Your job contains 1 sequence.
>psy451
MALNHNLRLALSNCNRILSRKSNIFETPFLFGCSEVINIRQKKVWIRPPRVKYPLWFLQK
ERAEYIENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGL
IGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVG
AESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRG
LTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGGVLQRGLKC
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy451
(296 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0030686 - symbol:mRpL3 "mitochondrial ribosomal pr... 669 9.4e-66 1
ZFIN|ZDB-GENE-030131-8227 - symbol:mrpl3 "mitochondrial r... 428 3.3e-40 1
UNIPROTKB|Q3ZBX6 - symbol:MRPL3 "39S ribosomal protein L3... 419 2.9e-39 1
RGD|1306391 - symbol:Mrpl3 "mitochondrial ribosomal prote... 414 9.9e-39 1
UNIPROTKB|P18665 - symbol:Mrpl3 "39S ribosomal protein L3... 414 9.9e-39 1
UNIPROTKB|E2R429 - symbol:MRPL3 "Uncharacterized protein"... 411 2.1e-38 1
UNIPROTKB|F1RX24 - symbol:LOC100156322 "Uncharacterized p... 410 2.6e-38 1
UNIPROTKB|K7GPJ6 - symbol:LOC100156322 "Uncharacterized p... 410 2.6e-38 1
MGI|MGI:2137204 - symbol:Mrpl3 "mitochondrial ribosomal p... 406 7.0e-38 1
UNIPROTKB|F1NVG6 - symbol:MRPL3 "Uncharacterized protein"... 392 2.1e-36 1
UNIPROTKB|E7ETU7 - symbol:MRPL3 "39S ribosomal protein L3... 391 2.7e-36 1
UNIPROTKB|H0Y9G6 - symbol:MRPL3 "39S ribosomal protein L3... 391 2.7e-36 1
UNIPROTKB|P09001 - symbol:MRPL3 "39S ribosomal protein L3... 391 2.7e-36 1
UNIPROTKB|D6RC14 - symbol:MRPL3 "39S ribosomal protein L3... 336 1.8e-30 1
WB|WBGene00016142 - symbol:mrps-18C species:6239 "Caenorh... 324 3.4e-29 1
TAIR|locus:2093586 - symbol:RPL3P "ribosomal protein L3 p... 290 1.4e-25 1
POMBASE|SPAC644.17c - symbol:mrpl9 "mitochondrial ribosom... 208 2.4e-19 2
SGD|S000003452 - symbol:MRPL9 "Mitochondrial ribosomal pr... 217 7.5e-18 1
DICTYBASE|DDB_G0288983 - symbol:mrpl3 "ribosomal protein ... 215 8.6e-17 1
TIGR_CMR|SPO_3825 - symbol:SPO_3825 "ribosomal protein L3... 200 4.7e-16 1
CGD|CAL0005707 - symbol:orf19.7485 species:5476 "Candida ... 197 2.1e-14 1
ASPGD|ASPL0000071039 - symbol:AN4308 species:162425 "Emer... 188 4.5e-13 1
UNIPROTKB|E9PF06 - symbol:MRPL3 "39S ribosomal protein L3... 115 4.5e-13 2
TIGR_CMR|NSE_0266 - symbol:NSE_0266 "ribosomal protein L3... 168 2.4e-12 1
TIGR_CMR|DET_0474 - symbol:DET_0474 "ribosomal protein L3... 147 7.1e-12 2
TIGR_CMR|APH_0280 - symbol:APH_0280 "ribosomal protein L3... 159 1.0e-10 1
UNIPROTKB|P60442 - symbol:rplC "50S ribosomal protein L3"... 157 1.7e-10 1
TIGR_CMR|CPS_0873 - symbol:CPS_0873 "ribosomal protein L3... 153 4.8e-10 1
UNIPROTKB|Q9KNY4 - symbol:rplC "50S ribosomal protein L3"... 150 1.3e-09 1
TIGR_CMR|VC_2596 - symbol:VC_2596 "ribosomal protein L3" ... 150 1.3e-09 1
UNIPROTKB|P60438 - symbol:rplC "50S ribosomal subunit pro... 148 3.5e-09 1
TIGR_CMR|GSU_2857 - symbol:GSU_2857 "ribosomal protein L3... 147 5.6e-09 1
TIGR_CMR|ECH_0409 - symbol:ECH_0409 "ribosomal protein L3... 148 1.3e-08 1
TIGR_CMR|SO_0231 - symbol:SO_0231 "ribosomal protein L3" ... 139 1.0e-07 1
TAIR|locus:2053713 - symbol:AT2G43030 species:3702 "Arabi... 142 1.6e-07 1
TIGR_CMR|CBU_0238 - symbol:CBU_0238 "ribosomal protein L3... 136 3.0e-07 1
GENEDB_PFALCIPARUM|PFL2180w - symbol:PFL2180w "50S riboso... 137 1.1e-06 1
UNIPROTKB|Q8I4X7 - symbol:PFL2180w "Mitochondrial ribosom... 137 1.1e-06 1
TIGR_CMR|BA_0110 - symbol:BA_0110 "ribosomal protein L3" ... 117 6.2e-05 1
TIGR_CMR|CHY_2309 - symbol:CHY_2309 "ribosomal protein L3... 111 0.00032 1
TIGR_CMR|CJE_1875 - symbol:CJE_1875 "ribosomal protein L3... 109 0.00040 1
>FB|FBgn0030686 [details] [associations]
symbol:mRpL3 "mitochondrial ribosomal protein L3"
species:7227 "Drosophila melanogaster" [GO:0005762 "mitochondrial
large ribosomal subunit" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0003735 "structural constituent of ribosome"
evidence=ISS] [GO:0005763 "mitochondrial small ribosomal subunit"
evidence=ISS] InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
GO:GO:0006412 GO:GO:0005762 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0087 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
EMBL:AY119240 ProteinModelPortal:Q8MRV7 SMR:Q8MRV7 IntAct:Q8MRV7
STRING:Q8MRV7 PaxDb:Q8MRV7 PRIDE:Q8MRV7 FlyBase:FBgn0030686
InParanoid:Q8MRV7 OrthoDB:EOG4JM655 ArrayExpress:Q8MRV7 Bgee:Q8MRV7
Uniprot:Q8MRV7
Length = 362
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 137/261 (52%), Positives = 176/261 (67%)
Query: 30 LFGCSEVI--NIRQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNNKAFIEEVVHDQCGA 87
L G S V+ +R K RP R++ P WFL+KE +Y + +T NK F+ EV + G
Sbjct: 14 LSGNSSVLVTQVRDKGHLSRP-RLRNPQWFLRKEITKYNDLMTAENKQFVNEVGTNNFGV 72
Query: 88 PAV-KSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVV 146
P V K + P E + T + +R G+I + IGQYPLW+KNGE+ RTTL+Q+V
Sbjct: 73 PVVIKDCLVKTAGPTANEAVW----TPNLRRCGVIARKIGQYPLWLKNGERIRTTLLQIV 128
Query: 147 DNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKK 206
DNH+IKYIPPEE+ P + P K GC+LVG+E+ +P+L TKEY G+F+NSGV PKK
Sbjct: 129 DNHVIKYIPPEEYLPAQVPTVAN-LHKRGCILVGSETTNPALLTKEYAGIFRNSGVLPKK 187
Query: 207 KLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVT 266
L RFI++P+A L PGTPL HFR +F+DVRG TVD GFQGV+KR GFKGMPA+HGVT
Sbjct: 188 NLARFIVSPEAQLAPGTPLNVNHFRVGDFVDVRGKTVDHGFQGVVKRHGFKGMPASHGVT 247
Query: 267 KSHRRGGCIASGAGKARVYPG 287
K+HRR G I G K RV+PG
Sbjct: 248 KTHRRAGNIGGGGEKGRVWPG 268
>ZFIN|ZDB-GENE-030131-8227 [details] [associations]
symbol:mrpl3 "mitochondrial ribosomal protein L3"
species:7955 "Danio rerio" [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
ZFIN:ZDB-GENE-030131-8227 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 GeneTree:ENSGT00390000011422 HOGENOM:HOG000100369
HOVERGEN:HBG002294 OrthoDB:EOG4548ZW EMBL:CR626877 IPI:IPI00759186
UniGene:Dr.78414 Ensembl:ENSDART00000020928 InParanoid:Q1L8V7
Uniprot:Q1L8V7
Length = 345
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 88/221 (39%), Positives = 133/221 (60%)
Query: 67 ENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIG 126
E+LT +N +F++++ ++ K + PLK EP E S+R GL+ +G
Sbjct: 51 EHLTEDNASFLKKLTAEEYDQ-MTKDRLN----PLKDEPWPRHEWVEGSRRVGLVAIKLG 105
Query: 127 QYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDP 186
P+W K+GE+ T++QV D H++K++ E+ Y G L+VG ++ P
Sbjct: 106 MMPVWSKSGERHVVTMLQVKDCHVVKHLSKED-------YNGHTS----ALVVGGKNVSP 154
Query: 187 SLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRG 246
Y +F+N+G+PPK+KL F +T +A++ PGTPL AAHFRP +++DV T+ +G
Sbjct: 155 FHRPVGYLEIFQNAGIPPKQKLTTFCVTDNAIIKPGTPLYAAHFRPGQYVDVTAKTIGKG 214
Query: 247 FQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
FQGVMKRWGFKG PA+HG TK+HRR G + G A+V+ G
Sbjct: 215 FQGVMKRWGFKGQPASHGQTKTHRRPGALGPGGDPAKVFKG 255
>UNIPROTKB|Q3ZBX6 [details] [associations]
symbol:MRPL3 "39S ribosomal protein L3, mitochondrial"
species:9913 "Bos taurus" [GO:0005762 "mitochondrial large
ribosomal subunit" evidence=ISS] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
GO:GO:0006412 GO:GO:0005762 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0087 InterPro:IPR019926 PANTHER:PTHR11229
TIGRFAMs:TIGR03625 PROSITE:PS00474 OMA:HGSVPGH PDB:2FTC PDBsum:2FTC
EMBL:BC103047 IPI:IPI00700936 RefSeq:NP_001073786.1
UniGene:Bt.61013 ProteinModelPortal:Q3ZBX6 STRING:Q3ZBX6
PRIDE:Q3ZBX6 Ensembl:ENSBTAT00000043792 GeneID:614906
KEGG:bta:614906 CTD:11222 GeneTree:ENSGT00390000011422
HOGENOM:HOG000100369 HOVERGEN:HBG002294 InParanoid:Q3ZBX6
OrthoDB:EOG4548ZW EvolutionaryTrace:Q3ZBX6 NextBio:20899349
