BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy451
(296 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18665|RM03_RAT 39S ribosomal protein L3, mitochondrial OS=Rattus norvegicus
GN=Mrpl3 PE=3 SV=1
Length = 347
Score = 165 bits (418), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 133/230 (57%), Gaps = 21/230 (9%)
Query: 60 KERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKR 117
K + E+L+ N +F++++V D+ K+ + + PLK EP L P E S R
Sbjct: 44 KSSTWWDEHLSEENVSFVKQLVSDEN-----KAQLTSLLNPLKDEPWPLHPWE--PGSSR 96
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
GLI +G PLW K+G+K TL+QV D H++KY P E+ K L
Sbjct: 97 VGLIALKLGMMPLWTKDGQKHAVTLLQVQDCHVLKYTPKEDHN-----------GKTATL 145
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
VG ++G +++ G+PPK+ F +T +A++ GTPL AAHFRP +++D
Sbjct: 146 TVGGKTGSRLYKANSILEFYRDLGLPPKQTTKIFHVTDNAVIKQGTPLYAAHFRPGQYVD 205
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V T+ +GFQGVMKRWGFKG PA+HG TK+HRR G I++G ARV+PG
Sbjct: 206 VTAKTIGKGFQGVMKRWGFKGQPASHGQTKTHRRPGAISTG-DIARVWPG 254
>sp|Q3ZBX6|RM03_BOVIN 39S ribosomal protein L3, mitochondrial OS=Bos taurus GN=MRPL3 PE=1
SV=1
Length = 348
Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 129/223 (57%), Gaps = 17/223 (7%)
Query: 65 YIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKI 124
+ E+L+ N +F++++V D+ A + P I P +P S R GL+
Sbjct: 49 WDEHLSEENVSFVKQLVSDENKAQLASKLCPLKDEPWPIHPWEP-----GSSRVGLVALK 103
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K+G+K TL+QV D H++KY P E K+ L VG ++
Sbjct: 104 LGMMPLWTKDGKKHVVTLLQVQDCHVLKYTPKENHN-----------GKMAALTVGGKTV 152
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
+ ++ G+PPK+K+ F +T +A++ PGTPL AAHFRP +++DV T+
Sbjct: 153 SRFHKSTSILEFYQELGLPPKQKIKMFNVTDNAVIKPGTPLYAAHFRPGQYVDVTAKTIG 212
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWGFKG PATHG TK+HRR G I++G ARV+PG
Sbjct: 213 KGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTG-DVARVWPG 254
>sp|Q99N95|RM03_MOUSE 39S ribosomal protein L3, mitochondrial OS=Mus musculus GN=Mrpl3
PE=2 SV=1
Length = 348
Score = 161 bits (407), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 134/230 (58%), Gaps = 21/230 (9%)
Query: 60 KERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKR 117
K + E+L+ N +F++++V D+ K+ + + PLK EP L P E S R
Sbjct: 44 KSSTWWDEHLSEENLSFVKQLVSDEN-----KTQLTSKLNPLKDEPWPLHPWE--PGSFR 96
Query: 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCL 177
GLI +G PLW K+G+K TL+QV D H++KY P E+ K+ L
Sbjct: 97 VGLIALKLGMMPLWTKDGQKHAVTLLQVQDCHVLKYTPKEDHN-----------GKIAAL 145
Query: 178 LVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLD 237
VG ++ +++ G+PPK+ F +T +A++ PGTPL AAHFRP +++D
Sbjct: 146 TVGGKTVSRFYKPDSRLEFYRDLGLPPKQIHKIFHVTDNAVIKPGTPLYAAHFRPGQYVD 205
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V T+ +GFQGVMKRWGFKG PA+HG TK+HRR G I++G ARV+PG
Sbjct: 206 VTAKTIGKGFQGVMKRWGFKGQPASHGQTKTHRRPGAISTG-DIARVWPG 254
>sp|P09001|RM03_HUMAN 39S ribosomal protein L3, mitochondrial OS=Homo sapiens GN=MRPL3
PE=1 SV=1
Length = 348
Score = 154 bits (390), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 124/228 (54%), Gaps = 17/228 (7%)
Query: 60 KERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTG 119
K + E+L+ N FI+++V D+ A + P I P +P S R G
Sbjct: 44 KSGTWWDEHLSEENVPFIKQLVSDEDKAQLASKLCPLKDEPWPIHPWEP-----GSFRVG 98
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLV 179
LI +G PLW K+G+K TL+QV D H++KY E K+ L V
Sbjct: 99 LIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCN-----------GKMATLSV 147
Query: 180 GAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
G ++ ++ G+PPK+ + F IT +A + PGTPL AAHFRP +++DV
Sbjct: 148 GGKTVSRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVT 207
Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
T+ +GFQGVMKRWGFKG PATHG TK+HRR G +A+G RV+PG
Sbjct: 208 AKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATGD-IGRVWPG 254
>sp|P49404|RM03_CAEEL Putative 39S ribosomal protein L3, mitochondrial OS=Caenorhabditis
