BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4510
(812 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 121/247 (48%), Gaps = 20/247 (8%)
Query: 256 KGPGIPTP-----PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWT----PREAG 306
K P P P P GH EG+ + W+S G L + + +W P+E
Sbjct: 158 KHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGK 217
Query: 307 AWQVDQKPL-VGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAH 365
VD K + GH+ VED+ W + + S + D + IWDTR NT S L +AH
Sbjct: 218 I--VDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRS-NTTSKPSHLVDAH 274
Query: 366 TSDVNVISWN-RTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTES 424
T++VN +S+N +E ++ +G D + +WDLR K + TF+ H + V W P
Sbjct: 275 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL--KLHTFESHKDEIFQVHWSPHNE 332
Query: 425 STFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLFIHLGQ-KEIKELHWHPQLP 483
+ AS G D ++ +WDL+ + EQ + +D P +LLFIH G +I + W+P P
Sbjct: 333 TILASSGTDRRLNVWDLSKIGE---EQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 389
Query: 484 GTIISTA 490
I S +
Sbjct: 390 WVICSVS 396
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 104/258 (40%), Gaps = 31/258 (12%)
Query: 160 KGPGIPTP-----PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWT----PREAG 210
K P P P P GH EG+ + W+S G L + + +W P+E
Sbjct: 158 KHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGK 217
Query: 211 AWQVDQKPL-GGHTNSAEDLQWSDLKTAL-QTVDDPFQLAEHNKKRGKGPGIPTPPLFSF 268
VD K + GH+ ED+ W L +L +V D +L + + + P
Sbjct: 218 I--VDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRS----NTTSKPSHLV 271
Query: 269 SGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWS 328
H E + ++ +LATG + + +W R ++ H + + + WS
Sbjct: 272 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL---KLKLHTFESHKDEIFQVHWS 328
Query: 329 PGEKRVLASCSVDLSIRIWDTRVINTKSC----------MLTLPNAHTSDVNVISWNRTE 378
P + +LAS D + +WD I + +L + HT+ ++ SWN E
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 379 P-LIVSGGDDGCIHVWDL 395
P +I S +D + +W +
Sbjct: 389 PWVICSVSEDNIMQIWQM 406
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 22/147 (14%)
Query: 646 TPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPR------------EAGAWS 693
+ P H E + ++ +LATG + + +W R + +
Sbjct: 265 SKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQ 324
Query: 694 VYLYTNRFGVLATGDCKRNIHIWTPREAGAWQV-----DQKPLV-----GHTNSVEDLQW 743
V+ + +LA+ R +++W + G Q D P + GHT + D W
Sbjct: 325 VHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSW 384
Query: 744 SPGEKRVLASCSVDRSNRIGARRDMLY 770
+P E V+ S S D +I + +Y
Sbjct: 385 NPNEPWVICSVSEDNIMQIWQMAENIY 411
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 61/159 (38%), Gaps = 38/159 (23%)
Query: 640 KGPGIPTP-----PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWT----PREAG 690
K P P P P GH EG+ + W+S G L + + +W P+E
Sbjct: 158 KHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGK 217
Query: 691 ------------------AWSVYLYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKP-- 730
AW + L+ + FG +A + + IW R KP
Sbjct: 218 IVDAKAIFTGHSAVVEDVAWHL-LHESLFGSVAD---DQKLMIWDTRS----NTTSKPSH 269
Query: 731 -LVGHTNSVEDLQWSPGEKRVLASCSVDRSNRIGARRDM 768
+ HT V L ++P + +LA+ S D++ + R++
Sbjct: 270 LVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 121/247 (48%), Gaps = 20/247 (8%)
Query: 256 KGPGIPTP-----PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWT----PREAG 306
K P P P P GH EG+ + W+S G L + + +W P+E
Sbjct: 158 KHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGK 217
Query: 307 AWQVDQKPL-VGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAH 365
VD K + GH+ VED+ W + + S + D + IWDTR NT S L +AH
Sbjct: 218 I--VDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRS-NTTSKPSHLVDAH 274
Query: 366 TSDVNVISWN-RTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTES 424
T++VN +S+N +E ++ +G D + +WDLR K + TF+ H + V W P
Sbjct: 275 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL--KLHTFESHKDEIFQVHWSPHNE 332
Query: 425 STFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLFIHLGQ-KEIKELHWHPQLP 483
+ AS G D ++ +WDL+ + EQ + +D P +LLFIH G +I + W+P P
Sbjct: 333 TILASSGTDRRLNVWDLSKIGE---EQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 389
Query: 484 GTIISTA 490
I S +
Sbjct: 390 WVICSVS 396
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 102/256 (39%), Gaps = 31/256 (12%)
Query: 160 KGPGIPTP-----PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWT----PREAG 210
K P P P P GH EG+ + W+S G L + + +W P+E
Sbjct: 158 KHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGK 217
Query: 211 AWQVDQKPL-GGHTNSAEDLQWSDLKTAL-QTVDDPFQLAEHNKKRGKGPGIPTPPLFSF 268
VD K + GH+ ED+ W L +L +V D +L + + + P
Sbjct: 218 I--VDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRS----NTTSKPSHLV 271
Query: 269 SGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWS 328
H E + ++ +LATG + + +W R ++ H + + + WS
Sbjct: 272 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL---KLKLHTFESHKDEIFQVHWS 328
Query: 329 PGEKRVLASCSVDLSIRIWDTRVINTKSC----------MLTLPNAHTSDVNVISWNRTE 378
P + +LAS D + +WD I + +L + HT+ ++ SWN E
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 379 P-LIVSGGDDGCIHVW 393
P +I S +D +W
Sbjct: 389 PWVICSVSEDNIXQIW 404
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 22/147 (14%)
Query: 646 TPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPR------------EAGAWS 693
+ P H E + ++ +LATG + + +W R + +
Sbjct: 265 SKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQ 324
Query: 694 VYLYTNRFGVLATGDCKRNIHIWTPREAGAWQV-----DQKPLV-----GHTNSVEDLQW 743
V+ + +LA+ R +++W + G Q D P + GHT + D W
Sbjct: 325 VHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSW 384
Query: 744 SPGEKRVLASCSVDRSNRIGARRDMLY 770
+P E V+ S S D +I + +Y
Sbjct: 385 NPNEPWVICSVSEDNIXQIWQXAENIY 411
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 61/159 (38%), Gaps = 38/159 (23%)
Query: 640 KGPGIPTP-----PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWT----PREAG 690
K P P P P GH EG+ + W+S G L + + +W P+E
Sbjct: 158 KHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGK 217
Query: 691 ------------------AWSVYLYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKP-- 730
AW + L+ + FG +A + + IW R KP
Sbjct: 218 IVDAKAIFTGHSAVVEDVAWHL-LHESLFGSVAD---DQKLXIWDTRS----NTTSKPSH 269
Query: 731 -LVGHTNSVEDLQWSPGEKRVLASCSVDRSNRIGARRDM 768
+ HT V L ++P + +LA+ S D++ + R++
Sbjct: 270 LVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 106/258 (41%), Gaps = 31/258 (12%)
Query: 160 KGPGIPTP-----PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW----TPREAG 210
K P P P P GH EG+ + W+ G L + I +W TP+E
Sbjct: 164 KHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR 223
Query: 211 AWQVDQKPL-GGHTNSAEDLQWSDLKTAL-QTVDDPFQLAEHNKKRGKGPGIPTPPLFSF 268
+D K + GHT ED+ W L +L +V D +L + + + P +
Sbjct: 224 V--IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN----TSKPSHTV 277
Query: 269 SGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWS 328
H E + ++ +LATG + + +W R ++ H + + +QWS
Sbjct: 278 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL---KLKLHSFESHKDEIFQVQWS 334
Query: 329 PGEKRVLASCSVDLSIRIWDTRVINTKSC----------MLTLPNAHTSDVNVISWNRTE 378
P + +LAS D + +WD I + +L + HT+ ++ SWN E
Sbjct: 335 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 394
Query: 379 P-LIVSGGDDGCIHVWDL 395
P +I S +D + VW +
Sbjct: 395 PWIICSVSEDNIMQVWQM 412
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 111/272 (40%), Gaps = 45/272 (16%)
Query: 298 HIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDT-------R 350
H P +G Q D + L GH L W+P L S S D +I +WD R
Sbjct: 165 HPSKPEPSGECQPDLR-LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR 223
Query: 351 VINTKSCMLTLPNAHTSDVNVISWNRT-EPLIVSGGDDGCIHVWDLRRFKKGSSVATFKH 409
VI+ K+ HT+ V ++W+ E L S DD + +WD R T
Sbjct: 224 VIDAKNIF----TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 279
Query: 410 HTAPVTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLFIHLG 469
HTA V + ++P A+G AD +ALWD L++L +L
Sbjct: 280 HTAEVNCLSFNPYSEFILATGSADKTVALWD---------------LRNLKLKLHSFESH 324
Query: 470 QKEIKELHWHPQLPGTIISTANSGFNIF-------------RTISDLPSQLLFIHLGQ-K 515
+ EI ++ W P TI++++ + + D P +LLFIH G
Sbjct: 325 KDEIFQVQWSPH-NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 383
Query: 516 EIKELHWHPQLPGTIISTANSGFNIFRTISMS 547
+I + W+P P I S + NI + M+
Sbjct: 384 KISDFSWNPNEPWIICSVSED--NIMQVWQMA 413
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 22/147 (14%)
Query: 646 TPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPR------------EAGAWS 693
+ P + H E + ++ +LATG + + +W R + +
Sbjct: 271 SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ 330
Query: 694 VYLYTNRFGVLATGDCKRNIHIWTPREAGAWQV-----DQKPLV-----GHTNSVEDLQW 743
V + +LA+ R +H+W + G Q D P + GHT + D W
Sbjct: 331 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 390
Query: 744 SPGEKRVLASCSVDRSNRIGARRDMLY 770
+P E ++ S S D ++ + +Y
Sbjct: 391 NPNEPWIICSVSEDNIMQVWQMAENVY 417
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 38/159 (23%)
Query: 640 KGPGIPTP-----PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW----TPREAG 690
K P P P P GH EG+ + W+ G L + I +W TP+E
Sbjct: 164 KHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR 223
Query: 691 ------------------AWSVYLYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKP-- 730
AW + L+ + FG +A + + IW R KP
Sbjct: 224 VIDAKNIFTGHTAVVEDVAWHL-LHESLFGSVAD---DQKLMIWDTRNNNT----SKPSH 275
Query: 731 -LVGHTNSVEDLQWSPGEKRVLASCSVDRSNRIGARRDM 768
+ HT V L ++P + +LA+ S D++ + R++
Sbjct: 276 TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 314
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 45/136 (33%), Gaps = 39/136 (28%)
Query: 169 LFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAED 228
L SF H E F + WS +LA+ R +H+W + G Q S ED
Sbjct: 318 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ-----------STED 366
Query: 229 LQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVL 288
+ D P +L LF GH + W+ EP ++
Sbjct: 367 AE-----------DGPPEL-----------------LFIHGGHTAKISDFSWNPNEPWII 398
Query: 289 ATGDCKRNIHIWTPRE 304
+ + +W E
Sbjct: 399 CSVSEDNIMQVWQMAE 414
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 106/258 (41%), Gaps = 31/258 (12%)
Query: 160 KGPGIPTP-----PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW----TPREAG 210
K P P P P GH EG+ + W+ G L + I +W TP+E
Sbjct: 162 KHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR 221
Query: 211 AWQVDQKPL-GGHTNSAEDLQWSDLKTAL-QTVDDPFQLAEHNKKRGKGPGIPTPPLFSF 268
+D K + GHT ED+ W L +L +V D +L + + + P +
Sbjct: 222 V--IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN----TSKPSHTV 275
Query: 269 SGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWS 328
H E + ++ +LATG + + +W R ++ H + + +QWS
Sbjct: 276 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL---KLKLHSFESHKDEIFQVQWS 332
Query: 329 PGEKRVLASCSVDLSIRIWDTRVINTKSC----------MLTLPNAHTSDVNVISWNRTE 378
P + +LAS D + +WD I + +L + HT+ ++ SWN E
Sbjct: 333 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 392
Query: 379 P-LIVSGGDDGCIHVWDL 395
P +I S +D + VW +
Sbjct: 393 PWIICSVSEDNIMQVWQM 410
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 111/272 (40%), Gaps = 45/272 (16%)
Query: 298 HIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDT-------R 350
H P +G Q D + L GH L W+P L S S D +I +WD R
Sbjct: 163 HPSKPEPSGECQPDLR-LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR 221
Query: 351 VINTKSCMLTLPNAHTSDVNVISWNRT-EPLIVSGGDDGCIHVWDLRRFKKGSSVATFKH 409
VI+ K+ HT+ V ++W+ E L S DD + +WD R T
Sbjct: 222 VIDAKNIF----TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 277
Query: 410 HTAPVTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLFIHLG 469
HTA V + ++P A+G AD +ALWD L++L +L
Sbjct: 278 HTAEVNCLSFNPYSEFILATGSADKTVALWD---------------LRNLKLKLHSFESH 322
Query: 470 QKEIKELHWHPQLPGTIISTANSGFNIF-------------RTISDLPSQLLFIHLGQ-K 515
+ EI ++ W P TI++++ + + D P +LLFIH G
Sbjct: 323 KDEIFQVQWSPH-NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 381
Query: 516 EIKELHWHPQLPGTIISTANSGFNIFRTISMS 547
+I + W+P P I S + NI + M+
Sbjct: 382 KISDFSWNPNEPWIICSVSED--NIMQVWQMA 411
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 22/147 (14%)
Query: 646 TPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPR------------EAGAWS 693
+ P + H E + ++ +LATG + + +W R + +
Sbjct: 269 SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ 328
Query: 694 VYLYTNRFGVLATGDCKRNIHIWTPREAGAWQV-----DQKPLV-----GHTNSVEDLQW 743
V + +LA+ R +H+W + G Q D P + GHT + D W
Sbjct: 329 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 388
Query: 744 SPGEKRVLASCSVDRSNRIGARRDMLY 770
+P E ++ S S D ++ + +Y
Sbjct: 389 NPNEPWIICSVSEDNIMQVWQMAENVY 415
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 38/159 (23%)
Query: 640 KGPGIPTP-----PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW----TPREAG 690
K P P P P GH EG+ + W+ G L + I +W TP+E
Sbjct: 162 KHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR 221
Query: 691 ------------------AWSVYLYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKP-- 730
AW + L+ + FG +A + + IW R KP
Sbjct: 222 VIDAKNIFTGHTAVVEDVAWHL-LHESLFGSVAD---DQKLMIWDTRNNNT----SKPSH 273
Query: 731 -LVGHTNSVEDLQWSPGEKRVLASCSVDRSNRIGARRDM 768
+ HT V L ++P + +LA+ S D++ + R++
Sbjct: 274 TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 312
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 45/136 (33%), Gaps = 39/136 (28%)
Query: 169 LFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAED 228
L SF H E F + WS +LA+ R +H+W + G Q S ED
Sbjct: 316 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ-----------STED 364
Query: 229 LQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVL 288
+ D P +L LF GH + W+ EP ++
Sbjct: 365 AE-----------DGPPEL-----------------LFIHGGHTAKISDFSWNPNEPWII 396
Query: 289 ATGDCKRNIHIWTPRE 304
+ + +W E
Sbjct: 397 CSVSEDNIMQVWQMAE 412
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 106/258 (41%), Gaps = 31/258 (12%)
Query: 160 KGPGIPTP-----PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW----TPREAG 210
K P P P P GH EG+ + W+ G L + I +W TP+E
Sbjct: 160 KHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR 219
Query: 211 AWQVDQKPL-GGHTNSAEDLQWSDLKTAL-QTVDDPFQLAEHNKKRGKGPGIPTPPLFSF 268
+D K + GHT ED+ W L +L +V D +L + + + P +
Sbjct: 220 V--IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN----TSKPSHTV 273
Query: 269 SGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWS 328
H E + ++ +LATG + + +W R ++ H + + +QWS
Sbjct: 274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL---KLKLHSFESHKDEIFQVQWS 330
Query: 329 PGEKRVLASCSVDLSIRIWDTRVINTKSC----------MLTLPNAHTSDVNVISWNRTE 378
P + +LAS D + +WD I + +L + HT+ ++ SWN E
Sbjct: 331 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 390
Query: 379 P-LIVSGGDDGCIHVWDL 395
P +I S +D + VW +
Sbjct: 391 PWIICSVSEDNIMQVWQM 408
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 111/272 (40%), Gaps = 45/272 (16%)
Query: 298 HIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDT-------R 350
H P +G Q D + L GH L W+P L S S D +I +WD R
Sbjct: 161 HPSKPEPSGECQPDLR-LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR 219
Query: 351 VINTKSCMLTLPNAHTSDVNVISWNRT-EPLIVSGGDDGCIHVWDLRRFKKGSSVATFKH 409
VI+ K+ HT+ V ++W+ E L S DD + +WD R T
Sbjct: 220 VIDAKNIF----TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 275
Query: 410 HTAPVTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLFIHLG 469
HTA V + ++P A+G AD +ALWD L++L +L
Sbjct: 276 HTAEVNCLSFNPYSEFILATGSADKTVALWD---------------LRNLKLKLHSFESH 320
Query: 470 QKEIKELHWHPQLPGTIISTANSGFNIF-------------RTISDLPSQLLFIHLGQ-K 515
+ EI ++ W P TI++++ + + D P +LLFIH G
Sbjct: 321 KDEIFQVQWSPH-NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 379
Query: 516 EIKELHWHPQLPGTIISTANSGFNIFRTISMS 547
+I + W+P P I S + NI + M+
Sbjct: 380 KISDFSWNPNEPWIICSVSED--NIMQVWQMA 409
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 22/147 (14%)
Query: 646 TPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPR------------EAGAWS 693
+ P + H E + ++ +LATG + + +W R + +
Sbjct: 267 SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ 326
Query: 694 VYLYTNRFGVLATGDCKRNIHIWTPREAGAWQV-----DQKPLV-----GHTNSVEDLQW 743
V + +LA+ R +H+W + G Q D P + GHT + D W
Sbjct: 327 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 386
Query: 744 SPGEKRVLASCSVDRSNRIGARRDMLY 770
+P E ++ S S D ++ + +Y
Sbjct: 387 NPNEPWIICSVSEDNIMQVWQMAENVY 413
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 38/159 (23%)
Query: 640 KGPGIPTP-----PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW----TPREAG 690
K P P P P GH EG+ + W+ G L + I +W TP+E
Sbjct: 160 KHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR 219
Query: 691 ------------------AWSVYLYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKP-- 730
AW + L+ + FG +A + + IW R KP
Sbjct: 220 VIDAKNIFTGHTAVVEDVAWHL-LHESLFGSVAD---DQKLMIWDTRNNNT----SKPSH 271
Query: 731 -LVGHTNSVEDLQWSPGEKRVLASCSVDRSNRIGARRDM 768
+ HT V L ++P + +LA+ S D++ + R++
Sbjct: 272 TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 310
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 45/136 (33%), Gaps = 39/136 (28%)
Query: 169 LFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAED 228
L SF H E F + WS +LA+ R +H+W + G Q S ED
Sbjct: 314 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ-----------STED 362
Query: 229 LQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVL 288
+ D P +L LF GH + W+ EP ++
Sbjct: 363 AE-----------DGPPEL-----------------LFIHGGHTAKISDFSWNPNEPWII 394
Query: 289 ATGDCKRNIHIWTPRE 304
+ + +W E
Sbjct: 395 CSVSEDNIMQVWQMAE 410
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 105/258 (40%), Gaps = 31/258 (12%)
Query: 160 KGPGIPTP-----PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW----TPREAG 210