Uniprot:Q3ZBX6
Length = 348
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 93/223 (41%), Positives = 135/223 (60%)
Query: 67 ENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKRTGLIGKI 124
E+L+ N +F++++V D+ K+ + + PLK EP + P E S R GL+
Sbjct: 51 EHLSEENVSFVKQLVSDEN-----KAQLASKLCPLKDEPWPIHPWE--PGSSRVGLVALK 103
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K+G+K TL+QV D H++KY P E + G K+ L VG ++
Sbjct: 104 LGMMPLWTKDGKKHVVTLLQVQDCHVLKYTPKEN-------HNG----KMAALTVGGKTV 152
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
+ ++ G+PPK+K+ F +T +A++ PGTPL AAHFRP +++DV T+
Sbjct: 153 SRFHKSTSILEFYQELGLPPKQKIKMFNVTDNAVIKPGTPLYAAHFRPGQYVDVTAKTIG 212
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWGFKG PATHG TK+HRR G I++G ARV+PG
Sbjct: 213 KGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTG-DVARVWPG 254
>RGD|1306391 [details] [associations]
symbol:Mrpl3 "mitochondrial ribosomal protein L3" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0005762 "mitochondrial large ribosomal subunit"
evidence=IEA;ISO;ISS] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 RGD:1306391
GO:GO:0006412 GO:GO:0005762 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0087 InterPro:IPR019926 PANTHER:PTHR11229
TIGRFAMs:TIGR03625 PROSITE:PS00474 HOGENOM:HOG000100369
HOVERGEN:HBG002294 OrthoDB:EOG4548ZW IPI:IPI00193636 PIR:S05472
UniGene:Rn.6950 ProteinModelPortal:P18665 STRING:P18665
PhosphoSite:P18665 PRIDE:P18665 UCSC:RGD:1306391 InParanoid:P18665
Genevestigator:P18665 GermOnline:ENSRNOG00000012650 Uniprot:P18665
Length = 347
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 93/223 (41%), Positives = 133/223 (59%)
Query: 67 ENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKRTGLIGKI 124
E+L+ N +F++++V D+ K+ + + PLK EP L P E S R GLI
Sbjct: 51 EHLSEENVSFVKQLVSDEN-----KAQLTSLLNPLKDEPWPLHPWE--PGSSRVGLIALK 103
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K+G+K TL+QV D H++KY P E+ + G K L VG ++G
Sbjct: 104 LGMMPLWTKDGQKHAVTLLQVQDCHVLKYTPKED-------HNG----KTATLTVGGKTG 152
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
+++ G+PPK+ F +T +A++ GTPL AAHFRP +++DV T+
Sbjct: 153 SRLYKANSILEFYRDLGLPPKQTTKIFHVTDNAVIKQGTPLYAAHFRPGQYVDVTAKTIG 212
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWGFKG PA+HG TK+HRR G I++G ARV+PG
Sbjct: 213 KGFQGVMKRWGFKGQPASHGQTKTHRRPGAISTG-DIARVWPG 254
>UNIPROTKB|P18665 [details] [associations]
symbol:Mrpl3 "39S ribosomal protein L3, mitochondrial"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
RGD:1306391 GO:GO:0006412 GO:GO:0005762 GO:GO:0003735
InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 HOGENOM:HOG000100369 HOVERGEN:HBG002294
OrthoDB:EOG4548ZW IPI:IPI00193636 PIR:S05472 UniGene:Rn.6950
ProteinModelPortal:P18665 STRING:P18665 PhosphoSite:P18665
PRIDE:P18665 UCSC:RGD:1306391 InParanoid:P18665
Genevestigator:P18665 GermOnline:ENSRNOG00000012650 Uniprot:P18665
Length = 347
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 93/223 (41%), Positives = 133/223 (59%)
Query: 67 ENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKRTGLIGKI 124
E+L+ N +F++++V D+ K+ + + PLK EP L P E S R GLI
Sbjct: 51 EHLSEENVSFVKQLVSDEN-----KAQLTSLLNPLKDEPWPLHPWE--PGSSRVGLIALK 103
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K+G+K TL+QV D H++KY P E+ + G K L VG ++G
Sbjct: 104 LGMMPLWTKDGQKHAVTLLQVQDCHVLKYTPKED-------HNG----KTATLTVGGKTG 152
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
+++ G+PPK+ F +T +A++ GTPL AAHFRP +++DV T+
Sbjct: 153 SRLYKANSILEFYRDLGLPPKQTTKIFHVTDNAVIKQGTPLYAAHFRPGQYVDVTAKTIG 212
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWGFKG PA+HG TK+HRR G I++G ARV+PG
Sbjct: 213 KGFQGVMKRWGFKGQPASHGQTKTHRRPGAISTG-DIARVWPG 254
>UNIPROTKB|E2R429 [details] [associations]
symbol:MRPL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005762 "mitochondrial large ribosomal
subunit" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412
GO:GO:0005762 GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447
InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 OMA:HGSVPGH GeneTree:ENSGT00390000011422
EMBL:AAEX03013594 RefSeq:XP_003639871.1 Ensembl:ENSCAFT00000009917
GeneID:100856435 KEGG:cfa:100856435 NextBio:20852613 Uniprot:E2R429
Length = 348
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 93/223 (41%), Positives = 133/223 (59%)
Query: 67 ENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKRTGLIGKI 124
E+L+ N F++++ D+ K+ + + PLK EP L P E S R GLI
Sbjct: 51 EHLSEENVTFVKQLASDEN-----KAQLASKLCPLKDEPWPLHPWE--PGSSRVGLIALK 103
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K+G++ TL+QV D H++KY P E + G K+ L VG ++
Sbjct: 104 LGMMPLWTKDGKRHVVTLLQVQDCHVLKYTPKEN-------HNG----KMAALTVGGKTV 152
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
+ ++ G+PPK+K+ F +T +A++ PGTPL AAHFRP +++DV T+
Sbjct: 153 SRFHKSTSVLEFYQELGLPPKQKVKIFHVTDNAVIKPGTPLYAAHFRPGQYVDVTAKTIG 212
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWGFKG PATHG TK+HRR G I++G ARV+PG
Sbjct: 213 KGFQGVMKRWGFKGQPATHGQTKTHRRPGAISTG-DVARVWPG 254
>UNIPROTKB|F1RX24 [details] [associations]
symbol:LOC100156322 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005762 "mitochondrial large ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412
GO:GO:0005762 GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447
InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 GeneTree:ENSGT00390000011422 EMBL:CU469190
RefSeq:XP_001925073.2 UniGene:Ssc.54078 Ensembl:ENSSSCT00000012242
GeneID:100156322 KEGG:ssc:100156322 OMA:LLQXKSP Uniprot:F1RX24
Length = 399
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 92/223 (41%), Positives = 134/223 (60%)
Query: 67 ENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKRTGLIGKI 124
E+L+ N F++++V D+ K+ + + PLK EP + P E S R GLI
Sbjct: 102 EHLSEENVPFVKQLVSDEN-----KAQLASKLCPLKDEPWPIHPWE--PGSSRVGLIALK 154
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K+G+K TL+QV D H++KY P E + G ++ L VG ++
Sbjct: 155 LGMMPLWTKDGQKHVVTLLQVQDCHVLKYTPKEN-------HNG----RMAALTVGGKTV 203
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
+ ++ G+PPK+K+ F +T +A++ PGTPL AAHFRP +++DV T+
Sbjct: 204 SHFHKSASILEFYQELGLPPKQKVKIFNVTENAVIKPGTPLYAAHFRPGQYVDVTAKTIG 263
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVM+RWGFKG PATHG TK+HRR G I++G ARV+PG
Sbjct: 264 KGFQGVMRRWGFKGQPATHGQTKTHRRPGAISTG-DVARVWPG 305
>UNIPROTKB|K7GPJ6 [details] [associations]
symbol:LOC100156322 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000597 InterPro:IPR019927
Pfam:PF00297 InterPro:IPR009000 SUPFAM:SSF50447 InterPro:IPR019926
PANTHER:PTHR11229 TIGRFAMs:TIGR03625 PROSITE:PS00474
GeneTree:ENSGT00390000011422 EMBL:CU469190
Ensembl:ENSSSCT00000035743 Uniprot:K7GPJ6
Length = 348
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 92/223 (41%), Positives = 134/223 (60%)
Query: 67 ENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKRTGLIGKI 124
E+L+ N F++++V D+ K+ + + PLK EP + P E S R GLI
Sbjct: 51 EHLSEENVPFVKQLVSDEN-----KAQLASKLCPLKDEPWPIHPWE--PGSSRVGLIALK 103
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K+G+K TL+QV D H++KY P E + G ++ L VG ++
Sbjct: 104 LGMMPLWTKDGQKHVVTLLQVQDCHVLKYTPKEN-------HNG----RMAALTVGGKTV 152
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
+ ++ G+PPK+K+ F +T +A++ PGTPL AAHFRP +++DV T+
Sbjct: 153 SHFHKSASILEFYQELGLPPKQKVKIFNVTENAVIKPGTPLYAAHFRPGQYVDVTAKTIG 212
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVM+RWGFKG PATHG TK+HRR G I++G ARV+PG
