3 GLVGKKLGMTRIFTKEGTSVPVTVIELQDNRITQVKNINTDRYD---------------A 47
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ V + K G F SGV P + L F IT D + G + F + +
Sbjct: 48 IQVTTGIKKINRLNKPKSGHFLKSGVVPGRGLWEFRITKDQIFKIGMSIKIDLFNNVKKV 107
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G++ +GF G +KRW F ATHG + SHR G I RV+ G
Sbjct: 108 DVTGISKGKGFCGTVKRWNFHTQDATHGNSLSHRVPGSIGQNQTPGRVFKG 158
>gi|256831827|ref|YP_003160554.1| 50S ribosomal protein L3 [Jonesia denitrificans DSM 20603]
gi|256685358|gb|ACV08251.1| ribosomal protein L3 [Jonesia denitrificans DSM 20603]
Length = 219
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 17/170 (10%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGCL 177
++GK +G +W + G T+V V N + I+ + + + +
Sbjct: 13 VLGKKLGMTQVWDEAGRLVPVTVVAVEPNVVTQIRTVDNDGYA---------------AV 57
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
V DP TK G F+ +GV P++ + + G +T F +D
Sbjct: 58 QVATGQIDPRKVTKPLKGHFEKAGVTPRRHVTEIRTSDSGEYSLGQEVTVGVFEAGTKVD 117
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G T +GF GVMKR GF G A+HG ++HR+ G I + A +RV+ G
Sbjct: 118 VIGTTKGKGFAGVMKRHGFAGASASHGAHRNHRKPGSIGAAATPSRVFKG 167
>gi|328951236|ref|YP_004368571.1| 50S ribosomal protein L3 [Marinithermus hydrothermalis DSM 14884]
gi|328451560|gb|AEB12461.1| 50S ribosomal protein L3 [Marinithermus hydrothermalis DSM 14884]
Length = 206
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 186 PSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDR 245
P K G F+ +GV P R++ P G +T + F+P E +DV G++ R
Sbjct: 56 PQRVNKPMKGHFEKAGVEP----VRYLREIRGFNPEGDVVTVSIFQPGERVDVTGISKGR 111
Query: 246 GFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GF GVMKRWGF G P +HG + HR G I RVY G
Sbjct: 112 GFTGVMKRWGFAGGPDSHGAHRIHRHPGSIGQRKTPGRVYKG 153
>gi|379009463|ref|YP_005267276.1| 50S ribosomal protein L3 [Wigglesworthia glossinidia endosymbiont
of Glossina morsitans morsitans (Yale colony)]
gi|375157987|gb|AFA41053.1| 50S ribosomal subunit protein L3 [Wigglesworthia glossinidia
endosymbiont of Glossina morsitans morsitans (Yale
colony)]
Length = 218
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 13/178 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G+ IG ++ G+ T++Q+ +N I++ + K +
Sbjct: 3 GLVGRKIGMTQIFNAQGQIIPVTVIQIHENRIVQI-------------KNMQNDKYSAIQ 49
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+ + K G FK + + + L F I + L G + + + +D+
Sbjct: 50 ITTGIKNSKNINKSIIGHFKKANISLGRGLWEFRINKNHDLHVGQKFSIENLNKTKKVDI 109
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
G++ +GF G MKRW F G A+HG + SHR G I +V+ G + L C
Sbjct: 110 TGISKGKGFSGTMKRWNFSGQDASHGNSLSHRAPGSIGQNQTPGKVFKGKKMSGQLGC 167
>gi|343927783|ref|ZP_08767251.1| 50S ribosomal protein L3 [Gordonia alkanivorans NBRC 16433]
gi|404258110|ref|ZP_10961432.1| 50S ribosomal protein L3 [Gordonia namibiensis NBRC 108229]
gi|409388583|ref|ZP_11240549.1| 50S ribosomal protein L3 [Gordonia rubripertincta NBRC 101908]
gi|343762424|dbj|GAA14177.1| 50S ribosomal protein L3 [Gordonia alkanivorans NBRC 16433]
gi|403201259|dbj|GAB83783.1| 50S ribosomal protein L3 [Gordonia rubripertincta NBRC 101908]
gi|403403198|dbj|GAB99841.1| 50S ribosomal protein L3 [Gordonia namibiensis NBRC 108229]
Length = 218
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
++ S G++G +G ++ +N T++Q N I + R +
Sbjct: 1 MSNQSSSKGILGTKLGMTQVFDENNRVVPVTVIQAGPNVITQL-------------RTQD 47
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
+ + + + DP TK G ++ +GV P++ L + + G LTA F
Sbjct: 48 RDGYTAVQLAYGAIDPRKVTKPVAGQYEKAGVTPRRHLAEIRVNDVSEFEIGQELTAEIF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G + +GF GVMKR GF G+ A+HG + HR G I A RV+ G
Sbjct: 108 ADGALVDVTGTSKGKGFAGVMKRHGFAGLGASHGAHRVHRAPGSIGGCATPGRVFKG 164
>gi|441507377|ref|ZP_20989303.1| 50S ribosomal protein L3 [Gordonia aichiensis NBRC 108223]
gi|441448453|dbj|GAC47264.1| 50S ribosomal protein L3 [Gordonia aichiensis NBRC 108223]
Length = 219
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 76/177 (42%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
++ S G++G +G ++ +N T++Q N I + +R Y
Sbjct: 1 MSNQSATKGILGTKLGMTQVFDENNRVVPVTVIQAGPNVITQL-----RSADRDGYTAVQ 55
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
L GA DP TK G F +GV P++ L + + G LTA F
Sbjct: 56 ------LAYGAI--DPRKVTKPVAGQFAKAGVTPRRHLAEIRVADTSEFEVGQELTAEIF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G + +GF G MKR GF G+ A+HG + HR G I A RV+ G
Sbjct: 108 ADGALVDVTGTSKGKGFAGAMKRHGFSGLGASHGAHRVHRAPGSIGGCATPGRVFKG 164
>gi|378729282|gb|EHY55741.1| 50S ribosomal protein L3 [Exophiala dermatitidis NIH/UT8656]
Length = 319
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 84/176 (47%), Gaps = 20/176 (11%)
Query: 117 RTGLIGKIIGQYPLW-MKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLG 175
RTG + G ++ +++G++ T++Q+ N ++ + + +++ G
Sbjct: 80 RTGALAIKKGMTAIYDVESGKRIPCTVLQLDRNEVVSH---------------KTRKRHG 124
Query: 176 CLLVGAESG--DPSLYTKEYCGLFKNSGVPPKKKLCRFII-TPDAMLPPGTPLTAAHFRP 232
V SG +P TK G F GV PK+ L F + D +LP G + A F
Sbjct: 125 YYAVCVGSGLVNPKNVTKPMLGHFSVQGVSPKRYLREFRVRNRDGLLPIGEEIRANWFEA 184
Query: 233 REFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCI-ASGAGKARVYPG 287
+F+D R +GF G MKRWGF G +HG + SHR G + G +RVYPG
Sbjct: 185 GQFVDTRSNCKGKGFAGPMKRWGFHGQDRSHGHSLSHRSHGTLGQGQGGGSRVYPG 240
>gi|88608492|ref|YP_506157.1| 50S ribosomal protein L3 [Neorickettsia sennetsu str. Miyayama]
gi|88600661|gb|ABD46129.1| ribosomal protein L3 [Neorickettsia sennetsu str. Miyayama]
Length = 210
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%)
Query: 197 FKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGF 256
K G+ ++ F ++P M P LT HFRP +++D G ++ +GF GVMKR F
Sbjct: 65 LKKLGLEKGGRVVEFRVSPRFMPEPLGSLTVEHFRPGQYVDAVGTSIGKGFAGVMKRHNF 124
Query: 257 KGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G+ A+HGV+ SHR GG +V+ G
Sbjct: 125 AGLRASHGVSISHRSGGSTGQCQDPGKVFKG 155
>gi|195952643|ref|YP_002120933.1| 50S ribosomal protein L3 [Hydrogenobaculum sp. Y04AAS1]
gi|226730524|sp|B4U744.1|RL3_HYDS0 RecName: Full=50S ribosomal protein L3
gi|195932255|gb|ACG56955.1| ribosomal protein L3 [Hydrogenobaculum sp. Y04AAS1]
Length = 232
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 14/167 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLIGK +G +++ +G T ++V N+++ YI E +
Sbjct: 3 GLIGKKLGMMRVFLNDGTAIPVTAIKVEPNYVV-YIKSSE------------TDGYNAIQ 49
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
VG+ S + K G FK + + P K L F + + G L F P E +D+
Sbjct: 50 VGSIPLKQSRFKKPMVGHFKKANLTPLKYLKEFRVDDVSSFALGQELGVDIFSPGELVDI 109
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
G + RGF G MKRW F G P +HG + HR G + + RV+
Sbjct: 110 VGRSKGRGFTGTMKRWDFGGFPKSHG-HRYHRAVGSVGNRTDPGRVW 155
>gi|379707019|ref|YP_005262224.1| 50S ribosomal protein L3 [Nocardia cyriacigeorgica GUH-2]
gi|374844518|emb|CCF61580.1| 50S ribosomal protein L3 [Nocardia cyriacigeorgica GUH-2]
Length = 221
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 50/103 (48%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP K G F +GV P++ + + + G L+A F F+DV G +
Sbjct: 64 DPRKVNKPVSGQFAKAGVTPRRHIAEIRVADASSFEVGQELSADVFEEGTFVDVTGTSKG 123
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GF G MKR GF+G A+HG HRR G I A RV+ G
Sbjct: 124 KGFAGTMKRHGFRGQGASHGAQAVHRRPGSIGGCATPGRVFKG 166
>gi|159485314|ref|XP_001700690.1| plastid ribosomal protein L3 [Chlamydomonas reinhardtii]
gi|158272032|gb|EDO97839.1| plastid ribosomal protein L3 [Chlamydomonas reinhardtii]
Length = 259
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 17/176 (9%)
Query: 116 KRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLG 175
K G++G G + ++G T++ + + +++ + ++
Sbjct: 42 KAMGVLGTKAGMMSYFTEDGLCVPATVIALEEGNVVTQVKTQDTDG------------YN 89
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLP---PGTPL-TAAHFR 231
+ +G ++ TK G K +GVPP + L F + A + PG L AA +
Sbjct: 90 AVQIGYKATAEKRVTKPELGHLKKAGVPPMRHLVEFKLKDRAAVEAYQPGQALDVAALLK 149
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
E +D+ G+TV +GFQG +KRW K +HG +KSHR G I S +RV+PG
Sbjct: 150 EGEPVDIAGITVGKGFQGTIKRWHHKRGAMSHG-SKSHREHGSIGSATTPSRVFPG 204
>gi|392406845|ref|YP_006443453.1| 50S ribosomal protein L3 [Anaerobaculum mobile DSM 13181]
gi|390619981|gb|AFM21128.1| 50S ribosomal protein L3, bacterial [Anaerobaculum mobile DSM
13181]
Length = 209
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
G++G +G ++ G T+V+ ++ PE K L+
Sbjct: 4 GILGLKVGMTQIYDDQGIAIPVTVVEAGPCTVVALRRPE-------------IEKYTALV 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+G PS K G+FK++GV PK+ L F + A G + + F E +DV
Sbjct: 51 LGFGKVKPSRLNKPLQGVFKSAGVEPKRWLREFRVDDVAGFEVGQTIDVSIFEVGEVVDV 110
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +G+ GVMKR GF G PA+HG + HRR G + + + V+ G
Sbjct: 111 TGTSKGKGYAGVMKRHGFGGGPASHGASLFHRRSGSSGANSFPSHVFKG 159
>gi|339319340|ref|YP_004679035.1| 50S ribosomal protein L3 [Candidatus Midichloria mitochondrii
IricVA]
gi|338225465|gb|AEI88349.1| ribosomal protein L3 [Candidatus Midichloria mitochondrii IricVA]
gi|374671984|emb|CBJ36190.1| 50S ribosomal protein L3 [Candidatus Midichloria mitochondrii]
Length = 226
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 13/172 (7%)
Query: 116 KRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLG 175
KR G I K +G L++++G T+++ +N ++ + + +
Sbjct: 3 KRCGAIVKKLGMSQLFIEDGRSLPVTILEFQNNVVL-------------GSKNKDRHGYD 49
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREF 235
+++G + TK G+ +GV + + F ++ D ++ G L+ HF ++
Sbjct: 50 AVIMGYGKAKLNKITKPMKGILAKAGVESVRGVKEFRVSSDCLIELGKVLSINHFVKGQY 109
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV ++ +GF G MKR F G+ A+HGV+ SHR G + +V+ G
Sbjct: 110 IDVTADSIGKGFAGAMKRHNFAGLEASHGVSVSHRSHGSTGNRTDPGKVFKG 161
>gi|323357372|ref|YP_004223768.1| 50S ribosomal protein L3 [Microbacterium testaceum StLB037]
gi|323273743|dbj|BAJ73888.1| ribosomal protein L3 [Microbacterium testaceum StLB037]
Length = 219
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 14/170 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G +G +W +NG+ T+++V N + + E+ N +
Sbjct: 11 GLLGTKLGMTQVWDENGKLVPVTVIEVAPNVVTQLRSLEKDGYN-------------AVQ 57
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTA-AHFRPREFLD 237
+G DP K F +GV P++ L A G LT F + +D
Sbjct: 58 IGYGQIDPRKVNKPLTAHFDAAGVTPRRHLTEVRTADAADYTLGQELTVDGLFEAGQLVD 117
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G + +G GVMKR FKG+ A+HG ++HR+ G I + + +RV+ G
Sbjct: 118 VVGTSKGKGTAGVMKRHNFKGVSASHGAHRNHRKPGSIGASSTPSRVFKG 167
>gi|302415769|ref|XP_003005716.1| mitochondrial 54S ribosomal protein YmL9 [Verticillium albo-atrum
VaMs.102]
gi|261355132|gb|EEY17560.1| 54S ribosomal protein L9 [Verticillium albo-atrum VaMs.102]
Length = 337
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIIT-PDAMLPPGTPLTAAHFRPRE 234
+ VG +P T+ G F+ GV PK+ + F + D +LP G L F+ +
Sbjct: 126 AVQVGLGQKEPRNVTRPLLGYFEARGVFPKRHIAEFRVKGEDGLLPVGAQLRPDWFQKGQ 185
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK-ARVYPG 287
++DVR + +GF G MKR GF G PA+HG +K+HR G G +RV PG
Sbjct: 186 YVDVRSNSRGQGFAGGMKRHGFAGQPASHGNSKNHRTMGTAGPSQGSGSRVLPG 239
>gi|167752385|ref|ZP_02424512.1| hypothetical protein ALIPUT_00629 [Alistipes putredinis DSM 17216]
gi|167660626|gb|EDS04756.1| 50S ribosomal protein L3 [Alistipes putredinis DSM 17216]
Length = 204
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 26/176 (14%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQ----VVDNHIIKYIPPEEFKPNRKPYRGEP-KR 172
+GLIGK IG ++ G+ T+++ VV I+ + + ++ + Y + K
Sbjct: 2 SGLIGKKIGMTSVYSAEGKNIPCTVIEAGPCVVTQ--IRTVEKDSYEAVQIAYDDKSEKH 59
Query: 173 KLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRP 232
G LL G FK +G PK+K+ F P+ L G LT F
Sbjct: 60 TTGSLL----------------GHFKKAGTTPKRKMAEFKDMPEVNL--GDTLTVDMFSE 101
Query: 233 REFLDVRGLTVDRGFQGVMKRWGFKGMPA-THGVTKSHRRGGCIASGAGKARVYPG 287
+++DV G++ +GFQGV+KR GF G+ THG R+ G + + + +RV+PG
Sbjct: 102 EDWVDVTGISKGKGFQGVVKRHGFGGVGGQTHGQHNRQRKPGSLGASSYPSRVFPG 157
>gi|346973765|gb|EGY17217.1| 54S ribosomal protein L9 [Verticillium dahliae VdLs.17]
Length = 337
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIIT-PDAMLPPGTPLTAAHFRPRE 234
+ VG +P T+ G F+ GV PK+ + F + D +LP G L F+ +
Sbjct: 126 AVQVGLGQKEPRNVTRPLLGYFEARGVFPKRHIAEFRVKGEDGLLPVGAQLRPDWFQKGQ 185
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK-ARVYPG 287
++DVR + +GF G MKR GF G PA+HG +K+HR G G +RV PG
Sbjct: 186 YVDVRSNSRGQGFAGGMKRHGFAGQPASHGNSKNHRTMGTAGPSQGSGSRVLPG 239
>gi|72387453|ref|XP_844151.1| ribosomal protein L3 mitochondrial [Trypanosoma brucei TREU927]
gi|62360659|gb|AAX81070.1| ribosomal protein L3 mitochondrial, putative [Trypanosoma brucei]
gi|70800683|gb|AAZ10592.1| ribosomal protein L3 mitochondrial, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261327312|emb|CBH10288.1| ribosomal protein L3 mitochondrial, putative [Trypanosoma brucei
gambiense DAL972]
Length = 473
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 77/173 (44%), Gaps = 13/173 (7%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
S R G++G + + G + T DN ++K+ R G K +
Sbjct: 135 SVRFGMVGVKAFTCKDYDELGNQFDCTAFWFPDNQVVKH-------STRNGEVGTDKVYV 187
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
G + V E P + +K +GVP K F ITPDA P GT L HF+P +
Sbjct: 188 GAMNVPVEFHKPHV-----AAFYKAAGVPVKHVCAGFPITPDAYAPVGTKLDVRHFKPGQ 242
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ + D GF+GVM R GF G G ++ RR G + + G+ R+YPG
Sbjct: 243 EVTITFQNTDYGFRGVMFRHGFDGGYVWLGDSRWQRRPGAMGT-EGQKRIYPG 294
>gi|94500993|ref|ZP_01307518.1| 50S ribosomal protein L3 [Bermanella marisrubri]
gi|94426933|gb|EAT11916.1| 50S ribosomal protein L3 [Oceanobacter sp. RED65]
Length = 212
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 70/169 (41%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+GK G ++ ++G T+++V N + + E N +
Sbjct: 4 GLVGKKAGMTRVFTEDGASVPVTVIEVTPNRVTQVKTTETDGYN-------------AVQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
V A S S +K G F + V L F I A G LT F + +DV
Sbjct: 51 VTAGSRKASRVSKAEAGHFAKANVEAGDSLLEFRIEEVADFNIGDELTVERFEAGQVVDV 110
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +GFQG +KRW F ATHG + SHR G I RV+ G
Sbjct: 111 TGTSKGKGFQGGVKRWNFSTQDATHGNSLSHRAPGSIGQCQTPGRVWKG 159
>gi|262203624|ref|YP_003274832.1| 50S ribosomal protein L3 [Gordonia bronchialis DSM 43247]
gi|262086971|gb|ACY22939.1| 50S ribosomal protein L3 [Gordonia bronchialis DSM 43247]
Length = 219
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
++ S G++G +G ++ +N T++Q N I + +R Y
Sbjct: 1 MSNQSATKGILGTKLGMTQVFDENNRVVPVTVIQAGPNVITQL-----RTADRDGYTAVQ 55
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
L GA DP TK G + +GV P++ L + + G LTA F
Sbjct: 56 ------LAYGAI--DPRKVTKPVAGQYSKAGVTPRRHLAEIRVNDVSEFEVGQELTAEVF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G + +GF GVMKR GF G+ A+HG + HR G I A RV+ G
Sbjct: 108 AEGSLVDVTGTSKGKGFAGVMKRHGFSGLGASHGAHRVHRAPGSIGGCATPGRVFKG 164
>gi|255943633|ref|XP_002562584.1| Pc20g00200 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587319|emb|CAP85349.1| Pc20g00200 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 296
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 100/218 (45%), Gaps = 31/218 (14%)
Query: 88 PAVKSGIETYNTP----LKIEPLQPLEITTSSK-----------RTGLIGKIIGQYPLWM 132
P GI + N P I P P+ +TS+ RTG IG G ++
Sbjct: 25 PVRSFGIRSLNPPKPSRFNIGPGLPVLESTSTAALRRKANSLPLRTGAIGIKKGMTAIYD 84
Query: 133 -KNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTK 191
++G++ T++Q+ +I + E R Y + VGA PS TK
Sbjct: 85 PESGKRIPCTVLQLDRVEVISHKTRE-----RHGYY--------AVQVGAGWKHPSNVTK 131
Query: 192 EYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGV 250
G F +G+ PK+ + F + +A ++P G + A F+ +F+D R T +GF GV
Sbjct: 132 SMLGHFSVNGISPKRHIFEFRVKDEAGLIPVGQSIEAGWFQEGQFVDARSNTKGKGFAGV 191
Query: 251 MKRWGFKGMPATHGVTKSHR-RGGCIASGAGKARVYPG 287
MKR GF G +HGV+ +HR G G +RVYPG
Sbjct: 192 MKRHGFGGQDRSHGVSLTHRSMGSSGPGQGGGSRVYPG 229
>gi|227494545|ref|ZP_03924861.1| ribosomal protein L3 [Actinomyces coleocanis DSM 15436]
gi|226832279|gb|EEH64662.1| ribosomal protein L3 [Actinomyces coleocanis DSM 15436]
Length = 221
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 13/168 (7%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
L+G+ +G +W +G T+VQV N ++ + EE G ++G V
Sbjct: 15 LLGRKLGMTQVWDNDGRVVPVTVVQVGTN-VVTQVRTEEVD-------GYTAAQIGFGEV 66
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
D TK G F+ +GV P++ L + G L A+ F + +DV
Sbjct: 67 -----DARRITKPLAGHFEKAGVAPRRHLVEVRTSDVDAFELGQELLASVFEAGDKVDVS 121
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +GF G MKR GF+G PA+HG ++HR+ G I + A RV+ G
Sbjct: 122 GKSKGKGFAGAMKRHGFRGAPASHGAHRNHRKPGSIGACATPGRVFKG 169
>gi|377569369|ref|ZP_09798534.1| 50S ribosomal protein L3 [Gordonia terrae NBRC 100016]
gi|377533422|dbj|GAB43699.1| 50S ribosomal protein L3 [Gordonia terrae NBRC 100016]
Length = 218
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
++ S G++G +G ++ +N T++Q N I + +R Y
Sbjct: 1 MSNQSSTKGILGTKLGMTQVFDENNRVVPVTVIQAGPNVITQL-----RSADRDGYTAVQ 55
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
L GA DP TK G + +GV P++ L + + G LTA F
Sbjct: 56 ------LAYGAI--DPRKVTKPVAGQYSKAGVTPRRHLAEIRVNDISEFEVGQELTAEIF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G + +GF GVMKR GF G+ A+HG + HR G I A RV+ G