elegans GN=C26E6.6 PE=3 SV=3
Length = 403
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 119/222 (53%), Gaps = 10/222 (4%)
Query: 69 LTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQY 128
+++ K +E V+ + A + + + T + + ++I SS+R GL+ + IG
Sbjct: 59 ISQGTKNLLETVIEKETLAASTIAFQNSQETNVSV-----VDIPDSSRRVGLVVRKIGML 113
Query: 129 PLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL---VGAESGD 185
P W G + T+++V +NH++ PE + + + + + G + VGA + D
Sbjct: 114 PQWTNEGNRILCTVLEVDENHVVSITSPEAWYKSSAVGKRKAFNRHGPMWRVTVGAGNDD 173
Query: 186 PSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDR 245
P+ YT Y F +G+P K+KL F++T DA+ G PL A HF +++ G T+D
Sbjct: 174 PTKYTLGYRRQFVRAGIPVKEKLGCFLVTEDALPSAGQPLDARHFGVGQYVTATGKTIDW 233
Query: 246 GFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GFQG M RWG +G P T TKSHRR G + S G AR++PG
Sbjct: 234 GFQGGMHRWGMRGQP-TRRTTKSHRRIGSVGS-VGDARIWPG 273
>sp|Q9LRN8|RK3B_ARATH 50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana
GN=RPL3B PE=2 SV=1
Length = 324
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 95/178 (53%), Gaps = 13/178 (7%)
Query: 110 EITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGE 169
E+++ SKRTG+I G LW K G++ +++ V DN I+ + E
Sbjct: 69 EMSSRSKRTGIIAVKCGMTALWDKWGKRIPISILWVDDN-IVSQVKTVE----------- 116
Query: 170 PKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAH 229
K + L +G P +K G F+ GVP K+KL F +T DA+LP GT L H
Sbjct: 117 -KEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGVRH 175
Query: 230 FRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F P +++DV G+T +GFQG MKR GF GMPA+HG + SHR GG +V+ G
Sbjct: 176 FVPGQYVDVTGITRGKGFQGCMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKG 233
>sp|B6IRQ6|RL3_RHOCS 50S ribosomal protein L3 OS=Rhodospirillum centenum (strain ATCC
51521 / SW) GN=rplC PE=3 SV=1
Length = 235
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+GLI + +G ++ GE T++++ ++ R E +
Sbjct: 2 RSGLIAQKLGMTRVFTDEGEHVPVTVLKLDQVQVV-------------AQRTEDRDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +GA K F + V PKKKL F +TPDA++ G +TA HF P +F+
Sbjct: 49 LQLGAGKAKVKNVAKAQREQFARAKVEPKKKLVEFRVTPDALIEVGAEITADHFVPGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G T+ RGF G M+RW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTTIGRGFTGPMRRWNFGGLRATHGVSVSHRSHGS 146
>sp|Q2W2J1|RL3_MAGSA 50S ribosomal protein L3 OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=rplC PE=3 SV=1
Length = 229
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+GLI + +G ++ ++G T+++V ++ R K
Sbjct: 2 RSGLIAQKVGMTRIFTEDGTHVPVTVLKVDTCQVVST-------------RSVEKDGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + +K F + V PKKKL F + P+ +L GT L+AAHF P +++
Sbjct: 49 VQLGAGTAKVKNVSKPARANFAKAKVEPKKKLVEFRVAPENLLEVGTELSAAHFIPGQYV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GF G MKRW F+G+ ATHGV+ SHR G +V+ G
Sbjct: 109 DVTGTTIGKGFAGGMKRWNFRGLEATHGVSVSHRSHGSTGQRQDPGKVFKG 159
>sp|A0L5X3|RL3_MAGSM 50S ribosomal protein L3 OS=Magnetococcus sp. (strain MC-1) GN=rplC
PE=3 SV=1
Length = 214
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 13/169 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+GLIG+ +G ++ ++G++ TLVQ+ ++ E+ N
Sbjct: 2 RSGLIGRKLGMSQMFTEDGQRIPVTLVQLGPCAVVAKRSDEQDGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G E PS +K G + + V P++ L F ++ G LTA F F+
Sbjct: 49 VQLGFEEAKPSRLSKTVRGQYAKANVTPRRVLREFRVSNPESYEVGQELTAEQFAVDSFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
DV G TV +GF GVMKRWGF+G A+HG K HR GG I RVY
Sbjct: 109 DVTGKTVGKGFAGVMKRWGFRGGRASHGAHKVHRSGGSIGQCQTPGRVY 157
>sp|B1ZLK4|RL3_METPB 50S ribosomal protein L3 OS=Methylobacterium populi (strain ATCC
BAA-705 / NCIMB 13946 / BJ001) GN=rplC PE=3 SV=1
Length = 246
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++Q+ ++ +R K
Sbjct: 2 RSGVIARKVGMTRVFTDAGEHVPVTVLQIDQCQVV-------------AHRTTEKDGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L VG ++ G F + V PKKKL F ++ DA++P G +TA HF P +F+