Sbjct: 213 KGFQGVMRRWGFKGQPATHGQTKTHRRPGAISTG-DVARVWPG 254
>MGI|MGI:2137204 [details] [associations]
symbol:Mrpl3 "mitochondrial ribosomal protein L3"
species:10090 "Mus musculus" [GO:0003735 "structural constituent of
ribosome" evidence=ISO] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0005762
"mitochondrial large ribosomal subunit" evidence=ISO] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 EMBL:AB049633
MGI:MGI:2137204 GO:GO:0006412 GO:GO:0005762 GO:GO:0003735
InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 OMA:HGSVPGH CTD:11222 GeneTree:ENSGT00390000011422
HOGENOM:HOG000100369 HOVERGEN:HBG002294 OrthoDB:EOG4548ZW
EMBL:AK077857 EMBL:AK145687 EMBL:AK169272 EMBL:BC034877
IPI:IPI00118235 RefSeq:NP_444389.2 UniGene:Mm.29746
ProteinModelPortal:Q99N95 SMR:Q99N95 IntAct:Q99N95 STRING:Q99N95
PhosphoSite:Q99N95 PaxDb:Q99N95 PRIDE:Q99N95
Ensembl:ENSMUST00000035177 GeneID:94062 KEGG:mmu:94062
UCSC:uc009rht.1 InParanoid:Q99N95 NextBio:352033 Bgee:Q99N95
CleanEx:MM_MRPL3 Genevestigator:Q99N95
GermOnline:ENSMUSG00000032563 Uniprot:Q99N95
Length = 348
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 93/223 (41%), Positives = 134/223 (60%)
Query: 67 ENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKRTGLIGKI 124
E+L+ N +F++++V D+ K+ + + PLK EP L P E S R GLI
Sbjct: 51 EHLSEENLSFVKQLVSDEN-----KTQLTSKLNPLKDEPWPLHPWE--PGSFRVGLIALK 103
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K+G+K TL+QV D H++KY P E+ + G K+ L VG ++
Sbjct: 104 LGMMPLWTKDGQKHAVTLLQVQDCHVLKYTPKED-------HNG----KIAALTVGGKTV 152
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
+++ G+PPK+ F +T +A++ PGTPL AAHFRP +++DV T+
Sbjct: 153 SRFYKPDSRLEFYRDLGLPPKQIHKIFHVTDNAVIKPGTPLYAAHFRPGQYVDVTAKTIG 212
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWGFKG PA+HG TK+HRR G I++G ARV+PG
Sbjct: 213 KGFQGVMKRWGFKGQPASHGQTKTHRRPGAISTG-DIARVWPG 254
>UNIPROTKB|F1NVG6 [details] [associations]
symbol:MRPL3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005762
"mitochondrial large ribosomal subunit" evidence=IEA]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412
GO:GO:0005762 GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447
InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 OMA:HGSVPGH GeneTree:ENSGT00390000011422
EMBL:AADN02001221 IPI:IPI00574225 PRIDE:F1NVG6
Ensembl:ENSGALT00000018940 Uniprot:F1NVG6
Length = 348
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 87/221 (39%), Positives = 127/221 (57%)
Query: 67 ENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIG 126
E+L+ N F+ + ++ A PLK EP E S R G++ +G
Sbjct: 52 EHLSEENVQFLRKAAAEEYRAQTASK-----LCPLKDEPWPLNEWKPDSVRVGVVAVKLG 106
Query: 127 QYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDP 186
P+W K+G+K TL++V D H++KY+ E+ G KL LVG ++ P
Sbjct: 107 MMPIWTKSGKKHAVTLLKVQDCHVLKYVSKED--------SGGKTAKL---LVGGKNVSP 155
Query: 187 SLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRG 246
++ +F+ +GVP K+K+ F +T DA++ PGTPL AAHFRP + +DV T+ +G
Sbjct: 156 FSKSEAEMEIFREAGVPRKQKVTTFNVTDDAIIKPGTPLYAAHFRPGQIVDVTAKTIGKG 215
Query: 247 FQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
FQGVMKRWGFKG PA+HG TK+HRR G I++ +RV+PG
Sbjct: 216 FQGVMKRWGFKGQPASHGQTKTHRRPGAISTNK-VSRVFPG 255
>UNIPROTKB|E7ETU7 [details] [associations]
symbol:MRPL3 "39S ribosomal protein L3, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] InterPro:IPR000597
InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447 InterPro:IPR019926
PANTHER:PTHR11229 TIGRFAMs:TIGR03625 PROSITE:PS00474
HGNC:HGNC:10379 EMBL:AC107027 IPI:IPI00795627
ProteinModelPortal:E7ETU7 SMR:E7ETU7 Ensembl:ENST00000425847
UCSC:uc011blp.2 ArrayExpress:E7ETU7 Bgee:E7ETU7 Uniprot:E7ETU7
Length = 375
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 93/223 (41%), Positives = 128/223 (57%)
Query: 67 ENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKRTGLIGKI 124
E+L+ N FI+++V D+ K+ + + PLK EP + P E S R GLI
Sbjct: 78 EHLSEENVPFIKQLVSDED-----KAQLASKLCPLKDEPWPIHPWE--PGSFRVGLIALK 130
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K+G+K TL+QV D H++KY E G K+ L VG ++
Sbjct: 131 LGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCN-------G----KMATLSVGGKTV 179
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
++ G+PPK+ + F IT +A + PGTPL AAHFRP +++DV T+
Sbjct: 180 SRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIG 239
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWGFKG PATHG TK+HRR G +A+G RV+PG
Sbjct: 240 KGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATG-DIGRVWPG 281
>UNIPROTKB|H0Y9G6 [details] [associations]
symbol:MRPL3 "39S ribosomal protein L3, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] InterPro:IPR000597
InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447 InterPro:IPR019926
PANTHER:PTHR11229 TIGRFAMs:TIGR03625 PROSITE:PS00474 OMA:HGSVPGH
HGNC:HGNC:10379 EMBL:AC107027 Ensembl:ENST00000511168
Uniprot:H0Y9G6
Length = 363
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 93/223 (41%), Positives = 128/223 (57%)
Query: 67 ENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKRTGLIGKI 124
E+L+ N FI+++V D+ K+ + + PLK EP + P E S R GLI
Sbjct: 66 EHLSEENVPFIKQLVSDED-----KAQLASKLCPLKDEPWPIHPWE--PGSFRVGLIALK 118
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K+G+K TL+QV D H++KY E G K+ L VG ++
Sbjct: 119 LGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCN-------G----KMATLSVGGKTV 167
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
++ G+PPK+ + F IT +A + PGTPL AAHFRP +++DV T+
Sbjct: 168 SRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIG 227
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWGFKG PATHG TK+HRR G +A+G RV+PG
Sbjct: 228 KGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATG-DIGRVWPG 269
>UNIPROTKB|P09001 [details] [associations]
symbol:MRPL3 "39S ribosomal protein L3, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005762 "mitochondrial large ribosomal subunit" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] InterPro:IPR000597
InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412 EMBL:CH471052
GO:GO:0003723 GO:GO:0005762 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0087 InterPro:IPR019926 PANTHER:PTHR11229
TIGRFAMs:TIGR03625 PROSITE:PS00474 CTD:11222 HOGENOM:HOG000100369
HOVERGEN:HBG002294 OrthoDB:EOG4548ZW EMBL:X06323 EMBL:CR456720
EMBL:BC003375 IPI:IPI00012353 PIR:A27294 RefSeq:NP_009139.1
UniGene:Hs.205163 ProteinModelPortal:P09001 SMR:P09001
IntAct:P09001 STRING:P09001 PhosphoSite:P09001 DMDM:133116
PaxDb:P09001 PeptideAtlas:P09001 PRIDE:P09001 DNASU:11222
Ensembl:ENST00000264995 GeneID:11222 KEGG:hsa:11222 UCSC:uc003eoh.3
GeneCards:GC03M131181 HGNC:HGNC:10379 HPA:HPA043665 MIM:607118
MIM:614582 neXtProt:NX_P09001 PharmGKB:PA30960 InParanoid:P09001
GenomeRNAi:11222 NextBio:42715 ArrayExpress:P09001 Bgee:P09001
CleanEx:HS_MRPL3 Genevestigator:P09001 GermOnline:ENSG00000114686
Uniprot:P09001
Length = 348
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 93/223 (41%), Positives = 128/223 (57%)
Query: 67 ENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKRTGLIGKI 124
E+L+ N FI+++V D+ K+ + + PLK EP + P E S R GLI
Sbjct: 51 EHLSEENVPFIKQLVSDED-----KAQLASKLCPLKDEPWPIHPWE--PGSFRVGLIALK 103
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESG 184
+G PLW K+G+K TL+QV D H++KY E G K+ L VG ++
Sbjct: 104 LGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCN-------G----KMATLSVGGKTV 152
Query: 185 DPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVD 244