Sbjct: 108 ADGALVDVTGTSKGKGFAGVMKRHGFAGLGASHGAHRVHRAPGSIGGCATPGRVFKG 164
>gi|404216313|ref|YP_006670508.1| Ribosomal protein L3 [Gordonia sp. KTR9]
gi|403647112|gb|AFR50352.1| Ribosomal protein L3 [Gordonia sp. KTR9]
Length = 218
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 13/177 (7%)
Query: 111 ITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
++ S G++G +G ++ +N T++Q N I + +R Y
Sbjct: 1 MSNQSSTKGILGTKLGMTQVFDENNRVVPVTVIQAGPNVITQL-----RSADRDGYTAVQ 55
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHF 230
L GA DP TK G + +GV P++ L + + G LTA F
Sbjct: 56 ------LAYGAI--DPRKVTKPVAGQYSKAGVTPRRHLAEIRVNDISEFEVGQELTAEIF 107
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G + +GF GVMKR GF G+ A+HG + HR G I A RV+ G
Sbjct: 108 ADGALVDVTGTSKGKGFAGVMKRHGFAGLGASHGAHRVHRAPGSIGGCATPGRVFKG 164
>gi|212528688|ref|XP_002144501.1| mitochondrial 54S ribosomal protein YmL9 [Talaromyces marneffei
ATCC 18224]
gi|210073899|gb|EEA27986.1| 50S ribosomal protein L3 [Talaromyces marneffei ATCC 18224]
Length = 300
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPRE 234
+ VGA P TK G F + + PK+ + F + + +L G+ L+A F+ +
Sbjct: 120 AVQVGAGFKKPQRLTKALLGHFSVNEIAPKRYVHEFRVKDQSGLLEIGSTLSANWFQVGQ 179
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIA-SGAGKARVYPG 287
F+D R T +GF GVMKR GF G +HGV+ +HR G S G +RVYPG
Sbjct: 180 FVDARSNTKGKGFAGVMKRHGFHGQDRSHGVSLTHRSMGSAGPSQGGGSRVYPG 233
>gi|386773320|ref|ZP_10095698.1| 50S ribosomal protein L3P [Brachybacterium paraconglomeratum LC44]
Length = 226
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
G++G +G +W +NG+ T+VQ N + ++ + + + + + G
Sbjct: 15 GVLGTKLGMTQVWDENGKLVPVTVVQTGANVVTQVRSVETDGYDAVQIAF--------GQ 66
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ DP +K G F+ +GV P++ L + A G + A+ F + +
Sbjct: 67 I-------DPRKVSKPLKGHFEKAGVTPRRHLVELRTSDAADYSLGQEIDASVFTAGQKV 119
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G + +G GVMKR GF G+ ATHG ++HR+ G I + RV+ G
Sbjct: 120 DVVGTSKGKGTAGVMKRHGFAGVSATHGQHRNHRKPGSIGGASTPGRVFKG 170
>gi|296827944|ref|XP_002851250.1| mitochondrial 54S ribosomal protein YmL9 [Arthroderma otae CBS
113480]
gi|238838804|gb|EEQ28466.1| 54S ribosomal protein L9 [Arthroderma otae CBS 113480]
Length = 303
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 190 TKEYCGLFKNSGVPPKKKLCRFIITPD-AMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQ 248
T+ G F +GV PK + F + + +LP G + A F+ +++DVR + GF
Sbjct: 138 TRPMLGHFSTNGVSPKLYIHEFRVKDETGLLPVGEVINADWFQEGQYVDVRSNSRGMGFA 197
Query: 249 GVMKRWGFKGMPATHGVTKSHRRGGCIA-SGAGKARVYPG 287
G MK+WGF G +HGV+ +HR G A S G +RVYPG
Sbjct: 198 GAMKKWGFHGQDRSHGVSLTHRSLGSTAPSQGGGSRVYPG 237
>gi|227505216|ref|ZP_03935265.1| 50S ribosomal protein L3 [Corynebacterium striatum ATCC 6940]
gi|227198190|gb|EEI78238.1| 50S ribosomal protein L3 [Corynebacterium striatum ATCC 6940]
Length = 218
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 51/103 (49%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP K G FK +GV P++ + + + G +TA F F+DV G T
Sbjct: 61 DPRKANKPAAGHFKKAGVTPRRHVAEIRMDDTSAYEVGQEVTADIFEGITFVDVTGTTKG 120
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G+ G MKR GF G A HG +HRR G I + A ARV+ G
Sbjct: 121 HGYAGAMKRHGFAGQGAAHGNQAAHRRVGGIGACATPARVFKG 163
>gi|334564056|ref|ZP_08517047.1| 50S ribosomal protein L3 [Corynebacterium bovis DSM 20582]
Length = 218
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 51/103 (49%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP K G FK +GV P++ + + + G +T F EF+DV G +
Sbjct: 61 DPRKVNKPGSGHFKKAGVTPRRHVTEIRVADASAYEVGQDVTVDIFSDVEFVDVTGTSKG 120
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GF G MKR GF G A HG +HRR G I + A RV+ G
Sbjct: 121 KGFAGAMKRHGFAGQGAAHGNQAAHRRVGGIGACATPGRVFKG 163
>gi|406706352|ref|YP_006756705.1| 50S ribosomal protein L3 [alpha proteobacterium HIMB5]
gi|406652128|gb|AFS47528.1| LSU ribosomal protein L3P [alpha proteobacterium HIMB5]
Length = 236
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 70/168 (41%), Gaps = 13/168 (7%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
LIGK IG + K G+ T++++ +I+ I E KR + +
Sbjct: 6 LIGKKIGMTREFYKTGQLVPVTVLKMEKARVIQVIEEE-------------KRGYKAIQL 52
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
G S TK G F KKKL + + G F+ +F+D +
Sbjct: 53 GYGKIKSSKLTKAMKGFFAKKNTEAKKKLKEYRVAKTEDYKEGNEFGLEIFKDIKFVDTK 112
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
T+ +GF G MKR F G+ ATHGV+ SHR G +V+ G
Sbjct: 113 SKTIGKGFAGAMKRHNFGGLRATHGVSISHRSHGSTGQRQDPGKVFKG 160
>gi|260655383|ref|ZP_05860871.1| 50S ribosomal protein L3 [Jonquetella anthropi E3_33 E1]
gi|424845195|ref|ZP_18269806.1| 50S ribosomal protein L3, bacterial [Jonquetella anthropi DSM
22815]
gi|260629831|gb|EEX48025.1| 50S ribosomal protein L3 [Jonquetella anthropi E3_33 E1]
gi|363986633|gb|EHM13463.1| 50S ribosomal protein L3, bacterial [Jonquetella anthropi DSM
22815]
Length = 207
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
G++G+ +G ++ + G T++ ++ PE K +L
Sbjct: 3 GILGQKVGMTRVYSEEGRAIPVTVIAAGPCPVVDLRTPE-------------KNGYSAVL 49
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+G P +K G FK +GV P + L F + G + + F+ E +DV
Sbjct: 50 LGFSERKPQRVSKPLAGTFKRAGVTPCRWLREFRVADSGKWEIGGTVNVSLFQAGEAVDV 109
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +G GV+KR+GF G PA+HGV+K+HR+ + + +RV+ G
Sbjct: 110 TGTSKGKGTAGVIKRYGFGGAPASHGVSKTHRKPNSSGASSYPSRVFKG 158
>gi|68536923|ref|YP_251628.1| 50S ribosomal protein L3 [Corynebacterium jeikeium K411]
gi|109893423|sp|Q4JT47.1|RL3_CORJK RecName: Full=50S ribosomal protein L3
gi|68264522|emb|CAI38010.1| 50S ribosomal protein L3 [Corynebacterium jeikeium K411]
Length = 218
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 50/103 (48%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP K G FK +GV P++ + + + G +T F +F+DV G T
Sbjct: 61 DPRKVNKPAAGHFKKAGVTPRRHVAEIRVADASSYEVGQDVTVDIFNDVKFVDVTGTTKG 120
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+G+ G MKR GF G A HG +HRR G I A RV+ G
Sbjct: 121 KGYAGGMKRHGFAGQGAAHGNQAAHRRVGSIGQAATPGRVFKG 163
>gi|383455221|ref|YP_005369210.1| 50S ribosomal protein L3 [Corallococcus coralloides DSM 2259]
gi|380734195|gb|AFE10197.1| 50S ribosomal protein L3 [Corallococcus coralloides DSM 2259]
Length = 222
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 71/171 (41%), Gaps = 16/171 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLIGK IG ++ G T++ V ++ PE K + +
Sbjct: 3 GLIGKKIGMTQVFNDEGNLVPVTVIDVNTCLVVGKRTPE-------------KDQYSAVT 49
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD--AMLPPGTPLTAAHFRPREFL 236
VG L K G FK + P++ L F +T + A G + A F E +
Sbjct: 50 VGFGEIREKLLNKPELGFFKKASATPRRHLREFRVTAEEAAGFNVGDAVKADMFTKGELV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKG-MPATHGVTKSHRRGGCIASGAGKARVYP 286
DV G+T RGF GVM+RW FKG THG + R G I R YP
Sbjct: 110 DVTGVTKGRGFSGVMRRWSFKGSQTKTHGTHEYQRHPGAIGQRKTPGRTYP 160
>gi|365174457|ref|ZP_09361905.1| 50S ribosomal protein L3 [Synergistes sp. 3_1_syn1]
gi|363615013|gb|EHL66485.1| 50S ribosomal protein L3 [Synergistes sp. 3_1_syn1]
Length = 208
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
G++G+ +G ++ +NG+ T+++ I++ PE K +
Sbjct: 4 GILGRKVGMTQVFDENGKAVPVTVIEAGPCTIVEIRTPE-------------KNSYSAVQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+G P TK G F+ V P++ L F + A G +T + F+ E +DV
Sbjct: 51 LGLGDVKPVKLTKPMKGYFEKQDVAPRRWLREFRVDSTADYQVGQEITVSLFQNGEVVDV 110
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G++ +G GVMKR GF G PA+HG + +HR G I + RV G
Sbjct: 111 IGVSKGKGTAGVMKRHGFGGTPASHGHSVTHRHPGSIGCSSFPGRVMKG 159
>gi|260579267|ref|ZP_05847151.1| 50S ribosomal protein L3 [Corynebacterium jeikeium ATCC 43734]
gi|258602619|gb|EEW15912.1| 50S ribosomal protein L3 [Corynebacterium jeikeium ATCC 43734]
Length = 218
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 50/103 (48%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP K G FK +GV P++ + + + G +T F +F+DV G T
Sbjct: 61 DPRKVNKPAAGHFKKAGVTPRRHVAEIRVADASSYEVGQDVTVDIFNDVKFVDVTGTTKG 120
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+G+ G MKR GF G A HG +HRR G I A RV+ G
Sbjct: 121 KGYAGGMKRHGFAGQGAAHGNQAAHRRVGSIGQAATPGRVFKG 163
>gi|296141115|ref|YP_003648358.1| 50S ribosomal protein L3 [Tsukamurella paurometabola DSM 20162]
gi|296029249|gb|ADG80019.1| 50S ribosomal protein L3 [Tsukamurella paurometabola DSM 20162]
Length = 218
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 13/175 (7%)
Query: 113 TSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKR 172
T +K G++G +G ++ +N T+V+ N + + R E
Sbjct: 2 TENKIKGILGTKLGMTQVFDENNRVVPVTVVKAGPNVVTQI-------------RTEATD 48
Query: 173 KLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRP 232
+ + + DP K G F +GV P++ + I + G L A F
Sbjct: 49 GYDAVQIAFGAIDPRKVNKPVSGQFAKAGVTPRRHIAELRIADTSEYEVGQELGADVFSG 108
Query: 233 REFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
EF+DV G++ +G+ GVMKR GF G+ A+HG HR G I A RV+ G
Sbjct: 109 GEFVDVTGISKGKGYAGVMKRHGFAGLGASHGAQAVHRAPGSIGGCATPGRVFKG 163
>gi|284034002|ref|YP_003383933.1| 50S ribosomal protein L3 [Kribbella flavida DSM 17836]
gi|283813295|gb|ADB35134.1| ribosomal protein L3 [Kribbella flavida DSM 17836]
Length = 218
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 51/103 (49%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP TK G F+ +GV P++ L + G + A F E +DV +
Sbjct: 62 DPRKVTKPLRGHFEKAGVTPRRHLLELRTADASEYTLGQEIKAEAFAAGEVVDVSATSKG 121
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GF GVMKR GF G+ ATHGV K HR G I A RV+ G
Sbjct: 122 KGFAGVMKRHGFHGLRATHGVHKKHRSPGSIGGCATPGRVFKG 164
>gi|242765739|ref|XP_002341035.1| mitochondrial 54S ribosomal protein YmL9 [Talaromyces stipitatus
ATCC 10500]
gi|218724231|gb|EED23648.1| 50S ribosomal protein L3 [Talaromyces stipitatus ATCC 10500]
Length = 300
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 85/182 (46%), Gaps = 16/182 (8%)
Query: 109 LEITTSSKRTGLIGKIIGQYPLWM-KNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYR 167
L+ T RTGL+ G L+ + G++ T++Q+ +I + +
Sbjct: 65 LKANTMPLRTGLLAIKKGMTGLYDPETGKRTPCTVLQLDRCQVISH-------------K 111
Query: 168 GEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITP-DAMLPPGTPLT 226
K + VGA P TK G F + V PK+ + F + + +L G LT
Sbjct: 112 TMDKHGYFAVQVGAGFKKPERLTKALVGHFSVNEVAPKRYVHEFRVKDGNGLLEIGHTLT 171
Query: 227 AAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIA-SGAGKARVY 285
A F+ +++D R T +GF GVMKR GF G +HGV+ +HR G S G +RVY
Sbjct: 172 ADWFQVGQYVDARSNTKGKGFAGVMKRHGFHGQDRSHGVSLTHRSLGSAGPSQGGGSRVY 231
Query: 286 PG 287
PG
Sbjct: 232 PG 233
>gi|390952380|ref|YP_006416139.1| 50S ribosomal protein L3 [Thiocystis violascens DSM 198]
gi|390428949|gb|AFL76014.1| LSU ribosomal protein L3P [Thiocystis violascens DSM 198]
Length = 216
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 15/171 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
G+IG+ G L+ ++GE T+++V N + + E YR +
Sbjct: 4 GVIGRKAGMTRLFQEDGESIPVTVIEVTPNRVSQVKSAET-----DGYR--------AVQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD--AMLPPGTPLTAAHFRPREFL 236
V + S TK G + +GV + L F + D A L G +T + F + +
Sbjct: 51 VAFGTRRASRVTKPMAGHYAKAGVEAGEVLREFRLESDEGADLEVGHEITVSIFETGQKV 110
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DVRG+T RGF G ++R F ATHG ++SHR G I RV+ G
Sbjct: 111 DVRGVTKGRGFTGAIRRHHFSMQDATHGNSRSHRSAGSIGQNQTPGRVWKG 161
>gi|357590059|ref|ZP_09128725.1| 50S ribosomal protein L3 [Corynebacterium nuruki S6-4]
Length = 218
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 51/103 (49%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP K G FK +GV P++ + + + G +TA F F+DV G +
Sbjct: 61 DPRKVKKPQAGHFKKAGVTPRRHVTEIRVEDASAYEVGQEITAETFADAAFVDVTGTSKG 120
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+G+ G MKR GF G A HG +HRR G I + A RV+ G
Sbjct: 121 KGYAGAMKRHGFAGQGAAHGNQAAHRRVGGIGACATPGRVFKG 163
>gi|331699176|ref|YP_004335415.1| 50S ribosomal protein L3 [Pseudonocardia dioxanivorans CB1190]
gi|326953865|gb|AEA27562.1| 50S ribosomal protein L3 [Pseudonocardia dioxanivorans CB1190]
Length = 217
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 77/175 (44%), Gaps = 13/175 (7%)
Query: 113 TSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKR 172
T + TG++GK +G ++ +N T+VQ N ++ I +E G
Sbjct: 2 TDRQITGILGKKLGMTQVFDENNRVVPVTVVQAGPN-VVTQIRSQETD-------GYVAV 53
Query: 173 KLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRP 232
+L V DP K G F +GV P++ T G +TA F P
Sbjct: 54 QLAFGAV-----DPRRVNKPETGHFAKAGVTPRRYTVELRTTDAGEYSLGQEITAEVFEP 108
Query: 233 REFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G + +G+ GVMKR FKG+ A+HG + HR G I A RV+ G
Sbjct: 109 GAVVDVVGTSKGKGYAGVMKRHNFKGLGASHGTQRKHRSPGSIGGCATPGRVFKG 163
>gi|312140918|ref|YP_004008254.1| 50S ribosomal protein l3 rplc [Rhodococcus equi 103S]
gi|325675444|ref|ZP_08155128.1| 50S ribosomal protein L3 [Rhodococcus equi ATCC 33707]
gi|311890257|emb|CBH49575.1| 50S ribosomal protein L3 RplC [Rhodococcus equi 103S]
gi|325553415|gb|EGD23093.1| 50S ribosomal protein L3 [Rhodococcus equi ATCC 33707]
Length = 217
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
G++G +G ++ +N T+V+ N ++ I EE R Y + G +
Sbjct: 7 GILGTKLGMTQVFDENNRVVPVTVVKAGPN-VVTQIRTEE----RDGYS-AVQLAFGAI- 59
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
DP K G F +GV P++ + + + G LTA F ++DV
Sbjct: 60 ------DPRKVNKPTSGQFAKAGVTPRRHVVELRVADTSEYEVGQELTAEVFEDGAYVDV 113
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +GF G MKR GF G A+HG HRR G I A RV+ G
Sbjct: 114 TGTSKGKGFAGTMKRHGFAGQGASHGAQAVHRRPGSIGGCATPGRVFKG 162
>gi|219113447|ref|XP_002186307.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583157|gb|ACI65777.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 229
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHII---KYIPPEEFKPNRKPYRGEPK 171
KR G +G +G PL+ G + T++ +DN+++ K I + + +
Sbjct: 14 DKRCGALGIKVGMMPLFDDWGVRHPCTIL-FLDNNVVLGQKSIEQHGYWAVQIAAGQRKR 72
Query: 172 RKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHF 230
+ +G ++G +Y + ++ P + F ++ A ++P G + A HF
Sbjct: 73 KNVGVSVLG-----------QYKHILEDENENPPYLVREFRVSDGAHLVPVGARIHARHF 121
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
P + +DV G++ +GFQG MKR F GMPA+HGV+KSHR G +V+ G
Sbjct: 122 VPGQNVDVSGISKGKGFQGAMKRHNFGGMPASHGVSKSHRALGSTGQCQDPGKVFKG 178
>gi|403713405|ref|ZP_10939522.1| 50S ribosomal protein L3 [Kineosphaera limosa NBRC 100340]
gi|403212491|dbj|GAB94205.1| 50S ribosomal protein L3 [Kineosphaera limosa NBRC 100340]
Length = 218
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 52/103 (50%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP K G F+ +GV P++ L + G LT F + +DV G T
Sbjct: 64 DPRKVKKPMTGHFEKAGVTPRRHLVELRTSDAGEYSLGQELTVEAFEGGQKVDVAGTTKG 123
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GF GVMKR GF G+ A+HG ++HR+ G I A RVY G
Sbjct: 124 KGFAGVMKRHGFHGVGASHGAHRNHRKPGSIGGCATPGRVYKG 166
>gi|336326439|ref|YP_004606405.1| 50S ribosomal protein L3 [Corynebacterium resistens DSM 45100]
gi|336102421|gb|AEI10241.1| 50S ribosomal protein L3 [Corynebacterium resistens DSM 45100]
Length = 218
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 52/103 (50%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP K G FK +GV P++ + + + G +T F +F+DV G+T
Sbjct: 61 DPRKVNKPAAGHFKKAGVTPRRHVTEIRVEDASAYEVGQDVTVEIFNDVKFVDVTGITKG 120
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G+ G MKR GF G A+HG +HRR G I + A R++ G
Sbjct: 121 HGYAGAMKRHGFAGQGASHGNQAAHRRVGGIGACATPGRIFKG 163
>gi|83648852|ref|YP_437287.1| 50S ribosomal protein L3 [Hahella chejuensis KCTC 2396]
gi|109893432|sp|Q2S912.1|RL3_HAHCH RecName: Full=50S ribosomal protein L3
gi|83636895|gb|ABC32862.1| Ribosomal protein L3 [Hahella chejuensis KCTC 2396]
Length = 212
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 15/171 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G+ G L+ +G T++QV + ++I + E R +
Sbjct: 4 GLVGRKAGMTRLFEDDGAAVPVTVIQV-EKNVIAQVKSLEVDGYR------------AIQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFII--TPDAMLPPGTPLTAAHFRPREFL 236
V + S S K G F +GV + +C F + T A G ++ F + +
Sbjct: 51 VTSGSVKASRVNKPMAGHFAKAGVEAGRVVCEFTLDATDSAEYKVGDEVSVTIFEAGQKV 110
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G + +GF GV+KRW F ATHG + SHR G I RV+ G
Sbjct: 111 DVSGRSKGKGFAGVIKRWNFSTQDATHGNSLSHRAPGSIGQNQSPGRVFKG 161
>gi|74316423|ref|YP_314163.1| 50S ribosomal protein L3P [Thiobacillus denitrificans ATCC 25259]
gi|109893570|sp|Q3SLP9.1|RL3_THIDA RecName: Full=50S ribosomal protein L3
gi|74055918|gb|AAZ96358.1| ribosomal protein L3 [Thiobacillus denitrificans ATCC 25259]
Length = 214
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 15/171 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G+ +G ++ +NG T++++ +N + + PE +
Sbjct: 4 GLVGRKVGMTRIFTENGASVPVTVLEMSNNRVTQVRTPEN-------------DGYSAVQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD--AMLPPGTPLTAAHFRPREFL 236
V S S K G + +GV + L F + D A PG ++ F+ + +
Sbjct: 51 VAYGSRRNSRVNKSEAGHYAKAGVDAGELLREFRVAADVAAQYQPGAAVSVEVFQAGQKV 110
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G+T +GF G +KR FK A+HG ++SH G I RV+PG
Sbjct: 111 DVTGVTQGKGFAGTIKRHNFKSQRASHGNSRSHNVPGSIGMAQDPGRVFPG 161
