Query psy451
Match_columns 296
No_of_seqs 173 out of 1231
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 19:00:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy451.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/451hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ftc_C L3MT, MRP-L3, mitochond 100.0 1.2E-72 4E-77 507.9 18.2 168 117-296 1-168 (211)
2 3r8s_D 50S ribosomal protein L 100.0 2.9E-72 9.8E-77 504.4 14.4 167 117-296 1-167 (209)
3 3v2d_E 50S ribosomal protein L 100.0 5.3E-70 1.8E-74 488.8 13.5 161 118-296 2-162 (206)
4 2zjr_B 50S ribosomal protein L 100.0 4.7E-66 1.6E-70 465.4 14.6 161 118-296 2-162 (211)
5 3bbo_F Ribosomal protein L3; l 100.0 1.3E-66 4.4E-71 480.7 4.7 172 109-296 37-210 (259)
6 1vq8_B 50S ribosomal protein L 100.0 2.5E-56 8.4E-61 425.3 11.2 166 116-296 38-260 (338)
7 2zkr_b 60S ribosomal protein L 100.0 1.5E-46 5.1E-51 363.6 6.1 159 116-296 42-274 (403)
8 3j21_C 50S ribosomal protein L 100.0 1E-36 3.5E-41 291.4 11.9 166 115-296 36-276 (365)
9 3u5e_B 60S ribosomal protein L 100.0 6.4E-35 2.2E-39 280.8 13.9 176 116-296 42-272 (387)
10 4a17_B RPL3, ribosomal protein 100.0 1.6E-34 5.5E-39 278.3 12.5 164 116-296 42-270 (391)
11 3iz5_C 60S ribosomal protein L 100.0 1.8E-34 6E-39 277.9 12.7 175 116-296 42-275 (389)
12 3cgm_A SLYD, peptidyl-prolyl C 20.6 59 0.002 27.1 2.8 28 124-151 86-114 (158)
13 2k5f_A Ferrous iron transport 20.6 1.1E+02 0.0037 23.8 4.2 86 172-264 8-101 (105)
14 1vpz_A Carbon storage regulato 20.3 1E+02 0.0034 23.4 3.7 28 120-150 15-42 (73)
15 4dt4_A FKBP-type 16 kDa peptid 20.3 67 0.0023 27.3 3.1 28 124-151 114-142 (169)
No 1
>2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=1.2e-72 Score=507.87 Aligned_cols=168 Identities=45% Similarity=0.801 Sum_probs=164.1
Q ss_pred eeeeeEEEeecceeecCCCcEEEeeEEEecCeEEEEEeCCCCCCCCCCCCCCCCCCCcceEEEeccccCCCcCChhhcch
Q psy451 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGL 196 (296)
Q Consensus 117 r~GlIg~KiGMt~i~~~~G~~vpvTVLqv~pn~Vv~~kt~E~~~~~~~~~~~~~kdgY~avqVG~~~~~~~~~tKp~~G~ 196 (296)
|+||||+||||||+||+||++|||||||++||+|+|++|.|+| +|||+|||||+++.+++++|||++||
T Consensus 1 R~Gllg~KiGMt~if~~~G~~ipvTVl~~~~~~V~q~kt~e~~-----------~dGY~Avqvg~~~~~~~~~~kp~~Gh 69 (211)
T 2ftc_C 1 RVGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENC-----------NGKMATLSVGGKTVSRFRKATSILEF 69 (211)
T ss_pred CceEEEEEcceEEEECCCCcEEEEEEEEEcCCEEEEEEccccC-----------CCCEEEEEEeeeecccccCChhHhhh
Confidence 6899999999999999999999999999999999999999943 59999999999999999999999999
Q ss_pred HHhcCCCCCceEEEEEeCCCCCCCCCCeeecccCCCCCeeEEEEEeeeeccccceeeeccCCCCCCCCCCCCcCCCcccC
Q psy451 197 FKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIA 276 (296)
Q Consensus 197 F~kaGv~pKr~L~EFrVs~~a~l~~Gt~L~a~hF~~Gq~VDV~G~TkGKGFqGVmKRwGFkGgPaSHG~sK~HRrpGSIG 276 (296)
|+|||++||++|+||++++++.+++|++|+|++|++||+|||+|+|||||||||||||||+|+|+|||+|++||+|||||
T Consensus 70 f~kagv~pkr~l~Efrv~~~~~~~~G~~l~v~~F~~Gq~VDV~g~sKGKGFqGv~KR~gf~~~p~sHG~s~~hR~~GSiG 149 (211)
T 2ftc_C 70 YRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVA 149 (211)
T ss_pred HHHcCCCcccEEEEEEeCCCCccccCCEEEhHhccCCceEEEEEEEcCCcceeceeecCCCCCCcccCCCCCCCCCcccC
Confidence 99999999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCCcCCCCCCC
Q psy451 277 SGAGKARVYPGGVLQRGLKC 296 (296)
Q Consensus 277 ~~~~PgRV~pGkKMpG~mG~ 296 (296)
++ +|+|||||+|||||||+
T Consensus 150 ~~-~PgRV~kgkkmaG~mG~ 168 (211)
T 2ftc_C 150 TG-DIGRVWPGTKMPGKMGN 168 (211)
T ss_pred CC-CCCeecCCcccCCCCCC
Confidence 99 99999999999999995
No 2
>3r8s_D 50S ribosomal protein L3; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_B 1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D ...