Sbjct: 49 LQVGVGKAKVKNVSQAERGRFAVAKVEPKKKLAEFRVSEDALIPVGAEITADHFIPGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G T +GF G MKRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTTTGKGFAGGMKRWNFGGLRATHGVSISHRSIGS 146
>sp|P48952|RL3_RICPR 50S ribosomal protein L3 OS=Rickettsia prowazekii (strain Madrid E)
GN=rplC PE=3 SV=2
Length = 216
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + +G ++ GE+ TLV+V D ++ ++ K
Sbjct: 2 RTGIIAQKVGMTSVFNDKGERISLTLVKVDDCQVV-------------GHKTLAKHGYNA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ D + + L HFR +F+
Sbjct: 49 LVIGVKDQKISKVTKPMKQVFANAKIAPKTKLKEFRISEDNFIDIASILEVDHFRVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>sp|Q1RHM1|RL3_RICBR 50S ribosomal protein L3 OS=Rickettsia bellii (strain RML369-C)
GN=rplC PE=3 SV=1
Length = 215
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + +G ++ NG++ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKVGMTSVFNNNGKRVPLTLVKVDDCQVVGHKIAEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ V PK KL F I+ D + L HF +F+
Sbjct: 49 LVIGIKDKKISRVTKPMKQVFANAKVSPKTKLKEFRISEDNFIDIAASLEVDHFTAGQFI 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
DV T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DVTATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>sp|A8GVB4|RL3_RICB8 50S ribosomal protein L3 OS=Rickettsia bellii (strain OSU 85-389)
GN=rplC PE=3 SV=1
Length = 215
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + +G ++ NG++ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKVGMTSVFNNNGKRVPLTLVKVDDCQVVGHKIAEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ V PK KL F I+ D + L HF +F+
Sbjct: 49 LVIGIKDKKISRVTKPMKQVFANAKVSPKTKLKEFRISEDNFIDIAASLEVDHFTAGQFI 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
DV T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DVTATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>sp|B0UHW9|RL3_METS4 50S ribosomal protein L3 OS=Methylobacterium sp. (strain 4-46)
GN=rplC PE=3 SV=1
Length = 246
Score = 94.4 bits (233), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T+++V ++ +R K
Sbjct: 2 RSGVIAQKVGMTRVFTDAGEHVPVTVLKVDQCQVV-------------AHRTVEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L VG +K G F + V PK+KL F +T DA++P G +TA HF P +F+
Sbjct: 49 LQVGVGKAKVKNVSKAERGRFAIAKVEPKRKLAEFRVTEDALIPVGAEITADHFIPGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G T +GF G MKRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTTTGKGFAGGMKRWNFGGLRATHGVSISHRSIGS 146
>sp|A8EZL6|RL3_RICCK 50S ribosomal protein L3 OS=Rickettsia canadensis (strain McKiel)
GN=rplC PE=3 SV=1
Length = 215
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERIALTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + + L HF +F+
Sbjct: 49 LVIGVKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEENFIDVAASLEVDHFMAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ +T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITAITIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>sp|A9W4Q1|RL3_METEP 50S ribosomal protein L3 OS=Methylobacterium extorquens (strain
PA1) GN=rplC PE=3 SV=1
Length = 246
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++Q+ ++ +R K
Sbjct: 2 RSGVIARKVGMTRVFTDAGEHVPVTVLQIDQCQVV-------------AHRTTEKDGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L VG ++ G F + V PKKKL F ++ DA++P G +TA HF P +F+
Sbjct: 49 LQVGVGKAKVKNVSQAERGRFAVAKVEPKKKLAEFRVSEDALIPVGAEITADHFIPGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G + +GF G MKRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTSTGKGFAGGMKRWNFGGLRATHGVSISHRSIGS 146
>sp|A8F2E7|RL3_RICM5 50S ribosomal protein L3 OS=Rickettsia massiliae (strain Mtu5)
GN=rplC PE=3 SV=1
Length = 215
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + +G ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKVGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + + T L HF +F+
Sbjct: 49 LVIGVKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEEHFIDIATSLEVDHFTAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFRGKKMAGHMGC 168