>gi|295394348|ref|ZP_06804573.1| 50S ribosomal protein L3 [Brevibacterium mcbrellneri ATCC 49030]
gi|294972806|gb|EFG48656.1| 50S ribosomal protein L3 [Brevibacterium mcbrellneri ATCC 49030]
Length = 224
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 71/169 (42%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G +G +W +N T++ N ++ I EE +
Sbjct: 17 GLMGTKLGMTQVWDENNNLVPVTVISASSN-VVTQIRNEEVDG------------YSAVQ 63
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+G DP K G F+ +GV P++ L G L+ F +DV
Sbjct: 64 IGYGEIDPRKVNKPAKGHFEKAGVAPRRHLVELRTADAGEYELGQELSTEVFEAGIKVDV 123
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
T +GF GVMKR GF G+ A+HG ++HR+ G I A RV+ G
Sbjct: 124 TANTKGKGFAGVMKRHGFAGVGASHGQHRNHRKPGSIGGAATPGRVFKG 172
>gi|220935492|ref|YP_002514391.1| 50S ribosomal protein L3 [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|254803700|sp|B8GV58.1|RL3_THISH RecName: Full=50S ribosomal protein L3
gi|219996802|gb|ACL73404.1| ribosomal protein L3 [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 214
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 15/171 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G+ +G ++ ++G T+++V N + + + EE R YR L
Sbjct: 4 GLVGRKLGMTRVFTEDGASLPVTVIEVDPNRVTQ-VKTEE----RDGYR--------ALQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD--AMLPPGTPLTAAHFRPREFL 236
V + S TK G F +GV + L F + D A + G L F + +
Sbjct: 51 VTTGARKASRVTKPRAGHFAKAGVEAGRGLWEFRLDGDQGAEIETGAELKVDIFEAGQIV 110
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G++ +GFQGV+KR F ATHG + SHR G I RV+ G
Sbjct: 111 DVTGISKGKGFQGVIKRHNFSMQDATHGNSLSHRAPGSIGQNQTPGRVFKG 161
>gi|340795349|ref|YP_004760812.1| 50S ribosomal protein L3 [Corynebacterium variabile DSM 44702]
gi|340535259|gb|AEK37739.1| 50S ribosomal protein L3 [Corynebacterium variabile DSM 44702]
Length = 218
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 52/103 (50%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP K G FK +GV P++ + + + G +TA F F+DV G +
Sbjct: 61 DPRKVKKPQAGHFKKAGVTPRRHVTEIRVEDASAYEVGQDITAELFADVTFVDVTGTSKG 120
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+G+ G MKR GF G A+HG +HRR G I + A RV+ G
Sbjct: 121 KGYAGAMKRHGFAGQGASHGNQAAHRRVGGIGACATPGRVFKG 163
>gi|357028809|ref|ZP_09090834.1| 50S ribosomal protein L3 [Mesorhizobium amorphae CCNWGS0123]
gi|355537509|gb|EHH06765.1| 50S ribosomal protein L3 [Mesorhizobium amorphae CCNWGS0123]
Length = 231
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 51/98 (52%)
Query: 190 TKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQG 249
+K G F + V PK K+ F ++ D M+ G +T HF + +DV G T+ +GFQG
Sbjct: 51 SKAMRGHFATASVEPKAKVAEFRVSADNMIDVGAEITVEHFVVGQKVDVTGTTIGKGFQG 110
Query: 250 VMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V+KR G ATHG + SHR G +V+ G
Sbjct: 111 VIKRHHMGGGRATHGNSVSHRTHGSTGQRQDPGKVFKG 148
>gi|269122581|ref|YP_003310758.1| 50S ribosomal protein L3 [Sebaldella termitidis ATCC 33386]
gi|268616459|gb|ACZ10827.1| ribosomal protein L3 [Sebaldella termitidis ATCC 33386]
Length = 208
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 120 LIGKIIGQYPLWMKNGEKCR-TTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
L+GK IG ++ GEK T+++ N +I+ E K L
Sbjct: 2 LLGKKIGMTQIF--EGEKLIPVTVIEAGPNFVIQKKNVE-------------KDGYNALT 46
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+G + K G+FK +GV PKK L F G + F EF+DV
Sbjct: 47 LGYDEKKEKNTIKPEMGVFKKAGVTPKKFLKEFRTDNLDSYELGQEIKVDSFEGIEFVDV 106
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGG 288
G + +G GVMKR F G ATHGV+++HR GG A GA P G
Sbjct: 107 SGTSKGKGTAGVMKRHNFGGNRATHGVSRNHRLGGSNAGGAASNSNVPKG 156
>gi|269122979|ref|YP_003305556.1| 50S ribosomal protein L3 [Streptobacillus moniliformis DSM 12112]
gi|268314305|gb|ACZ00679.1| ribosomal protein L3 [Streptobacillus moniliformis DSM 12112]
Length = 208
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 51/101 (50%)
Query: 188 LYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGF 247
L K G+FK +G+ KK L F + G L EF+D++G++ +G
Sbjct: 56 LVNKPEMGVFKKAGITAKKFLKEFKVESVEEFALGQELKVDVLEGIEFVDIQGISKGKGT 115
Query: 248 QGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGG 288
GVMKR F G ATHGV+++HR GG A GA P G
Sbjct: 116 AGVMKRHNFGGNRATHGVSRNHRLGGSNAGGAASNSNVPKG 156
>gi|359764679|ref|ZP_09268523.1| 50S ribosomal protein L3 [Gordonia polyisoprenivorans NBRC 16320]
gi|378719099|ref|YP_005283988.1| 50S ribosomal protein L3 [Gordonia polyisoprenivorans VH2]
gi|359318047|dbj|GAB21356.1| 50S ribosomal protein L3 [Gordonia polyisoprenivorans NBRC 16320]
gi|375753802|gb|AFA74622.1| 50S ribosomal protein L3 [Gordonia polyisoprenivorans VH2]
Length = 219
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 51/103 (49%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP TK G F +GV P++ L + + L G LTA F +DV G +
Sbjct: 62 DPRKVTKPVAGQFSKAGVTPRRHLAEIRVADVSELEVGQELTAEIFADGALVDVTGTSKG 121
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GF G MKR GF G+ A+HG + HR G I A RV+ G
Sbjct: 122 KGFAGPMKRHGFSGLGASHGAHRVHRAPGSIGGCATPGRVFKG 164
>gi|359773383|ref|ZP_09276780.1| 50S ribosomal protein L3 [Gordonia effusa NBRC 100432]
gi|359309508|dbj|GAB19558.1| 50S ribosomal protein L3 [Gordonia effusa NBRC 100432]
Length = 217
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 50/103 (48%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP K G F +GV P++ + + A G LTA F +DV G +
Sbjct: 61 DPRKVIKPVAGQFAKAGVTPRRHVAEIRVNDAAEFEVGQELTAEIFADGALVDVTGTSKG 120
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GF GVMKR GF G+ A+HG + HR G I A RV+ G
Sbjct: 121 KGFAGVMKRHGFAGLGASHGAHRVHRAPGSIGGCATPGRVFKG 163
>gi|347828582|emb|CCD44279.1| hypothetical protein [Botryotinia fuckeliana]
Length = 312
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPRE 234
+ VGA PS T+ G ++ S V PK+ + F + ++ +L G + A F +
Sbjct: 122 AVQVGAGWKHPSNVTRPELGHYEKSQVAPKRYMAEFRVKNESGLLDVGRSIGAEWFIEGQ 181
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK-ARVYPG 287
F+D R + GF G MK+WG+ G PA+HG +K+HR G + G +RV+PG
Sbjct: 182 FVDARANSRGMGFAGGMKKWGWSGQPASHGNSKNHRTMGSAGASQGSGSRVHPG 235
>gi|392414829|ref|YP_006451434.1| LSU ribosomal protein L3P [Mycobacterium chubuense NBB4]
gi|390614605|gb|AFM15755.1| LSU ribosomal protein L3P [Mycobacterium chubuense NBB4]
Length = 226
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 80/179 (44%), Gaps = 16/179 (8%)
Query: 112 TTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPK 171
++++ R G++G +G ++ +N + T+V+ N + + PE R Y
Sbjct: 6 SSAAPRRGILGTKLGMTQVFDENNKVVPVTVVKAGPNVVTRIRTPE-----RDGYSAVQ- 59
Query: 172 RKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPP---GTPLTAA 228
L G S P K G + +GV P++ L + +A G LTA
Sbjct: 60 -----LAYGEIS--PRKVNKPLAGQYAAAGVNPRRHLAELRLDDEAAAAEYEVGQELTAE 112
Query: 229 HFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F F+DV G + +GF G MKR GF+G A+HG HRR G I A RV+ G
Sbjct: 113 IFADGAFVDVTGTSKGKGFAGTMKRHGFRGQGASHGAQAVHRRPGSIGGCATPGRVFKG 171
>gi|225011647|ref|ZP_03702085.1| ribosomal protein L3 [Flavobacteria bacterium MS024-2A]
gi|225004150|gb|EEG42122.1| ribosomal protein L3 [Flavobacteria bacterium MS024-2A]
Length = 205
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 23/175 (13%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQ----VVDNHIIKYIPPEEFKPNRKPYRGEPKRK 173
+GLIGK IG L+ + G+ T+++ VV ++ + ++ + + + ++K
Sbjct: 2 SGLIGKKIGMTSLFDEKGKNIPCTVLELGPCVVTQ--VRTTAVDGYEALQLGFDDKAEKK 59
Query: 174 LGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPR 233
+ TK G FK + PKKKL F + L G +T HF
Sbjct: 60 V---------------TKAAAGHFKKANSVPKKKLVEFQ-NFEEELNLGDTITVEHFNEG 103
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGM-PATHGVTKSHRRGGCIASGAGKARVYPG 287
EF+DV G + +GFQGV+KR GF G+ ATHG R G I + + ARV+ G
Sbjct: 104 EFVDVSGTSKGKGFQGVVKRHGFAGVGQATHGQHNRLRAPGSIGAASYPARVFKG 158
>gi|387128166|ref|YP_006296771.1| 50S ribosomal protein L3 [Methylophaga sp. JAM1]
gi|386275228|gb|AFI85126.1| LSU ribosomal protein L3p (L3e) [Methylophaga sp. JAM1]
Length = 210
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 17/171 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
GLIG+ G ++ ++G T+++V N I +K + + + + GE K
Sbjct: 4 GLIGRKRGMTRIFSEDGVSTPVTVIEVEPNRISQMKSVDTDGYNAIQVTV-GERK----- 57
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
S TK G F + +K+C F + L G + F + +
Sbjct: 58 ---------ASRVTKPQAGHFAKAQAAAGRKVCEFRVDSHDDLAVGAEIKVDIFEAGQKI 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV GLT +GF GV+KR+GF+G ATHG + SHR G I RV+ G
Sbjct: 109 DVSGLTKGKGFAGVVKRYGFRGGDATHGNSLSHRAPGSIGQCQTPGRVFKG 159
>gi|340053045|emb|CCC47331.1| putative mitochondrial ribosomal protein L3 [Trypanosoma vivax
Y486]
Length = 473
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 13/173 (7%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
S R G++G + + G + T DN ++K+ R+ G K +
Sbjct: 135 SVRFGMVGVKAFTCKDYDELGNQFDCTAFWFPDNQVVKH-------GTRRGDVGTDKVYI 187
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
G + V E P + +K +GVP K F ITPDA P GT + HF+P +
Sbjct: 188 GAMNVPVEFHKPHV-----TAFYKAAGVPVKHVCAGFRITPDAYAPVGTKIDVRHFKPGQ 242
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ + D GF+GVM R GF G G +K RR G + + G+ R++PG
Sbjct: 243 EVTISFQNTDYGFRGVMFRHGFDGGYVWLGDSKWQRRPGAMGA-EGQKRIFPG 294
>gi|91763160|ref|ZP_01265124.1| 50S ribosomal protein L3 [Candidatus Pelagibacter ubique HTCC1002]
gi|91717573|gb|EAS84224.1| 50S ribosomal protein L3 [Candidatus Pelagibacter ubique HTCC1002]
Length = 236
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 71/168 (42%), Gaps = 13/168 (7%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
L+GK IG + K G T++++ +I+ I E+ RG +LG +
Sbjct: 6 LVGKKIGMTREFYKTGRLVPVTVIKMEKARVIQVIEEEK--------RGYKAVQLGFGKI 57
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
A S TK G + KKKL F + + G F +F+D
Sbjct: 58 KA-----SKLTKAMKGFYAKKNTEAKKKLKEFRVKDTELYKEGNEFGLEIFNEVKFVDTT 112
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
T+ +GF G MKR F G+ ATHGV+ SHR G +V+ G
Sbjct: 113 SKTIGKGFAGAMKRHNFGGLRATHGVSVSHRSHGSTGQRQDPGKVFKG 160
>gi|2344833|emb|CAB11435.1| ribosomal protein L3 [Mycobacterium leprae]
Length = 217
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 20/176 (11%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKL 174
R G++G +G ++ +N T+V+ N + I+ + P+ + + Y GE
Sbjct: 3 RKGILGTKLGMTQVFDENNRVVPVTVVKAGPNVVTRIRTLEPDGYSAVQLAY-GEI---- 57
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIIT-PDAMLP--PGTPLTAAHFR 231
P K G + ++GV P++ L + PDA G LTA F
Sbjct: 58 ----------SPRKVNKPVTGQYNSAGVNPRRYLAELRLDHPDAAAEYEVGQELTAEIFA 107
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
++DV G + +GF G MKR GF+G A+HG HRR G I A ARV+ G
Sbjct: 108 DATYVDVTGTSKGKGFSGTMKRHGFRGQGASHGAQAVHRRPGSIGGCATPARVFKG 163
>gi|420151468|ref|ZP_14658575.1| 50S ribosomal protein L3 [Actinomyces massiliensis F0489]
gi|394766787|gb|EJF47778.1| 50S ribosomal protein L3 [Actinomyces massiliensis F0489]
Length = 222
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 21/170 (12%)
Query: 122 GKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
G +G +W + G T+V+V N + I+ + + ++ + + +RK+
Sbjct: 18 GTKLGMTQIWDEGGRLRPVTVVRVDTNVVTQIRTVENDGYEAVQLAFGEIDERKV----- 72
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLC--RFIITPDAMLPPGTPLTAAHFRPREFLD 237
TK G F +GV P++ + R +T D L G LTA F + +D
Sbjct: 73 ----------TKPLKGHFDKAGVAPRRHVAEVRTSLTDDFTL--GQELTADTFEVGQLVD 120
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G + +GF GVMKR GFKG+ A+HG ++HR+ G + + A R++ G
Sbjct: 121 VTGTSKGKGFAGVMKRHGFKGVGASHGAHRNHRKPGSVGACATPGRIFKG 170
>gi|312795774|ref|YP_004028696.1| 50S ribosomal protein L3 [Burkholderia rhizoxinica HKI 454]
gi|312167549|emb|CBW74552.1| LSU ribosomal protein L3P [Burkholderia rhizoxinica HKI 454]
Length = 247
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 85/189 (44%), Gaps = 19/189 (10%)
Query: 103 IEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFK 160
I P Q + GL+G+ +G ++ +G+ T++ V DN + IK + + +
Sbjct: 17 ISPDQSQSGMEKTMSLGLVGRKVGMTRIFTADGDSIPVTVLDVSDNRVTQIKTVETDGYT 76
Query: 161 PNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD--AM 218
+ + GE + S TK G +GV + L F I D A
Sbjct: 77 AVQVAF-GERR--------------ASRVTKPLAGHLAKAGVQAGEILKEFRIEADKAAE 121
Query: 219 LPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASG 278
L PG+ + F + +DV+G+++ +G+ G +KR+ F A+HG ++SH G I
Sbjct: 122 LSPGSVVGVDLFEVGQKVDVQGVSIGKGYAGTIKRYNFGSGRASHGNSRSHNVPGSIGMA 181
Query: 279 AGKARVYPG 287
RV+PG
Sbjct: 182 QDPGRVFPG 190
>gi|399022129|ref|ZP_10724208.1| 50S ribosomal protein L3, bacterial [Chryseobacterium sp. CF314]
gi|398085496|gb|EJL76154.1| 50S ribosomal protein L3, bacterial [Chryseobacterium sp. CF314]
Length = 208
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 18/173 (10%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLG 175
+G+IGK IG L+ + G+ T++Q + ++ I + +K + + + ++ +G
Sbjct: 2 SGIIGKKIGMTSLFNEEGKNIPCTVIQAGPCSVLQVRTIEKDGYKSVQLGFDDKSEKNVG 61
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREF 235
K G FK +G PK KL F + G + F E+
Sbjct: 62 ---------------KALAGHFKKAGSAPKAKLVEFYREFVDEVKVGEEVKVDLFAEGEY 106
Query: 236 LDVRGLTVDRGFQGVMKRWGFKG-MPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G + +GFQGV+KR GF G M ATHG R G I +G+ +RV+ G
Sbjct: 107 VDVTGTSKGKGFQGVVKRHGFGGVMQATHGQHNRLRAPGSIGAGSDPSRVFKG 159
>gi|156312295|ref|XP_001617804.1| hypothetical protein NEMVEDRAFT_v1g225779 [Nematostella vectensis]
gi|156195878|gb|EDO25704.1| predicted protein [Nematostella vectensis]
Length = 205
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 15/171 (8%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
+GLIG+ IG L+ +NG+ T+++ ++ + EE L
Sbjct: 2 SGLIGRKIGMTSLFDENGKNIPCTVIEA-GPCVVTQVRTEEVDG------------YNAL 48
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
+G + K G FK +G K+K+ F + G +T HF EF+D
Sbjct: 49 QLGFDDKKAKSSNKALDGHFKKAGATAKRKVVEFQGFEEE-YKLGDSITVEHFEEGEFVD 107
Query: 238 VRGLTVDRGFQGVMKRWGFKGM-PATHGVTKSHRRGGCIASGAGKARVYPG 287
V G++ +GFQGV+KR GF G+ ATHG R G I + + ARV+ G
Sbjct: 108 VSGISKGKGFQGVVKRHGFGGVGQATHGQHNRLRAPGSIGAASYPARVFKG 158
>gi|386857798|ref|YP_006261975.1| 50S ribosomal protein L3 [Deinococcus gobiensis I-0]
gi|380001327|gb|AFD26517.1| 50S ribosomal protein L3 [Deinococcus gobiensis I-0]
Length = 206
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 194 CGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKR 253
G FK +GV P RF+ P G + F E +D G + +GFQGVMKR
Sbjct: 64 MGHFKKAGVSP----VRFLREFRGFAPEGDTVNVDIFAEGEKIDATGTSKGKGFQGVMKR 119
Query: 254 WGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
W FKG PA+HG K HRR G I RVY G
Sbjct: 120 WNFKGGPASHGSKKWHRRPGSIGQRKTPGRVYKG 153
>gi|256390140|ref|YP_003111704.1| 50S ribosomal protein L3 [Catenulispora acidiphila DSM 44928]
gi|256356366|gb|ACU69863.1| ribosomal protein L3 [Catenulispora acidiphila DSM 44928]
Length = 215
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 51/102 (50%)
Query: 186 PSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDR 245
P+ TK G F +GV P++ T A G +TA F + +DV G +
Sbjct: 61 PTKVTKPEAGHFAKAGVTPRRYTVEIRTTDAAEYSLGQEITAETFTQGQIVDVSGTSKGH 120
Query: 246 GFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GF GVMKR FKG+ A HGV + HR G I + A RV+ G
Sbjct: 121 GFAGVMKRHNFKGLGAGHGVQRKHRSPGSIGACATPGRVFKG 162
>gi|389623331|ref|XP_003709319.1| 50S ribosomal protein L3 [Magnaporthe oryzae 70-15]
gi|351648848|gb|EHA56707.1| 50S ribosomal protein L3 [Magnaporthe oryzae 70-15]
Length = 388
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFII-TPDAMLPPGTPLTAAHFRPRE 234
+ VGA PS G F+ GV PK+ + F + +LP G L F +
Sbjct: 152 AVQVGAVPKRPSTALAPQLGYFEAKGVEPKQHVAEFRVRNEQGLLPVGVQLQPDWFHVGQ 211
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK-ARVYPG 287
++DVRG + GF+G MKR GF G +HG + +HR GG + G +RV+PG
Sbjct: 212 WVDVRGTSRGMGFEGGMKRHGFSGQNKSHGNSLNHRTGGSVGPSQGSGSRVHPG 265
>gi|292492421|ref|YP_003527860.1| 50S ribosomal protein L3 [Nitrosococcus halophilus Nc4]
gi|291581016|gb|ADE15473.1| ribosomal protein L3 [Nitrosococcus halophilus Nc4]
Length = 216
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 75/171 (43%), Gaps = 15/171 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G+ +G ++ GE T+++ N I + E R YR L
Sbjct: 4 GLVGRKLGMTRVFTDEGESIPVTVIEATPNRISQIKTLE-----RDSYR--------ALQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD--AMLPPGTPLTAAHFRPREFL 236
V PS TK G F +GV P +KL F + A G+ L F + +
Sbjct: 51 VTLGEKRPSRVTKPLKGHFAKAGVEPGRKLHEFRLAEGEGADAEAGSELKVGLFEAGQKV 110
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T RGF GV++R+ F G A+HG + SHR G I RV+ G
Sbjct: 111 DVTGTTRGRGFAGVVRRYRFGGGDASHGNSLSHRAPGSIGQCQTPGRVFKG 161
>gi|440472607|gb|ELQ41460.1| 50S ribosomal protein L3 [Magnaporthe oryzae Y34]
gi|440487189|gb|ELQ66993.1| 50S ribosomal protein L3 [Magnaporthe oryzae P131]
Length = 456
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFII-TPDAMLPPGTPLTAAHFRPRE 234
+ VGA PS G F+ GV PK+ + F + +LP G L F +
Sbjct: 220 AVQVGAVPKRPSTALAPQLGYFEAKGVEPKQHVAEFRVRNEQGLLPVGVQLQPDWFHVGQ 279
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK-ARVYPG 287
++DVRG + GF+G MKR GF G +HG + +HR GG + G +RV+PG
Sbjct: 280 WVDVRGTSRGMGFEGGMKRHGFSGQNKSHGNSLNHRTGGSVGPSQGSGSRVHPG 333