Probab=100.00 E-value=2.9e-72 Score=504.42 Aligned_cols=167 Identities=25% Similarity=0.430 Sum_probs=164.0
Q ss_pred eeeeeEEEeecceeecCCCcEEEeeEEEecCeEEEEEeCCCCCCCCCCCCCCCCCCCcceEEEeccccCCCcCChhhcch
Q psy451 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGL 196 (296)
Q Consensus 117 r~GlIg~KiGMt~i~~~~G~~vpvTVLqv~pn~Vv~~kt~E~~~~~~~~~~~~~kdgY~avqVG~~~~~~~~~tKp~~G~ 196 (296)
+.||||+||||||+||+||++|||||||++||+|+|++|.| +|||+|||||+++.+++++|||++||
T Consensus 1 m~Glig~KiGMt~if~~~G~~ipvTVl~~~~~~V~q~kt~e-------------~dGY~Avqvg~g~~~~~~~~Kp~~Gh 67 (209)
T 3r8s_D 1 MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLA-------------NDGYRAIQVTTGAKKANRVTKPEAGH 67 (209)
T ss_dssp CCCEEEEEEEEEEEECTTCCEEEEEEEECCCEEEEEEECHH-------------HHSSCEEEEEESCCCGGGSCHHHHHH
T ss_pred CcEEEEEEeceeEEECCCCcEEEEEEEEecCCEEEEEEccC-------------CCCeEEEEEEEeecCcccCCHHHhhH
Confidence 36999999999999999999999999999999999999999 89999999999999999999999999
Q ss_pred HHhcCCCCCceEEEEEeCCCCCCCCCCeeecccCCCCCeeEEEEEeeeeccccceeeeccCCCCCCCCCCCCcCCCcccC
Q psy451 197 FKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIA 276 (296)
Q Consensus 197 F~kaGv~pKr~L~EFrVs~~a~l~~Gt~L~a~hF~~Gq~VDV~G~TkGKGFqGVmKRwGFkGgPaSHG~sK~HRrpGSIG 276 (296)
|+|||++||++|+||++++++.|++|++|+|++|++||+|||+|+|||||||||||||||+++|+|||+|++||+|||||
T Consensus 68 f~kagv~pkr~l~Efrv~~~~~~~~G~~i~v~~F~~G~~VDV~g~sKGKGFqGv~KR~gf~~~p~sHG~s~~hR~~GsiG 147 (209)
T 3r8s_D 68 FAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIG 147 (209)
T ss_dssp HHHHTCCCCSEEEEEECCTTCCCCTTCEECGGGGGSCCEEEEEEECCCCCEECHHHHHCCCCCCSSTTCCSCSSSCCCCC
T ss_pred HHHcCCCCCeEEEEEecCCcccCCCCCEEEeeeEcCCCEEEEEEEEeccccceeeeEcCCCCCCcccCCCCCCCCCeeCC
Confidence 99999999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCCcCCCCCCC
Q psy451 277 SGAGKARVYPGGVLQRGLKC 296 (296)
Q Consensus 277 ~~~~PgRV~pGkKMpG~mG~ 296 (296)
++++|+|||||+|||||||+
T Consensus 148 ~~~~P~rV~kgkkmaG~mG~ 167 (209)
T 3r8s_D 148 QNQTPGKVFKGKKMAGQMGN 167 (209)
T ss_dssp CBTTBCSCCTTCCCSEECSS
T ss_pred CCCCCCcCcCCCccCCCCCC
Confidence 99999999999999999995
No 3
>3v2d_E 50S ribosomal protein L3; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E 2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E 2wrj_E 2wrl_E 2wro_E 2wrr_E ...
Probab=100.00 E-value=5.3e-70 Score=488.83 Aligned_cols=161 Identities=29% Similarity=0.509 Sum_probs=157.9
Q ss_pred eeeeEEEeecceeecCCCcEEEeeEEEecCeEEEEEeCCCCCCCCCCCCCCCCCCCcceEEEeccccCCCcCChhhcchH
Q psy451 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLF 197 (296)
Q Consensus 118 ~GlIg~KiGMt~i~~~~G~~vpvTVLqv~pn~Vv~~kt~E~~~~~~~~~~~~~kdgY~avqVG~~~~~~~~~tKp~~G~F 197 (296)
.||||+||||||+||+ |++|||||||++||+|+|++|.| +|||+|||||+++.+++++|||++|||
T Consensus 2 ~Gllg~KiGMt~if~~-G~~ipvTVi~~~~~~V~q~kt~e-------------~dGY~Avqvg~~~~~~~~~~kp~~Ghf 67 (206)
T 3v2d_E 2 KGILGVKVGMTRIFRD-DRAVPVTVILAGPCPVVQRRTPE-------------KDGYTAVQLGFLPQNPKRVNRPLKGHF 67 (206)
T ss_dssp CEEEEEEEEEEEEESS-SCEEEEEEEECCCEEEEEEECHH-------------HHSSCEEEEEEEECCGGGCCHHHHHHH
T ss_pred ceEEEEEccceeEEcC-CCEEEEEEEEecCCEEEEEEccC-------------cCCeEEEEEEeccCCccCCCHHHhhhH
Confidence 5999999999999999 99999999999999999999999 899999999999999999999999999
Q ss_pred HhcCCCCCceEEEEEeCCCCCCCCCCeeecccCCCCCeeEEEEEeeeeccccceeeeccCCCCCCCCCCCCcCCCcccCC
Q psy451 198 KNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277 (296)
Q Consensus 198 ~kaGv~pKr~L~EFrVs~~a~l~~Gt~L~a~hF~~Gq~VDV~G~TkGKGFqGVmKRwGFkGgPaSHG~sK~HRrpGSIG~ 277 (296)
+|||++|+++|+||++++ ++|++|+|++|++||+|||+|+|||||||||||||||+++|+|||+|++||+|||||+
T Consensus 68 ~kagv~pkr~l~Efrv~~----~~G~~i~v~~F~~G~~VDV~g~sKGKGFqGv~KR~gf~~~p~tHG~s~~hR~~GsiG~ 143 (206)
T 3v2d_E 68 AKAGVEPVRILREIRDFN----PEGDTVTVEIFKPGERVDVTGTSKGRGFAGVMKRWNFAGGPDSHGAHKIHRHPGSIGN 143 (206)
T ss_dssp HTTCCCCEEEEEEEETCC----CSSSEECGGGCCTTCEEEEEEECCCCCEECHHHHSCCCCCCSSTTCCSCTTCCCCCCC
T ss_pred HHcCCCcCeEEEEEECCC----CCCCEEEeeeecCCCEEEEEEEEeccccceeeeEcccCCCCcccCCCCCCCCCeeCCC
Confidence 999999999999999975 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCcCCCCCCC
Q psy451 278 GAGKARVYPGGVLQRGLKC 296 (296)
Q Consensus 278 ~~~PgRV~pGkKMpG~mG~ 296 (296)
+++|+|||||+|||||||+
T Consensus 144 ~~~P~rV~kgkkmaG~mG~ 162 (206)
T 3v2d_E 144 RKTPGRVYKGKKMAGHYGA 162 (206)
T ss_dssp BTTBCSCCTTCCCCEECSS
T ss_pred CCCCCcCcCCCccCCCCCC
Confidence 9999999999999999995
No 4
>2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B* 1sm1_B* 1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B 1nkw_B 3cf5_B* 3dll_B* 3pio_B* 3pip_B* 1pnu_B 1pny_B 1vor_E 1vou_E 1vow_E 1voy_E ...