>sp|B7L0R1|RL3_METC4 50S ribosomal protein L3 OS=Methylobacterium chloromethanicum
(strain CM4 / NCIMB 13688) GN=rplC PE=3 SV=1
Length = 246
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++Q+ ++ +R K
Sbjct: 2 RSGVIARKVGMTRVFTDAGEHVPVTVLQIDQCQVV-------------AHRTTEKDGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L VG ++ G F + V PKKKL F ++ DA++P G +TA HF P +F+
Sbjct: 49 LQVGVGKAKVKNVSQAERGRFAVAKVEPKKKLAEFRVSEDALIPVGAEITADHFIPGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G + +GF G MKRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTSTGKGFAGGMKRWNFGGLRATHGVSISHRSIGS 146
>sp|C3PPA7|RL3_RICAE 50S ribosomal protein L3 OS=Rickettsia africae (strain ESF-5)
GN=rplC PE=3 SV=1
Length = 215
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L+VG + S TK +F N+ + PK KL F I+ + + L HF +F+
Sbjct: 49 LVVGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>sp|Q2G8Y0|RL3_NOVAD 50S ribosomal protein L3 OS=Novosphingobium aromaticivorans (strain
DSM 12444) GN=rplC PE=3 SV=1
Length = 251
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 13/169 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++ + + ++ E R Y
Sbjct: 2 RTGVIAKKVGMTRLFQEDGRHVPVTVLSLENCQVVSVRTAE-----RDGYV--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +GA K F + VP K ++ F + DA+L G+ + A+HF P +++
Sbjct: 49 LQLGAGEAKQKNVAKPQREHFAKAEVPLKMEVAEFRVADDALLDVGSTIAASHFVPGQYV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
D+ G T +GFQG MKRWGF GM ATHGV+ SHR G + RV+
Sbjct: 109 DITGQTQGKGFQGAMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVF 157
>sp|Q5NQ64|RL3_ZYMMO 50S ribosomal protein L3 OS=Zymomonas mobilis subsp. mobilis
(strain ATCC 31821 / ZM4 / CP4) GN=rplC PE=3 SV=1
Length = 242
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 84/169 (49%), Gaps = 13/169 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++++ D ++ + + +
Sbjct: 2 RTGVIAKKVGMTRLFQEDGRHVPVTVLKLEDVQVV-------------AVKNKDQDGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA S TK G F + V K KL F ++ DA+L GT ++A HF + +
Sbjct: 49 VQLGAGSAKAKNVTKPVRGHFAKAEVELKAKLVEFPVSEDAVLEVGTSISADHFIAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
D+ G T +GF G MKRWGF G+ ATHGV+ SHR G + RV+
Sbjct: 109 DISGQTQGKGFAGAMKRWGFGGLRATHGVSLSHRSHGSTGNRQDPGRVF 157
>sp|A8GT69|RL3_RICRS 50S ribosomal protein L3 OS=Rickettsia rickettsii (strain Sheila
Smith) GN=rplC PE=3 SV=1
Length = 215
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + + L HF +F+
Sbjct: 49 LVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>sp|B0BUR0|RL3_RICRO 50S ribosomal protein L3 OS=Rickettsia rickettsii (strain Iowa)
GN=rplC PE=3 SV=1
Length = 215
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + + L HF +F+
Sbjct: 49 LVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>sp|C4K2H9|RL3_RICPU 50S ribosomal protein L3 OS=Rickettsia peacockii (strain Rustic)
GN=rplC PE=3 SV=1
Length = 215
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + + L HF +F+
Sbjct: 49 LVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>sp|Q92GW6|RL3_RICCN 50S ribosomal protein L3 OS=Rickettsia conorii (strain ATCC VR-613
/ Malish 7) GN=rplC PE=3 SV=1
Length = 215
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + + L HF +F+
Sbjct: 49 LVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>sp|B4R8L7|RL3_PHEZH 50S ribosomal protein L3 OS=Phenylobacterium zucineum (strain HLK1)
GN=rplC PE=3 SV=1
Length = 261
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G + + G T++ + ++ +R + K
Sbjct: 2 RTGVIAKKLGMARFFDEAGVHVPVTVLSLEGCQVV-------------AHRTKDKDGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +GA S P +K G F V PK KL F ++ D ++ G LTA HF P + +
Sbjct: 49 LQLGAGSKKPKNTSKGLRGHFAKGQVEPKAKLVEFKVSEDNLIDVGAELTADHFVPGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D+ G TV +GF G MKRW F G+ ATHGV+ SHR G R +PG
Sbjct: 109 DITGTTVGKGFAGAMKRWNFGGLRATHGVSVSHRSHGSTGQRQDPGRTFPG 159
>sp|B8IS85|RL3_METNO 50S ribosomal protein L3 OS=Methylobacterium nodulans (strain
ORS2060 / LMG 21967) GN=rplC PE=3 SV=1
