RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy451
         (296 letters)



>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 205

 Score =  100 bits (250), Expect = 3e-26
 Identities = 47/170 (27%), Positives = 61/170 (35%), Gaps = 18/170 (10%)

Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
           G++G  IG   +W  N      T+V      I++    +            PK       
Sbjct: 3   GILGTKIGMTQIWK-NDRAIPVTVVLAGPCPIVQRKTAQTDGYEAVQIGYAPKA------ 55

Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
                       K   G F  +GV P + L  F             +    F   E +D 
Sbjct: 56  -------ERKVNKPMQGHFAKAGVAPTRILREFRGFAPDG----DSVNVDIFAEGEKIDA 104

Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPGG 288
            G +  +G QGVMKRW F G PA+HG  K HRR G I       RVY G 
Sbjct: 105 TGTSKGKGTQGVMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGK 154


>d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli
           [TaxId: 562]}
          Length = 209

 Score = 98.6 bits (245), Expect = 2e-25
 Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 13/169 (7%)

Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
           GL+GK +G   ++ ++G     T+++V  N + +                        + 
Sbjct: 3   GLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLA-------------NDGYRAIQ 49

Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
           V   +   +  TK   G F  +GV   + L  F +        G  ++   F   + +DV
Sbjct: 50  VTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDV 109

Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
            G +  +GF G +KRW F+   ATHG + SHR  G I       +V+ G
Sbjct: 110 TGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKG 158


>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus
           thermophilus [TaxId: 274]}
          Length = 205

 Score = 88.6 bits (219), Expect = 9e-22
 Identities = 45/169 (26%), Positives = 68/169 (40%), Gaps = 18/169 (10%)

Query: 119 GLIGKIIGQYPLWMKNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLL 178
           G++G  +G   ++  +      T++      +++   PE             K     + 
Sbjct: 3   GILGVKVGMTRIFR-DDRAVPVTVILAGPCPVVQRRTPE-------------KDGYTAVQ 48

Query: 179 VGAESGDPSLYTKEYCGLFKNSGVPPKKKLCRFIITPDAMLPPGTPLTAAHFRPREFLDV 238
           +G    +P    +   G F  +GV P + L                +T   F+P E +DV
Sbjct: 49  LGFLPQNPKRVNRPLKGHFAKAGVEPVRILREIRDFNPEG----DTVTVEIFKPGERVDV 104

Query: 239 RGLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
            G +  RGF GVMKRW F G P +HG  K HR  G I +     RVY G
Sbjct: 105 TGTSKGRGFAGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKG 153


>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 337

 Score = 55.4 bits (133), Expect = 2e-09
 Identities = 35/168 (20%), Positives = 51/168 (30%), Gaps = 15/168 (8%)

Query: 133 KNGEKCRTTLVQVVDNHIIKYIPPEEFKPNRKPYRGEPKRKLGCLLVGAESGDPS-LYTK 191
           +  E        + +         E  +    P   +P      +    E+GD   L   
Sbjct: 85  RAYEDTPYGQRPLTEV-WTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLI 143

Query: 192 EYCGLFKNSGVPPKKKLC------------RFIITPDAMLPPGTPLTAAHFRPREFLDVR 239
            +        VP KK               R     D +   G       FR  E+ DV 
Sbjct: 144 THTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVA 203

Query: 240 GLTVDRGFQGVMKRWGFKGMPATHGVTKSHRRGGCIASGAGKARVYPG 287
           G+T  +G QG +KRWG +     H      RR G +      +RV   
Sbjct: 204 GVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPW-NPSRVRST 250


>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 347

 Score = 26.1 bits (57), Expect = 4.9
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 2   ALNHNLRLALSNCNRILSRKSNIFETPFLFGCSEVINIRQKKVWIR----PPRVKYPLWF 57
           A++ +L  +L      L    + FE  FL   +  +   + +  ++    P  + +    
Sbjct: 154 AVDRSLLRSLLGMLSDLQVYKDSFELKFL-EETNCLYAAEGQRLMQEREVPEYLNHVSKR 212

Query: 58  LQKERAEYIENLTRNNKAFIEEVVHDQC 85
           L++E    I  L  + +  +   V  Q 
Sbjct: 213 LEEEGDRVITYLDHSTQKPLIACVEKQL 240


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.140    0.442 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,169,237
Number of extensions: 57175
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 5
Length of query: 296
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 211
Effective length of database: 1,240,546
Effective search space: 261755206
Effective search space used: 261755206
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)