K P P P P GH EG+ + W+ G L + I +W P+E
Sbjct: 156 KHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGK 215
Query: 211 AWQVDQKPL-GGHTNSAEDLQWSDLKTAL-QTVDDPFQLAEHNKKRGKGPGIPTPPLFSF 268
VD K + GHT ED+ W L +L +V D +L + + + P S
Sbjct: 216 V--VDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNT----SKPSHSV 269
Query: 269 SGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWS 328
H E + ++ +LATG + + +W R ++ H + + +QWS
Sbjct: 270 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL---KLKLHSFESHKDEIFQVQWS 326
Query: 329 PGEKRVLASCSVDLSIRIWDTRVINTKSC----------MLTLPNAHTSDVNVISWNRTE 378
P + +LAS D + +WD I + +L + HT+ ++ SWN E
Sbjct: 327 PHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNE 386
Query: 379 P-LIVSGGDDGCIHVWDL 395
P +I S +D + VW +
Sbjct: 387 PWVICSVSEDNIMQVWQM 404
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 103/250 (41%), Gaps = 34/250 (13%)
Query: 315 LVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCML---TLPNAHTSDVNV 371
L GH L W+P L S S D +I +WD + + ++ T+ HT+ V
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 372 ISWNRT-EPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASG 430
+SW+ E L S DD + +WD R + HTA V + ++P A+G
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 292
Query: 431 GADDQIALWDLAVERDSEIEQREAELKDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTA 490
AD +ALWD L++L +L + EI ++ W P + S+
Sbjct: 293 SADKTVALWD---------------LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 337
Query: 491 -NSGFNIF-----------RTISDLPSQLLFIHLGQ-KEIKELHWHPQLPGTIISTANSG 537
+ N++ D P +LLFIH G +I + W+P P I S +
Sbjct: 338 TDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED- 396
Query: 538 FNIFRTISMS 547
NI + M+
Sbjct: 397 -NIMQVWQMA 405
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 22/147 (14%)
Query: 646 TPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPR------------EAGAWS 693
+ P S H E + ++ +LATG + + +W R + +
Sbjct: 263 SKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ 322
Query: 694 VYLYTNRFGVLATGDCKRNIHIWTPREAGAWQV-----DQKPLV-----GHTNSVEDLQW 743
V + +LA+ R +++W + G Q D P + GHT + D W
Sbjct: 323 VQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSW 382
Query: 744 SPGEKRVLASCSVDRSNRIGARRDMLY 770
+P E V+ S S D ++ + +Y
Sbjct: 383 NPNEPWVICSVSEDNIMQVWQMAENIY 409
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 30/155 (19%)
Query: 640 KGPGIPTP-----PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW----TPREA- 689
K P P P P GH EG+ + W+ G L + I +W P+E
Sbjct: 156 KHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGK 215
Query: 690 --GAWSVY--------------LYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKPLVG 733
A +++ L+ + FG +A + + IW R + +
Sbjct: 216 VVDAKTIFTGHTAVVEDVSWHLLHESLFGSVAD---DQKLMIWDTRSNNTSKPSHS-VDA 271
Query: 734 HTNSVEDLQWSPGEKRVLASCSVDRSNRIGARRDM 768
HT V L ++P + +LA+ S D++ + R++
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 306
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 15/177 (8%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQ 326
+ SGH + WSS + +L + + + IW K L GH+N V
Sbjct: 63 TISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCN 117
Query: 327 WSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGD 386
++P + ++ S S D S+RIWD + T C+ TLP AH+ V+ + +NR LIVS
Sbjct: 118 FNP-QSNLIVSGSFDESVRIWDVK---TGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSY 172
Query: 387 DGCIHVWDLRRFKKGSSVATF-KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
DG +WD G + T PV+ V++ P A+ D+ + LWD +
Sbjct: 173 DGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYS 225
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 120/302 (39%), Gaps = 32/302 (10%)
Query: 156 KKRGKGPGIPTPPL---FSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAW 212
++ G+G P F+ +GH T+ + S LA+ + I IW +
Sbjct: 3 QQMGRGSEFVKPNYALKFTLAGH-TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF- 60
Query: 213 QVDQKPLGGHTNSAEDLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHL 272
+K + GH D+ WS L + D L + GK L + GH
Sbjct: 61 ---EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------CLKTLKGHS 110
Query: 273 TEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEK 332
F ++ + + ++ +G ++ IW + K L H++ V + ++ +
Sbjct: 111 NYVFCCNF-NPQSNLIVSGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNR-DG 164
Query: 333 RVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHV 392
++ S S D RIWDT + C+ TL + V+ + ++ I++ D + +
Sbjct: 165 SLIVSSSYDGLCRIWDTA---SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 393 WDLRRFKKGSSVATFKHHTAPVTTV--EWHPTESSTFASGGADDQIALWDLAVERDSEIE 450
WD + KG + T+ H + + T SG D+ + +W+L + EI
Sbjct: 222 WD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIV 275
Query: 451 QR 452
Q+
Sbjct: 276 QK 277
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 15/177 (8%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQ 326
+ SGH + WSS + +L + + + IW K L GH+N V
Sbjct: 63 TISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCN 117
Query: 327 WSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGD 386
++P + ++ S S D S+RIWD + T C+ TLP AH+ V+ + +NR LIVS
Sbjct: 118 FNP-QSNLIVSGSFDESVRIWDVK---TGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSY 172
Query: 387 DGCIHVWDLRRFKKGSSVATF-KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
DG +WD G + T PV+ V++ P A+ D+ + LWD +
Sbjct: 173 DGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYS 225
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 120/302 (39%), Gaps = 32/302 (10%)
Query: 156 KKRGKGPGIPTPPL---FSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAW 212
++ G+G P F+ +GH T+ + S LA+ + I IW +
Sbjct: 3 QQMGRGSEFVKPNYALKFTLAGH-TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF- 60
Query: 213 QVDQKPLGGHTNSAEDLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHL 272
+K + GH D+ WS L + D L + GK L + GH
Sbjct: 61 ---EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------CLKTLKGHS 110
Query: 273 TEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEK 332
F ++ + + ++ +G ++ IW + K L H++ V + ++ +
Sbjct: 111 NYVFCCNF-NPQSNLIVSGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNR-DG 164
Query: 333 RVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHV 392
++ S S D RIWDT + C+ TL + V+ + ++ I++ D + +
Sbjct: 165 SLIVSSSYDGLCRIWDTA---SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 393 WDLRRFKKGSSVATFKHHTAPVTTV--EWHPTESSTFASGGADDQIALWDLAVERDSEIE 450
WD + KG + T+ H + + T SG D+ + +W+L + EI
Sbjct: 222 WD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIV 275
Query: 451 QR 452
Q+
Sbjct: 276 QK 277
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 15/177 (8%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQ 326
+ SGH + WSS + +L + + + IW K L GH+N V
Sbjct: 77 TISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCN 131
Query: 327 WSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGD 386
++P + ++ S S D S+RIWD + T C+ TLP AH+ V+ + +NR LIVS
Sbjct: 132 FNP-QSNLIVSGSFDESVRIWDVK---TGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSY 186
Query: 387 DGCIHVWDLRRFKKGSSVATF-KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
DG +WD G + T PV+ V++ P A+ D+ + LWD +
Sbjct: 187 DGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYS 239
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 114/285 (40%), Gaps = 29/285 (10%)
Query: 170 FSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDL 229
F+ +GH ++ +S LA+ + I IW + +K + GH D+
Sbjct: 34 FTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKF----EKTISGHKLGISDV 88
Query: 230 QWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLA 289
WS L + D L + GK L + GH F +++ + ++
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNP-QSNLIV 140
Query: 290 TGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDT 349
+G ++ IW + K L H++ V + ++ + ++ S S D RIWDT
Sbjct: 141 SGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT 195
Query: 350 RVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKH 409
+ C+ TL + V+ + ++ I++ D + +WD + KG + T+
Sbjct: 196 A---SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKGKCLKTYTG 249
Query: 410 HTAPVTTV--EWHPTESSTFASGGADDQIALWDLAVERDSEIEQR 452
H + + T SG D+ + +W+L + EI Q+
Sbjct: 250 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQK 291
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 15/177 (8%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQ 326
+ SGH + WSS + +L + + + IW K L GH+N V
Sbjct: 66 TISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCN 120
Query: 327 WSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGD 386
++P + ++ S S D S+RIWD + T C+ TLP AH+ V+ + +NR LIVS
Sbjct: 121 FNP-QSNLIVSGSFDESVRIWDVK---TGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSY 175
Query: 387 DGCIHVWDLRRFKKGSSVATF-KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
DG +WD G + T PV+ V++ P A+ D+ + LWD +
Sbjct: 176 DGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYS 228
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 114/285 (40%), Gaps = 29/285 (10%)
Query: 170 FSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDL 229
F+ +GH T+ + S LA+ + I IW + +K + GH D+
Sbjct: 23 FTLAGH-TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EKTISGHKLGISDV 77
Query: 230 QWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLA 289
WS L + D L + GK L + GH F +++ + ++
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKC-------LKTLKGHSNYVFCCNFNP-QSNLIV 129
Query: 290 TGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDT 349
+G ++ IW + K L H++ V + ++ + ++ S S D RIWDT
Sbjct: 130 SGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT 184
Query: 350 RVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKH 409
+ C+ TL + V+ + ++ I++ D + +WD + KG + T+
Sbjct: 185 A---SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKGKCLKTYTG 238
Query: 410 HTAPVTTV--EWHPTESSTFASGGADDQIALWDLAVERDSEIEQR 452
H + + T SG D+ + +W+L + EI Q+
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQK 280
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 15/177 (8%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQ 326
+ SGH + WSS + +L + + + IW K L GH+N V
Sbjct: 63 TISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCN 117
Query: 327 WSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGD 386
++P + ++ S S D S+RIWD + T C+ TLP AH+ V+ + +NR LIVS
Sbjct: 118 FNP-QSNLIVSGSFDESVRIWDVK---TGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSY 172
Query: 387 DGCIHVWDLRRFKKGSSVATF-KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
DG +WD G + T PV+ V++ P A+ D+ + LWD +
Sbjct: 173 DGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYS 225
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 15/134 (11%)
Query: 315 LVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW---DTRVINTKSCMLTLPNAHTSDVNV 371
L GHT +V +++SP + LA+ S D I+IW D + T S H ++
Sbjct: 22 LAGHTKAVSSVKFSPNGEW-LAASSADKLIKIWGAYDGKFEKTIS-------GHKLGISD 73
Query: 372 ISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGG 431
++W+ L+VS DD + +WD+ G + T K H+ V ++P +S+ SG
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 432 ADDQIALWDLAVER 445
D+ + +WD+ +
Sbjct: 130 FDESVRIWDVKTGK 143
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 119/302 (39%), Gaps = 32/302 (10%)
Query: 156 KKRGKGPGIPTPPL---FSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAW 212
++ G+G P F+ +GH T+ + S LA + I IW +
Sbjct: 3 QQMGRGSEFVKPNYALKFTLAGH-TKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKF- 60
Query: 213 QVDQKPLGGHTNSAEDLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHL 272
+K + GH D+ WS L + D L + GK L + GH
Sbjct: 61 ---EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------CLKTLKGHS 110
Query: 273 TEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEK 332
F +++ + ++ +G ++ IW + K L H++ V + ++ +
Sbjct: 111 NYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNR-DG 164
Query: 333 RVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHV 392
++ S S D RIWDT + C+ TL + V+ + ++ I++ D + +
Sbjct: 165 SLIVSSSYDGLCRIWDTA---SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 393 WDLRRFKKGSSVATFKHHTAPVTTV--EWHPTESSTFASGGADDQIALWDLAVERDSEIE 450
WD + KG + T+ H + + T SG D+ + +W+L + EI
Sbjct: 222 WD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIV 275
Query: 451 QR 452
Q+
Sbjct: 276 QK 277
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 15/177 (8%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQ 326
+ SGH + WSS + +L + + + IW K L GH+N V
Sbjct: 59 TISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCN 113
Query: 327 WSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGD 386
++P + ++ S S D S+RIWD + T C+ TLP AH+ V+ + +NR LIVS
Sbjct: 114 FNP-QSNLIVSGSFDESVRIWDVK---TGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSY 168
Query: 387 DGCIHVWDLRRFKKGSSVATF-KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
DG +WD G + T PV+ V++ P A+ D+ + LWD +
Sbjct: 169 DGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYS 221
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 118/297 (39%), Gaps = 30/297 (10%)
Query: 159 GKGPGIPTPPL-FSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQK 217
G P P L F+ +GH T+ + S LA+ + I IW + +K
Sbjct: 4 GSTPVKPNYALKFTLAGH-TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EK 58
Query: 218 PLGGHTNSAEDLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFA 277
+ GH D+ WS L + D L + GK L + GH F
Sbjct: 59 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFC 111
Query: 278 MDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLAS 337
+++ + ++ +G ++ IW + K L H++ V + ++ + ++ S
Sbjct: 112 CNFNP-QSNLIVSGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNR-DGSLIVS 165
Query: 338 CSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRR 397
S D RIWDT + C+ TL + V+ + ++ I++ D + +WD
Sbjct: 166 SSYDGLCRIWDTA---SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD--- 219
Query: 398 FKKGSSVATFKHHTAPVTTV--EWHPTESSTFASGGADDQIALWDLAVERDSEIEQR 452
+ KG + T+ H + + T SG D+ + +W+L + EI Q+
Sbjct: 220 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQK 273
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 15/177 (8%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQ 326
+ SGH + WSS + +L + + + IW K L GH+N V
Sbjct: 60 TISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCN 114
Query: 327 WSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGD 386
++P + ++ S S D S+RIWD + T C+ TLP AH+ V+ + +NR LIVS
Sbjct: 115 FNP-QSNLIVSGSFDESVRIWDVK---TGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSY 169
Query: 387 DGCIHVWDLRRFKKGSSVATF-KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
DG +WD G + T PV+ V++ P A+ D+ + LWD +
Sbjct: 170 DGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYS 222
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 114/285 (40%), Gaps = 29/285 (10%)
Query: 170 FSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDL 229
F+ +GH ++ +S LA+ + I IW + +K + GH D+
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKF----EKTISGHKLGISDV 71
Query: 230 QWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLA 289
WS L + D L + GK L + GH F +++ + ++
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNP-QSNLIV 123
Query: 290 TGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDT 349
+G ++ IW + K L H++ V + ++ + ++ S S D RIWDT
Sbjct: 124 SGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT 178
Query: 350 RVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKH 409
+ C+ TL + V+ + ++ I++ D + +WD + KG + T+
Sbjct: 179 A---SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKGKCLKTYTG 232
Query: 410 HTAPVTTV--EWHPTESSTFASGGADDQIALWDLAVERDSEIEQR 452
H + + T SG D+ + +W+L + EI Q+
Sbjct: 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQK 274
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 15/177 (8%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQ 326
+ SGH + WSS + +L + + + IW K L GH+N V
Sbjct: 56 TISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCN 110
Query: 327 WSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGD 386
++P + ++ S S D S+RIWD + T C+ TLP AH+ V+ + +NR LIVS
Sbjct: 111 FNP-QSNLIVSGSFDESVRIWDVK---TGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSY 165
Query: 387 DGCIHVWDLRRFKKGSSVATF-KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
DG +WD G + T PV+ V++ P A+ D+ + LWD +
Sbjct: 166 DGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYS 218
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 114/285 (40%), Gaps = 29/285 (10%)
Query: 170 FSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDL 229
F+ +GH T+ + S LA+ + I IW + +K + GH D+
Sbjct: 13 FTLAGH-TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EKTISGHKLGISDV 67
Query: 230 QWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLA 289
WS L + D L + GK L + GH F +++ + ++
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNP-QSNLIV 119
Query: 290 TGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDT 349
+G ++ IW + K L H++ V + ++ + ++ S S D RIWDT
Sbjct: 120 SGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT 174
Query: 350 RVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKH 409
+ C+ TL + V+ + ++ I++ D + +WD + KG + T+
Sbjct: 175 A---SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKGKCLKTYTG 228
Query: 410 HTAPVTTV--EWHPTESSTFASGGADDQIALWDLAVERDSEIEQR 452
H + + T SG D+ + +W+L + EI Q+
Sbjct: 229 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQK 270
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 15/177 (8%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQ 326
+ SGH + WSS + +L + + + IW K L GH+N V
Sbjct: 66 TISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCN 120
Query: 327 WSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGD 386
++P + ++ S S D S+RIWD + T C+ TLP AH+ V+ + +NR LIVS
