RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4510
(812 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 113 bits (284), Expect = 1e-27
Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 9/128 (7%)
Query: 315 LVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISW 374
L GHT+ V + +SP + R+L+S S D +I++WD T C+ TL HT VN +++
Sbjct: 89 LTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVE---TGKCLTTL-RGHTDWVNSVAF 143
Query: 375 NRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADD 434
+ + S DG I +WDLR G VAT HT V +V + P S +D
Sbjct: 144 SPDGTFVASSSQDGTIKLWDLR---TGKCVATLTGHTGEVNSVAFSPDGEK-LLSSSSDG 199
Query: 435 QIALWDLA 442
I LWDL+
Sbjct: 200 TIKLWDLS 207
Score = 100 bits (251), Expect = 3e-23
Identities = 57/178 (32%), Positives = 82/178 (46%), Gaps = 16/178 (8%)
Query: 264 PLFSFSGHLTEGFAMDWS-STEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSV 322
L + GH + + S + +A+ I +W R L GHT V
Sbjct: 127 CLTTLRGH--TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT----LTGHTGEV 180
Query: 323 EDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIV 382
+ +SP ++ L S S D +I++WD T C+ TL H + VN ++++ L+
Sbjct: 181 NSVAFSPDGEK-LLSSSSDGTIKLWDLS---TGKCLGTLR-GHENGVNSVAFSPDGYLLA 235
Query: 383 SGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWD 440
SG +DG I VWDLR G V T HT VT++ W P ASG AD I +WD
Sbjct: 236 SGSEDGTIRVWDLR---TGECVQTLSGHTNSVTSLAWSPD-GKRLASGSADGTIRIWD 289
Score = 88.9 bits (221), Expect = 2e-19
Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 9/128 (7%)
Query: 315 LVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISW 374
L GHT V + +SP + ++LA+ S D +I++WD T + TL HT V ++
Sbjct: 5 LKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDL---ETGELLRTLKG-HTGPVRDVAA 59
Query: 375 NRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADD 434
+ + SG D I +WDL + G V T HT+ V++V + P +S D
Sbjct: 60 SADGTYLASGSSDKTIRLWDL---ETGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDK 115
Query: 435 QIALWDLA 442
I +WD+
Sbjct: 116 TIKVWDVE 123
Score = 86.2 bits (214), Expect = 2e-18
Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 22/227 (9%)
Query: 168 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAE 227
+ + +GH + ++ +S +L++ + I +W L GHT+
Sbjct: 85 CVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKC----LTTLRGHTDWVN 139
Query: 228 DLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGV 287
+ +S T + + + + + GK + + +GH E ++ +S +
Sbjct: 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGK-------CVATLTGHTGEVNSVAFSPDGEKL 192
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
L++ I +W G L GH N V + +SP +LAS S D +IR+W
Sbjct: 193 LSSSS-DGTIKLWDLS-TGKCL---GTLRGHENGVNSVAFSPD-GYLLASGSEDGTIRVW 246
Query: 348 DTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWD 394
D R T C+ TL HT+ V ++W+ + SG DG I +WD
Sbjct: 247 DLR---TGECVQTLS-GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
Score = 55.8 bits (135), Expect = 3e-08
Identities = 78/372 (20%), Positives = 130/372 (34%), Gaps = 97/372 (26%)
Query: 403 SVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQ 462
T K HT VT V + P + A+G D I +WDL E + LK
Sbjct: 1 LRRTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDL------ETGELLRTLK----- 48
Query: 463 LLFIHLGQKEIKELHWHPQLPGTIISTANSGF-NIFRTISDLPSQLLFIHLGQKEIKELH 521
H G ++++ + S ++ ++ + + L H + +
Sbjct: 49 ---GHTG--PVRDVAASADGT-YLASGSSDKTIRLWDLETGECVRTLTGH--TSYVSSVA 100
Query: 522 WHPQLPGTIISTANSGFNIFRTISMSNLTSTEEDNERELEDDESEGSGDEDRRKDPVMNS 581
+ P G I+S+++ +TI + ++ + + L
Sbjct: 101 FSPD--GRILSSSSRD----KTIKVWDVETGKC--LTTLRG------------------- 133
Query: 582 YFIRHRGCINRVRTCQYGSTTLAGVWGEVGKVGIWDLKTALQTVDDPFQLAEHNKKRGKG 641
H +N V G T +A + G + +WDL+T
Sbjct: 134 ----HTDWVNSVAFSPDG-TFVASSSQD-GTIKLWDLRTG-------------------- 167
Query: 642 PGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPR-----------EAG 690
+ + +GH E ++ +S +L++ I +W E G
