RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy451
(296 letters)
>2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial
ribosome, large ribosomal subunit, ribosomal R ribosome;
12.10A {Bos taurus}
Length = 211
Score = 169 bits (431), Expect = 2e-52
Identities = 76/171 (44%), Positives = 101/171 (59%), Gaps = 12/171 (7%)
Query: 117 RTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGC 176
R GLI +G PLW K+G+K TL+QV D H++KY E K+
Sbjct: 1 RVGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCN-----G------KMAT 49
Query: 177 LLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFL 236
L VG ++ ++ G+PPK+ + F IT +A + PGTPL AAHFRP +++
Sbjct: 50 LSVGGKTVSRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYV 109
Query: 237 DVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
DV T+ +GFQGVMKRWGFKG PATHG TK+HRR G +A+G RV+PG
Sbjct: 110 DVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATGDI-GRVWPG 159
>3r8s_D 50S ribosomal protein L3; protein biosynthesis, RNA, tRNA, transfer
RNA, 23S ribosomal subunit, ribosome recycling factor,
RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_B
1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D
2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D
2qbg_D 2qbi_D* 2qbk_D* 2qov_D ...
Length = 209
Score = 128 bits (325), Expect = 1e-36
Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 13/169 (7%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
GL+GK +G ++ ++G T+++V N + + YR +
Sbjct: 3 GLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLA-----NDGYRA--------IQ 49
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
V + + TK G F +GV + L F + G ++ F + +DV
Sbjct: 50 VTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDV 109
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +GF G +KRW F+ ATHG + SHR G I +V+ G
Sbjct: 110 TGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKG 158
>3bbo_F Ribosomal protein L3; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 259
Score = 122 bits (308), Expect = 1e-33
Identities = 49/208 (23%), Positives = 80/208 (38%), Gaps = 15/208 (7%)
Query: 81 VHDQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRT 140
+ ++T + P + + + G++ +G + ++G
Sbjct: 8 LRSPFLHRLPLRALKT-HKPTSLHISKSSISASLEAGVGVMATKLGMMSFFEESGTVVPV 66
Query: 141 TLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNS 200
T+V + +I+ I E Y + VG TK G + S
Sbjct: 67 TVVGFREGNIVTQIKTEA----TDGYNA--------VQVGYRRVRDRKLTKPEMGHLEKS 114
Query: 201 GVPPKKKLCRFIITPDAMLPPGTPLTAA-HFRPREFLDVRGLTVDRGFQGVMKRWGFKGM 259
G+ P + L F + L F+ + +DV G T+ +GFQG +KR FK
Sbjct: 115 GIIPLRHLQEFRLQSIDGFEVTQKLDFGELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRG 174
Query: 260 PATHGVTKSHRRGGCIASGAGKARVYPG 287
THG +KSHR+ G I +G RVY G
Sbjct: 175 QMTHG-SKSHRQLGSIGAGTTPGRVYKG 201
>2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B* 1sm1_B*
1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B 1nkw_B
3cf5_B* 3dll_B* 3pio_B* 3pip_B* 1pnu_B 1pny_B 1vor_E
1vou_E 1vow_E 1voy_E ...
Length = 211
Score = 117 bits (296), Expect = 3e-32
Identities = 50/169 (29%), Positives = 66/169 (39%), Gaps = 18/169 (10%)
Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
G++G IG +W KN T+V I++ + Y +
Sbjct: 3 GILGTKIGMTQIW-KNDRAIPVTVVLAGPCPIVQRKTAQ-----TDGYEA--------VQ 48
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+G K G F +GV P + L F P G + F E +D
Sbjct: 49 IGYAPKAERKVNKPMQGHFAKAGVAPTRILREF----RGFAPDGDSVNVDIFAEGEKIDA 104
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + +G QGVMKRW F G PA+HG K HRR G I RVY G
Sbjct: 105 TGTSKGKGTQGVMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKG 153
>3v2d_E 50S ribosomal protein L3; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E
2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E
2wrj_E 2wrl_E 2wro_E 2wrr_E ...