Sbjct: 121 FNP-QSNLIVSGSFDESVRIWDVK---TGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSY 175
Query: 387 DGCIHVWDLRRFKKGSSVATF-KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
DG +WD G + T PV+ V++ P A+ D+ + LWD +
Sbjct: 176 DGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYS 228
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 114/285 (40%), Gaps = 29/285 (10%)
Query: 170 FSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDL 229
F+ +GH T+ + S LA+ + I IW + +K + GH D+
Sbjct: 23 FTLAGH-TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EKTISGHKLGISDV 77
Query: 230 QWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLA 289
WS L + D L + GK L + GH F +++ + ++
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNP-QSNLIV 129
Query: 290 TGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDT 349
+G ++ IW + K L H++ V + ++ + ++ S S D RIWDT
Sbjct: 130 SGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT 184
Query: 350 RVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKH 409
+ C+ TL + V+ + ++ I++ D + +WD + KG + T+
Sbjct: 185 A---SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKGKCLKTYTG 238
Query: 410 HTAPVTTV--EWHPTESSTFASGGADDQIALWDLAVERDSEIEQR 452
H + + T SG D+ + +W+L + EI Q+
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQK 280
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 15/177 (8%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQ 326
+ SGH + WSS + +L + + + IW K L GH+N V
Sbjct: 61 TISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCN 115
Query: 327 WSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGD 386
++P + ++ S S D S+RIWD + T C+ TLP AH+ V+ + +NR LIVS
Sbjct: 116 FNP-QSNLIVSGSFDESVRIWDVK---TGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSY 170
Query: 387 DGCIHVWDLRRFKKGSSVATF-KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
DG +WD G + T PV+ V++ P A+ D+ + LWD +
Sbjct: 171 DGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYS 223
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 114/285 (40%), Gaps = 29/285 (10%)
Query: 170 FSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDL 229
F+ +GH T+ + S LA+ + I IW + +K + GH D+
Sbjct: 18 FTLAGH-TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EKTISGHKLGISDV 72
Query: 230 QWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLA 289
WS L + D L + GK L + GH F +++ + ++
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNP-QSNLIV 124
Query: 290 TGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDT 349
+G ++ IW + K L H++ V + ++ + ++ S S D RIWDT
Sbjct: 125 SGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT 179
Query: 350 RVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKH 409
+ C+ TL + V+ + ++ I++ D + +WD + KG + T+
Sbjct: 180 A---SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKGKCLKTYTG 233
Query: 410 HTAPVTTV--EWHPTESSTFASGGADDQIALWDLAVERDSEIEQR 452
H + + T SG D+ + +W+L + EI Q+
Sbjct: 234 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQK 275
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 15/177 (8%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQ 326
+ SGH + WSS + +L + + + IW K L GH+N V
Sbjct: 60 TISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCN 114
Query: 327 WSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGD 386
++P + ++ S S D S+RIWD + T C+ TLP AH+ V+ + +NR LIVS
Sbjct: 115 FNP-QSNLIVSGSFDESVRIWDVK---TGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSY 169
Query: 387 DGCIHVWDLRRFKKGSSVATF-KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
DG +WD G + T PV+ V++ P A+ D+ + LWD +
Sbjct: 170 DGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYS 222
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 114/285 (40%), Gaps = 29/285 (10%)
Query: 170 FSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDL 229
F+ +GH T+ + S LA+ + I IW + +K + GH D+
Sbjct: 17 FTLAGH-TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EKTISGHKLGISDV 71
Query: 230 QWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLA 289
WS L + D L + GK L + GH F +++ + ++
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNP-QSNLIV 123
Query: 290 TGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDT 349
+G ++ IW + K L H++ V + ++ + ++ S S D RIWDT
Sbjct: 124 SGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT 178
Query: 350 RVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKH 409
+ C+ TL + V+ + ++ I++ D + +WD + KG + T+
Sbjct: 179 A---SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKGKCLKTYTG 232
Query: 410 HTAPVTTV--EWHPTESSTFASGGADDQIALWDLAVERDSEIEQR 452
H + + T SG D+ + +W+L + EI Q+
Sbjct: 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQK 274
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 15/177 (8%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQ 326
+ SGH + WSS + +L + + + IW K L GH+N V
Sbjct: 65 TISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCN 119
Query: 327 WSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGD 386
++P + ++ S S D S+RIWD + T C+ TLP AH+ V+ + +NR LIVS
Sbjct: 120 FNP-QSNLIVSGSFDESVRIWDVK---TGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSY 174
Query: 387 DGCIHVWDLRRFKKGSSVATF-KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
DG +WD G + T PV+ V++ P A+ D+ + LWD +
Sbjct: 175 DGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYS 227
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 114/285 (40%), Gaps = 29/285 (10%)
Query: 170 FSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDL 229
F+ +GH ++ +S LA+ + I IW + +K + GH D+
Sbjct: 22 FTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKF----EKTISGHKLGISDV 76
Query: 230 QWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLA 289
WS L + D L + GK L + GH F +++ + ++
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNP-QSNLIV 128
Query: 290 TGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDT 349
+G ++ IW + K L H++ V + ++ + ++ S S D RIWDT
Sbjct: 129 SGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT 183
Query: 350 RVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKH 409
+ C+ TL + V+ + ++ I++ D + +WD + KG + T+
Sbjct: 184 A---SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKGKCLKTYTG 237
Query: 410 HTAPVTTV--EWHPTESSTFASGGADDQIALWDLAVERDSEIEQR 452
H + + T SG D+ + +W+L + EI Q+
Sbjct: 238 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQK 279
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 15/177 (8%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQ 326
+ SGH + WSS + +L + + + IW K L GH+N V
Sbjct: 66 TISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCN 120
Query: 327 WSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGD 386
++P + ++ S S D S+RIWD + T C+ TLP AH+ V+ + +NR LIVS
Sbjct: 121 FNP-QSNLIVSGSFDESVRIWDVK---TGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSY 175
Query: 387 DGCIHVWDLRRFKKGSSVATF-KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
DG +WD G + T PV+ V++ P A+ D+ + LWD +
Sbjct: 176 DGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYS 228
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 114/285 (40%), Gaps = 29/285 (10%)
Query: 170 FSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDL 229
F+ +GH T+ + S LA+ + I IW + +K + GH D+
Sbjct: 23 FTLAGH-TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EKTISGHKLGISDV 77
Query: 230 QWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLA 289
WS L + D L + GK L + GH F +++ + ++
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCCNFNP-QSNLIV 129
Query: 290 TGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDT 349
+G ++ IW + K L H++ V + ++ + ++ S S D RIWDT
Sbjct: 130 SGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDT 184
Query: 350 RVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKH 409
+ C+ TL + V+ + ++ I++ D + +WD + KG + T+
Sbjct: 185 A---SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKGKCLKTYTG 238
Query: 410 HTAPVTTV--EWHPTESSTFASGGADDQIALWDLAVERDSEIEQR 452
H + + T SG D+ + +W+L + EI Q+
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQK 280
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 15/177 (8%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQ 326
+ SGH + WSS + +L + + + IW K L GH+N V
Sbjct: 84 TISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCN 138
Query: 327 WSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGD 386
++P + ++ S S D S+RIWD + T C+ TLP AH+ V+ + +NR LIVS
Sbjct: 139 FNP-QSNLIVSGSFDESVRIWD---VKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSY 193
Query: 387 DGCIHVWDLRRFKKGSSVATF-KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
DG +WD G + T PV+ V++ P A+ D+ + LWD +
Sbjct: 194 DGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYS 246
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 116/286 (40%), Gaps = 31/286 (10%)
Query: 170 FSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVD-QKPLGGHTNSAED 228
F+ +GH ++ +S LA+ + I IW GA+ +K + GH D
Sbjct: 41 FTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIW-----GAYDGKFEKTISGHKLGISD 94
Query: 229 LQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVL 288
+ WS L + D L + GK L + GH F +++ + ++
Sbjct: 95 VAWSSDSNLLVSASDDKTLKIWDVSSGKC-------LKTLKGHSNYVFCCNFNP-QSNLI 146
Query: 289 ATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWD 348
+G ++ IW + K L H++ V + ++ + ++ S S D RIWD
Sbjct: 147 VSGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 201
Query: 349 TRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFK 408
T + C+ TL + V+ + ++ I++ D + +WD + KG + T+
Sbjct: 202 TA---SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKGKCLKTYT 255
Query: 409 HHTAPVTTV--EWHPTESSTFASGGADDQIALWDLAVERDSEIEQR 452
H + + T SG D+ + +W+L + EI Q+
Sbjct: 256 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQK 298
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 33/188 (17%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW------------TPREAGAWQVDQKP 314
+F GH + ++ +P A+G R + +W T +E G VD P
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 315 LVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISW 374
L +K + + S DL+I+IWD + TKSC+ TL H S+V+ +
Sbjct: 195 L--------------PDKPYMITASDDLTIKIWDYQ---TKSCVATL-EGHMSNVSFAVF 236
Query: 375 NRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADD 434
+ T P+I+SG +DG + +W+ +K ++ + + T HPT + + G D+
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIAT---HPTGRKNYIASGFDN 293
Query: 435 QIALWDLA 442
+ L
Sbjct: 294 GFTVLSLG 301
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 18/179 (10%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVE 323
+FS +D+ TEP VL T R + +W T E + QV + P+
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGR-VELWNYETQVEVRSIQVTETPVRAGK---- 62
Query: 324 DLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVS 383
K + S D IR+++ NT ++ AH + I+ + T+P ++S
Sbjct: 63 ----FIARKNWIIVGSDDFRIRVFN---YNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLS 114
Query: 384 GGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
G DD + +W+ + TF+ H V V ++P + STFASG D + +W L
Sbjct: 115 GSDDLTVKLWNWE--NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 33/188 (17%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW------------TPREAGAWQVDQKP 314
+F GH + ++ +P A+G R + +W T +E G VD P
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 315 LVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISW 374
L +K + + S DL+I+IWD + TKSC+ TL H S+V+ +
Sbjct: 195 L--------------PDKPYMITASDDLTIKIWDYQ---TKSCVATLE-GHMSNVSFAVF 236
Query: 375 NRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADD 434
+ T P+I+SG +DG + +W+ +K ++ + + T HPT + + G D+
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIAT---HPTGRKNYIASGFDN 293
Query: 435 QIALWDLA 442
+ L
Sbjct: 294 GFTVLSLG 301
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 78/179 (43%), Gaps = 18/179 (10%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVE 323
+FS +D+ TEP VL T R + IW T E + QV + P+
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGR-VEIWNYETQVEVRSIQVTETPVRAGK---- 62
Query: 324 DLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVS 383
K + S D IR+++ NT ++ AH + I+ + T+P ++S
Sbjct: 63 ----FIARKNWIIVGSDDFRIRVFN---YNTGEKVVDFE-AHPDYIRSIAVHPTKPYVLS 114
Query: 384 GGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
G DD + +W+ + TF+ H V V ++P + STFASG D + +W L
Sbjct: 115 GSDDLTVKLWNWE--NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 15/177 (8%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQ 326
+ SGH + WSS + +L + + + IW K L GH+N V
Sbjct: 63 TISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCN 117
Query: 327 WSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGD 386
++P + ++ S S D S+RIWD + T C+ TLP AH+ V+ + +NR LIVS
Sbjct: 118 FNP-QSNLIVSGSFDESVRIWDVK---TGMCLKTLP-AHSDPVSAVHFNRDGSLIVSSSY 172
Query: 387 DGCIHVWDLRRFKKGSSVATF-KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
DG +WD G + T PV+ V++ P A+ D+ + LWD +
Sbjct: 173 DGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNDLKLWDYS 225
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/296 (21%), Positives = 118/296 (39%), Gaps = 35/296 (11%)
Query: 165 PTPP------LFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKP 218
PTP +F+ +GH T+ + S LA+ + I IW + +K
Sbjct: 9 PTPVKPNYALMFTLAGH-TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EKT 63
Query: 219 LGGHTNSAEDLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAM 278
+ GH D+ WS L + D L + GK L + GH F
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCC 116
Query: 279 DWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASC 338
+++ + ++ +G ++ IW + K L H++ V + ++ + ++ S
Sbjct: 117 NFNP-QSNLIVSGSFDESVRIWDVKTGMC----LKTLPAHSDPVSAVHFNR-DGSLIVSS 170
Query: 339 SVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRF 398
S D RIWDT + C+ TL + V+ + ++ I++ D + +WD +
Sbjct: 171 SYDGLCRIWDTA---SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD---Y 224
Query: 399 KKGSSVATFKHHTAPVTTV--EWHPTESSTFASGGADDQIALWDLAVERDSEIEQR 452
KG + T+ H + + T SG D+ + +W+L + EI Q+
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTK---EIVQK 277
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 11/177 (6%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQ 326
+F GH + ++ +P A+G R + +W+ G + G V +
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS---LGQSTPNFTLTTGQERGVNYVD 191
Query: 327 WSP-GEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGG 385
+ P +K + + S DL+I+IWD + TKSC+ TL H S+V+ ++ T P+I+SG
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQ---TKSCVATL-EGHMSNVSFAVFHPTLPIIISGS 247
Query: 386 DDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+DG + +W+ +K ++ + + T HPT + + G D+ + L
Sbjct: 248 EDGTLKIWNSSTYKVEKTLNVGLERSWCIAT---HPTGRKNYIASGFDNGFTVLSLG 301
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 18/179 (10%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVE 323
+FS +D+ TEP VL T R + +W T E + QV + P+
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGR-VELWNYETQVEVRSIQVTETPVRAGK---- 62
Query: 324 DLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVS 383
K + S D IR+++ NT ++ AH + I+ + T+P ++S
Sbjct: 63 ----FIARKNWIIVGSDDFRIRVFN---YNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLS 114
Query: 384 GGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
G DD + +W+ + TF+ H V V ++P + STFASG D + +W L
Sbjct: 115 GSDDLTVKLWNWE--NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 11/177 (6%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQ 326
+F GH + ++ +P A+G R + +W+ G + G V +
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS---LGQSTPNFTLTTGQERGVNYVD 191
Query: 327 WSP-GEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGG 385
+ P +K + + S DL+I+IWD + TKSC+ TL H S+V+ ++ T P+I+SG
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQ---TKSCVATL-EGHMSNVSFAVFHPTLPIIISGS 247
Query: 386 DDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+DG + +W+ +K ++ + + T HPT + + G D+ + L
Sbjct: 248 EDGTLKIWNSSTYKVEKTLNVGLERSWCIAT---HPTGRKNYIASGFDNGFTVLSLG 301
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 18/179 (10%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVE 323
+FS +D+ TEP VL T R + +W T E + QV + P+
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGR-VELWNYETQVEVRSIQVTETPVRAGK---- 62
Query: 324 DLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVS 383
K + S D IR+++ NT ++ AH + I+ + T+P ++S
Sbjct: 63 ----FIARKNWIIVGSDDFRIRVFN---YNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLS 114
Query: 384 GGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
G DD + +W+ + TF+ H V V ++P + STFASG D + +W L
Sbjct: 115 GSDDLTVKLWNWE--NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 15/177 (8%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQ 326
+ SGH + WSS + +L + + + IW K L GH+N V
Sbjct: 82 TISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCN 136
Query: 327 WSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGD 386
++P + ++ S S D S+RIWD + T C+ TLP AH+ V+ + +NR LIVS
Sbjct: 137 FNP-QSNLIVSGSFDESVRIWD---VKTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSY 191
Query: 387 DGCIHVWDLRRFKKGSSVATF-KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
DG +WD G + T PV+ V++ P A+ D+ + LWD +
Sbjct: 192 DGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYS 244
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 116/286 (40%), Gaps = 31/286 (10%)
Query: 170 FSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVD-QKPLGGHTNSAED 228
F+ +GH ++ +S LA+ + I IW GA+ +K + GH D
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIW-----GAYDGKFEKTISGHKLGISD 92
Query: 229 LQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVL 288
+ WS L + D L + GK L + GH F +++ + ++
Sbjct: 93 VAWSSDSNLLVSASDDKTLKIWDVSSGKC-------LKTLKGHSNYVFCCNFNP-QSNLI 144