Sbjct: 168 -----KCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKCLGTLRGHENG 221
Query: 691 AWSVYLYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRV 750
SV + +LA+G I +W + + Q L GHTNSV L WSP KR
Sbjct: 222 VNSVAFSPDG-YLLASGSEDGTIRVW---DLRTGECVQT-LSGHTNSVTSLAWSPDGKR- 275
Query: 751 LASCSVDRSNRI 762
LAS S D + RI
Sbjct: 276 LASGSADGTIRI 287
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 92.8 bits (229), Expect = 9e-20
Identities = 67/278 (24%), Positives = 122/278 (43%), Gaps = 22/278 (7%)
Query: 164 IPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHT 223
PL + +GH ++ +S ++A+G I +W ++ + L GH+
Sbjct: 186 RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS---TGKLLRSTLSGHS 242
Query: 224 NSAEDLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSST 283
+S +S + L + + + + L + SGH + ++ +S
Sbjct: 243 DSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSS------SLLRTLSGHSSSVLSVAFSP- 294
Query: 284 EPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLS 343
+ +LA+G + +W + L GH V L +SP +++ S D +
Sbjct: 295 DGKLLASGSSDGTVRLWDLETGK--LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGT 352
Query: 344 IRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSS 403
IR+WD + T + TL S+V +S++ ++ SG DG + +WDL GS
Sbjct: 353 IRLWD---LRTGKPLKTLE--GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLST---GSL 404
Query: 404 VATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
+ HT+ VT++++ P S ASG +D+ I LWDL
Sbjct: 405 LRNLDGHTSRVTSLDFSPDGKS-LASGSSDNTIRLWDL 441
Score = 88.6 bits (218), Expect = 2e-18
Identities = 72/282 (25%), Positives = 116/282 (41%), Gaps = 25/282 (8%)
Query: 162 PGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGG 221
P + + GH ++ +S + + I +W R L G
Sbjct: 141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT----GKPLSTLAG 196
Query: 222 HTNSAEDLQWS-DLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDW 280
HT+ L +S D + + + + GK + SGH ++ +
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK------LLRSTLSGH-SDSVVSSF 249
Query: 281 SSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSV 340
S +LA+G I +W R + + L GH++SV + +SP K +LAS S
Sbjct: 250 SPDGS-LLASGSSDGTIRLWDLR---SSSSLLRTLSGHSSSVLSVAFSPDGK-LLASGSS 304
Query: 341 DLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGG-DDGCIHVWDLRRFK 399
D ++R+WD K H V+ +S++ L+VSGG DDG I +WDLR
Sbjct: 305 DGTVRLWDLE--TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR--- 359
Query: 400 KGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
G + T + H+ V +V + P +SG D + LWDL
Sbjct: 360 TGKPLKTLEGHS-NVLSVSFSPDG-RVVSSGSTDGTVRLWDL 399
Score = 77.1 bits (188), Expect = 1e-14
Identities = 73/399 (18%), Positives = 137/399 (34%), Gaps = 59/399 (14%)
Query: 235 KTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCK 294
+ L + +P GH ++ +S +L +G
Sbjct: 28 LSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGE-LLLSGSSD 86
Query: 295 RNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQW-SPGEKRVLASCS-VDLSIRIWDTRVI 352
I +W + L H +SV L SP +L + S +D ++++WD +
Sbjct: 87 GTIKLWDLDNGEKLIKSLEGL--HDSSVSKLALSSPDGNSILLASSSLDGTVKLWD---L 141
Query: 353 NTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGD-DGCIHVWDLRRFKKGSSVATFKHHT 411
+T ++ H+ V ++++ L+ SG DG I +WDLR G ++T HT
Sbjct: 142 STPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR---TGKPLSTLAGHT 198
Query: 412 APVTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLFIHLGQK 471
PV+++ + P ASG +D I LWDL+ L L H
Sbjct: 199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLST-------------GKLLRSTLSGHSDSV 245
Query: 472 EIKELHWHPQLPGTIISTANSGFNIFRTISDLPSQLLFIHLGQKEIKELHWHPQLPGTII 531
+ L + S ++ G + S L + + + + P +
Sbjct: 246 -VSSFSPDGSL---LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD-GKLLA 300
Query: 532 STANSGFNIFRTISMSNLTSTEEDNERELEDDESEGSGDEDRRKDPVMNSYFIRHRGCIN 591
S ++ G T+ + +L + + + H G ++