Length = 251
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T+++V ++ +R K
Sbjct: 2 RSGVIAQKVGMTRVFTDAGEHVPVTVLKVDQCQVV-------------AHRTVEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L VG +K G F + V PK+KL F ++ DA++P G +TA HF P +F+
Sbjct: 49 LQVGVGKAKVKNVSKAERGRFAIAKVEPKRKLAEFRVSEDALIPVGAEITADHFIPGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G+T +GF G MKRW F G+ A+HGV+ SHR G
Sbjct: 109 DVTGITTGKGFAGGMKRWNFGGLRASHGVSISHRSIGS 146
>sp|B1LWS6|RL3_METRJ 50S ribosomal protein L3 OS=Methylobacterium radiotolerans (strain
ATCC 27329 / DSM 1819 / JCM 2831) GN=rplC PE=3 SV=1
Length = 241
Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 78/158 (49%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ ++ +R K
Sbjct: 2 RSGVIAQKVGMTRVFTDAGEHVPVTVLKIDQCQVV-------------AHRTVEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L VG + G F + V PKKKL F +T DA++P G +TA HF P +F+
Sbjct: 49 LQVGVGKAKVKNVSAAERGRFAVAKVEPKKKLAEFRVTEDALIPVGAEITADHFIPGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G T +GF G +KRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTTTGKGFAGGIKRWNFGGLRATHGVSISHRSIGS 146
>sp|Q0ANQ0|RL3_MARMM 50S ribosomal protein L3 OS=Maricaulis maris (strain MCS10) GN=rplC
PE=3 SV=1
Length = 268
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 13/173 (7%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
+RTG++ + +G ++ ++G T++ + + ++ + +R Y
Sbjct: 5 DRRTGVVARKLGMTRIFAEDGSHVPCTVLHMDNVQVVSHKTA-----DRDGYV------- 52
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
L +GA K G F + V PK+KL F + DA++ G+ LTA HF P +
Sbjct: 53 -ALQLGAGEAKAKRTPKAMRGHFAKAKVAPKRKLVEFRVAEDALIEVGSELTADHFVPGQ 111
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G+++ +GF G MKR GF G+ ATHGV+ SHR G +V+ G
Sbjct: 112 KVDVAGISIGKGFAGAMKRHGFGGLRATHGVSISHRSHGSTGQCQDPGKVFKG 164
>sp|Q1GP99|RL3_SPHAL 50S ribosomal protein L3 OS=Sphingopyxis alaskensis (strain DSM
13593 / LMG 18877 / RB2256) GN=rplC PE=3 SV=1
Length = 257
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ +G T++ + ++ E R Y
Sbjct: 2 RTGVIAKKMGMTRLFQDDGRHVPVTVLSLEGCQVVSVRDKE-----RDGYV--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + K G + + V PK KL F + DA L G L+A HF + +
Sbjct: 49 VQLGAGTAKAKNVAKPQRGAYGKAEVEPKAKLVEFRVADDATLDVGAELSADHFVAGQMV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
D++G+T +GF G MKRWGF GM ATHGV+ SHR G + RV+
Sbjct: 109 DIQGVTQGKGFAGAMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVF 157
>sp|Q1GK37|RL3_RUEST 50S ribosomal protein L3 OS=Ruegeria sp. (strain TM1040) GN=rplC
PE=3 SV=1
Length = 239
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++ + ++ R E K
Sbjct: 2 RSGIIAKKVGMTRLFMEDGKQIPVTVLSLDGLQVV-------------AQRTEDKDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA S +K G F S V PK+KL F + D ++ G ++A HF + +
Sbjct: 49 VQLGAGSAKVKRVSKAMRGHFAASKVEPKRKLVEFRVPADGLIEVGAEISAEHFLEGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKRW F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DVTGTSIGKGFAGAMKRWNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 159
>sp|Q4UMS9|RL3_RICFE 50S ribosomal protein L3 OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=rplC PE=3 SV=1
Length = 215
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + + L +F +F+
Sbjct: 49 LVIGIKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEENFIDIAASLEVDYFTAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>sp|Q68W78|RL3_RICTY 50S ribosomal protein L3 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rplC PE=3 SV=1
Length = 215
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V ++ ++ K
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDGCQVV-------------GHKTLAKHGYNA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ D + + L HF +F+
Sbjct: 49 LVIGVKDQKISRVTKPMKQVFANAKISPKTKLKEFRISEDNFIDIASILEVDHFSVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>sp|A8GPF0|RL3_RICAH 50S ribosomal protein L3 OS=Rickettsia akari (strain Hartford)
GN=rplC PE=3 SV=1
Length = 215