Query: 289 ATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWD 348
+G ++ IW + K L H++ V + ++ + ++ S S D RIWD
Sbjct: 145 VSGSFDESVRIWDVKTGKC----LKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 199
Query: 349 TRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFK 408
T + C+ TL + V+ + ++ I++ D + +WD + KG + T+
Sbjct: 200 TA---SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKGKCLKTYT 253
Query: 409 HHTAPVTTV--EWHPTESSTFASGGADDQIALWDLAVERDSEIEQR 452
H + + T SG D+ + +W+L + EI Q+
Sbjct: 254 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQK 296
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 15/177 (8%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQ 326
+ SGH + WSS + +L + + + IW K L GH+N V
Sbjct: 63 TISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCN 117
Query: 327 WSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGD 386
++P + ++ S S D S+RIWD + T C+ TLP AH+ V+ + +NR LIVS
Sbjct: 118 FNP-QSNLIVSGSFDESVRIWDVK---TGMCLKTLP-AHSDPVSAVHFNRDGSLIVSSSY 172
Query: 387 DGCIHVWDLRRFKKGSSVATF-KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
DG +WD G + T PV+ V++ P A+ D+ + LWD +
Sbjct: 173 DGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYS 225
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 119/296 (40%), Gaps = 35/296 (11%)
Query: 165 PTPP------LFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKP 218
PTP +F+ +GH ++ +S LA+ + I IW + +K
Sbjct: 9 PTPVKPNYALMFTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKF----EKT 63
Query: 219 LGGHTNSAEDLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAM 278
+ GH D+ WS L + D L + GK L + GH F
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-------CLKTLKGHSNYVFCC 116
Query: 279 DWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASC 338
+++ + ++ +G ++ IW + + K L H++ V + ++ + ++ S
Sbjct: 117 NFNP-QSNLIVSGSFDESVRIWDVKTG----MCLKTLPAHSDPVSAVHFNR-DGSLIVSS 170
Query: 339 SVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRF 398
S D RIWDT + C+ TL + V+ + ++ I++ D + +WD +
Sbjct: 171 SYDGLCRIWDTA---SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD---Y 224
Query: 399 KKGSSVATFKHHTAPVTTV--EWHPTESSTFASGGADDQIALWDLAVERDSEIEQR 452
KG + T+ H + + T SG D+ + +W+L + EI Q+
Sbjct: 225 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTK---EIVQK 277
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 18/204 (8%)
Query: 252 KKRGKGPGIPTPP-LFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQV 310
+KR IP PP ++ SGH + + + V+ + I +W E G ++
Sbjct: 87 QKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVW-DYETGDFE- 143
Query: 311 DQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVN 370
+ L GHT+SV+D+ + K +LASCS D++I++WD + C+ T+ + H +V+
Sbjct: 144 --RTLKGHTDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFE---CIRTM-HGHDHNVS 196
Query: 371 VISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASG 430
+S IVS D I +W++ + G V TF H V V P + T +
Sbjct: 197 SVSIMPNGDHIVSASRDKTIKMWEV---QTGYCVKTFTGHREWVRMVR--PNQDGTLIAS 251
Query: 431 GADDQ-IALWDLAVERDSEIEQRE 453
++DQ + +W +A ++ + E RE
Sbjct: 252 CSNDQTVRVWVVAT-KECKAELRE 274
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 10/116 (8%)
Query: 282 STEPG-VLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSV 340
S +PG L +G + I +W LVGH N V + + G K +L SC+
Sbjct: 304 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMT----LVGHDNWVRGVLFHSGGKFIL-SCAD 358
Query: 341 DLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLR 396
D ++R+WD + K CM TL NAH V + +++T P +V+G D + VW+ R
Sbjct: 359 DKTLRVWDYK---NKRCMKTL-NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 335 LASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWD 394
L S S D +I++WD ++T C++TL H + V + ++ I+S DD + VWD
Sbjct: 311 LLSGSRDKTIKMWD---VSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
Query: 395 LRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWD 440
+K + T H VT++++H T + +G D + +W+
Sbjct: 367 ---YKNKRCMKTLNAHEHFVTSLDFHKT-APYVVTGSVDQTVKVWE 408
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 14/94 (14%)
Query: 678 KRNIHIWTPREAGAWSV---------YLYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQ 728
KR+ W PR +++ ++ F V+ + I +W E G ++
Sbjct: 88 KRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW-DYETGDFE--- 143
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ L GHT+SV+D+ + K +LASCS D + ++
Sbjct: 144 RTLKGHTDSVQDISFDHSGK-LLASCSADMTIKL 176
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 99/238 (41%), Gaps = 36/238 (15%)
Query: 309 QVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSD 368
Q + + GH V L W+ + VL+S S +I D R+ N + L H+S+
Sbjct: 166 QTKLRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTL---QGHSSE 219
Query: 369 VNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATF--KHHTAPVTTVEWHPTESST 426
V ++W + SGG+D + +WD R SS+ F +H A V V W P +S+
Sbjct: 220 VCGLAWRSDGLQLASGGNDNVVQIWDAR-----SSIPKFTKTNHNAAVKAVAWCPWQSNL 274
Query: 427 FASGGA--DDQIALWDLAVERDSEIEQREAELKDLPSQL--LFIHLGQKEIKELHWHPQL 482
A+GG D QI W+ A D SQ+ L KEI H P
Sbjct: 275 LATGGGTMDKQIHFWNAAT-------GARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDN 327
Query: 483 PGTIISTANSGFNIFRTISDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTANSGFNI 540
+I S ++SG I +++L+ L G I+STA S N+
Sbjct: 328 NLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD------------GRILSTAASDENL 373
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 109/240 (45%), Gaps = 23/240 (9%)
Query: 315 LVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISW 374
L GH N V+ + W+P +LA+CS D S+ +W+ + C+ L N+HT DV + W
Sbjct: 101 LEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEEDEYECVSVL-NSHTQDVKHVVW 158
Query: 375 NRTEPLIVSGGDDGCIHVWDLRRFKKGSSV--ATFKHHTAPVTTVEWHPTESSTFASGGA 432
+ ++ L+ S D + L R ++ V AT + H + V ++ + P+ AS
Sbjct: 159 HPSQELLASASYDDTVK---LYREEEDDWVCCATLEGHESTVWSLAFDPS-GQRLASCSD 214
Query: 433 DDQIALWDLAVERDSEIEQREAELKDLPSQLLFIHLG---QKEIKELHWHPQLPGTIIST 489
D + +W + + EQ A PS L + I ++ W QL G + +
Sbjct: 215 DRTVRIWRQYLPGN---EQGVACSGSDPSWKCICTLSGFHSRTIYDIAW-CQLTGALATA 270
Query: 490 A-NSGFNIFR----TISDLPSQLLFIHLGQ---KEIKELHWHPQLPGTIISTANSGFNIF 541
+ +F+ + P+ L HL Q +++ + W+P+ PG + S ++ G F
Sbjct: 271 CGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAF 330
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 5/153 (3%)
Query: 287 VLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRI 346
+LA+ R I IW E +W GH +V + WSP LAS S D + I
Sbjct: 30 LLASCGGDRRIRIWGT-EGDSWICKSVLSEGHQRTVRKVAWSPC-GNYLASASFDATTCI 87
Query: 347 WDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVAT 406
W + + C+ TL H ++V ++W + L+ + D + VW++ + V+
Sbjct: 88 W-KKNQDDFECVTTL-EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV 145
Query: 407 FKHHTAPVTTVEWHPTESSTFASGGADDQIALW 439
HT V V WHP++ AS DD + L+
Sbjct: 146 LNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLY 177
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 31/149 (20%)
Query: 315 LVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKS------------CMLTLP 362
L GH ++V L + P +R LASCS D ++RIW + + C+ TL
Sbjct: 190 LEGHESTVWSLAFDPSGQR-LASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS 248
Query: 363 NAHTSDVNVISWNR-TEPLIVSGGDDGCIHVWDLRRFKKGS---------SVATFKH--H 410
H+ + I+W + T L + GDD +R F++ S+ H H
Sbjct: 249 GFHSRTIYDIAWCQLTGALATACGDDA------IRVFQEDPNSDPQQPTFSLTAHLHQAH 302
Query: 411 TAPVTTVEWHPTESSTFASGGADDQIALW 439
+ V V W+P E AS D ++A W
Sbjct: 303 SQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 72/332 (21%), Positives = 133/332 (40%), Gaps = 56/332 (16%)
Query: 191 VLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQWSDLKTALQTVDDPFQLAEH 250
+LA+ R I IW E +W GH + + WS L +
Sbjct: 30 LLASCGGDRRIRIWGT-EGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88
Query: 251 NKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQV 310
K + + T GH E ++ W+ + +LAT C R+ +W W+V
Sbjct: 89 KKNQDDFECVTT-----LEGHENEVKSVAWAPS-GNLLAT--CSRDKSVWV------WEV 134
Query: 311 DQKP-------LVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPN 363
D++ L HT V+ + W P ++ +LAS S D +++++ + C TL
Sbjct: 135 DEEDEYECVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEE-DDWVCCATL-E 191
Query: 364 AHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGS--------------SVATFK- 408
H S V ++++ + + S DD + +W R++ G+ + T
Sbjct: 192 GHESTVWSLAFDPSGQRLASCSDDRTVRIW--RQYLPGNEQGVACSGSDPSWKCICTLSG 249
Query: 409 HHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLFIHL 468
H+ + + W + A+ DD I + + +S+ +Q P+ L HL
Sbjct: 250 FHSRTIYDIAWCQL-TGALATACGDDAIRV--FQEDPNSDPQQ--------PTFSLTAHL 298
Query: 469 GQ---KEIKELHWHPQLPGTIISTANSGFNIF 497
Q +++ + W+P+ PG + S ++ G F
Sbjct: 299 HQAHSQDVNCVAWNPKEPGLLASCSDDGEVAF 330
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 100/254 (39%), Gaps = 45/254 (17%)
Query: 171 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKP-------LGGHT 223
+ GH E ++ W+ + +LAT C R+ +W W+VD++ L HT
Sbjct: 100 TLEGHENEVKSVAWAPS-GNLLAT--CSRDKSVWV------WEVDEEDEYECVSVLNSHT 150
Query: 224 NSAEDLQW--SDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWS 281
+ + W S A + DD +L + + GH + +++ +
Sbjct: 151 QDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA-------TLEGHESTVWSLAFD 203
Query: 282 STEPGVLATGDCKRNIHIWTPREAG------------AWQVDQKPLVGHTNSVEDLQWSP 329
+ + + D R + IW G +W+ H+ ++ D+ W
Sbjct: 204 PSGQRLASCSD-DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ 262
Query: 330 GEKRVLASCSVDLSIRIWDTRVIN-----TKSCMLTLPNAHTSDVNVISWNRTEP-LIVS 383
+ +C D +IR++ + T S L AH+ DVN ++WN EP L+ S
Sbjct: 263 LTGALATACGDD-AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS 321
Query: 384 GGDDGCIHVWDLRR 397
DDG + W +R
Sbjct: 322 CSDDGEVAFWKYQR 335
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 32/220 (14%)
Query: 334 VLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVW 393
V A+ S D S+ +W +++ + +L S N + W+ +I D+G + ++
Sbjct: 37 VDANFSTDSSLELWSLLAADSEKPIASL--QVDSKFNDLDWSHNNKIIAGALDNGSLELY 94
Query: 394 DLRRFKKG-SSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQR 452
+S+A F +H++ V TV+++ + + ASGG + +I +WD+ +S
Sbjct: 95 STNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTES----- 149
Query: 453 EAELKDLPSQLLFIHLGQK-----EIKELHWHPQLPGTIISTANSGFNIFRTISDLPSQL 507
PS + GQ E+ L W+ L A++G + F +I DL ++
Sbjct: 150 -------PSNYTPLTPGQSMSSVDEVISLAWNQSLAHVF---ASAGSSNFASIWDLKAKK 199
Query: 508 LFIHLG--------QKEIKELHWHPQLPGTIISTANSGFN 539
IHL ++++ + WHP+ T ++TA N
Sbjct: 200 EVIHLSYTSPNSGIKQQLSVVEWHPK-NSTRVATATGSDN 238
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 74/185 (40%), Gaps = 14/185 (7%)
Query: 268 FSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPL-----VGHTNSV 322
FS H + + +++ + VLA+G I IW + + PL + + V
Sbjct: 109 FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168
Query: 323 EDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCM-LTLPNAH-TSDVNVISW---NRT 377
L W+ V AS IWD + + T PN+ ++V+ W N T
Sbjct: 169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST 228
Query: 378 EPLIVSGGD-DGCIHVWDLRRFKKGSSVATFKH-HTAPVTTVEWHPTESSTFASGGADDQ 435
+G D D I +WDLR + + T H + +++W + S G D+
Sbjct: 229 RVATATGSDNDPSILIWDLRN--ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT 286
Query: 436 IALWD 440
+ LW+
Sbjct: 287 VLLWN 291
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 287 VLATGDCKRNIHIWTPREAG--AWQVDQKPLV-GHTNSVEDLQWSPGEKRVLASCSVDLS 343
+LA G + IW E+ +++D ++ GH N V+ + WS + LA+CS D S
Sbjct: 72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS-NDGYYLATCSRDKS 130
Query: 344 IRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKG-S 402
+ IW+T + +++ H+ DV + W+ +E L+ S D + +W + +
Sbjct: 131 VWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW--KDYDDDWE 188
Query: 403 SVATFKHHTAPVTTVEWHPTESS-TFASGGADDQIALWDLAVERDSEIEQRE 453
VA H V + ++ TE SG D + +W D E +Q+E
Sbjct: 189 CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYM--GDDEDDQQE 238
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 71/159 (44%), Gaps = 6/159 (3%)
Query: 285 PGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSI 344
G+LATG R I + + + +D H ++ + W P +LA+ S D ++
Sbjct: 24 QGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTV 82
Query: 345 RIWDTRVINTKSC---MLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRF-KK 400
IW ++ +L + H ++V ++W+ + + D + +W+ ++
Sbjct: 83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE 142
Query: 401 GSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALW 439
++ + H+ V V WHP+E + AS DD + +W
Sbjct: 143 YECISVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIW 180
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 97/242 (40%), Gaps = 26/242 (10%)
Query: 169 LFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAED 228
L GH E + WS+ + LAT +++ IW E+G L H+ +
Sbjct: 100 LAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH 158
Query: 229 LQW--SDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPG 286
+ W S+ A + DD ++ + + + +GH ++ D+ TE G
Sbjct: 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV-------LNGHEGTVWSSDFDKTE-G 210
Query: 287 V--LATGDCKRNIHIWTPREAGAWQVDQKPLVG-------HTNSVEDLQWSPGEKRVLAS 337
V L +G + +W + G + DQ+ V H V ++ W G ++AS
Sbjct: 211 VFRLCSGSDDSTVRVW--KYMGDDEDDQQEWVCEAILPDVHKRQVYNVAW--GFNGLIAS 266
Query: 338 CSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRT--EPLIVSGGDDGCIHVWDL 395
D + +++ K ++NV+ W + ++ +GGDDG ++ W L
Sbjct: 267 VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326
Query: 396 RR 397
+
Sbjct: 327 EK 328
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 11/145 (7%)
Query: 312 QKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNV 371
+K + HTN + ++ + ++L + S D + +WD +L + H +DV
Sbjct: 147 KKSVAMHTNYLSACSFTNSDMQILTA-SGDGTCALWDVESGQ----LLQSFHGHGADVLC 201
Query: 372 ISW--NRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFAS 429
+ + T VSGG D VWD+R G V F+ H + V +V ++P+ FAS
Sbjct: 202 LDLAPSETGNTFVSGGCDKKAMVWDMR---SGQCVQAFETHESDVNSVRYYPS-GDAFAS 257
Query: 430 GGADDQIALWDLAVERDSEIEQREA 454
G D L+DL +R+ I +E+
Sbjct: 258 GSDDATCRLYDLRADREVAIYSKES 282
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 49/175 (28%)
Query: 312 QKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVIN-----TKSCMLTLPNA-- 364
++ L GH N V + W ++R+++S S D + +WD+ N T C + A
Sbjct: 57 RRTLKGHGNKVLCMDWCKDKRRIVSS-SQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYA 115
Query: 365 -------------------------------------HTSDVNVISWNRTEPLIVSGGDD 387
HT+ ++ S+ ++ I++ D
Sbjct: 116 PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGD 175
Query: 388 GCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTES-STFASGGADDQIALWDL 441
G +WD+ + G + +F H A V ++ P+E+ +TF SGG D + +WD+
Sbjct: 176 GTCALWDV---ESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM 227
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 15/141 (10%)
Query: 308 WQVDQKPLV----GHTNSVEDLQWSPGEK-RVLASCSVDLSIRIWDTRVINTKSCMLTLP 362
W V+ L+ GH V L +P E S D +WD R + C+
Sbjct: 181 WDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR---SGQCVQAFE 237
Query: 363 NAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTA--PVTTVEWH 420
H SDVN + + + SG DD ++DLR ++ VA + + ++V++
Sbjct: 238 T-HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE---VAIYSKESIIFGASSVDFS 293
Query: 421 PTESSTFASGGADDQIALWDL 441
+ FA G D I +WD+
Sbjct: 294 LSGRLLFA-GYNDYTINVWDV 313
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 14/94 (14%)
Query: 365 HTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHH--TAPVT---TVEW 419
H + V + W + + IVS DG + VWD S T K H T P T +
Sbjct: 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWD--------SFTTNKEHAVTMPCTWVMACAY 114
Query: 420 HPTESSTFASGGADDQIALWDLAVERDSEIEQRE 453
P+ A GG D++ +++ L +++ + ++
Sbjct: 115 APS-GCAIACGGLDNKCSVYPLTFDKNENMAAKK 147
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 12/132 (9%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPN-AHTSDVNV 371
+ VGHT V + +S + R + S S D +I++W+T + C T+ + +H+ V+
Sbjct: 122 RRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGV----CKYTVQDESHSEWVSC 176
Query: 372 ISW--NRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFAS 429
+ + N + P+IVS G D + VW+L K ++ HT + TV P + S AS
Sbjct: 177 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN---HIGHTGYLNTVTVSP-DGSLCAS 232
Query: 430 GGADDQIALWDL 441
GG D Q LWDL
Sbjct: 233 GGKDGQAMLWDL 244
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
Query: 268 FSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQW 327
F GH + ++ +SS +++ G + I +W + V + H+ V +++
Sbjct: 124 FVGHTKDVLSVAFSSDNRQIVS-GSRDKTIKLWNTLGVCKYTVQDES---HSEWVSCVRF 179
Query: 328 SPGEKR-VLASCSVDLSIRIWDTRVINTKSCMLTLPN-AHTSDVNVISWNRTEPLIVSGG 385
SP ++ SC D +++W N +C L + HT +N ++ + L SGG
Sbjct: 180 SPNSSNPIIVSCGWDKLVKVW-----NLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG 234
Query: 386 DDGCIHVWDLRRFK 399
DG +WDL K
Sbjct: 235 KDGQAMLWDLNEGK 248
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 315 LVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWD-TRVINTKSCMLTLPNAHTSDVNVIS 373
L GH V + +P ++ S S D +I +W TR H+ V+ +
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 374 WNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGAD 433
+ +SG DG + +WDL G++ F HT V +V + +++ SG D
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDL---TTGTTTRRFVGHTKDVLSVAF-SSDNRQIVSGSRD 149
Query: 434 DQIALWD 440
I LW+
Sbjct: 150 KTIKLWN 156
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 13/120 (10%)
Query: 309 QVDQK-PLV-GHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDT----RVINTKSCMLTLP 362
+VD+ PLV GHT V D+ W P V+AS S D ++ +W+ V+ + ++TL
Sbjct: 69 RVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL- 127
Query: 363 NAHTSDVNVISWNRT-EPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAP--VTTVEW 419
HT V +++W+ T + +++S G D I VWD+ G++V T P + +V+W