Probab=100.00 E-value=4.7e-66 Score=465.36 Aligned_cols=161 Identities=29% Similarity=0.482 Sum_probs=157.5
Q ss_pred eeeeEEEeecceeecCCCcEEEeeEEEecCeEEEEEeCCCCCCCCCCCCCCCCCCCcceEEEeccccCCCcCChhhcchH
Q psy451 118 TGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLF 197 (296)
Q Consensus 118 ~GlIg~KiGMt~i~~~~G~~vpvTVLqv~pn~Vv~~kt~E~~~~~~~~~~~~~kdgY~avqVG~~~~~~~~~tKp~~G~F 197 (296)
+||||+|+||||||++ |..+||||||++||+|+++++.| +|||+|+|||+++.+++++|||++|||
T Consensus 2 ~g~lg~K~GMT~i~~~-g~~~pVTVie~~p~~V~~~kt~~-------------~dgy~avqvg~~~~~~~~~tkp~~g~~ 67 (211)
T 2zjr_B 2 KGILGTKIGMTQIWKN-DRAIPVTVVLAGPCPIVQRKTAQ-------------TDGYEAVQIGYAPKAERKVNKPMQGHF 67 (211)
T ss_dssp CEEEEEEEEEEEEEET-TEEEEEEEEECCCEEEEEEECTT-------------TTSSCEEEEECSCCCGGGCCHHHHHHH
T ss_pred eeEeEEecCcEeEEeC-CCEEEEEEEEeCCcEEEEEecee-------------cCCCcEEEEEEEEecccccChhhhhhH
Confidence 5999999999999999 99999999999999999999999 899999999999999999999999999
Q ss_pred HhcCCCCCceEEEEEeCCCCCCCCCCeeecccCCCCCeeEEEEEeeeeccccceeeeccCCCCCCCCCCCCcCCCcccCC
Q psy451 198 KNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIAS 277 (296)
Q Consensus 198 ~kaGv~pKr~L~EFrVs~~a~l~~Gt~L~a~hF~~Gq~VDV~G~TkGKGFqGVmKRwGFkGgPaSHG~sK~HRrpGSIG~ 277 (296)
+|+|++||++|+||+|++ ++|++|+|++|++||+|||+|+|||||||||||||||+++|+|||+|++||++||||+
T Consensus 68 ~kagv~~k~~l~Efrv~~----~~G~~i~v~~F~~G~~VDV~g~tKGKGFqGv~KR~gf~~~p~sHG~s~~hR~~GsiG~ 143 (211)
T 2zjr_B 68 AKAGVAPTRILREFRGFA----PDGDSVNVDIFAEGEKIDATGTSKGKGTQGVMKRWNFAGGPASHGSKKWHRRPGSIGQ 143 (211)
T ss_dssp HTTTCCCCSCEEEETTCC----CSSEECSTTTSCTTCEEEEEEECCEEEEECHHHHHCCCCCCSSSSCSSCSCSCCCCCC
T ss_pred HHcCCCCCcEEEEEEcCC----cCCCEeEhhhhcCCCceEEEEEEcCCcceeceeecCCCCCCcccCCCCCCCCCcccCC
Confidence 999999999999999965 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCcCCCCCCC
Q psy451 278 GAGKARVYPGGVLQRGLKC 296 (296)
Q Consensus 278 ~~~PgRV~pGkKMpG~mG~ 296 (296)
+++|+|||||+|||||||+
T Consensus 144 ~~~PgRV~kgkkmaG~mG~ 162 (211)
T 2zjr_B 144 RKTPGRVYKGKRMAGHMGM 162 (211)
T ss_dssp SSTTCSCCTTCCCCEEEEC
T ss_pred CCCCCcCcCCCccCCCCCC
Confidence 9999999999999999995
No 5
>3bbo_F Ribosomal protein L3; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.3e-66 Score=480.69 Aligned_cols=172 Identities=26% Similarity=0.393 Sum_probs=108.8
Q ss_pred CCCCCCCceeeeeEEEeecceeecCCCcEEEeeEEEecCeEE-EEEeCCCCCCCCCCCCCCCCCCCcceEEEeccccCCC
Q psy451 109 LEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI-IKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPS 187 (296)
Q Consensus 109 ~~w~~~s~r~GlIg~KiGMt~i~~~~G~~vpvTVLqv~pn~V-v~~kt~E~~~~~~~~~~~~~kdgY~avqVG~~~~~~~ 187 (296)
..|.+ .|+||||+|+||||||++||..+||||||++||+| ++++|.| .|||.|+|||+++.+++
T Consensus 37 ~~~~~--~~~G~lG~K~GMT~if~e~G~~vPVTVle~~p~~Vv~q~kt~e-------------~dGy~Avqvg~~~~k~k 101 (259)
T 3bbo_F 37 SASLE--AGVGVMATKLGMMSFFEESGTVVPVTVVGFREGNIVTQIKTEA-------------TDGYNAVQVGYRRVRDR 101 (259)
T ss_dssp -----------------------------------------------------------------------------CCS
T ss_pred ccccc--ceeEEEEEecCcEEEEccCCeEEEEEEEEECCCEEEEEEeecC-------------CCCcEEEEEEEeeechh
Confidence 34544 78999999999999999999999999999999999 8999888 89999999999999999
Q ss_pred cCChhhcchHHhcCCCCCceEEEEEeCCCCCCCCCCeeeccc-CCCCCeeEEEEEeeeeccccceeeeccCCCCCCCCCC
Q psy451 188 LYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAH-FRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVT 266 (296)
Q Consensus 188 ~~tKp~~G~F~kaGv~pKr~L~EFrVs~~a~l~~Gt~L~a~h-F~~Gq~VDV~G~TkGKGFqGVmKRwGFkGgPaSHG~s 266 (296)
++|||+.|||+|+|++||++|+||+|++++++++|++|+|++ |++||+|||+|+|||||||||||||||+|+|+||| |
T Consensus 102 ~~tKp~~Ghf~kagv~~kr~l~Efrv~~~~~~~~G~~i~v~~vF~~Gq~VDV~G~TKGKGFqGv~KRwgf~g~p~sHG-s 180 (259)
T 3bbo_F 102 KLTKPEMGHLEKSGIIPLRHLQEFRLQSIDGFEVTQKLDFGELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGQMTHG-S 180 (259)
T ss_dssp SCCHHHHTTCSSCCCCCSSCCCCCCSCCCCTTTTCCCCSSCSSSCSSSCCCCCCBCCCCSSCCSSSSSCCCCCCSSSC-S
T ss_pred hCChhhhhhHHHcCCCCCcEEEEEecCChhhcccccEeehhheecCCCEEEEEEEecCCcceeeeeecCcCCCCCcCC-C
Confidence 999999999999999999999999999888899999999997 99999999999999999999999999999999999 8
Q ss_pred CCcCCCcccCCCCCCCcccCCCcCCCCCCC
Q psy451 267 KSHRRGGCIASGAGKARVYPGGVLQRGLKC 296 (296)
Q Consensus 267 K~HRrpGSIG~~~~PgRV~pGkKMpG~mG~ 296 (296)
++||++||||+|++|+|||||+|||||||+
T Consensus 181 k~hR~~GSiG~~~~PgRV~kGkkMaGqmG~ 210 (259)
T 3bbo_F 181 KSHRQLGSIGAGTTPGRVYKGKKMPGRMGG 210 (259)
T ss_dssp STTTSCCCCSCSSCCTTTTTTSCCCCCCCC
T ss_pred CCCCCCcccCCCCCCCcCcCCCccCCCCCC
Confidence 999999999999999999999999999995
No 6
>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B* 1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B* 1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B* 1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ...