Length = 206
Score = 111 bits (281), Expect = 4e-30
Identities = 40/109 (36%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
+G +P + G F +GV P + L P G +T F+P E +DV
Sbjct: 49 LGFLPQNPKRVNRPLKGHFAKAGVEPVRILREI----RDFNPEGDTVTVEIFKPGERVDV 104
Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G + RGF GVMKRW F G P +HG K HR G I + RVY G
Sbjct: 105 TGTSKGRGFAGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKG 153
>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B*
1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B*
1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B*
1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ...
Length = 338
Score = 78.5 bits (193), Expect = 7e-17
Identities = 26/141 (18%), Positives = 42/141 (29%), Gaps = 10/141 (7%)
Query: 153 YIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKL---- 208
+P + + + G + K + ++
Sbjct: 115 DVPEDHDPDAAEEQIRDAHEAGDL---GDLRLITHTVPDAVPSVPKKKPDVMETRVGGGS 171
Query: 209 --CRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVT 266
R D + G FR E+ DV G+T +G QG +KRWG + H
Sbjct: 172 VSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQ 231
Query: 267 KSHRRGGCIASGAGKARVYPG 287
RR G + +RV
Sbjct: 232 GWRRRIGNLGPWNP-SRVRST 251
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B
3izc_C 3izs_C 1s1i_C 3jyw_C
Length = 387
Score = 66.8 bits (162), Expect = 9e-13
Identities = 32/212 (15%), Positives = 61/212 (28%), Gaps = 16/212 (7%)
Query: 83 DQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQY---PLWMKNGEKCR 139
D+ G+ K + T + P+ + + + T + + L + +
Sbjct: 61 DRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVE-TPRGLRSLTTVWAEHLSDEVKRRFY 119
Query: 140 TTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYT----KEYCG 195
+ KY +K ++ K +
Sbjct: 120 KNWYKSKKKAFTKYSAKYAQDGAGIERELARIKKYASVVRVLVHTQIRKTPLAQKKAHLA 179
Query: 196 LFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRWG 255
+ +G +K+ T + F E +D +T GF+GV RWG
Sbjct: 180 EIQLNGGSISEKV-----DWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWG 234
Query: 256 FKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
K +P + R+ CI + A V
Sbjct: 235 TKKLPRKTH--RGLRKVACIGAW-HPAHVMWS 263
>2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 403
Score = 64.0 bits (155), Expect = 9e-12
Identities = 33/215 (15%), Positives = 66/215 (30%), Gaps = 20/215 (9%)
Query: 83 DQCGAPAVKSGIETYNTPLKIEPLQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTL 142
D+ G+ K + T ++ P+ + I + T + ++C+
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVE-TPRGLRTFKTI-FAEHISDECKRRF 118
Query: 143 VQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGV 202
+ K K + + +R + + +T+ + +
Sbjct: 119 YKNWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHTQ-----MRLLPL 173
Query: 203 PPKKKLC----------RFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMK 252
KK + + F E +DV G+T +G++GV
Sbjct: 174 RQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTS 233
Query: 253 RWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
RW K +P + R+ CI + ARV
Sbjct: 234 RWHTKKLP--RKTHRGLRKVACIGAW-HPARVAFS 265
>3iz5_C 60S ribosomal protein L3 (L3P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_C
Length = 389
Score = 63.3 bits (153), Expect = 2e-11