Sbjct: 128 EGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDV---GTGAAVLTLGPDVHPDTIYSVDW 184
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 361 LPNAHTSDVNVISWN-RTEPLIVSGGDDGCIHVWDLRR----FKKGSSVATFKHHTAPVT 415
L HT+ V I+W + +I SG +D + VW++ V T + HT V
Sbjct: 76 LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 416 TVEWHPTESSTFASGGADDQIALWDLA 442
V WHPT + S G D+ I +WD+
Sbjct: 136 IVAWHPTAQNVLLSAGXDNVILVWDVG 162
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 12/132 (9%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPN-AHTSDVNV 371
+ VGHT V + +S + R + S S D +I++W+T + C T+ + +H+ V+
Sbjct: 99 RRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGV----CKYTVQDESHSEWVSC 153
Query: 372 ISW--NRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFAS 429
+ + N + P+IVS G D + VW+L K ++ HT + TV P + S AS
Sbjct: 154 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN---HIGHTGYLNTVTVSP-DGSLCAS 209
Query: 430 GGADDQIALWDL 441
GG D Q LWDL
Sbjct: 210 GGKDGQAMLWDL 221
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
Query: 268 FSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQW 327
F GH + ++ +SS +++ G + I +W + V + H+ V +++
Sbjct: 101 FVGHTKDVLSVAFSSDNRQIVS-GSRDKTIKLWNTLGVCKYTVQDES---HSEWVSCVRF 156
Query: 328 SPGEKR-VLASCSVDLSIRIWDTRVINTKSCMLTLPN-AHTSDVNVISWNRTEPLIVSGG 385
SP ++ SC D +++W N +C L + HT +N ++ + L SGG
Sbjct: 157 SPNSSNPIIVSCGWDKLVKVW-----NLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG 211
Query: 386 DDGCIHVWDLRRFK 399
DG +WDL K
Sbjct: 212 KDGQAMLWDLNEGK 225
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 315 LVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWD-TRVINTKSCMLTLPNAHTSDVNVIS 373
L GH V + +P ++ S S D +I +W TR H+ V+ +
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 374 WNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGAD 433
+ +SG DG + +WDL G++ F HT V +V + +++ SG D
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDL---TTGTTTRRFVGHTKDVLSVAF-SSDNRQIVSGSRD 126
Query: 434 DQIALWD 440
I LW+
Sbjct: 127 KTIKLWN 133
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 318 HTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRT 377
H SVE +QW P + + S S D ++++WDT + T ++ ++ +S T
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVS---T 154
Query: 378 EPLIVSGGDDG-CIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQI 436
+ +V+ G G + + DL K GS + H + V W P A+ AD ++
Sbjct: 155 KHCLVAVGTRGPKVQLCDL---KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRV 211
Query: 437 ALWDL 441
LWD+
Sbjct: 212 KLWDV 216
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 315 LVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPN----------- 363
L GH + + WSP +LA+ S D +++WD R C++TL
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR--RASGCLITLDQHNGKKSQAVES 239
Query: 364 ---AHTSDVNVISWNRTEPLIVSGGDDGCIHVWD 394
AH VN + + +++ G D + +W+
Sbjct: 240 ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 381 IVSGGDDGCIHVWDLRRFKKGS-----SVATFKH-----HTAPVTTVEWHPTESSTFASG 430
++SGG DG I ++DL + S +V + H V TV+W+P ++ F S
Sbjct: 59 MLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118
Query: 431 GADDQIALWD 440
D + +WD
Sbjct: 119 SFDKTLKVWD 128
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 78/163 (47%), Gaps = 18/163 (11%)
Query: 355 KSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRR-FKKGSSVATFKHHTAP 413
K + T+ NA +S ++ +++ RT P I++ G + +WD R+ + S + + P
Sbjct: 180 KEAVRTIDNADSSTLHAVTFLRT-PEILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVP 238
Query: 414 VTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLFIHLGQKEI 473
+ V+ HP + A+GG D +++WD+ R+ +P LL H + E+
Sbjct: 239 LHCVDRHPNQQHVVATGGQDGMLSIWDV----------RQGT---MPVSLLKAH--EAEM 283
Query: 474 KELHWHPQLPGTIISTANSG-FNIFRTISDLPSQLLFIHLGQK 515
E+H+HP P + + + G + +D+P + H G +
Sbjct: 284 WEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEKSSLFHQGGR 326
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 64/158 (40%), Gaps = 12/158 (7%)
Query: 297 IHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKS 356
+ IW R+ G L G + + P ++ V+A+ D + IWD R +
Sbjct: 214 LKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVR---QGT 270
Query: 357 CMLTLPNAHTSDVNVISWNRTEPL-IVSGGDDGCIHVWDLRR--------FKKGSSVATF 407
++L AH +++ + ++ + P + + +DG + WD F +G +TF
Sbjct: 271 MPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTF 330
Query: 408 KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVER 445
H+ SS ++ A D+I + L R
Sbjct: 331 LSHSISNQANVHQSVISSWLSTDPAKDRIEITSLLPSR 368
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 13/120 (10%)
Query: 309 QVDQK-PLV-GHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDT----RVINTKSCMLTLP 362
+VD+ PLV GHT V D+ W P V+AS S D ++ +W+ V+ + ++TL
Sbjct: 69 RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL- 127
Query: 363 NAHTSDVNVISWNRT-EPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAP--VTTVEW 419
HT V +++W+ T + +++S G D I VWD+ G++V T P + +V+W
Sbjct: 128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV---GTGAAVLTLGPDVHPDTIYSVDW 184
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 364 AHTSDVNVISWN-RTEPLIVSGGDDGCIHVWDLRR----FKKGSSVATFKHHTAPVTTVE 418
HT+ V I+W + +I SG +D + VW++ V T + HT V V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 419 WHPTESSTFASGGADDQIALWDLA 442
WHPT + S G D+ I +WD+
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVG 162
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 264 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVE 323
P+ + GH + W T VL + C I +W GA + P V H +++
Sbjct: 123 PVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD-VGTGAAVLTLGPDV-HPDTIY 180
Query: 324 DLQWSPGEKRVLASCSVDLSIRIWDTR 350
+ WS + SC D +R+ + R
Sbjct: 181 SVDWSRDGALICTSCR-DKRVRVIEPR 206
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 20/167 (11%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWS-PGEKRVLASCSVDLSIRI 346
LAT + I I+ +D L GH V + W+ P +LASCS D + I
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLID--TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81
Query: 347 WDTRVINTKSCMLTLPNAHTSDVNVISWNRTE--PLIVSGGDDGCIHVWDLRRFKKGSSV 404
W N + + + H++ VN + W E PL++ DG + V + + S +
Sbjct: 82 WKEE--NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 139
Query: 405 ATFKHHTAPVTTVEWHPT------------ESSTFASGGADDQIALW 439
H V + W P ES F +GGAD+ + +W
Sbjct: 140 -IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 282 STEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGE--KRVLASCS 339
+ E TG + IW V + L GH++ V D+ WSP + LAS S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226
Query: 340 VDLSIRIW 347
D + IW
Sbjct: 227 QDRTCIIW 234
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGE--KRVLASCSVDRS 759
TG + IW V + L GH++ V D+ WSP + LAS S DR+
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
+ L GH++SV + +SP + + +AS S D ++++W N +L H+S VN +
Sbjct: 215 QTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVNGV 268
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGA 432
++ I S DD + +W+ + G + T H++ V V + P + T AS
Sbjct: 269 AFRPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASD 323
Query: 433 DDQIALWD 440
D + LW+
Sbjct: 324 DKTVKLWN 331
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
+ L GH++SV + +SP + + +AS S D ++++W N +L H+S V +
Sbjct: 420 QTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVRGV 473
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGA 432
+++ I S DD + +W+ + G + T H++ V V + P + T AS
Sbjct: 474 AFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASD 528
Query: 433 DDQIALWD 440
D + LW+
Sbjct: 529 DKTVKLWN 536
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
+ L GH++SV + +SP + + +AS S D ++++W N +L H+S V +
Sbjct: 51 QTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVRGV 104
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGA 432
+++ I S DD + +W+ + G + T H++ V V + P + T AS
Sbjct: 105 AFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASD 159
Query: 433 DDQIALWD 440
D + LW+
Sbjct: 160 DKTVKLWN 167
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
+ L GH++SV + +SP + + +AS S D ++++W N +L H+S V +
Sbjct: 338 QTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVRGV 391
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGA 432
+++ I S DD + +W+ + G + T H++ V V + P + T AS
Sbjct: 392 AFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVWGVAFSP-DDQTIASASD 446
Query: 433 DDQIALWD 440
D + LW+
Sbjct: 447 DKTVKLWN 454
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
+ L GH++SV + +SP + + +AS S D ++++W N +L H+S V +
Sbjct: 133 QTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVWGV 186
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGA 432
+++ I S DD + +W+ + G + T H++ V V + P + T AS
Sbjct: 187 AFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASD 241
Query: 433 DDQIALWD 440
D + LW+
Sbjct: 242 DKTVKLWN 249
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 11/130 (8%)
Query: 311 DQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVN 370
++ L H++SV + +SP + + +AS S D ++++W N +L H+S V
Sbjct: 8 ERNRLEAHSSSVRGVAFSP-DGQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVW 61
Query: 371 VISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASG 430
++++ I S DD + +W+ + G + T H++ V V + P + T AS
Sbjct: 62 GVAFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASA 116
Query: 431 GADDQIALWD 440
D + LW+
Sbjct: 117 SDDKTVKLWN 126
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 284 EPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLS 343
E LA G + +W ++ Q + + H+ V L W+ +L+S S
Sbjct: 169 EGNYLAVGTSSAEVQLWDVQQ----QKRLRNMTSHSARVGSLSWN---SYILSSGSRSGH 221
Query: 344 IRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKG-S 402
I D RV L+ H+ +V + W + SGG+D ++VW + G
Sbjct: 222 IHHHDVRVAEHHVATLS---GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 278
Query: 403 SVATFKHHTAPVTTVEWHPTESSTFASGG--ADDQIALWDL 441
+ TF H V V W P +S+ A+GG +D I +W++
Sbjct: 279 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 319
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 21/207 (10%)
Query: 265 LFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW--TPREAGAWQVDQKPLVGHTNSV 322
+ + SGH E + W+ + LA+G +++W P E G W V + H +V
Sbjct: 234 VATLSGHSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGG-W-VPLQTFTQHQGAV 290
Query: 323 EDLQWSPGEKRVLASC--SVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPL 380
+ + W P + VLA+ + D IRIW+ + + +C L+ +AH S V I W+
Sbjct: 291 KAVAWCPWQSNVLATGGGTSDRHIRIWN---VCSGAC-LSAVDAH-SQVCSILWSPHYKE 345
Query: 381 IVSGGD--DGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIAL 438
++SG + +W ++ + VA K HT+ V ++ P + +T AS AD+ + L
Sbjct: 346 LISGHGFAQNQLVIW---KYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRL 401
Query: 439 W---DLAVERDSEIEQREAELKDLPSQ 462
W +L R E E+ A L Q
Sbjct: 402 WRCFELDPARRREREKASAAKSSLIHQ 428
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 315 LVGHTNSVEDLQWS-PGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVIS 373
L GH V + W+ P +LASCS D + IW N + + + H++ VN +
Sbjct: 51 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE--NGRWSQIAVHAVHSASVNSVQ 108
Query: 374 WNRTE--PLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPT--------- 422
W E PL++ DG + V + + S + H V + W P
Sbjct: 109 WAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHN 167
Query: 423 ---ESSTFASGGADDQIALW 439
ES F +GGAD+ + +W
Sbjct: 168 GTKESRKFVTGGADNLVKIW 187
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 73/190 (38%), Gaps = 16/190 (8%)
Query: 171 SFSGHLTEGFAMDWSSTEPG-VLATGDCKRNIHIWTPREAGAW-QVDQKPLGGHTNSAED 228
+ +GH + +DW+ + G +LA+ + IW E G W Q+ + H+ S
Sbjct: 50 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW-KEENGRWSQIAVHAV--HSASVNS 106
Query: 229 LQWSDLKTA----LQTVDDPFQLAEHNKKRGKGPGIPTPPLF-----SFSGHLTEGFAMD 279
+QW+ + + + D + E + P I S++ E
Sbjct: 107 VQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 166
Query: 280 WSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGE--KRVLAS 337
+ E TG + IW V + L GH++ V D+ WSP + LAS
Sbjct: 167 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 226
Query: 338 CSVDLSIRIW 347
S D + IW
Sbjct: 227 VSQDRTCIIW 236
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGE--KRVLASCSVDRS 759
TG + IW V + L GH++ V D+ WSP + LAS S DR+
Sbjct: 175 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 232
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 284 EPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLS 343
E LA G + +W ++ Q + + H+ V L W+ +L+S S
Sbjct: 158 EGNYLAVGTSSAEVQLWDVQQ----QKRLRNMTSHSARVGSLSWN---SYILSSGSRSGH 210
Query: 344 IRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKG-S 402
I D RV L+ H+ +V + W + SGG+D ++VW + G
Sbjct: 211 IHHHDVRVAEHHVATLS---GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 267
Query: 403 SVATFKHHTAPVTTVEWHPTESSTFASGG--ADDQIALWDL 441
+ TF H V V W P +S+ A+GG +D I +W++
Sbjct: 268 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 121/284 (42%), Gaps = 33/284 (11%)
Query: 188 EPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQWSDLKTALQTVDDPFQL 247
E LA G + +W ++ Q + + H+ L W+ L + +
Sbjct: 158 EGNYLAVGTSSAEVQLWDVQQ----QKRLRNMTSHSARVGSLSWNSY--ILSSGSRSGHI 211
Query: 248 AEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW--TPREA 305
H+ + + + + SGH E + W+ + LA+G +++W P E
Sbjct: 212 HHHDVR------VAEHHVATLSGHSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEG 264
Query: 306 GAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASC--SVDLSIRIWDTRVINTKSCMLTLPN 363
G W V + H +V+ + W P + VLA+ + D IRIW+ + + +C L+ +
Sbjct: 265 G-W-VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN---VCSGAC-LSAVD 318
Query: 364 AHTSDVNVISWNRTEPLIVSGGD--DGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHP 421
AH S V I W+ ++SG + +W ++ + VA K HT+ V ++ P
Sbjct: 319 AH-SQVCSILWSPHYKELISGHGFAQNQLVIW---KYPTMAKVAELKGHTSRVLSLTMSP 374
Query: 422 TESSTFASGGADDQIALW---DLAVERDSEIEQREAELKDLPSQ 462
+ +T AS AD+ + LW +L R E E+ A L Q
Sbjct: 375 -DGATVASAAADETLRLWRCFELDPARRREREKASAAKSSLIHQ 417
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 315 LVGHTNSVEDLQWS-PGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVIS 373
L GH V + W+ P +LASCS D + IW N + + + H++ VN +
Sbjct: 49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE--NGRWSQIAVHAVHSASVNSVQ 106
Query: 374 WNRTE--PLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPT--------- 422
W E PL++ DG + V + + S + H V + W P
Sbjct: 107 WAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHN 165
Query: 423 ---ESSTFASGGADDQIALW 439
ES F +GGAD+ + +W
Sbjct: 166 GTKESRKFVTGGADNLVKIW 185
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 73/190 (38%), Gaps = 16/190 (8%)
Query: 171 SFSGHLTEGFAMDWSSTEPG-VLATGDCKRNIHIWTPREAGAW-QVDQKPLGGHTNSAED 228
+ +GH + +DW+ + G +LA+ + IW E G W Q+ + H+ S
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW-KEENGRWSQIAVHAV--HSASVNS 104
Query: 229 LQWSDLKTA----LQTVDDPFQLAEHNKKRGKGPGIPTPPLF-----SFSGHLTEGFAMD 279
+QW+ + + + D + E + P I S++ E
Sbjct: 105 VQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164
Query: 280 WSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGE--KRVLAS 337
+ E TG + IW V + L GH++ V D+ WSP + LAS
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224
Query: 338 CSVDLSIRIW 347
S D + IW
Sbjct: 225 VSQDRTCIIW 234
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGE--KRVLASCSVDRS 759
TG + IW V + L GH++ V D+ WSP + LAS S DR+
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 12/136 (8%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
+ L GH+ V D+ S S S D S+R+W+ + C HT DV +
Sbjct: 61 RRLEGHSAFVSDVALS-NNGNFAVSASWDHSLRLWN---LQNGQCQYKFL-GHTKDVLSV 115
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKH--HTAPVTTVEWHPT-ESSTFAS 429
+++ IVSGG D + VW++ KG + T HT V+ V + P+ ++ S
Sbjct: 116 AFSPDNRQIVSGGRDNALRVWNV----KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVS 171
Query: 430 GGADDQIALWDLAVER 445
GG D+ + +WDLA R
Sbjct: 172 GGWDNLVKVWDLATGR 187
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 24/158 (15%)
Query: 317 GHTNSVEDLQWSPG-EKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWN 375
HT+ V +++SP + V+ S D +++WD ++T HT+ V ++ +
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDL----ATGRLVTDLKGHTNYVTSVTVS 205
Query: 376 RTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQ 435
L S DG +WDL + + S +A AP+ + + P + +
Sbjct: 206 PDGSLCASSDKDGVARLWDLTKGEALSEMAA----GAPINQICFSPNR--YWMCAATEKG 259
Query: 436 IALWDLAVERDSEIEQREAELKDLPSQLLFIHLGQKEI 473
I ++DL E KD+ +L H G K+I
Sbjct: 260 IRIFDL-------------ENKDIIVELAPEHQGSKKI 284
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 21/188 (11%)
Query: 264 PLFSFSGHLTEGFAMDWSSTEPGVLA-TGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSV 322
P+ SF GH D + T G A + + + +W +Q VGH + V
Sbjct: 57 PVRSFKGH--SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ----RFVGHKSDV 110
Query: 323 EDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLP--NAHTSDVNVISWNRTEP- 379
+ ++ S S D +I++W + C+ TL N S V V+ + +
Sbjct: 111 MSVDIDKKASMII-SGSRDKTIKVWTIK----GQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 380 --LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIA 437
I+S G+D + W+L +F+ A F H + + T+ P + + AS G D +I
Sbjct: 166 SVTIISAGNDKMVKAWNLNQFQIE---ADFIGHNSNINTLTASP-DGTLIASAGKDGEIM 221
Query: 438 LWDLAVER 445
LW+LA ++
Sbjct: 222 LWNLAAKK 229
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 21/188 (11%)
Query: 264 PLFSFSGHLTEGFAMDWSSTEPGVLA-TGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSV 322
P+ SF GH D + T G A + + + +W +Q VGH + V
Sbjct: 57 PVRSFKGH--SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ----RFVGHKSDV 110
Query: 323 EDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTL--PNAHTSDVNVISWNRTEP- 379
+ ++ S S D +I++W + C+ TL N S V V+ + +