Probab=100.00 E-value=2.5e-56 Score=425.25 Aligned_cols=166 Identities=21% Similarity=0.218 Sum_probs=151.9
Q ss_pred ceeeeeEEEeecceeecCCCc----------EEEeeEEEecCeEEEEEeCCCCCCCCCCCCCCCCCCCcceEEEecc---
Q psy451 116 KRTGLIGKIIGQYPLWMKNGE----------KCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAE--- 182 (296)
Q Consensus 116 ~r~GlIg~KiGMt~i~~~~G~----------~vpvTVLqv~pn~Vv~~kt~E~~~~~~~~~~~~~kdgY~avqVG~~--- 182 (296)
.++||||+|+|||+||++||. .+||||||++||+|+++++.| +|||+ +|+|++
T Consensus 38 ~l~g~lG~K~GMT~i~~~~g~~~s~~~gke~~vpVTVie~~p~~V~~vk~~~-------------~dgy~-lq~~~~v~a 103 (338)
T 1vq8_B 38 GVQGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYE-------------DTPYG-QRPLTEVWT 103 (338)
T ss_dssp EECCEEEEEEEEEEEEEECCCTTCTTTTSEEEEEEEEEECCCEEEEEEEEEE-------------EETTE-EEEEEEEEC
T ss_pred eEEEEEEEecCCEEEEeECCccCCccCCceeEEEEEEEEeCCcEEEEEEeee-------------ccCce-eEeeeeEec
Confidence 688999999999999999997 999999999999999999999 89999 999987
Q ss_pred ----ccCCCcCChhhc-------chHH--------------------h-cCCCC-CceEEEEEeCCCC-----C-----C
Q psy451 183 ----SGDPSLYTKEYC-------GLFK--------------------N-SGVPP-KKKLCRFIITPDA-----M-----L 219 (296)
Q Consensus 183 ----~~~~~~~tKp~~-------G~F~--------------------k-aGv~p-Kr~L~EFrVs~~a-----~-----l 219 (296)
+..+++++||+. |||+ + +|+++ |++|+||+|++.+ + +
T Consensus 104 ~~~~~~~~r~~~kp~~~~~~~~~~~~~~~~~~~~~~~ir~i~~tqp~k~agv~~kk~~l~E~rv~~~~~~~k~~~a~~~l 183 (338)
T 1vq8_B 104 DEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIV 183 (338)
T ss_dssp SCCCTTGGGTSCCCSSCCHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCTTSCCCSCCEEEEEEECSCHHHHHHHHHHHH
T ss_pred cccchhhcccccccccccchhhHHHHHhhhcccceeEEEEEEEeccccccCCCccCCEEEEEEecCcchhhhhhhhhhcc
Confidence 334577888876 7887 6 79996 8999999998654 2 3
Q ss_pred CCCCeeec-ccCCCCCeeEEEEEeeeeccccceeeeccCCCCCCCCCCCCcCCCcccCCCCCCCcccCCCcCCCCCCC
Q psy451 220 PPGTPLTA-AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296 (296)
Q Consensus 220 ~~Gt~L~a-~hF~~Gq~VDV~G~TkGKGFqGVmKRwGFkGgPaSHG~sK~HRrpGSIG~~~~PgRV~pGkKMpG~mG~ 296 (296)
++|++|+| ++|.+||+|||+|+|||||||||||||||+++|+|||+|++||++||||+ .+|+|||||++||||||+
T Consensus 184 ~~G~~i~v~~vF~~Gq~VDV~gvTKGKGFqGv~KRwgf~~~p~sHG~sk~hR~~GsiG~-~~P~RV~~g~kmaGqmG~ 260 (338)
T 1vq8_B 184 EDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGP-WNPSRVRSTVPQQGQTGY 260 (338)
T ss_dssp HHTCEECSTTTCCTTCEEEEEEECCCCCEECHHHHHCCCCCCGGGGSSSCSSCCSCSCC-SSSSSCCTTSCCCEECSC
T ss_pred CCCcEEchhhcccCCCceeeEEEEeCCCceeeeeecCCCCCCcccCCCccCCCCcccCC-CCCCeeccCCcCCCCcCC
Confidence 55999999 79999999999999999999999999999999999999999999999996 569999999999999996
No 7
>2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.5e-46 Score=363.63 Aligned_cols=159 Identities=20% Similarity=0.218 Sum_probs=135.1
Q ss_pred ceeeeeEEEeecceeecCC----------CcEEEeeEEEecCeEEEEEeCCCCCCCCCCCCCCCCCCCcceEEEecc---
Q psy451 116 KRTGLIGKIIGQYPLWMKN----------GEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAE--- 182 (296)
Q Consensus 116 ~r~GlIg~KiGMt~i~~~~----------G~~vpvTVLqv~pn~Vv~~kt~E~~~~~~~~~~~~~kdgY~avqVG~~--- 182 (296)
.++|++|+|+|||+||+++ |.++||||||++||+|++++ ||.+++.|..