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 226 TAAHFRPREFLDVRGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVY 285
A F+ E +D+ G+T +G++GV+ RWG +P + R+ CI + ARV
Sbjct: 208 VEAVFQKDEMVDIIGVTKGKGYEGVVTRWGVTRLPRKTH--RGLRKVACIGAWHP-ARVS 264
Query: 286 PG 287
Sbjct: 265 YT 266
>4a17_B RPL3, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_B 4a1c_B 4a1e_B
Length = 391
Score = 60.2 bits (145), Expect = 2e-10
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Query: 195 GLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGVMKRW 254
V K + L + F E LDV G+T +GF GV+KR+
Sbjct: 174 NHILEIQVNGGKVAEKVAFAKS--LLEKEVKVDSIFAENEMLDVLGVTKGKGFAGVIKRF 231
Query: 255 GFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
G K + + +R+ GCI + +R+
Sbjct: 232 GVKHLQ--KKTHRGYRKVGCIGAWHP-SRIRFT 261
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 4e-07
Identities = 44/333 (13%), Positives = 83/333 (24%), Gaps = 118/333 (35%)
Query: 4 NHNLRLALS----NCNRILSRKSNIFETPFL--FGCSEVINIRQ--------KKVWIRPP 49
+H++ ILS +FE F+ F C +V ++ + + +
Sbjct: 4 HHHMDFETGEHQYQYKDILS----VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 50 ---RVKYPLWFLQKERAE----YIENLTRNNKAFIEEVVHDQCGAPAVKSGI------ET 96
W L ++ E ++E + R N F+ + + P++ + +
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 97 YNTPLKIEPLQPLEITTSSK----RTGL----------------IGK------------I 124
YN + ++ R L GK +
Sbjct: 120 YNDN---QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 125 IGQYP---LWMKNGEKCRTTLV---------QVVDNHIIKYIPPEEFKPNRKPYRGEPKR 172
+ W+ V Q+ N + K + E +R
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 173 KLG------CLLVGAESGDPSL---YTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGT 223
L CLLV L + F S C+ ++T T
Sbjct: 237 LLKSKPYENCLLV--------LLNVQNAKAWNAFNLS--------CKILLT--------T 272
Query: 224 PLTAAHFRPREFLDVRGLTVDRGFQGVMKRWGF 256
R ++ D
Sbjct: 273 -------RFKQVTDFLSAATTTHISLDHHSMTL 298
>1us2_A Xylanase10C, endo-beta-1,4-xylanase; hydrolase, carbohydrate
binding module, xylan degradation; HET: XYP; 1.85A
{Cellvibrio japonicus} SCOP: b.18.1.11 c.1.8.3 PDB:
1us3_A
Length = 530
Score = 29.6 bits (66), Expect = 1.2
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 120 LIGKIIGQYPLWMKNGEKCRTTLVQVVDNHI 150
L+ Q P +MKN + +D HI
Sbjct: 250 LVWHSDYQVPNFMKNWAGSAEDFLAALDTHI 280
>1xyz_A 1,4-beta-D-xylan-xylanohydrolase; glycosyl hydrolase, xylanase,
family F/10 of glycosyl hydrolases, glycosyltransferase;
1.40A {Clostridium thermocellum} SCOP: c.1.8.3
Length = 347
Score = 29.3 bits (66), Expect = 1.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 127 QYPLWMKNGEKCRTTLVQVVDNHI 150
Q P W+ NG R +L+ V+ NHI
Sbjct: 113 QNPSWLTNGNWNRDSLLAVMKNHI 136
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.5
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 9/37 (24%)
Query: 61 ERAEYIENLTRNNKAFIEEVVHDQCGAPA--VKSGIE 95
E+ ++ L + K + ++ APA +K+ +E
Sbjct: 18 EKQA-LKKLQASLKLYADD------SAPALAIKATME 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 2.0
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 40 RQKKVWIRPPRVKYPLWFLQKERAEYIENLTRNN----KAFIEE 79
++ W + W + ++E +E NN KAF ++
Sbjct: 107 VMEQEWREKAKKDLEEWN--QRQSEQVEKNKINNRIADKAFYQQ 148
>3niy_A Endo-1,4-beta-xylanase; TIM-barrel, hydrolase; 1.58A {Thermotoga
petrophila rku-1} PDB: 3nj3_A* 1vbr_A* 1vbu_A
Length = 341
Score = 28.5 bits (64), Expect = 2.4