++ G+PPK+ + F IT +A + PGTPL AAHFRP +++DV T+
Sbjct: 153 SRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIG 212
Query: 245 RGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+GFQGVMKRWGFKG PATHG TK+HRR G +A+G RV+PG
Sbjct: 213 KGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATG-DIGRVWPG 254
>UNIPROTKB|D6RC14 [details] [associations]
symbol:MRPL3 "39S ribosomal protein L3, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
InterPro:IPR009000 SUPFAM:SSF50447 InterPro:IPR019926
PANTHER:PTHR11229 PROSITE:PS00474 HOGENOM:HOG000100369
HGNC:HGNC:10379 EMBL:AC107027 IPI:IPI00794210
ProteinModelPortal:D6RC14 SMR:D6RC14 Ensembl:ENST00000507669
ArrayExpress:D6RC14 Bgee:D6RC14 Uniprot:D6RC14
Length = 155
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 72/159 (45%), Positives = 96/159 (60%)
Query: 129 PLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSL 188
PLW K+G+K TL+QV D H++KY E G K+ L VG ++
Sbjct: 3 PLWTKDGQKHVVTLLQVQDCHVLKYTSKENCN-------G----KMATLSVGGKTVSRFR 51
Query: 189 YTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQ 248
++ G+PPK+ + F IT +A + PGTPL AAHFRP +++DV T+ +GFQ
Sbjct: 52 KATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQ 111
Query: 249 GVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GVMKRWGFKG PATHG TK+HRR G +A+G RV+PG
Sbjct: 112 GVMKRWGFKGQPATHGQTKTHRRPGAVATG-DIGRVWPG 149
>WB|WBGene00016142 [details] [associations]
symbol:mrps-18C species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
GO:GO:0005739 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0006412 GO:GO:0000003
GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447
EMBL:FO080680 eggNOG:COG0087 PANTHER:PTHR11229 PROSITE:PS00474
GeneTree:ENSGT00390000011422 PIR:C88445 RefSeq:NP_498045.2
ProteinModelPortal:P49404 SMR:P49404 STRING:P49404 PaxDb:P49404
PRIDE:P49404 EnsemblMetazoa:C26E6.6 GeneID:175666
KEGG:cel:CELE_C26E6.6 UCSC:C26E6.6 CTD:175666 WormBase:C26E6.6
HOGENOM:HOG000021416 InParanoid:P49404 OMA:DNHVIRY NextBio:889130
Uniprot:P49404
Length = 403
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 76/222 (34%), Positives = 119/222 (53%)
Query: 69 LTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQY 128
+++ K +E V+ + A + + + T + + ++I SS+R GL+ + IG
Sbjct: 59 ISQGTKNLLETVIEKETLAASTIAFQNSQETNVSV-----VDIPDSSRRVGLVVRKIGML 113
Query: 129 PLWMKNGEKCRTTLVQVVDNHIIKYIPPEE-FKPNRKPYRGEPKRK--LGCLLVGAESGD 185
P W G + T+++V +NH++ PE +K + R R + + VGA + D
Sbjct: 114 PQWTNEGNRILCTVLEVDENHVVSITSPEAWYKSSAVGKRKAFNRHGPMWRVTVGAGNDD 173
Query: 186 PSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDR 245
P+ YT Y F +G+P K+KL F++T DA+ G PL A HF +++ G T+D
Sbjct: 174 PTKYTLGYRRQFVRAGIPVKEKLGCFLVTEDALPSAGQPLDARHFGVGQYVTATGKTIDW 233
Query: 246 GFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
GFQG M RWG +G P T TKSHRR G + S G AR++PG
Sbjct: 234 GFQGGMHRWGMRGQP-TRRTTKSHRRIGSVGS-VGDARIWPG 273
>TAIR|locus:2093586 [details] [associations]
symbol:RPL3P "ribosomal protein L3 plastid" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS;NAS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM;IDA]
[GO:0005840 "ribosome" evidence=IEA;ISS;NAS] [GO:0006412
"translation" evidence=IEA;ISS;NAS] InterPro:IPR000597
InterPro:IPR019927 Pfam:PF00297 GO:GO:0005739 GO:GO:0009507
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:AB022219 GO:GO:0019843 InterPro:IPR009000
SUPFAM:SSF50447 EMBL:AB028620 eggNOG:COG0087 HOGENOM:HOG000100368
KO:K02906 InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 EMBL:AF370170 IPI:IPI00543781 RefSeq:NP_566579.1
UniGene:At.19059 ProteinModelPortal:Q9LRN8 SMR:Q9LRN8 STRING:Q9LRN8
PaxDb:Q9LRN8 PRIDE:Q9LRN8 EnsemblPlants:AT3G17465.1 GeneID:821011
KEGG:ath:AT3G17465 TAIR:At3g17465 InParanoid:Q9LRN8 OMA:HGSVPGH
PhylomeDB:Q9LRN8 ProtClustDB:CLSN2688490 Genevestigator:Q9LRN8
GermOnline:AT3G17465 Uniprot:Q9LRN8
Length = 324
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 68/178 (38%), Positives = 95/178 (53%)
Query: 110 EITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGE 169
E+++ SKRTG+I G LW K G++ +++ V DN I+ + E
Sbjct: 69 EMSSRSKRTGIIAVKCGMTALWDKWGKRIPISILWVDDN-IVSQVKTVE----------- 116
Query: 170 PKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAH 229
K + L +G P +K G F+ GVP K+KL F +T DA+LP GT L H
Sbjct: 117 -KEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGVRH 175
Query: 230 FRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F P +++DV G+T +GFQG MKR GF GMPA+HG + SHR GG +V+ G
Sbjct: 176 FVPGQYVDVTGITRGKGFQGCMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKG 233
>POMBASE|SPAC644.17c [details] [associations]
symbol:mrpl9 "mitochondrial ribosomal protein subunit L9
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000048
"peptidyltransferase activity" evidence=ISS] [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005762 "mitochondrial large
ribosomal subunit" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0032543 "mitochondrial translation" evidence=NAS]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
PomBase:SPAC644.17c EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0005762 GO:GO:0003735 GO:GO:0032543 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0087 HOGENOM:HOG000100368
InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 OMA:THRAHGS GO:GO:0000048 RefSeq:NP_593885.1
ProteinModelPortal:Q9P6P6 STRING:Q9P6P6 EnsemblFungi:SPAC644.17c.1
GeneID:2543386 KEGG:spo:SPAC644.17c OrthoDB:EOG4KM2CG
NextBio:20804401 Uniprot:Q9P6P6
Length = 259
Score = 208 (78.3 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 46/120 (38%), Positives = 64/120 (53%)
Query: 171 KRKLGCLLVGAESG--DPSLYTKEYCGLFKNSGVPPKKKLCRFIITP-DAMLPPGTPLTA 227
K K G V SG P TK G F + + PK + F + ++ PGT T
Sbjct: 83 KEKHGYYAVQVGSGIRKPKSITKAEQGNFFSHNIYPKMHVREFRVRDASGLVSPGTIFTT 142
Query: 228 AHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+F+P++++DV+G+T +GF GVMKRWGF G A+HG + SHR G +RV PG
Sbjct: 143 DYFKPKQYVDVKGITKGKGFAGVMKRWGFSGGNASHGASLSHRTPGSTGQNTTPSRVLPG 202
Score = 37 (18.1 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 91 KSGIETYNTPLKIEPLQPLEITTSSK 116
K+G++ T L+ + +Q +++ T K
Sbjct: 60 KTGMQVPLTILQFDRVQAIDVRTKEK 85
Score = 37 (18.1 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 45 WIRPPRVKYPLWFLQKERAEYIENLTRNNKAF 76
W ++ PL LQ +R + I+ T+ +
Sbjct: 57 WDEKTGMQVPLTILQFDRVQAIDVRTKEKHGY 88
>SGD|S000003452 [details] [associations]
symbol:MRPL9 "Mitochondrial ribosomal protein of the large
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS] [GO:0002181 "cytoplasmic
translation" evidence=ISS] [GO:0005762 "mitochondrial large
ribosomal subunit" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
SGD:S000003452 EMBL:BK006941 GO:GO:0005762 GO:GO:0003735
GO:GO:0002181 EMBL:X87941 InterPro:IPR009000 SUPFAM:SSF50447
eggNOG:COG0087 HOGENOM:HOG000100368 InterPro:IPR019926
PANTHER:PTHR11229 TIGRFAMs:TIGR03625 PROSITE:PS00474 OMA:THRAHGS
GeneTree:ENSGT00390000011422 OrthoDB:EOG4KM2CG EMBL:X65014
EMBL:Z73004 EMBL:AY558274 PIR:S23455 RefSeq:NP_011736.1
ProteinModelPortal:P31334 SMR:P31334 DIP:DIP-6806N IntAct:P31334
MINT:MINT-613241 STRING:P31334 PaxDb:P31334 EnsemblFungi:YGR220C
GeneID:853135 KEGG:sce:YGR220C CYGD:YGR220c NextBio:973195
Genevestigator:P31334 GermOnline:YGR220C Uniprot:P31334
Length = 269
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 62/203 (30%), Positives = 98/203 (48%)
Query: 87 APAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKN-GEKCRTTLVQV 145