>gi|258620527|ref|ZP_05715565.1| 50S ribosomal protein L3 [Vibrio mimicus VM573]
gi|258587406|gb|EEW12117.1| 50S ribosomal protein L3 [Vibrio mimicus VM573]
Length = 167
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
GLIG+ +G ++ ++G T+V+V N + +K + + +
Sbjct: 3 GLIGRKVGMTRVFTEDGVSIPVTVVEVEANRVSQVKTLETDGY---------------AA 47
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ V A S + TK G F +GV + L F + G+ LT F + +
Sbjct: 48 IQVTAGSKKANRVTKPEAGHFAKAGVEAGRGLWEFRLENGEEFAVGSELTVELFNEVKKV 107
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
DV G + +GFQG +KRW F+ THG + SHR G I RV+ G + R C
Sbjct: 108 DVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKIGRSHGC 167
>gi|88803750|ref|ZP_01119274.1| 50S ribosomal protein L3 [Polaribacter irgensii 23-P]
gi|88780483|gb|EAR11664.1| 50S ribosomal protein L3 [Polaribacter irgensii 23-P]
Length = 205
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 23/175 (13%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQ----VVDNHIIKYIPPEEFKPNRKPYRGEPKRK 173
+GLIG+ IG L+ +NG+ T+++ VV ++ I + +
Sbjct: 2 SGLIGRKIGMTSLFDENGKNIPCTVIEAGPCVVTQ--VRTIEVDGYS------------- 46
Query: 174 LGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPR 233
L +G + K G FK +G KKK+ F + + G ++ AHF
Sbjct: 47 --ALQLGFDDKTAKSSNKALDGHFKKAGSVAKKKVVEFQ-GFEEVYKLGDSISVAHFEEG 103
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGM-PATHGVTKSHRRGGCIASGAGKARVYPG 287
EF+DV G++ +GFQGV+KR GF G+ ATHG R G I + + ARV+ G
Sbjct: 104 EFVDVSGVSKGKGFQGVVKRHGFAGVGQATHGQHNRLRAPGSIGAASYPARVFKG 158
>gi|289209329|ref|YP_003461395.1| 50S ribosomal protein L3 [Thioalkalivibrio sp. K90mix]
gi|288944960|gb|ADC72659.1| 50S ribosomal protein L3 [Thioalkalivibrio sp. K90mix]
Length = 214
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 15/171 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLIG+ +G ++ +G T++QV +N +++ E N +
Sbjct: 4 GLIGRKLGMSRVFTDDGVSVPVTVLQVDNNRVVQIKRSEGDGYN-------------AVQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAM--LPPGTPLTAAHFRPREFL 236
V A + S +K G + + V P + L F + D + L PG +T F + +
Sbjct: 51 VTAGARKASRVSKPEAGHYAAASVEPGRGLWEFRVEADELEGLAPGDAITVDRFEEGQVV 110
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV + +GFQG +KR F+ ATHG + +HR G I RV+ G
Sbjct: 111 DVTSQSKGKGFQGAVKRHNFRTQDATHGNSLAHRAPGSIGQNQSPGRVFKG 161
>gi|119718125|ref|YP_925090.1| 50S ribosomal protein L3 [Nocardioides sp. JS614]
gi|166990937|sp|A1SNL8.1|RL3_NOCSJ RecName: Full=50S ribosomal protein L3
gi|119538786|gb|ABL83403.1| LSU ribosomal protein L3P [Nocardioides sp. JS614]
Length = 223
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G +G +W +N T++ N + + P N +
Sbjct: 9 GLLGTKLGMTQVWDENNRVVPVTVIAAGTNVVTQVRTPATDGYN-------------AIQ 55
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
VG D TK G F +G P++ L A G L F E +DV
Sbjct: 56 VGYGEIDGRKVTKPQAGHFGKAGTTPRRHLVEIRTALAADYTVGQELAVDTFAAGEEIDV 115
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +GF G MKR GF G+ A+HG ++HR+ G I + A RV+ G
Sbjct: 116 TGTSKGKGFAGTMKRHGFAGVSASHGAHRNHRKPGSIGACATPGRVFKG 164
>gi|294101628|ref|YP_003553486.1| 50S ribosomal protein L3 [Aminobacterium colombiense DSM 12261]
gi|293616608|gb|ADE56762.1| 50S ribosomal protein L3 [Aminobacterium colombiense DSM 12261]
Length = 208
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 18/173 (10%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
G++G+ +G ++ + G+ T++Q ++ PE K +
Sbjct: 4 GILGRKLGMTQIYNEAGQAVPVTVIQAGPCPVVSLKTPE-------------KNGYSAVQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+G P TK G F + V P++ L F + G +T + F E ++V
Sbjct: 51 LGFGEIKPHKLTKPVKGQFDKASVEPQRYLREFRLDNVKGYEVGQAITVSLFEEGEKINV 110
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQ 291
G++ +GF GVMKR+ F G ATHGV+K+HR GG +SGA YPG + +
Sbjct: 111 VGMSKGKGFAGVMKRFNFGGTFATHGVSKTHRHGG--SSGASS---YPGKIFK 158
>gi|118591184|ref|ZP_01548583.1| 50S ribosomal protein L3 [Stappia aggregata IAM 12614]
gi|118436260|gb|EAV42902.1| 50S ribosomal protein L3 [Stappia aggregata IAM 12614]
Length = 225
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%)
Query: 165 PYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTP 224
+R + K L +GA + K G F + V PK+ + F ++ + ++ G
Sbjct: 26 AHRTDEKNGYTALQLGAGTRKVKNTPKALRGHFAVAKVEPKRTVAEFRVSAENLIDVGAE 85
Query: 225 LTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARV 284
LTA H+ +F+DV G ++ +GF G MKR F G A+HG + SHR G RV
Sbjct: 86 LTADHYVEGQFVDVTGTSIGKGFAGAMKRHNFGGGRASHGNSVSHRSHGSTGQCQDPGRV 145
Query: 285 YPG 287
+ G
Sbjct: 146 FKG 148
>gi|402081720|gb|EJT76865.1| 50S ribosomal protein L3 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 400
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFII-TPDAMLPPGTPLTAAHFRPRE 234
+ VGA P+ G F+ GV PK+ + F + P+ +LP G L F +
Sbjct: 154 AVQVGAGPKRPATVPAPQLGYFEAKGVEPKQHVAEFKVRGPEGLLPVGVQLMPDWFHIGQ 213
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK-ARVYPG 287
++DVRG + GF G MKR GF G PA+HG + +HR G G +RV PG
Sbjct: 214 WVDVRGTSRGMGFAGGMKRHGFSGQPASHGNSLNHRTIGSAGPSQGSGSRVLPG 267
>gi|350567992|ref|ZP_08936398.1| 50S ribosomal protein L3 [Propionibacterium avidum ATCC 25577]
gi|348662244|gb|EGY78913.1| 50S ribosomal protein L3 [Propionibacterium avidum ATCC 25577]
Length = 228
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 112 TTSSKRT--GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGE 169
T +++RT G++G +G LW ++ + T++Q + + PE G
Sbjct: 5 TMTNERTVKGVLGTKLGMTQLWDEHNKLVPVTVIQAGPCVVTQVRTPE--------TDGY 56
Query: 170 PKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAH 229
+LG V A+ TK G F+ +GV P++ L + G +TA
Sbjct: 57 SAVQLGIGAVKAKK-----VTKPEAGHFEKAGVTPRRHLVELRTADASEYTLGQEITADV 111
Query: 230 FRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIA 276
F +F+DV G + +G GVMKR GF G+ ATHGV + HR G I
Sbjct: 112 FSESDFVDVTGTSKGKGTAGVMKRHGFGGLRATHGVHRKHRSPGSIG 158
>gi|257125036|ref|YP_003163150.1| 50S ribosomal protein L3 [Leptotrichia buccalis C-1013-b]
gi|257048975|gb|ACV38159.1| ribosomal protein L3 [Leptotrichia buccalis C-1013-b]
Length = 208
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 51/99 (51%)
Query: 190 TKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQG 249
TK G+FK +GV PK+ L F + A G + EF+D+ G + +G G
Sbjct: 58 TKPELGIFKKAGVTPKRFLKEFKVANPADFALGQEIKVDVLEGIEFVDISGTSKGKGTAG 117
Query: 250 VMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGG 288
VMKR F G A+HGV+++HR GG A GA P G
Sbjct: 118 VMKRHNFGGNRASHGVSRNHRLGGSNAGGAASNSNVPKG 156
>gi|253998014|ref|YP_003050077.1| 50S ribosomal protein L3 [Methylovorus glucosetrophus SIP3-4]
gi|313200081|ref|YP_004038739.1| 50S ribosomal protein L3 [Methylovorus sp. MP688]
gi|253984693|gb|ACT49550.1| ribosomal protein L3 [Methylovorus glucosetrophus SIP3-4]
gi|312439397|gb|ADQ83503.1| ribosomal protein L3 [Methylovorus sp. MP688]
Length = 214
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 17/172 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKY-IPPEEFKPNRKPYRGEPKRKLGCL 177
GLIG+ +G ++ GE T+++VV N + + P + + GE +
Sbjct: 4 GLIGRKVGMTRVFTDEGESIPVTVLEVVPNRVTQVKTPSSDGYAGLQVAHGERR------ 57
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAML--PPGTPLTAAHFRPREF 235
S TK G + +GV + F + D + G +T F+ ++
Sbjct: 58 --------ASRVTKALAGHYAKAGVAAGSGIKEFAVAEDVLANYAVGGQITVELFQAGQY 109
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G+++ +GF G +KR F A+HG ++SH G I RV+PG
Sbjct: 110 VDVTGVSLGKGFAGAIKRHNFSSNRASHGNSRSHNVPGSIGMAQDPGRVFPG 161
>gi|148263140|ref|YP_001229846.1| 50S ribosomal protein L3 [Geobacter uraniireducens Rf4]
gi|189042846|sp|A5GAW5.1|RL3_GEOUR RecName: Full=50S ribosomal protein L3
gi|146396640|gb|ABQ25273.1| LSU ribosomal protein L3P [Geobacter uraniireducens Rf4]
Length = 211
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 14/167 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLIGK +G ++ ++G + T+V+ +I+ E K +
Sbjct: 4 GLIGKKLGMTQIFAEDGRRIPVTVVEAGPCVVIQKKTKE-------------KDGYSAIQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
VG S + + G K +G L + G L+A F P + +DV
Sbjct: 51 VGFNSQEAAKANSAVVGHCKTAGSGVFSFLRELRVDNADQYSVGDVLSAEIFAPGDLVDV 110
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
G ++ +GFQGVMKRWGFKG A+HG ++ HR G I A +RV+
Sbjct: 111 TGTSIGKGFQGVMKRWGFKGGRASHG-SRFHRAPGSIGCSATPSRVF 156
>gi|156044218|ref|XP_001588665.1| hypothetical protein SS1G_10212 [Sclerotinia sclerotiorum 1980]
gi|154694601|gb|EDN94339.1| hypothetical protein SS1G_10212 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 311
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPRE 234
+ VGA PS ++ G F+ S V PK+ + F + + +L G + A F +
Sbjct: 122 AVQVGAGWKHPSNVSRPELGHFEASEVAPKRHMAEFRVKNEGGLLEVGRSIGAEWFIEGQ 181
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK-ARVYPG 287
F+D R + GF G MK+WG+ G PA+HG +K+HR G + G +RV+PG
Sbjct: 182 FVDARANSRGMGFAGGMKKWGWSGQPASHGNSKNHRTMGSAGASQGSGSRVHPG 235
>gi|334336186|ref|YP_004541338.1| 50S ribosomal protein L3 [Isoptericola variabilis 225]
gi|334106554|gb|AEG43444.1| 50S ribosomal protein L3 [Isoptericola variabilis 225]
Length = 217
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 54/103 (52%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP TK G F+ +GV P++ + + G +TAA F +DV G T
Sbjct: 63 DPRKVTKPLKGHFEKAGVTPRRHVAEVRTSDATEYTLGQEITAAAFEAGAVVDVVGTTKG 122
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+G GVMKR GF G+ A+HG ++HR+ G I + +RV+ G
Sbjct: 123 KGTAGVMKRHGFAGVGASHGAHRNHRKPGSIGGASTPSRVFKG 165
>gi|407982445|ref|ZP_11163121.1| 50S ribosomal protein L3 [Mycobacterium hassiacum DSM 44199]
gi|407375957|gb|EKF24897.1| 50S ribosomal protein L3 [Mycobacterium hassiacum DSM 44199]
Length = 217
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 16/174 (9%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R G++G +G ++ +N T+V+ N + + PE R Y
Sbjct: 3 RKGILGTKLGMTQVFDENNRVVPVTVVKAGPNVVTRIRTPE-----RDGYS--------A 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPP---GTPLTAAHFRPR 233
+ + +P K G F +GV P++ + + +A G +TA F P
Sbjct: 50 VQLAYGEINPRKVNKPLAGQFAAAGVNPRRHIAEIRLDDEAAAAEYEVGQEVTADIFTPG 109
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
++DV G + +GF G MKR GF+G A+HG HRR G I A RV+ G
Sbjct: 110 SYVDVTGTSKGKGFAGTMKRHGFRGQGASHGAQAVHRRPGSIGGCATPGRVFKG 163
>gi|269101057|ref|YP_003289205.1| 50S ribosomal protein L3 [Ectocarpus siliculosus]
gi|266631565|emb|CAV31236.1| Chloroplast 50S ribosomal protein L3 [Ectocarpus siliculosus]
gi|270118695|emb|CAT18766.1| Chloroplast 50S ribosomal protein L3 [Ectocarpus siliculosus]
Length = 207
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 14/172 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
G+ G IG ++ KNG T+V V I + + E +
Sbjct: 4 GIFGNKIGMTQIFDKNGLALPVTVVSVGPCFITQL-------------KTEKTNGYDAIQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+G G S ++K G + +G+ P LC + + G LT +F+ +F++V
Sbjct: 51 IGYSKGHTSKFSKAELGHLEKNGLSPLYHLCEYRVNDLKNYSLGQILTVDNFQVGQFVNV 110
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVL 290
G ++ +GF G KR FK P THG +K+HR G I G RV+PG ++
Sbjct: 111 TGKSIGKGFSGNQKRHKFKRGPMTHG-SKNHRAPGSIGPGTTPGRVFPGKLM 161
>gi|379058900|ref|ZP_09849426.1| 50S ribosomal protein L3 [Serinicoccus profundi MCCC 1A05965]
Length = 207
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP T+ G F +GV P++ + A G +TA F + +DV G T
Sbjct: 53 DPRKVTQPLKGHFAKAGVTPRRHVAELRTADAADYELGQEITAEAFEGGQKVDVTGTTKG 112
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GF GVMKR GF G+ A+HG ++HR+ G I A RV+ G
Sbjct: 113 KGFAGVMKRHGFHGVSASHGAHRNHRKPGSIGGCATPGRVFKG 155
>gi|84997293|ref|XP_953368.1| 50S ribosomal protein L3 [Theileria annulata strain Ankara]
gi|65304364|emb|CAI76743.1| 50S ribosomal protein L3, putative [Theileria annulata]
Length = 347
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 19/214 (8%)
Query: 66 IENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKII 125
+E + RN K IE+ P + E L I P +P+ +++R+G++ I
Sbjct: 42 VERMNRNRK--IEKPTKYLDSIPETEVFTEEDVKKLSITPTKPI---WNTRRSGVLAYKI 96
Query: 126 GQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGD 185
G LW G + T+ QV +++ R K L +G +
Sbjct: 97 GCMSLWDDWGVRHAVTVCQVDRCVVLEK-------------RTIEKHGYEALQLGLGYKN 143
Query: 186 PSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDR 245
+K G F G K + F + D +LP G + HF P +++ V G + +
Sbjct: 144 IKQQSKPNIGRFIKLGTGSKNHIAEFKCSSDCLLPEGHYFSVRHFTPGQWVFVSGWSKAK 203
Query: 246 GFQGVMKRWGFKGMPATHGVT-KSHRRGGCIASG 278
GF+G M+RW F G +HG K+H G I+ G
Sbjct: 204 GFKGAMRRWSFGGQNQSHGTECKAHSAPGSISQG 237
>gi|257069508|ref|YP_003155763.1| 50S ribosomal protein L3P [Brachybacterium faecium DSM 4810]
gi|256560326|gb|ACU86173.1| LSU ribosomal protein L3P [Brachybacterium faecium DSM 4810]
Length = 226
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 19/182 (10%)
Query: 110 EITTSSKR--TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKP 165
E+T R +G++G +G +W +NG+ T+VQ N + I+ + + + +
Sbjct: 4 ELTGQKARPVSGVLGTKLGMTQVWDENGKLVPVTVVQTGANVVTQIRSVETDGYDAVQIA 63
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPL 225
+ G + DP ++ G F+ +GV P++ L A G +
Sbjct: 64 F--------GQI-------DPRKVSQPLRGHFEKAGVTPRRHLVELRTVNAAEYTLGQEI 108
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
A+ F + +DV G + +G GVMKR GF G+ A+HG ++HR+ G I + RV+
Sbjct: 109 DASVFEAGQKVDVVGTSKGKGTAGVMKRHGFAGVGASHGQHRNHRKPGSIGGASTPGRVF 168
Query: 286 PG 287
G
Sbjct: 169 KG 170
>gi|291613236|ref|YP_003523393.1| 50S ribosomal protein L3 [Sideroxydans lithotrophicus ES-1]
gi|291583348|gb|ADE11006.1| 50S ribosomal protein L3 [Sideroxydans lithotrophicus ES-1]
Length = 214
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 19/173 (10%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
GL+G+ IG ++ +G T++ V +N + IK + + + Y +R
Sbjct: 4 GLVGRKIGMTRIFTDDGTSLPVTVLDVSNNRVTQIKTAATDGYSAVQVAY--GTRR---- 57
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAM--LPPGTPLTAAHFRPRE 234
S TK G F +GV L F TP+ + L G + F+ +
Sbjct: 58 ---------ASRVTKAAAGHFAKAGVEAGSVLKEFTATPEQLSSLTLGGKVGVDMFQVGQ 108
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G+T+ +G+ G +KR+ FK ATHG +KSH G I RV+PG
Sbjct: 109 KVDVTGVTIGKGYAGTIKRYHFKSGRATHGNSKSHNVPGSIGMAQDPGRVFPG 161
>gi|172039995|ref|YP_001799709.1| 50S ribosomal protein L3 [Corynebacterium urealyticum DSM 7109]
gi|448822983|ref|YP_007416148.1| 50S ribosomal protein L3 [Corynebacterium urealyticum DSM 7111]
gi|226725155|sp|B1VET6.1|RL3_CORU7 RecName: Full=50S ribosomal protein L3
gi|171851299|emb|CAQ04275.1| 50S ribosomal protein L3 [Corynebacterium urealyticum DSM 7109]
gi|448276480|gb|AGE35904.1| 50S ribosomal protein L3 [Corynebacterium urealyticum DSM 7111]
Length = 218
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 49/103 (47%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP K G FK +GV P++ + + + G +T F +F+DV G +
Sbjct: 61 DPRKVNKPESGHFKKAGVTPRRHVAEIRVADASGYEVGQDVTVEIFNEVDFVDVTGTSKG 120
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GF G MKR GF G A HG +HRR G I A RV+ G
Sbjct: 121 HGFAGGMKRHGFAGQGAAHGNQAAHRRVGGIGGAATPGRVFKG 163
>gi|42520530|ref|NP_966445.1| 50S ribosomal protein L3 [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|42410269|gb|AAS14379.1| ribosomal protein L3 [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 240
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 16/175 (9%)
Query: 113 TSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKR 172
S +R GL+ IG ++ N + TL+ + + HII +G+ K
Sbjct: 5 NSLRRIGLLMMNIGHTAMYSDN-SRMAVTLLHLSETHII-------------DIKGQDKC 50
Query: 173 KLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRP 232
+++G +GD K K G+ K KL + + + G + HF
Sbjct: 51 GYNSVILG--TGDFKNIAKPQLEYLKKKGINNKCKLYESRLNDLSGIECGKKVGINHFVV 108
Query: 233 REFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
++LD+ G ++ +GF GVMKR F G+ A+HGV+ +HR G RV+ G
Sbjct: 109 GQYLDITGYSIGKGFAGVMKRHNFSGLRASHGVSIAHRSQGSTGQCQDPGRVFKG 163
>gi|312200020|ref|YP_004020081.1| 50S ribosomal protein L3 [Frankia sp. EuI1c]
gi|311231356|gb|ADP84211.1| 50S ribosomal protein L3 [Frankia sp. EuI1c]
Length = 232
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 70/169 (41%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G +G +W T++Q N + + P+ G +LG
Sbjct: 8 GLLGTKLGMTQVWDAQNRVVPITVIQAGPNVVTQVKTPDN--------DGYAAVQLGYGE 59
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+ DP K G F +GV P++ L G L + F +DV
Sbjct: 60 I-----DPRKTNKPTRGHFAAAGVTPRRHLAELRTADAGNYSAGLQLDGSVFDAGTVVDV 114
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +GF GVMKR GFKG+ A HGV + HR G + A RV+ G
Sbjct: 115 TGTSKGKGFAGVMKRHGFKGLGAGHGVERKHRSPGSVGGCATPGRVFKG 163
>gi|404405123|ref|ZP_10996707.1| 50S ribosomal protein L3 [Alistipes sp. JC136]
Length = 204
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 24/175 (13%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQ----VVDNHIIKYIPPEEFKPNRKPYRGEPKRK 173
+GLIGK IG ++ G+ T+++ VV IK + + ++ + Y + ++
Sbjct: 2 SGLIGKKIGMTSVYSAEGKNIPCTVIEAGPCVVTQ--IKTVEKDTYEAVQIAYDEKSEKH 59
Query: 174 LGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPR 233
T G FK +G PK+KL F P+ L G LT F
Sbjct: 60 ---------------STSSLLGHFKKAGTTPKRKLAEFKDMPEVAL--GDTLTVELFSEE 102
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPA-THGVTKSHRRGGCIASGAGKARVYPG 287