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 127 QYPLWMKNGEKCRTTLVQVVDNHI 150
Q P W+ E + L+ V+++HI
Sbjct: 108 QLPGWITGREWTKEELLNVLEDHI 131
>3u7b_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA MAN;
1.94A {Fusarium oxysporum}
Length = 327
Score = 28.6 bits (64), Expect = 2.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 127 QYPLWMKNGEKCRTTLVQVVDNHI 150
Q P W+ NG TL V+ +HI
Sbjct: 89 QLPSWVANGNWNNQTLQAVMRDHI 112
>3no8_A BTB/POZ domain-containing protein 2; PHR domain, BTBD1, BTBD2,
PAM-highwire-RPM-1 domain, toposis regulation, protein
structure initiative; 2.20A {Homo sapiens}
Length = 176
Score = 27.7 bits (61), Expect = 3.2
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 231 RPREFLDVRGLTVDRGFQGVMKRWGFKGMPAT 262
RPR L + +++R FQ V RWG+ G
Sbjct: 5 RPRCCLRGKECSINR-FQQVESRWGYSGTSDR 35
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric
acid cycle, heat- like domain, lyase; HET: TRA; 2.40A
{Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Length = 865
Score = 28.2 bits (63), Expect = 3.8
Identities = 34/216 (15%), Positives = 58/216 (26%), Gaps = 34/216 (15%)
Query: 94 IETYNTPLKIEPLQPLEITTSSKRTGLIGKII--GQYPLWMKNGEKCRTTLVQVVDNHII 151
+ Y ++ L T K LI ++ G+ PL + G + +
Sbjct: 309 VYPYKGEVRNHETGELLATFELKTDVLIDEVRAGGRIPLIIGRGLTTKA-------REAL 361
Query: 152 KYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPSLYTKEYCGL--------------- 196
+ F+ + + L +VG G + YC
Sbjct: 362 GLPHSDVFRQAKDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMT 421
Query: 197 ---FKNSGVPPKKKLCRFIITPD-AMLPPGTPLTAAHFRPREFLDVRGLTVDRGFQGV-- 250
K+ + + P H +F+ RG R GV
Sbjct: 422 RDELKDLACLGFSAD-LVMQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLRPGDGVIH 480
Query: 251 --MKRWGFKGMPATHGVTKSHRRGGCIASGAGKARV 284
+ R T G + + G I+ AG V
Sbjct: 481 SWLNRMLLPDTVGTGGDSHTRFPIG-ISFPAGSGLV 515
>3n0a_A Tyrosine-protein phosphatase auxilin; phosphatase-like domain, C2
domain, hydrolase; 2.20A {Bos taurus}
Length = 361
Score = 27.6 bits (60), Expect = 5.1
Identities = 13/106 (12%), Positives = 26/106 (24%), Gaps = 3/106 (2%)
Query: 106 LQPLEITTSSKRTGLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKP 165
L K + + P + K CR V+ Y +F+ ++
Sbjct: 177 LADKPYRPHFKPLTIKSITVSPVPFFNKQRNGCRPY-CDVLIGETKIYTTCADFERMKEY 235
Query: 166 YRGEPKRKLGCLLVGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRF 211
+ K + + GD + + F
Sbjct: 236 RVQDGKIFIPLSIT--VQGDVVVSMYHLRSTIGSRLQAKVTNTQIF 279
>4f8x_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA; 1.47A
{Penicillium canescens}
Length = 335
Score = 27.4 bits (61), Expect = 6.4
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 127 QYPLWMKNGEKCRTTLVQVVDNHI 150
Q ++ + L V+ NHI
Sbjct: 91 QVSDFVTSKTWTAKELTAVMKNHI 114
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.140 0.442
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,703,972
Number of extensions: 284503
Number of successful extensions: 465
Number of sequences better than 10.0: 1
Number of HSP's gapped: 449
Number of HSP's successfully gapped: 25
Length of query: 296
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 203
Effective length of database: 4,105,140
Effective search space: 833343420
Effective search space used: 833343420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)