Sbjct: 301 SGSSDG-----TVRLWDLET-----------------------GKLLSSLTLKGHEGPVS 332
Query: 592 RVRTCQYGSTTLAGVWGEVGKVGIWDLKTALQTVDDPFQ 630
+ GS ++G + G + +WDL+T
Sbjct: 333 SLSFSPDGSLLVSGGSDD-GTIRLWDLRTGKPLKTLEGH 370
Score = 62.8 bits (151), Expect = 3e-10
Identities = 51/242 (21%), Positives = 95/242 (39%), Gaps = 20/242 (8%)
Query: 171 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQ 230
+ SGH ++ +S +LA+G I +W R + + L GH++S +
Sbjct: 237 TLSGH-SDSVVSSFSPDGS-LLASGSSDGTIRLWDLR---SSSSLLRTLSGHSSSVLSVA 291
Query: 231 WSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLAT 290
+S L + + + + GK + GH ++ +S +++
Sbjct: 292 FSPDGKLLASGSSDGTVRLWDLETGK-----LLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346
Query: 291 GDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTR 350
G I +W R + ++V + +SP RV++S S D ++R+WD
Sbjct: 347 GSDDGTIRLWDLRTGKPLKTL-----EGHSNVLSVSFSPDG-RVVSSGSTDGTVRLWDLS 400
Query: 351 VINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHH 410
+L + HTS V + ++ + SG D I +WDL+ K S +
Sbjct: 401 ----TGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKV 456
Query: 411 TA 412
A
Sbjct: 457 LA 458
Score = 47.8 bits (112), Expect = 2e-05
Identities = 67/417 (16%), Positives = 123/417 (29%), Gaps = 96/417 (23%)
Query: 360 TLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEW 419
P+ ++ + + + + L+++ D + + DL + H +T++ +
Sbjct: 21 LGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSS-------LLLRGHEDSITSIAF 73
Query: 420 HPTESSTFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLFIHLGQKEIKELHWH 479
P SG +D I LWDL + E +K L K
Sbjct: 74 SPD-GELLLSGSSDGTIKLWDL--------DNGEKLIKSLEG-----LHDSSVSKLALSS 119
Query: 480 PQLPGTIISTANSGFNIFRTISDLPSQLLFIH---LGQKEIKELHWHPQLPGTIISTANS 536
P G I A+S + + DL + I + + L + P ++
Sbjct: 120 PD--GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLD 177
Query: 537 GFNIFRTISMSNLTSTEEDNERELEDDESEGSGDEDRRKDPVMNSYFIRHRGCINRVRTC 596
G + ST H ++ +
Sbjct: 178 GTIKLWDLRTGKPLSTLAG------------------------------HTDPVSSLAFS 207
Query: 597 QYGSTTLAGVWGEVGKVGIWDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHL 656
G +A G + +WDL T + SGH
Sbjct: 208 PDGGLLIASG-SSDGTIRLWDLSTGKLLRS------------------------TLSGH- 241
Query: 657 TEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWSVYLYTNRFGV-----------LA 705
++ +S +LA+G I +W R + + L + V LA
Sbjct: 242 SDSVVSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLA 300
Query: 706 TGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+G + +W + L GH V L +SP +++ S D + R+
Sbjct: 301 SGSSDGTVRLWDLETGK--LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355
Score = 47.4 bits (111), Expect = 2e-05
Identities = 34/151 (22%), Positives = 55/151 (36%), Gaps = 15/151 (9%)
Query: 644 IPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWSVYLYTNRFGV 703
PL + +GH ++ +S ++A+G I +W L + V
Sbjct: 186 RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245
Query: 704 ----------LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLAS 753
LA+G I +W R + + L GH++SV + +SP K +LAS
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLR---SSSSLLRTLSGHSSSVLSVAFSPDGK-LLAS 301
Query: 754 CSVDRSNRIG-ARRDMLYCFFVSLVHCIFVW 783
S D + R+ L H V
Sbjct: 302 GSSDGTVRLWDLETGKLLSSLTLKGHEGPVS 332
>gnl|CDD|221499 pfam12265, CAF1C_H4-bd, Histone-binding protein RBBP4 or subunit C
of CAF1 complex. The CAF-1 complex is a conserved
heterotrimeric protein complex that promotes histone H3
and H4 deposition onto newly synthesized DNA during
replication or DNA repair; specifically it facilitates
replication-dependent nucleosome assembly with the major
histone H3 (H3.1). This domain is an alpha helix which
sits just upstream of the WD40 seven-bladed
beta-propeller in the human RbAp46 protein. RbAp46 folds
into the beta-propeller and binds histone H4 in a groove
formed between this N-terminal helix and an extended
loop inserted into blade six.