T Consensus 42 ~ltgflGyKaGMThi~~~~drpgS~~~~kev~~pVTVlEtpP~~Vvgvr------------------GY~~~~~Gl~~~~ 103 (403)
T 2zkr_b 42 HLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVIVGIV------------------GYVETPRGLRTFK 103 (403)
T ss_dssp GGGSCEEEEEEEEEEEEECCCTTSTTCSCEEEEEEEEEECCCBEEEEEE------------------EEEEETTEEEEEE
T ss_pred eeeEEEEEccCCeEEEeeccCCCCccCCCceEEEEEEEEcCCCEEEEEE------------------eEEEecCCcccce
Confidence 6899999999999999999 89999999999999999996 6666665543
Q ss_pred ccCCCcCC----------------hhhcchHHh----------------------------------cCCC-CCceEEEE
Q psy451 183 SGDPSLYT----------------KEYCGLFKN----------------------------------SGVP-PKKKLCRF 211 (296)
Q Consensus 183 ~~~~~~~t----------------Kp~~G~F~k----------------------------------aGv~-pKr~L~EF 211 (296)
++-..+++ |+..++|++ ++++ +|++|+||
T Consensus 104 ~vwa~~ls~e~~Rr~~kn~~~~~kk~~~~~~kk~~~~~~~~~i~~~l~~~~k~~~~iRvi~hTq~~~~~l~qkk~~l~E~ 183 (403)
T 2zkr_b 104 TIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEV 183 (403)
T ss_dssp EEECSCCCGGGGCCCCCCSSCCSCCCCCCCCCCCCCHHHHHHHHHHHHHHSCCCSSCEEEEECCGGGSSCSCCCCCCEEE
T ss_pred EEeeccCChHHhhhhhcccccchhhhhhhcccccccchhhhhHHHHHHHhhccceEEEEEEEecccccccccCCCEEEEE
Confidence 11111111 444555543 5888 89999999
Q ss_pred EeCCCC-----CC---CCCCeeec-ccCCCCCeeEEEEEeeeeccccceeeeccCCCCC-CCCCCCCcCCCcccCCCCCC
Q psy451 212 IITPDA-----ML---PPGTPLTA-AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPA-THGVTKSHRRGGCIASGAGK 281 (296)
Q Consensus 212 rVs~~a-----~l---~~Gt~L~a-~hF~~Gq~VDV~G~TkGKGFqGVmKRwGFkGgPa-SHG~sK~HRrpGSIG~~~~P 281 (296)
+|++.+ ++ .+|++|+| ++|.+||+|||+|+|||||||||||||||+++|+ || +.||++||||++ +|
T Consensus 184 ~v~g~~~~~k~~~A~~~lg~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvkRwg~~~~p~ktH---~~hR~~GsiG~~-~P 259 (403)
T 2zkr_b 184 QVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTH---RGLRKVACIGAW-HP 259 (403)
T ss_dssp EBCSSSHHHHHHHHHHHHHSCBCSTTTCCSSCCCCEEEECCEEEEECHHHHHCCCCCCSSTT---TTTTCCSCSSCS-SS
T ss_pred EecCcchhhhhhhhhccCCcEEchhhhccCCceEEEEEeecCCcceeceeecCcCCCCcccc---cccCCCcccCCC-CC
Confidence 998755 35 89999999 7999999999999999999999999999999997 99 579999999954 79
Q ss_pred CcccCCCcCCCCCCC
Q psy451 282 ARVYPGGVLQRGLKC 296 (296)
Q Consensus 282 gRV~pGkKMpG~mG~ 296 (296)
+|||+|++||||||+
T Consensus 260 ~RV~~g~~maGqmG~ 274 (403)
T 2zkr_b 260 ARVAFSVARAGQKGY 274 (403)
T ss_dssp CSCCTTSCCCEEEEC
T ss_pred CeECCCCcCCCCCCc
Confidence 999999999999995
No 8
>3j21_C 50S ribosomal protein L3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1e-36 Score=291.44 Aligned_cols=166 Identities=19% Similarity=0.169 Sum_probs=124.6
Q ss_pred CceeeeeEEEeecceeecCCC---------cEEEeeEEEecCeEEEEEeCCCCCCCCCCCCCCCCCCCcceEEEe---cc
Q psy451 115 SKRTGLIGKIIGQYPLWMKNG---------EKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVG---AE 182 (296)
Q Consensus 115 s~r~GlIg~KiGMt~i~~~~G---------~~vpvTVLqv~pn~Vv~~kt~E~~~~~~~~~~~~~kdgY~avqVG---~~ 182 (296)
...+|++|+|.|||+|..++. ...||||||.+|-.|+.+.-..+ +.|+--.++ ++
T Consensus 36 ~~L~~F~GYKAGMTHiv~~~drpgS~~~kEv~~~VTivEtPPm~vvgi~gY~~-------------tp~Gl~~~~~vwa~ 102 (365)
T 3j21_C 36 VRMLGFAGYKAGMTHILMIDDEPGLTNGKEIFMPVTIIETPPLRVFGIRAYRM-------------GYLGLETATEVIVP 102 (365)
T ss_dssp SEECCEEEEEEEEEEEEEESCSCSSCSSSEEEEEEEEEECCCEEEEEEEEEEE-------------CSSSEEEEEEECCC
T ss_pred ceeeeeeeeccCCeEEEEEcCCCCCcCCCEeeeeeEEEeCCCeEEEEEEEEee-------------cCCCceeEEEEccc
Confidence 368899999999999998764 38899999999999998763221 111100000 11
Q ss_pred ccC--------------------C---C---cCCh-----------hhcchHHh-----------------cCCCCCceE
Q psy451 183 SGD--------------------P---S---LYTK-----------EYCGLFKN-----------------SGVPPKKKL 208 (296)
Q Consensus 183 ~~~--------------------~---~---~~tK-----------p~~G~F~k-----------------aGv~pKr~L 208 (296)
..+ + + .+.+ ..+..+++ .++.-|.+|
T Consensus 103 ~l~~~~~~~~y~~~~~k~~~~~~~e~~Rr~~~~~k~~~~~~~~~~~~~~~~~~k~~~~~~iRvi~hTqp~~~~lqKK~~i 182 (365)
T 3j21_C 103 DFPLDNYPAKERKGKPKPKMTFYKLLERRIATLPKNYTQEMFEQKLGQLEDMIKEGEIVDVRAIVATQPWVIKLKKKPEV 182 (365)
T ss_dssp CCCCCSCCCCCSSSCCCCCCCSCSHHHHSSCCCCSCHHHHHHHHHHHHHHHHHTCTTEEEEEEEEEECCSSCSSCCSCCE
T ss_pred cccchhhccccccccccccccchhhhhhhhhcccccccccchhhHHHHHHHhhccCcceEEEEEEeccccccccccCccE
Confidence 111 0 0 0010 01111112 456556899
Q ss_pred EEEEeCCCC--------CCCCCCeeec-ccCCCCCeeEEEEEeeeeccccceeeeccCCCCCCCCCCCCcCCCcccCCCC
Q psy451 209 CRFIITPDA--------MLPPGTPLTA-AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGA 279 (296)
Q Consensus 209 ~EFrVs~~a--------~l~~Gt~L~a-~hF~~Gq~VDV~G~TkGKGFqGVmKRwGFkGgPaSHG~sK~HRrpGSIG~~~ 279 (296)
+|++|+... .-.+|++|+| ++|.+||+|||+|+|||||||||||||||+++|++||. .||++||||++
T Consensus 183 mEiqV~Ggsv~~k~~~a~~~lG~~i~v~~vF~~ge~VDV~GvTKGKGFqGvvKRwgf~~~p~~hg~--~hR~~GsiG~~- 259 (365)
T 3j21_C 183 MEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSK--GRRKVGSIGPW- 259 (365)