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 13/180 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I + IG ++ GE+ TLV+V D ++ + E+ N
Sbjct: 2 RTGIIAQKIGMTSVFNDKGERIPLTLVKVDDCQVVGHKTLEKHGYN-------------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L++G + S TK +F N+ + PK KL F I+ + L HF +F+
Sbjct: 49 LVIGIKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEGNFIDIAANLEVDHFMAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296
D+ T+ +GF G MKR F+G+ A+HGV+ SHR G +V+ G + + C
Sbjct: 109 DITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGC 168
>sp|Q0BUQ0|RL3_GRABC 50S ribosomal protein L3 OS=Granulibacter bethesdensis (strain ATCC
BAA-1260 / CGDNIH1) GN=rplC PE=3 SV=1
Length = 231
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 78/166 (46%), Gaps = 23/166 (13%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTL-----VQVVDNHIIKYIPPEEFKPNRKPYRGEPK 171
RTGLI + +G L+ ++G T+ VQVVD R + +
Sbjct: 2 RTGLIARKLGMTRLFKEDGTHVPVTVLHLDQVQVVDT------------------RTKER 43
Query: 172 RKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFR 231
+ +G P +K G F V PKKKL F + DA+L PG L+A HF
Sbjct: 44 DGYTAVQLGFGQAKPKHVSKANKGHFARVKVEPKKKLVEFRVAEDAILEPGATLSAEHFL 103
Query: 232 PREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277
+ +DV G + +GF G MKRW F G+ A+HGV+ SHR G +
Sbjct: 104 VGQKVDVTGTSKGKGFAGAMKRWNFAGLEASHGVSISHRSHGSTGN 149
>sp|A8LM48|RL3_DINSH 50S ribosomal protein L3 OS=Dinoroseobacter shibae (strain DFL 12)
GN=rplC PE=3 SV=1
Length = 279
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++Q+ ++ R K
Sbjct: 2 RSGVIAKKVGMTRLFMEDGKQVPVTVLQLDKLQVV-------------AQRTAEKDGYSA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + TK G F + V PK+K+ F + P+ ++ G +TA H+ +++
Sbjct: 49 VQLGAGTAKAKRTTKAMRGHFAAASVEPKRKVAEFRVAPENLINVGEEITADHYFEGQYV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DVSGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 159
>sp|Q3J5S2|RL3_RHOS4 50S ribosomal protein L3 OS=Rhodobacter sphaeroides (strain ATCC
17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rplC PE=3 SV=1
Length = 240
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L++++G++ T++Q+ ++ R K
Sbjct: 2 RSGVIAKKLGMTRLFLEDGKQVPVTVLQLDSLQVV-------------AQRTTEKDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + + G F + V PK+K+ F +TPD ++ G +TA H+ +F+
Sbjct: 49 VQLGAGAAKAKRVSAAQRGHFAKANVEPKRKIAEFRVTPDCLIDVGAEITADHYFAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D+ G ++ +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DIAGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 159
>sp|Q2RQW0|RL3_RHORT 50S ribosomal protein L3 OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=rplC PE=3 SV=1
Length = 235
Score = 88.2 bits (217), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+GLI + +G L+ G T+++V ++ R
Sbjct: 2 RSGLIAQKVGMTRLFTDEGTHVPVTVLKVEACQVV-------------AVRTSETDGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA +K G F + V PKKK+ F ++ D +L PG L+AAHF + +
Sbjct: 49 VQLGAGVAKVKRTSKAMRGHFAAAKVEPKKKVVEFRVSEDCLLEPGAELSAAHFVAGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
D+ G T+ +GF G MKR F+G+ ATHGV+ SHR G RV+ G
Sbjct: 109 DIAGTTIGKGFAGAMKRHNFRGLEATHGVSVSHRSHGSTGQCQDPGRVFKG 159
>sp|A5V602|RL3_SPHWW 50S ribosomal protein L3 OS=Sphingomonas wittichii (strain RW1 /
DSM 6014 / JCM 10273) GN=rplC PE=3 SV=2
Length = 251
Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 18/175 (10%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTG+I K +G L+ ++G T++ + + ++ R + +
Sbjct: 2 RTGVIAKKMGMTRLFQEDGRHVPVTVLALENVQVV-------------ARREQDRDGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA S P TK G F + V PK + F ++ D +L G ++A H+ +F+
Sbjct: 49 VQLGAGSAKPKNLTKPERGHFGKAEVEPKAFVAEFRVSEDGLLDVGAEISADHYVAGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQ 291
D++G T +GF G MKRWGF G+ ATHGV+ SHR G R PG V +
Sbjct: 109 DIQGSTQGKGFAGGMKRWGFGGLRATHGVSVSHRSLGSTGQ-----RQDPGKVFK 158
>sp|Q89J84|RL3_BRAJA 50S ribosomal protein L3 OS=Bradyrhizobium japonicum (strain USDA
110) GN=rplC PE=3 SV=1
Length = 238
Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 16/165 (9%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ + R E K
Sbjct: 2 RSGVIAQKVGMTRVFTEAGEHIPVTVLKLGNCQVVGH-------------RTEEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G+ S K G F + V PK+++ F +T DAM+P G + A HF +F+
Sbjct: 49 LQLGSGSRKTVYMPKAERGQFAVAKVEPKRRVEEFRVTADAMIPVGAEIQADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGK 281
DV G +V +GF G MKRW F G+ ATHGV+ SHR I S G+
Sbjct: 109 DVTGTSVGKGFAGGMKRWNFGGLRATHGVSISHR---SIGSTGGR 150
>sp|Q5FTY3|RL3_GLUOX 50S ribosomal protein L3 OS=Gluconobacter oxydans (strain 621H)
GN=rplC PE=3 SV=1
Length = 227
Score = 87.8 bits (216), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
RTGLI K +G L+ ++G T++ + + ++ E R Y
Sbjct: 2 RTGLIAKKLGMTRLFKEDGTHVPVTVLHLDNVEVVDARTNE-----RDGYT--------A 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G + TK G F + V PK+ L F ++ DA+L GT L+AAHF + +
Sbjct: 49 IQLGLGNAKVKNVTKANRGHFARTKVEPKRHLAEFRVSEDALLEAGTKLSAAHFVVGQKV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G + +GF GVMKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 109 DVTGQSKGKGFAGVMKRHNFAGLEASHGVSISHRSHGSTGQRQDPGKVFKG 159
>sp|Q5LLU6|RL3_RUEPO 50S ribosomal protein L3 OS=Ruegeria pomeroyi (strain ATCC 700808 /
DSM 15171 / DSS-3) GN=rplC PE=3 SV=1
Length = 241
Score = 87.8 bits (216), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 17/173 (9%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++Q+ + ++ E K G
Sbjct: 2 RSGIIAKKVGMTRLFMEDGKQIPVTVLQLDNLQVVAQRTTE---------------KDGY 46
Query: 177 LLVGAESGDPSL--YTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
V +G P + +K G F V PK+KL F ++ DA++ G ++A HF +
Sbjct: 47 TAVQLGAGTPKIKRVSKAMRGHFAAQKVEPKRKLAEFRVSEDALIEVGAEISAEHFLTGQ 106
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G ++ +GF G MKR F G+ A+HGV+ SHR G RV+ G
Sbjct: 107 KVDVSGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGRVFKG 159
>sp|P31334|RM09_YEAST 54S ribosomal protein L9, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MRPL9 PE=1 SV=3
Length = 269
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 97/203 (47%), Gaps = 15/203 (7%)
Query: 87 APAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKN-GEKCRTTLVQV 145
AP++ + I T + P KR GLI + G P + K+ GE+ T+++V
Sbjct: 28 APSIANSITTEAPAINHSPELANARKWLPKRCGLITRKKGMMPYFDKSTGERSAATILEV 87
Query: 146 VDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPK 205
+ +I + E C VG S S +++ G F + V PK
Sbjct: 88 NNVEVIMH------------RTSEVNGYFACQ-VGYGSRHLSKVSRQMLGHFASKVVNPK 134
Query: 206 KKLCRFIITPD-AMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHG 264
+ + F + + ++PPGT L + F+ +++DVR ++ +GF GVMKR+GFKG+ A+HG
Sbjct: 135 EHVAEFRVKDEKGLIPPGTLLKPSFFKEGQYVDVRSVSKGKGFTGVMKRYGFKGLRASHG 194
Query: 265 VTKSHRRGGCIASGAGKARVYPG 287
+ HR GG RV PG
Sbjct: 195 TSIMHRHGGSYGQNQDPGRVLPG 217
>sp|A1A069|RL3_BIFAA 50S ribosomal protein L3 OS=Bifidobacterium adolescentis (strain
ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) GN=rplC
PE=3 SV=1
Length = 213
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 80/173 (46%), Gaps = 13/173 (7%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
S RT L+GK +G +W +NG TLV V N ++ + EE G +L
Sbjct: 2 SNRTALLGKKLGMSQVWDENGFFVPVTLVDVSTN-VVTAVKSEESD-------GYKAVQL 53
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
G V DP+ TK G F +GV P++ L PG LTA F
Sbjct: 54 GYGQV-----DPTKVTKPLAGHFAKAGVTPRRHLAEVRTDNAEEFEPGQELTAELFPEGT 108
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G T +GF G +KRWGFK THG K+ RR G + + A +R+ G
Sbjct: 109 LVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGACATPSRILKG 161
>sp|Q92QH0|RL3_RHIME 50S ribosomal protein L3 OS=Rhizobium meliloti (strain 1021)
GN=rplC PE=3 SV=1
Length = 228
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ +R E K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHIPVTVLRLENCQVV-------------SHRTEEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA K G F + V PK KL F ++ D ++ G LTA HF + +