Sbjct: 111 XSVDIDKKASXII-SGSRDKTIKVWTIK----GQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 380 --LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIA 437
I+S G+D + W+L +F+ A F H + + T+ P + + AS G D +I
Sbjct: 166 SVTIISAGNDKXVKAWNLNQFQIE---ADFIGHNSNINTLTASP-DGTLIASAGKDGEIX 221
Query: 438 LWDLAVER 445
LW+LA ++
Sbjct: 222 LWNLAAKK 229
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 21/188 (11%)
Query: 264 PLFSFSGHLTEGFAMDWSSTEPGVLA-TGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSV 322
P+ SF GH D + T G A + + + +W +Q VGH + V
Sbjct: 57 PVRSFKGH--SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ----RFVGHKSDV 110
Query: 323 EDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLP--NAHTSDVNVISWNRTEP- 379
+ ++ S S D +I++W + C+ TL N S V V+ + +
Sbjct: 111 MSVDIDKKASMII-SGSRDKTIKVWTIK----GQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 380 --LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIA 437
I+S G+D + W+L +F+ A F H + + T+ P + + AS G D +I
Sbjct: 166 SVTIISAGNDKMVKAWNLNQFQIE---ADFIGHNSNINTLTASP-DGTLIASAGKDGEIM 221
Query: 438 LWDLAVER 445
LW+LA ++
Sbjct: 222 LWNLAAKK 229
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 21/188 (11%)
Query: 264 PLFSFSGHLTEGFAMDWSSTEPGVLA-TGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSV 322
P+ SF GH D + T G A + + + +W +Q VGH + V
Sbjct: 51 PVRSFKGH--SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ----RFVGHKSDV 104
Query: 323 EDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLP--NAHTSDVNVISWNRTEP- 379
+ ++ S S D +I++W + C+ TL N S V V+ + +
Sbjct: 105 MSVDIDKKASMII-SGSRDKTIKVWTIK----GQCLATLLGHNDWVSQVRVVPNEKADDD 159
Query: 380 --LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIA 437
I+S G+D + W+L +F+ A F H + + T+ P + + AS G D +I
Sbjct: 160 SVTIISAGNDKMVKAWNLNQFQIE---ADFIGHNSNINTLTASP-DGTLIASAGKDGEIM 215
Query: 438 LWDLAVER 445
LW+LA ++
Sbjct: 216 LWNLAAKK 223
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 15/167 (8%)
Query: 281 SSTEPGVLATGDCKRNIHIWT-PREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCS 339
S+ +P +L + + + W + + V + GH++ V+D + L S S
Sbjct: 20 SAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYAL-SAS 78
Query: 340 VDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFK 399
D ++R+WD T + H SDV + ++ +I+SG D I VW +
Sbjct: 79 WDKTLRLWDVATGETYQRFV----GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI---- 130
Query: 400 KGSSVATFKHHTAPVTTVEWHPTE-----SSTFASGGADDQIALWDL 441
KG +AT H V+ V P E S T S G D + W+L
Sbjct: 131 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 177
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 21/188 (11%)
Query: 264 PLFSFSGHLTEGFAMDWSSTEPGVLA-TGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSV 322
P+ SF GH D + T G A + + + +W +Q VGH + V
Sbjct: 57 PVRSFKGH--SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ----RFVGHKSDV 110
Query: 323 EDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLP--NAHTSDVNVISWNRTEP- 379
+ ++ S S D +I++W + C+ TL N S V V+ + +
Sbjct: 111 MSVDIDKKASMII-SGSRDKTIKVWTIK----GQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 380 --LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIA 437
I+S G+D + W+L +F+ A F H + + T+ P + + AS G D +I
Sbjct: 166 SVTIISAGNDKMVKAWNLNQFQIE---ADFIGHNSNINTLTASP-DGTLIASAGKDGEIM 221
Query: 438 LWDLAVER 445
LW+LA ++
Sbjct: 222 LWNLAAKK 229
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 315 LVGHTNSVEDLQWS-PGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVIS 373
L GH V + W+ P +LASCS D + IW N + + + H++ VN +
Sbjct: 49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE--NGRWSQIAVHAVHSASVNSVQ 106
Query: 374 WNRTE--PLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPT--------- 422
W E P+++ DG + V + + S + H V + W P
Sbjct: 107 WAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHN 165
Query: 423 ---ESSTFASGGADDQIALW 439
ES F +GGAD+ + +W
Sbjct: 166 GTKESRKFVTGGADNLVKIW 185
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 16/190 (8%)
Query: 171 SFSGHLTEGFAMDWSSTEPG-VLATGDCKRNIHIWTPREAGAW-QVDQKPLGGHTNSAED 228
+ +GH + +DW+ + G +LA+ + IW E G W Q+ + H+ S
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW-KEENGRWSQIAVHAV--HSASVNS 104
Query: 229 LQWSDLKTA----LQTVDDPFQLAEHNKKRGKGPGIPTPPLF-----SFSGHLTEGFAMD 279
+QW+ + + + D + E + P I S++ E
Sbjct: 105 VQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164
Query: 280 WSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGE--KRVLAS 337
+ E TG + IW V + L GH++ V D+ WSP + +AS
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224
Query: 338 CSVDLSIRIW 347
S D + IW
Sbjct: 225 VSQDRTCIIW 234
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 21/188 (11%)
Query: 264 PLFSFSGHLTEGFAMDWSSTEPGVLA-TGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSV 322
P+ SF GH D + T G A + + + +W +Q VGH + V
Sbjct: 57 PVRSFKGH--SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ----RFVGHKSDV 110
Query: 323 EDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLP--NAHTSDVNVISWNRTEP- 379
+ ++ S S D +I++W + C+ TL N S V V+ + +
Sbjct: 111 MSVDIDKKASMII-SGSRDKTIKVWTIK----GQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 380 --LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIA 437
I+S G+D + W+L +F+ A F H + + T+ P + + AS G D +I
Sbjct: 166 SVTIISAGNDKMVKAWNLNQFQIE---ADFIGHNSNINTLTASP-DGTLIASAGKDGEIM 221
Query: 438 LWDLAVER 445
LW+LA ++
Sbjct: 222 LWNLAAKK 229
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 284 EPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLS 343
E LA G + +W ++ Q + + H+ V L W+ +L+S S
Sbjct: 78 EGNYLAVGTSSAEVQLWDVQQ----QKRLRNMTSHSARVGSLSWN---SYILSSGSRSGH 130
Query: 344 IRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKG-S 402
I D RV L+ H+ +V + W + SGG+D ++VW + G
Sbjct: 131 IHHHDVRVAEHHVATLS---GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 187
Query: 403 SVATFKHHTAPVTTVEWHPTESSTFASGG--ADDQIALWDL 441
+ TF H V V W P +S+ A+GG +D I +W++
Sbjct: 188 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 112/258 (43%), Gaps = 30/258 (11%)
Query: 188 EPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQWSDLKTALQTVDDPFQL 247
E LA G + +W ++ Q + + H+ L W+ L + +
Sbjct: 78 EGNYLAVGTSSAEVQLWDVQQ----QKRLRNMTSHSARVGSLSWNSY--ILSSGSRSGHI 131
Query: 248 AEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW--TPREA 305
H+ + + + + SGH E + W+ + LA+G +++W P E
Sbjct: 132 HHHDVR------VAEHHVATLSGHSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEG 184
Query: 306 GAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASC--SVDLSIRIWDTRVINTKSCMLTLPN 363
G W V + H +V+ + W P + VLA+ + D IRIW+ + + +C L+ +
Sbjct: 185 G-W-VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN---VCSGAC-LSAVD 238
Query: 364 AHTSDVNVISWNRTEPLIVSGGD--DGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHP 421
AH S V I W+ ++SG + +W ++ + VA K HT+ V ++ P
Sbjct: 239 AH-SQVCSILWSPHYKELISGHGFAQNQLVIW---KYPTMAKVAELKGHTSRVLSLTMSP 294
Query: 422 TESSTFASGGADDQIALW 439
+ +T AS AD+ + LW
Sbjct: 295 -DGATVASAAADETLRLW 311
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/296 (21%), Positives = 115/296 (38%), Gaps = 44/296 (14%)
Query: 164 IPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHT 223
I L SGH +A+ ++ G+L +G R + +W ++ V + GH
Sbjct: 150 INKKFLLQLSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIKKGCCTHVFE----GHN 203
Query: 224 NSAEDLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIP-------------TP---PLFS 267
++ L + K V H K K +P TP P F
Sbjct: 204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263
Query: 268 --FSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDL 325
GH+ ++ S ++ +G + +W + + L GHT+ +
Sbjct: 264 GVLRGHMA---SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYI----LSGHTDRIYST 316
Query: 326 QWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGG 385
+ KR + S S+D +IRIWD + M TL HT+ V ++ ++ +VS
Sbjct: 317 IYDHERKRCI-SASMDTTIRIWD---LENGELMYTLQ-GHTALVGLLRL--SDKFLVSAA 369
Query: 386 DDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
DG I WD + + S HHT ++ +++ G+++Q +++L
Sbjct: 370 ADGSIRGWDANDYSRKFSY----HHTNLSAITTFYVSDN--ILVSGSENQFNIYNL 419
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Query: 312 QKPLVGHTNSVED-LQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVN 370
+ L GH SV LQ+ E + + + D IR++D+ IN K L + H V
Sbjct: 114 RTTLRGHMTSVITCLQF---EDNYVITGADDKMIRVYDS--INKK--FLLQLSGHDGGVW 166
Query: 371 VISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTF-AS 429
+ + ++VSG D + VWD+ KKG F+ H + V ++ ++ + +
Sbjct: 167 ALKYAHG-GILVSGSTDRTVRVWDI---KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 222
Query: 430 GGADDQIALWDLAVE 444
G D+ + +W L E
Sbjct: 223 GSRDNTLHVWKLPKE 237
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 121/300 (40%), Gaps = 49/300 (16%)
Query: 176 LTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREA---GAWQVDQKPLGGHTNSAEDLQWS 232
+ GF+ + P VL +G + + IW E G + + K L GH + DL S
Sbjct: 27 IVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALS 85
Query: 233 DLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFS-FSGHLTEGFAMDWSSTEPGVLATG 291
++ F ++ K + + T + F GH +E +++ +S +L+ G
Sbjct: 86 Q--------ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAG 137
Query: 292 DCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRV---------LASCSVDL 342
+R I +W G + H++ V +++SP K AS D
Sbjct: 138 -AEREIKLWNI--LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG 194
Query: 343 SIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDL------- 395
+++W NT + AH S+VN +S + I +GG D + +WD+
Sbjct: 195 RLKVW-----NTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ 249
Query: 396 RRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQREAE 455
R F GS++ + A ++W + G D + +++L + + + EAE
Sbjct: 250 REFDAGSTI----NQIAFNPKLQW--------VAVGTDQGVKIFNLMTQSKAPVCTIEAE 297
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 322 VEDLQWSPGEKRVLASCSVDLSIRIWD----TRVINTKSCMLTLPNAHTSDVNVISWNRT 377
V DL W GE+ +L + S ++ +W+ +I +K C H V+ +S +
Sbjct: 85 VADLTWV-GERGILVA-SDSGAVELWELDENETLIVSKFCKYE----HDDIVSTVSVLSS 138
Query: 378 EPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIA 437
VSG D CI VWDL + +++++ H A VT V P + S F S D++I
Sbjct: 139 GTQAVSGSKDICIKVWDL---AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRIL 195
Query: 438 LWD 440
LWD
Sbjct: 196 LWD 198
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 6/135 (4%)
Query: 307 AWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHT 366
A QV H V + SP + V SCS D I +WDTR S + +
Sbjct: 157 AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYL 216
Query: 367 SDVNVISWN-RTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESS 425
++W+ + + V G ++G + + D K S V + H+ VT + + P
Sbjct: 217 P--TSLAWHPQQSEVFVFGDENGTVSLVDT---KSTSCVLSSAVHSQCVTGLVFSPHSVP 271
Query: 426 TFASGGADDQIALWD 440
AS D +A+ D
Sbjct: 272 FLASLSEDCSLAVLD 286
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 18/140 (12%)
Query: 315 LVGHTNSVEDLQWS-PGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVIS 373
L GH V + W+ P +LASCS D + IW N + + + H++ VN +
Sbjct: 49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEE--NGRWSQIAVHAVHSASVNSVQ 106
Query: 374 WNRTE--PLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPT--------- 422
W E P ++ DG + V + + S + H V + W P
Sbjct: 107 WAPHEYGPXLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHN 165
Query: 423 ---ESSTFASGGADDQIALW 439
ES F +GGAD+ + +W
Sbjct: 166 GTKESRKFVTGGADNLVKIW 185
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 101/239 (42%), Gaps = 24/239 (10%)
Query: 169 LFSFSGHLTEGFAMDWSSTEPG-VLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAE 227
+ GH + + W+ G +LA+ R + IW E G W+ + GH +S
Sbjct: 50 IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR-EENGTWEKSHEH-AGHDSSVN 107
Query: 228 DLQWS----DLKTALQTVDDPFQLAEHN-------KKRGKGPGIPTPPLFSFSGHLTEGF 276
+ W+ L A + D L + KK I + S++ + G
Sbjct: 108 SVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAV-SWAPAVVPGS 166
Query: 277 AMDW-SSTEPGVL---ATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPG-- 330
+D S +P + A+G C I +W E G W+ +QK L H++ V D+ W+P
Sbjct: 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK-LEAHSDWVRDVAWAPSIG 225
Query: 331 -EKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLI-VSGGDD 387
+ASCS D + IW ++ + L + V +SW+ T ++ VSGGD+
Sbjct: 226 LPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN 284
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 102/259 (39%), Gaps = 42/259 (16%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWS-PGEKRVLASCSVDLSIRI 346
LAT R++ I+ R G Q+ L GH V + W+ P +LASCS D + I
Sbjct: 28 LATCSSDRSVKIFDVRNGG--QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85
Query: 347 WDTRVINTKSCMLTLPNAHTSDVNVISW--NRTEPLIVSGGDDGCIHV--------WDLR 396
W R N H S VN + W + ++ G DG I + W+++
Sbjct: 86 W--REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK 143
Query: 397 RFKK----GSSVATFKHHTAPVTTVEWHPTESS-----TFASGGADDQIALWDLAVERDS 447
+ G + ++ P + ++ HP+ FASGG D+ I LW
Sbjct: 144 KINNAHTIGCNAVSWAPAVVPGSLID-HPSGQKPNYIKRFASGGCDNLIKLWK------- 195
Query: 448 EIEQREAELKDLPSQLLFIHLGQKEIKELHWHPQL---PGTIISTANSGFNIFRTISDLP 504
E+ + + K+ Q L H ++++ W P + TI S + G T D
Sbjct: 196 --EEEDGQWKE--EQKLEAH--SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDAS 249
Query: 505 SQLLFIHLGQKEIKELHWH 523
S L K ++ WH
Sbjct: 250 SNTWSPKLLHK-FNDVVWH 267
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 697 YTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPG---EKRVLAS 753
Y RF A+G C I +W E G W+ +QK L H++ V D+ W+P +AS
Sbjct: 178 YIKRF---ASGGCDNLIKLWKEEEDGQWKEEQK-LEAHSDWVRDVAWAPSIGLPTSTIAS 233
Query: 754 CSVD 757
CS D
Sbjct: 234 CSQD 237
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 22/100 (22%)
Query: 672 LATGDCKRNIHIWTPREAG-----------------AWSVYLYTNRFGVLATGDCKRNIH 714
LAT R++ I+ R G AW+ +Y N +LA+ R +
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGN---ILASCSYDRKVI 84
Query: 715 IWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASC 754
IW E G W+ + GH +SV + W+P + ++ +C
Sbjct: 85 IWR-EENGTWEKSHEH-AGHDSSVNSVCWAPHDYGLILAC 122
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 17/129 (13%)
Query: 313 KPLVGHTNSVEDLQWSPGEK-RVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNV 371
+ LVGHT V WS + ++ S S D ++++W+ T C+ TL HTS V
Sbjct: 153 RTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNA---ETGECIHTLY-GHTSTVRC 204
Query: 372 ISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGG 431
+ + E +VSG D + VWD+ + G + H A V V++ + SG
Sbjct: 205 MHLH--EKRVVSGSRDATLRVWDI---ETGQCLHVLMGHVAAVRCVQY---DGRRVVSGA 256
Query: 432 ADDQIALWD 440
D + +WD
Sbjct: 257 YDFMVKVWD 265
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 265 LFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVED 324
L + GH +++ + + +G +I +W L GH +
Sbjct: 272 LHTLQGHTNRVYSLQFDGIH---VVSGSLDTSIRVWDVETGNCIH----TLTGHQSLTSG 324
Query: 325 LQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTL--PNAHTSDVNVISWNRTEPLIV 382
++ + +L S + D +++IWD I T C+ TL PN H S V + +N+ ++
Sbjct: 325 MEL---KDNILVSGNADSTVKIWD---IKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVI 376
Query: 383 SGGDDGCIHVWDLR 396
+ DDG + +WDL+
Sbjct: 377 TSSDDGTVKLWDLK 390
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 69/161 (42%), Gaps = 24/161 (14%)
Query: 287 VLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRI 346
V A+GD R I +W + L GH + LQ+ R++ S S D +IR+
Sbjct: 270 VSASGD--RTIKVWNTSTCEF----VRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRL 320
Query: 347 WDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLR-----RFKKG 401
WD I +C+ L H V I ++ IVSG DG I VWDL R G
Sbjct: 321 WD---IECGACLRVL-EGHEELVRCIRFDNKR--IVSGAYDGKIKVWDLVAALDPRAPAG 374
Query: 402 S-SVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
+ + T H+ V +++ + S DD I +WD
Sbjct: 375 TLCLRTLVEHSGRVFRLQFDEFQ---IVSSSHDDTILIWDF 412
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 312 QKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNV 371
++ L GHT SV LQ+ ++RV+ + S D ++R+WD +NT + TL + H V
Sbjct: 166 KRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWD---VNTGEMLNTLIH-HCEAVLH 218
Query: 372 ISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGG 431
+ +N ++V+ D I VWD+ + H A V V++ + S
Sbjct: 219 LRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSAS 273
Query: 432 ADDQIALWD 440
D I +W+
Sbjct: 274 GDRTIKVWN 282
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 112/293 (38%), Gaps = 38/293 (12%)
Query: 164 IPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHT 223
I L SGH +A+ ++ G+L +G R + +W ++ V GH
Sbjct: 150 INKKFLLQLSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIKKGCCTHV----FEGHN 203
Query: 224 NSAEDLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPT-------PPLFS-------FS 269
++ L + K V H K K +P P +F F
Sbjct: 204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263
Query: 270 GHLTEGFAMDWSSTEPG-VLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWS 328
G L A + + G ++ +G + +W + + L GHT+ + +
Sbjct: 264 GVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYI----LSGHTDRIYSTIYD 319
Query: 329 PGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDG 388
KR + S S D +IRIWD + TL HT+ V ++ ++ +VS DG
Sbjct: 320 HERKRCI-SASXDTTIRIWD---LENGELXYTLQ-GHTALVGLLRL--SDKFLVSAAADG 372
Query: 389 CIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
I WD + + S HHT ++ +++ G+++Q +++L
Sbjct: 373 SIRGWDANDYSRKFSY----HHTNLSAITTFYVSDN--ILVSGSENQFNIYNL 419
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Query: 312 QKPLVGHTNSVED-LQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVN 370
+ L GH SV LQ+ E + + + D IR++D+ IN K L + H V
Sbjct: 114 RTTLRGHXTSVITCLQF---EDNYVITGADDKXIRVYDS--INKK--FLLQLSGHDGGVW 166
Query: 371 VISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTF-AS 429
+ + ++VSG D + VWD+ KKG F+ H + V ++ ++ + +