AP++ + I T + P KR GLI + G P + K+ GE+ T+++V
Sbjct: 28 APSIANSITTEAPAINHSPELANARKWLPKRCGLITRKKGMMPYFDKSTGERSAATILEV 87
Query: 146 VDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPK 205
+ +I + E Y C VG S S +++ G F + V PK
Sbjct: 88 NNVEVIMHRTSEV-----NGY-------FACQ-VGYGSRHLSKVSRQMLGHFASKVVNPK 134
Query: 206 KKLCRFIITPD-AMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHG 264
+ + F + + ++PPGT L + F+ +++DVR ++ +GF GVMKR+GFKG+ A+HG
Sbjct: 135 EHVAEFRVKDEKGLIPPGTLLKPSFFKEGQYVDVRSVSKGKGFTGVMKRYGFKGLRASHG 194
Query: 265 VTKSHRRGGCIASGAGKARVYPG 287
+ HR GG RV PG
Sbjct: 195 TSIMHRHGGSYGQNQDPGRVLPG 217
>DICTYBASE|DDB_G0288983 [details] [associations]
symbol:mrpl3 "ribosomal protein L3, mitochondrial"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
dictyBase:DDB_G0288983 GO:GO:0006412 GenomeReviews:CM000154_GR
GO:GO:0005840 GO:GO:0003735 EMBL:AAFI02000129 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0087 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
HAMAP:MF_01325_B RefSeq:XP_636449.1 ProteinModelPortal:Q54I61
STRING:Q54I61 EnsemblProtists:DDB0238285 GeneID:8626901
KEGG:ddi:DDB_G0288983 OMA:GAVPGKK ProtClustDB:CLSZ2728823
Uniprot:Q54I61
Length = 351
Score = 215 (80.7 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 60/178 (33%), Positives = 86/178 (48%)
Query: 112 TTSSKRTGLIGKIIGQYPLWMKNGEKCR-TTLVQVVDNHIIKYIPPEEFKPNRKPYRGEP 170
T S R G IGK +G ++ G+ T++Q+ +N + + RK G
Sbjct: 61 TKVSHRVGAIGKKVGMLTTYI--GDIAYPVTVIQLPNNQVTQI--------KRKVNDG-- 108
Query: 171 KRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAM-LPPGTPLTAAH 229
+ + VGA+ +K G F + VPPK+ L F +T +AM L GTP+ H
Sbjct: 109 ---VDMIQVGADEIKLKNVSKTLQGHFAKANVPPKRVLMEFRVTRNAMNLELGTPILPKH 165
Query: 230 FRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F P + + V+G +GF G MKRW F G PATHGV+ +HR G RV+ G
Sbjct: 166 FLPGQLITVKGTNTGKGFAGGMKRWHFSGQPATHGVSLTHRAIGSTGCRQTPGRVFKG 223
>TIGR_CMR|SPO_3825 [details] [associations]
symbol:SPO_3825 "ribosomal protein L3" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR000597
InterPro:IPR019927 Pfam:PF00297 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
HOGENOM:HOG000100368 KO:K02906 InterPro:IPR019926 PANTHER:PTHR11229
TIGRFAMs:TIGR03625 PROSITE:PS00474 ProtClustDB:PRK00001
HAMAP:MF_01325_B RefSeq:YP_169013.1 ProteinModelPortal:Q5LLU6
SMR:Q5LLU6 GeneID:3192891 KEGG:sil:SPO3825 PATRIC:23381151
OMA:THRAHGS Uniprot:Q5LLU6
Length = 241
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 54/173 (31%), Positives = 90/173 (52%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R+G+I K +G L+M++G++ T++Q+ DN ++ + + + G +LG
Sbjct: 2 RSGIIAKKVGMTRLFMEDGKQIPVTVLQL-DN--LQVVAQRTTEKD-----GYTAVQLG- 52
Query: 177 LLVGAESGDPSL--YTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
+G P + +K G F V PK+KL F ++ DA++ G ++A HF +
Sbjct: 53 ------AGTPKIKRVSKAMRGHFAAQKVEPKRKLAEFRVSEDALIEVGAEISAEHFLTGQ 106
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G ++ +GF G MKR F G+ A+HGV+ SHR G RV+ G
Sbjct: 107 KVDVSGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGRVFKG 159
>CGD|CAL0005707 [details] [associations]
symbol:orf19.7485 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR000597 InterPro:IPR019927
Pfam:PF00297 CGD:CAL0005707 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447 EMBL:AACQ01000039
eggNOG:COG0087 InterPro:IPR019926 PANTHER:PTHR11229
TIGRFAMs:TIGR03625 PROSITE:PS00474 RefSeq:XP_718642.1
ProteinModelPortal:Q5AAK4 STRING:Q5AAK4 GeneID:3639723
KEGG:cal:CaO19.7485 Uniprot:Q5AAK4
Length = 293
Score = 197 (74.4 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 41/98 (41%), Positives = 57/98 (58%)
Query: 196 LFKNSGVPPKKKLCRFIITP------DAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQG 249
+F+ + V PK+K+ F I ++P GT LTA +F + +DV+G+T +GF G
Sbjct: 132 IFETAKVSPKQKIGEFKIRSIDNDIESKLIPVGTELTADYFSVGQKVDVKGVTKGKGFAG 191
Query: 250 VMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
VMKRWGF G ATHG +K+HR G RV+PG
Sbjct: 192 VMKRWGFSGGRATHGTSKAHRTPGATGGNQNPGRVFPG 229
>ASPGD|ASPL0000071039 [details] [associations]
symbol:AN4308 species:162425 "Emericella nidulans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 GO:GO:0005739
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:BN001303
InterPro:IPR009000 SUPFAM:SSF50447 EMBL:AACD01000075 eggNOG:COG0087
HOGENOM:HOG000100368 InterPro:IPR019926 PANTHER:PTHR11229
TIGRFAMs:TIGR03625 PROSITE:PS00474 HAMAP:MF_01325_B OMA:THRAHGS
OrthoDB:EOG4KM2CG RefSeq:XP_661912.1 ProteinModelPortal:Q5B572
STRING:Q5B572 EnsemblFungi:CADANIAT00006157 GeneID:2872107
KEGG:ani:AN4308.2 Uniprot:Q5B572
Length = 296
Score = 188 (71.2 bits), Expect = 4.5e-13, P = 4.5e-13
Identities = 44/111 (39%), Positives = 59/111 (53%)
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITP-DAMLPPGTPLTAAHFRPREFLD 237
+GA P+ TK G F GV PK+ + F + D +LP G + A F +++D
Sbjct: 122 MGAGWKHPNNVTKSLLGHFSEQGVSPKRHVYEFRVKDEDGLLPVGQLVNADWFHEGQYVD 181
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRR-GGCIASGAGKARVYPG 287
R T +GF GVMKR GF G +HGV+ +HR G S G +RVYPG
Sbjct: 182 ARSNTKGKGFAGVMKRHGFGGQDRSHGVSLTHRSLGSAGPSQGGGSRVYPG 232
>UNIPROTKB|E9PF06 [details] [associations]
symbol:MRPL3 "39S ribosomal protein L3, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR019927
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 PANTHER:PTHR11229 HGNC:HGNC:10379 EMBL:AC107027
IPI:IPI00963941 ProteinModelPortal:E9PF06 Ensembl:ENST00000512877
ArrayExpress:E9PF06 Bgee:E9PF06 Uniprot:E9PF06
Length = 176
Score = 115 (45.5 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 197 FKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
++ G+PPK+ + F IT +A + PGTPL AAHFRP +++DV
Sbjct: 132 YRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDV 173
Score = 106 (42.4 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 33/98 (33%), Positives = 52/98 (53%)
Query: 67 ENLTRNNKAFIEEVVHDQCGAPAVKSGIETYNTPLKIEP--LQPLEITTSSKRTGLIGKI 124
E+L+ N FI+++V D+ K+ + + PLK EP + P E S R GLI
Sbjct: 51 EHLSEENVPFIKQLVSDED-----KAQLASKLCPLKDEPWPIHPWE--PGSFRVGLIALK 103
Query: 125 IGQYPLWMKNGEKCRTTLVQVVDNHIIKY----IPPEE 158
+G PLW K+G+K TL+Q + + Y +PP++
Sbjct: 104 LGMMPLWTKDGQKHVVTLLQKATSILEFYRELGLPPKQ 141
>TIGR_CMR|NSE_0266 [details] [associations]
symbol:NSE_0266 "ribosomal protein L3" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 EMBL:CP000237
GenomeReviews:CP000237_GR InterPro:IPR009000 SUPFAM:SSF50447
eggNOG:COG0087 HOGENOM:HOG000100368 KO:K02906 InterPro:IPR019926
PANTHER:PTHR11229 TIGRFAMs:TIGR03625 PROSITE:PS00474
ProtClustDB:PRK00001 RefSeq:YP_506157.1 ProteinModelPortal:Q2GED9
STRING:Q2GED9 GeneID:3931338 KEGG:nse:NSE_0266 PATRIC:22680623
OMA:CKLYESR BioCyc:NSEN222891:GHFU-293-MONOMER Uniprot:Q2GED9
Length = 210
Score = 168 (64.2 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 34/90 (37%), Positives = 50/90 (55%)
Query: 198 KNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFK 257
K G+ ++ F ++P M P LT HFRP +++D G ++ +GF GVMKR F
Sbjct: 66 KKLGLEKGGRVVEFRVSPRFMPEPLGSLTVEHFRPGQYVDAVGTSIGKGFAGVMKRHNFA 125
Query: 258 GMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G+ A+HGV+ SHR GG +V+ G
Sbjct: 126 GLRASHGVSISHRSGGSTGQCQDPGKVFKG 155
>TIGR_CMR|DET_0474 [details] [associations]
symbol:DET_0474 "ribosomal protein L3" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0019843 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
HOGENOM:HOG000100368 KO:K02906 OMA:KGMRMAG InterPro:IPR019926