+++DV G++ +GFQGV+KR GF G+ THG R+ G + + + +RV+ G
Sbjct: 103 DWVDVTGISKGKGFQGVVKRHGFGGVGGQTHGQHNRARKPGSLGASSYPSRVFKG 157
>gi|163847923|ref|YP_001635967.1| 50S ribosomal protein L3 [Chloroflexus aurantiacus J-10-fl]
gi|222525803|ref|YP_002570274.1| 50S ribosomal protein L3 [Chloroflexus sp. Y-400-fl]
gi|189042836|sp|A9WH66.1|RL3_CHLAA RecName: Full=50S ribosomal protein L3
gi|254803663|sp|B9LJD2.1|RL3_CHLSY RecName: Full=50S ribosomal protein L3
gi|163669212|gb|ABY35578.1| ribosomal protein L3 [Chloroflexus aurantiacus J-10-fl]
gi|222449682|gb|ACM53948.1| ribosomal protein L3 [Chloroflexus sp. Y-400-fl]
Length = 210
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 73/169 (43%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G+ IG + G T++ + + PE R Y +
Sbjct: 4 GLLGRKIGMMQYFTAQGMAIPVTVIAAGPCIVTQIRTPE-----RDGYS--------AVQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+G E +P TK G K SG + L F PG +T FRP + +D+
Sbjct: 51 LGYEEVEPRKLTKPQQGHLKASGGKMLRYLREFSADDPQAHTPGEVVTVELFRPGQKVDI 110
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + RGF GV+KR GF+G P THG + HR G I +G RV+ G
Sbjct: 111 SGTSKGRGFAGVVKRHGFRGGPKTHGQSDRHRAPGSIGAGTTPGRVWKG 159
>gi|117927515|ref|YP_872066.1| 50S ribosomal protein L3P [Acidothermus cellulolyticus 11B]
gi|212288244|sp|A0LRM0.1|RL3_ACIC1 RecName: Full=50S ribosomal protein L3
gi|117647978|gb|ABK52080.1| LSU ribosomal protein L3P [Acidothermus cellulolyticus 11B]
Length = 222
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G+ +G ++ ++G T+V+ + + P+R Y +
Sbjct: 7 GLLGEKLGMTQVFDESGRVIPVTVVRAGPCVVTQV-----RTPDRDGYS--------AVQ 53
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+G + DP K G F+ +GV P++ L A G +T F P + +DV
Sbjct: 54 LGYGAVDPRRVNKPLAGHFRAAGVTPRRYLAEVRTGDAAEYTVGQEVTVEIFTPGQRVDV 113
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G++ +GF G+MKR F+G+P +HG + HR G I + A RV+ G
Sbjct: 114 AGVSKGKGFAGLMKRHNFRGLPDSHGTERKHRSPGSIGACATPGRVFKG 162
>gi|395205594|ref|ZP_10396225.1| 50S ribosomal protein L3 [Propionibacterium humerusii P08]
gi|422441403|ref|ZP_16518213.1| 50S ribosomal protein L3 [Propionibacterium acnes HL037PA3]
gi|422472411|ref|ZP_16548899.1| 50S ribosomal protein L3 [Propionibacterium acnes HL037PA2]
gi|422572101|ref|ZP_16647672.1| 50S ribosomal protein L3 [Propionibacterium acnes HL044PA1]
gi|313836021|gb|EFS73735.1| 50S ribosomal protein L3 [Propionibacterium acnes HL037PA2]
gi|314929560|gb|EFS93391.1| 50S ribosomal protein L3 [Propionibacterium acnes HL044PA1]
gi|314970555|gb|EFT14653.1| 50S ribosomal protein L3 [Propionibacterium acnes HL037PA3]
gi|328906230|gb|EGG26005.1| 50S ribosomal protein L3 [Propionibacterium humerusii P08]
Length = 223
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 13/158 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
G++G +G LW ++ + T++Q + + PE G +LG
Sbjct: 9 GVLGTKLGMTQLWDEHNKLVPVTVIQAGPCVVTQVRTPE--------TDGYSAVQLGYGA 60
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
V A++ TK G F+ +GV P++ L + G +TA F +F+DV
Sbjct: 61 VKAKN-----VTKPEAGHFEKAGVTPRRHLVELRTADASEYTLGQEITAGVFSESDFVDV 115
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIA 276
G + +G GVMKR GF G+ ATHGV + HR G I
Sbjct: 116 TGTSKGKGTAGVMKRHGFGGLRATHGVHRKHRSPGSIG 153
>gi|380300464|ref|ZP_09850157.1| 50S ribosomal protein L3P [Brachybacterium squillarum M-6-3]
Length = 226
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 13/170 (7%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
+G++G +G +W +NG+ T+VQ N + + E + +
Sbjct: 14 SGVLGTKLGMTQVWDENGKFIPVTVVQTGANVVTQVRSAETDGYD-------------AV 60
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
+ DP +K G F+ +GV P++ L + G + A+ F + +D
Sbjct: 61 QIAYGQIDPRKVSKPLKGHFEKAGVTPRRHLAELRTSNAGEYTLGQEIDASIFAAGQKVD 120
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G + +G GVMKR GF G+ A+HG ++HR+ G I + RV+ G
Sbjct: 121 VVGTSKGKGTAGVMKRHGFAGVGASHGAHRNHRKPGSIGGASTPGRVFKG 170
>gi|365876168|ref|ZP_09415691.1| 50S ribosomal protein L3p (L3e) [Elizabethkingia anophelis Ag1]
gi|442588492|ref|ZP_21007303.1| 50S ribosomal protein L3P [Elizabethkingia anophelis R26]
gi|365756180|gb|EHM98096.1| 50S ribosomal protein L3p (L3e) [Elizabethkingia anophelis Ag1]
gi|442561726|gb|ELR78950.1| 50S ribosomal protein L3P [Elizabethkingia anophelis R26]
Length = 208
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 14/171 (8%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
+G+IGK IG L+ + G+ T++Q +++ E + Y+ +
Sbjct: 2 SGIIGKKIGMTSLFNEEGKNIPCTVIQAGPCSVLQVRTIE-----KDGYK--------SV 48
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
+G + +K G FK +G PK KL F + G +T F EF+D
Sbjct: 49 QLGFDDKSEKNVSKALAGHFKKAGSTPKAKLVEFYREFVDEVKVGEEVTVNLFAEGEFVD 108
Query: 238 VRGLTVDRGFQGVMKRWGFKG-MPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G + +GFQGV+KR F G M A+HG R G I +G+ +RV+ G
Sbjct: 109 VTGTSKGKGFQGVVKRHNFGGVMQASHGQHNRLRAPGSIGAGSDPSRVFKG 159
>gi|300775014|ref|ZP_07084877.1| 50S ribosomal protein L3 [Chryseobacterium gleum ATCC 35910]
gi|300506829|gb|EFK37964.1| 50S ribosomal protein L3 [Chryseobacterium gleum ATCC 35910]
Length = 208
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 18/173 (10%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLG 175
+G+IGK IG L+ + G+ T++Q + ++ + + +K + + + ++ +G
Sbjct: 2 SGIIGKKIGMTSLFNEEGKNIPCTVIQAGPCSVLQVRTLEKDGYKAVQLGFDDKSEKNVG 61
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREF 235
K G FK +G PK KL F + G + F E+
Sbjct: 62 ---------------KALAGHFKKAGSAPKAKLVEFYREFVDEVKVGEEVKVDLFAEGEY 106
Query: 236 LDVRGLTVDRGFQGVMKRWGFKG-MPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G + +GFQGV+KR GF G M ATHG R G I +G+ +RV+ G
Sbjct: 107 VDVTGTSKGKGFQGVVKRHGFGGVMQATHGQHNRLRAPGSIGAGSDPSRVFKG 159
>gi|322710687|gb|EFZ02261.1| 60S ribosomal protein L3 [Metarhizium anisopliae ARSEF 23]
Length = 639
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITP-DAMLPPGTPLTAAHFRPRE 234
+ +GA S P T G ++ G+ PK +L F + + +LP G+ L F+ +
Sbjct: 428 AVQIGAGSRQPRNVTSPMLGYYEAKGIAPKSQLAEFTVRGREGLLPVGSQLLPDWFQTGQ 487
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK-ARVYPG 287
+DVR + GF G MKR GF G A+HG +K+HR G G +RV PG
Sbjct: 488 IVDVRAKSRGMGFAGGMKRHGFAGQEASHGNSKNHRTIGTTGPSQGSGSRVLPG 541
>gi|171060669|ref|YP_001793018.1| 50S ribosomal protein L3 [Leptothrix cholodnii SP-6]
gi|212288405|sp|B1Y8I7.1|RL3_LEPCP RecName: Full=50S ribosomal protein L3
gi|170778114|gb|ACB36253.1| ribosomal protein L3 [Leptothrix cholodnii SP-6]
Length = 226
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 19/176 (10%)
Query: 116 KRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRK 173
+R GL+G+ +G ++ +G+ T++ V +N + IK + + + + +
Sbjct: 8 QRLGLLGRKVGMMRIFTDDGDAVPVTVLDVSNNRVAQIKTVETDGYSAVQVAF------- 60
Query: 174 LGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD--AMLPPGTPLTAAHFR 231
GA S TK G +GV + L F ++ + A PG+ L A F+
Sbjct: 61 ------GARK--ASRVTKPEAGHLAKAGVESGELLQEFRVSAEVAAECKPGSQLPIAMFQ 112
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +DV+G T+ +GF G +KR F A+HG ++SH G I+ RV+PG
Sbjct: 113 AGQQVDVQGTTIGKGFAGTIKRHHFGSQRASHGNSRSHNVPGSISMAQDPGRVFPG 168
>gi|149919182|ref|ZP_01907665.1| 50S ribosomal protein L3 [Plesiocystis pacifica SIR-1]
gi|149819896|gb|EDM79318.1| 50S ribosomal protein L3 [Plesiocystis pacifica SIR-1]
Length = 223
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 15/175 (8%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
+++ GL+ K IG + ++G + T++ N + + E R Y
Sbjct: 2 NRQMGLLTKKIGMTEFYKEDGTRVPVTVLLAKGNVVTAHRTVE-----RDGYT------- 49
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD--AMLPPGTPLTAAHFRP 232
L + + S +K G FK + V PK+K+ F + D A G+ + + F
Sbjct: 50 -ALQLAFDDQKASRLSKPKLGQFKKAEVSPKRKIKEFRVAADVVAQHAVGSEVDVSIFSD 108
Query: 233 REFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+ +DV G + +GFQGVMKR G +G THG + +R GG I RV PG
Sbjct: 109 GQLVDVTGTSKGKGFQGVMKRHGMRGEKRTHGQHEVYRHGGSIGCRLTPGRVIPG 163
>gi|313206395|ref|YP_004045572.1| 50S ribosomal protein L3 [Riemerella anatipestifer ATCC 11845 = DSM
15868]
gi|383485699|ref|YP_005394611.1| 50S ribosomal protein L3 [Riemerella anatipestifer ATCC 11845 = DSM
15868]
gi|386321617|ref|YP_006017779.1| 50S ribosomal protein L3 [Riemerella anatipestifer RA-GD]
gi|416109870|ref|ZP_11591750.1| LSU ribosomal protein L3p (L3e) [Riemerella anatipestifer RA-YM]
gi|442314409|ref|YP_007355712.1| Ribosomal protein L3 [Riemerella anatipestifer RA-CH-2]
gi|312445711|gb|ADQ82066.1| LSU ribosomal protein L3P [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|315023664|gb|EFT36668.1| LSU ribosomal protein L3p (L3e) [Riemerella anatipestifer RA-YM]
gi|325336160|gb|ADZ12434.1| Ribosomal protein L3 [Riemerella anatipestifer RA-GD]
gi|380460384|gb|AFD56068.1| LSU ribosomal protein l3p [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|441483332|gb|AGC40018.1| Ribosomal protein L3 [Riemerella anatipestifer RA-CH-2]
Length = 207
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 15/171 (8%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
+G+IGK IG L+ ++G+ T++Q +++ E + Y G
Sbjct: 2 SGIIGKKIGMTSLFDESGKNIPCTVIQAGPCSVLQVRTVE-----KDGYVG--------Y 48
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
+G + K G FK +G PK KL F D L G +T F E++D
Sbjct: 49 QLGFDDKSEKNVGKALAGHFKKAGSTPKAKLHEFHHGFDN-LQVGDEVTVKLFSEGEYVD 107
Query: 238 VRGLTVDRGFQGVMKRWGFKG-MPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G + +GFQGV+KR GF G M ATHG R G I +G+ +RV+ G
Sbjct: 108 VTGTSKGKGFQGVVKRHGFGGVMQATHGQHNRLRAPGSIGAGSDPSRVFKG 158
>gi|317507409|ref|ZP_07965143.1| 50S ribosomal protein L3 [Segniliparus rugosus ATCC BAA-974]
gi|316254294|gb|EFV13630.1| 50S ribosomal protein L3 [Segniliparus rugosus ATCC BAA-974]
Length = 212
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 51/103 (49%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP K G F+ +GV P++ L + + G L + F + +DV G +
Sbjct: 55 DPRKVNKPLTGQFEKAGVTPRRHLAELRLEDVSGYEVGQQLDVSVFADGDLVDVTGTSKG 114
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GF G MKR GFKG A HG K HRR G I + A RV+ G
Sbjct: 115 KGFAGTMKRHGFKGQGAAHGAHKVHRRPGSIGACAFPGRVFKG 157
>gi|163783267|ref|ZP_02178260.1| elongation factor Tu [Hydrogenivirga sp. 128-5-R1-1]
gi|159881375|gb|EDP74886.1| elongation factor Tu [Hydrogenivirga sp. 128-5-R1-1]
Length = 236
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 72/170 (42%), Gaps = 15/170 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
G+IG+ +G ++ +G T++QV N++++ PE K +
Sbjct: 4 GVIGRKLGMTRVFTSDGTAVPVTVIQVPANYVVQVKSPE-------------KDGYSAVQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAH-FRPREFLD 237
VGA TK G F V + L F + G L F+P + +D
Sbjct: 51 VGAVEAKEKHLTKPLMGHFSKKNVKLLRYLKEFRVDNTQDYQEGQELKLEEVFKPGDLVD 110
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G + RGF G MKRW F G P +HG + HR G I + RV+ G
Sbjct: 111 VVGTSKGRGFAGTMKRWDFGGFPKSHG-HRYHRAVGSIGNRTDPGRVWKG 159
>gi|254796647|ref|YP_003081483.1| 50S ribosomal protein L3 [Neorickettsia risticii str. Illinois]
gi|254589884|gb|ACT69246.1| ribosomal protein L3 [Neorickettsia risticii str. Illinois]
Length = 210
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 18/171 (10%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R GL+ K +G ++ TL+Q+ +N ++ + R + +K
Sbjct: 3 RVGLLLKKVGCTSVYDDRSSLVPVTLLQLEENVVLSAEERDGVVVTRVSFGTRKLKK--- 59
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
P L GL K ++ F ++P + P LT HFRP +++
Sbjct: 60 ---------PQLAYLRKLGLEKGG------RVVEFRVSPRFVPEPLGSLTVEHFRPGQYV 104
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D G ++ +GF GVMKR F G+ A+HGV+ SHR GG +V+ G
Sbjct: 105 DAVGTSIGKGFAGVMKRHNFAGLRASHGVSISHRSGGSTGQCQDPGKVFKG 155
>gi|344344804|ref|ZP_08775663.1| 50S ribosomal protein L3 [Marichromatium purpuratum 984]
gi|343803498|gb|EGV21405.1| 50S ribosomal protein L3 [Marichromatium purpuratum 984]
Length = 216
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 15/171 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
G+IG+ G L+ ++GE T+++V N + + E YR +
Sbjct: 4 GVIGRKAGMTRLFNEDGESIPVTVIEVQPNRVSQVKSAET-----DGYR--------AIQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD--AMLPPGTPLTAAHFRPREFL 236
V S S TK G F +G+ + L F + + A + G ++ + F + +
Sbjct: 51 VAFGSRRASRVTKPMAGHFAKAGIEAGEVLREFRLEGEEGADIEVGQEISVSMFEAGQKV 110
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DVRG+T RGF G ++R F+G ATHG + SHR G I RV+ G
Sbjct: 111 DVRGVTKGRGFAGTIRRHHFRGQDATHGNSLSHRAPGSIGQNQTPGRVFKG 161
>gi|226293678|gb|EEH49098.1| 54S ribosomal protein L9 [Paracoccidioides brasiliensis Pb18]
Length = 295
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 190 TKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPREFLDVRGLTVDRGFQ 248
T+ G F +GV PK+ + F + ++ +LP G + A F+ +F+D R + GF+
Sbjct: 134 TRPMLGHFAANGVAPKRHIHEFRVKDESGLLPIGEVINADWFQEGQFVDARSNSRGMGFE 193
Query: 249 GVMKRWGFKGMPATHGVTKSHRRGGCIA-SGAGKARVYPG 287
GVMKR GF G +HGV+ +HR G S G +RV+PG
Sbjct: 194 GVMKRHGFHGQDRSHGVSLAHRSLGSAGPSQGGGSRVHPG 233
>gi|21672770|ref|NP_660837.1| 50S ribosomal protein L3 [Buchnera aphidicola str. Sg (Schizaphis
graminum)]
gi|25009109|sp|Q8K950.1|RL3_BUCAP RecName: Full=50S ribosomal protein L3
gi|21623417|gb|AAM68048.1| 50S ribosomal protein L3 [Buchnera aphidicola str. Sg (Schizaphis
graminum)]
Length = 209
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 17/171 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
GL+GK +G ++ K G T++Q+ +N I I+ I +++ Y + L
Sbjct: 3 GLVGKKLGMSRIFTKEGSSIPITVIQIQENRITQIRNIKTDKY------YAIQVTTGLKK 56
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L + K G F SGV P + L F I + G + F + +
Sbjct: 57 L---------NRLKKPESGHFLKSGVIPGRGLWEFRINNNEKFQIGQSIKINIFNDIKKV 107
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G++ +GF G +KRW F+ ATHG + SHR G I RV+ G
Sbjct: 108 DVTGISKGKGFSGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGRVFKG 158
>gi|295660136|ref|XP_002790625.1| mitochondrial 54S ribosomal protein YmL9 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226281500|gb|EEH37066.1| 54S ribosomal protein L9 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 297
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 190 TKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPREFLDVRGLTVDRGFQ 248
T+ G F +GV PK+ + F + ++ +LP G + A F+ +F+D R + GF+
Sbjct: 136 TRPMLGHFAANGVAPKRHIHEFRVKDESGLLPIGEVINADWFQEGQFVDARSNSRGMGFE 195
Query: 249 GVMKRWGFKGMPATHGVTKSHRRGGCIA-SGAGKARVYPG 287
GVMKR GF G +HGV+ +HR G S G +RV+PG
Sbjct: 196 GVMKRHGFHGQDRSHGVSLAHRSLGSAGPSQGGGSRVHPG 235
>gi|363423640|ref|ZP_09311703.1| 50S ribosomal protein L3 [Rhodococcus pyridinivorans AK37]
gi|359731578|gb|EHK80620.1| 50S ribosomal protein L3 [Rhodococcus pyridinivorans AK37]
Length = 217
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 75/169 (44%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
G++G +G ++ +N T+V+ N ++ I EE R Y L
Sbjct: 7 GILGTKLGMTQVFDENNRVVPVTVVKAGPN-VVTQIRTEE----RDGYNAVQ------LA 55
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
GA + P K G F+ +GV P++ L I + G LTA F ++DV
Sbjct: 56 YGAIA--PRKVNKPVRGQFEKAGVTPRRHLVELRIEDASEYEVGQELTAEVFEDGAYVDV 113
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +GF G MKR GF G A+HG HRR G I A RV+ G
Sbjct: 114 TGTSKGKGFAGTMKRHGFAGQGASHGTQAVHRRPGSIGGCATPGRVFKG 162
>gi|73667228|ref|YP_303244.1| 50S ribosomal protein L3 [Ehrlichia canis str. Jake]
gi|109893428|sp|Q3YRK9.1|RL3_EHRCJ RecName: Full=50S ribosomal protein L3
gi|72394369|gb|AAZ68646.1| LSU ribosomal protein L3P [Ehrlichia canis str. Jake]
Length = 231
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 17/174 (9%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
+KR GL + +G ++ G++ TL+ + D+ II K G
Sbjct: 2 AKRIGLFLEKVGHTAIFDNEGKRIPVTLLHLRDSFIIS--------TKTKDING-----Y 48
Query: 175 GCLLVGAESGDPSLYTKE-YCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPR 233
+++G ES S+ K+ + + S + K ++ + + G ++ HF
Sbjct: 49 NAVVLGVES---SVNIKKPQLKILEKSNITAKCRIFESRVDNLDGIVKGAKISITHFVEN 105
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+++DV G ++ +GF GVMKR FKG+ A+HGV+ +HR G RVY G
Sbjct: 106 QYIDVTGYSLGKGFAGVMKRHNFKGLKASHGVSIAHRSQGSTGQCQDPGRVYKG 159
>gi|373458301|ref|ZP_09550068.1| 50S ribosomal protein L3 [Caldithrix abyssi DSM 13497]
gi|371719965|gb|EHO41736.1| 50S ribosomal protein L3 [Caldithrix abyssi DSM 13497]
Length = 206
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 50/98 (51%)
Query: 190 TKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQG 249
TK G FK +GV PK+ L F D L G + +P F+ V G T +GFQG
Sbjct: 61 TKPLLGHFKKAGVKPKRHLVEFDFGADHGLKVGDEIKVDVLKPGSFVKVSGKTKGKGFQG 120
Query: 250 VMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V+KR GF G P THG + R G I + +RV+ G
Sbjct: 121 VVKRHGFGGGPKTHGQSDRLRAPGSIGQSSYPSRVFKG 158
>gi|225678845|gb|EEH17129.1| 50S ribosomal protein L3 [Paracoccidioides brasiliensis Pb03]
Length = 295
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 190 TKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPREFLDVRGLTVDRGFQ 248
T+ G F +GV PK+ + F + ++ +LP G + A F+ +F+D R + GF+
Sbjct: 134 TRPMLGHFAANGVAPKRHIHEFRVKDESGLLPIGEVINADWFQEGQFVDARSNSRGMGFE 193
Query: 249 GVMKRWGFKGMPATHGVTKSHRRGGCIA-SGAGKARVYPG 287
GVMKR GF G +HGV+ +HR G S G +RV+PG