Length = 73
Score = 66.1 bits (162), Expect = 1e-13
Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 67 VYDPSAYVMLHEAQTGAPCLSFDIIKDEL-GDERTAYPQTLYAVAGTQSKKFNFNRLIVM 125
DP Y MLH P LSFD + D L GD R YP T + GTQ+ N L+V
Sbjct: 9 KNDPFLYDMLHTHALEWPSLSFDWLPDLLKGDNR--YPHTQRLLLGTQTSGQEQNYLLVA 66
Query: 126 KMSNLT 131
K+S +
Sbjct: 67 KVSLPS 72
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 65.4 bits (159), Expect = 6e-11
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 14/103 (13%)
Query: 309 QVDQKPLV---GHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTR-------VINTKSCM 358
Q+ + P++ GHT+S+ DLQ++P +LAS S DL+IR+W+ I C+
Sbjct: 61 QMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI 120
Query: 359 LTLPNAHTSDVNVISWNRTEPLIV-SGGDDGCIHVWDLRRFKK 400
L H +++I WN I+ S G D +++WD+ K+
Sbjct: 121 L---KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR 160
Score = 39.2 bits (91), Expect = 0.008
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 379 PLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIAL 438
P V GG G I L + V K HT+ + ++++P S ASG D I +
Sbjct: 44 PWEVEGG--GLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRV 101
Query: 439 WDLAVERDSEIEQREAELKDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTANSGFNIFR 498
W++ +S E+KD P +L H +K+I + W+P + I+ + SGF+ F
Sbjct: 102 WEIPHNDES-----VKEIKD-PQCILKGH--KKKISIIDWNP-MNYYIMCS--SGFDSFV 150
Query: 499 TISDLPSQ 506
I D+ ++
Sbjct: 151 NIWDIENE 158
Score = 35.7 bits (82), Expect = 0.094
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 725 QVDQKPLV---GHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
Q+ + P++ GHT+S+ DLQ++P +LAS S D + R+
Sbjct: 61 QMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRV 101
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 45.0 bits (107), Expect = 2e-06
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 401 GSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWD 440
G + T K HT PVT+V + P + ASG D + +WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39
Score = 43.9 bits (104), Expect = 3e-06
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 355 KSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWD 394
+ TL HT V ++++ L+ SG DDG + VWD
Sbjct: 1 GKLLRTL-KGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 40.0 bits (94), Expect = 9e-05
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 315 LVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWD 348
L GHT V + +SP + +LAS S D ++R+WD
Sbjct: 7 LKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39
Score = 31.6 bits (72), Expect = 0.091
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 731 LVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L GHT V + +SP + +LAS S D + R+
Sbjct: 7 LKGHTGPVTSVAFSP-DGNLLASGSDDGTVRV 37
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 44.6 bits (106), Expect = 2e-06
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 400 KGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWD 440
G + T K HT PVT+V + P ASG D I LWD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40
Score = 44.2 bits (105), Expect = 3e-06
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 354 TKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWD 394
+ + TL HT V ++++ + SG DDG I +WD
Sbjct: 1 SGELLKTL-KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 40.8 bits (96), Expect = 5e-05
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 315 LVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWD 348
L GHT V + +SP K LAS S D +I++WD
Sbjct: 8 LKGHTGPVTSVAFSPDGKY-LASGSDDGTIKLWD 40
Score = 31.1 bits (71), Expect = 0.12
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 731 LVGHTNSVEDLQWSPGEKRVLASCSVDRS 759
L GHT V + +SP K LAS S D +
Sbjct: 8 LKGHTGPVTSVAFSPDGKY-LASGSDDGT 35
Score = 26.9 bits (60), Expect = 4.1
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 168 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW 204
L + GH ++ +S LA+G I +W
Sbjct: 4 LLKTLKGHTGPVTSVAFSPDGK-YLASGSDDGTIKLW 39
Score = 26.9 bits (60), Expect = 4.1
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 264 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW 300
L + GH ++ +S LA+G I +W