PANTHER:PTHR11229 TIGRFAMs:TIGR03625 PROSITE:PS00474
ProtClustDB:PRK00001 HAMAP:MF_01325_B RefSeq:YP_181218.1
ProteinModelPortal:Q3Z981 STRING:Q3Z981 GeneID:3230155
KEGG:det:DET0474 PATRIC:21608017 BioCyc:DETH243164:GJNF-474-MONOMER
Uniprot:Q3Z981
Length = 205
Score = 147 (56.8 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 207 KLCRFIITPD-AMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGV 265
K+ R + D A + G +T + F+ E +D G++ RGF GV+KRW F G P THG
Sbjct: 74 KVLREVDVDDIAAVNVGDQITVSDFKDGEKIDASGVSRGRGFAGVVKRWHFAGGPKTHGQ 133
Query: 266 TKSHRRGGCIASGAGKARVYPG 287
+ HR G I+S R+Y G
Sbjct: 134 SDRHRAPGSISSTTTPGRIYKG 155
Score = 48 (22.0 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQ 144
G+IGK IG ++ ++G+ TLV+
Sbjct: 4 GIIGKKIGMTQIFQEDGKAQPVTLVE 29
>TIGR_CMR|APH_0280 [details] [associations]
symbol:APH_0280 "ribosomal protein L3" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0019843 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
HOGENOM:HOG000100368 KO:K02906 InterPro:IPR019926 PANTHER:PTHR11229
TIGRFAMs:TIGR03625 PROSITE:PS00474 ProtClustDB:PRK00001 OMA:CKLYESR
RefSeq:YP_504892.1 ProteinModelPortal:Q2GL59 STRING:Q2GL59
GeneID:3930343 KEGG:aph:APH_0280 PATRIC:20949134
BioCyc:APHA212042:GHPM-310-MONOMER Uniprot:Q2GL59
Length = 220
Score = 159 (61.0 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 34/87 (39%), Positives = 47/87 (54%)
Query: 201 GVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMP 260
G+ KL + L PG+ + +HF +F+DV G T+ RGF GVMKR F+G+
Sbjct: 68 GIEEDYKLFESRVKAVGDLQPGSKVEVSHFFKGQFVDVTGYTIGRGFAGVMKRHNFRGLR 127
Query: 261 ATHGVTKSHRRGGCIASGAGKARVYPG 287
A+HGV+ SHR G RV+ G
Sbjct: 128 ASHGVSISHRSQGSTGQCQDPGRVFKG 154
>UNIPROTKB|P60442 [details] [associations]
symbol:rplC "50S ribosomal protein L3" species:1773
"Mycobacterium tuberculosis" [GO:0005829 "cytosol" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0040007 "growth"
evidence=IMP] InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
GO:GO:0005829 GO:GO:0005886 GO:GO:0040007 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0006412
GO:GO:0005840 EMBL:BX842574 GO:GO:0003735 GO:GO:0019843
InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
HOGENOM:HOG000100368 KO:K02906 OMA:KGMRMAG InterPro:IPR019926
PANTHER:PTHR11229 TIGRFAMs:TIGR03625 PROSITE:PS00474
ProtClustDB:PRK00001 HAMAP:MF_01325_B PIR:H70641 RefSeq:NP_215215.1
RefSeq:NP_335145.1 RefSeq:YP_006514045.1 ProteinModelPortal:P60442
SMR:P60442 PRIDE:P60442 EnsemblBacteria:EBMYCT00000002326
EnsemblBacteria:EBMYCT00000070012 GeneID:13318590 GeneID:888343
GeneID:926018 KEGG:mtc:MT0728 KEGG:mtu:Rv0701 KEGG:mtv:RVBD_0701
PATRIC:18123333 TubercuList:Rv0701 Uniprot:P60442
Length = 217
Score = 157 (60.3 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 53/174 (30%), Positives = 76/174 (43%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R G++G +G ++ ++ T+V+ N + + PE R Y
Sbjct: 3 RKGILGTKLGMTQVFDESNRVVPVTVVKAGPNVVTRIRTPE-----RDGYSAVQ------ 51
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITP-DAMLP--PGTPLTAAHFRPR 233
L G S P K G + +GV P++ L + DA G LTA F
Sbjct: 52 LAYGEIS--PRKVNKPLTGQYTAAGVNPRRYLAELRLDDSDAATEYQVGQELTAEIFADG 109
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
++DV G + +GF G MKR GF+G A+HG HRR G I A ARV+ G
Sbjct: 110 SYVDVTGTSKGKGFAGTMKRHGFRGQGASHGAQAVHRRPGSIGGCATPARVFKG 163
>TIGR_CMR|CPS_0873 [details] [associations]
symbol:CPS_0873 "ribosomal protein L3" species:167879
"Colwellia psychrerythraea 34H" [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
GO:GO:0006412 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 GO:GO:0019843 InterPro:IPR009000 SUPFAM:SSF50447
eggNOG:COG0087 HOGENOM:HOG000100368 KO:K02906 OMA:KGMRMAG
InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 HAMAP:MF_01325_B RefSeq:YP_267622.1
ProteinModelPortal:Q487Z3 SMR:Q487Z3 STRING:Q487Z3 GeneID:3518812
KEGG:cps:CPS_0873 PATRIC:21465039
BioCyc:CPSY167879:GI48-959-MONOMER Uniprot:Q487Z3
Length = 212
Score = 153 (58.9 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 47/173 (27%), Positives = 80/173 (46%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
GL+G+ +G ++ ++G T+++V N + +K + + + + G KRK
Sbjct: 4 GLVGRKVGMTRVFTEDGVSTPVTVIEVEANRVAQVKTVDNDGYSALQVT-TG--KRKA-- 58
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPD--AMLPPGTPLTAAHFRPRE 234
S TK G F +G+ + L F + + + + G+ +T F +
Sbjct: 59 ----------SRVTKPAAGHFAKAGIEAGRGLWEFRLNENEGSDIEAGSEITVEVFNDTK 108
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DV G + +GFQG +KRW F ATHGV+ SHR G + RV+ G
Sbjct: 109 LVDVTGTSKGKGFQGGIKRWNFTMQHATHGVSLSHRSNGSLGQCQTPGRVFKG 161
>UNIPROTKB|Q9KNY4 [details] [associations]
symbol:rplC "50S ribosomal protein L3" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000597 InterPro:IPR019927
Pfam:PF00297 GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0087 KO:K02906 OMA:KGMRMAG
InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 ProtClustDB:PRK00001 HAMAP:MF_01325_B PIR:F82059
RefSeq:NP_232224.1 ProteinModelPortal:Q9KNY4 SMR:Q9KNY4
PRIDE:Q9KNY4 DNASU:2615613 GeneID:2615613 KEGG:vch:VC2596
PATRIC:20084218 Uniprot:Q9KNY4
Length = 209
Score = 150 (57.9 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 47/171 (27%), Positives = 74/171 (43%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
GLIG+ +G ++ ++G T+V+V N + +K + + +
Sbjct: 3 GLIGRKVGMTRVFTEDGVSIPVTVVEVEANRVSQVKTLETDGY---------------AA 47
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ V S + TK G F +GV + L F + G+ LT F + +
Sbjct: 48 IQVTTGSKKANRVTKPEAGHFAKAGVEAGRGLWEFRLENGEEFAVGSELTVELFNEVKKV 107
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G + +GFQG +KRW F+ THG + SHR G I RV+ G
Sbjct: 108 DVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKG 158
>TIGR_CMR|VC_2596 [details] [associations]
symbol:VC_2596 "ribosomal protein L3" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
KO:K02906 OMA:KGMRMAG InterPro:IPR019926 PANTHER:PTHR11229
TIGRFAMs:TIGR03625 PROSITE:PS00474 ProtClustDB:PRK00001
HAMAP:MF_01325_B PIR:F82059 RefSeq:NP_232224.1
ProteinModelPortal:Q9KNY4 SMR:Q9KNY4 PRIDE:Q9KNY4 DNASU:2615613
GeneID:2615613 KEGG:vch:VC2596 PATRIC:20084218 Uniprot:Q9KNY4
Length = 209
Score = 150 (57.9 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 47/171 (27%), Positives = 74/171 (43%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
GLIG+ +G ++ ++G T+V+V N + +K + + +
Sbjct: 3 GLIGRKVGMTRVFTEDGVSIPVTVVEVEANRVSQVKTLETDGY---------------AA 47
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ V S + TK G F +GV + L F + G+ LT F + +
Sbjct: 48 IQVTTGSKKANRVTKPEAGHFAKAGVEAGRGLWEFRLENGEEFAVGSELTVELFNEVKKV 107
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G + +GFQG +KRW F+ THG + SHR G I RV+ G
Sbjct: 108 DVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKG 158
>UNIPROTKB|P60438 [details] [associations]
symbol:rplC "50S ribosomal subunit protein L3"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006412 EMBL:U18997 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
InterPro:IPR009000 SUPFAM:SSF50447 PDB:2VHM PDBsum:2VHM PDB:2RDO
PDBsum:2RDO EMBL:V00344 eggNOG:COG0087 HOGENOM:HOG000100368
KO:K02906 OMA:KGMRMAG InterPro:IPR019926 PANTHER:PTHR11229
TIGRFAMs:TIGR03625 PROSITE:PS00474 PDB:3J0T PDB:3J0W PDB:3J0Y
PDB:3J11 PDB:3J12 PDB:3J14 PDB:3SGF PDB:3UOS PDBsum:3J0T
PDBsum:3J0W PDBsum:3J0Y PDBsum:3J11 PDBsum:3J12 PDBsum:3J14
PDBsum:3SGF PDBsum:3UOS PDB:1P85 PDB:1P86 PDB:1VS6 PDB:1VS8
PDB:1VT2 PDB:2AW4 PDB:2AWB PDB:2GYA PDB:2GYC PDB:2I2T PDB:2I2V