T ss_dssp EEEEEECSSHHHHHHHHHHHTTCBCCHHHHCCTTCEEEEEEECCCCEEECHHHHHCCCCCSSCCSS--CSSCCCCSCCS-
T ss_pred EEEEecCCCHHHHHHHHHhhcCcEEechhccCCCCEEEEEEEeeccccccceeeccCCCCCCCCCC--CCCCCcccCCC-
Confidence 999998753 1268999999 69999999999999999999999999999999999995 49999999997
Q ss_pred CCCcccCCCcCCCCCCC
Q psy451 280 GKARVYPGGVLQRGLKC 296 (296)
Q Consensus 280 ~PgRV~pGkKMpG~mG~ 296 (296)
+|+|||+|++||||||+
T Consensus 260 ~P~rV~~g~~maGqmG~ 276 (365)
T 3j21_C 260 HPARVMWTVPMAGQMGF 276 (365)
T ss_dssp SSCSCCSSSCCCEEESS
T ss_pred CCCcccCCCccCCccCc
Confidence 89999999999999995
No 9
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B 4b6a_B 3izc_C 3izs_C 1s1i_C 3jyw_C
Probab=100.00 E-value=6.4e-35 Score=280.78 Aligned_cols=176 Identities=17% Similarity=0.157 Sum_probs=123.5
Q ss_pred ceeeeeEEEeecceeecCCC----------cEEEeeEEEecCeEEEEEeCCCC-----------CCCCCCC---CCCCCC
Q psy451 116 KRTGLIGKIIGQYPLWMKNG----------EKCRTTLVQVVDNHIIKYIPPEE-----------FKPNRKP---YRGEPK 171 (296)
Q Consensus 116 ~r~GlIg~KiGMt~i~~~~G----------~~vpvTVLqv~pn~Vv~~kt~E~-----------~~~~~~~---~~~~~k 171 (296)
..+|++|+|.|||+|..++. ...||||||++|..|+.+.-..+ |....+. |... +
T Consensus 42 ~L~aF~GYKAGMTHiv~~~drpgS~~~~kEvv~~VTivEtPPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~-k 120 (387)
T 3u5e_B 42 ALTSFLGYKAGMTTIVRDLDRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFY-K 120 (387)
T ss_dssp CCSEEEEEEEEEEEEEEECCCTTSTTTTSEEEEEEEEEECCCEEEEEEEEEEEETTEEEEEEEEECSCCCHHHHGGGC-S
T ss_pred eeeeeeeeccCCeEEEEEccCCCCCcCCCEeeeeeEEEecCCeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhh-c
Confidence 47899999999999996643 38999999999999997763321 0000000 0000 1
Q ss_pred CCcceEEEeccccCCCcC--ChhhcchH------------------HhcCCCC-CceEEEEEeCCCC--------CCCCC
Q psy451 172 RKLGCLLVGAESGDPSLY--TKEYCGLF------------------KNSGVPP-KKKLCRFIITPDA--------MLPPG 222 (296)
Q Consensus 172 dgY~avqVG~~~~~~~~~--tKp~~G~F------------------~kaGv~p-Kr~L~EFrVs~~a--------~l~~G 222 (296)
+.|.+-.-++.....+.- .+.....| ...+++- |.+|+|++|+... .-.+|
T Consensus 121 nw~~skkkaftk~~kk~~~~~~~~~~~~~~~~k~~~viRvi~hTqp~l~~l~qKK~~imEiqV~Ggsv~~k~~~a~~~lg 200 (387)
T 3u5e_B 121 NWYKSKKKAFTKYSAKYAQDGAGIERELARIKKYASVVRVLVHTQIRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHFE 200 (387)
T ss_dssp CTTTSCCCTTTTTGGGGSSSSHHHHHHHHHHHHSCSEEEEEEECCGGGSSCSCCSCCEEEEECCSSCHHHHHHHHHHTTT
T ss_pred ccchhhhhhhhhhcccccchhHHHHHHHHHhhhcccEEEEEEeccccccCccccCceeEEEEecCCCHHHHHHHHHhccC
Confidence 222211111100000000 01111111 1345655 5899999998753 12689
Q ss_pred Ceeec-ccCCCCCeeEEEEEeeeeccccceeeeccCCCC-CCCCCCCCcCCCcccCCCCCCCcccCCCcCCCCCCC
Q psy451 223 TPLTA-AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMP-ATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296 (296)
Q Consensus 223 t~L~a-~hF~~Gq~VDV~G~TkGKGFqGVmKRwGFkGgP-aSHG~sK~HRrpGSIG~~~~PgRV~pGkKMpG~mG~ 296 (296)
++|+| ++|.+||+|||+|+|||||||||||||||+++| +||+ .||++||||+ .+|+|||+|++||||||+
T Consensus 201 ~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvKRwg~~~~p~ktH~---~~R~~GsiG~-~~P~rV~~g~~maGqmG~ 272 (387)
T 3u5e_B 201 KTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPRKTHR---GLRKVACIGA-WHPAHVMWSVARAGQRGY 272 (387)
T ss_dssp CEECGGGTCCTTCEEEEEEECCCCCEECHHHHHCCCCCCTTCTT---CSSSCSCCCC-SSSSSCCTTSCCCEECSC
T ss_pred CEechHHhccCCCEEEEEEEEcCccceeeeeecccCCCCccccC---CCCCCcccCC-CCCCcccCCCccCCCCCC
Confidence 99999 699999999999999999999999999999999 8997 6999999999 579999999999999996
No 10
>4a17_B RPL3, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_B 4a1c_B 4a1e_B
Probab=100.00 E-value=1.6e-34 Score=278.30 Aligned_cols=164 Identities=21% Similarity=0.239 Sum_probs=122.8
Q ss_pred ceeeeeEEEeecceeecCCC----------cEEEeeEEEecCeEEEEEeCCCCCCCCCCCCCCCCCCCcceEEEe---cc
Q psy451 116 KRTGLIGKIIGQYPLWMKNG----------EKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVG---AE 182 (296)
Q Consensus 116 ~r~GlIg~KiGMt~i~~~~G----------~~vpvTVLqv~pn~Vv~~kt~E~~~~~~~~~~~~~kdgY~avqVG---~~ 182 (296)
..+|++|+|.|||+|..++. ...||||||++|..|+.+.-.. .+.|+--.++ ++
T Consensus 42 ~L~aF~GYKAGMTHiv~~~drpgS~~~~kEv~~~VTivEtPPm~vvgi~gY~-------------~tp~Gl~~~~~vwa~ 108 (391)
T 4a17_B 42 HLTAFTGFKAGMTHILREVDRSGSRHNKKEVVEAVTVIECPPMTIVGVVGYI-------------DTPRGLRALTTVWAK 108 (391)
T ss_dssp EECEEEEEEEEEEEEEEECCCTTSTTTTSEEEEEEEEEECCCEEEEEEEEEE-------------EETTEEEEEEEEECS
T ss_pred eEeeeeeeccCCeEEEEEccCCCCCcCCCEeeeeeEEEeCCCeEEEEEEEEe-------------ecCCCceeEEEEccc
Confidence 67899999999999996643 3899999999999999876333 1112111111 11
Q ss_pred ccCC---------------CcCCh--------hhcchH------------------HhcCCCC-CceEEEEEeCCCCC--
Q psy451 183 SGDP---------------SLYTK--------EYCGLF------------------KNSGVPP-KKKLCRFIITPDAM-- 218 (296)
Q Consensus 183 ~~~~---------------~~~tK--------p~~G~F------------------~kaGv~p-Kr~L~EFrVs~~a~-- 218 (296)
..++ +.+|+ .....| ...+++- |.+|+|++|+....