Sbjct: 167 ALKYAHG-GILVSGSTDRTVRVWDI---KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 222
Query: 430 GGADDQIALWDLAVE 444
G D+ + +W L E
Sbjct: 223 GSRDNTLHVWKLPKE 237
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 5/52 (9%)
Query: 308 WQVDQKP----LVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTK 355
W ++QK + GHTNSV ++SP ++ +LASCS D ++R+WD R N +
Sbjct: 735 WDLNQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANER 785
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 18/120 (15%)
Query: 335 LASCSVDLSIRIWDT---RVINTKSCMLTLPNAHTSDVNVISW-NRTEPLIV-SGGDDGC 389
+A+CS D ++IWD+ ++++T + H+ VN + N++ L++ +G +D
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTY-------DEHSEQVNCCHFTNKSNHLLLATGSNDFF 731
Query: 390 IHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDL--AVERDS 447
+ +WDL + T HT V + P + AS AD + LWD+ A ER S
Sbjct: 732 LKLWDL---NQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKS 787
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 10/141 (7%)
Query: 265 LFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVED 324
L H E +SS + +AT + + IW + H+ V
Sbjct: 657 LLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYDE----HSEQVNC 711
Query: 325 LQWSPGEKRVL-ASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVS 383
++ +L A+ S D +++WD +N K C T+ HT+ VN ++ + L+ S
Sbjct: 712 CHFTNKSNHLLLATGSNDFFLKLWD---LNQKECRNTMF-GHTNSVNHCRFSPDDELLAS 767
Query: 384 GGDDGCIHVWDLRRFKKGSSV 404
DG + +WD+R + S+
Sbjct: 768 CSADGTLRLWDVRSANERKSI 788
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 18/126 (14%)
Query: 649 LFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWSVY----------LYT 698
L H E +SS + +AT + + IW Y +T
Sbjct: 657 LLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT 715
Query: 699 NRFG--VLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSV 756
N+ +LATG + +W + + + GHTNSV ++SP ++ +LASCS
Sbjct: 716 NKSNHLLLATGSNDFFLKLWDLNQKEC----RNTMFGHTNSVNHCRFSPDDE-LLASCSA 770
Query: 757 DRSNRI 762
D + R+
Sbjct: 771 DGTLRL 776
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 5/52 (9%)
Query: 308 WQVDQKP----LVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTK 355
W ++QK + GHTNSV ++SP ++ +LASCS D ++R+WD R N +
Sbjct: 728 WDLNQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANER 778
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 18/120 (15%)
Query: 335 LASCSVDLSIRIWDT---RVINTKSCMLTLPNAHTSDVNVISW-NRTEPLIV-SGGDDGC 389
+A+CS D ++IWD+ ++++T + H+ VN + N++ L++ +G +D
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTY-------DEHSEQVNCCHFTNKSNHLLLATGSNDFF 724
Query: 390 IHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDL--AVERDS 447
+ +WDL + T HT V + P + AS AD + LWD+ A ER S
Sbjct: 725 LKLWDL---NQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKS 780
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 10/141 (7%)
Query: 265 LFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVED 324
L H E +SS + +AT + + IW + H+ V
Sbjct: 650 LLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYDE----HSEQVNC 704
Query: 325 LQWSPGEKRVL-ASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVS 383
++ +L A+ S D +++WD +N K C T+ HT+ VN ++ + L+ S
Sbjct: 705 CHFTNKSNHLLLATGSNDFFLKLWD---LNQKECRNTMF-GHTNSVNHCRFSPDDELLAS 760
Query: 384 GGDDGCIHVWDLRRFKKGSSV 404
DG + +WD+R + S+
Sbjct: 761 CSADGTLRLWDVRSANERKSI 781
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 18/126 (14%)
Query: 649 LFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWSVY----------LYT 698
L H E +SS + +AT + + IW Y +T
Sbjct: 650 LLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT 708
Query: 699 NRFG--VLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSV 756
N+ +LATG + +W + + + GHTNSV ++SP ++ +LASCS
Sbjct: 709 NKSNHLLLATGSNDFFLKLWDLNQKEC----RNTMFGHTNSVNHCRFSPDDE-LLASCSA 763
Query: 757 DRSNRI 762
D + R+
Sbjct: 764 DGTLRL 769
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 119/271 (43%), Gaps = 27/271 (9%)
Query: 191 VLATGDCKRNIHIWT-PREAGAWQVDQKPLGGHTNSAEDLQWS-DLKTALQ-TVDDPFQL 247
++ + ++I +W ++ A+ V Q+ L GH++ ED+ S D + AL + D +L
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456
Query: 248 AEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGA 307
+ G+ T F GH + ++ +S +++ R I +W
Sbjct: 457 WDL------AAGVSTR---RFVGHTKDVLSVAFSLDNRQIVSASR-DRTIKLWNTLGECK 506
Query: 308 WQVDQKPLVGHTNSVEDLQWSPGEKR-VLASCSVDLSIRIWDTRVINTKSCMLTLPNAHT 366
+ + + GH + V +++SP + + S S D ++++W+ +S + HT
Sbjct: 507 YTISEGG-EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA----GHT 561
Query: 367 SDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESST 426
V+ ++ + L SGG DG + +WDL KK S+ + + + + P
Sbjct: 562 GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL----EANSVIHALCFSPNR--Y 615
Query: 427 FASGGADDQIALWDLAVERDSEIEQREAELK 457
+ + I +WDL E S +E + +LK
Sbjct: 616 WLCAATEHGIKIWDL--ESKSIVEDLKVDLK 644
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 281 SSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSV 340
+S+ +LATG + +W + + + GHTNSV ++SP +K +LASCS
Sbjct: 715 NSSHHLLLATGSSDCFLKLWDLNQKEC----RNTMFGHTNSVNHCRFSPDDK-LLASCSA 769
Query: 341 DLSIRIWDT------RVINTKSCMLTLPNAHTSDVNVI 372
D ++++WD + IN K L L + D+ VI
Sbjct: 770 DGTLKLWDATSANERKSINVKQFFLNLEDPQ-EDMEVI 806
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 331 EKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISW-NRTEPLIVSGGDDGC 389
+ R +A+CSVD ++IW++ ++ + H+ VN + N + L+++ G C
Sbjct: 674 DDRFIATCSVDKKVKIWNSMTGE----LVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDC 729
Query: 390 -IHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDL--AVERD 446
+ +WDL + T HT V + P + AS AD + LWD A ER
Sbjct: 730 FLKLWDL---NQKECRNTMFGHTNSVNHCRFSP-DDKLLASCSADGTLKLWDATSANERK 785
Query: 447 S 447
S
Sbjct: 786 S 786
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 17/104 (16%)
Query: 666 STEPGVLATGDCKRNIHIWTPREAGAWSVY----------LYTN--RFGVLATGDCKRNI 713
ST+ +AT + + IW Y +TN +LATG +
Sbjct: 672 STDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFL 731
Query: 714 HIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVD 757
+W + + + GHTNSV ++SP +K +LASCS D
Sbjct: 732 KLWDLNQKEC----RNTMFGHTNSVNHCRFSPDDK-LLASCSAD 770
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 10/153 (6%)
Query: 289 ATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWD 348
A+GD N+ IW + P+ + V+D+ W KR+ A + R
Sbjct: 75 ASGDVHGNVRIWDTTQTTHILKTTIPVF--SGPVKDISWDSESKRIAAVG--EGRERFGH 130
Query: 349 TRVINTKSCMLTLPNAHTSDVNVISWNRTEPL-IVSGGDDGCIHVWDLRRFKKGSSVATF 407
+ +T + L +N + + + P I+SG DD + +++ FK S TF
Sbjct: 131 VFLFDTGTSNGNL-TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS---TF 186
Query: 408 KHHTAPVTTVEWHPTESSTFASGGADDQIALWD 440
HT V +V ++P + S FAS G D I L++
Sbjct: 187 GEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYN 218
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 9/161 (5%)
Query: 282 STEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVD 341
S + +A G +H++ + +GA + K +V H + + +S ++A+ D
Sbjct: 457 SNDKQFVAVGGQDSKVHVY--KLSGASVSEVKTIV-HPAEITSVAFSNNGAFLVAT---D 510
Query: 342 LSIRIWDTRVINTKSCMLTLP-NAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKK 400
S ++ V N T HT+ V +SW+ + +G D + VW++ +
Sbjct: 511 QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570
Query: 401 GSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
+ H + V +V W +T S G D I W++
Sbjct: 571 HPIIIKGAHAMSSVNSVIW--LNETTIVSAGQDSNIKFWNV 609
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 304 EAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCM 358
+ G ++ D V H+ SV L WSP ++ AS S D +I+IW+ + + +
Sbjct: 224 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI-ASASADKTIKIWNVATLKVEKTI 277
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 25/188 (13%)
Query: 268 FSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVED--- 324
GH + +++D+ + L +G R + IW R Q L T S+ED
Sbjct: 161 LQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLRTG------QCSL---TLSIEDGVT 210
Query: 325 -LQWSPGEKRVLASCSVDLSIRIWDTR---VINTKSCMLTLPNAHTSDVNVISWNRTEPL 380
+ SPG+ + +A+ S+D ++R+WD+ ++ H V + + R
Sbjct: 211 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 270
Query: 381 IVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTV-------EWHPTESSTFA-SGGA 432
+VSG D + +W+L+ S T T VT + T++ + SG
Sbjct: 271 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK 330
Query: 433 DDQIALWD 440
D + WD
Sbjct: 331 DRGVLFWD 338
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 10/134 (7%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
+ L GHT + ++ + V +S D + +WD + HT DV +
Sbjct: 148 RELAGHTGYLSCCRFLDDNQIVTSS--GDTTCALWDIETGQQTT----TFTGHTGDVMSL 201
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGA 432
S L VSG D +WD+R +G TF H + + + + P + FA+G
Sbjct: 202 SLAPDTRLFVSGACDASAKLWDVR---EGMCRQTFTGHESDINAICFFP-NGNAFATGSD 257
Query: 433 DDQIALWDLAVERD 446
D L+DL +++
Sbjct: 258 DATCRLFDLRADQE 271
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
Query: 365 HTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAP-----VTTVEW 419
H + + + W L+VS DG + +WD S T K H P V T +
Sbjct: 65 HLAKIYAMHWGTDSRLLVSASQDGKLIIWD--------SYTTNKVHAIPLRSSWVMTCAY 116
Query: 420 HPTESSTFASGGADDQIALWDLAVERDSEIEQRE 453
P+ + A GG D+ ++++L + RE
Sbjct: 117 APS-GNYVACGGLDNICSIYNLKTREGNVRVSRE 149
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 10/134 (7%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
+ L GHT + ++ + V +S D + +WD + HT DV +
Sbjct: 137 RELAGHTGYLSCCRFLDDNQIVTSS--GDTTCALWDIETGQQTT----TFTGHTGDVMSL 190
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGA 432
S L VSG D +WD+R +G TF H + + + + P + FA+G
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVR---EGMCRQTFTGHESDINAICFFP-NGNAFATGSD 246
Query: 433 DDQIALWDLAVERD 446
D L+DL +++
Sbjct: 247 DATCRLFDLRADQE 260
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
Query: 365 HTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAP-----VTTVEW 419
H + + + W L++S DG + +WD S T K H P V T +
Sbjct: 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWD--------SYTTNKVHAIPLRSSWVMTCAY 105
Query: 420 HPTESSTFASGGADDQIALWDLAVERDSEIEQRE 453
P+ + A GG D+ ++++L + RE
Sbjct: 106 APS-GNYVACGGLDNICSIYNLKTREGNVRVSRE 138
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 10/134 (7%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
+ L GHT + ++ + V +S D + +WD + HT DV +
Sbjct: 137 RELAGHTGYLSCCRFLDDNQIVTSS--GDTTCALWDIETGQQTT----TFTGHTGDVMSL 190
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGA 432
S L VSG D +WD+R +G TF H + + + + P + FA+G
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVR---EGMCRQTFTGHESDINAICFFP-NGNAFATGSD 246
Query: 433 DDQIALWDLAVERD 446
D L+DL +++
Sbjct: 247 DATCRLFDLRADQE 260
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
Query: 365 HTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAP-----VTTVEW 419
H + + + W L+VS DG + +WD S T K H P V T +
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWD--------SYTTNKVHAIPLRSSWVMTCAY 105
Query: 420 HPTESSTFASGGADDQIALWDLAVERDSEIEQRE 453
P+ + A GG D+ ++++L + RE
Sbjct: 106 APS-GNYVACGGLDNICSIYNLKTREGNVRVSRE 138
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 10/134 (7%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
+ L GHT + ++ + V +S D + +WD + HT DV +
Sbjct: 137 RELAGHTGYLSCCRFLDDNQIVTSS--GDTTCALWDIETGQQTT----TFTGHTGDVMSL 190
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGA 432
S L VSG D +WD+R +G TF H + + + + P + FA+G
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVR---EGMCRQTFTGHESDINAICFFP-NGNAFATGSD 246
Query: 433 DDQIALWDLAVERD 446
D L+DL +++
Sbjct: 247 DATCRLFDLRADQE 260
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
Query: 365 HTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAP-----VTTVEW 419
H + + + W L++S DG + +WD S T K H P V T +
Sbjct: 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWD--------SYTTNKVHAIPLRSSWVMTCAY 105
Query: 420 HPTESSTFASGGADDQIALWDLAVERDSEIEQRE 453
P+ + A GG D+ ++++L + RE
Sbjct: 106 APS-GNYVACGGLDNICSIYNLKTREGNVRVSRE 138
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 10/134 (7%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
+ L GHT + ++ + V +S D + +WD + HT DV +
Sbjct: 137 RELAGHTGYLSCCRFLDDNQIVTSS--GDTTCALWDIETGQQTT----TFTGHTGDVMSL 190
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGA 432
S L VSG D +WD+R +G TF H + + + + P + FA+G
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVR---EGMCRQTFTGHESDINAICFFP-NGNAFATGSD 246
Query: 433 DDQIALWDLAVERD 446
D L+DL +++
Sbjct: 247 DATCRLFDLRADQE 260
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
Query: 365 HTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAP-----VTTVEW 419
H + + + W L+VS DG + +WD S T K H P V T +
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWD--------SYTTNKVHAIPLRSSWVMTCAY 105
Query: 420 HPTESSTFASGGADDQIALWDLAVERDSEIEQRE 453
P+ + A GG D+ ++++L + RE
Sbjct: 106 APS-GNYVACGGLDNICSIYNLKTREGNVRVSRE 138
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 318 HTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTK-SCMLTLPNAHTSDVNVISWNR 376
H V +++P ++A+ SVD ++++WD R I K S + +P H VN +N
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP--HEKPVNAAYFNP 260
Query: 377 TEPL-IVSGGDDGCIHVWDLRRFKKGSSVATFKH----HTAPVTTVEWHPTESSTFASGG 431
T+ +++ I V+ + K + H H P+ WHP A
Sbjct: 261 TDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT-WHPMYDLIVAGRY 319
Query: 432 ADDQIALWD 440
DDQ+ L D
Sbjct: 320 PDDQLLLND 328
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 403 SVATFK-HHTAP-----VTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQ 451
S+ ++K H TA VT++EWHPT +T A G I LWD V+ + Q
Sbjct: 59 SLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ 113
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 318 HTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTK-SCMLTLPNAHTSDVNVISWNR 376
H V +++P ++A+ SVD ++++WD R I K S + +P H VN +N
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP--HEKPVNAAYFNP 259
Query: 377 TEPL-IVSGGDDGCIHVWDLRRFKKGSSVATFKH----HTAPVTTVEWHPTESSTFASGG 431
T+ +++ I V+ + K + H H P+ WHP A
Sbjct: 260 TDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT-WHPMYDLIVAGRY 318
Query: 432 ADDQIALWD 440
DDQ+ L D
Sbjct: 319 PDDQLLLND 327
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 403 SVATFK-HHTAP-----VTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQ 451
S+ ++K H TA VT++EWHPT +T A G I LWD V+ + Q
Sbjct: 58 SLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ 112
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 322 VEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLT--LPNAHTSDVNVISWNRTEP 379
V D+ W EK +L + S ++ +W+ ++ +S ++ H V +S
Sbjct: 97 VTDVAW-VSEKGILVA-SDSGAVELWE--ILEKESLLVNKFAKYEHDDIVKTLSVFSDGT 152
Query: 380 LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALW 439
VSGG D + VWDL + + + ++ H++ V V P + + F S G D +I LW
Sbjct: 153 QAVSGGKDFSVKVWDL---SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
Query: 440 D 440
D
Sbjct: 210 D 210
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 308 WQVDQKPLV----GHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTR 350
W + QK ++ H++ V + PG+ + SC D I +WDTR
Sbjct: 166 WDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 361 LPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSV-----ATFKHHTAPVT 415
NAHT +N IS N +S DD I++W L + ++ A + T +T
Sbjct: 172 FANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVIT 230
Query: 416 TVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQREAELKDLP 460
E+HP +TF + I L D+ R S + R ++L + P
Sbjct: 231 AAEFHPNSCNTFVYSSSKGTIRLCDM---RASALCDRHSKLFEEP 272
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 23/218 (10%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTN----SVEDLQWSPGEKRVLASCSVDLS 343
+ TG + +W PR+ + +P+ G +V E+RV+ + +
Sbjct: 132 IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD 191
Query: 344 IRIWDTRVI------NTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRR 397
I+++D R + N K+ + +L D IS N+ +V+ +G HV+D+R
Sbjct: 192 IKLFDLRNMALRWETNIKNGVCSLE----FDRKDISMNK----LVATSLEGKFHVFDMRT 243
Query: 398 F--KKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALW--DLAVERD-SEIEQR 452
KG + + K H + V V P F + G + LW + ++R + E
Sbjct: 244 QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGI 303
Query: 453 EAELKDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTA 490
E + S L + L + I L W P G + ++
Sbjct: 304 EMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSS 341
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 7/125 (5%)
Query: 281 SSTEPGVLATGDCKRNIHIWTPR--EAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASC 338
+S + LATGD N+HIW E + V + + + +
Sbjct: 76 TSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTG 135
Query: 339 SVDLSIRIWDTRVINTK-SCMLTLPNAHTSDVNVI----SWNRTEPLIVSGGDDGCIHVW 393
S D ++++WD R + + M + + D + ++N+ E ++ +G D+G I ++
Sbjct: 136 SRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLF 195
Query: 394 DLRRF 398
DLR
Sbjct: 196 DLRNM 200
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 317 GHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNR 376
GHT V L + + S S D ++R+WD R+ S + + H D+N + +
Sbjct: 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI---TSRAVRTYHGHEGDINSVKFFP 259
Query: 377 TEPLIVSGGDDGCIHVWDLR 396
+G DDG ++D+R
Sbjct: 260 DGQRFGTGSDDGTCRLFDMR 279
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 380 LIVSGGDDGCIHVWDLRRFKKGSSVATF-----KHHTAPVTTVEWHPTESSTFASGGADD 434
LI GD C+ +WD+ G ++ F HTA V ++ + ++ F SG D
Sbjct: 173 LITGSGDQTCV-LWDV---TTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT 228
Query: 435 QIALWDLAV 443
+ LWDL +
Sbjct: 229 TVRLWDLRI 237
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 9/133 (6%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
+ L GH+ V L W+P EK + S S D + +W+ + + K+ + L H V