Sbjct: 194 GVMKRHGFHGQDRSHGVSLAHRSLGSAGPSQGGGSRVHPG 233
>gi|404379467|ref|ZP_10984524.1| 50S ribosomal protein L3 [Simonsiella muelleri ATCC 29453]
gi|294482964|gb|EFG30652.1| 50S ribosomal protein L3 [Simonsiella muelleri ATCC 29453]
Length = 215
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 19/173 (10%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
GL+G+ +G ++ + GE T++++ N + +K + + + + GE K
Sbjct: 4 GLVGRKVGMTRIFTEQGESIPVTVLEMSTNRVTQVKSKETDGYTAVQVTF-GEKK----- 57
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD--AMLPPGTPLTAAHFRPRE 234
+ TK G F +GV + L F+++ + A L G LT F+ +
Sbjct: 58 ---------ANRVTKPEAGHFAKAGVEAGRGLHEFVVSEEKAAELKAGNVLTVELFQAGQ 108
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G + +GF G +KR F +HG ++SHR G I RV+PG
Sbjct: 109 LVDVTGTSKGKGFSGTIKRHNFGAQRTSHGNSRSHRVPGSIGMAQDPGRVFPG 161
>gi|302877801|ref|YP_003846365.1| 50S ribosomal protein L3 [Gallionella capsiferriformans ES-2]
gi|302580590|gb|ADL54601.1| 50S ribosomal protein L3 [Gallionella capsiferriformans ES-2]
Length = 214
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 19/173 (10%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
GL+G+ IG ++ ++G T+++V +N + +K + + + + + ++
Sbjct: 4 GLVGRKIGMTRVFTEDGSSLPVTVLEVSNNRVTQVKSVAVDGYTAVQVAHGVRRATRV-- 61
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAM--LPPGTPLTAAHFRPRE 234
+K G + +GV L FI+TP+ + L G+ ++ F+ +
Sbjct: 62 -------------SKAAAGHYAKAGVEAGSALKEFIVTPEQLDGLALGSSISVEIFQVGQ 108
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G T +G+ G +KR FK A+HG +KSH G I RV+PG
Sbjct: 109 LVDVTGTTKGKGYAGTIKRHHFKSGRASHGNSKSHNVPGSIGMAQDPGRVFPG 161
>gi|407451742|ref|YP_006723466.1| 50S ribosomal protein L3 [Riemerella anatipestifer RA-CH-1]
gi|403312726|gb|AFR35567.1| Ribosomal protein L3 [Riemerella anatipestifer RA-CH-1]
Length = 207
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 15/171 (8%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
+G+IGK IG L+ ++G+ T++Q +++ E + Y G
Sbjct: 2 SGIIGKKIGMTSLFDESGKNIPCTVIQAGPCSVLQVRTVE-----KDGYVG--------Y 48
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
+G + K G FK +G PK KL F D L G +T F E++D
Sbjct: 49 QLGFDDKSEKNVGKALAGHFKKAGSTPKAKLHEFHHGFDN-LQVGDEVTVKLFAEGEYVD 107
Query: 238 VRGLTVDRGFQGVMKRWGFKG-MPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G + +GFQGV+KR GF G M ATHG R G I +G+ +RV+ G
Sbjct: 108 VTGTSKGKGFQGVVKRHGFGGVMQATHGQHNRLRAPGSIGAGSDPSRVFKG 158
>gi|261211151|ref|ZP_05925440.1| LSU ribosomal protein L3p (L3e) [Vibrio sp. RC341]
gi|262166617|ref|ZP_06034354.1| LSU ribosomal protein L3p (L3e) [Vibrio mimicus VM223]
gi|262170467|ref|ZP_06038145.1| LSU ribosomal protein L3p (L3e) [Vibrio mimicus MB-451]
gi|262401883|ref|ZP_06078448.1| LSU ribosomal protein L3p (L3e) [Vibrio sp. RC586]
gi|449144166|ref|ZP_21774982.1| 50S ribosomal protein L3 [Vibrio mimicus CAIM 602]
gi|260839652|gb|EEX66263.1| LSU ribosomal protein L3p (L3e) [Vibrio sp. RC341]
gi|261891543|gb|EEY37529.1| LSU ribosomal protein L3p (L3e) [Vibrio mimicus MB-451]
gi|262026333|gb|EEY45001.1| LSU ribosomal protein L3p (L3e) [Vibrio mimicus VM223]
gi|262351855|gb|EEZ00986.1| LSU ribosomal protein L3p (L3e) [Vibrio sp. RC586]
gi|449080102|gb|EMB51020.1| 50S ribosomal protein L3 [Vibrio mimicus CAIM 602]
Length = 209
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 17/171 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
GLIG+ +G ++ ++G T+V+V N + +K + + +
Sbjct: 3 GLIGRKVGMTRVFTEDGVSIPVTVVEVEANRVSQVKTLETDGY---------------AA 47
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ V A S + TK G F +GV + L F + G+ LT F + +
Sbjct: 48 IQVTAGSKKANRVTKPEAGHFAKAGVEAGRGLWEFRLENGEEFAVGSELTVELFNEVKKV 107
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G + +GFQG +KRW F+ THG + SHR G I RV+ G
Sbjct: 108 DVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKG 158
>gi|332139848|ref|YP_004425586.1| 50S ribosomal protein L3 [Alteromonas macleodii str. 'Deep
ecotype']
gi|332139861|ref|YP_004425599.1| 50S ribosomal protein L3 [Alteromonas macleodii str. 'Deep
ecotype']
gi|410860053|ref|YP_006975287.1| 50S ribosomal protein L3 [Alteromonas macleodii AltDE1]
gi|226725125|sp|B4RZN2.1|RL3_ALTMD RecName: Full=50S ribosomal protein L3
gi|327549870|gb|AEA96588.1| 50S ribosomal protein L3 [Alteromonas macleodii str. 'Deep
ecotype']
gi|327549883|gb|AEA96601.1| 50S ribosomal protein L3 [Alteromonas macleodii str. 'Deep
ecotype']
gi|410817315|gb|AFV83932.1| 50S ribosomal protein L3 [Alteromonas macleodii AltDE1]
gi|452097196|gb|AGF95403.1| 50S ribosomal protein L3 [uncultured Alteromonas sp.]
Length = 212
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 15/171 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G+ +G ++ ++G T+++ N + + E YR L
Sbjct: 4 GLVGRKVGMTRIFTEDGTSIPVTVIEATPNRVTQLRTEES-----DGYR--------ALQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD--AMLPPGTPLTAAHFRPREFL 236
V A + + K G F +GV + L F + + A + G+ +T F + +
Sbjct: 51 VTAGTKKANRINKAEAGHFAKAGVEAGRTLVEFRLEENEGADIEVGSEITVEIFNDTKKI 110
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G + +GFQG +KRW F THG + SHR G I +V+ G
Sbjct: 111 DVTGTSKGKGFQGAIKRWNFSSQRMTHGNSLSHRAPGSIGQNQSPGKVFKG 161
>gi|254483423|ref|ZP_05096652.1| ribosomal protein L3 [marine gamma proteobacterium HTCC2148]
gi|214036297|gb|EEB76975.1| ribosomal protein L3 [marine gamma proteobacterium HTCC2148]
Length = 211
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G+ G ++ ++G T+V+V N + + +E + + YR +
Sbjct: 4 GLVGRKSGMTRVFTEDGASIPVTVVEVSPNRVTQI---KELETD--GYR--------AIQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPP-GTPLTAAHFRPREFLD 237
V + S +K G F +GV KL F + P G LT F + +D
Sbjct: 51 VTTGNRKASKVSKSEAGHFAKAGVEAGTKLSEFRLEASDEAPEVGVELTVERFEVGQIVD 110
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G + +GFQG +KRW F ATHG + SHR G I RV+ G
Sbjct: 111 VTGKSKGKGFQGGIKRWNFTMQDATHGNSISHRANGSIGQCQTPGRVFKG 160
>gi|108797986|ref|YP_638183.1| 50S ribosomal protein L3 [Mycobacterium sp. MCS]
gi|119867082|ref|YP_937034.1| 50S ribosomal protein L3 [Mycobacterium sp. KMS]
gi|126433648|ref|YP_001069339.1| 50S ribosomal protein L3 [Mycobacterium sp. JLS]
gi|123070590|sp|Q1BDA7.1|RL3_MYCSS RecName: Full=50S ribosomal protein L3
gi|166233164|sp|A3PVC1.1|RL3_MYCSJ RecName: Full=50S ribosomal protein L3
gi|166233165|sp|A1UBN6.1|RL3_MYCSK RecName: Full=50S ribosomal protein L3
gi|108768405|gb|ABG07127.1| LSU ribosomal protein L3P [Mycobacterium sp. MCS]
gi|119693171|gb|ABL90244.1| LSU ribosomal protein L3P [Mycobacterium sp. KMS]
gi|126233448|gb|ABN96848.1| LSU ribosomal protein L3P [Mycobacterium sp. JLS]
Length = 217
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 16/174 (9%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R G++G +G ++ +N + T+V+ N + + PE R Y
Sbjct: 3 RKGILGTKLGMTQVFDENNKVVPVTVVKAGPNVVTRIRTPE-----RDGYS--------A 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPP---GTPLTAAHFRPR 233
+ + P K G F +GV P++ L + ++ G LTA F
Sbjct: 50 VQIAYGEISPRKVNKPVTGQFAAAGVNPRRHLAELRLDDESAAADYEVGQELTAEVFSDG 109
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
++DV G + +GF G MKR GFKG A HG HRR G I A RV+ G
Sbjct: 110 AYVDVTGTSKGKGFAGTMKRHGFKGQGAAHGAQAVHRRPGSIGGCATPGRVFKG 163
>gi|317503980|ref|ZP_07961988.1| 50S ribosomal protein L3 [Prevotella salivae DSM 15606]
gi|315665006|gb|EFV04665.1| 50S ribosomal protein L3 [Prevotella salivae DSM 15606]
Length = 204
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLIGK IG ++ +G+ T+++ ++ + EE + Y+ L
Sbjct: 3 GLIGKKIGMTSVFSADGKNVPCTVIEA-GPCVVTQVKTEE----KDGYK--------ALQ 49
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+G E + +K G FK +G PKK L F + L G LT F +F+D+
Sbjct: 50 LGFEEAKENRTSKPMMGTFKKAGTTPKKHLAEFKFNEEYNL--GDTLTVEIFSDAKFVDI 107
Query: 239 RGLTVDRGFQGVMKRWGFKGM-PATHGVTKSHRRGGCIASGAGKARVY 285
G + +GFQGV+KR GF G+ +THG R+ G I + + A+V+
Sbjct: 108 VGTSKGKGFQGVVKRHGFGGVGQSTHGQDDRARKPGSIGACSYPAKVF 155
>gi|448747890|ref|ZP_21729542.1| Ribosomal protein L3, bacterial/organelle-type [Halomonas titanicae
BH1]
gi|445564538|gb|ELY20657.1| Ribosomal protein L3, bacterial/organelle-type [Halomonas titanicae
BH1]
Length = 212
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 18/172 (10%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
GL+GK G ++ ++G T+++V N + +K + + +
Sbjct: 4 GLVGKKAGMTRVFTEDGASVPVTVIEVDPNRVTRVKSVESDGYA---------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPP-GTPLTAAHFRPREF 235
+ V + S TK G F +GV + L F + +P G LT + F +
Sbjct: 49 IQVTSGSRKAKHLTKAQAGQFAKAGVEAGRALMEFRLAEGEEIPEVGGELTVSLFEAGQM 108
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G + +GFQG +KRW F+ THG + SHR G I RV+ G
Sbjct: 109 VDVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGMCQTPGRVFKG 160
>gi|345870974|ref|ZP_08822923.1| 50S ribosomal protein L3 [Thiorhodococcus drewsii AZ1]
gi|343921128|gb|EGV31852.1| 50S ribosomal protein L3 [Thiorhodococcus drewsii AZ1]
Length = 216
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 76/171 (44%), Gaps = 15/171 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
G+IG+ G L+ + GE T+++V NHI + E +
Sbjct: 4 GVIGRKAGMTRLFTETGESVPVTVIEVTPNHISQVKSAE-------------TDGYCAIQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD--AMLPPGTPLTAAHFRPREFL 236
V + S TK G + +GV + L F + + A L G ++ + F P + +
Sbjct: 51 VAFGARRASRVTKPMAGHYAKAGVEAGEVLKEFRLEGEEGADLQVGQEISVSIFEPGQKV 110
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DVRG+T RGF GV++R F G THG + SHR G I RV+ G
Sbjct: 111 DVRGVTKGRGFAGVIRRHHFAGQDRTHGNSLSHRAPGSIGQNQTPGRVWKG 161
>gi|334365470|ref|ZP_08514423.1| 50S ribosomal protein L3 [Alistipes sp. HGB5]
gi|390946959|ref|YP_006410719.1| 50S ribosomal protein L3 [Alistipes finegoldii DSM 17242]
gi|313158234|gb|EFR57636.1| 50S ribosomal protein L3 [Alistipes sp. HGB5]
gi|390423528|gb|AFL78034.1| LSU ribosomal protein L3P [Alistipes finegoldii DSM 17242]
Length = 204
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 24/175 (13%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQ----VVDNHIIKYIPPEEFKPNRKPYRGEPKRK 173
+GLIGK IG ++ G+ T+++ VV IK + + ++ + Y + ++
Sbjct: 2 SGLIGKKIGMTSVYSAEGKNIPCTVIEAGPCVVTQ--IKTVEKDTYEAVQIAYDEKSEKH 59
Query: 174 LGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPR 233
L+G FK +G PK+K+ F P+ L G LT F
Sbjct: 60 TSSSLLGH---------------FKKAGTTPKRKMAEFKGMPEVNL--GDTLTVELFSEE 102
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPA-THGVTKSHRRGGCIASGAGKARVYPG 287
+++DV G++ +GFQGV+KR GF G+ THG R+ G + + + +RV+ G
Sbjct: 103 DWVDVTGISKGKGFQGVVKRHGFGGVGGQTHGQHNRQRKPGSLGASSYPSRVFKG 157
>gi|258625740|ref|ZP_05720619.1| 50S ribosomal protein L3 [Vibrio mimicus VM603]
gi|258581978|gb|EEW06848.1| 50S ribosomal protein L3 [Vibrio mimicus VM603]
Length = 209
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 17/171 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
GLIG+ +G ++ ++G T+V+V N + +K + + +
Sbjct: 3 GLIGRKVGMTRVFTEDGVSIPVTVVEVEANRVSQVKTLETDGY---------------AA 47
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ V A S + TK G F +GV + L F + G+ LT F + +
Sbjct: 48 IQVTAGSKKANRVTKPEAGHFAKAGVEAGRGLWEFRLENGEEFAVGSELTVELFSEVKKV 107
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G + +GFQG +KRW F+ THG + SHR G I RV+ G
Sbjct: 108 DVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKG 158
>gi|298207727|ref|YP_003715906.1| 50S ribosomal protein L3 [Croceibacter atlanticus HTCC2559]
gi|83850364|gb|EAP88232.1| 50S ribosomal protein L3 [Croceibacter atlanticus HTCC2559]
Length = 205
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 15/171 (8%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
+GLIGK IG ++ +NG+ T++Q ++ + E + L
Sbjct: 2 SGLIGKKIGMTSIFDENGKNIPCTVIQA-GPCVVTQVRTSEVDGYK------------AL 48
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
+G + + G FK +G PK K+ F D G +T F+ EF+D
Sbjct: 49 QLGFDDKADKRASNAAVGHFKKAGTSPKYKVAEFKKFEDD-FNLGDSVTVEMFKEGEFVD 107
Query: 238 VRGLTVDRGFQGVMKRWGFKGM-PATHGVTKSHRRGGCIASGAGKARVYPG 287
V G + +GFQGV+KR GF G+ ATHG R G I + + ARV+ G
Sbjct: 108 VSGTSKGKGFQGVVKRHGFGGVGQATHGQHNRLRAPGSIGAASYPARVFKG 158
>gi|269958584|ref|YP_003328371.1| 50S ribosomal protein L3 [Anaplasma centrale str. Israel]
gi|269848413|gb|ACZ49057.1| 50S ribosomal protein L3 [Anaplasma centrale str. Israel]
Length = 232
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 15/184 (8%)
Query: 113 TSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKR 172
+ R GL+ K IG ++ +G + TL+ + D +++ R+ G
Sbjct: 2 ATGSRVGLLMKKIGNTAVFGDSGARVPVTLLLLEDTLVVEV--------KRRDVHGYDAV 53
Query: 173 KLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRP 232
LG G L + C L K G+ L + + PG+ ++ HF
Sbjct: 54 VLGVRRPG------RLNKPQVCALRKK-GIDVDCHLFESRVDAVDGIEPGSRISVDHFFQ 106
Query: 233 REFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQR 292
+F+DV G ++ RGF GVMKR F+G+ A+HGV+ SHR G RV+ G +
Sbjct: 107 GQFVDVAGRSIGRGFAGVMKRHNFRGLRASHGVSISHRSQGSTGQCQDPGRVFKGKKMAG 166
Query: 293 GLKC 296
+ C
Sbjct: 167 HMGC 170
>gi|297623274|ref|YP_003704708.1| 50S ribosomal protein L3 [Truepera radiovictrix DSM 17093]
gi|297164454|gb|ADI14165.1| 50S ribosomal protein L3 [Truepera radiovictrix DSM 17093]
Length = 206
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 188 LYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGF 247
+ TK G K +GV ++ L F P G +T F+P + +DV G + RG
Sbjct: 58 VATKPELGHAKKAGVSAQRHLVEF----RDYDPEGDTVTVEIFKPGQKVDVTGTSKGRGT 113
Query: 248 QGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GVMKRW F G+PA+HGV K HR G I RVY G
Sbjct: 114 AGVMKRWNFAGLPASHGVKKKHRAPGSIGQRKFPGRVYKG 153
>gi|453366417|dbj|GAC78192.1| 50S ribosomal protein L3 [Gordonia malaquae NBRC 108250]
Length = 218
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 51/103 (49%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP TK G F +GV P++ L + + G L A F +DV G +
Sbjct: 62 DPRKVTKPVAGQFAKAGVTPRRHLTELRVNDISEFEVGQELGADIFADGIKVDVTGTSKG 121
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GF GVMKR GF G+ A+HGV + HR G I A RV+ G
Sbjct: 122 KGFAGVMKRHGFAGLGASHGVHRVHRSPGSIGGCATPGRVFKG 164
>gi|403723480|ref|ZP_10945635.1| 50S ribosomal protein L3 [Gordonia rhizosphera NBRC 16068]
gi|403205996|dbj|GAB89966.1| 50S ribosomal protein L3 [Gordonia rhizosphera NBRC 16068]
Length = 225
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 51/103 (49%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP TK G + +GV P++ L + + G LTA F +DV G +
Sbjct: 68 DPRKVTKPVAGQYAKAGVTPRRHLTEIRVADVSEFEVGQELTAEIFADGAKVDVTGTSKG 127
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GF GVMKR GF G+ A+HG + HR G I A RV+ G
Sbjct: 128 KGFAGVMKRHGFAGLGASHGAHRVHRAPGSIGGCATPGRVFKG 170
>gi|89076770|ref|ZP_01163043.1| 50S ribosomal protein L3 [Photobacterium sp. SKA34]
gi|90581758|ref|ZP_01237542.1| 50S ribosomal protein L3 [Photobacterium angustum S14]
gi|89047583|gb|EAR53197.1| 50S ribosomal protein L3 [Photobacterium sp. SKA34]
gi|90437056|gb|EAS62263.1| 50S ribosomal protein L3 [Vibrio angustum S14]
Length = 209
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 72/169 (42%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLIG+ +G ++ ++G T+V+V +N + + E N +
Sbjct: 3 GLIGRKVGMTRIFTEDGISIPVTVVEVENNRVTQVKSVETDGYN-------------AIQ 49
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
V A + S +K G F +GV + L F + G L F + +DV
Sbjct: 50 VTAGTKKASRVSKPEAGHFAKAGVEAGRGLWEFRLENSEEFAVGAELNVELFNDIKKVDV 109
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +GFQG +KRW F+ THG + SHR G I RV+ G
Sbjct: 110 TGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKG 158
>gi|34499641|ref|NP_903856.1| 50S ribosomal protein L3 [Chromobacterium violaceum ATCC 12472]
gi|42559595|sp|Q7NQF2.1|RL3_CHRVO RecName: Full=50S ribosomal protein L3
gi|34105491|gb|AAQ61846.1| 50S ribosomal protein L3 [Chromobacterium violaceum ATCC 12472]
Length = 214
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 15/171 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G+ +G ++ ++G T++ + N + + E N +
Sbjct: 4 GLVGRKVGMTRIFAEDGATIPVTVLDMSSNRVTQIKTAETDGYN-------------AVQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAM--LPPGTPLTAAHFRPREFL 236
V S S K G F +GV L F ++ DA+ PG + F + +
Sbjct: 51 VTYGSKKASRVNKADAGHFAKAGVEAGLGLAEFALSADALSNFKPGDAIAVEIFTVGQLV 110
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G + +GF GV+KR F A+HG ++SH G I RV+PG
Sbjct: 111 DVTGTSKGKGFSGVIKRHNFSSNRASHGNSRSHNTPGSIGQAQDPGRVFPG 161
>gi|281423839|ref|ZP_06254752.1| 50S ribosomal protein L3 [Prevotella oris F0302]
gi|299141147|ref|ZP_07034284.1| 50S ribosomal protein L3 [Prevotella oris C735]
gi|281402066|gb|EFB32897.1| 50S ribosomal protein L3 [Prevotella oris F0302]
gi|298577107|gb|EFI48976.1| 50S ribosomal protein L3 [Prevotella oris C735]
Length = 204
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 16/170 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLIGK IG ++ +G+ T+++ ++ + EE + Y+ L
Sbjct: 3 GLIGKKIGMTSVFSADGKNVPCTVIEA-GPCVVTQVKTEE----KDGYK--------ALQ 49
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+G E + +K G FK +G PKK L F + L G +T F +F+D+
Sbjct: 50 LGFEEAKENRTSKPMMGTFKKAGTTPKKHLAEFKFDEEHNL--GDTITVELFADAKFVDI 107
Query: 239 RGLTVDRGFQGVMKRWGFKGM-PATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +GFQGV+KR GF G+ +THG R+ G I + + A+V+ G