Sbjct: 4 LLKTLKGHTGPVTSVAFSPDGK-YLASGSDDGTIKLW 39
Score = 26.9 bits (60), Expect = 4.1
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 648 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW 684
L + GH ++ +S LA+G I +W
Sbjct: 4 LLKTLKGHTGPVTSVAFSPDGK-YLASGSDDGTIKLW 39
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 42.2 bits (99), Expect = 0.001
Identities = 37/147 (25%), Positives = 56/147 (38%), Gaps = 12/147 (8%)
Query: 300 WTPREAGAWQVDQKPLV---GHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKS 356
W E G Q P+V GHT V + + P VLAS D+ + +WD +
Sbjct: 103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWD---VERGK 159
Query: 357 CMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTT 416
+ + H+ + + WN L+ + D +++ D R SSV H +A
Sbjct: 160 AVEVIKC-HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEA--HASAKSQR 216
Query: 417 VEWHPTESSTFASG---GADDQIALWD 440
W + G QI LWD
Sbjct: 217 CLWAKRKDLIITLGCSKSQQRQIMLWD 243
Score = 33.3 bits (76), Expect = 0.50
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 386 DDGCIHVWDLRRFKKGSSVAT----FKHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
+DG I W + +++ + HT V V +HP+ + AS GAD + +WD
Sbjct: 96 EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWD- 154
Query: 442 AVERDSEIE 450
VER +E
Sbjct: 155 -VERGKAVE 162
>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory
subunit [Signal transduction mechanisms].
Length = 460
Score = 37.7 bits (87), Expect = 0.022
Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 16/160 (10%)
Query: 287 VLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRI 346
+L+T D + I +W E V + N++ D SP + ++ + L
Sbjct: 103 LLSTND--KTIKLWKIYEKNLKVVAE-------NNLSDSFHSPMGGPLTSTKELLLPRLS 153
Query: 347 WDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVAT 406
+I K C + NAH +N IS+N + ++S DD I++W+L ++
Sbjct: 154 EHDEIIAAKPCRVY-ANAHPYHINSISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVD 211
Query: 407 FKHH-----TAPVTTVEWHPTESSTFASGGADDQIALWDL 441
K H T +T+ E+HP + F + +I L DL
Sbjct: 212 IKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDL 251
Score = 30.4 bits (68), Expect = 4.8
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 309 QVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLP 362
VD +S+ D ++S + +L+ L+++IWD K+ + T+P
Sbjct: 270 GVDVDFFEEIVSSISDFKFSDNGRYILSRDY--LTVKIWDVN--MAKNPIKTIP 319
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 36.2 bits (83), Expect = 0.071
Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 28/148 (18%)
Query: 308 WQVDQKPLVG----HTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTR------VINTKS- 356
W V + LV H V + +S + +LAS S D S+++W I TK+
Sbjct: 560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN 619
Query: 357 -CMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVT 415
C + P+ + + G D ++ +DLR K + T H+ V+
Sbjct: 620 ICCVQFPS------------ESGRSLAFGSADHKVYYYDLRNPK--LPLCTMIGHSKTVS 665
Query: 416 TVEWHPTESSTFASGGADDQIALWDLAV 443
V + +SST S D+ + LWDL++
Sbjct: 666 YVRF--VDSSTLVSSSTDNTLKLWDLSM 691
Score = 35.8 bits (82), Expect = 0.092
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 331 EKRVLASCSVDLSIRIWDTRVINTKSCMLTLPN---AHTSDVNVISWNR-TEPLIVSGGD 386
+ A+ V+ I+I++ I + P A S ++ I WN + + S
Sbjct: 494 DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNF 553
Query: 387 DGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
+G + VWD+ R V K H V ++++ + + ASG D + LW +
Sbjct: 554 EGVVQVWDVAR---SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI 605
Score = 31.2 bits (70), Expect = 2.9
Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 18/147 (12%)
Query: 271 HLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDL---QW 327
H +++D+SS +P +LA+G ++ +W+ ++Q +G + ++ Q+
Sbjct: 574 HEKRVWSIDYSSADPTLLASGSDDGSVKLWS--------INQGVSIGTIKTKANICCVQF 625
Query: 328 SPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDD 387
R LA S D + +D R C + H+ V+ + + + L VS D
Sbjct: 626 PSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI---GHSKTVSYVRFVDSSTL-VSSSTD 681
Query: 388 GCIHVWDLRRFKKG---SSVATFKHHT 411
+ +WDL G + + +F HT
Sbjct: 682 NTLKLWDLSMSISGINETPLHSFMGHT 708
>gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional.