Sbjct: 60 RTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNA-LTSQKTHAIKL---HCPWVMEC 114
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLR----RFKKGSSVATFKHHTAPVTTVEWHPTESSTFA 428
++ + GG D +++L R H ++ ++ P + +
Sbjct: 115 AFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI 174
Query: 429 SGGADDQIALWDL 441
+G D LWD+
Sbjct: 175 TGSGDQTCVLWDV 187
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
K VGH N++ +L++ P + +L S S D ++R+W+ + +T + H +V
Sbjct: 104 KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT-DTLVAIFGGVEGHRDEVLSA 162
Query: 373 SWNRTEPLIVSGGDDGCIHVWDL 395
++ I+S G D + +W +
Sbjct: 163 DYDLLGEKIMSCGMDHSLKLWRI 185
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 16/117 (13%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEK---------RVLASC 338
+A GD I ++ + + +V T+ + + W P EK ++A+
Sbjct: 503 IAAGDVXGKILLY---DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG 559
Query: 339 SVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDL 395
S+D +I I+ + ++ NAH VN + W T +VS G D CI W++
Sbjct: 560 SLDTNIFIYS---VKRPXKIIKALNAHKDGVNNLLW-ETPSTLVSSGADACIKRWNV 612
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 18/127 (14%)
Query: 328 SPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEP-------- 379
SP E + A+ V I ++D + K+ TS +N ISW E
Sbjct: 497 SPSETYI-AAGDVXGKILLYDLQSREVKTSRWAF---RTSKINAISWKPAEKGANEEEIE 552
Query: 380 --LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIA 437
L+ +G D I ++ ++R K + H V + W ST S GAD I
Sbjct: 553 EDLVATGSLDTNIFIYSVKRPXK--IIKALNAHKDGVNNLLWET--PSTLVSSGADACIK 608
Query: 438 LWDLAVE 444
W++ +E
Sbjct: 609 RWNVVLE 615
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
K VGH N++ +L++ P + +L S S D ++R+W+ + +T + H +V
Sbjct: 109 KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT-DTLVAIFGGVEGHRDEVLSA 167
Query: 373 SWNRTEPLIVSGGDDGCIHVWDL 395
++ I+S G D + +W +
Sbjct: 168 DYDLLGEKIMSCGMDHSLKLWRI 190
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
K VGH N++ +L++ P + +L S S D ++R+W+ + +T + H +V
Sbjct: 108 KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT-DTLVAIFGGVEGHRDEVLSA 166
Query: 373 SWNRTEPLIVSGGDDGCIHVWDL 395
++ I+S G D + +W +
Sbjct: 167 DYDLLGEKIMSCGMDHSLKLWRI 189
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
K VGH N++ +L++ P + +L S S D ++R+W+ + +T + H +V
Sbjct: 108 KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT-DTLVAIFGGVEGHRDEVLSA 166
Query: 373 SWNRTEPLIVSGGDDGCIHVWDL 395
++ I+S G D + +W +
Sbjct: 167 DYDLLGEKIMSCGMDHSLKLWRI 189
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
K VGH N++ +L++ P + +L S S D ++R+W+ + +T + H +V
Sbjct: 145 KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT-DTLVAIFGGVEGHRDEVLSA 203
Query: 373 SWNRTEPLIVSGGDDGCIHVWDL 395
++ I+S G D + +W +
Sbjct: 204 DYDLLGEKIMSCGMDHSLKLWRI 226
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Query: 318 HTNSVEDLQWSPGEK---------RVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSD 368
T+ + + W P EK ++A+ S+D +I I+ + ++ NAH
Sbjct: 530 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS---VKRPMKIIKALNAHKDG 586
Query: 369 VNVISWNRTEPLIVSGGDDGCIHVWDL 395
VN + W T +VS G D CI W++
Sbjct: 587 VNNLLW-ETPSTLVSSGADACIKRWNV 612
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 14/90 (15%)
Query: 365 HTSDVNVISWNRTEP----------LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPV 414
TS +N ISW E L+ +G D I ++ ++R K + H V
Sbjct: 530 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK--IIKALNAHKDGV 587
Query: 415 TTVEWHPTESSTFASGGADDQIALWDLAVE 444
+ W ST S GAD I W++ +E
Sbjct: 588 NNLLWETP--STLVSSGADACIKRWNVVLE 615
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/175 (18%), Positives = 73/175 (41%), Gaps = 20/175 (11%)
Query: 277 AMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPL----VGHTNSVEDLQWSPGEK 332
++ W T P +A G +I +W + + KP +G S+ L+++P
Sbjct: 125 SLAWHPTHPSTVAVGSKGGDIMLWN------FGIKDKPTFIKGIGAGGSITGLKFNPLNT 178
Query: 333 RVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWN--RTEPLIVSGGDDGCI 390
+ S++ + R+ D + + + ++ T ++ S + + ++V+G + G +
Sbjct: 179 NQFYASSMEGTTRLQDFK----GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNV 234
Query: 391 HVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVER 445
+ ++ G + + H VT V +P A+ D + +WDL R
Sbjct: 235 ILLNM----DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR 285
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
Query: 357 CMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTT 416
C + H + SW P + G +H D R + A F T+
Sbjct: 75 CRSIVRTLHQHKLGRASW----PSVQQGLQQSFLHTLDSYRILQ--KAAPFDRR---ATS 125
Query: 417 VEWHPTESSTFASGGADDQIALWDLAVE 444
+ WHPT ST A G I LW+ ++
Sbjct: 126 LAWHPTHPSTVAVGSKGGDIMLWNFGIK 153
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 282 STEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVD 341
S ++ TGD N+ + W + H V + +P LA+ SVD
Sbjct: 219 SASSRMVVTGDNVGNVILLNMDGKELWNLRM-----HKKKVTHVALNPCCDWFLATASVD 273
Query: 342 LSIRIWDTRVINTKSCML-TLPNAHTSDVNVIS 373
+++IWD R + K+ L +LP+ H + S
Sbjct: 274 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS 306
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/175 (18%), Positives = 73/175 (41%), Gaps = 20/175 (11%)
Query: 277 AMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPL----VGHTNSVEDLQWSPGEK 332
++ W T P +A G +I +W + + KP +G S+ L+++P
Sbjct: 124 SLAWHPTHPSTVAVGSKGGDIMLWN------FGIKDKPTFIKGIGAGGSITGLKFNPLNT 177
Query: 333 RVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWN--RTEPLIVSGGDDGCI 390
+ S++ + R+ D + + + ++ T ++ S + + ++V+G + G +
Sbjct: 178 NQFYASSMEGTTRLQDFK----GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNV 233
Query: 391 HVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVER 445
+ ++ G + + H VT V +P A+ D + +WDL R
Sbjct: 234 ILLNM----DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR 284
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
Query: 357 CMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTT 416
C + H + SW P + G +H D R + A F T+
Sbjct: 74 CRSIVRTLHQHKLGRASW----PSVQQGLQQSFLHTLDSYRILQ--KAAPFDRR---ATS 124
Query: 417 VEWHPTESSTFASGGADDQIALWDLAVE 444
+ WHPT ST A G I LW+ ++
Sbjct: 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIK 152
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 282 STEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVD 341
S ++ TGD N+ + W L H V + +P LA+ SVD
Sbjct: 218 SASSRMVVTGDNVGNVILLNMDGKELWN-----LRMHKKKVTHVALNPCCDWFLATASVD 272
Query: 342 LSIRIWDTRVINTKSCML-TLPNAHTSDVNVIS 373
+++IWD R + K+ L +LP+ H + S
Sbjct: 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS 305
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/175 (18%), Positives = 73/175 (41%), Gaps = 20/175 (11%)
Query: 277 AMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPL----VGHTNSVEDLQWSPGEK 332
++ W T P +A G +I +W + + KP +G S+ L+++P
Sbjct: 124 SLAWHPTHPSTVAVGSKGGDIMLWN------FGIKDKPTFIKGIGAGGSITGLKFNPLNT 177
Query: 333 RVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWN--RTEPLIVSGGDDGCI 390
+ S++ + R+ D + + + ++ T ++ S + + ++V+G + G +
Sbjct: 178 NQFYASSMEGTTRLQDFK----GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNV 233
Query: 391 HVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVER 445
+ ++ G + + H VT V +P A+ D + +WDL R
Sbjct: 234 ILLNM----DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR 284
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
Query: 357 CMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTT 416
C + H + SW P + G +H D R + A F T+
Sbjct: 74 CRSIVRTLHQHKLGRASW----PSVQQGLQQSFLHTLDSYRILQ--KAAPFDRR---ATS 124
Query: 417 VEWHPTESSTFASGGADDQIALWDLAVE 444
+ WHPT ST A G I LW+ ++
Sbjct: 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIK 152
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 282 STEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVD 341
S ++ TGD N+ + W L H V + +P LA+ SVD
Sbjct: 218 SASSRMVVTGDNVGNVILLNMDGKELWN-----LRMHKKKVTHVALNPCCDWFLATASVD 272
Query: 342 LSIRIWDTRVINTKSCML-TLPNAHTSDVNVIS 373
+++IWD R + K+ L +LP+ H + S
Sbjct: 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS 305
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 364 AHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTE 423
H ++V+ +N T L++S DDG + +W G+S F H+ + + W
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIW---HGGNGNSQNCFYGHSQSIVSASW--VG 299
Query: 424 SSTFASGGADDQIALWDL 441
S D + LW L
Sbjct: 300 DDKVISCSMDGSVRLWSL 317
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 366 TSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESS 425
T+ V ++W+ IV+G ++G + +W+ K G+ + H AP+ +V+W+ + +
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN----KTGALLNVLNFHRAPIVSVKWNK-DGT 162
Query: 426 TFASGGADDQIALWDL 441
S ++ LW++
Sbjct: 163 HIISMDVENVTILWNV 178
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 307 AWQVDQK----PLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLP 362
+Q+ +K L+GH + L+++ K +L S S D ++RIW N+++C
Sbjct: 231 VYQITEKTPTGKLIGHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNGNSQNCFY--- 286
Query: 363 NAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRR 397
H+ + SW + ++S DG + +W L++
Sbjct: 287 -GHSQSIVSASWVGDDK-VISCSMDGSVRLWSLKQ 319
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 14/142 (9%)
Query: 261 PTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTN 320
PT L G ++ ++++ T +L+ D + IW + Q GH+
Sbjct: 239 PTGKLIGHHGPIS---VLEFNDTNKLLLSASD-DGTLRIWHGGNGNS----QNCFYGHSQ 290
Query: 321 SVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPL 380
S+ W G+ +V+ SCS+D S+R+W + ++ +L L + ++
Sbjct: 291 SIVSASW-VGDDKVI-SCSMDGSVRLWSLK----QNTLLALSIVDGVPIFAGRISQDGQK 344
Query: 381 IVSGGDDGCIHVWDLRRFKKGS 402
DG ++V+DL++ S
Sbjct: 345 YAVAFMDGQVNVYDLKKLNSKS 366
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 456 LKDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTANSGFNIFRTISDLPSQLLFIHLGQK 515
L DLP L FI G +++EL LP ++ + N + + DLP L I G
Sbjct: 168 LPDLPPSLEFIAAGNNQLEELPELQNLP--FLTAIYADNNSLKKLPDLPLSLESIVAGNN 225
Query: 516 EIKELHWHPQLPGTIISTANSGFNIFRTI 544
++EL LP ++T + N+ +T+
Sbjct: 226 ILEELPELQNLP--FLTTIYADNNLLKTL 252
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 325 LQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSG 384
+ +SP + + LAS ++D I I+D I T + TL H + ++++ L+V+
Sbjct: 170 IAYSP-DGKYLASGAIDGIINIFD---IATGKLLHTL-EGHAMPIRSLTFSPDSQLLVTA 224
Query: 385 GDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTES 424
DDG I ++D++ + T H + V V + P ++
Sbjct: 225 SDDGYIKIYDVQH---ANLAGTLSGHASWVLNVAFCPDDT 261
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 27/140 (19%)
Query: 317 GHTNSVEDLQWSPGEKRVLASCSVD--LSIRIWDTR---------------VINTKSCML 359
G + D+ P E+ A S+D +++ +D + +N K L
Sbjct: 191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL 250
Query: 360 TLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHT----APVT 415
P VN I ++ + + G DG I W+L+ KK + A F + A
Sbjct: 251 AYP------VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD 304
Query: 416 TVEWHPTESSTFASGGADDQ 435
+ T TF + A DQ
Sbjct: 305 NILCLATSDDTFKTNAAIDQ 324
>pdb|3SRC|A Chain A, Structure Of Pseudomonas Aeruginosa Pvdq Bound To Ns2028
Length = 164
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 451 QREAELKDLPSQLLFIHLGQKEIKELHWHPQLPGT--IISTANSGFNIFRTISD 502
+ AEL +LPS + + L Q E + W Q P ++ +GFN F +D
Sbjct: 61 KSSAELDNLPSDIFYAWLNQPEALQAFWQAQTPAVRQLLEGYAAGFNRFLREAD 114
>pdb|3SRA|A Chain A, Structure Of Pseudomonas Aerugionsa Pvdq Covalently
Acylated With Myristic Acid From Pvdiq
pdb|3SRB|A Chain A, Structure Of Pseudomonas Aeruginosa Pvdq Bound To Smer28
Length = 163
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 451 QREAELKDLPSQLLFIHLGQKEIKELHWHPQLPGT--IISTANSGFNIFRTISD 502
+ AEL +LPS + + L Q E + W Q P ++ +GFN F +D
Sbjct: 61 KSSAELDNLPSDIFYAWLNQPEALQAFWQAQTPAVRQLLEGYAAGFNRFLREAD 114
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 352 INTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHT 411
+N K L P VN I ++ + + G DG I W+L+ KK + A F +
Sbjct: 243 LNLKDTNLAYP------VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDS 296
Query: 412 ----APVTTVEWHPTESSTFASGGADDQ 435
A + T TF + A DQ
Sbjct: 297 VVKIACSDNILCLATSDDTFKTNAAIDQ 324
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 27/140 (19%)
Query: 317 GHTNSVEDLQWSPGEKRVLASCSVD--LSIRIWDTR---------------VINTKSCML 359
G + D+ P E+ A S+D +++ +D + +N K L
Sbjct: 191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL 250
Query: 360 TLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHT----APVT 415
P VN I ++ + + G DG I W+L+ KK + A F + A
Sbjct: 251 AYP------VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD 304
Query: 416 TVEWHPTESSTFASGGADDQ 435
+ T TF + A DQ
Sbjct: 305 NILCLATSDDTFKTNAAIDQ 324
>pdb|2WYB|A Chain A, The Quorum Quenching N-Acyl Homoserine Lactone Acylase
Pvdq With A Covalently Bound Dodecanoic Acid
pdb|2WYC|A Chain A, The Quorum Quenching N-Acyl Homoserine Lactone Acylase
Pvdq In Complex With 3-Oxo-Lauric Acid
pdb|2WYD|A Chain A, The Quorum Quenching N-Acyl Homoserine Lactone Acylase
Pvdq In Complex With Dodecanoic Acid
pdb|2WYE|A Chain A, The Quorum Quenching N-Acyl Homoserine Lactone Acylase
Pvdq Is An Ntn-Hydrolase With An Unusual
Substrate-Binding Pocket
pdb|3L91|A Chain A, Structure Of Pseudomonas Aerugionsa Pvdq Bound To
Octanoate
pdb|3L94|A Chain A, Structure Of Pvdq Covalently Acylated With Myristate
Length = 170
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 451 QREAELKDLPSQLLFIHLGQKEIKELHWHPQLPGT--IISTANSGFNIFRTISD 502
+ AEL +LPS + + L Q E + W Q P ++ +GFN F +D
Sbjct: 66 KSSAELDNLPSDIFYAWLNQPEALQAFWQAQTPAVRQLLEGYAAGFNRFLREAD 119
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 353 NTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVW 393
N + +L+ + H +V +SWN T ++ S GDDG + +W
Sbjct: 291 NLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 331
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 353 NTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVW 393
N + +L+ + H +V +SWN T ++ S GDDG + +W
Sbjct: 293 NLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 352 INTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHT 411
+N K L P VN I ++ + + G DG I W+L+ KK + A F +
Sbjct: 243 LNLKDTNLAYP------VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDS 296
Query: 412 ----APVTTVEWHPTESSTFASGGADDQ 435
A + T TF + A DQ
Sbjct: 297 VVKIACSDNILCLATSDDTFKTNAAIDQ 324
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 353 NTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVW 393
N + +L+ + H +V +SWN T ++ S GDDG + +W
Sbjct: 293 NLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 410 HTAPVTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQREAELKDL 459
HT PV V W S F + D +WDL+ + +I Q +A +K +
Sbjct: 85 HTGPVLDVCWSDDGSKVF-TASCDKTAKMWDLSSNQAIQIAQHDAPVKTI 133
>pdb|3TVZ|A Chain A, Structure Of Bacillus Subtilis Hmob
pdb|3TVZ|B Chain B, Structure Of Bacillus Subtilis Hmob
pdb|3TVZ|C Chain C, Structure Of Bacillus Subtilis Hmob
Length = 172
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 615 IWDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMD 663
+W+ + A Q E +KKRG GI T +FS ++T FA++
Sbjct: 124 LWETERAFQDWQQSDSYKEAHKKRGTSAGIDTTSIFSRPSYVTTYFAVE 172
>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
pdb|2I6L|B Chain B, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
Length = 320
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 28/64 (43%)
Query: 264 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVE 323
P +S GHL+EG W + +L+ + + I +W A + K L + +E
Sbjct: 173 PHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELE 232
Query: 324 DLQW 327
+Q
Sbjct: 233 QMQL 236
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 276 FAMDWSSTEPGVLATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSP-GE 331
FA +E G++ATG + I T R ++ Q ++ ++NS+ +++SP G
Sbjct: 198 FATSVDISERGLIATGFNNGTVQISELSTLRPLYNFE-SQHSMINNSNSIRSVKFSPQGS 256
Query: 332 KRVLASCSVDLS-IRIWDTRV--------INTKSCMLTLPN-AHTSDVNVISWNRTEPLI 381
+A S I +++T + T S +L AH+S V +S+N + +
Sbjct: 257 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 316
Query: 382 VSGGDDGCIHVWDLR 396
S G DG + WD++
Sbjct: 317 CSAGWDGKLRFWDVK 331
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 370 NVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFAS 429
NV S + + +++SG D VW K+GS V + H A V + + F +
Sbjct: 106 NVCSLSFQDGVVISGSWDKTAKVW-----KEGSLVYNLQAHNASVWDAKVVSFSENKFLT 160
Query: 430 GGADDQIALW 439
AD I LW
Sbjct: 161 ASADKTIKLW 170
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 276 FAMDWSSTEPGVLATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSP-GE 331
FA +E G++ATG + I T R ++ Q ++ ++NS+ +++SP G
Sbjct: 188 FATSVDISERGLIATGFNNGTVQISELSTLRPLYNFE-SQHSMINNSNSIRSVKFSPQGS 246
Query: 332 KRVLASCSVDLS-IRIWDTRV--------INTKSCMLTLPN-AHTSDVNVISWNRTEPLI 381
+A S I +++T + T S +L AH+S V +S+N + +
Sbjct: 247 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 306
Query: 382 VSGGDDGCIHVWDLR 396
S G DG + WD++
Sbjct: 307 CSAGWDGKLRFWDVK 321
>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Neogenin
Length = 132
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 488 STANSGFNIFRTISDLPS---QLLFIHLGQKEIKELHWHPQLPGT 529
S+ +SG RT+SD+PS Q L + + + +HW P P T
Sbjct: 2 SSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPAT 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,210,633
Number of Sequences: 62578
Number of extensions: 1059746
Number of successful extensions: 2965
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 2167
Number of HSP's gapped (non-prelim): 486
length of query: 812
length of database: 14,973,337
effective HSP length: 107
effective length of query: 705
effective length of database: 8,277,491
effective search space: 5835631155
effective search space used: 5835631155
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)