Sbjct: 108 VGTSKGKGFQGVVKRHGFGGVGQSTHGQDDRARKPGSIGACSYPAKVFKG 157
>gi|91774635|ref|YP_544391.1| 50S ribosomal protein L3 [Methylobacillus flagellatus KT]
gi|122985649|sp|Q1H4N7.1|RL3_METFK RecName: Full=50S ribosomal protein L3
gi|91708622|gb|ABE48550.1| LSU ribosomal protein L3P [Methylobacillus flagellatus KT]
Length = 214
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 19/173 (10%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
GLIG+ +G ++ GE T+++VV N + IK + + + Y ++G
Sbjct: 4 GLIGRKVGMTRIFTDEGESVPVTVLEVVPNRVTQIKTAASDGYTSLQVAYGERRASRIG- 62
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAML--PPGTPLTAAHFRPRE 234
K G + +GV + F ++ D + G +T F+P +
Sbjct: 63 --------------KALAGHYAKAGVSAGAGIKEFPVSDDVLANYSVGGQITVELFQPGQ 108
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G ++ +GF G +KR F A+HG ++SH G I RV+PG
Sbjct: 109 LVDVTGTSLGKGFSGAIKRHNFSSNRASHGNSRSHNVPGSIGMAQDPGRVFPG 161
>gi|288929340|ref|ZP_06423185.1| 50S ribosomal protein L3 [Prevotella sp. oral taxon 317 str. F0108]
gi|288329442|gb|EFC68028.1| 50S ribosomal protein L3 [Prevotella sp. oral taxon 317 str. F0108]
Length = 204
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 24/172 (13%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQ----VVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
GLIG+ IG ++ +G+ T+++ VV +K + + +K + Y GE K+
Sbjct: 3 GLIGRKIGMTSVFSADGKNVPCTVIEAGPCVVTQ--VKTVETDGYKAVQLAY-GEAKK-- 57
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
+ TK G+F+ +G PKK L F + L G +T F E
Sbjct: 58 ------------NRTTKAMAGIFEKAGTTPKKHLAEFKFDTEYNL--GDTITVDLFEGAE 103
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGM-PATHGVTKSHRRGGCIASGAGKARVY 285
F+DV G + +GFQGV+KR GF G+ THG R+ G I + + A+V+
Sbjct: 104 FVDVVGTSKGKGFQGVVKRHGFGGVGQTTHGQDDRARKPGSIGACSYPAKVF 155
>gi|260770913|ref|ZP_05879842.1| LSU ribosomal protein L3p (L3e) [Vibrio furnissii CIP 102972]
gi|375129787|ref|YP_004991885.1| 50S ribosomal protein L3 [Vibrio furnissii NCTC 11218]
gi|260614150|gb|EEX39340.1| LSU ribosomal protein L3p (L3e) [Vibrio furnissii CIP 102972]
gi|315178959|gb|ADT85873.1| 50S ribosomal protein L3 [Vibrio furnissii NCTC 11218]
Length = 209
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 17/171 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
GLIG+ +G ++ ++G T+V+V N + +K + + +
Sbjct: 3 GLIGRKVGMTRVFTEDGVSIPVTVVEVEANRVSQVKTLETDGY---------------AA 47
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ V A S + K G F +GV + L F + G+ LT F + +
Sbjct: 48 IQVTAGSKKANRVNKAEAGHFAKAGVEAGRGLWEFRLENGEEFEVGSELTVELFNETKKV 107
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G + +GFQG +KRW F+ THG + SHR G I RV+ G
Sbjct: 108 DVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKG 158
>gi|268593541|ref|ZP_06127762.1| 50S ribosomal protein L3 [Providencia rettgeri DSM 1131]
gi|422007033|ref|ZP_16354020.1| 50S ribosomal protein L3 [Providencia rettgeri Dmel1]
gi|291310819|gb|EFE51272.1| 50S ribosomal protein L3 [Providencia rettgeri DSM 1131]
gi|414097879|gb|EKT59531.1| 50S ribosomal protein L3 [Providencia rettgeri Dmel1]
Length = 209
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+GK +G ++ ++G T++++ +N + + E N +
Sbjct: 3 GLVGKKVGMTRIFTEDGVSIPVTVIEIENNRVTQVKTAETDGYN-------------AIQ 49
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
V S + TK G F +GV + L F I A G ++ F + +DV
Sbjct: 50 VTTGSKKANRVTKPEAGHFAKAGVEAGRILREFRIEDSAEYTVGQSISVEIFADVKKVDV 109
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +GF G +KRW F+ ATHG + SHR G I +V+ G
Sbjct: 110 TGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKG 158
>gi|54022700|ref|YP_116942.1| 50S ribosomal protein L3 [Nocardia farcinica IFM 10152]
gi|81823259|sp|Q5Z1W3.1|RL3_NOCFA RecName: Full=50S ribosomal protein L3
gi|54014208|dbj|BAD55578.1| putative ribosomal protein L3 [Nocardia farcinica IFM 10152]
Length = 221
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP K G F +GV P++ + + + G + A F ++DV G +
Sbjct: 64 DPRKVNKPVAGQFAKAGVTPRRHIAEIRVADASSFEVGQEINADVFEEGSYVDVTGTSKG 123
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+G+ G MKR GF+G A+HG HRR G I A RV+ G
Sbjct: 124 KGYAGTMKRHGFRGQGASHGAQAVHRRPGSIGGCATPGRVFKG 166
>gi|406595273|ref|YP_006746403.1| 50S ribosomal protein L3 [Alteromonas macleodii ATCC 27126]
gi|407682202|ref|YP_006797376.1| 50S ribosomal protein L3 [Alteromonas macleodii str. 'English
Channel 673']
gi|407686122|ref|YP_006801295.1| 50S ribosomal protein L3 [Alteromonas macleodii str. 'Balearic Sea
AD45']
gi|407698604|ref|YP_006823391.1| 50S ribosomal protein L3 [Alteromonas macleodii str. 'Black Sea
11']
gi|406372594|gb|AFS35849.1| 50S ribosomal protein L3 [Alteromonas macleodii ATCC 27126]
gi|407243813|gb|AFT72999.1| 50S ribosomal protein L3 [Alteromonas macleodii str. 'English
Channel 673']
gi|407247751|gb|AFT76936.1| 50S ribosomal protein L3 [Alteromonas macleodii str. 'Black Sea
11']
gi|407289502|gb|AFT93814.1| 50S ribosomal protein L3 [Alteromonas macleodii str. 'Balearic Sea
AD45']
Length = 212
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 15/171 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G+ +G ++ ++G T+++ N + + E YR L
Sbjct: 4 GLVGRKVGMTRIFTEDGTSIPVTVIEATPNRVTQLRTEET-----DGYR--------ALQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD--AMLPPGTPLTAAHFRPREFL 236
V A + + K G F +GV + L F + + A + G+ +T F + +
Sbjct: 51 VTAGTKKANRINKAEAGHFAKAGVEAGRTLVEFRLEENEGADIEVGSEITVEIFNDTKKI 110
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G + +GFQG +KRW F THG + SHR G I +V+ G
Sbjct: 111 DVTGTSKGKGFQGAIKRWNFSSQRMTHGNSLSHRAPGSIGQNQSPGKVFKG 161
>gi|256380598|ref|YP_003104258.1| 50S ribosomal protein L3 [Actinosynnema mirum DSM 43827]
gi|255924901|gb|ACU40412.1| ribosomal protein L3 [Actinosynnema mirum DSM 43827]
Length = 216
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 50/103 (48%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP K G F +GV P++ L T + G +TA F +DV G +
Sbjct: 61 DPRKVIKPVAGHFAKAGVTPRRHLAELRTTDASEYQVGQEITAEVFEAGAVVDVVGTSRG 120
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+G+ GVMKR GF G+ A+HG + HR G I A RV+ G
Sbjct: 121 KGYAGVMKRHGFAGLGASHGTQRKHRSPGSIGGCATPGRVFKG 163
>gi|397670939|ref|YP_006512474.1| 50S ribosomal protein L3 [Propionibacterium propionicum F0230a]
gi|395141743|gb|AFN45850.1| 50S ribosomal protein L3 [Propionibacterium propionicum F0230a]
Length = 220
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
G++G +G LW +N + T++Q + + PE+ G +LG
Sbjct: 10 GILGTKLGMTQLWDENNKVVPVTVIQAGPCVVTQVRTPEK--------DGYNAVQLGFGA 61
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+ + TK G F +GV P++ L + G LTA F E +DV
Sbjct: 62 IASRK-----VTKPTQGHFDKAGVTPRRHLLELRTANASEFTLGQELTAELFAGGEVVDV 116
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G T +G GVMKR GF G+ +HGV + HR G I + RV+ G
Sbjct: 117 TGTTKGKGTAGVMKRHGFGGLKGSHGVHRKHRAPGSIGGCSTPGRVFKG 165
>gi|297621720|ref|YP_003709857.1| 50S ribosomal protein L3 [Waddlia chondrophila WSU 86-1044]
gi|297377021|gb|ADI38851.1| 50S ribosomal protein L3 [Waddlia chondrophila WSU 86-1044]
Length = 220
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%)
Query: 195 GLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRW 254
G FK +GV P++ + ++ G F +F+D +++ +GFQG MK
Sbjct: 74 GHFKKAGVEPRRHMLESRLSDVTGYQVGQEFDVTAFNEVKFIDATAISIGKGFQGAMKLH 133
Query: 255 GFKGMPATHGVTKSHRRGGCIASGAGKARVYPGG 288
GF GMPA+HG K+HR G + R +PGG
Sbjct: 134 GFSGMPASHGAKKNHRSLGSTGGRSTPGRCFPGG 167
>gi|225020386|ref|ZP_03709578.1| hypothetical protein CORMATOL_00393 [Corynebacterium matruchotii
ATCC 33806]
gi|305680123|ref|ZP_07402933.1| 50S ribosomal protein L3 [Corynebacterium matruchotii ATCC 14266]
gi|224946775|gb|EEG27984.1| hypothetical protein CORMATOL_00393 [Corynebacterium matruchotii
ATCC 33806]
gi|305660743|gb|EFM50240.1| 50S ribosomal protein L3 [Corynebacterium matruchotii ATCC 14266]
Length = 218
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 51/103 (49%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP K G F +GV P++ + + + G +TA F F+DV G+T
Sbjct: 61 DPRKVKKPQAGHFNKAGVTPRRHVAEIRMDDVSGYELGQEITANIFDGITFVDVTGITKG 120
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GF G MKR GF G A HG SHRR G I + A RV+ G
Sbjct: 121 KGFAGGMKRHGFAGQGAGHGNQASHRRVGGIGACATPGRVFKG 163
>gi|304310016|ref|YP_003809614.1| 50S ribosomal protein L3 [gamma proteobacterium HdN1]
gi|301795749|emb|CBL43948.1| 50S ribosomal protein L3 [gamma proteobacterium HdN1]
Length = 212
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
GL+GK G ++ ++G T+++V N + IK + +R Y
Sbjct: 4 GLVGKKCGMTRIFNEDGSSTSVTVIEVDPNRVTLIKSV-------DRDGYS--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA--MLPPGTPLTAAHFRPRE 234
+ V S K GLF +GV L F DA L G + + F +
Sbjct: 49 VQVTTGVRKASTVNKAEAGLFSKAGVEAGSGLWEFRFPDDAAITLSVGDSVGVSIFEAGQ 108
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G++ +GF GV+KRW F+ ATHG + SHR G I RV+ G
Sbjct: 109 AVDVTGVSKGKGFAGVVKRWNFRTQDATHGNSLSHRAPGSIGQRQTPGRVFKG 161
>gi|71278595|ref|YP_267622.1| 50S ribosomal protein L3 [Colwellia psychrerythraea 34H]
gi|109893422|sp|Q487Z3.1|RL3_COLP3 RecName: Full=50S ribosomal protein L3
gi|71144335|gb|AAZ24808.1| ribosomal protein L3 [Colwellia psychrerythraea 34H]
Length = 212
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 19/173 (10%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
GL+G+ +G ++ ++G T+++V N + +K + + +
Sbjct: 4 GLVGRKVGMTRVFTEDGVSTPVTVIEVEANRVAQVKTVDNDGYS---------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD--AMLPPGTPLTAAHFRPRE 234
L V S TK G F +G+ + L F + + + + G+ +T F +
Sbjct: 49 LQVTTGKRKASRVTKPAAGHFAKAGIEAGRGLWEFRLNENEGSDIEAGSEITVEVFNDTK 108
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G + +GFQG +KRW F ATHGV+ SHR G + RV+ G
Sbjct: 109 LVDVTGTSKGKGFQGGIKRWNFTMQHATHGVSLSHRSNGSLGQCQTPGRVFKG 161
>gi|296168557|ref|ZP_06850361.1| 50S ribosomal protein L3 [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896620|gb|EFG76259.1| 50S ribosomal protein L3 [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 217
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 76/174 (43%), Gaps = 16/174 (9%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R G++G +G ++ +N T+V+ N + + PE R Y
Sbjct: 3 RKGILGTKLGMTQVFDENNRIVPVTVVKAGPNVVTRIRTPE-----RDGYSAVQ------ 51
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPP---GTPLTAAHFRPR 233
L G S P K G + +GV P++ L + +A G LTA F
Sbjct: 52 LAYGEIS--PRKVNKPVTGQYSAAGVNPRRHLAELRLDDEAAAGEYEVGQELTAEIFADG 109
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
++DV G + +GF G MKR GF+G A+HG HRR G I A ARV+ G
Sbjct: 110 SYVDVTGTSKGKGFAGTMKRHGFRGQGASHGAQAVHRRPGSIGGCATPARVFKG 163
>gi|171913926|ref|ZP_02929396.1| 50S ribosomal protein L3 [Verrucomicrobium spinosum DSM 4136]
Length = 212
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 15/158 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLIGK +G +++K+G T++ V N +++ + K +
Sbjct: 4 GLIGKKVGMTQVYLKDGSAVAVTVIDVAGNQVVQV-------------KNADKDGYTAVQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
VG + +K FK K + R T G+ L A F E++DV
Sbjct: 51 VGYSEKKENRCSKPELEHFKKHNATAKY-VVREFRTEGEAPEAGSTLGADKFADGEYVDV 109
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIA 276
G T +GF GV+KR+ FKG PA+HG + HRR G I
Sbjct: 110 IGTTKGKGFSGVVKRYNFKGQPASHG-SMMHRRTGSIG 146
>gi|352105703|ref|ZP_08960910.1| 50S ribosomal protein L3 [Halomonas sp. HAL1]
gi|350598280|gb|EHA14402.1| 50S ribosomal protein L3 [Halomonas sp. HAL1]
Length = 212
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 18/172 (10%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
GL+GK G ++ ++G T+++V N + +K + + +
Sbjct: 4 GLVGKKAGMTRVFTEDGASVPVTVIEVDPNRVTRVKSVESDGYA---------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPP-GTPLTAAHFRPREF 235
+ V + S TK G F +GV + L F + +P G +T + F +
Sbjct: 49 IQVTSGSRKAKHLTKAQAGQFAKAGVEAGRALMEFRLAEGETIPEVGGEITVSLFEAGQM 108
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G + +GFQG +KRW F+ THG + SHR G I RV+ G
Sbjct: 109 VDVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGMCQTPGRVFKG 160
>gi|425735735|ref|ZP_18854047.1| 50S ribosomal protein L3 [Brevibacterium casei S18]
gi|425479327|gb|EKU46504.1| 50S ribosomal protein L3 [Brevibacterium casei S18]
Length = 224
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 13/175 (7%)
Query: 113 TSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKR 172
T+ K GL+G +G +W + + T+V N+++ I EE G P
Sbjct: 11 TTRKVKGLLGTKLGMTQVWDEQNKLVPVTVV-ATGNNVVTQIRDEETD-------GYPAV 62
Query: 173 KLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRP 232
++ + DP K G F+ +GV P++ L G L F
Sbjct: 63 QIAFGEI-----DPRKVNKPTAGHFEKAGVTPRRHLVELRTADAGEYSLGQELGVDTFEA 117
Query: 233 REFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV T +G GVMKR GF G+ A+HG ++HR+ G I A RV+ G
Sbjct: 118 GVKVDVTAKTKGKGTAGVMKRHGFAGVGASHGAHRNHRKPGSIGGAATPGRVFKG 172
>gi|226356897|ref|YP_002786637.1| 50S ribosomal protein L3 [Deinococcus deserti VCD115]
gi|226318887|gb|ACO46883.1| putative 50S ribosomal protein L3 [Deinococcus deserti VCD115]
Length = 206
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 194 CGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKR 253
G FK GV P RF+ P G ++ F E +D G + +GFQGVMKR
Sbjct: 64 AGHFKKYGVSP----VRFLREFRNFNPDGDTVSVDIFAEGEKIDATGTSKGKGFQGVMKR 119
Query: 254 WGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
W FKG PA+HG K HRR G I RVY G
Sbjct: 120 WNFKGGPASHGSKKWHRRPGSIGQRKTPGRVYKG 153
>gi|403223683|dbj|BAM41813.1| 50S ribosomal protein L3 [Theileria orientalis strain Shintoku]
Length = 347
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 89/214 (41%), Gaps = 19/214 (8%)
Query: 66 IENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKII 125
+E L R K + D P + E L I P++P+ +++R G++ +
Sbjct: 42 VERLNRFKKPYKSYSYLDSI--PETQFYTEDDFNSLSISPIKPI---WNTRRCGVLAYKV 96
Query: 126 GQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGD 185
G LW G + T+ H+ + + E R K L +G +
Sbjct: 97 GCMSLWDDWGVRHAVTVC-----HVDRCVVLER--------RTIEKHGYEALQLGLGYRN 143
Query: 186 PSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDR 245
+ TK G F G K + F + D +LP G + HF P +++ V G + +
Sbjct: 144 INRQTKPNIGRFIKLGTGSKNHIAEFKCSSDCLLPEGHYFSVRHFTPGQWVFVSGWSKAK 203
Query: 246 GFQGVMKRWGFKGMPATHGVT-KSHRRGGCIASG 278
GF+G M+RW F G +HG K+H G I+ G
Sbjct: 204 GFKGAMRRWHFGGQTQSHGTECKAHSAPGSISQG 237
>gi|429730003|ref|ZP_19264656.1| 50S ribosomal protein L3 [Corynebacterium durum F0235]
gi|429148598|gb|EKX91602.1| 50S ribosomal protein L3 [Corynebacterium durum F0235]
Length = 218
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 52/103 (50%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP K G FK +GV P++ + + + G +T F +F+DV G +
Sbjct: 61 DPRKAKKPQAGHFKKAGVTPRRHMAEIRMDDVSGYEVGQDVTVDIFEGIDFVDVTGTSKG 120
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GF G MKR GF G A+HG +HRR G I + A RV+ G
Sbjct: 121 KGFAGGMKRHGFSGQGASHGNQAAHRRVGGIGACATPGRVFKG 163
>gi|389726048|ref|ZP_10189184.1| 50S ribosomal protein L3 [Rhodanobacter sp. 115]
gi|388441325|gb|EIL97607.1| 50S ribosomal protein L3 [Rhodanobacter sp. 115]
Length = 213
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 16/172 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G+ G L+ ++G TL++ N + + + E +
Sbjct: 4 GLVGRKCGMSRLFTEDGRSIPVTLIEATPNRVTQL-------------KTEDNDGYSAVQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAM--LPPGTPLTAAH-FRPREF 235
V A SL T+ G + + V P + L F ++ D + G + A F +
Sbjct: 51 VAAGVKRASLLTQPLKGHYAKAKVEPGRGLWEFRVSADDLGKYSVGAEIKADDVFSVGQI 110
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G++ +GFQG +KRW FK ATHG + SHR G I RV+PG
Sbjct: 111 VDVAGVSKGKGFQGTIKRWNFKMGDATHGNSLSHRAPGSIGQRQTPGRVFPG 162
>gi|154249817|ref|YP_001410642.1| 50S ribosomal protein L3 [Fervidobacterium nodosum Rt17-B1]
gi|171769379|sp|A7HM52.1|RL3_FERNB RecName: Full=50S ribosomal protein L3
gi|154153753|gb|ABS60985.1| ribosomal protein L3 [Fervidobacterium nodosum Rt17-B1]
Length = 207
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREF 235
+ +G E + TK G+FK + V P + L F + G +T A F+ +
Sbjct: 46 AIQLGFEEVNEKKLTKPMLGVFKKANVKPMRVLKEFRVENVDQYSVGQEITVAIFQEGDK 105
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+D+ G T RG+ G MKRW F+G P HG K HR G + AR++ G
Sbjct: 106 IDITGWTKGRGYSGAMKRWNFQGGPKAHG-AKFHRELGSVGQHTEPARIFKG 156
>gi|115378276|ref|ZP_01465444.1| ribosomal protein L3 [Stigmatella aurantiaca DW4/3-1]
gi|115364718|gb|EAU63785.1| ribosomal protein L3 [Stigmatella aurantiaca DW4/3-1]
Length = 259
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 70/171 (40%), Gaps = 16/171 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLIGK IG ++ G T+V V ++ PE K + +
Sbjct: 39 GLIGKKIGMTQVFNDEGNLVPVTVVDVSTCQVVGKRTPE-------------KDQYSAVT 85
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD--AMLPPGTPLTAAHFRPREFL 236
+G + + G FK + ++ L F +TP+ A G + A F + +
Sbjct: 86 LGFGEIREKVLNQAQRGFFKKNSAALRRHLKEFRVTPEDAAQFNVGDAVKADLFTKGQLV 145
Query: 237 DVRGLTVDRGFQGVMKRWGFKG-MPATHGVTKSHRRGGCIASGAGKARVYP 286
DV G T RGF GVM+RW FKG THG + R G I R YP
Sbjct: 146 DVTGTTKGRGFSGVMRRWSFKGSQTKTHGTHEYQRHPGAIGQRKTPGRTYP 196