Length = 331
Score = 33.9 bits (78), Expect = 0.31
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
Query: 762 IGARRDMLYCFF-VSLVHCIFVWLKYQLFVDVYYWAFVDLVYYI 804
IGA+ L F + LV +F WL + W F L+Y+I
Sbjct: 220 IGAKNTFLVSFIIIDLVFAVFAWLAWS-------WGFTVLMYFI 256
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 33.6 bits (77), Expect = 0.51
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 13 EASNDIVDNDSDEDMEQGEESKDKTKPDESKEEKE---KKTRKV 53
E ++ + + +E E+ E++ DK + + +EEKE KKT+KV
Sbjct: 34 EVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKV 77
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP),
alpha subunit. The alpha-subunit of the TRAP complex
(TRAP alpha) is a single-spanning membrane protein of
the endoplasmic reticulum (ER) which is found in
proximity of nascent polypeptide chains translocating
across the membrane.
Length = 281
Score = 32.1 bits (73), Expect = 1.2
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 13 EASNDIVDNDSDEDMEQGEESKDKTKPDESKEEKEKKT 50
EA +D+VD D +++ E+ + T+ +E +E + K +
Sbjct: 39 EAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEVKAS 76
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 31.3 bits (71), Expect = 2.0
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 13 EASNDIVDNDSDEDMEQGEESKDKTKPDESKEEKEKKTRKVYLP 56
+ S D E E S + SK+ KEKKT +LP
Sbjct: 231 DTSESESDESDSEISESRSVSDSEESSPPSKKPKEKKTSSTFLP 274
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 30.1 bits (68), Expect = 2.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 20 DNDSDEDMEQGEESKDKTKPDESKEEKEKKTRK 52
+ DE+ E EES D+T+ ++ E K + K
Sbjct: 92 SSSDDEEEETEEESTDETEQEDPPETKTESKEK 124
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 31.1 bits (70), Expect = 2.6
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 10 PALEASNDIVDNDSDEDMEQGEESKDKTKPDESKEEKEKKTRK 52
+ E D ++S ED+ +ES++ + +E E+ ++ K
Sbjct: 948 ESDETDEDEESDESSEDLS-EDESENDSSDEEDGEDWDELESK 989
>gnl|CDD|184260 PRK13704, PRK13704, plasmid SOS inhibition protein A; Provisional.
Length = 240
Score = 30.4 bits (69), Expect = 3.5
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 439 WDLAVERDSEIEQREAELKDLPSQLLFIHLGQKEIKELHWHPQLPGTI 486
+A +R S + REAE K Q L + Q EI EL +H P T+
Sbjct: 122 SAIAFQRYSRQQAREAEQKWRAYQNL---VAQAEI-ELAFH--SPETV 163
>gnl|CDD|143219 cd05742, Ig1_VEGFR_like, First immunoglobulin (Ig)-like domain of
vascular endothelial growth factor (VEGF) receptor (R)
and similar proteins. Ig1_VEGFR_like: first
immunoglobulin (Ig)-like domain of vascular endothelial
growth factor (VEGF) receptor(R) related proteins. The
VEGFRs have an extracellular component with seven
Ig-like domains, a transmembrane segment, and an
intracellular tyrosine kinase domain interrupted by a
kinase-insert domain. The VEGFR family consists of three
members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and
VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and
VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds
more weakly. VEGFR-3 appears not to bind VEGF, but binds
other members of the VEGF family (VEGF-C and -D). VEGFRs
bind VEGFs with high affinity with the IG-like domains.
VEGF-A is important to the growth and maintenance of
vascular endothelial cells and to the development of new
blood- and lymphatic-vessels in physiological and
pathological states. VEGFR-2 is a major mediator of the
mitogenic, angiogenic and microvascular
permeability-enhancing effects of VEGF-A. VEGFR-1 may
play an inhibitory part in these processes by binding
VEGF and interfering with its interaction with VEGFR-2.
VEGFR-1 has a signaling role in mediating monocyte
chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and
a survival signal in hematopoietic stem cells or
leukemia cells. VEGFR-3 has been shown to be involved in
tumor angiogenesis and growth. This group also contains
alpha-type platelet-derived growth factor receptor
precursor (PDGFR)-alpha (CD140a), and PDGFR-beta
(CD140b). PDGFRs alpha and beta have an extracellular
component with five Ig-like domains, a transmembrane
segment, and a cytoplasmic portion that has protein
tyrosine kinase activity.