T Consensus 109 ~l~~e~~Rr~~knw~~skkkaftk~~kk~~~~~~~~~~~~~~k~~~viRvi~hTqp~l~~l~qKK~~imEiqV~GGsv~~ 188 (391)
T 4a17_B 109 TIDNNTKKRFYKNWANSNKKAFTHHEKNFDQKAQDLLLKRIEKYCSVVRVIAHTNMSKLNLRQKKNHILEIQVNGGKVAE 188 (391)
T ss_dssp CCCHHHHGGGCSCSTTSCCCTTHHHHHTCCHHHHHHHHHHHHHHCSEEEEEEEECGGGSCSSCCCCEEEEEEEECSCHHH
T ss_pred ccCHHHhhhhcccccccchhhhhhhhhhcchhHHHHHHHHhhhcccEEEEEEeccccccCcCCCCceEEEEEecCCCHHH
Confidence 1100 00111 000011 1345655 58999999987531
Q ss_pred ------CCCCCeeec-ccCCCCCeeEEEEEeeeeccccceeeeccCCCC-CCCCCCCCcCCCcccCCCCCCCcccCCCcC
Q psy451 219 ------LPPGTPLTA-AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMP-ATHGVTKSHRRGGCIASGAGKARVYPGGVL 290 (296)
Q Consensus 219 ------l~~Gt~L~a-~hF~~Gq~VDV~G~TkGKGFqGVmKRwGFkGgP-aSHG~sK~HRrpGSIG~~~~PgRV~pGkKM 290 (296)
-.+|++|+| ++|.+||+|||+|+|||||||||||||||+++| +||+ .||++||||+ .+|+|||+|++|
T Consensus 189 k~~~a~~~lg~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvKRwg~~~~p~ktH~---~~R~~GsiG~-~~P~rV~~g~~m 264 (391)
T 4a17_B 189 KVAFAKSLLEKEVKVDSIFAENEMLDVLGVTKGKGFAGVIKRFGVKHLQKKTHR---GYRKVGCIGA-WHPSRIRFTVPR 264 (391)
T ss_dssp HHHHHHHHTTCEECHHHHCCTTCEEEEEEECCCCCEECHHHHHCCCCCCTTCSS---CSSSCSCSCC-SSSSSCCTTSCC
T ss_pred HHHHHHhhcCCEEehhHhcCCCCEEEEEEEEeCcccceeeeecccCCCCccccc---CCCCCcccCC-CCCCcccCCCcc
Confidence 147999999 699999999999999999999999999999999 8997 6999999999 479999999999
Q ss_pred CCCCCC
Q psy451 291 QRGLKC 296 (296)
Q Consensus 291 pG~mG~ 296 (296)
|||||+
T Consensus 265 aGqmG~ 270 (391)
T 4a17_B 265 AGQLGY 270 (391)
T ss_dssp CEECSC
T ss_pred CCCCCC
Confidence 999996
No 11
>3iz5_C 60S ribosomal protein L3 (L3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_C
Probab=100.00 E-value=1.8e-34 Score=277.92 Aligned_cols=175 Identities=19% Similarity=0.209 Sum_probs=122.7
Q ss_pred ceeeeeEEEeecceeecCCC----------cEEEeeEEEecCeEEEEEeCCCCC-CCCC---------C-C---CCCCCC
Q psy451 116 KRTGLIGKIIGQYPLWMKNG----------EKCRTTLVQVVDNHIIKYIPPEEF-KPNR---------K-P---YRGEPK 171 (296)
Q Consensus 116 ~r~GlIg~KiGMt~i~~~~G----------~~vpvTVLqv~pn~Vv~~kt~E~~-~~~~---------~-~---~~~~~k 171 (296)
..+|++|+|.|||+|..++. ...||||||++|..|+.+.-..+- ++.. . . |... +
T Consensus 42 ~L~aF~GYKAGMTHiv~~~drpgS~~~~kEv~~~VTivEtPPm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~-k 120 (389)
T 3iz5_C 42 HLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRFY-K 120 (389)
T ss_dssp CBSEEEEEEEEEEEEEECCCCCSSSSCSSCEEEEEEEEECCCEEEEEEEEEECCTTCCEEEEEEECSCCSSHHHHTTT-T
T ss_pred eeeeeeeeccCCeEEEEEccCCCCCcCCcEeeeeeEEEeCCCeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhh-c
Confidence 67899999999999996643 489999999999999987633210 0000 0 0 0000 1
Q ss_pred CCcceEEEeccccCCCcCCh-----hhcchH------------------Hhc-CCCC-CceEEEEEeCCCCC-----C--
Q psy451 172 RKLGCLLVGAESGDPSLYTK-----EYCGLF------------------KNS-GVPP-KKKLCRFIITPDAM-----L-- 219 (296)
Q Consensus 172 dgY~avqVG~~~~~~~~~tK-----p~~G~F------------------~ka-Gv~p-Kr~L~EFrVs~~a~-----l-- 219 (296)
+.|.+-.-++... +++... .....| +.. +++- |.+|+|++|+.... +
T Consensus 121 nw~~skkkaftk~-~kk~~~~~g~~~~~~~~~~~~k~~~viRvi~hTqp~l~~~l~qKK~~imEiqVnGgsv~~k~d~a~ 199 (389)
T 3iz5_C 121 NWCKSKKKAFTKY-ALKYDSDAGKKEIQLQLEKMKKYATIVRVIAHTQIRKMKGLKQKKAHLMEIQVNGGTIADKVDYGY 199 (389)
T ss_dssp TTCSCCCSSCSCC-CCCCSHHHHHHHHHHHHHHHHHHTCEEEEEEEECGGGCSSSCCCCCEEEEEEBCCSCHHHHHHHHH
T ss_pred chhhhhhhhhhhh-ccccccchhhhHHHHHHHHhhhcccEEEEEEecccccccCCccCCceEEEEEecCCCHHHHHHHHH
Confidence 1111110000000 001000 000111 122 5555 48999999987531 1
Q ss_pred -CCCCeeec-ccCCCCCeeEEEEEeeeeccccceeeeccCCCC-CCCCCCCCcCCCcccCCCCCCCcccCCCcCCCCCCC
Q psy451 220 -PPGTPLTA-AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMP-ATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC 296 (296)
Q Consensus 220 -~~Gt~L~a-~hF~~Gq~VDV~G~TkGKGFqGVmKRwGFkGgP-aSHG~sK~HRrpGSIG~~~~PgRV~pGkKMpG~mG~ 296 (296)