PDB:2J28 PDB:2QAM PDB:2QAO PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG
PDB:2QBI PDB:2QBK PDB:2QOV PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2VHN
PDB:2WWQ PDB:2Z4L PDB:2Z4N PDB:3DF2 PDB:3DF4 PDB:3E1B PDB:3E1D
PDB:3FIK PDB:3I1N PDB:3I1P PDB:3I1R PDB:3I1T PDB:3I20 PDB:3I22
PDB:3IZT PDB:3IZU PDB:3J01 PDB:3J19 PDB:3KCR PDB:3OAS PDB:3OAT
PDB:3OFC PDB:3OFD PDB:3OFQ PDB:3OFR PDB:3OFZ PDB:3OG0 PDB:3ORB
PDB:3R8S PDB:3R8T PDB:4GAR PDB:4GAU PDBsum:1P85 PDBsum:1P86
PDBsum:1VS6 PDBsum:1VS8 PDBsum:1VT2 PDBsum:2AW4 PDBsum:2AWB
PDBsum:2GYA PDBsum:2GYC PDBsum:2I2T PDBsum:2I2V PDBsum:2J28
PDBsum:2QAM PDBsum:2QAO PDBsum:2QBA PDBsum:2QBC PDBsum:2QBE
PDBsum:2QBG PDBsum:2QBI PDBsum:2QBK PDBsum:2QOV PDBsum:2QOX
PDBsum:2QOZ PDBsum:2QP1 PDBsum:2VHN PDBsum:2WWQ PDBsum:2Z4L
PDBsum:2Z4N PDBsum:3DF2 PDBsum:3DF4 PDBsum:3E1B PDBsum:3E1D
PDBsum:3FIK PDBsum:3I1N PDBsum:3I1P PDBsum:3I1R PDBsum:3I1T
PDBsum:3I20 PDBsum:3I22 PDBsum:3IZT PDBsum:3IZU PDBsum:3J01
PDBsum:3J19 PDBsum:3KCR PDBsum:3OAS PDBsum:3OAT PDBsum:3OFC
PDBsum:3OFD PDBsum:3OFQ PDBsum:3OFR PDBsum:3OFZ PDBsum:3OG0
PDBsum:3ORB PDBsum:3R8S PDBsum:3R8T PDBsum:4GAR PDBsum:4GAU
PDB:3BBX PDBsum:3BBX EMBL:X02613 ProtClustDB:PRK00001
HAMAP:MF_01325_B PIR:A02757 RefSeq:NP_417779.1 RefSeq:YP_492112.1
ProteinModelPortal:P60438 SMR:P60438 IntAct:P60438
MINT:MINT-1302843 PaxDb:P60438 PRIDE:P60438
EnsemblBacteria:EBESCT00000001875 EnsemblBacteria:EBESCT00000014527
GeneID:12932298 GeneID:947817 KEGG:ecj:Y75_p3856 KEGG:eco:b3320
PATRIC:32122072 EchoBASE:EB0859 EcoGene:EG10866
BioCyc:EcoCyc:EG10866-MONOMER BioCyc:ECOL316407:JW3282-MONOMER
EvolutionaryTrace:P60438 Genevestigator:P60438 Uniprot:P60438
Length = 209
Score = 148 (57.2 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 44/169 (26%), Positives = 74/169 (43%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+GK +G ++ ++G T+++V N + + K + R + +
Sbjct: 3 GLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQV----------KDLANDGYRAIQ-VT 51
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
GA+ + TK G F +GV + L F + G ++ F + +DV
Sbjct: 52 TGAKKANR--VTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDV 109
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +GF G +KRW F+ ATHG + SHR G I +V+ G
Sbjct: 110 TGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKG 158
>TIGR_CMR|GSU_2857 [details] [associations]
symbol:GSU_2857 "ribosomal protein L3" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000597
InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735 GO:GO:0019843
InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
HOGENOM:HOG000100368 KO:K02906 OMA:KGMRMAG InterPro:IPR019926
PANTHER:PTHR11229 TIGRFAMs:TIGR03625 PROSITE:PS00474
ProtClustDB:PRK00001 HAMAP:MF_01325_B RefSeq:NP_953900.1
ProteinModelPortal:P60454 SMR:P60454 GeneID:2686777
KEGG:gsu:GSU2857 PATRIC:22028561
BioCyc:GSUL243231:GH27-2831-MONOMER Uniprot:P60454
Length = 210
Score = 147 (56.8 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 47/169 (27%), Positives = 80/169 (47%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
+ GLI K +G ++ ++G++ T+VQ +++ +K +
Sbjct: 2 KKGLIAKKLGMTQIFAEDGKRIPVTVVQAGPCVVLQ----------KKTSATDG---YDA 48
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
+ VG S + TK G K +G + F + G ++A F E++
Sbjct: 49 IQVGFLSQEARKVTKPMLGHIKAAGQGAFAHIREFRLDDVDRYNVGDVISADAFEVGEYI 108
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
DV G ++ +GFQGV+KRWGF+G ++HG + HR G I S A +RV+
Sbjct: 109 DVTGTSIGKGFQGVIKRWGFRGGRSSHG-SCFHRAPGSIGSSAYPSRVF 156
>TIGR_CMR|ECH_0409 [details] [associations]
symbol:ECH_0409 "ribosomal protein L3" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
HOGENOM:HOG000100368 KO:K02906 InterPro:IPR019926 PANTHER:PTHR11229
TIGRFAMs:TIGR03625 PROSITE:PS00474 ProtClustDB:PRK00001 OMA:CKLYESR
RefSeq:YP_507227.1 ProteinModelPortal:Q2GH56 STRING:Q2GH56
GeneID:3927562 KEGG:ech:ECH_0409 PATRIC:20576295
BioCyc:ECHA205920:GJNR-410-MONOMER Uniprot:Q2GH56
Length = 231
Score = 148 (57.2 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 46/173 (26%), Positives = 80/173 (46%)
Query: 115 SKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKL 174
+KR GL + +G ++ G++ TL+ + D+ II K G
Sbjct: 2 AKRIGLFLEKVGHTAIFDNEGKRIPITLLHLRDSFIIS--------KKTKDIHG-----Y 48
Query: 175 GCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPRE 234
+++G E+ +L K + + S + K K+ + + G ++ HF +
Sbjct: 49 DAVVLGVEASI-NL-KKPQSKILEKSKITAKCKIFESRVDNLGDVVEGAKVSITHFVKDQ 106
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
++D+ G ++ +GF GVMKR FKG+ A+HGV+ +HR G RVY G
Sbjct: 107 YVDITGYSLGKGFAGVMKRHNFKGLKASHGVSIAHRSQGSTGQCQDPGRVYKG 159
>TIGR_CMR|SO_0231 [details] [associations]
symbol:SO_0231 "ribosomal protein L3" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412
GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003735
GO:GO:0019843 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
HOGENOM:HOG000100368 KO:K02906 OMA:KGMRMAG InterPro:IPR019926
PANTHER:PTHR11229 TIGRFAMs:TIGR03625 PROSITE:PS00474
ProtClustDB:PRK00001 HAMAP:MF_01325_B RefSeq:NP_715871.1
ProteinModelPortal:Q8EK68 SMR:Q8EK68 GeneID:1168114
KEGG:son:SO_0231 PATRIC:23520155 Uniprot:Q8EK68
Length = 212
Score = 139 (54.0 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 48/171 (28%), Positives = 70/171 (40%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GLIG+ +G ++ ++G T+++V N + + E YR L
Sbjct: 4 GLIGRKVGMTRIFTEDGVSIPVTVIEVAGNRVTQVKTLET-----DGYRA--------LQ 50
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKL--CRFIITPDAMLPPGTPLTAAHFRPREFL 236
V + + TK G F SGV + L R + G L F +
Sbjct: 51 VTTGTKKANRITKPEAGHFAKSGVEAGRGLWELRLADGEGEGIEVGAELNVGIFADVAKV 110
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV G + +GFQG +KRW F+ THG + SHR G I RV+ G
Sbjct: 111 DVTGQSKGKGFQGGVKRWNFRTQDMTHGNSLSHRSNGSIGQNQTPGRVFKG 161
>TAIR|locus:2053713 [details] [associations]
symbol:AT2G43030 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005840 "ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0010207 "photosystem II assembly" evidence=RCA] [GO:0015995
"chlorophyll biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000597
InterPro:IPR019927 Pfam:PF00297 GO:GO:0009570 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0016020 GO:GO:0006412 GO:GO:0009941
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 InterPro:IPR009000
SUPFAM:SSF50447 EMBL:AC006224 EMBL:AY085287 IPI:IPI00516913
PIR:B84861 RefSeq:NP_181831.1 UniGene:At.28215
ProteinModelPortal:Q9SKX4 SMR:Q9SKX4 STRING:Q9SKX4 PaxDb:Q9SKX4
PRIDE:Q9SKX4 ProMEX:Q9SKX4 EnsemblPlants:AT2G43030.1 GeneID:818905
KEGG:ath:AT2G43030 GeneFarm:64 TAIR:At2g43030 eggNOG:COG0087
HOGENOM:HOG000100368 InParanoid:Q9SKX4 KO:K02906 OMA:KGMRMAG
PhylomeDB:Q9SKX4 ProtClustDB:CLSN2683053 Genevestigator:Q9SKX4
GermOnline:AT2G43030 InterPro:IPR019926 PANTHER:PTHR11229
TIGRFAMs:TIGR03625 PROSITE:PS00474 Uniprot:Q9SKX4
Length = 271
Score = 142 (55.0 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 37/99 (37%), Positives = 49/99 (49%)
Query: 190 TKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAH-FRPREFLDVRGLTVDRGFQ 248
TK G + +G P + L F +T P L F+ + +DV G T+ +GFQ
Sbjct: 116 TKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGDLVDVAGTTIGKGFQ 175
Query: 249 GVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G +KR FK THG +KSHR G I +G RVY G
Sbjct: 176 GGIKRHHFKRGQMTHG-SKSHRALGSIGAGTTPGRVYKG 213
>TIGR_CMR|CBU_0238 [details] [associations]