Length = 84
Score = 28.1 bits (63), Expect = 4.4
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Query: 320 NSVEDLQWS-PGEKRVLASCSVDLSIRIWDTRV--INTKSCMLTLPNAHTSD 368
N D QW+ PG+KR + + S LT+PNA D
Sbjct: 15 NEGVDFQWTYPGKKRGRGK------SMVTRQSLSEATELSSTLTIPNATLKD 60
>gnl|CDD|220693 pfam10325, 7TM_GPCR_Srz, Serpentine type 7TM GPCR chemoreceptor
Srz. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srz is a solo families
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'. The genes encoding Srz appear to be under
strong adaptive evolutionary pressure.
Length = 266
Score = 29.9 bits (68), Expect = 4.5
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 769 LYCFFVS--LVHCIFVWLKYQLFVDVYYWAFVDLVYYIFPDL 808
LY FV ++ + L + + L+ +IF ++
Sbjct: 133 LYLVFVLKDIILFLLYVLSFSKDLSTEILELFYLITFIFLNI 174
>gnl|CDD|239306 cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like family,
Rod-derived cone viability factor (RdCVF) subfamily;
RdCVF is a thioredoxin (TRX)-like protein specifically
expressed in photoreceptors. RdCVF was isolated and
identified as a factor that supports cone survival in
retinal cultures. Cone photoreceptor loss is responsible
for the visual handicap resulting from the inherited
disease, retinitis pigmentosa. RdCVF shows 33%
similarity to TRX but does not exhibit any detectable
thiol oxidoreductase activity.
Length = 146
Score = 28.6 bits (64), Expect = 6.5
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 435 QIALWDLAVERDSEIEQREAELKDLPSQLLFI 466
Q+AL + V D +Q+E+ LKD+P + LF+
Sbjct: 65 QLAL--VYVSMDQSEQQQESFLKDMPKKWLFL 94
>gnl|CDD|221711 pfam12686, DUF3800, Protein of unknown function (DUF3800). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria, archaea,
eukaryotes and viruses. Proteins in this family are
typically between 215 and 302 amino acids in length.
There is a DE motif at the N-terminus and a QXXD motif
at the C-terminus that may be functionally important.
Length = 223
Score = 29.0 bits (65), Expect = 7.3
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 445 RDSEIEQREAELKDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTANSGFNIFRTISDLP 504
+ E + + ELK L H G ++KELH G + + +S+L
Sbjct: 29 PEEEAIEFKNELKAL----KRKHFGLDDVKELHASEIRKGRGAFSIEFRKELLDLLSELD 84
Query: 505 SQLLFIHLGQKEIKELH 521
+ + +K++ + +
Sbjct: 85 FLIFRAVVVKKKLVDRY 101
>gnl|CDD|239616 cd03545, Rieske_RO_Alpha_OHBDO_like, Rieske non-heme iron oxygenase
(RO) family, Ortho-halobenzoate-1,2-dioxygenase
(OHBDO)-like subfamily, N-terminal Rieske domain of the
oxygenase alpha subunit; composed of the oxygenase alpha
subunits of OHBDO, salicylate 5-hydroxylase (S5H),
terephthalate 1,2-dioxygenase system (TERDOS) and
similar proteins. ROs comprise a large class of aromatic
ring-hydroxylating dioxygenases that enable
microorganisms to tolerate and utilize aromatic
compounds for growth. The oxygenase alpha subunit
contains an N-terminal Rieske domain with an [2Fe-2S]
cluster and a C-terminal catalytic domain with a
mononuclear Fe(II) binding site. The Rieske [2Fe-2S]
cluster accepts electrons from a reductase or ferredoxin
component and transfers them to the mononuclear iron for
catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to
catechol as well as 2,4-dCBA and 2,5-dCBA to
4-chlorocatechol, as part of the chlorobenzoate
degradation pathway. Although ortho-substituted
chlorobenzoates appear to be particularly recalcitrant
to biodegradation, several strains utilize 2-CBA and the
dCBA derivatives as a sole carbon and energy source. S5H
converts salicylate (2-hydroxybenzoate), a metabolic
intermediate of phenanthrene, to gentisate
(2,5-dihydroxybenzoate) as part of an alternate pathway
for naphthalene catabolism. S5H is a multicomponent
enzyme made up of NagGH (the oxygenase components),
NagAa (the ferredoxin reductase component), and NagAb
(the ferredoxin component). The oxygenase component is
made up of alpha (NagG) and beta (NagH) subunits. TERDOS
is present in gram-positive bacteria and proteobacteria
where it converts terephthalate (1,4-dicarboxybenzene)
to protocatechuate as part of the terephthalate
degradation pathway. The oxygenase component of TERDOS,
called TerZ, is a hetero-hexamer with 3 alpha
(TerZalpha) and 3 beta (TerZbeta) subunits.