Sbjct: 49 VQLGAGRSKVKNTPKAMRGHFAAASVEPKAKLVEFRVSADNLIDIGAELTAGHFVAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GF G +KR F G+ ATHGV+ SHR G S RV+ G
Sbjct: 109 DVTGTTIGKGFAGAIKRHNFGGLRATHGVSVSHRSHGSTGSNQDPGRVWKG 159
>sp|A7HWR1|RL3_PARL1 50S ribosomal protein L3 OS=Parvibaculum lavamentivorans (strain
DS-1 / DSM 13023 / NCIMB 13966) GN=rplC PE=3 SV=1
Length = 251
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G T++++ + ++ R + K
Sbjct: 2 RSGVIVKKVGMTRLFMEDGRHVPVTVLKLDNCQVV-------------SQRTDEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +G G F + V PK +L F ++PD +L G +TA HF +++
Sbjct: 49 VQLGTGRAKAKNVANAQRGQFARASVEPKLELVEFRVSPDNLLDVGVEITADHFIAGQYV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF GVMKR F G+ ATHGV+ SHR G +V+ G
Sbjct: 109 DVSGTSIGKGFAGVMKRHNFGGLRATHGVSVSHRSHGSTGQNQDPGKVFKG 159
>sp|A6U859|RL3_SINMW 50S ribosomal protein L3 OS=Sinorhizobium medicae (strain WSM419)
GN=rplC PE=3 SV=1
Length = 228
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ R E K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHIPVTVLRLENCQVV-------------AQRTEEKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA K G F + V PK KL F ++ D ++ G+ LTA HF + +
Sbjct: 49 VQLGAGRSKVKNTPKAMRGHFAAASVEPKAKLVEFRVSADNLIDIGSELTAGHFVAGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GF G +KR F G+ ATHGV+ SHR G S RV+ G
Sbjct: 109 DVTGTTIGKGFAGAIKRHNFGGLRATHGVSVSHRSHGSTGSNQDPGRVWKG 159
>sp|Q8UE18|RL3_AGRT5 50S ribosomal protein L3 OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=rplC PE=3 SV=1
Length = 213
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ GE T++++ + ++ R E K
Sbjct: 2 RSGVIAQKVGMTRVYNDAGEHIPVTVLRLDNVQVV-------------AQRTEDKNGYTA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA TK G F + V PK KL F ++P+ ++ G LTA HF+ + +
Sbjct: 49 VQLGAGQSKVKNTTKALRGHFAAANVEPKAKLVEFRVSPENLIDIGATLTANHFQSGQLV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G T+ +GF G MKR F G A+HG + SHR G + RV+ G
Sbjct: 109 DVTGTTIGKGFAGAMKRHNFGGGRASHGNSVSHRAHGSTGNNQDPGRVWKG 159
>sp|A5ELM7|RL3_BRASB 50S ribosomal protein L3 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC
BAA-1182) GN=rplC PE=3 SV=1
Length = 239
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 81/158 (51%), Gaps = 13/158 (8%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I + +G ++ + GE T++++ + ++ + R K
Sbjct: 2 RSGVIAQKVGMTRVFTETGEHIPVTVLKLGNCQVVGH-------------RTTEKNGYVA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L +G+ S K G F + V PK+K+ F ++ D+++P G + A HF +F+
Sbjct: 49 LQLGSGSRKTVYMPKAERGQFAVAKVEPKRKVAEFRVSEDSLIPVGAEILADHFVVGQFV 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGC 274
DV G TV +GF G MKRW F G+ ATHGV+ SHR G
Sbjct: 109 DVTGTTVGKGFAGGMKRWNFGGLRATHGVSISHRSIGS 146
>sp|Q16AF4|RL3_ROSDO 50S ribosomal protein L3 OS=Roseobacter denitrificans (strain ATCC
33942 / OCh 114) GN=rplC PE=3 SV=1
Length = 286
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 13/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++Q+ ++ R K
Sbjct: 3 RSGVIAKKVGMTRLFMEDGKQIPVTVLQLDKLQVV-------------AQRTSEKDGYSA 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ +GA + ++ G F + V PK+K+ F + P+ ++ G +TA H+ +F+
Sbjct: 50 VQLGAGTAKAKRTSQAMRGHFAAAKVEPKRKVAEFRVDPENLIGVGEEITANHYFEGQFV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G ++ +GF G MKR F G+ A+HGV+ SHR G +V+ G
Sbjct: 110 DVAGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKG 160
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.140 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,985,562
Number of Sequences: 539616
Number of extensions: 5594280
Number of successful extensions: 12807
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 11700
Number of HSP's gapped (non-prelim): 874
length of query: 296
length of database: 191,569,459
effective HSP length: 117
effective length of query: 179
effective length of database: 128,434,387
effective search space: 22989755273
effective search space used: 22989755273
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)