>gi|350560741|ref|ZP_08929581.1| 50S ribosomal protein L3 [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349783009|gb|EGZ37292.1| 50S ribosomal protein L3 [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 214
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 15/169 (8%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLIG+ +G ++ ++G T+VQV N +++ + ++ Y +
Sbjct: 4 GLIGRKLGMTRVFTEDGASLPVTVVQVGHNRVVQV-----KRSDQDGYD--------AVQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAM--LPPGTPLTAAHFRPREFL 236
V A + PS +K G + + V P + L F + + + + PG L F + +
Sbjct: 51 VTAGARKPSRVSKPAAGHYAKASVQPGRGLWEFRVDGERVDGMSPGDELGVEVFSEGQLV 110
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
DV + +GFQGV+KR F+ ATHG ++SHR G I RV+
Sbjct: 111 DVTARSKGKGFQGVVKRHNFRMQDATHGNSRSHRAPGSIGQNQTPGRVF 159
>gi|407642012|ref|YP_006805771.1| 50S ribosomal protein L3 [Nocardia brasiliensis ATCC 700358]
gi|407304896|gb|AFT98796.1| 50S ribosomal protein L3 [Nocardia brasiliensis ATCC 700358]
Length = 221
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 48/103 (46%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP K G F +GV P++ + + + G + A F ++DV G +
Sbjct: 64 DPRKVNKPVSGQFAKAGVTPRRHVAEIRVADASTFEVGQEINADVFEEGTYVDVTGTSKG 123
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GF G MKR GF G A+HG HRR G I A RV+ G
Sbjct: 124 KGFAGTMKRHGFAGQGASHGAQAVHRRPGSIGGCATPGRVFKG 166
>gi|342878824|gb|EGU80113.1| hypothetical protein FOXB_09388 [Fusarium oxysporum Fo5176]
Length = 605
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA-MLPPGTPLTAAHFRPRE 234
+ +GA S D T G ++ G+ PK +L F + ++ +LP G + F+ +
Sbjct: 394 AVQIGAGSRDGRNVTSPLLGYYEAKGIAPKAELAEFKVRNESGLLPVGVQILPDWFKKGQ 453
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK-ARVYPG 287
++DV+G + GF G MKR GF G A+HG +K+HR G G +RV PG
Sbjct: 454 YVDVKGRSRGMGFAGGMKRHGFSGQEASHGNSKNHRTIGTTGPSQGSGSRVMPG 507
>gi|262038282|ref|ZP_06011672.1| 50S ribosomal protein L3 [Leptotrichia goodfellowii F0264]
gi|261747749|gb|EEY35198.1| 50S ribosomal protein L3 [Leptotrichia goodfellowii F0264]
Length = 208
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 47/95 (49%)
Query: 194 CGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKR 253
G+FK +G+ PKK L F + G EF+D+ G + +G GVMKR
Sbjct: 62 MGIFKKAGISPKKFLKEFKVAELESFELGQEFKVDVLEGIEFVDIVGTSKGKGTAGVMKR 121
Query: 254 WGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGG 288
F G ATHGV+++HR GG A GA P G
Sbjct: 122 HNFGGNRATHGVSRNHRLGGSNAGGAASNSNVPKG 156
>gi|359405521|ref|ZP_09198283.1| 50S ribosomal protein L3 [Prevotella stercorea DSM 18206]
gi|357558496|gb|EHJ39989.1| 50S ribosomal protein L3 [Prevotella stercorea DSM 18206]
Length = 204
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 24/172 (13%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQ----VVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
GLIGK IG ++ +G+ T+++ VV +K + + +K + Y GE K K
Sbjct: 3 GLIGKKIGMTSVFSADGKNVPCTVIEAGPCVVTQ--VKTVETDGYKAVQLGY-GEAKEKN 59
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
TK G FK +G PKK L F + L G LT F E
Sbjct: 60 --------------TTKPMMGTFKKAGTTPKKHLAEFKFDEEYNL--GDVLTVELFANTE 103
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGM-PATHGVTKSHRRGGCIASGAGKARVY 285
F+D+ G + +GFQGV+KR GF G+ +THG R+ G I + + A+V+
Sbjct: 104 FVDIVGTSKGKGFQGVVKRHGFGGVGQSTHGQDDRARKPGSIGACSYPAKVF 155
>gi|163752917|ref|ZP_02160041.1| 50S ribosomal protein L3 [Kordia algicida OT-1]
gi|161326649|gb|EDP97974.1| 50S ribosomal protein L3 [Kordia algicida OT-1]
Length = 205
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 78/179 (43%), Gaps = 31/179 (17%)
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLV--------QVVDNHIIKYIPPEEFKPNRKPYRGE 169
+GLIGK IG ++ +NG+ T++ QV N + Y
Sbjct: 2 SGLIGKKIGMTSIFDENGKNIPCTVIEAGPCVVTQVRTNEVDGYE--------------- 46
Query: 170 PKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAH 229
L +G + +K G FK +G PK K+ F + G +T H
Sbjct: 47 ------ALQLGFDDKAEKRASKAANGHFKKAGTSPKYKVVEFQGFEEE-YKLGDSITVEH 99
Query: 230 FRPREFLDVRGLTVDRGFQGVMKRWGFKGM-PATHGVTKSHRRGGCIASGAGKARVYPG 287
F EF+DV G + +GFQGV+KR GF G+ ATHG R G I + + ARV+ G
Sbjct: 100 FEEGEFVDVAGTSKGKGFQGVVKRHGFGGVGQATHGQHNRLRAPGSIGAASYPARVFKG 158
>gi|190571546|ref|YP_001975904.1| 50S ribosomal protein L3 [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|190357818|emb|CAQ55274.1| ribosomal protein L3 [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
Length = 240
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 16/175 (9%)
Query: 113 TSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKR 172
S +R GL+ +G ++ N + TL+ + + +II +G+ K
Sbjct: 5 NSLRRIGLLMTNVGHTAMYFDN-SRMAVTLLHLSETYII-------------DIKGQDKC 50
Query: 173 KLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRP 232
+++G +GD K K G+ K KL +T + G + HF
Sbjct: 51 GYNSVILG--TGDLKKIAKPQLEYLKKKGINSKCKLYESRLTDLFGIECGKKVGVNHFVV 108
Query: 233 REFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
++LD+ G ++ +GF GVMKR F G+ A+HGV+ +HR G RV+ G
Sbjct: 109 GQYLDITGYSLGKGFAGVMKRHNFSGLRASHGVSIAHRSQGSTGQCQDPGRVFKG 163
>gi|389795095|ref|ZP_10198230.1| 50S ribosomal protein L3 [Rhodanobacter fulvus Jip2]
gi|388431228|gb|EIL88312.1| 50S ribosomal protein L3 [Rhodanobacter fulvus Jip2]
Length = 213
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+G+ G L+ ++G TL++ N + + + E +
Sbjct: 4 GLVGRKCGMSRLFTEDGRSIPVTLIEATPNRVTQL-------------KTEDNDGYSAVQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAM--LPPGTPLTAAH-FRPREF 235
V A + +L T+ G + + V P + L F ++ D + G + A F +
Sbjct: 51 VSAGTKRANLLTQPLKGHYAKAKVEPGRGLWEFRVSADDLGKYSVGADIKADEVFSVGQI 110
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G++ +GFQG +KRW FK ATHG + SHR G I RV+PG
Sbjct: 111 VDVAGVSKGKGFQGTIKRWNFKMGDATHGNSLSHRAPGSIGQRQTPGRVFPG 162
>gi|310821093|ref|YP_003953451.1| 50S ribosomal protein L3 [Stigmatella aurantiaca DW4/3-1]
gi|309394165|gb|ADO71624.1| 50S ribosomal protein L3 [Stigmatella aurantiaca DW4/3-1]
Length = 223
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 70/171 (40%), Gaps = 16/171 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLIGK IG ++ G T+V V ++ PE K + +
Sbjct: 3 GLIGKKIGMTQVFNDEGNLVPVTVVDVSTCQVVGKRTPE-------------KDQYSAVT 49
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD--AMLPPGTPLTAAHFRPREFL 236
+G + + G FK + ++ L F +TP+ A G + A F + +
Sbjct: 50 LGFGEIREKVLNQAQRGFFKKNSAALRRHLKEFRVTPEDAAQFNVGDAVKADLFTKGQLV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKG-MPATHGVTKSHRRGGCIASGAGKARVYP 286
DV G T RGF GVM+RW FKG THG + R G I R YP
Sbjct: 110 DVTGTTKGRGFSGVMRRWSFKGSQTKTHGTHEYQRHPGAIGQRKTPGRTYP 160
>gi|260362276|ref|ZP_05775243.1| 50S ribosomal protein L3 [Vibrio parahaemolyticus K5030]
gi|308111331|gb|EFO48871.1| 50S ribosomal protein L3 [Vibrio parahaemolyticus K5030]
Length = 200
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 17/171 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
GLIG+ +G ++ + G T+V+V N + +K + + +
Sbjct: 3 GLIGRKVGMTRVFTEEGVSIPVTVVEVEANRVSQVKTLETDGY---------------AA 47
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ V A S + K G F +GV + L F + G LT F + +
Sbjct: 48 IQVTAGSKKANRVNKAEAGHFAKAGVEAGRGLWEFRLENGEEFEVGAELTVELFNETKKV 107
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G + +GFQG +KRW F+ THG + SHR G I RV+ G
Sbjct: 108 DVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKG 158
>gi|407804454|ref|ZP_11151276.1| 50S ribosomal protein L3 [Alcanivorax sp. W11-5]
gi|407021552|gb|EKE33318.1| 50S ribosomal protein L3 [Alcanivorax sp. W11-5]
Length = 211
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 18/171 (10%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
G++G+ G ++ ++G T+++V N + + I EE G
Sbjct: 4 GVVGRKCGMTRVFTEDGASIPVTVIEVSPNRVTQ-IRTEETD--------------GYQA 48
Query: 179 VGAESGD--PSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
V +GD S + G F +GV + + F P L G +T F + +
Sbjct: 49 VQVTTGDRRASRVVRPAAGHFAKAGVEAGRGVWEFRAEP-GDLAAGGAVTVEIFEAGQIV 107
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G++ +GFQGV+KRW F+ ATHG + SHR G I RV+ G
Sbjct: 108 DVTGISKGKGFQGVIKRWNFRTQDATHGNSLSHRAPGSIGQNQTPGRVFKG 158
>gi|406674517|ref|ZP_11081716.1| 50S ribosomal protein L3 [Bergeyella zoohelcum CCUG 30536]
gi|405583072|gb|EKB57041.1| 50S ribosomal protein L3 [Bergeyella zoohelcum CCUG 30536]
Length = 207
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 79/173 (45%), Gaps = 19/173 (10%)
Query: 118 TGLIGKIIGQYPLWMKNGEK--CRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLG 175
+G+IGK IG L+ +NG+ C L ++ + + + + + + ++ +G
Sbjct: 2 SGIIGKKIGMTSLFDENGKNIPCTVILAGPCSVLQVRTVENDGYVGYQLGFDDKSEKNVG 61
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREF 235
K G FK +G PK KL F D L G +T F EF
Sbjct: 62 ---------------KALAGHFKKAGSTPKAKLHEFHHGFDD-LKVGDEVTVNLFSEGEF 105
Query: 236 LDVRGLTVDRGFQGVMKRWGFKG-MPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G + +GFQGV+KR F G M ATHG R G I +G+ +RV+ G
Sbjct: 106 VDVTGTSKGKGFQGVVKRHNFGGVMQATHGQHNRLRAPGSIGAGSDPSRVFKG 158
>gi|346319249|gb|EGX88851.1| 60S ribosomal protein L3 [Cordyceps militaris CM01]
Length = 335
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFII-TPDAMLPPGTPLTAAHFRPRE 234
+ VG S +P T + G ++ G+ PK L F + D +LP G L FR +
Sbjct: 124 AVQVGHGSKNPRGLTSQLLGYYEAKGIAPKADLHEFHVRDADGLLPVGVQLQPDWFRVGQ 183
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIA-SGAGKARVYPG 287
++D R + GF G MKR GF G A+HG + +HR G S G +RV PG
Sbjct: 184 YVDARARSRGMGFAGGMKRHGFAGQEASHGNSLNHRTIGTTGPSQGGGSRVLPG 237
>gi|46109318|ref|XP_381717.1| hypothetical protein FG01541.1 [Gibberella zeae PH-1]
Length = 332
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFII-TPDAMLPPGTPLTAAHFRPRE 234
+ +G S D T G ++ G+ PK +L F + D +LP G + F+ +
Sbjct: 121 AVQIGQGSRDGRNVTSPLLGYYEAKGIAPKAELAEFKVRDKDGLLPVGVQILPDWFKKGQ 180
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK-ARVYPG 287
++DV+G + GF G MKR GF G A+HG +K+HR G G +RV PG
Sbjct: 181 YVDVKGRSRGMGFAGGMKRHGFSGQEASHGNSKNHRTIGTTGPSQGSGSRVMPG 234
>gi|156973051|ref|YP_001443958.1| 50S ribosomal protein L3 [Vibrio harveyi ATCC BAA-1116]
gi|269959691|ref|ZP_06174071.1| 50S ribosomal protein L3 [Vibrio harveyi 1DA3]
gi|350530058|ref|ZP_08908999.1| 50S ribosomal protein L3 [Vibrio rotiferianus DAT722]
gi|388600282|ref|ZP_10158678.1| 50S ribosomal protein L3 [Vibrio campbellii DS40M4]
gi|424034260|ref|ZP_17773667.1| 50S ribosomal protein L3 [Vibrio cholerae HENC-01]
gi|424042958|ref|ZP_17780617.1| 50S ribosomal protein L3 [Vibrio cholerae HENC-02]
gi|424048097|ref|ZP_17785653.1| 50S ribosomal protein L3 [Vibrio cholerae HENC-03]
gi|444424479|ref|ZP_21219935.1| 50S ribosomal protein L3 [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|166234607|sp|A7MWI3.1|RL3_VIBHB RecName: Full=50S ribosomal protein L3
gi|156524645|gb|ABU69731.1| hypothetical protein VIBHAR_00730 [Vibrio harveyi ATCC BAA-1116]
gi|269835614|gb|EEZ89693.1| 50S ribosomal protein L3 [Vibrio harveyi 1DA3]
gi|408873411|gb|EKM12609.1| 50S ribosomal protein L3 [Vibrio cholerae HENC-01]
gi|408883407|gb|EKM22194.1| 50S ribosomal protein L3 [Vibrio cholerae HENC-03]
gi|408883421|gb|EKM22205.1| 50S ribosomal protein L3 [Vibrio cholerae HENC-02]
gi|444242185|gb|ELU53700.1| 50S ribosomal protein L3 [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 209
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 17/171 (9%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
GLIG+ +G ++ ++G T+V+V N + +K + + +
Sbjct: 3 GLIGRKVGMTRVFTEDGVSIPVTVVEVEANRVSQVKTLETDGY---------------AA 47
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ V A S + K G F +GV + L F + G LT F + +
Sbjct: 48 IQVTAGSKKANRVNKAEAGHFAKAGVEAGRGLWEFRLENGEEFAVGAELTVELFNETKKV 107
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G + +GFQG +KRW F+ THG + SHR G I RV+ G
Sbjct: 108 DVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKG 158
>gi|302523993|ref|ZP_07276335.1| 50S ribosomal protein L3 [Streptomyces sp. AA4]
gi|302432888|gb|EFL04704.1| 50S ribosomal protein L3 [Streptomyces sp. AA4]
Length = 216
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 49/103 (47%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP K G F +GV P++ L T G +TA F +DV G +
Sbjct: 61 DPRKVNKPRTGHFDKAGVTPRRHLAELRTTDAETYEVGQEITAEVFEAGTTVDVTGTSKG 120
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+G+ GVMKR GFKG A+HG HR+ G I A RV+ G
Sbjct: 121 KGYAGVMKRHGFKGQGASHGAQAVHRKPGSIGGCATPGRVFKG 163
>gi|88607449|ref|YP_504892.1| 50S ribosomal protein L3 [Anaplasma phagocytophilum HZ]
gi|88598512|gb|ABD43982.1| ribosomal protein L3 [Anaplasma phagocytophilum HZ]
Length = 220
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%)
Query: 201 GVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMP 260
G+ KL + L PG+ + +HF +F+DV G T+ RGF GVMKR F+G+
Sbjct: 68 GIEEDYKLFESRVKAVGDLQPGSKVEVSHFFKGQFVDVTGYTIGRGFAGVMKRHNFRGLR 127
Query: 261 ATHGVTKSHRRGGCIASGAGKARVYPG 287
A+HGV+ SHR G RV+ G
Sbjct: 128 ASHGVSISHRSQGSTGQCQDPGRVFKG 154
>gi|304384275|ref|ZP_07366686.1| 50S ribosomal protein L3 [Prevotella marshii DSM 16973]
gi|304334591|gb|EFM00873.1| 50S ribosomal protein L3 [Prevotella marshii DSM 16973]
Length = 204
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 24/174 (13%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQ----VVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
GLIG+ IG ++ +G+ T+++ VV +K + + +K
Sbjct: 3 GLIGRKIGMTSVFSADGKNVPCTVIEAGPCVVTQ--VKTLEKDGYK-------------- 46
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
+ +G S TK G+FK +G PKK L F + L G +T F E
Sbjct: 47 -AVQLGFAEAKESRTTKPMLGIFKKAGTTPKKHLVEFKFEEEYNL--GDTITVELFNDTE 103
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGM-PATHGVTKSHRRGGCIASGAGKARVYPG 287
F+DV G + +GFQGV+KR GF G+ +THG R+ G I + + A+V+ G
Sbjct: 104 FVDVVGTSKGKGFQGVVKRHGFGGVGQSTHGQDDRARKPGSIGACSYPAKVFKG 157
>gi|383787040|ref|YP_005471609.1| 50S ribosomal protein L3 [Fervidobacterium pennivorans DSM 9078]
gi|383109887|gb|AFG35490.1| 50S ribosomal protein L3, bacterial [Fervidobacterium pennivorans
DSM 9078]
Length = 210
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 176 CLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREF 235
+ +G E TK G+FK + V P + L F + G +T A F+ +
Sbjct: 47 AVQLGFEEVSEKKLTKPLLGVFKKANVKPMRVLKEFRVDNVDEYSVGQEITVAIFQEGDK 106
Query: 236 LDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+D+ G T RGF G MKRW F+G P +HG K HR G + AR++ G
Sbjct: 107 IDITGWTKGRGFAGAMKRWNFQGGPKSHG-AKFHRELGSVGQHTEPARIFKG 157
>gi|336450138|ref|ZP_08620594.1| 50S ribosomal protein L3, bacterial [Idiomarina sp. A28L]
gi|336282956|gb|EGN76166.1| 50S ribosomal protein L3, bacterial [Idiomarina sp. A28L]
Length = 212
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 19/173 (10%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
GL+G+ +G ++ ++G T+++V+ N + +K + + ++
Sbjct: 4 GLVGRKVGMTRIFQEDGASVPVTVIEVLANRVTQVKTLDTDGYQ---------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD--AMLPPGTPLTAAHFRPRE 234
L V S + TK G F +GV + + F + + A G+ LT F +
Sbjct: 49 LQVTTGSKKTNRVTKPMAGHFAKAGVEAGRGVWEFRLNENEGAEFGVGSELTVDIFADTK 108
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G + +GF G +KRW F ATHG + SHR G I +V+ G
Sbjct: 109 LVDVTGTSKGKGFAGTVKRWNFSMQDATHGNSLSHRAPGSIGQNQSPGKVFKG 161
>gi|418421924|ref|ZP_12995097.1| 50S ribosomal protein L3 [Mycobacterium abscessus subsp. bolletii
BD]
gi|363995840|gb|EHM17057.1| 50S ribosomal protein L3 [Mycobacterium abscessus subsp. bolletii
BD]
Length = 205
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 186 PSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPP---GTPLTAAHFRPREFLDVRGLT 242
P TK G F +G+ P++ L + +A G LTA F ++DV G +
Sbjct: 47 PRKVTKPVTGQFAAAGINPRRHLAELRLDDEAAAAEYEVGQELTAEIFSDGAYVDVTGTS 106
Query: 243 VDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GF G MKR GF+G A+HG HRR G I A RV+ G
Sbjct: 107 KGKGFAGTMKRHGFRGQGASHGAQAVHRRPGSIGGCATPGRVFKG 151
>gi|227549826|ref|ZP_03979875.1| 50S ribosomal protein L3 [Corynebacterium lipophiloflavum DSM
44291]
gi|227078081|gb|EEI16044.1| 50S ribosomal protein L3 [Corynebacterium lipophiloflavum DSM
44291]
Length = 218
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 50/103 (48%)
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
DP K G FK +GV P++ + + + G A F ++DV G T
Sbjct: 61 DPRKTKKPQAGHFKKAGVNPRRHVAEIRMDDTSAYEVGQEFNATIFDGDTYVDVVGTTKG 120
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+G+ G MKR GF G A+HG +HRR G I + A RV+ G
Sbjct: 121 KGYAGAMKRHGFAGQGASHGNQAAHRRVGSIGACATPGRVFKG 163
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.140 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,162,622,842
Number of Sequences: 23463169
Number of extensions: 231031549
Number of successful extensions: 521254
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2784
Number of HSP's successfully gapped in prelim test: 680
Number of HSP's that attempted gapping in prelim test: 516810
Number of HSP's gapped (non-prelim): 3542
length of query: 296
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 155
effective length of database: 9,050,888,538
effective search space: 1402887723390
effective search space used: 1402887723390
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)