symbol:CBU_0238 "ribosomal protein L3" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412
GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
GO:GO:0019843 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
HOGENOM:HOG000100368 KO:K02906 OMA:KGMRMAG InterPro:IPR019926
PANTHER:PTHR11229 TIGRFAMs:TIGR03625 PROSITE:PS00474
ProtClustDB:PRK00001 HAMAP:MF_01325_B RefSeq:NP_819282.1
ProteinModelPortal:Q83ES4 SMR:Q83ES4 GeneID:1208119
KEGG:cbu:CBU_0238 PATRIC:17929169
BioCyc:CBUR227377:GJ7S-244-MONOMER Uniprot:Q83ES4
Length = 217
Score = 136 (52.9 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 47/173 (27%), Positives = 75/173 (43%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI--IKYIPPEEFKPNRKPYRGEPKRKLGC 176
GLIG+ G ++ + G T+V+V+ N I +K + + ++ + Y
Sbjct: 4 GLIGRKCGMTRIFTETGSSIPVTVVEVILNRITQVKTVETDGYRAFQVAY---------- 53
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPP--GTPLTAAHFRPRE 234
G +S + K G + + V L F + + + G L F+ +
Sbjct: 54 ---GKKSS--ARVNKPLAGHYSKAAVEAGNALREFRLGNEELTEAKAGDELKVDIFKEGQ 108
Query: 235 FLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
+DVRGLT +GF G +KR F+ ATHG + SHR G I RV+ G
Sbjct: 109 VVDVRGLTRGKGFAGTVKRHNFRTQDATHGNSLSHRAPGSIGQCQTPGRVWKG 161
>GENEDB_PFALCIPARUM|PFL2180w [details] [associations]
symbol:PFL2180w "50S ribosomal protein L3,
putative" species:5833 "Plasmodium falciparum" [GO:0005762
"mitochondrial large ribosomal subunit" evidence=ISS]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412
GO:GO:0005762 GO:GO:0003735 EMBL:AE014188 InterPro:IPR009000
SUPFAM:SSF50447 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
RefSeq:XP_001350840.1 ProteinModelPortal:Q8I4X7
EnsemblProtists:PFL2180w:mRNA GeneID:811488 KEGG:pfa:PFL2180w
EuPathDB:PlasmoDB:PF3D7_1245400 HOGENOM:HOG000283540
ProtClustDB:CLSZ2434839 Uniprot:Q8I4X7
Length = 341
Score = 137 (53.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 45/166 (27%), Positives = 75/166 (45%)
Query: 114 SSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRK 173
+S+R+GL+G +G +W G K T+V++ + ++I N+K K
Sbjct: 77 NSRRSGLLGYKVGCMSIWDVWGVKHAVTVVKIDNCYVI----------NQKTIS---KNG 123
Query: 174 LGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPR 233
L +G + + +K G F + K+ F T D LP + HF P
Sbjct: 124 YEALELGVGNMNVIKQSKNNIGNFIKRKLGFIHKIKEFKCTSDCFLPIHHKFSCRHFSPG 183
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPATHGV-TKSHRRGGCIASG 278
+ L + ++GF G MK+W F G +HG +K+HR G ++ G
Sbjct: 184 QNLFISSGIKNKGFCGAMKKWNFSGKNKSHGTESKAHRSLGSVSMG 229
>UNIPROTKB|Q8I4X7 [details] [associations]
symbol:PFL2180w "Mitochondrial ribosomal protein L3,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005762
"mitochondrial large ribosomal subunit" evidence=ISS]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412
GO:GO:0005762 GO:GO:0003735 EMBL:AE014188 InterPro:IPR009000
SUPFAM:SSF50447 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
RefSeq:XP_001350840.1 ProteinModelPortal:Q8I4X7
EnsemblProtists:PFL2180w:mRNA GeneID:811488 KEGG:pfa:PFL2180w
EuPathDB:PlasmoDB:PF3D7_1245400 HOGENOM:HOG000283540
ProtClustDB:CLSZ2434839 Uniprot:Q8I4X7
Length = 341
Score = 137 (53.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 45/166 (27%), Positives = 75/166 (45%)
Query: 114 SSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRK 173
+S+R+GL+G +G +W G K T+V++ + ++I N+K K
Sbjct: 77 NSRRSGLLGYKVGCMSIWDVWGVKHAVTVVKIDNCYVI----------NQKTIS---KNG 123
Query: 174 LGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPR 233
L +G + + +K G F + K+ F T D LP + HF P
Sbjct: 124 YEALELGVGNMNVIKQSKNNIGNFIKRKLGFIHKIKEFKCTSDCFLPIHHKFSCRHFSPG 183
Query: 234 EFLDVRGLTVDRGFQGVMKRWGFKGMPATHGV-TKSHRRGGCIASG 278
+ L + ++GF G MK+W F G +HG +K+HR G ++ G
Sbjct: 184 QNLFISSGIKNKGFCGAMKKWNFSGKNKSHGTESKAHRSLGSVSMG 229
>TIGR_CMR|BA_0110 [details] [associations]
symbol:BA_0110 "ribosomal protein L3" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0087 HOGENOM:HOG000100368 KO:K02906
OMA:KGMRMAG InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 RefSeq:NP_842678.1 RefSeq:YP_016715.1
RefSeq:YP_026396.1 ProteinModelPortal:Q81VT0 SMR:Q81VT0
PRIDE:Q81VT0 DNASU:1087637 EnsemblBacteria:EBBACT00000011145
EnsemblBacteria:EBBACT00000018294 EnsemblBacteria:EBBACT00000021192
GeneID:1087637 GeneID:2818190 GeneID:2852418 KEGG:ban:BA_0110
KEGG:bar:GBAA_0110 KEGG:bat:BAS0110 ProtClustDB:PRK00001
BioCyc:BANT260799:GJAJ-121-MONOMER
BioCyc:BANT261594:GJ7F-123-MONOMER HAMAP:MF_01325_B Uniprot:Q81VT0
Length = 210
Score = 117 (46.2 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 50/170 (29%), Positives = 75/170 (44%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
G++G+ IG ++ +NGE T++ N +++ E N E KR+ L
Sbjct: 4 GILGRKIGMTQVFAENGELIPVTVIAANPNVVLQKKTTETDGYNAIQLGFEDKREK--LT 61
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAM-LPPGTPLTAAHFRPREFLD 237
E G + K S P K+ R I D L G + F E +D
Sbjct: 62 NKPEQGHTA----------KASTTP--KRFIREIRDADVDGLEVGQEVKVDVFATGEIVD 109
Query: 238 VRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
V G++ +GFQGV+KR G P +HG ++ HRR G + A RV+ G
Sbjct: 110 VTGISKGKGFQGVIKRHGQSRGPMSHG-SRYHRRPGSMGPVAPN-RVFKG 157
>TIGR_CMR|CHY_2309 [details] [associations]
symbol:CHY_2309 "ribosomal protein L3" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 InterPro:IPR009000 SUPFAM:SSF50447
eggNOG:COG0087 HOGENOM:HOG000100368 KO:K02906 OMA:KGMRMAG
InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 ProtClustDB:PRK00001 HAMAP:MF_01325_B
RefSeq:YP_361118.1 ProteinModelPortal:Q3A9R6 SMR:Q3A9R6
STRING:Q3A9R6 PRIDE:Q3A9R6 GeneID:3727674 KEGG:chy:CHY_2309
PATRIC:21277689 BioCyc:CHYD246194:GJCN-2308-MONOMER Uniprot:Q3A9R6
Length = 209
Score = 111 (44.1 bits), Expect = 0.00032, P = 0.00032
Identities = 33/101 (32%), Positives = 46/101 (45%)
Query: 187 SLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRG 246
S K G F + V P + L + G + F E +DV G++ +G
Sbjct: 59 SKVNKPLKGHFNRANVKPMRYLREIRVENIDAYEVGQEIKVDIFTVGEKVDVTGISKGKG 118
Query: 247 FQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
F G +KR GF P HG +K HRR G + + G ARV+ G
Sbjct: 119 FAGGIKRHGFHRGPMAHG-SKYHRRPGSLGA-KGPARVFLG 157
>TIGR_CMR|CJE_1875 [details] [associations]
symbol:CJE_1875 "ribosomal protein L3" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
GO:GO:0006412 GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
HOGENOM:HOG000100368 KO:K02906 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
ProtClustDB:PRK00001 RefSeq:YP_179845.1 ProteinModelPortal:Q5HS90
STRING:Q5HS90 GeneID:3232518 KEGG:cjr:CJE1875 PATRIC:20045582
OMA:SIGNCEW BioCyc:CJEJ195099:GJC0-1914-MONOMER Uniprot:Q5HS90
Length = 191
Score = 109 (43.4 bits), Expect = 0.00040, P = 0.00040
Identities = 29/65 (44%), Positives = 35/65 (53%)
Query: 223 TPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKA 282
TPL A + L V T RG+ GVMKR F G PA+HG ++ HRR G I +
Sbjct: 85 TPLNEA-----KILKVSFNTKGRGYSGVMKRHNFAGGPASHG-SRFHRRHGSIGNREWPG 138
Query: 283 RVYPG 287
RV PG
Sbjct: 139 RVQPG 143
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.140 0.442 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 296 296 0.00093 115 3 11 22 0.38 34
33 0.44 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 41
No. of states in DFA: 611 (65 KB)
Total size of DFA: 225 KB (2123 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.85u 0.07s 24.92t Elapsed: 00:00:14
Total cpu time: 24.86u 0.07s 24.93t Elapsed: 00:00:14
Start: Thu Aug 15 13:49:52 2013 End: Thu Aug 15 13:50:06 2013