Length = 150
Score = 28.6 bits (64), Expect = 7.5
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 379 PLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWH 420
P++V+ +DG +H W R +G+ V + T +H
Sbjct: 50 PVVVTRAEDGSLHAWVNRCAHRGALVCRERRGNDGSLTCVYH 91
>gnl|CDD|226036 COG3505, VirD4, Type IV secretory pathway, VirD4 components
[Intracellular trafficking and secretion].
Length = 596
Score = 29.7 bits (67), Expect = 8.1
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 530 IISTANSGFNIFRTISMSNLTSTEEDNERELEDDESE---GSGDEDR-RKDPVMNSYFI 584
++STA+S + ++ TS + + R+L ++ G + R P++
Sbjct: 330 VLSTASSALTLLMNPLVAAATSGSDFDIRDLRKKKTTVYFGLDPDRISRVKPLLRLILQ 388
>gnl|CDD|216705 pfam01794, Ferric_reduct, Ferric reductase like transmembrane
component. This family includes a common region in the
transmembrane proteins mammalian cytochrome B-245 heavy
chain (gp91-phox), ferric reductase transmembrane
component in yeast and respiratory burst oxidase from
mouse-ear cress. This may be a family of
flavocytochromes capable of moving electrons across the
plasma membrane. The Frp1 protein from S. pombe is a
ferric reductase component and is required for cell
surface ferric reductase activity, mutants in frp1 are
deficient in ferric iron uptake. Cytochrome B-245 heavy
chain is a FAD-dependent dehydrogenase it is also has
electron transferase activity which reduces molecular
oxygen to superoxide anion, a precursor in the
production of microbicidal oxidants. Mutations in the
sequence of cytochrome B-245 heavy chain (gp91-phox)
lead to the X-linked chronic granulomatous disease. The
bacteriocidal ability of phagocytic cells is reduced and
is characterized by the absence of a functional plasma
membrane associated NADPH oxidase. The chronic
granulomatous disease gene codes for the beta chain of
cytochrome B-245 and cytochrome B-245 is missing from
patients with the disease.
Length = 122
Score = 28.0 bits (63), Expect = 8.3
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 751 LASCSVDRSNRIGARRDM-LYCFFVSLVHCIFVWLKYQLFVDVYYWAFVDLVYYIF 805
L S+DR R + F ++L+H I + + + YI
Sbjct: 25 LTGLSLDRLLLF--HRWLGRLAFLLALLHVILYLVLWLRLGGILLLLEKLKRPYIL 78
>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General
function prediction only].
Length = 339
Score = 29.5 bits (67), Expect = 8.4
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 287 VLATGDCKRNIHIWTPREAGAWQVDQKPLV-GH 318
V A G C ++H+ G W V + PL+ GH
Sbjct: 35 VEACGVCHTDLHVAK----GDWPVPKLPLIPGH 63
Score = 29.5 bits (67), Expect = 8.4
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 703 VLATGDCKRNIHIWTPREAGAWQVDQKPLV-GH 734
V A G C ++H+ G W V + PL+ GH
Sbjct: 35 VEACGVCHTDLHVAK----GDWPVPKLPLIPGH 63
>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of
pre-ribosomes [Translation, ribosomal structure and
biogenesis / Intracellular trafficking and secretion].
Length = 657
Score = 29.2 bits (65), Expect = 9.4
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 10 PALEASNDIVDNDSDEDME-QGEESKDKTKPDESKEEK 46
+ S ++ DSD E Q + K P+ +++
Sbjct: 95 LSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQ 132
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.424
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 41,753,317
Number of extensions: 4056684
Number of successful extensions: 3930
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3833
Number of HSP's successfully gapped: 67
Length of query: 812
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 707
Effective length of database: 6,280,432
Effective search space: 4440265424
Effective search space used: 4440265424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.0 bits)