.+|++|.| ++|.+||+|||+|+|||||||||||||||+++| +||+ .||++||||+ .+|+|||+|++||||||+
T Consensus 200 ~~lg~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvKRwg~~~~p~ktH~---~~R~~GsiG~-~~P~rV~~g~~maGqmG~ 275 (389)
T 3iz5_C 200 KFFEKEVPVEAVFQKDEMVDIIGVTKGKGYEGVVTRWGVTRLPRKTHR---GLRKVACIGA-WHPARVSYTVARAGQNGY 275 (389)
T ss_dssp HHHTSCBCGGGTCCTTCEEEEEEECCEEEEECHHHHHCCCCCCSSCCS---CSSCCSCSSC-SSSSSCCTTSCCCEEEEC
T ss_pred hcCCCEEehhhccCCCCEEEEEEEecCcccccceeecccCCCCccccC---CCCCCcccCC-CCCCcccCCCccCCCCCC
Confidence 47999999 799999999999999999999999999999999 8997 6999999999 579999999999999995
No 12
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=20.60 E-value=59 Score=27.06 Aligned_cols=28 Identities=18% Similarity=0.129 Sum_probs=20.9
Q ss_pred Eeecce-eecCCCcEEEeeEEEecCeEEE
Q psy451 124 IIGQYP-LWMKNGEKCRTTLVQVVDNHII 151 (296)
Q Consensus 124 KiGMt~-i~~~~G~~vpvTVLqv~pn~Vv 151 (296)
++||.= +=+++|..+|++|++|.+..|+
T Consensus 86 ~~G~~~~~~~~~G~~~~~~V~~v~~~~v~ 114 (158)
T 3cgm_A 86 VPGAQFYAQDMEGNPMPLTVVAVEGEEVT 114 (158)
T ss_dssp CTTCEEEEEETTTEEEEEEEEEEETTEEE
T ss_pred ccCCEEEEECCCCCEEEEEEEEECCCEEE
Confidence 345442 3356899999999999998887
No 13
>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum}
Probab=20.60 E-value=1.1e+02 Score=23.83 Aligned_cols=86 Identities=17% Similarity=0.137 Sum_probs=51.6
Q ss_pred CCcceEEEeccccCCCcCChhhcchHHhcCCCCCceEEEEEeCCCC---CCCC-CCeeecccCCCCCeeEEEEEe----e
Q psy451 172 RKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDA---MLPP-GTPLTAAHFRPREFLDVRGLT----V 243 (296)
Q Consensus 172 dgY~avqVG~~~~~~~~~tKp~~G~F~kaGv~pKr~L~EFrVs~~a---~l~~-Gt~L~a~hF~~Gq~VDV~G~T----k 243 (296)
.|-.+..+.... ....+..+.+.|+.|-..+.=.+..+.. .+.+ |+.|.++. ..-+.|.|.-.. .
T Consensus 8 ~G~~~~I~~I~~------~~~l~rrL~~lGl~pG~~V~Vv~~~P~ggpi~V~v~g~~iaL~~-~~A~~I~Ve~~~~~~~~ 80 (105)
T 2k5f_A 8 AGDRAEVTSVAA------EPAVRRRLMDLGLVRGAKLKVLRFAPLGDPIEVNCNGMLLTMRR-NEAEGITVHILAGDEGH 80 (105)
T ss_dssp TTCEEEEEEECS------CHHHHHHHHHHTCSTTCEEEEEEECSSSCSEEEEETTEEEEECH-HHHHHEEEEESCCCCSS
T ss_pred CCCEEEEEEEEC------CHHHHHHHHHcCCCCCCEEEEEEECCCCCCEEEEECCEEEEeCH-HHhCceEEEEccccCCC
Confidence 344455555433 4567788889999999888766655421 1111 33333321 112234444432 3
Q ss_pred eeccccceeeeccCCCCCCCC
Q psy451 244 DRGFQGVMKRWGFKGMPATHG 264 (296)
Q Consensus 244 GKGFqGVmKRwGFkGgPaSHG 264 (296)
|++|++-=.||||.+-...|-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~ 101 (105)
T 2k5f_A 81 PHGWPGFRRRHRFGKRALEHH 101 (105)
T ss_dssp CCCSSCSSCCCCSCSCSSTTC
T ss_pred CCcchhhhhhhcccchhhhhc
Confidence 799999999999988776664
No 14
>1vpz_A Carbon storage regulator homolog; CSRA-like fold, structural genomics, joint center for struct genomics, JCSG; HET: MSE; 2.05A {Pseudomonas aeruginosa} SCOP: b.151.1.1
Probab=20.31 E-value=1e+02 Score=23.35 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=23.0
Q ss_pred eeEEEeecceeecCCCcEEEeeEEEecCeEE
Q psy451 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI 150 (296)
Q Consensus 120 lIg~KiGMt~i~~~~G~~vpvTVLqv~pn~V 150 (296)
+|.+|.|-+=+..+ -|-+|||++..++|
T Consensus 15 vLtRK~GEsI~IGd---dI~ItVl~i~g~qV 42 (73)
T 1vpz_A 15 ILTRRVGETLMVGD---DVTVTVLGVKGNQV 42 (73)
T ss_dssp EEEEETTCEEEETT---TEEEEEEEEETTEE
T ss_pred EEEccCCCEEEeCC---CEEEEEEEEeCCEE
Confidence 78899998877744 58999999988776
No 15
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=20.25 E-value=67 Score=27.26 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=22.5
Q ss_pred Eeecceee-cCCCcEEEeeEEEecCeEEE
Q psy451 124 IIGQYPLW-MKNGEKCRTTLVQVVDNHII 151 (296)
Q Consensus 124 KiGMt~i~-~~~G~~vpvTVLqv~pn~Vv 151 (296)
++||.=.+ +++|..+|+||++|.+..|+
T Consensus 114 ~~G~~~~~~~~~G~~~~~~V~~v~~~~V~ 142 (169)
T 4dt4_A 114 EIGAIMLFTAMDGSEMPGVIREINGDSIT 142 (169)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEETTEEE
T ss_pred CCCcEEEEECCCCCEEEEEEEEEcCCEEE
Confidence 56776555 46899999999999998876
Done!